Number_of_reads_in_clusters	100251					
Number_of_clusters	13823					
Number_of_superclusters	13765					
Number_of_singlets	160549					
Number_of_analyzed_reads	260800					
						
Cluster	Supercluster	Size	Size_adjusted	Automatic_annotation	TAREAN_annotation	Final_annotation
1	4	2556	2556	All	Other	All
2	5	2195	2195	All	Other	All
3	1	963	963	All/organelle/plastid	Putative satellites (low confidence)	All/organelle/plastid
4	3	871	871	All/repeat/rDNA/45S_rDNA	Putative satellites (low confidence)	All/repeat/rDNA/45S_rDNA
5	11	832	832	All	Other	All
6	1	816	816	All/organelle/plastid	Other	All/organelle/plastid
7	2	806	806	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
8	9	782	782	All	Putative satellites (low confidence)	All
9	1	772	772	All/organelle/plastid	Other	All/organelle/plastid
10	2	757	757	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
11	2	724	724	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
12	2	714	714	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
13	7	660	660	All	Other	All
14	10	632	632	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
15	1	621	621	All/organelle/plastid	Other	All/organelle/plastid
16	1	620	620	All/organelle/plastid	Other	All/organelle/plastid
17	16	608	608	All	Other	All
18	17	590	590	All	Other	All
19	3	585	585	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
20	18	583	583	All	Other	All
21	1	573	573	All/organelle/plastid	Other	All/organelle/plastid
22	19	550	550	All	Other	All
23	15	549	549	All	Other	All
24	1	536	536	All/organelle/plastid	Other	All/organelle/plastid
25	1	517	517	All/organelle/plastid	Other	All/organelle/plastid
26	1	515	515	All/organelle/plastid	Other	All/organelle/plastid
27	20	513	513	All/repeat/satellite	Putative satellites (high confidence)	All/repeat/satellite
28	7	511	511	All	Other	All
29	7	510	510	All	Other	All
30	6	499	499	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
31	21	498	498	All	Other	All
32	3	487	487	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
33	8	480	480	All	Other	All
34	2	478	478	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
35	6	471	471	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
36	1	469	469	All/organelle/plastid	Other	All/organelle/plastid
37	3	469	469	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
38	1	468	468	All/organelle/plastid	Other	All/organelle/plastid
39	1	461	461	All/organelle/plastid	Other	All/organelle/plastid
40	3	447	447	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
41	12	444	444	All	Other	All
42	22	443	443	All	Other	All
43	23	430	430	All	Other	All
44	13	422	422	All/organelle/plastid	Other	All/organelle/plastid
45	25	419	419	All	Other	All
46	6	414	414	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
47	26	413	413	All	Other	All
48	27	406	406	All	Other	All
49	29	402	402	All	Other	All
50	30	395	395	All	Other	All
51	31	395	395	All	Other	All
52	8	391	391	All	Other	All
53	32	390	390	All/organelle/plastid	Other	All/organelle/plastid
54	2	387	387	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
55	10	382	382	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
56	6	381	381	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
57	1	381	381	All/organelle/plastid	Other	All/organelle/plastid
58	33	374	374	All	Other	All
59	3	372	372	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
60	3	367	367	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
61	2	363	363	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
62	34	361	361	All/repeat/satellite	Putative satellites (low confidence)	All/repeat/satellite
63	36	348	348	All/organelle/plastid	Other	All/organelle/plastid
64	1	343	343	All/organelle/plastid	Other	All/organelle/plastid
65	24	342	342	All	Other	All
66	37	338	338	All	Other	All
67	9	338	338	All	Other	All
68	38	335	335	All	Putative satellites (low confidence)	All
69	14	334	334	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
70	14	329	329	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
71	6	324	324	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
72	3	323	323	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
73	39	310	310	All/organelle/plastid	Other	All/organelle/plastid
74	40	309	309	All/organelle/plastid	Other	All/organelle/plastid
75	41	306	306	All	Other	All
76	8	290	290	All	Other	All
77	42	287	287	All/organelle/plastid	Other	All/organelle/plastid
78	43	287	287	All	Other	All
79	44	286	286	All	Other	All
80	45	285	285	All	Other	All
81	46	285	285	All/organelle/plastid	Other	All/organelle/plastid
82	13	283	283	All/organelle/plastid	Other	All/organelle/plastid
