Reference_id	PubMedId	Author	Title	Journal	Volume	Pages	Year	CGSNL Gene Symbol	Gene Name Synonym
1		Abenes, M.L.P., R.E. Tabien, S.R. McCouch, R. Ikeda, P. Ronald, G.S. Khush and N. Huang	Orientation and integration of the classical and molecular genetic maps of chromosome 11 in rice.	Euphytica	76	81-87.	1994	LA,XA21,ADH1,D27,Z2	la,Xa21*, Xa21, OsXA21,Adh1, Adh1/2, adh1/adh2, OsADH1,d27(d t), dt, dwf23, d27, OsD27,z2
2		Adachi, T.	Dwarfness and leafy head newly found in rice.	Agric. & Hort.	10(4)	1048-1050.	1935	LHD	lhd
3	8103599	Ahn, S. and S.D. Tanksley	Comparative linkage maps of the rice and maize genomes.	Proc. Natl. Acad. Sci. U.S.A.	90	7980-7984.	1993		
4		Ahn, S.N., C.N. Bollich, A.M. McClung and S.D. Tanksley	RFLP analysis of genomic regions associated with cooked-kernel elongation in rice.	Theor. Appl. Genet.	87	27-32.	1993	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
5	7903411	Ahn, S., J.A. Anderson, N.E. Sorrels and S.D. Tanksley	Homologous relationships of rice, wheat and maize chromosome.	Mol. Gen. Genet.	241	483-490.	1993		
6		Amemiya, A. and H. Akemine	Biochemical genetic studies on the root growth inhibiting complementary lethal genes on rice plant.	Bull. Natl. Inst. Agric. Sci., Ser.D	10	139-226.	1963	HWC1,HWC2	Hwc1(L2a),L-2-a, Lr1, Hwc-1, L2a,Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2
7		Ando, I., T. Yoshida and N. Kishimoto	Genetic analysis of some traits of paddy and upland rices using doubled haploids derived from the F1 plants of Kochihibiki x Sensho.	RGN	10	102-105.	1993	SP1,BHC	sp, SP, OsNPF4.1, NPF4.1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
8		Angeles, E.R., G.S. Khush and E.A. Heinrichs	New genes for resistance to whitebacked planthopper in rice.	Crop Sci.	21(1)	47-50.	1981	WBPH2,WBPH1	Wph2,Wph1(Wbph), Wbph1, Wph1
9		Angeles, E.R., G.S. Khush and E.A. Heinrichs	Inheritance of resistance to planthoppers in rice.	Rice Genetics. IRRI, Manila, Philippines.		537-549.	1986	ZLH1,ZLH2,ZLH3	Zlh1,Zlh2,Zlh3
10		Aquino, R.C. and P.R. Jennings	Inheritance and significance of dwarfism in an Indica rice variety.	Crop Sci.	6(6)	551-554.	1966	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
11		Athwal, D.S. and M.D. Pathak	Genetics of resistance to rice insects.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		375-386.	1972	SM	Sm
12		Athwal, D.S., M.D. Pathak, E.H. Bacalangco and C.D. Pura	Genetics of resistance to brown planthopper and green leafhopper in Oryza sativa L.	Crop Sci.	11(5)	747-750.	1971	GLH1,GLH2,GLH3	Glh1,Glh2,Glh3
13		Awan, M.A. and A.A. Cheema	Personal communication.	(Refer to RGN 5: 4)			1988	D59	d59(t), dwf40, d59
14		Berner, D.K. and B.J. Hoff	Inheritance of scent in American long grain rice.	Crop Sci.	26(5)	876-878.	1986	SK1	Sk1, Fgr
15		Bharaj, T.S., S.S. Bains., G.S. Sidhu and M.R. Gagneja	Genetics of fertility restoration of wild abortive' cytoplasmic male sterility in rice, Oryza sativa L.	Euphytica	56	199-203.	1991	RF3,R1*,R2*,RF4	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,R1*,R2*,Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4
16		Brar, D.S., B.G. de los Reyes, O. Panaud, A. Sanchez and G.S. Khush	Genetic mapping in rice using isozyme and RFLP markers.	Rice Genetics. II. IRRI, Manila, Philippines.		137-145.	1991	ADH1,AMP3,EST2,EST1,FDP1,PGI2,G6PD1,GOT3,MAL1	Adh1, Adh1/2, adh1/adh2, OsADH1,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Est1,Fdp1*, Fdp1,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b,G6pd1(t)*, G6pd1,Got3, Aat3,Mal1, Mal I, Mal-I, Mal-1
17		Cai, H.W.	Personal communication.	Personal communication			1995	EST11,AMP5	Est11(t), Est11,Amp5
18		Cai, H.W. and X.K. Wang	Studies on esterase isozymes in relation to origin and differentiation of cultivated rice.	RGN	11	67-69.	1994	EST10,EST2	Est10,Est2, Est_2
19		Cai, H.W. and  X.K. Wang	Four esterase loci newly detected.	RGN	11	83-85..	1994	EST11,EST10,EST13,EST2,EST12	Est11(t), Est11,Est10,Est13,Est2, Est_2,Est12
20		Cai, H.W. and  X.K. Wang	A new locus of esterase in rice. Est-10(t).	Breeding Science	44(Suppl. 2)	176	1994	EST10	Est10
21		Cai, H.W., X.L. Sun and X.K. Wang	New isozyme loci for malate dehydrogenase.	RGN	11	86-88.	1994	MAL3,MAL2,MAL4	Mal3(t)), Mal3,Mal2,Mal4(t)*, Mal4
22		Chandraratna, M.F.	Genetics of photoperiod sensitivity in rice.	J. Genet.	53(2)	215-223.	1955	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
23		Chang, T.T., C.C. Li and B.S. Vergara	Component analysis of duration from seeding to heading in rice by the basic vegetative phase and photoperiod-sensitive phase.	Euphytica	18(1)	79-91.	1969	ISE1	iSe1, i-Se-1
24		Chao, C.Y. and W.L. Hu	The effect of temperature on a desynaptic mutant in rice.	Bot. Bull. Acad. Sin.	2(2)	87-100.	1960	DS1	ds1
25		Chao, C.Y., D. Li and W.L. Hu	A desynaptic mutant in rice.	Bot. Bull. Acad. Sin.	1(1)	29-36.	1960	DS1	ds1
26		Chaudhary, B.P., P.S. Srivastava, M.N. Shrivastava and G.S. Khush	Inheritance of resistance to gall midge in some cultivars of rice.	Rice Genetics. IRRI, Manila, Philippines.		523-527.	1986	GM1,GM2	Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
28		Cheng, R., Y. Ukai and A. Saito	Method of mapping a lethal factor in RFLP linkage map.	Breeding Science	44(Suppl. 2)	192	1994	L	L*
29		Cho, Y.G., M.Y. Eun, Y.H. Kim, T.Y. Chung and Y.A. Chae	The semidwarf gene, sd-1, of rice (Oryza sativa L.).I. Linkage with the esterase locus, EstI-2.	Theor. Appl. Genet.	89	49-53.	1994	EST,SD1	Est I2*, EstI2*, Est15, ESTL2,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
30		Cho, Y.G., M.Y. Eun, S.R. McCouch and Y.A. Chae	The semidwarf gene, sd-1, of rice (Oryza sativa L.).II. Molecular mapping and marker-assisted selection.	Theor. Appl. Genet.	89	54-59.	1994	SD1,PAU,EST	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Pau,Est I2*, EstI2*, Est15, ESTL2
31		Chu, Y.E. and H.I. Oka	The genetic basis of crossing barriers between Oryza perennis subsp. barthii and its related taxa.	Evolution	24	135-144.	1970	DA,DB	Da(D1), Da, D1, Dhl3,Db(D2), D2, Db, Dhl4
32		Chu, Y.E. and H.I. Oka	The distribution and effects of genes causing F1 weakness in Oryza breviligulata and O.glaberrima.	Genetics	70	163-173.	1972	HWB1,HWB2	hwb1(w'a), w'a, hwb1,hwb2(w'b), w'b, hwb2
33		Chung, M.C., C.N. Ning and H.K. Wu	Localization of ribosomal RNA genes on rice chromosome.	Bot. Bull. Acad. Sin.	34	43-55.	1993	R5S2,R5S3,R45S2,R5S1	R5s2*, R5s2,R5s3*, R5s3,R45s2*(rDNA2), rDNA2, R45s2,R5s1*, r5s, R5s1
34		Chuong, P.V. and T. Omura	Studies on the chlorosis expressed under low temperature condition in rice, Oryza sativa L.	Bull. Inst. Trop. Agr. Kyushu Univ.	5	1-58.	1982	CHS2,CHS3,CHS4,CHS1	chs2(t)*, chs2,chs3(t)*, chs3,chs4(t)*, chs4,chs1(t)*, chs1
36		Dhulappanavar, C.V.	Linkage studies in rice (Oryza sativa L.).Flowering, growth habit and pigmentation.	Euphytica	28	435-443.	1979	PNR	Pnr
37		Dutt, K.V.L.N., D.V. Seshu and S.V.S. Shastry	Inheritance of resistance to stem borer in rice.	Indian J. Genet. & Plant Breed.	40(1)	166-171.	1980	SB	Sb, TRP1
38		Ebron, L.A., R.R. Yumol, R. Ikeda and T. Imbe	Inheritance of resistance to rice tungro spherical virus in some rice cultivars.	IRRN	19(4)	10-11.	1994	TSV2,TSV1	tsv2,tsv1(RTSV), RTSV, tsv1
39		Eiguchi, M. and Y. Sano	A gene complex responsible for seed shattering and panicle spreading found in common wild rices.	RGN	7	105-107.	1990	SH3,SPR3,SH	Sh3,Spr3(t), Spr3,Sh(t)*, Sh6
40		Eiguchi, M., H-Y. Hirano, Y. Sano and H. Morishima	Effects of water depth on internodal elongation and floral induction in a deepwater-tolerant rice line carrying the dw3 gene.	Japan. J. Breed.	43	135-139.	1993	DW3	dw3
41		Endo, T.	Differential regulation of peroxidaze isozymes coded by Px-1 locus in rice.	Jpn. J. Genet.	56(2)	175-183.	1981	RCP,REG1-2A,REG2-4A	Rcp,Reg1-2A, Reg1,Reg2-4A, Reg2
42	7247938	Endo, T.	Developmental modification and hybridization of allelic acid phosphatase isozymes in homo- and heterozygotes for the Acp-1 locus in rice.	Biochem. Genet.	19(3/4)	373-384.	1981	ACP1	Acp1
43		Ezuka, A., O. Horino, K. Toriyama, H. Shinoda and T. Morinaka	Inheritance of resistance of rice variety Wase Aikoku 3 to Xanthomonas oryzae.	Bull. Tokai-Kinki Agr. Exp. Stn.	28	124-130.	1975	XA3,XA2	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa2
