'''Exporting equations and variables for conductivity'''

renku run papermill notebooks/extra_calculations/Intrinsic_permeability.ipynb notebooks/extra_calculations/Intrinsic_permeability.ran.ipynb -p output_path1 notebooks/extra_calculations/output/Intrinsic_permeability_variables.py -p output_path2 notebooks/extra_calculations/output/Intrinsic_permeability_equations.py

'''Exporting P-sensor calibrations'''

renku run papermill notebooks/calibrations/P_sensor_calibration.ipynb notebooks/calibrations/P_sensor_calibration.ran.ipynb -p output_path1 notebooks/calibrations/output/P_sensor_variables.py

'''Making the graphs'''

renku run papermill notebooks/paper/graphs_for_paper.ipynb notebooks/paper/graphs_for_paper.ran.ipynb -p input_code1 notebooks/extra_calculations/output/Intrinsic_permeability_variables.py -p input_code2 notebooks/extra_calculations/output/Intrinsic_permeability_equations.py -p input_path notebooks/extra_calculations/definitions.py -p input_mem data/my_data/Data_2019-08-27.csv -p input_air1 data/my_data/Data_2019-06-11.csv -p input_air2 data/my_data/Data_2019-06-11_3.csv -p input_air3 data/my_data/Data_2019-06-18_2.csv -p input_sperry data/my_data/Data_2022-04-25.csv -p input_pull data/my_data/Data_2020-07-17.csv -p input_stress 'data/my_data/Data_2022-02-25.csv' -p output_mem notebooks/paper/graphs/mem.png -p output_air notebooks/paper/graphs/air_entry.png -p output_sperry notebooks/paper/graphs/sperry.png -p output_pull notebooks/paper/graphs/pull.png -p output_stress 'notebooks/paper/graphs/stress.png'

'''Making the paper'''

renku -S run bash make_paper.sh paper/Krieger_Schymanski_Method.tex paper/output/Krieger_Schymanski_Method.pdf

'''Making the SI file'''

jupyter nbconvert --to latex --template hidecode.tpl notebooks/paper/SI_1.ipynb
