locus	locus_symbol	locus_name	allele_symbol	allele_name	allele_phenotype
Solyc01g008710	man4	"mannan endo-1,4-beta-mannosidase"	man4i	man4i	Inactive allele of mannosidase that occurs in some tomato varieties.
Solyc01g009070	gamybl1	gamyb-like 1	gib-1	gib-1	deficient in gibberelin (GA) and their seeds require exogenous GA to germinate
Solyc01g056340	det1	de-etiolated 1	1		"Similar to hp-1; enhances all pigments of green and mature red fruits; in presence of u^+ allele, immature fruit are completely dark green."
Solyc01g056340	det1	de-etiolated 1	dg	dark green	"Immature fruit color normal; darker green color appears as fruit develops, then persists until onset of ripening, high chlorophyll compared to wild type or hp-1."
Solyc01g056340	det1	de-etiolated 1	j	Jones	Similar to hp-2.
Solyc01g079620	y	colorless fruit epidermis	1		Fruit epidermis lacks pigmentation.
Solyc01g091630	CD2	cutin deficient 2	cd2	cutin deficient 2	Extremely low levels (less than 2%) of cutin in the fruit cuticle
Solyc01g100490	chln	chloronerva	1		Upper leaves smaller and chlorotic interveinally; strong graft response.
Solyc01g100490	chln	chloronerva	chln-1	chloronerva	"This mutant is an auxotroph for nicotianmine, a key polyamine in iron uptake responses"
Solyc01g104340	Gr	green ripe	1		"Resembles gf, except that center of fruit turns red."
Solyc02g021650	ddb1	UV damaged DNA binding protein 1	1		"Chlorophyll, carotenoids, ascorbic acid content of fruit intensified."
Solyc02g021650	ddb1	UV damaged DNA binding protein 1	hp-1	high-pigment 1	Increased plastid size and number; dark green leaves and deep red fruits.
Solyc02g021650	ddb1	UV damaged DNA binding protein 1	w	WB3	"Similar to hp-1, but more extreme phenotype."
Solyc02g077390	s	compound inflorescence	1		Very compound inflorescences.
Solyc02g077390	s	compound inflorescence	mih	malschor isura heirloom	compound inflorescence
Solyc02g077390	s	compound inflorescence	mult	multiflora LA0560	compound inflorescence
Solyc02g077390	s	compound inflorescence	rh	reisentraube heirloom	compound inflorescence
Solyc02g077390	s	compound inflorescence	rqm	rose quartz multiflora	compound inflorescence
Solyc02g077390	s	compound inflorescence	yrh	yellow Reisentraube Heirloom	compound inflorescence
Solyc02g081120	LeT6	class 1 knotted-like homeodomain protein	Cu	Curl	Mid- and lateral veins and petiole greatly foreshortened producing crumpled leaf; homozygous viable.
Solyc02g081120	LeT6	class 1 knotted-like homeodomain protein	Me	Mouse ears	Leaves 3-4 pinnately compound with clavate segments; shortened internodes; homozygous viable; incompletely dominant.
Solyc02g081670	an	anantha	1		Flowers greatly modified; inflorescences compound; closely resembles ca.
Solyc02g081670	an	anantha	e1444	e1444	compound inflorescence and defects in floral meristem/organ identity
Solyc02g081670	an	anantha	e1546	e1546	compound inflorescence and defects in floral meristem/organ identity
Solyc02g081670	an	anantha	e4365	e4365	compound inflorescence and defects in floral meristem/organ identity
Solyc02g085500	o	ovate	1(2s)		Ovate fruits.
Solyc02g085500	o	ovate	ovate-1	ovate 1	Pear shaped fruits.
Solyc02g085870	CER6	beta-ketoacyl-coenzyme A synthase	cer6	cer6	the lecer6 mutant exhibited about 3- to 8-fold increased water loss per unit time and fruit surface area
Solyc02g089160	d	dwarf	1		All parts foreshortened; leaves dark and rugose.
Solyc02g089160	d	dwarf	b	broccoli	"Extreme dwarf; more stunted than d^x; leaves reduced to small, dark green globs of curled, rugose tissue; flowers reduced, with tiny corolla segments."
Solyc02g089160	d	dwarf	cr	crispata	Allele of phenotype intermediate between d and d^x.
Solyc02g089160	d	dwarf	dac1	ac-induced 1	extreme dwarf phenotype
Solyc02g089160	d	dwarf	dac2	ac-induced 2	Extreme dwarf phenotype
Solyc02g089160	d	dwarf	im		All parts foreshortened; leaves dark and rugose.