44		Foster, K.W. and J.N. Rutger	Independent segregation of semi-dwarfing genes and a gene for pubescence in rice.	J. Hered.	69(2)	137-138.	1978	SD2	sd2
45	17248812	Foster, K.W. and J.N. Rutger	Inheritance of semidwarfism in rice, Oryza sativa L.	Genetics	88	559-574.	1978	SD2,SD3	sd2,sd3
46		Fujii, K., Y. Hayano-Saito, A. Shumiya and M. Inoue	Genetical mapping based on the RFLP analysis for the panicle blast resistance derived from a rice parental line St.No.1.	Breeding Science	45(Suppl. 1)	209	1995	PBR*,PBST*	PBR*,Pbst*
47		Fujimaki, H. and S. Hiraiwa	Genetic analyses of male sterile lines induced by artificial mutation.	Japan. J. Breed.	36	401-408.	1986	MS18,MS19,MS20,MS21,MS22,MS23,MS24,MS25,MS26,MS27,MS28,MS30,MS31,MS32,MS33,MS34,MS35,MS36,MS37,MS38,MS39,MS40,MS41,MS42,MS43,MS44,MS45	ms18(t)*, ms18(t), ms18,ms19(t)*, ms19(t), ms19,ms20(t)*, ms20(t), ms20,ms21(t)*, ms21(t), ms21,ms22(t)*, ms22(t), ms22,ms23(t)*, ms23(t), ms23,ms24(t)* (=ms29), ms24(t), ms24,ms25(t)*, ms25(t), ms25,ms26(t)*, ms26(t), ms26,ms27(t)*, ms27(t), ms27,ms28(t)*, ms28(t), ms28,ms30(t)*, ms30,ms31(t)*, ms31,ms32(t)*, ms32,ms33(t)*, ms33,ms34(t)*, ms34,ms35(t)*, ms35,ms36(t)*, ms36,ms37(t)*, ms37,ms38(t)*, ms38,ms39(t)*, ms39,ms40(t)*, ms40,ms41(t)*, ms41,ms42(t)*, ms42,ms43(t)*, ms43,ms44(t)*, ms44,ms45(t)*, ms45
48		Fukuchi, A., Y. Suzuki, H. Hirochika and F. Kikuchi	Linkage relations between the photoperiod sensitivity gene Se-1 and two other genes, Pi-zt and Pgi-2.	RGN	9	47-50.	1992	SE1,PIZ	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
49		Fukuchi, A., A. Nakamura, H. Hirano, H. Hirochika and F. Kikuchi	Linkage analysis for a semidwarfing gene sd-1 on chromosome 1.	RGN	9	50-52.	1992	TOS1,SD1	Tos1*, Tos1, Osr14, Tos4,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
50		Fukuda, A., K. Yamamoto, Y. Harushima, N. Kurata, T. Sasaki, N. Nagamura and Y. Minobe	RFLP mapping of genes related to glycolytic pathway in rice.	Breeding Science	44(Suppl. 1)	239	1994	ALD2,TPI,GPD1,GPD2,ALD1,ALD3	Ald2*(ald2), Ald2, ald2,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,gpd1*, gpd1,gpd2*, gpd2,Ald1*, Ald1,Ald3*(ald1), Ald3, ald1
51		Fukui, K., N. Ohmido and G.S. Khush	Variability in rDNA loci in the genus Oryza detected through fluorescence in situ hybridization.	Theor. Appl. Genet.	87	893-899.	1994	R45S1,R45S3,R45S2	R45s1*(rDNA1), rDNA1, r45s, R45s1,R45s3*, R45s3,R45s2*(rDNA2), rDNA2, R45s2
52		Fukuta, Y.	Genetic analysis of shattering-resistance mutant lines induced from an indica rice variety, Nan-jing 11.4. RFLP mapping of mutant gene in Hokuriku 143 (SR-5).	Breeding Science	45(Suppl. 1)	89	1995	SH4	sh4, sh4(t)*(sh3), sh3, sh4
53		Fukuta, Y., M. Yano and K. Fukui	Linkage analysis of the restorer gene  (Rf-1) in rice using restriction fragment length polymorphism markers.	Japan. J. Breed.	42(Suppl. 1)	164-165.	1992	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
54		Futsuhara, Y.	Breeding of a new rice variety Reimei by gamma-ray irradiation.	Gamma Field Symposia	7	87-109.	1968	SD1,D12,D49	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,d12(d50), dwf11, d50, d12, d32, F71, DMT9,d49(t)
55		Futsuhara, Y. and H. Kitano	Inheritance of a root-growth inhibiting mutant in rice.	RGN	2	70-71.	1985	RT	rt
56		Futsuhara, Y., S. Kondo and H. Kitano	Genetical studies on dense and lax panicles in rice II. Character expression and mode of inheritance of dense panicle rice.	Japan. J. Breed.	29(3)	239-247.	1979	DN2,DN3	Dn2,dn3
57		Ghesquiere, A. and M. Causse	Linkage study between molecular markers and genes controlling the reproductive barrier in interspecific backcross between O.sativa and O. longistaminata.	RGN	9	28-31.	1992	D1,D2	D1*, Da, Dhl1,D2*, Db, Dhl2
58		Glaszmann, J.C.	A verietal classification of Asian cultivated rice (Oryza sativa L.) based on isozyme polymorphism.	Rice Genetics. IRRI, Manila, Philippines.		83-90.	1986	PGI3	Pgi3
59		Goto, I.	Genetic sutdies on the resistance of rice plant to the blast fungus.I. Inheritance of resistance in crosses Sensho x H-79 and Imochishirazu x H-79.	Ann. Phytopath. Soc. Japan	36(5)	304-312.	1970	PISE1,PISE2,PISE3,PIIS1,PIIS2	Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5
60		Goto, I.	Genetic studies on the resistance of rice plant to the blast fungus.II Difference in resistance to the blast disease between Fukunishiki and its parental cultivar, Zenith.	Ann. Phytopath. Soc. Japan	42(3)	253-260.	1976	PIZ,MPI	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,MPi z(Rb6), Rb6, MPiz
61		Goto, I.	Genetic studies on resistance of rice plant to blast fungus (VII).Blast resistance genes of Kuroka.	Ann. Phytopath. Soc. Japan	54	460-465.	1988	PIKUR1,PIKUR2	Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2
62		Goto, I. and Ahmed Ali Baluch	Genetic studies on the resistance of rice plant to the blast fungus.V. Introduction of Pi-se of Sensho to Rikutonorin-mochi-No.4 and to No.26.	Bull. Yamagata Univ. Agr. Sci.	9(2)	121-125.	1983	PISE3,PISE1,PISE2	Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2
63		Goto, I. and Ahmed Ali Baluch	Genetic studies on the resistance of rice plant to the blast fungus.VI. Additive effect of blast resistance genes of Sensho under natural infection. (Preliminary report).	Bull. Yamagata Univ. Agr. Sci.	9(3)	273-283.	1984	PISE2,PISE1	Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1
64		Goto, I., Y.L. Jaw and A.A. Baluch	Genetic studies on resistance of rice plant to blast fungus.IV. Linkage analysis of four genes, Pi-a, Pi-k, Pi-z and Pi-i.	Ann. Phytopath. Soc. Japan	47(2)	252-254.	1981	PIZ,PII,PIK,PIA	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi i, Pii, Pi-i, Pii(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi a, Pia, Pi-a, Pia-1, Pia-2
65		Guiderdoni, E., J.C. Glaszmann and B. Courtois	Segregation of 12 isozyme genes among doubled haploid lines derived from a japonica x indica cross of rice (Oryza sativa L.).	Euphytica	42(1-2)	45-53.	1989	EST1,EST7,ACP4,ACP2,ACP1,POX2,SDH1	Est1,Est7,Acp4,Acp2,Acp1,Pox2,Sdh1, Skd
66		Hara, S.	Linkage between factors for sterility and anthocyanin pigmentation in rice plant.	Jpn. J. Genet.	21(2)	32	1946	SSK,MS1	ssk(sk), sk, ssk,ms1(sf), ms1(t)*, ms64, ms1, sf
67		Hasegawa, H. and M. Inoue	Induction and selection of hydroxy-L-proline resistant mutant in rice (Oryza sativa L.).	Japan. J. Breed.	33(3)	275-282.	1983	HPR1,HPR2(T),HPR3(T)	hpr1,hpr2(t), hpr2,hpr3(t), hpr3
68		Hasegawa, H., S. Mori, M. Inoue and M. Murakami	Hydroxy-L-proline resistant mutant in rice.	RGN	2	88-89.	1985	HPR1,HPR2(T),HPR3(T)	hpr1,hpr2(t), hpr2,hpr3(t), hpr3
69		Hashioka, Y.	Varietal resistance of rice to the sclerotial diseases.(Studies on pathological breeding of rice, IV).	Japan. J. Breed.	1(1)	21-26	1951	SC1,SC2	Sc1, RRs1,Sc2, RRs2
70		Hayano-Saito, Y., K. Saito, K. Fujii, J. Hashimoto and A. Saito	Linkage analysis of the resistance gene to rice stripe disease.	Japan. J. Breed.	43(Suppl. 2)	85	1993	STVB	Stvb(St2), St2, Stvb, Stv2
71		Hayasaka, H., T. Shimano, K. Ebana, Y. Nagamura, M. Yano, T. Sasaki, and K. Matsunaga	RELP mapping of a rice blast resistance gene Pi-b.	Breeding Science	45(Suppl. 1)	92	1995	PIB,PI13	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*
72		Hernandez, J.E. and G.S. Khush	Genetics of resistance to white-backed planthopper in some rice (Oryza sativa L.)varieties.	Oryza Cuttack	18(1)	45-50.	1981	WBPH3,WBPH4	Wph3,wph4
73		Heu, M.H. and G. Shrestha	Genetic analysis of sheathed panicle in a Nepalese rice cultivar Gamadi.	Rice Genetics. IRRI, Manila, Philippines.		317-322.	1986	SHP4,SHP3	Shp4(Gb), Gb, Shp4,Shp3(Ga), Ga, Shp3
74		Heu, M.H. and Y.K. Kim	Inheritance of an opaque endosperm derived from Nepal Indica rice cultivar POKHARELI MASHINO.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	321-324.	1989	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
76		Hirano, H., S. Komatsu, A. Nakamura, F. Kikuchi, H. Kajiwara, S. Tsunasawa and F. Sakiyama	Structural homology between semi-dwarfism-related proteins and glutelin seed protein in rice (Oryza sativa L.).	Theor. Appl. Genet.	83	153-158.	1991	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1
