Annotations were retrieved from Planteome using the web interface. This was done by querying for annotations to the top level terms from each ontology or aspect, and then filtering to only include annotations to gene objects. The top level terms were:

quality (PATO_0000001)
plant anatomical entity (PO_0025131)
plant structure development stage (PO_0009012)
molecular function (GO_0003674)
biological process (GO_0008150)
cellular component (GO_0005575)



