Number_of_reads_in_clusters	97002					
Number_of_clusters	13128					
Number_of_superclusters	13085					
Number_of_singlets	144238					
Number_of_analyzed_reads	241240					
						
Cluster	Supercluster	Size	Size_adjusted	Automatic_annotation	TAREAN_annotation	Final_annotation
1	5	2544	2544	All	Other	All
2	3	1556	1556	All/organelle/plastid	Other	All/organelle/plastid
3	7	1405	1405	All	Other	All
4	1	1328	1328	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
5	1	1284	1284	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Putative satellites (low confidence)	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
6	4	1241	1241	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
7	1	1211	1211	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
8	2	1210	1210	All/repeat/rDNA/45S_rDNA	Putative satellites (low confidence)	All/repeat/rDNA/45S_rDNA
9	1	1069	1069	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
10	4	1061	1061	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
11	9	1017	1017	All/repeat	Putative satellites (low confidence)	All/repeat
12	1	1010	1010	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
13	3	1004	1004	All/organelle/plastid	Other	All/organelle/plastid
14	3	1002	1002	All/organelle/plastid	Other	All/organelle/plastid
15	1	996	996	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
16	2	996	996	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
17	1	960	960	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
18	2	933	933	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
19	6	920	920	All/repeat/mobile_element	Other	All/repeat/mobile_element
20	12	878	878	All	Other	All
21	11	869	869	All	Other	All
22	1	850	850	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
23	1	846	846	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
24	6	818	818	All/repeat/mobile_element	Other	All/repeat/mobile_element
25	2	816	816	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
26	1	800	800	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
27	1	729	729	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
28	8	687	687	All	Other	All
29	3	640	640	All/organelle/plastid	Other	All/organelle/plastid
30	1	639	639	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
31	2	634	634	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
32	15	630	630	All/repeat/satellite	Putative satellites (low confidence)	All/repeat/satellite
33	13	626	626	All	Other	All
34	2	617	617	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
35	2	582	582	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
36	3	543	543	All/organelle/plastid	Other	All/organelle/plastid
37	4	498	498	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
38	10	490	490	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
39	16	488	488	All	Other	All
40	8	478	478	All	Other	All
41	17	473	473	All/organelle/plastid	Other	All/organelle/plastid
42	18	460	460	All	Other	All
43	10	459	459	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/hAT
44	14	457	457	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
45	4	449	449	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
46	1	424	424	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
47	20	424	424	All	Other	All
48	2	407	407	All/repeat/rDNA/45S_rDNA	Putative LTR elements	All/repeat/rDNA/45S_rDNA
49	3	406	406	All/organelle/plastid	Other	All/organelle/plastid
50	21	405	405	All	Other	All
51	22	405	405	All	Other	All
52	23	402	402	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
53	24	359	359	All	Other	All
54	25	355	355	All/organelle/plastid	Other	All/organelle/plastid
55	14	340	340	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
56	26	334	334	All	Other	All
57	1	332	332	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Angela
58	27	293	293	All	Other	All
59	28	290	290	All/repeat/mobile_element/Class_I/LTR	Other	All/repeat/mobile_element/Class_I/LTR
60	29	283	283	All	Other	All
61	30	282	282	All/repeat/satellite	Putative satellites (low confidence)	All/repeat/satellite
62	31	281	281	All	Other	All
63	32	272	272	All/organelle/plastid	Other	All/organelle/plastid
64	33	272	272	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/MuDR_Mutator
65	34	266	266	All	Other	All
66	35	265	265	All	Other	All
67	36	265	265	All	Other	All
68	6	262	262	All/repeat/mobile_element	Other	All/repeat/mobile_element
69	37	262	262	All	Other	All
70	3	257	257	All/organelle/plastid	Putative satellites (low confidence)	All/organelle/plastid
71	38	254	254	All	Other	All
72	39	249	249	All	Other	All
73	13	243	243	All	Other	All
74	40	237	237	All/organelle/plastid	Other	All/organelle/plastid
75	19	233	233	All	Other	All
76	41	225	225	All	Other	All