78		Hittalmani, S., M. Foolad, T. Mew, R. Rodriguez and N. Huang	Identification of blast resistance gene, Pi-2(t) in rice plants by flanking DNA markers.	RGN	11	144-146.	1994	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
79		Hong, S.K., H. Kitano, H. Satoh and Y. Nagato	Rice embryogenesis is completed through complicated interactions of many genes. In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	153-157.	1994		
80		Hsieh, R.M., C. Pai and H.K. Wu	Gene for naked-grain rice.	RGN	2	71	1985	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
81		Hsieh, S.C.	Genetic analysis in rice. 1. Coloration genes and inheritance of other characters in rice.	Bot. Bull. Acad. Sin.	1(2)	117-132.	1960	PS3,TSB,D26,LGT,TSA,PS2	Ps3(Ps2), Ps2, Ps3,tsb, ts2,d26, dwf22,lgt,tsa, ts1,Ps2(Ps1), Ps1, Ps2
82		Hsieh, S.C.	Cytogenetic studies and genetic analysis in rice.	Ph.D. Thesis. Hokkaido Univ.		212	1961	IPSA,PS3,PS2,YLB,IPSB	IPsa(IPs1), IPsa, IPs1, Ips3,Ps3(Ps2), Ps2, Ps3,Ps2(Ps1), Ps1, Ps2,ylb, z14,IPsb(IPs2), IPsb, IPs2, Ips4
83		Hsieh, S.C.	Recent advances in rice breeding and genetical studies in Taiwan.	Scientific Agriculture, Taipei.	4(12)	48-68.	1976	PI,D26,D57	Pi(t)*, Pi(t),d26, dwf22,d57[d(x)], dwf38, d(x), d57
84		Hsieh, S.C. and T.M. Chang	Genic analysis in rice. Genes for purple pericarp and other characters.	Japan. J. Breed.	14(3)	141-149.	1964	PRPA,PRPB	Prpa(Pp), Pp, Prpa, Prp1,Prpb(Pb), Pb, Prpb, Prp2
85		Hsieh, S.C. and S.T. Yen	Genic analysis in rice VII. Linkage relations of an induced dwarfness gene, d42.	Bot. Bull. Acad. Sin.	7(1)	82-87.	1966	D42	d42, dwf31
86		Hsieh, S.C. and L.M. Wang	Genetical studies on physico-chemical properties of rice grains.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	325-328.	1989	AM,GT,H(T)*	Am(t)*, Am,Gt(t)*, Gt,H(t)*, Hcr
87		Hu, C.H.	An X-ray induced panicle-degenerating mutant in rice.	Japan. J. Breed.	11(1)	19-23.	1961	PLA1,LHD	pla1, OsPLA1, plt1, CYP78A11,lhd
88		Hu, C.H.	A newly induced semidwarfing gene with agronomic potentiality.	RGN	4	72-74.	1987	SD6	sd6(t), sd6
89		Hu, J. and J.N. Rutger	Pollen characteristics and genetics of induced and spontaneous genetic male-strile mutants in rice.	Plant Breeding	109	97-107.	1992	MS46,MS47,MS48,MS49,MS50,MS55,MS56,MS57,MS58,MS59,MS60,MS61,MS62,MS63,MS53,MS54,MS52,MS51	ms46(t)*, ms46,ms47(t)*, ms47,ms48(t)*, ms48,ms49(t)*, ms49,ms50(t)*, ms50,ms55(t)*, ms55,ms56(t)*, ms56,ms57(t)*, ms57, male sterile-57,ms58(t)*, ms58,ms59(t)*, ms59,ms60(t)*, ms60,ms61(t)*, ms61,ms62(t)*, ms62,ms63(t)*, oms, ms63,ms53(t)*, ms53, male sterile-53,ms54(t)*, ms54,ms52(t)*, ms52,ms51(t)*, ms51
90		Ichii, M., H. Sato, H. Hasegawa and O. Yatou	Genetic analysis of a nitrate reductase deficient mutant in rice.	Japan. J. Breed.	42(Suppl. 1)	382-383.	1992		
91		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu and N. Iwata	Integration of conventional and RFLP linkage maps in rice.I. Chromosomes 1, 2, 3 and 4.	RGN	9	128-129.	1992	D30	d30(d W), dW, dwf26, d30
92		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu, T. Mikoda, H. Satoh and N. Iwata	Integration of conventional and RFLP linkage maps in rice.III. On the arrangement of some marker genes and RELP markers.	Japan. J. Breed.	42(Suppl. 2)	126-127.	1992	G1,SPL2,IBF,SPL10,PGL,SPL1	g1 (lng), lng, g1, ELE, OsG1, G1/ELE,spl2(bl3), spl2, bl3,IBf,spl10,pgl,Spl1, spl1(sl,bl2), sl, bl2, spl1
93		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu, H. Saito and N. Iwata	Integration of conventional and RFLP linkage maps in rice.II. Choromosomes 6, 9, 10 and 11.	RGN	10	87-89.	1993	WX1,SPL10,PGL	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,spl10,pgl
94		Ideta, O., A. Yoshimura, T. Matsumoto, H. Tsunematsu and N. Iwata	Integration of conventional and RFLP linkage maps in rice.IV. On choromosomes 6, 9 and 11.	Japan. J. Breed.	43(Suppl. 2)	100	1993	SPL4,IBF,DP2,DRP2,V9,Z2,DP1	spl4(bl5), spl4, bl5,IBf,dp2,drp2,v9,z2,dp1, pa, DP1/PAL1, PAL1
95		Ideta, O., A. Yoshimura, M. Ashikari and N. Iwata	Integration of conventional and RFLP linkage maps in rice.III. Choromosomes 5, 7, 8 and 12.	RGN	11	116-117.	1994	SPL7,D1,G1,D6,V11,V8,SPL1,RL3,SUG,SPL5	spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,d6(d34), d34, dwf6,v11,v8,Spl1, spl1(sl,bl2), sl, bl2, spl1,rl3(rl1), rl1, rl3, cul10,sug(su), su, sug1, su1, su-1,spl5(bl6,spl5-1), bl6, spl5, SF3b3
96		Ideta, O., A. Yoshimura and N. Iwata	Integration of conventional and RFLP linkage maps in rice.V. The locus of ebisu dwarf (d-2).	Breeding Science	44(Suppl. 2)	185	1994	D2	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 
97		Iida, S. and T. Nishio	Genetic analysis of rice mutants with low allergenic protein.	Japan. J. Breed.	41(Suppl. 2)	352-353.	1991		
98		Iida, S., T. Tohnooka and T. Nishio	RFLP mapping of mutant genes decreasing the contents of rice glutelin.	Japan. J. Breed.	43(Suppl. 2)	92	1993	HPG1*,LGC1	hpg1*, hpg1,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
99		Iida, S., N. Kusaba and T. Nishio	RFLP mapping of mutant genes lacking a glutelin subunit of rice glutelin.	Japan. J. Breed.	44(Suppl. 2)	193	1994	GLU3,GLU2,LGC1	glu3(t)*, glu10, LGLU3,glu2(t)*, glu9, LGLU2,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
100		Ikeda, R.	Studies on the inheritance of resistance to the rice brown planthopper (Nilaparvata lugens Stal) and the breeding of resistant rice cultivars.	Bull. Nat. Agric. Res. Cent.	3	1-54.	1985	BPH1,BPH4,BPH2,BPH3	Bph1,bph4,bph2,Bph3
101		Ikeda, R. and C. Kaneda	Trisomic analysis of the gene Bph 1 for resistance to the brown planthopper. Nilaparvata lugens Stal. in rice.	Japan. J. Breed.	33(1)	40-44.	1983	BPH3,BPH1,BPH2,BPH4	Bph3,Bph1,bph2,bph4
102		Ikeda, R., R.E. Tabien and G.S. Khush	Chromosomal location of Xa-21.	RGN	8	102-103.	1991	XA21	Xa21*, Xa21, OsXA21
103		Ikehashi, H. and H. Araki	Multiple alleles in linkage group I of rice for spikelet sterility in distant crosses.	Japan. J. Breed.	34(Suppl. 2)	226-227.	1984	S5	S5-3, S5-4
104		Ikehashi, H. and H. Araki	Genetics of F1 sterility in remote crosses of rice.	Rice Genetics. IRRI, Manila, Philippines.		119-130.	1986	S5	S5-3, S5-4
105		Ikehashi, H., H. Araki and S. Yanagihara	Screening and analysis of wide compatibility loci in wide crosses of rice.	Rice Genetics. II. IRRI, Manila, Philippines.		33-43.	1991	S5	S5-3, S5-4
106		Imbe, T. and S. Matsumoto	Inheritance of resistance of rice varieties to the blast fungus strains virulent of the variety Reiho.	Japan. J. Breed.	35	332-339.	1985	PISH,PITA	Pi sh, Pish, Pi-sh, Pish(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
107		Inukai, T., M. Maekawa and N. Shinbashi	Gene analysis for spikelet sterility of F1 hybrid between cultivars Silewah and Hayakogane.	RGN	8	110-112.	1991	SA,SB	S A(t)*, S-A(t),S B(t)*, S-B(t)
108		Inukai, T., D.J. Mackill, J.M. Bonman, S. Sarkarung, R. Zeigler, R. Nelson, I. Takamure and T. Kinoshita	Blast resistance genes Pi-2(t) and Pi-z may be allelic.	RGN	9	90-92.	1992	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
109		Inukai, T., D.J. Mackill, J.M. Bonman, S. Sarkarung, R. Zeigler, R. Nelson, I. Takamure and T. Kinoshita	A blast resistance gene Pi-3(t) in near-isogenic line C104PKT.	RGN	9	94-95..	1992	PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
110		Inukai, T., R.J. Nelson, R.S. Zeigler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure and T. Kinoshita	Allelism of blast resistance genes in near-isogenic lines of rice.	Phytopathology	84	1278-1283.	1994	PITA,PIZ,PIK,PI1,PI12,PIKM,PIKS,PII,PI30,PI3	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi-ks, Pi-s, Pik-s, Piks,Pi i, Pii, Pi-i, Pii(t),Pi-30(t), Pi30(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
111		Ise, K.	Linkage analysis of some blast resistance gene in rice, Oryza sativa L.	Japan. J. Breed.	42(Suppl. 2)	388-389.	1991	PII2,PII	Pi i2, Pii2, Pii2(t),Pi i, Pii, Pi-i, Pii(t)
112		Ise, K.	A close linkage between the blast (bl) resistance gene Pi-ta2 and a marker on chromosome 12 in japonica rice.	IRRN	18(2)	14	1993	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
113	18470071	Ishii, T., D.S. Brar, D.S. Multani and G.S. Khush	Molecular tagging of genes for brown planthopper resistance and earliness introgressed from Oryza australiensis into cultivated rice, O.sativa.	Genome	37	217-221.	1994	EF,BPH10	Ef(t)*, ef(t)*, Ef, ef,Bph10(t)*, Bph10