Solyc02g089160	d	dwarf	prov2		All parts foreshortened; leaves dark and rugose.
Solyc02g089160	d	dwarf	provcr-2	crispata	All parts foreshortened; leaves dark and rugose.
Solyc02g089160	d	dwarf	provcr-3	crispata	All parts foreshortened; leaves dark and rugose.
Solyc02g089160	d	dwarf	provx-2	extreme-2	All parts foreshortened; leaves dark and rugose.
Solyc02g089160	d	dwarf	x	extreme	"Extreme dwarf, all parts foreshortened; leaves dark and rugose; recessive to d and to +."
Solyc02g090890	zep	zeaxanthin epoxidase	hp3	high-pigment 3	
Solyc03g007960	CrtR-b2	beta-carotene hydroxylase-2	wf	white flower	"Corolla color is buff, light tan, or white."
Solyc03g031860	psy1	Phytoene synthase 1	1		Yellow color of ripe fruit flesh.
Solyc03g031860	psy1	Phytoene synthase 1	(1s)		Yellow color of ripe fruit flesh.
Solyc03g031860	psy1	Phytoene synthase 1	(2s)		Yellow fruit flesh; lighter yellow flowers.
Solyc03g031860	psy1	Phytoene synthase 1	prov4		Yellow color of ripe fruit flesh.
Solyc03g031860	psy1	Phytoene synthase 1	prov5		Yellow color of ripe fruit flesh.
Solyc03g031860	psy1	Phytoene synthase 1	y	reddish yellow	Likely allele of r with reddish flesh tones in ripe fruit
Solyc03g083910	sucr	sucrose accumulator	1		"Accumulates predominantly sucrose in mature fruit, rather than glucose and fructose."
Solyc03g114600	asc	Alternaria stem canker resistance	1		Resistance to Alternia stem canker
Solyc03g118160	fa	falsiflora	1		"Giant, vegetative, and highly ramified inflorescence; completely sterile."
Solyc03g119060	div	divaricata	div	divaricata	Small squarrose plant with intercostally yellowish leaves and ventrally purple.
Solyc04g049090	SlMlo1	SlMlo1	ol-2	ol-2	Resistance to powdery mildew (<i>Oidium neolycopersici</i>).
Solyc04g051510	cu3	curl-3	1		"Dwarf, short and thick hypocotyls, curled cotyledons, and dense curly leaves; reduced fertility."
Solyc04g051510	cu3	curl-3	abs1	altered brassinolide sensitivity1	reduces height by 50% compared to wild type tomatoes.
Solyc04g057980	ORR	Orange Ripening	Orr	Orange Ripening	The fruit exhibited orange and yellow sectors.
Solyc04g076850	e	entire	1		Fewer fused leaf segments; midvein distorted
Solyc04g076850	e	entire	2		"Fewer fused leaf segments and distorted midvein, entire or broad leaflets"
Solyc04g076850	e	entire	e0880	e0880	"Simple leaves, asymmetrical sepals and a multifusion phenotype affecting leaves, flowers and fruits"
Solyc04g076850	e	entire	entireAC	entire AC	"Simple leaves, asymmetrical sepals and a multifusion phenotype affecting leaves, flowers and fruits"
Solyc04g076850	e	entire	prov3		Fewer leaf segments; midvein distorted
Solyc04g076850	e	entire	sliaa9	sliaa9	"Single-base cytosine deletion at nucleotide position 629 of SlIAA9 causes expression of simple leaves, as opposed to the compound leaves in the wild type."
Solyc04g082520	cwp1	cuticular water permeability 1	cwp1hir	cwp1 hirsutum	Cwp1<sup>hir</sup> causes microfissuring of cuticle in tomato fruit which results in dehydration of the fruit in <i>S. lycopersicum</i> genetic background.
Solyc05g007850	bsr4	bacterial spot disease resistance protein 4	Bs4-MM		bacterial spot resistance
Solyc05g007850	bsr4	bacterial spot disease resistance protein 4	bs4-pen2963		bacterial spot resistance
Solyc05g009380	lyr	lyrate	1		First leaves entire; later fan shaped; female-sterile.
Solyc05g012020	mc	macrocalyx	1		Sepal large and leaf-like; pedicel joint arthritic; inflorescence indeterminant.
Solyc05g013290	Fen	Fenthion sensitivity	fen	fen	Lack of fenthion sensitivity
Solyc05g013300	Pto	Pseudomonas syringae pv tomato resis.	1		"Resistance to Pseudomonas syringae pv. Tomato, race zero sensitive to insecticide Fenthion."