77	19	222	222	All	Other	All
78	3	221	221	All/organelle/plastid	Other	All/organelle/plastid
79	42	216	216	All	Other	All
80	4	213	213	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
81	43	209	209	All	Other	All
82	44	207	207	All	Other	All
83	45	204	204	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
84	3	188	188	All/organelle/plastid	Other	All/organelle/plastid
85	9	183	183	All/repeat	Other	All/repeat
86	46	183	183	All	Other	All
87	47	179	179	All	Other	All
88	48	164	164	All/organelle/plastid	Other	All/organelle/plastid
89	49	160	160	All	Other	All
90	50	158	158	All	Other	All
91	2	157	157	All/repeat/rDNA/45S_rDNA	Other	All/repeat/rDNA/45S_rDNA
92	51	154	154	All/organelle/plastid	Other	All/organelle/plastid
93	52	152	152	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca
94	53	148	148	All/organelle/plastid	Other	All/organelle/plastid
95	54	145	145	All	Other	All
96	55	144	144	All/organelle/plastid	Other	All/organelle/plastid
97	56	142	142	All	Other	All
98	57	140	140	All	Other	All
99	58	121	121	All	Other	All
100	59	121	121	All/organelle/plastid	Other	All/organelle/plastid
101	60	120	120	All	Other	All
102	61	118	118	All	Other	All
103	62	118	118	All	Other	All
104	63	106	106	All	Other	All
105	64	105	105	All	Other	All
106	65	105	105	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
107	66	105	105	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca
108	67	104	104	All	Other	All
109	68	101	101	All/organelle/plastid	Other	All/organelle/plastid
110	69	95	95	All/organelle/plastid	Other	All/organelle/plastid
111	70	93	93	All	Other	All
112	71	93	93	All	Other	All
113	72	91	91	All	Other	All
114	73	90	90	All	Other	All
115	74	89	89	All	Other	All
116	75	86	86	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/SIRE
117	76	84	84	All/organelle/plastid	Other	All/organelle/plastid
118	77	84	84	All	Other	All
119	78	84	84	All	Other	All
120	79	83	83	All/organelle/plastid	Other	All/organelle/plastid
121	80	83	83	All	Other	All
122	81	82	82	All/organelle/plastid	Other	All/organelle/plastid
123	82	82	82	All	Other	All
124	83	82	82	All/organelle/plastid	Other	All/organelle/plastid
125	84	81	81	All	Other	All
126	85	81	81	All	Other	All
127	86	80	80	All/repeat/rDNA/5S_rDNA	rDNA	All/repeat/rDNA/5S_rDNA
128	87	80	80	All/organelle/plastid	Other	All/organelle/plastid
129	88	78	78	All	Other	All
130	89	77	77	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA
131	90	74	74	All	Other	All
132	91	74	74	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
133	11	72	72	All	Other	All
134	92	72	72	All/organelle/plastid	Other	All/organelle/plastid
135	93	70	70	All/organelle/plastid	Other	All/organelle/plastid
136	94	66	66	All	Other	All
137	95	66	66	All/organelle/plastid	Other	All/organelle/plastid
138	8	65	65	All	Other	All
139	96	64	64	All/organelle/plastid	Other	All/organelle/plastid
140	97	63	63	All	Other	All
141	98	63	63	All	Other	All
142	99	62	62	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca
143	100	62	62	All	Other	All
144	101	61	61	All	Other	All
145	102	60	60	All/organelle/plastid	Other	All/organelle/plastid
146	103	60	60	All/organelle/plastid	Other	All/organelle/plastid
147	104	59	59	All	Other	All
148	105	59	59	All	Other	All
149	106	59	59	All/organelle/plastid	Other	All/organelle/plastid
150	107	58	58	All	Other	All
151	108	58	58	All	Other	All
152	109	56	56	All/organelle/plastid	Other	All/organelle/plastid
153	110	54	54	All/organelle/plastid	Other	All/organelle/plastid
154	111	54	54	All	Other	All
155	112	54	54	All	Other	All
156	113	53	53	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
157	114	53	53	All	Other	All
158	115	52	52	All	Other	All
159	116	52	52	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
160	117	52	52	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
161	118	52	52	All	Other	All
162	119	52	52	All	Other	All
163	120	51	51	All/organelle/plastid	Other	All/organelle/plastid
164	121	50	50	All	Other	All
165	122	49	49	All/organelle/plastid	Other	All/organelle/plastid
166	123	48	48	All	Other	All
167	124	47	47	All	Other	All
168	125	47	47	All/organelle/plastid	Other	All/organelle/plastid
169	126	46	46	All	Other	All
170	127	45	45	All	Other	All
171	128	45	45	All/organelle/plastid	Other	All/organelle/plastid
172	129	45	45	All	Other	All
173	130	45	45	All	Other	All
174	131	45	45	All/organelle/plastid	Other	All/organelle/plastid
175	132	45	45	All	Other	All
176	133	44	44	All	Other	All
177	134	44	44	All/organelle/plastid	Other	All/organelle/plastid
178	135	44	44	All	Other	All
179	136	43	43	All/organelle/plastid	Other	All/organelle/plastid
180	137	43	43	All	Other	All
181	138	43	43	All/organelle/plastid	Other	All/organelle/plastid
182	139	42	42	All	Other	All