114		Ishikawa, R.	Analysis of two isozyme genes, Mal-1 and Pgi-3 and their frequencies in Indica and Japonica types.	RGN	7	100-103.	1990	PGI3,MAL1	Pgi3,Mal1, Mal I, Mal-I, Mal-1
115		Ishikawa, R.	Localization of gene Gdh-1 for glutamate dehydrogenase.	RGN	8	97-98.	1991	GDH1	Gdh1
116		Ishikawa, R.	Integration of isozyme genes on chromosome 12 into a linkage map.	RGN	8	100-101.	1991	GDH1,ACP1	Gdh1,Acp1
117		Ishikawa, R. and H. Morishima	Linkage analysis for four isozyme loci, Adh-1, Acp-1, Pox-2 and Pgd-2.	RGN	6	109-110.	1989	ADH1,PGD2,POX2,ACP1	Adh1, Adh1/2, adh1/adh2, OsADH1,Pgd2,Pox2,Acp1
118		Ishikawa, R., T. Kinoshita and H. Morishima	Trisomic analysis of genes for isozymes Location of Cat-1, Acp-1 and Pax-2, on chromosomes.	RGN	4	75-76.	1987	CAT1,POX2,ACP1	Cat1, Cat_1,Pox2,Acp1
119		Ishikawa, R., T. Kinoshita and H. Morishima	Linkage analysis of the Pgd-1 locus.	RGN	5	81-82.	1988	PGD1	Pgd1, 6Pgd1
120		Ishikawa, R., H. Morishima, K. Mori and T. Kinoshita	Choromosomal analysis of isozyme loci and the allelic expression at cellular level in rice.- Genetical studies on rice plant, XCVII -.	J. Fac. Agr. Hokkaido Univ.	64(1)	85-98.	1989	PGI1,ADH1,GDH1,CAT1,PGD1,SDH1,AMP2,POX2,ACP2,ACP1	Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a,Adh1, Adh1/2, adh1/adh2, OsADH1,Gdh1,Cat1, Cat_1,Pgd1, 6Pgd1,Sdh1, Skd,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Pox2,Acp2,Acp1
121		Ishikawa, R., M. Niizeki, K. Saito and H. Morishima	Studies on the distorted segregation of isozyme marker genes found in the linkage group d-33 in rice.	Japan. J. Breed.	39(Suppl. 2)	234-235.	1989	SDH1,POX2,ACP1	Sdh1, Skd,Pox2,Acp1
122		Ishikawa, R., H. Morishima, T. Kinoshita, T. Harada, M. Niizeki and K. Saito	Linkage analysis of nine isozyme genes on the conventional linkage map in rice.	Japan. J. Breed.	41(2)	265-272.	1991	ADH1,GDH1,PGD2,AMP3,EST2,PGD1,SDH1,D33,POX2,ACP1,PGI2,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Gdh1,Pgd2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Pgd1, 6Pgd1,Sdh1, Skd,d33(d B), dB, dwf29, d33,Pox2,Acp1,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
123		Ishikawa, R., H. Morishima and T. Kinoshita	Linkage analysis and application of isozyme genes in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		127-136.	1991	ADH1,GDH1,PGD2,AMP3,EST2,PGD1,SDH1,D33,POX2,ACP1,PGI2,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Gdh1,Pgd2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Pgd1, 6Pgd1,Sdh1, Skd,d33(d B), dB, dwf29, d33,Pox2,Acp1,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
124		Isono, Y., H. Satoh and T. Omura	Characteristics of carbohydrate-synthetic mutants, sugary and shrunken, in rice.	Japan. J. Breed.	28(Suppl. 1)	130-131.	1978		
125		Itoh, T., H. Satoh and M.Y. Son	Gene analysis of mutants for 57kDa polypeptides of seed storage proteins in rice.	Japan. J. Breed.	43(Suppl. 2)	103	1993	GLUP4,GLUP3	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
126		Iwata, N.	Exploitation and identification on chloroplast mutants.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		10-19.	1990	D18,FS2,CHL6,V6	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,fs2,chl6,v6
127		Iwata, N. and T. Omura	Linkage analysis by reciprocal translocation method in rice.IV.	Japan. J. Breed.	18(Suppl. 2)	69-70.	1968	LHS1,DL	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,DL, dl(lop), lop, dl, dl1
128		Iwata, N. and T. Omura	Linkage studies in rice (Oryza sativa L).On some mutants derived from chronic gamma irradiation.	Japan. J. Breed.	20(Suppl. 2)	118-119.	1970	FC1,D11,D30,D32,NAL5	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d30(d W), dW, dwf26, d30,d32(d K4,d12), d12, dwf28, dK4, d32,nal5(nal1), nal5, nal1, cul5
129		Iwata, N. and T. Omura	Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L).I. Linkage groups corresponding to the chromosome 1, 2, 3 and 4.	Japan. J. Breed.	21(1)	19-28.	1971	LAX1,D10,EG1,DP1,OPS,RI,DP2,DRP2	lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,eg1, GY1,dp1, pa, DP1/PAL1, PAL1,ops,ri,dp2,drp2
130		Iwata, N. and T. Omura	Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L).II. Linkage groups corresponding to the chromosomes 5, 6, 8, 9, 10 and 11.	Sci. Bull. Fac. Agr. Kyushu Univ.	25(3.4)	137-153.	1971	D11,DP1,DL,SP1,GH2,DP2,D30,TRI,CHL1	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,dp1, pa, DP1/PAL1, PAL1,DL, dl(lop), lop, dl, dl1,sp, SP, OsNPF4.1, NPF4.1,gh2, CAD2, CAD, OsCAD2, GH2 ,dp2,d30(d W), dW, dwf26, d30,tri,chl1, chl1(ch1), ch1
131		Iwata, N. and T. Omura	Studies on the trisomics in rice plants (Oryza sativa L.). III. Relation between trisomics and genetic linkage groups.	Japan. J. Breed.	25(6)	363-368.	1975	FGL,RL4,AL4,AL5,AL7,RK1,AL1,DP2,IBF,BP,PGL,SPL1,RL3,D33,AL3,Z1,AL6,AL2,NAL3	fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,rl4(rl2), rl2, rl4, cul11,al4, alK4,al5, alK5,al7(t), alK7, al7,rk1,al1(alK1), alK1, al1,dp2,IBf,Bp,pgl,Spl1, spl1(sl,bl2), sl, bl2, spl1,rl3(rl1), rl1, rl3, cul10,d33(d B), dB, dwf29, d33,al3, alK3,z1,al6(t), al6, alK6,al2, alK2,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
132		Iwata, N. and T. Omura	Linkage studies in rice (Oryza sativa L.). On some mutants derived from chronic gamma irradiation.	J. Fac. Agr. Kyushu Univ.	21	117-127.	1977	FC1,SPL5,FGL,D27,V1,RL3,BC3,D29,NAL5,RK1,YLM,NL2,Z2,RK2,Z1,GH3,RL4	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,spl5(bl6,spl5-1), bl6, spl5, SF3b3,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,d27(d t), dt, dwf23, d27, OsD27,v1, NUS1,rl3(rl1), rl1, rl3, cul10,bc3, bc-3, OsDRP2B, DRP2B,d29(d K1), dwf25, dK1, d29,nal5(nal1), nal5, nal1, cul5,rk1,ylm,nl2,z2,rk2,z1,gh3,rl4(rl2), rl2, rl4, cul11
133		Iwata, N. and T. Omura	Linkage studies in rice (Oryza sativa L.). Some albino genes and their linkage relation with marker genes.	Sci. Bull. Fac. Agr. Kyushu Univ.	33(1)	11-18.	1978	AL8,AL4,AL5,AL7,AL3,AL6,AL2,AL1	al8, alK8,al4, alK4,al5, alK5,al7(t), alK7, al7,al3, alK3,al6(t), al6, alK6,al2, alK2,al1(alK1), alK1, al1
134		Iwata, N. and T. Omura	Studies on the trisomics in rice plants (Oryza sativa L.). VI. An accomplishment of a trisomic series in japonica rice plants.	Jpn. J. Genet.	59(3)	199-204.	1984	V2,DU1,D18,V3,SUG,GH2,D27,FC1,SP1,D53,NAL3,FS2,RL4,SPL2,D30,GH3,BC3,D29,SPL3,CHL2,CHL1,NAL5,RK1,YLM,NL2,SPL8,OPS,SPL4,CHL4,D51,UR2,Z4,V8,IBF,RK2,Z1,V1,D28,Z2,SPL1,RL3,DRP2,BP,D33,BGL,RFS,FGL	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,du1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,v3, RNRL1, rnrl1, RNR1, RNRL,sug(su), su, sug1, su1, su-1,gh2, CAD2, CAD, OsCAD2, GH2 ,d27(d t), dt, dwf23, d27, OsD27,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,sp, SP, OsNPF4.1, NPF4.1,D53(D K3), DK3, Dwf34, SMXL6/7/8,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,fs2,rl4(rl2), rl2, rl4, cul11,spl2(bl3), spl2, bl3,d30(d W), dW, dwf26, d30,gh3,bc3, bc-3, OsDRP2B, DRP2B,d29(d K1), dwf25, dK1, d29,spl3(bl4), spl3, bl4,chl2,chl1, chl1(ch1), ch1,nal5(nal1), nal5, nal1, cul5,rk1,ylm,nl2,spl8(bl8), spl8, bl8,ops,spl4(bl5), spl4, bl5,chl4,d51(d K8), dwf32, dK8, d51,ur2,z4,v8,IBf,rk2,z1,v1, NUS1,d28(d C), dwf24, dC, d28,z2,Spl1, spl1(sl,bl2), sl, bl2, spl1,rl3(rl1), rl1, rl3, cul10,drp2,Bp,d33(d B), dB, dwf29, d33,bgl, OsRopGEF10, Os RopGEF10, RopGEF10,rfs, cul7, OsRFS,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB
135		Iwata, N., T. Nagamatsu and T. Omura	Abnormal segregation of waxy and apiculus coloration by a gametophyte gene belonging to the first linkage group in rice.	Japan. J. Breed.	14(1)	33-39.	1964	GA1	ga1
136		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice.Linkage groups for 6 genes newly described.	Japan. J. Breed.	27(Suppl. 1)	250-251.	1977	SP1,BC1,DL,NL1,V2,D53,SPL7,LAX1,SPL6,D52,CHL2,SPL3,RI,D28,V4,LA	sp, SP, OsNPF4.1, NPF4.1,bc1, bc-1, OsBC1, CWA1, FP1,DL, dl(lop), lop, dl, dl1,nl1, OsGATA15, GATA15,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,D53(D K3), DK3, Dwf34, SMXL6/7/8,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,spl6,d52(d K2), dK2, dwf33, d52,chl2,spl3(bl4), spl3, bl4,ri,d28(d C), dwf24, dC, d28,v4,la