83	47	282	282	All	Other	All
84	1	277	277	All/organelle/plastid	Other	All/organelle/plastid
85	49	270	270	All/organelle/plastid	Other	All/organelle/plastid
86	50	266	266	All/organelle/plastid	Other	All/organelle/plastid
87	52	256	256	All/organelle/plastid	Other	All/organelle/plastid
88	53	255	255	All	Other	All
89	54	252	252	All	Other	All
90	28	247	247	All	Other	All
91	1	246	246	All/organelle/plastid	Other	All/organelle/plastid
92	55	242	242	All/organelle/plastid	Other	All/organelle/plastid
93	56	240	240	All/organelle/plastid	Other	All/organelle/plastid
94	57	240	240	All	Other	All
95	58	239	239	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand
96	59	235	235	All/organelle/plastid	Other	All/organelle/plastid
97	60	229	229	All	Other	All
98	61	228	228	All	Other	All
99	62	224	224	All	Other	All
100	35	219	219	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA
101	1	211	211	All/organelle/plastid	Other	All/organelle/plastid
102	48	210	210	All	Other	All
103	63	207	207	All/organelle/plastid	Other	All/organelle/plastid
104	64	205	205	All	Other	All
105	65	204	204	All/organelle/plastid	Other	All/organelle/plastid
106	1	199	199	All/organelle/plastid	Other	All/organelle/plastid
107	66	196	196	All	Other	All
108	67	195	195	All	Other	All
109	68	193	193	All	Other	All
110	1	189	189	All/organelle/plastid	Other	All/organelle/plastid
111	69	188	188	All/organelle/plastid	Other	All/organelle/plastid
112	70	185	185	All/organelle/plastid	Other	All/organelle/plastid
113	71	184	184	All	Other	All
114	12	182	182	All	Other	All
115	72	180	180	All	Other	All
116	1	176	176	All/organelle/plastid	Other	All/organelle/plastid
117	73	175	175	All/organelle/plastid	Other	All/organelle/plastid
118	74	174	174	All/organelle/plastid	Other	All/organelle/plastid
119	75	171	171	All/organelle/plastid	Other	All/organelle/plastid
120	76	171	171	All	Other	All
121	77	168	168	All	Other	All
122	78	166	166	All	Other	All
123	79	163	163	All/organelle/plastid	Other	All/organelle/plastid
124	80	160	160	All/organelle/plastid	Other	All/organelle/plastid
125	3	157	157	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
126	7	156	156	All	Other	All
127	28	155	155	All	Other	All
128	81	152	152	All	Other	All
129	82	150	150	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
130	1	148	148	All/organelle/plastid	Other	All/organelle/plastid
131	83	145	145	All	Other	All
132	84	143	143	All/organelle/plastid	Other	All/organelle/plastid
133	51	142	142	All	Other	All
134	1	140	140	All/organelle/plastid	Other	All/organelle/plastid
135	85	139	139	All/organelle/plastid	Other	All/organelle/plastid
136	86	137	137	All/organelle/plastid	Other	All/organelle/plastid
137	12	137	137	All	Other	All
138	87	136	136	All	Other	All
139	88	136	136	All	Other	All
140	89	136	136	All	Other	All
141	90	134	134	All	Other	All
142	35	133	133	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA
143	91	132	132	All/organelle/plastid	Other	All/organelle/plastid
144	92	129	129	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
145	93	127	127	All	Other	All
146	94	126	126	All	Other	All
147	95	125	125	All/organelle/plastid	Other	All/organelle/plastid
148	96	125	125	All/organelle/plastid	Other	All/organelle/plastid
149	51	123	123	All	Other	All
150	97	123	123	All/organelle/plastid	Other	All/organelle/plastid
151	98	114	114	All	Other	All
152	99	114	114	All	Other	All
153	100	107	107	All	Other	All
154	101	106	106	All/repeat/rDNA/5S_rDNA	rDNA	All/repeat/rDNA/5S_rDNA
155	102	105	105	All	Other	All
156	103	98	98	All	Other	All
157	104	96	96	All	Other	All
158	105	94	94	All	Other	All
159	106	93	93	All	Other	All
160	107	93	93	All	Other	All
161	108	93	93	All	Other	All
162	109	91	91	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
163	110	89	89	All	Other	All
164	111	88	88	All	Other	All
165	3	87	87	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
166	112	87	87	All	Other	All
167	113	87	87	All	Other	All
168	114	86	86	All	Other	All
169	115	85	85	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
170	116	83	83	All	Other	All
171	117	78	78	All	Other	All
172	118	77	77	All/organelle/plastid	Other	All/organelle/plastid
173	24	77	77	All	Other	All
174	119	76	76	All	Other	All
175	120	75	75	All	Other	All
176	121	75	75	All	Other	All
177	122	74	74	All	Other	All
178	123	74	74	All/organelle/plastid	Other	All/organelle/plastid
179	124	74	74	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
180	125	72	72	All	Other	All
181	48	68	68	All	Other	All
182	126	68	68	All	Other	All
183	127	65	65	All	Other	All
184	128	64	64	All	Other	All
185	129	63	63	All	Other	All