Solyc05g013300	Pto	Pseudomonas syringae pv tomato resis.	2		Resistance to Pseudomonas syringae pv. tomato.
Solyc05g013300	Pto	Pseudomonas syringae pv tomato resis.	h	hirsutum	Resistance to Pseudomonas syringae without Fenthion sensitivity
Solyc05g013300	Pto	Pseudomonas syringae pv tomato resis.	Pto-2		Resistance to Pseudomonas syringae pv. tomato.
Solyc05g056620	rin	ripening inhibitor	1	rin1	"Fruits green at maturity, later turning bright yellow, retarded ripening."
solyc06g008300	cf2	Cladosporium fulvum resistance-2	1		Resistance to races of Cladosporium fulvum.
Solyc06g034110	aps1	Tomato acid phosphatase	1		
Solyc06g034110	aps1	Tomato acid phosphatase	2		
Solyc06g034110	aps1	Tomato acid phosphatase	n		
Solyc06g051550	fer	fe inefficient	1		Severe chlorosis beginning in first true leaves due to faulty iron transport in xylem.
Solyc06g074240	b	Beta-carotene	1		"High B-carotene, low lycopene in ripe fruit."
Solyc06g074240	b	Beta-carotene	c	crimson	Increased fruit lycopene content; phenotype similar to B^og.
Solyc06g074240	b	Beta-carotene	m	minutum	"High B-carotene, low lycopene in ripe fruit. ."
Solyc06g074240	b	Beta-carotene	og	old gold	Corolla tawny orange; increased fruit lycopene.
Solyc06g074350	sp	self-pruning	+		Indeterminate growth habit.
Solyc06g074350	sp	self-pruning	1		Plant habit determinate.
Solyc06g074350	sp	self-pruning	D	Dominant	Dominant allele; severe determinate growth habit; homozygous lethal. Radiation induced in Stupicka polni ranna.
Solyc06g074350	sp	self-pruning	prov2		Plant habit determinate.
Solyc06g084520	Cul1	Cul1	SlCul1	S. lycopersicum Cullin1	Pollen bearing this allele are rejected on styles of SI species or hybrids.
Solyc06g084520	Cul1	Cul1	SpCul1	S. pennellii Cullin1	"In combination with ui1.1, confers compatibility on styles of S. lycopersicum x S. lycopersicoides (or S. sitiens) allotriploid hybrids."
Solyc07g056570	not	notabilis	1		Dainty and delicate yellow-green leaves; tends to wilt in dry or hot weather.
Solyc07g056580	etr2	ethylene receptor 2	1	etr2 (antisense transgene)	"delayed abscission, shorter internode length, and reduced auxin movement."
Solyc07g062680	la	lanceolate	1		"Simple, entire, and small elongated leaves; slender stems, excessively branched; small fruits; homozygous inviable."
Solyc07g062840	GOB	goblet	gob-1	e1976m1	"Solanum lycopersicum goblet mutants produce simple leaves. Following cotyledon production, the shoot apical meristem terminates but occasionally partially recovers."
Solyc07g062840	GOB	goblet	gob-2	e3883m1	"Solanum lycopersicum goblet mutants produce simple leaves. Following cotyledon production, the shoot apical meristem terminates but occasionally partially recovers."
Solyc07g062840	GOB	goblet	gob-3	n5126m1	"Solanum lycopersicum goblet mutants produce simple leaves. Following cotyledon production, the shoot apical meristem terminates but occasionally partially recovers."
Solyc07g066250	ls	lateral suppresser	1		Few or no axillary branches; corolla suppressed; partially male sterile
Solyc07g066250	ls	lateral suppresser	2		Few or no axillary branches; corolla suppressed; partially male sterile.
Solyc07g066480	flc	flacca	1		"Small, erect, nearly unbranched plant, and later spreading; short, overwilting, yellowish leaves."
Solyc08g080090	gf	green flesh	1		Persistent chlorophyll giving ripe fruit purplish-brown color.
Solyc09g010080	lin5	invertase 5	lin5	brix9-2-5	high fruit sugar content
Solyc09g025210	adh2	alcohol dehydrogenase-2	1		
Solyc09g075440	nr	Never ripe	1		Fruits ripen slowly to dirty orange color; homozygous viable.
Solyc09g075440	Nr2	Never ripe-2	1		"Fruit flesh turns slowly to yellowish green, remains firm"
Solyc09g098130.1.1	sw5	Spotted wilt resistance-5	1		Resistance to to Tomato Spotted Wilt Virus. From L. peruvianum.