137		Iwata, N., T. Omura and H. Satoh	Linkage studies in rice (Oryza sativa L.). On some mutants for physiological leaf spots.	J. Fac. Agr. Kyushu Univ.	22	243-251.	1978	EG1,GH2,DL,SPL7,LAX1,SPL6,SPL2,AL2,SPL4,SPL9,SPL1,SPL3,SPL8,SPL5	eg1, GY1,gh2, CAD2, CAD, OsCAD2, GH2 ,DL, dl(lop), lop, dl, dl1,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,spl6,spl2(bl3), spl2, bl3,al2, alK2,spl4(bl5), spl4, bl5,spl9,Spl1, spl1(sl,bl2), sl, bl2, spl1,spl3(bl4), spl3, bl4,spl8(bl8), spl8, bl8,spl5(bl6,spl5-1), bl6, spl5, SF3b3
138		Iwata, N., T. Omura and H. Satoh	Linkage studies in rice. The sequence of genes at the eight and eleventh linkage groups.	Japan. J. Breed.	28(Suppl. 1)	170-171.	1978	GH2,SP1,FC1,D53,DL,BC1,V2,D27,LHS1,D52,SPL3,CHL2,CHL3,CHL1,Z1,D28,V4,LA,Z2	gh2, CAD2, CAD, OsCAD2, GH2 ,sp, SP, OsNPF4.1, NPF4.1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,D53(D K3), DK3, Dwf34, SMXL6/7/8,DL, dl(lop), lop, dl, dl1,bc1, bc-1, OsBC1, CWA1, FP1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,d27(d t), dt, dwf23, d27, OsD27,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,d52(d K2), dK2, dwf33, d52,spl3(bl4), spl3, bl4,chl2,chl3,chl1, chl1(ch1), ch1,z1,d28(d C), dwf24, dC, d28,v4,la,z2
139		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice. On some genes described newly which belonging to the third linkage group.	Japan. J. Breed.	29(Suppl. 1)	234-235.	1979	D18,AL8,CHL5,D54,D55,FS2,CHL6,V6,RL4	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,al8, alK8,chl5,d54(d K5), dK5, d54, dwf35,d55(d K6), dK6, dwf36, d55,fs2,chl6,v6,rl4(rl2), rl2, rl4, cul11
140		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice. New genes belonging to the 11th linkage group.	Japan. J. Breed.	29(Suppl. 2)	182-183.	1979	DL,V5,FC1,V7,V2,D52,Z3,DRP3,SPL3,DRP4,AL10,CHL2,D56,CHL3,CHL1,RL3,BC1,V1,RL5,ST3	DL, dl(lop), lop, dl, dl1,v5,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,v7,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,d52(d K2), dK2, dwf33, d52,z3,drp3,spl3(bl4), spl3, bl4,drp4,al10,chl2,d56(d K7), dwf37, dK7, d56,chl3,chl1, chl1(ch1), ch1,rl3(rl1), rl1, rl3, cul10,bc1, bc-1, OsBC1, CWA1, FP1,v1, NUS1,rl5(rl3), rl5, rl3, cul12,st3(stl), stl, st, st3
141		Iwata, N., H. Satoh and T. Omura	Linkage analysis by use of trisomics in rice (Oryza sativa L. ). IV. Linkage groups locating on chromosomes 2 and 10.	Japan. J. Breed.	31(Suppl. 1)	66-67.	1981	BGL,SPL7,RFS,RC,NL1,G1,V5,NL2,AL3,SPL8,AL6,OPS,RI,AL2,AL9,D6,DRP4,DRP3,SPL5,D1	bgl, OsRopGEF10, Os RopGEF10, RopGEF10,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,rfs, cul7, OsRFS,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,nl1, OsGATA15, GATA15,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,v5,nl2,al3, alK3,spl8(bl8), spl8, bl8,al6(t), al6, alK6,ops,ri,al2, alK2,al9(t), al9,d6(d34), d34, dwf6,drp4,drp3,spl5(bl6,spl5-1), bl6, spl5, SF3b3,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
142		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice.On some marker genes locating on chromosome 12.	Japan. J. Breed.	33(Suppl. 1)	114-115.	1983	D51,UR2,Z4,V8,SUG	d51(d K8), dwf32, dK8, d51,ur2,z4,v8,sug(su), su, sug1, su1, su-1
143		Iwata, N., H. Satoh and T. Omura	Studies on the trisomics in rice plants (Oryza sativa L.). VII. On some marker genes located on chromosome 2 and their sequence on the linkage map.	J. Fac. Agr. Kyushu Univ.	29(2.3)	139-144.	1984	BGL,NL1,SPL7,D1,NL2,SPL8,OPS,AL3,RI,AL2,AL1,Z2,RL3	bgl, OsRopGEF10, Os RopGEF10, RopGEF10,nl1, OsGATA15, GATA15,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,nl2,spl8(bl8), spl8, bl8,ops,al3, alK3,ri,al2, alK2,al1(alK1), alK1, al1,z2,rl3(rl1), rl1, rl3, cul10
144		Iwata, N., H. Satoh and T. Omura	Linkage studies in rice.On the loci of some marker genes locating on the chromosome 5.	Japan. J. Breed.	35(Suppl. 1)	204-205.	1985	FC1,BC1,V2,V1,DL,V5,LHS1,D52,Z3,DRP3,SPL3,DRP4,D56,AL10,CHL2,CHL3,NAL6,CHL1,GH1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,bc1, bc-1, OsBC1, CWA1, FP1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,v1, NUS1,DL, dl(lop), lop, dl, dl1,v5,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,d52(d K2), dK2, dwf33, d52,z3,drp3,spl3(bl4), spl3, bl4,drp4,d56(d K7), dwf37, dK7, d56,al10,chl2,chl3,Nal6, Cul6,chl1, chl1(ch1), ch1,gh1, hg
145		Iwata, N., H. Satoh and A. Yoshimura	Linkage map for Nishimura's chromosome 8.	RGN	6	106-108.	1989	GH2,SPL2,D30,D32,GH3,BL1,BC3,TRI,D29,CHL10	gh2, CAD2, CAD, OsCAD2, GH2 ,spl2(bl3), spl2, bl3,d30(d W), dW, dwf26, d30,d32(d K4,d12), d12, dwf28, dK4, d32,gh3,bl1,bc3, bc-3, OsDRP2B, DRP2B,tri,d29(d K1), dwf25, dK1, d29,chl10
146		Iwata, N., H. Satoh and A. Yoshimura	Linkage studies in rice (Oryza sativa L.). Linkage map of chromosome 3.	Bull. Inst. Trop. Agr. Kyushu Univ.	12	1-9.	1989	D18,A,EG1,D10,LAX1,CHL5,AL8,D54,D55,FS2,PN,RL4,CHL6,AL4,SPL6,V6,SPL2,D32,CHL10	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,A(Sp), Sp, Ap,eg1, GY1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,chl5,al8, alK8,d54(d K5), dK5, d54, dwf35,d55(d K6), dK6, dwf36, d55,fs2,Pn,rl4(rl2), rl2, rl4, cul11,chl6,al4, alK4,spl6,v6,spl2(bl3), spl2, bl3,d32(d K4,d12), d12, dwf28, dK4, d32,chl10
147	7913453	Jena, K.K., G.S. Khush and G. Kochert	Comparative RFLP mapping of a wild rice, Oryza officinalis, and cultivated rice, O.sativa.	Genome	37	382-389.	1994		
148		Jodon, N.E.	Inheritance and linkage relationships of a chlorophyll mutation in rice.	J. Amer. Soc. Agron.	32(5)	342-346.	1940	V1	v1, NUS1
149		Jodon, N.E.	Present status of rice genetics.	J. Agr. Assoc. China	10(N.S.)	5-21.	1955	DW1,V1	dw1(fh1), fh1, dw1,v1, NUS1
150		Jodon, N.E.	Inheritance of some of the more striking character in rice.	J. Hered.	48(4)	181-192.	1957	G2,WH,BL2,CL,LMX	G2(Gm, Gl), Gl, Gm,Wh, Hw,bl2(blm), blm, bl2,Cl,lmx*, lmx
151		Jodon, N.E. and S.J.P. Chilton	Some characters inherited independently of reaction to physiologic races of Cercospora oryzae in rice.	J. Amer. Soc. Agron.	38(10)	864-872.	1946	CE	Ce, Ce1, Ce2
152		Jodon, N.E. and J.G. Atkins	Duplicate blast resistance genes tested for linkage relationship.	Int. Rice Comm. Newsl.	15(3)	28-32.	1966	GF1	gf1
153		Jones, J.W.	Inheritance of natural and induced mutations in Caloro rice and observations on sterile Caloro types.	J. Hered.	43(2)	81-85.	1952	DN1,DN2,SHP1(EX),RL1	Dn1,Dn2,Shp1(Ex), Ex, Shp1,rl1, cul8
154		Kabir, Md. A. and G.S. Khush	Genetic analysis of resistance to brown planthopper in rice (Oryza sativa L).	Plant Breeding	100(1)	54-58.	1988	BPH6,BPH7	Bph6,bph7
155		Kaji, R. and T. Ogawa	RFLP mapping of a blast resistance gene, Pi-k in rice.	Japan. J. Breed.	44(Suppl. 2)	181	1994	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
156		Kaji, R. and T. Ogawa	Identification of the located chromosome of the resistance gene, Xa-7 to bacterial leaf blight in rice.	Breeding Science	45(Suppl. 1)	79	1995	XA7	Xa7
157		Kajiya, H., M. Yano and T. Sasaki	Molecular tagging of the gene wgln(t) conferring glume width in rice.	Breeding Science	45(Suppl. 1)	77	1995	WGL	wgl(t)*, wgl
159		Kaneda, C.	Genetics and breeding of rice for insect resistance -A brief review.	Gamma Field Symposia	27	71-89.	1988	GRH2,SB,GRH1	Grh2,Sb, TRP1,Grh1
160		Katayama, T.	Study on the progeneies of autotriploid and asynaptic rice plants.	Japan. J. Breed.	13(2)	83-87.	1963	AS	as
161		Kato, H., K. Maruyama and H. Araki	Temperature response and inheritance of a thermosensitive genic male sterility in rice.	Japan. J. Breed.	40(Suppl. 1)	352-353.	1990	LKG	Lk g
162		Kato, T.	Genetic analysis on the mutant alleles for long grains induced in a rice cultivar, GIMBOZU.	SABRAO Journal	22(2)	123-129.	1990		
163		Kato, T. and K. Takeda	An allele for long grain found in a mutant line of cultivar Gimbozu.	RGN	9	58-59.	1992	LKG,LKI2,LKI1	Lk g,lki2,lk i1, lki1, lk-i-1
164		Katsuo, K. and U. Mizushima	Studies on the cytoplasmic difference among rice varieties, Oryza sativa L.1. On the fertility of hybrids obtained reciprocally between cultivated and wild varieties.	Japan. J. Breed.	8(1)	1-5	1958	[CMS-CW]	[cms-CW]
165		Kaul, M.L.H.	Male sterility in doubled haploid rice.	RGN	3	109	1986	MS1,MS2	ms1(sf), ms1(t)*, ms64, ms1, sf,ms2 (msd), ms2(t)*, ms65, ms2, msd