186	130	63	63	All	Other	All
187	131	63	63	All/organelle/plastid	Other	All/organelle/plastid
188	132	63	63	All	Other	All
189	133	62	62	All	Other	All
190	134	62	62	All	Other	All
191	1	61	61	All/organelle/plastid	Other	All/organelle/plastid
192	135	61	61	All	Other	All
193	136	61	61	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
194	137	60	60	All	Other	All
195	138	59	59	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
196	15	59	59	All	Other	All
197	139	58	58	All	Other	All
198	140	58	58	All	Other	All
199	141	58	58	All	Other	All
200	142	58	58	All	Other	All
201	143	57	57	All	Other	All
202	144	56	56	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
203	145	56	56	All	Other	All
204	146	54	54	All	Other	All
205	147	54	54	All	Other	All
206	148	54	54	All	Other	All
207	149	53	53	All	Other	All
208	150	51	51	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
209	151	51	51	All	Other	All
210	152	51	51	All	Other	All
211	153	51	51	All	Other	All
212	154	49	49	All	Other	All
213	155	49	49	All	Other	All
214	156	48	48	All	Other	All
215	157	47	47	All	Other	All
216	158	47	47	All	Other	All
217	159	47	47	All	Other	All
218	160	45	45	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
219	161	44	44	All	Other	All
220	162	42	42	All	Other	All
221	163	42	42	All	Other	All
222	164	42	42	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
223	165	41	41	All	Other	All
224	166	41	41	All	Other	All
225	167	41	41	All	Other	All
226	168	41	41	All	Other	All
227	169	40	40	All	Other	All
228	170	40	40	All	Other	All
229	171	39	39	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
230	172	39	39	All	Other	All
231	173	38	38	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
232	174	38	38	All	Other	All
233	175	38	38	All	Other	All
234	176	38	38	All	Other	All
235	177	38	38	All	Other	All
236	178	38	38	All	Other	All
237	179	38	38	All	Other	All
238	180	37	37	All	Other	All
239	181	37	37	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
240	182	37	37	All	Other	All
241	183	36	36	All	Other	All
242	184	36	36	All	Other	All
243	185	36	36	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
244	186	36	36	All	Other	All
245	187	36	36	All	Other	All
246	188	35	35	All	Other	All
247	189	35	35	All	Other	All
248	190	34	34	All	Other	All
249	191	34	34	All/organelle/plastid	Other	All/organelle/plastid
250	192	34	34	All	Other	All
251	193	34	34	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
252	194	33	33	All	Other	All
253	195	33	33	All	Other	All
254	196	33	33	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
255	197	33	33	All	Other	All
256	198	33	33	All	Other	All
257	199	33	33	All	Other	All
258	200	33	33	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
259	201	33	33	All	Other	All
260	202	32	32	All	Other	All
261	203	32	32	All	Other	All
262	204	32	32	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
263	205	32	32	All	Other	All
264	206	32	32	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
265	207	32	32	All	Other	All
266	208	31	31	All	Other	All
267	209	31	31	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
268	210	31	31	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
269	211	31	31	All	Other	All
270	212	30	30	All	Other	All
271	213	30	30	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
272	214	30	30	All	Other	All
273	215	30	30	All	Other	All
274	216	30	30	All	Other	All
275	217	30	30	All	Other	All
276	218	30	30	All	Other	All
277	219	30	30	All	Other	All
278	220	29	29	All	Other	All
279	221	29	29	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
280	222	29	29	All	Other	All
281	223	29	29	All	Other	All
282	224	28	28	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
283	225	28	28	All	Other	All
284	226	28	28	All	Other	All
285	227	28	28	All	Other	All
286	228	28	28	All	Other	All
287	229	27	27	All	Other	All
288	230	27	27	All	Other	All
289	231	27	27	All	Other	All
290	232	27	27	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca
291	233	27	27	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
292	234	27	27	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca
293	235	27	27	All	Other	All
294	236	27	27	All	Other	All
295	237	26	26	All	Other	All
296	238	26	26	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Tat/Retand
297	239	26	26	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
298	240	26	26	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
299	241	26	26	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
300	242	26	26	All	Other	All
301	243	26	26	All	Other	All
302	244	26	26	All	Other	All
303	245	26	26	All	Other	All
304	246	26	26	All	Other	All