183	140	42	42	All/organelle/plastid	Other	All/organelle/plastid
184	141	42	42	All	Other	All
185	142	42	42	All	Other	All
186	143	42	42	All	Other	All
187	144	41	41	All	Other	All
188	145	41	41	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
189	146	40	40	All	Other	All
190	147	40	40	All/organelle/plastid	Other	All/organelle/plastid
191	148	40	40	All	Other	All
192	149	40	40	All	Other	All
193	150	40	40	All/organelle/plastid	Other	All/organelle/plastid
194	151	40	40	All	Other	All
195	152	40	40	All	Other	All
196	153	39	39	All/organelle/plastid	Other	All/organelle/plastid
197	154	39	39	All/organelle/plastid	Other	All/organelle/plastid
198	155	39	39	All/organelle/plastid	Other	All/organelle/plastid
199	156	39	39	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Bianca
200	157	38	38	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ivana	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ivana
201	158	37	37	All/organelle/plastid	Other	All/organelle/plastid
202	159	37	37	All	Other	All
203	160	36	36	All	Other	All
204	161	36	36	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
205	162	36	36	All	Other	All
206	163	36	36	All/organelle/plastid	Other	All/organelle/plastid
207	164	36	36	All	Other	All
208	165	36	36	All	Other	All
209	166	36	36	All/organelle/plastid	Other	All/organelle/plastid
210	167	35	35	All	Other	All
211	168	35	35	All	Other	All
212	169	35	35	All/organelle/plastid	Other	All/organelle/plastid
213	170	34	34	All/organelle/plastid	Other	All/organelle/plastid
214	171	34	34	All/organelle/plastid	Other	All/organelle/plastid
215	172	34	34	All	Other	All
216	173	34	34	All/organelle/plastid	Other	All/organelle/plastid
217	174	34	34	All	Other	All
218	175	33	33	All	Other	All
219	176	33	33	All/organelle/plastid	Other	All/organelle/plastid
220	177	33	33	All	Other	All
221	178	33	33	All	Other	All
222	179	33	33	All/organelle/plastid	Other	All/organelle/plastid
223	180	32	32	All	Other	All
224	181	32	32	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/chromovirus/Tekay
225	182	32	32	All	Other	All
226	183	32	32	All	Other	All
227	184	32	32	All	Other	All
228	185	32	32	All	Other	All
229	186	32	32	All/organelle/plastid	Other	All/organelle/plastid
230	187	32	32	All	Other	All
231	188	32	32	All	Other	All
232	189	32	32	All	Other	All
233	190	32	32	All/organelle/plastid	Other	All/organelle/plastid
234	191	32	32	All	Other	All
235	192	32	32	All	Other	All
236	193	31	31	All	Other	All
237	194	31	31	All/organelle/plastid	Other	All/organelle/plastid
238	195	30	30	All	Other	All
239	196	30	30	All/organelle/plastid	Other	All/organelle/plastid
240	197	30	30	All	Other	All
241	198	29	29	All	Other	All
242	199	29	29	All	Other	All
243	200	29	29	All	Other	All
244	201	29	29	All	Other	All
245	202	29	29	All/organelle/plastid	Other	All/organelle/plastid
246	203	29	29	All	Other	All
247	204	29	29	All	Other	All
248	205	28	28	All/organelle/plastid	Other	All/organelle/plastid
249	206	28	28	All	Other	All
250	207	28	28	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
251	208	28	28	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
252	209	28	28	All	Other	All
253	210	28	28	All	Other	All
254	211	28	28	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
255	212	27	27	All	Other	All
256	213	27	27	All	Other	All
257	214	27	27	All/organelle/plastid	Other	All/organelle/plastid
258	215	27	27	All	Other	All
259	216	27	27	All	Other	All
260	217	27	27	All	Other	All
261	218	26	26	All	Other	All
262	219	26	26	All/organelle/plastid	Other	All/organelle/plastid
263	220	26	26	All	Other	All
264	221	26	26	All	Other	All
265	222	26	26	All	Other	All
266	223	26	26	All	Other	All
267	224	26	26	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
268	225	26	26	All	Other	All
269	226	26	26	All	Other	All
270	227	26	26	All	Other	All
271	228	25	25	All	Other	All
272	229	25	25	All	Other	All
273	230	25	25	All	Other	All
274	231	25	25	All	Other	All
275	232	25	25	All	Other	All
276	233	25	25	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila	Other	All/repeat/mobile_element/Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila
277	234	25	25	All	Other	All
278	235	25	25	All	Other	All
279	236	24	24	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ikeros
280	237	24	24	All	Other	All
281	238	24	24	All	Other	All
282	239	24	24	All	Other	All
283	240	24	24	All	Other	All
284	241	24	24	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale	Other	All/repeat/mobile_element/Class_I/LTR/Ty1_copia/Ale
285	242	24	24	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA	Other	All/repeat/mobile_element/Class_II/Subclass_1/TIR/EnSpm_CACTA
286	243	24	24	All	Other	All
287	244	24	24	All/organelle	Other	All/organelle
288	245	24	24	All	Other	All
