Number_of_reads_in_clusters	103873					
Number_of_clusters	13675					
Number_of_superclusters	13597					
Number_of_singlets	156927					
Number_of_analyzed_reads	260800					
						
Cluster	Supercluster	Size	Size_adjusted	Automatic_annotation	TAREAN_annotation	Final_annotation
1	5	2530	2530	All	Other	All
2	4	2241	2241	All	Other	All
3	3	1272	1272	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
4	1	1208	1208	All/organelle/plastid	Putative satellites (low confidence)	All/organelle/plastid
5	1	1109	1109	All/organelle/plastid	Putative satellites (low confidence)	All/organelle/plastid
6	12	905	905	All	Other	All
7	1	853	853	All/organelle/plastid	Other	All/organelle/plastid
8	1	850	850	All/organelle/plastid	Other	All/organelle/plastid
9	1	841	841	All/organelle/plastid	Other	All/organelle/plastid
10	2	784	784	All/repeat/rDNA/45S_rDNA	Putative satellites (low confidence)	All/repeat/rDNA/45S_rDNA
11	4	767	767	All	Other	All
12	1	752	752	All/organelle/plastid	Other	All/organelle/plastid
13	1	726	726	All/organelle/plastid	Other	All/organelle/plastid
14	1	702	702	All/organelle/plastid	Other	All/organelle/plastid
15	3	696	696	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
16	8	685	685	All/organelle/plastid	Other	All/organelle/plastid
17	3	649	649	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
18	16	635	635	All/repeat/satellite	Putative satellites (high confidence)	All/repeat/satellite
19	2	628	628	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
20	1	619	619	All/organelle/plastid	Other	All/organelle/plastid
21	14	610	610	All	Other	All
22	17	605	605	All	Other	All
23	18	601	601	All	Other	All
24	2	596	596	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
25	10	577	577	All	Other	All
26	19	570	570	All	Other	All
27	20	554	554	All	Other	All
28	3	553	553	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
29	1	548	548	All/organelle/plastid	Other	All/organelle/plastid
30	9	546	546	All	Other	All
31	2	543	543	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
32	1	542	542	All/organelle/plastid	Other	All/organelle/plastid
33	1	540	540	All/organelle/plastid	Other	All/organelle/plastid
34	7	540	540	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
35	1	533	533	All/organelle/plastid	Other	All/organelle/plastid
36	1	518	518	All/organelle/plastid	Other	All/organelle/plastid
37	22	518	518	All	Other	All
38	2	510	510	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
39	21	500	500	All	Other	All
40	1	486	486	All/organelle/plastid	Other	All/organelle/plastid
41	7	485	485	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
42	23	480	480	All	Other	All
43	2	470	470	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
44	1	465	465	All/organelle/plastid	Other	All/organelle/plastid
45	1	454	454	All/organelle/plastid	Other	All/organelle/plastid
46	7	453	453	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
47	13	451	451	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
48	3	450	450	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
49	24	449	449	All	Other	All
50	7	449	449	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
51	1	439	439	All/organelle/plastid	Other	All/organelle/plastid
52	6	432	432	All/organelle/plastid	Other	All/organelle/plastid
53	1	431	431	All/organelle/plastid	Other	All/organelle/plastid
54	9	431	431	All	Other	All
55	25	429	429	All	Other	All
56	1	428	428	All/organelle/plastid	Other	All/organelle/plastid
57	1	418	418	All/organelle/plastid	Other	All/organelle/plastid
58	1	413	413	All/organelle/plastid	Other	All/organelle/plastid
59	26	409	409	All	Other	All
60	27	400	400	All/organelle/plastid	Other	All/organelle/plastid
61	28	397	397	All	Other	All
62	1	397	397	All/organelle/plastid	Other	All/organelle/plastid
63	29	390	390	All/organelle/plastid	Other	All/organelle/plastid
64	6	387	387	All/organelle/plastid	Other	All/organelle/plastid
65	11	382	382	All/organelle/plastid	Other	All/organelle/plastid
66	30	381	381	All	Other	All
67	32	361	361	All/repeat/satellite	Putative satellites (low confidence)	All/repeat/satellite
68	2	357	357	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
69	2	354	354	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
70	15	352	352	All/repeat/mobile_element/Class_I/LTR	Other	All/repeat/mobile_element/Class_I/LTR