Solyc10g044670	phyA	phytochrome A	fri	far red light insensitive	far red light insensitive
Solyc10g079240	sun	sun	Sun	gain of function Sun allele	"Elongated fruit shape, from Sun1642."
Solyc10g081650	crtiso	carotenoid isomerase	1		Fruit flesh and stamens orange colored.
Solyc10g081650	crtiso	carotenoid isomerase	2		Yellowish growing point; light green foliage; resembles t in flower an fruit color
Solyc10g081650	crtiso	carotenoid isomerase	v	virescent	Furit and flower color typical of t; irregular yellowing near growing point.
Solyc10g085570	ctr4	CTR1-like protein kinase-4	AY394002	ctr1	LeCTR4 splice variant
Solyc11g010570	j	jointless	1		Jointless pedicels; proliferates inflorescence.
Solyc11g011260	GAI	GAI	pro	procera	suppressed axillary bud development and altered branching architecture
Solyc11g011990	ptox	plastid terminal oxidase	1	ghost	"Ghost phenotype. Incomplete chlorophyll deficiency, starting green, later breaking to white."
Solyc11g069030	bl	blind	1		Stem terminating in first inflorescence; midribs may develop adventitious shoots.
Solyc11g069030	bl	blind	2		"Determinant growth; few flowered inflorescences; fasciated flowers; enlarged, leafy calxy; less extreme than bl."
Solyc11g069030	bl	blind	to	torosa	"Determinate habit; firm, strongly uprolled pinnae; fasciated flowers and fruits."
Solyc11g071430	i2	Immunity to Fusarium wilt race 2	1		Resistance to Fusarium oxysporum f. lycopersici race 2.
Solyc11g071810	fas	fasciated	1		Fruits many-loculed as in cv. Ponderosa.
Solyc11g071810	fas	fasciated	D	Dominant	Fruits many-loculed; phenotype more extreme than original allele of f; carpels unfused; dominant allele.
Solyc11g071810	fas	fasciated	fas-1	insertional allele	Fruits many-loculed
Solyc12g008980	del	Delta	1		"Reddish-orange mature fruit color, due to inhibition of lycopene, and increase of delta-carotene."
Solyc12g009470	yg2	yellow-green-2	1		Foliage chlorotic yellow-green under all conditions; long hypocotyls.
Solyc12g009470	yg2	yellow-green-2	aud		All foliar parts bright yellow under all conditions.
Solyc12g011330	etr1	ethylene receptor 1	1	etr1 (antisense transgene)	"delayed abscission, shorter internode length, and reduced auxin movement."
AJ002236	cf9	Cladosporium fulvum resistance-9	1		Resistance to specific races of Cladosporium fulvum.
AJ457051	hero	Heterodera rostochiensis resistance	1		Resistance to potato cyst nematode (Globodera rostochiensis).
AB066584	HT-A	HT-A	LeHTA	LeHT-A	non-functional self-incompatibility allele from Solanum lycopersicum (previously known as Lycopersicon esculentum)
AB066582	HT-A	HT-A	SpHTA	SpHT-A	gametophytic self-incompatibility. Solanum peruvianum allele
JF284938	lc	Locule number	1		Locule number is reduced; associated with o.
JF285116	lc	Locule number	lc-1	lc - 2 SNPs	High locule number phenotype is controlled by two single nucleotide polymorphisms (SNP)
SGN-U564276	Mi1-2	Mi-1.2	1	Mi	"High level resistance to root-knot nematode species, including M. incognita, M. arenaria, and M. javanica. Resistance breaks down at soil temperatures above 28 deg. C. Also confers resistance to potato aphid and whitefly."
HQ317907	sit	sitiens	1		"Smaller plant, very weak in field; very short leaves down-curled, overwilting and becoming necrotic."
HQ317908	sit	sitiens	w	Wageningen	"wilty, abscisic acid deficient"
AF536200	tm2	Tobacco mosaic virus resistance-2	1		High-level resistance to many strains of tobacco mosaic virus.
FJ817603	tm2	Tobacco mosaic virus resistance-2	a		High-level resistance to many strains of tobacco mosaic virus.
Solyc02g080490	wo	Wooly	1		All parts densely pubescent; homozygous lethal.
	wo	Wooly	m		Pelage on all parts wooly but less than Wo; homozygous viable; heterozygote intermediate.
	wo	Wooly	mz		All parts densely pubescent; homozygous lethal.
	wo	Wooly	v		Denser hairiness than Wo; homozygous lethal.