166		Kaushik, R.P. and G.S. Khush	Genetic analysis of endosperm mutants in rice Oryza sativa L.	Theor. Appl. Genet.	83	146-152.	1991	FLO2,AE3,FLO1,DU2035,DUEM47,DU2120	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 ,ae3(t)*, ae3,flo1, flo1-1, o,du2035*, du9, du2035,duEM47*, du11, duEM47,du2120*, du10, du2120
167		Kawasaki, T., A. Yoshimura and N. Iwata	Trial construction of chromosome map of rice using reciprocal translocations.	Japan. J. Breed.	41(Suppl. 1)	330-331.	1991		
169		Khush, G.S. and K.C. Ling	Inheritance of resistance to grassy stunt virus and its vector in rice.	J. Hered.	65(3)	134-136.	1974	GSV	Gsv(Gs), Gs, Gsv
170		Khush, G.S. and A.L. Librojo	Naked seed rice (NSR) in allelic to op and lhs.	RGN	2	71-72.	1985	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
171		Khush, G.S. and R.J. Singh	Relationships between linkage groups and cytologically identifiable chromosomes of rice.	Rice Genetics. IRRI, Manila, Philippines.		239-248.	1986	HG	Hg, Fg
172		Khush, G.S. and A. Cruz	New chlorina markers for chromosome 8        (sugary group).	RGN	5	83-84.	1988	CHL8,CHL9	chl8,chl9
173		Khush, G.S. and A. Sanchez	Brittle node, a new marker for chromosome 2.	RGN	10	75-77.	1993	BC5	bc5, bn, bc-5
174	17246212	Khush, G.S. and R.J. Singh, S.C. Sur and A.L. Librojo	Primary trisomics of rice Origin, morphology, cytology and use in linkage mapping.	Genetics	107	141-163.	1984	SUG,D20,V8,SPL1	sug(su), su, sug1, su1, su-1,d20, dwf17,v8,Spl1, spl1(sl,bl2), sl, bl2, spl1
175		Khush, G.S., A.N.M. Rezaul Karim and E.R. Angeles	Genetics of resistance of rice cultivar ARC 10550 to Bangladesh brown planthopper biotype.	J. Genet.	64(2 & 3)	121-125.	1985	BPH5	bph5
176		Khush, G.S., E. Bacalangco and T. Ogawa	A new gene for resistance to bacterial blight from O.longistaminata.	RGN	7	121-122.	1990	XA21	Xa21*, Xa21, OsXA21
177		Khush, G.S., D.S. Multani, B.G. de los Reyes and D.S. Brar	Chromosomal location of Mdh-3 and Pgd-2 loci in rice through monosomic alien addition line (MAAL) analysis.	RGN	8	106-109.	1991	MDH2,MDH3,PGD2	Mdh2(t)*, Mdh2(t), Mdh2,Mdh3*, Mdh3,Pgd2
178		Khush, G.S., D.S. Brar, F.J. Zapata, R. Nelson, S. McCouch and G. Bottrell	Rice biotechnology at IRRI. In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	II.	387-414.	1994	BPH10,GM2,HBV	Bph10(t)*, Bph10,Gm2, Gm-2, GM-2,Hbv
179		Kikuchi, F. and H. Ikehashi	Semidwarfing genes of high-yielding rice varieties in Japan.	Gamma Field Symposia	22	17-30.	1983	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
180		Kikuchi, H. and T. Kinoshita	Genetical study on amylose content in rice endosperm starch. -Genetical studies on rice plant, XCVI-.	Mem. Fac. Agr. Hokkaido Univ.	15(3)	299-319.	1987	AE2,LAM	ae2(t), ae2,lam(t), lam
181		Kinoshita, T.	Gene analysis and linkage map.	In Biology of Rice. S. Tsunoda and N. Takahashi eds. JSSP/Elsevier, Tokyo.		187-274.	1984	D18,RD,D2,BC1,D10,PL,A,D12,WX1,ZN,LHS1,D4,RC,IPL4,BL3,D9,RCN1,BL2,FS1,CL,HLA,UR1,D7,D6,IBF,DN1,SH1,LA,IPL2,D17,ST1,NL1,D14,G1,D3,SP1,D11,C,LAX1,ALK,D1,BHC,D35,GL1,EUI1,BF,BHA,BL5,BL6,CPS,D13,D19,D22,D23,D24,G2,HLB,IPL3,IPL5,MLS1,MLS2,SUG1,YSL,FS2,PN,D5,BL1,BL4,D20,HG,AN3,MI,BHB,Z5,P,PR,ST4,GA6,LG,BC2,ER,GH1,IPL1,ST2,RI,D21,PIN1,WH,AN2,AN1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,Rd, DFR, OsDFR, OS-DFR,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,bc1, bc-1, OsBC1, CWA1, FP1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,Pl, Pl1,A(Sp), Sp, Ap,d12(d50), dwf11, d50, d12, d32, F71, DMT9,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,zn,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,d4, dwf4,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,IPl4,bl3,d9, dwf8,rcn1,bl2(blm), blm, bl2,fs1,Cl,Hla, Hl1,Ur1,d7, dwf7,d6(d34), d34, dwf6,IBf,Dn1,sh1,la,IPl2,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL,nl1, OsGATA15, GATA15,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,sp, SP, OsNPF4.1, NPF4.1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,Bf,Bha(Bh1), Bha, Bh1,bl5,bl6,cps,d13, dwf12,d19(t), dwf16, d19,d22(t), dwf19, d22,d23(t), dwf20, d23,d24(t), dwf21, d24,G2(Gm, Gl), Gl, Gm,Hlb, Hl2,IPl3,IPl5,mls1,mls2,Su g1,ysl,fs2,Pn,d5, dwf5,bl1,bl4,d20, dwf17,Hg, Fg,An3,Mii, Mi1,Bhb(Bh2), Bhb, Bh2,z5,P(Pa,Pb,Pc), A, Pa,Pr(Rp), Rp, Pr,st4(ws2), ws2, st4,ga6,lg,bc2, bc-2,er(o), o, er,gh1, hg,IPl1,st2(gw), gw, st2,ri,d21, dwf18,Pin1,Wh, Hw,An2,An1
182		Kinoshita, T. and M. Takahashi	Supplemental report on genes responsible for pubescence of glumes and leaves in rice plant. -Genetical studies on rice plant, XXII-.	Mem. Fac. Agr. Hokkaido Univ.	6(3)	364-370.	1968	HLB,HLA	Hlb, Hl2,Hla, Hl1
183		Kinoshita, T. and N. Shinbashi	Identification of dwarf genes and their character expression in the isogenic background.	Japan. J. Breed.	32(3)	219-231.	1982	D24,D42	d24(t), dwf21, d24,d42, dwf31
184		Kinoshita, T. and I. Takamure	Inheritance and linkage relationship on zebra chlorosis and zebra necrosis in rice. -Genetical studies on rice plant, LXXXVIII-.	J. Fac. Agr. Hokkaido Univ.	61(4)	445-455.	1984	GA10,Z5,ZN	ga10(t), ga10,z5,zn
185		Kinoshita, T. and M. Maekawa	Inheritance of purple leaf color found in Indica rice. -Genetical studies on rice plant, XCIV-.	J. Fac. Agr. Hokkaido Univ.	62(4)	453-466.	1986	PL,IPL6,SHP2,SHP1(EX)	Pl, Pl1,IPl6,shp2,Shp1(Ex), Ex, Shp1
186		Kinoshita, T. and I. Takamure	Linkage studies by the use of backcross data in rice. -Genetical studies on rice plant, XCV-.	J. Fac. Agr. Hokkaido Univ.	63(1)	136-143.	1986	SPR1,D58	spr1,d58, dwf39
187		Kinoshita, T. and I. Takamure	Gene mapping of the first and second linkage groups in rice.	J. Fac. Agr. Hokkaido Univ.	64(3)	208-217.	1990	IPL5,LKF,LKI1,IPL2,IPL4,D9	IPl5,Lk f, Lkf,lk i1, lki1, lk-i-1,IPl2,IPl4,d9, dwf8
188		Kinoshita, T. and M. Takahashi	The one hunredth report of genetical studies on rice plant. -Linkage studies and future prospects-.	J. Fac. Agr. Hokkaido Univ.	65(1)	1-61.	1991		
189		Kinoshita, T., M. Takahashi, K. Mori and N. Shinbashi	Character expression and inheritance mode of three kinds of dwarf rice. -Genetical studies on rice plant, LXI-.	Res. Bull. Univ. Farm Hokkaido Univ.	19	64-75.	1974	D18,D19,D20,D21	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,d19(t), dwf16, d19,d20, dwf17,d21, dwf18
190		Kinoshita, T., M. Takahashi and S. Sato	Linkage analysis by reciprocal translocation method, with special references to the first linkage group. -Genetical studies on rice plant, LXVII-.	Mem. Fac. Agr. Hokkaido Univ.	9(3)	259-263.	1975	FS1	fs1
191		Kinoshita, T., Y. Hidano and M. Takahashi	A mutant 'long hull sterile' found out in the rice variety, Sorachi. -Genetical studies on rice plant, LXVII-.	Mem. Fac. Agr. Hokkaido Univ.	10(3)	247-268.	1977	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
192		Kishimoto, N., E. Shimosaka, S. Matsuura and A. Saito	A current RFLP linkage map of rice Alignment of the molecular map with the classical map.	RGN	9	118-124.	1992	A,RFS,FGL,NL1,DL,C,DP2,DRP2,BP,SPL1,D33,LA	A(Sp), Sp, Ap,rfs, cul7, OsRFS,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,nl1, OsGATA15, GATA15,DL, dl(lop), lop, dl, dl1,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,dp2,drp2,Bp,Spl1, spl1(sl,bl2), sl, bl2, spl1,d33(d B), dB, dwf29, d33,la
193		Kishimoto, N., M.R. Foolad, E. Shimosaka, S. Matsuura and A. Saito	Alignment of molecular and classical linkage maps of rice, Oryza sativa.	Plant Cell Rep.	12	457-461.	1993		
194		Kishimoto, N., H. Itoh, Y. Ohashi and A. Saito	RFLP mapping of a coding sequence for rice peroxidase detection of a locus different from those determined by isozyme analysis.	Jpn. J. Genet.	69	101-104.	1994	POXCA	Pox cA*, Pox6
195		Kishimoto, N., K. Higo, H. Higo and A. Saito	The coding sequence for rice seed catalase detects a locus different from that determined by isozyme analysis.	Theor. Appl. Genet.	87	625-626.	1994	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
196		Kishimoto, N., H. Higo, K. Abe, S. Arai, A. Saito and K. Higo	Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.	Theor. Appl. Genet.	88	722-726.	1994	OC2,OC1,AS,ALD2,ARF2,ALD1,ARF1	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1,as,Ald2*(ald2), Ald2, ald2,Arf2*, Arf2, ARF-2,Ald1*, Ald1,Arf1*, Arf1, ARF-1