71	33	342	342	All/organelle/plastid	Other	All/organelle/plastid
72	35	329	329	All	Other	All
73	8	328	328	All/organelle/plastid	Other	All/organelle/plastid
74	1	328	328	All/organelle/plastid	Other	All/organelle/plastid
75	36	327	327	All	Other	All
76	37	326	326	All	Other	All
77	38	323	323	All	Other	All
78	1	321	321	All/organelle/plastid	Other	All/organelle/plastid
79	6	320	320	All/organelle/plastid	Other	All/organelle/plastid
80	6	319	319	All/organelle/plastid	Other	All/organelle/plastid
81	1	318	318	All/organelle/plastid	Other	All/organelle/plastid
82	39	317	317	All	Other	All
83	6	315	315	All/organelle/plastid	Other	All/organelle/plastid
84	40	315	315	All/organelle/plastid	Other	All/organelle/plastid
85	1	313	313	All/organelle/plastid	Other	All/organelle/plastid
86	15	302	302	All/repeat/mobile_element/Class_I/LTR	Other	All/repeat/mobile_element/Class_I/LTR
87	1	302	302	All/organelle/plastid	Other	All/organelle/plastid
88	41	296	296	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA
89	42	292	292	All	Other	All
90	43	283	283	All	Other	All
91	44	277	277	All/organelle/plastid	Other	All/organelle/plastid
92	45	274	274	All	Other	All
93	46	274	274	All	Other	All
94	11	271	271	All/organelle/plastid	Other	All/organelle/plastid
95	1	268	268	All/organelle/plastid	Other	All/organelle/plastid
96	8	258	258	All/organelle/plastid	Other	All/organelle/plastid
97	6	256	256	All/organelle/plastid	Other	All/organelle/plastid
98	10	252	252	All	Other	All
99	3	250	250	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
100	1	250	250	All/organelle/plastid	Other	All/organelle/plastid
101	47	249	249	All	Other	All
102	1	247	247	All/organelle/plastid	Other	All/organelle/plastid
103	48	247	247	All/organelle/plastid	Other	All/organelle/plastid
104	34	240	240	All	Other	All
105	1	240	240	All/organelle/plastid	Other	All/organelle/plastid
106	50	238	238	All	Other	All
107	11	231	231	All/organelle/plastid	Other	All/organelle/plastid
108	1	225	225	All/organelle/plastid	Other	All/organelle/plastid
109	51	221	221	All	Other	All
110	31	217	217	All	Other	All
111	52	204	204	All	Other	All
112	53	203	203	All	Other	All
113	54	201	201	All	Other	All
114	6	198	198	All/organelle/plastid	Other	All/organelle/plastid
115	55	194	194	All	Other	All
116	7	194	194	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
117	56	189	189	All	Other	All
118	57	188	188	All	Other	All
119	58	187	187	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
120	59	185	185	All	Other	All
121	13	184	184	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
122	60	179	179	All	Other	All
123	61	173	173	All	Other	All
124	1	171	171	All/organelle/plastid	Other	All/organelle/plastid
125	1	170	170	All/organelle/plastid	Other	All/organelle/plastid
126	62	167	167	All/organelle/plastid	Other	All/organelle/plastid
127	31	161	161	All	Other	All
128	6	160	160	All/organelle/plastid	Other	All/organelle/plastid
129	63	153	153	All	Other	All
130	64	153	153	All/repeat/rDNA/5S_rDNA	rDNA	All/repeat/rDNA/5S_rDNA
131	65	152	152	All	Other	All
132	66	143	143	All	Other	All
133	10	143	143	All	Other	All
134	67	139	139	All	Other	All
135	68	139	139	All	Other	All
136	69	139	139	All	Other	All
137	70	138	138	All/organelle/plastid	Other	All/organelle/plastid
138	71	137	137	All	Other	All
139	72	137	137	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
140	6	134	134	All/organelle/plastid	Other	All/organelle/plastid
141	73	132	132	All	Other	All
142	74	132	132	All	Other	All
143	49	128	128	All	Other	All
144	75	127	127	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
145	76	123	123	All/organelle/plastid	Other	All/organelle/plastid
146	77	120	120	All	Other	All
147	78	115	115	All	Other	All
148	79	113	113	All	Other	All
149	49	111	111	All	Other	All
150	80	111	111	All	Other	All
151	81	109	109	All	Other	All
152	82	103	103	All	Other	All
153	34	100	100	All	Other	All
154	83	99	99	All	Other	All
155	7	99	99	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
156	84	96	96	All	Other	All
157	13	95	95	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
158	85	91	91	All/repeat/mobile_element/Class_I/LTR/Ty1_copia	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia
159	86	90	90	All/organelle/plastid	Other	All/organelle/plastid
