<h1>Amph_Trem.zip<h1>
<h3>Data of mitochondrial haplotypes of the cytochrome oxidase subunit 1 of the trematode, <i>Coitocaecum parvum</i>,
and those of its amphipod host, <i>Paracalliope fluviatilis</i>, from 7 localities in South Island, New Zealand
from Lagrue et al. (2016 Biol. J. Linn. Soc. 118:344–358).</h3>

<h3>FILES:</h3>
<b>Cparvum.tre -</b> <i>Coitocaecum parvum</i>, consensus tree, Nexus file<br> 
<b>m_Cparvum.tre -</b> <i>Coitocaecum parvum</i>, 1,000 posterior probability trees, Nexus file<br>
<b>Pfluviatilis.tre -</b> <i>Paracalliope fluviatilis</i>, consensus tree, Nexus file <br>
<b>m_Pfluviatilis.tre -</b> <i>Paracalliope fluviatilis</i>, 1,000 posterior probability trees, Nexus file<br>
<b>PfxCp_assoc.txt -</b> Association matrix, ASCII file <br>

<h1>Mam_Fleas.zip<h1>
<h3>Data of 130 species of small mammals and 202 species of flea parasites
from Krasnov et al. (2016 Oikos. 125:29–38).</h3>

<h3>FILES:</h3>
<b>host_tree -</b> Mammals, consensus tree, text file<br> 
<b>Pfluviatilis.tre -</b> Flea parasites, consensus tree, text file <br>
<b>assoc_data.txt -</b> Association matrix, ASCII file <br>

<h1>Nucl_Plast.zip<h1>
<h3>Data of nuclear and organellar DNA data from Pérez-Escobar 2021 et al. (2021 Am. J. Bot. 108:1166–1180)</h3>

<h3>FILES:</h3>
<b>NUCtr.nex -</b> Nuclear consensus tree, Nexus file<br> 
<b>FcC_212gNUC.trees -</b> Nuclear 1,000 probability trees, Nexus file<br>
<b>CPtr.nex -</b> Organellar consensus tree, Nexus file <br>
<b>FcC_121sppCP.trees -</b> Organellar 1,000 posterior probability trees, Nexus file<br>

<h3>SCRIPTS:</h3>
<b>Amphipod_Trematode.R -</b> Script to reproduce the analysis with Rtapas package and the Amph_Trem database<br> 
<b>Mammals_Fleas.R -</b> Script to reproduce the analysis with Rtapas package and the Mam_Fleas database <br>
<b>Nuclear_Organellar.R -</b> Script to reproduce the analysis with Rtapas package and the Nucl_Past database <br>