197		Kitada, K. and T. Omura	Genetic control of meiosis in rice Oryza sativa L. II. Cytogenetical analyses of desynaptic mutants.	Jpn. J. Genet.	58	567-577.	1983	DS10,DS11,DS2,DS4,DS5,DS6,DS7,DS8,DS9,DS3	ds10(t), ds10,ds11(t), ds11,ds2(t), ds2,ds4(t), ds4,ds5(t), ds5,ds6(t), ds6,ds7(t), ds7,ds8(t), ds8,ds9(t), ds9,ds3(t), ds3
198		Kitamura, E.	Studies on cytoplasmic sterility of hybrids in distantly related varieties of rice, Oryza sativa L. I. Fertility of the F1hybrids between strains derived from a certain Philippine x Japanese variety crosses and Japanese varieties.	Japan. J. Breed.	12(2)	81-84.	1962	[CMS-TA]	[cms-TA]
199		Kitamura, E.	Studies on cytoplasmic sterility of hybrids in distantly related varieties of rice, Oryza sativa L. II. Analysis of nuclear genes in Japanese varieties controlling cytoplasmic sterility.	Japan. J. Breed.	12(3)	166-168.	1962	[CMS-TA]	[cms-TA]
200		Kitano, H. and Y. Futsuhara	Inheritance and gene expression of a root-growth inhibiting mutant in rice (Oryza sativa L.).	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	349-352.	1989	RT	rt
201		Kiyosawa, S.	The inheritance of resistance of the Zenith type varieties of rice blast fungus.	Japan. J. Breed.	17(2)	99-107.	1967	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
202		Kiyosawa, S.	Inheritance of a particular sensitivity of the variety Sekiguchi Asahi to pathogens and chemicals and linkage relationship with blast resistance genes.	Bull. Natl. Inst. Agric. Sci., Ser.D	21	61-71.	1970	SL,PITA,PIK	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
203		Kiyosawa, S.	Genetics of blast resistance.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		203-225.	1972	PITA,PIA,PIZ,PII,PIB,PIT,PIK,PII2	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi a, Pia, Pi-a, Pia-1, Pia-2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi i, Pii, Pi-i, Pii(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi i2, Pii2, Pii2(t)
204		Kiyosawa, S.	Identification of blast-resistance genes in some varieties.	Japan. J. Breed.	28(4)	287-296.	1978	PIK,PIKH,PIZ,PIKM,PIB,PIM	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km
205		Ko, T. and H. Yamagata	Studies on the induction of male-sterile strains in rice. 8. Linkage relationship of male-sterility genes to marker genes.	Japan. J. Breed.	35(Suppl. 2)	86-87.	1985	MS14,MS10	ms14,ms10
206		Ko, T. and H. Yamagata	Gene analysis of male sterility induced in rice. Studies on the utility of artificial mutations in plant breeding. VI.	Japan. J. Breed.	37	192-198.	1987	MS11,MS12,MS13,MS15,MS16,MS17,MS7,MS14,MS10,MS9,MS8	ms11,ms12,ms13,ms15,ms16,ms17,ms7,ms14,ms10,ms9,ms8
207		Ko, T. and H. Yamagata	Studies on the induction of male-sterile strains in rice. 9. Linkage groups of few male-sterility genes.	Japan. J. Breed.	39(Suppl. 1)	234-235.	1989	MS17,MS8,MS7,MS10	ms17,ms8,ms7,ms10
208		Kobayashi, A., C. Kaneda, R. Ikeda and H. Ikehashi	Inheritance of resistance to green rice leafhopper, Nephotettix cincticeps, in rice.	Japan. J. Breed.	30(Suppl. 1)	56-57.	1980	GRH2,GRH1	Grh2,Grh1
209		Komori, T., Y. Okumoto, T. Tanisaka and H. Yamagata	Studies on the utlilization of a mutator induced in rice. 6. Identification of the location of the slender-glume gene.	Japan. J. Breed.	42(Suppl. 1)	150-151.	1992	SLG	slg, Rurm1, Urm1
210		Kudo, M.	Genetical and breeding studies on physiological and ecological characters in hybrids between ecological groups of rice.	Bull. Natl. Inst. Agric. Sci., Ser.D	19	1-84.	1968	SE1,ALK	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
211		Kumamaru, T., H. Satoh, N. Iwata, T. Omura and M. Ogawa	Mutants affecting storage protein in rice seed.	RGN	3	101-103.	1986	ESP2,ESP1	esp2(rsp2), rsp2, esp2, PDIL1-1,esp1(rsp1), rsp1, esp1
212		Kumamaru, T., H. Satoh, N. Iwata, T. Omura and M. Ogawa	Mutants for rice storage proteins. III. Genetic analysis of mutants for storage protein bodies in the srarchy endosperm.	Jpn. J. Genet.	62(4)	333-339.	1987	ESP1,ESP2,ESP3	esp1(rsp1), rsp1, esp1,esp2(rsp2), rsp2, esp2, PDIL1-1,esp3(rsp3), rsp3, esp3
214		Kumamaru, T., H. Satoh, T. Omura and M. Ogawa	Location of a mutant gene for rice storage protein esp-3 on Nishimura's choromosome 9.	RGN	6	108-109.	1989	ESP3	esp3(rsp3), rsp3, esp3
215		Kumamaru, T., H. Satoh, T. Omura and M. Ogawa	Mutants for rice storage proteins. IV. Maternally inherited mutants for storage proteins of protein bodies in the starchy endosperm.	Heredity	64(1)	9-15.	1990	ESP1,ESP3,ESP4,ESP2	esp1(rsp1), rsp1, esp1,esp3(rsp3), rsp3, esp3,Esp4, 10/16-H,esp2(rsp2), rsp2, esp2, PDIL1-1
216		Kumamaru, T., M. Ogawa and H. Satoh	Mutants for rice storage proteins.	Rice Genetics. II. IRRI, Manila, Philippines.		201-209.	1991	ESP3,ESP4,ESP1,ESP2	esp3(rsp3), rsp3, esp3,Esp4, 10/16-H,esp1(rsp1), rsp1, esp1,esp2(rsp2), rsp2, esp2, PDIL1-1
217		Kumar, I. and H.L. Sharma	Inheritance of grain threshability in rice.	Euphytica	31	815-816.	1982	TH	Th
218		Kumar, R.V. and S.S. Virmani	Wide compatibility in rice (Oryza sativa L.).	Euphytica	64	71-80.	1992	WC	Wc*(S5-n,S-n), Wc1
219		Kurata, N., Y. Harushima, Y. Nagamura, K. Yamamoto, J-Z. Wu, A. Antonio, N. Sue, A. Shomura, T. Toyama, Y. Miyamoto, T. Kirihara, A. Miyao, T. Sasaki, M. Yano and Y. Minobe	Our current RELP maps of rice.	RGN	9	130-132.	1992		
220		Kurata, N., M. Yano, Y. Minobe and M. Gale	Conservation of genome structure between rice and wheat.	Bio/technology	12	276-278.	1994	ADH2,ANT,OCP,ACT1,SALT,CDC,SOD,ATP,SAL2,PKC2,HSP2*,HSP4*,GCW2,ELF2,PKC1,GCW4,ALD3,ALD2,TRYP	Adh2*, Adh2,ant, ricANC1, ANC1,ocp*, ocp,act1, AC1, RAC1, RAc1, ACT11, OsACT1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,cdc*, cdc,sod*, sod,ATP*(atp1), ATPX, atp1,sal2*, sal3,pkc2*, pkc2,hsp2*, hsp2,hsp4*, hsp4,gcw2*, gcw2,elf2*, elf2,pkc1*, pkc1,gcw4*,Ald3*(ald1), Ald3, ald1,Ald2*(ald2), Ald2, ald2,TRYP*(tin), TRYP*, tin, Tryp
221		Kuriyama, H. and M. Kudo	Complementary genes Ph and Bh controlling ripening-black coloration of rice hulls and their geographical distribution.	Japan. J. Breed.	17(1)	13-19.	1967	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
222		Kwak, T.S., B.S. Vergara, J.S. Nanda and W.R. Coffman	Inheritance of seedling cold tolerance in rice.	SABRAO Journal	16	83-86.	1984	CTS1	Cts1
223		Lakshminarayana, A. and G.S. Khush	New genes for resistance to the brown planthopper in rice.	Crop Sci.	17(1)	96-100.	1977	BPH3,BPH1,BPH4	Bph3,Bph1,bph4
224		Lee, H.Y. and T. Kameya	Selection and characterization of a rice mutant resistant to 5-methyltryptophan.	Theor. Appl. Genet.	82	405-408.	1991	R5MT	R5MT*
225		Li, T., T. Takano, Y. Nagamura and G. Takeda	Linkage analysis of rice lactate dehydrogenase gene.	RGN	11	109-111.	1994	WX1,LDH*	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Ldh*, Ldh1
226		Li, T., T. Takano, Y. Nagamura and G. Takeda	Characterization and RFLP mapping of rice lactate dehydrogenase gene.	Breeding Science	44(Suppl. 1)	19	1994	WX1,LDH*	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Ldh*, Ldh1
227		Liang, C.Z., M.H. Gu, X.B. Pan, G.H. Liang and L.H. Zhu	RFLP tagging of a new semidwarfing gene in rice.	Theor. Appl. Genet.	88	898-900.	1994	SDG	sdg*, sd11
228		Librojo, A.L. and G.S. Khush	Chromosomal location of some mutant genes through the use of primary trisomics in rice.	Rice Genetics. IRRI, Manila, Philippines.		249-255.	1986	EUI1,BC4,CHL7,MP2,YGL,AUL,MP1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,bc4, bc-4,chl7,mp2,ygl*, ygl,aul,mp1
229		Lin, S.Y. and H. Ikehashi	A gamete eliminator indicated by Est-9 in chromosome 7 of rice (Oryza sativa L.).	Japan. J. Breed.	41(Suppl. 1)	350-351.	1991	EST9,GA11	Est9 (Est c1), Est8, Estcl, Est c1, Est_9,ga11
230		Lin, S.Y. and H. Ikehashi	A gamete abortion locus detected by segregation distortion of isozyme locus Est-9 in wide crosses of rice       (Oryza sativa L.).	Euphytica	67	35-40.	1993	EST9,GA11	Est9 (Est c1), Est8, Estcl, Est c1, Est_9,ga11
231		Lin, S.Y., Y. Nagamura, N. Kurata, M. Yano, Y. Minobe and T. Sasaki	DNA markers tightly linked to genes, Ph, alk and Rc.	RGN	11	108-109.	1994	RC,ALK,BHC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