160	87	89	89	All	Other	All
161	88	89	89	All	Other	All
162	89	85	85	All	Other	All
163	2	84	84	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
164	90	84	84	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
165	91	83	83	All	Other	All
166	92	82	82	All	Other	All
167	93	81	81	All	Other	All
168	94	81	81	All	Other	All
169	95	80	80	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
170	96	80	80	All	Other	All
171	97	78	78	All	Other	All
172	98	78	78	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
173	99	76	76	All	Other	All
174	100	75	75	All	Other	All
175	101	73	73	All	Other	All
176	102	70	70	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
177	103	70	70	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
178	14	70	70	All	Other	All
179	104	69	69	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand
180	105	69	69	All	Other	All
181	106	68	68	All	Other	All
182	107	63	63	All	Other	All
183	108	62	62	All	Other	All
184	109	62	62	All	Other	All
185	110	62	62	All/organelle/plastid	Other	All/organelle/plastid
186	111	62	62	All	Other	All
187	112	61	61	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
188	113	61	61	All	Other	All
189	114	60	60	All	Other	All
190	115	59	59	All	Other	All
191	116	57	57	All	Other	All
192	117	57	57	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
193	118	56	56	All	Other	All
194	119	56	56	All	Other	All
195	120	56	56	All	Other	All
196	121	55	55	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand
197	122	54	54	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand
198	123	51	51	All	Other	All
199	124	51	51	All	Other	All
200	125	49	49	All	Other	All
201	11	49	49	All/organelle/plastid	Other	All/organelle/plastid
202	126	47	47	All	Other	All
203	127	47	47	All	Other	All
204	128	47	47	All	Other	All
205	129	47	47	All	Other	All
206	130	46	46	All	Other	All
207	131	46	46	All	Other	All
208	132	46	46	All	Other	All
209	133	45	45	All	Other	All
210	134	45	45	All	Other	All
211	135	45	45	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
212	136	45	45	All	Other	All
213	137	45	45	All	Other	All
214	138	45	45	All	Other	All
215	139	44	44	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
216	140	44	44	All	Other	All
217	141	44	44	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
218	142	44	44	All	Other	All
219	143	43	43	All	Other	All
220	21	43	43	All	Other	All
221	144	43	43	All	Other	All
222	145	42	42	All	Other	All
223	146	42	42	All	Other	All
224	147	41	41	All	Other	All
225	148	41	41	All	Other	All
226	149	41	41	All	Other	All
227	150	41	41	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
228	151	40	40	All	Other	All
229	152	40	40	All	Other	All
230	153	40	40	All	Other	All
231	154	39	39	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
232	155	39	39	All	Other	All
233	156	38	38	All	Other	All
234	157	37	37	All/organelle/plastid	Other	All/organelle/plastid
235	158	37	37	All	Other	All
236	159	37	37	All	Other	All
237	160	36	36	All	Other	All
238	161	35	35	All	Other	All
239	162	35	35	All	Other	All
240	163	35	35	All	Other	All
241	1	35	35	All/organelle/plastid	Other	All/organelle/plastid
242	164	35	35	All	Other	All
243	165	33	33	All	Other	All
244	166	33	33	All	Other	All
245	167	33	33	All	Other	All
246	168	33	33	All	Other	All
247	169	33	33	All	Other	All
248	170	32	32	All	Other	All
249	171	32	32	All	Other	All
250	172	31	31	All	Other	All
251	173	31	31	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
252	174	31	31	All	Other	All
253	175	31	31	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand
254	176	31	31	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
255	177	31	31	All	Other	All
256	178	31	31	All	Other	All
257	179	29	29	All	Other	All
258	180	29	29	All	Other	All
259	181	28	28	All	Other	All
260	182	28	28	All	Other	All
261	183	28	28	All	Other	All
262	184	28	28	All	Other	All
263	185	27	27	All	Other	All
264	186	27	27	All	Other	All
265	187	27	27	All	Other	All
266	188	27	27	All	Other	All
267	189	27	27	All	Other	All
268	190	27	27	All	Other	All
269	191	27	27	All	Other	All
270	192	26	26	All	Other	All
271	193	26	26	All	Other	All
272	194	26	26	All	Other	All
273	195	26	26	All	Other	All
274	196	26	26	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
275	197	26	26	All	Other	All
276	198	26	26	All	Other	All