232		Lin, X., G. Yu, D. Zhang, Y. Xie and Y. Chen	Chromosomal location of genes for bacterial blight resistance found in Yunnan variety, Donguno.	RGN	8	124	1991	XA A*,XA K*	Xa a*, XAA, Xaa*, Xaa,xa k*, XAK, xak*, xak
233		Ling, D.H., C.Y. Lieng, R. Ma and M.F. Chen	Somaclonal male-sterile mutants in Indica rice.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	737-740.	1989	[CMS-54257]	[cms-54257]*, [cms-54257]
234		Liu, A., Q. Zhang and H. Li	Location of a gene for wide-compatibility in the RFLP linkage map.	RGN	9	135-136.	1992	S5,WC	S5-3, S5-4,Wc*(S5-n,S-n), Wc1
235		Lu, Y.G. and G.Q. Zhang	Breeding for an isogenic restorer line of CMS Zhen-shan 97A.	RGN	3	89	1986	RF4,RF3	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
236		Mackill, D.J. and J.N. Rutger	The inheritance of induced-mutant semidwarfing gene in rice.	J. Hered.	70(5)	335-341.	1979	SD4	sd4
237		Mackill, D.J. and J.M.Bonman	Inheritance of blast resistance in near-isogenic lines of rice.	Phytopathology	82	746-749.	1992	PITA,PI1,PIZ,PI3,PI30	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi-30(t), Pi30(t)
238		Mackill, D.J., S.R.M. Pinson and J.N. Rutger	Frizzy panicle, an EMS-induced mutant in the Japonica cultivar M-201.	RGN	9	100-102.	1992	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1
239		Mackill, D.J., M.A. Salam, Z.Y. Wang and S.D. Tanksley	A major photoperiod-sensitivity gene tagged with RFLP and isozyme markers in rice.	Theor. Appl. Genet.	85	536-540.	1993	PS,PGI2	PS*,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b
240		Maeda, H., I. Takamure, T. Kinoshita and O. Kamijima	Identification of RAPD markers linked to the semidwarfing gene at the sd-1 locus in rice.	Japan. J. Breed.	43(Suppl. 2)	91	1993	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
241		Maeda, H., T. Ishii, I. Takamure, T. Kinoshita and O. Kamijima	Molecular mapping of semidwarfing gene, sd-1, using RAPD and RFLP markers.	Breeding Science	45(Suppl. 1)	93	1995	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
242		Maekawa, M.	Studies on genetical difference between distantly related rice varieties.	Mem. Fac. Agr. Hokkaido Univ.	13(2)	146-177.	1982	BHB,RF1,GA7,ST4,GA6,BHA,RF1B,RF2,BHC,RF1C,RF1D	Bhb(Bh2), Bhb, Bh2,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,ga7,st4(ws2), ws2, st4,ga6,Bha(Bh1), Bha, Bh1,RF1b, Rf-1B, PPR7,Rf2 (Rfx), Rfx, Rf2,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,Rf-1C,Rf-1D
243		Maekawa, M.	Location of floury endosperm gene in the second linkage group.	RGN	2	57-58.	1985	FLO2	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 
244		Maekawa, M.	Allelism test for the genes responsible for sheathed panicle.	RGN	3	62-63.	1986	SHP2,SHP1(EX)	shp2,Shp1(Ex), Ex, Shp1
245		Maekawa, M.	A new zabra-leaf mutant obtained from anther culture.	RGN	4	79-80.	1987	Z6	z6
246		Maekawa, M.	A new leaf stripe gene st-5, its linkage with d-2 and the location of gene P in the second linkage group.	RGN	5	85-87.	1988	ST5	st5
247		Maekawa, M.	A new allele at the lg locus expressing short ligules.	RGN	5	87-89.	1988	LG	lg
248		Maekawa, M. and F. Kita	Interaction of eui gene for the elongation of uppermost internode and some genes for the elongation of internode.	Japan. J. Breed.	33(Suppl. 1)	124-125.	1983	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
249		Maekawa, M. and F. Kita	New gametophyte genes located in the third linkage group (Chromosome 3) of rice.	Japan. J. Breed.	35(1)	25-31.	1985	GA9,GA7	ga9,ga7
250		Maekawa, M. and T. Inukai	Genes linked with d-2 in rice.	Japan. J. Breed.	42(Suppl. 2)	212-213.	1992	GA12,SHP5	ga12,shp5(t), shp5
251		Maekawa, M. and T. Inukai	Hybrid sterility caused by anther indehiscence between distantly related rice varieties.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	85-91.	1994	SA,SB,SC	S A(t)*, S-A(t),S B(t)*, S-B(t),S C(t)*
252		Maekawa, M., T. Kinoshita and M. Takahashi	A new gametophyte gene in the second linkage group of rice (Genetical studies on rice plant, LXXVI).	J. Fac. Agr. Hokkaido Univ.	60(2)	107-114.	1981	GA6	ga6
253		Maekawa, M., T. Maekawa, N. Shinbashi and T. Kinoshita	Allelism of genes for elongation of uppermost internode from two different sources.	RGN	6	101-103.	1989	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
254		Maekawa, M., T. Inukai and N. Shinbashi	A new gene for leaf stripe (st-6) found in linkage group 3.	RGN	7	108-109.	1990	HG,ST6	Hg, Fg,st6(t), st6
255		Maekawa, M., T. Inukai and N. Shinbashi	Spikelet sterility in F1 hybrids between rice varieties Silewah and Hayakogane.	Japan. J. Breed.	41(2)	359-363.	1991	SA,SB	S A(t)*, S-A(t),S B(t)*, S-B(t)
256		Maekawa, M., I. Takamure and T. Kinoshita	Gene mapping of some morphological traits and chlorophyll deficiency in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		111-120.	1991	DL,SHP2,SHP1(EX),LKF,LKI1,RCN2,ST5,ZN,LG,Z6,RCN1,DP,RFS,LHS1	DL, dl(lop), lop, dl, dl1,shp2,Shp1(Ex), Ex, Shp1,Lk f, Lkf,lk i1, lki1, lk-i-1,rcn2,st5,zn,lg,z6,rcn1,dp(t)*, dp3, dp,rfs, cul7, OsRFS,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
257		Malik, S.S. and G.S. Khush	A new allele of Amp-4 in a traditional rice cultivar.	RGN	11	88-89.	1994	AMP4	Amp4
258		Martinez, C,R. and G.S. Khush	Sources and inheritance of resistance to brown planthopper in some breeding lines of rice.	Crop Sci.	14(2)	264-267.	1974	IBPH1	IBph1
259		Maruyama, K., H. Araki and H. Kato	Thermosensitive genetic male sterility induced by irradiation.	Rice Genetics. II. IRRI, Manila, Philippines.		227-235.	1991	TMS2,TMS2	tms2, ms81, tms-2,tms2
261		Matsunaka, S.	Utilization of artifical mutant rice for fundamental researches of herbicidal mechanisms.	JARQ	6	189-194.	1972	PRS	prs
262		Matsuo, T., M. Yano, H. Satoh and T. Omura	Location of gene shr-1 on chromosome 3.	RGN	3	60-61.	1986	RL4,SHR1	rl4(rl2), rl2, rl4, cul11,shr1, sh1, shr
263		Matsuo, T., M. Yano, N. Iwata and T. Omura	Gene shr-2 located on chromosome 12.	RGN	3	61-62.	1986	SHR2	shr2, sh2
264		Matsuura, S., M. Yano and A. Saito	Linkage analysis of two ribosomal DNA genes in rice.	Japan. J. Breed.	41(Suppl 1)	320-321.	1991	R45S2,R45S1	R45s2*(rDNA2), rDNA2, R45s2,R45s1*(rDNA1), rDNA1, r45s, R45s1
265		Matsuura, S., M. Yano and A. Saito	Location of two rDNA genes by linkage analysis in rice.	RGN	8	136-139.	1991	R45S1,R45S2	R45s1*(rDNA1), rDNA1, r45s, R45s1,R45s2*(rDNA2), rDNA2, R45s2
266		McCouch, S.R., G. Kochert, Z.H. Yu, Z.Y. Wang, G.S. Khush, W.R. Coffman  and S.D. Tanksley	Molecular mapping of rice chromosomes.	Theor. Appl. Genet.	76	815-829.	1988	R45S1,R5S1	R45s1*(rDNA1), rDNA1, r45s, R45s1,R5s1*, r5s, R5s1
267		McCouch, S.R., M.L. Abenes, R. Angeles, G.S. Khush and S.D. Tanksley	Molecular tagging of a recessive gene, xa-5, for resistance to bacterical blight of rice.	RGN	8	143-145.	1991	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
268		McCouch, S.R., G.S. Khush and S.D. Tanksley	Tagging genes for disease and insect resistance via linkage to RFLP markers.	Rice Genetics. II. IRRI, Manila, Philippines.		443-449.	1991	WBPH1,XA4	Wph1(Wbph), Wbph1, Wph1,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
269		McCouch, S.R., R.J. Nelson, J. Tohme and R.S. Zeigler	Mapping of blast genes in rice.	In Rice Pyricularia oryzae Disease. R.S. Zeigler et al. (eds.), C.A.B. International, Wallingford, UK.		167-186.	1994	PI6	Pi6(t)*, Pi6, Pi-6(t), pi6(t)
270		McKenzie, K.S. and J.N. Rutger	A new semidwarf mutants in a large grain rice cultivar.	Crop Sci.	26(1)	81-84.	1986	SD5	sd5
271		Mew, T.V., A.S. Parco, S. Hittalmani, T. Inukai, R. Nelson, R.S. Zeigler and N. Huang	Fine-mapping of major genes for blast resistance in rice.	RGN	11	126-128.	1994	PIZ,PITA,PI1,PI30	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-30(t), Pi30(t)
272		Min, S., X. Li, Z. Xiong and G. Hu	Genetic analysis of resistance to whitebacked planthopper Sogatella furcifera Horvath in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		263-267.	1991	WPH6(T)*	Wph6(t)*, Wph6(t), Wph6
273		Mir, G.N. and G.S. Khush	Genetics of resistance to bacterial blight in rice (Oryza sativa L.).	Indian J. Genet. & Plant Breed.	51(1)	72-78.	1991	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
274		Misro, B.	Linkage studies in rice (Oryza sativa L.). 10. Identification of linkage groups in indica rice.	Oryza Cuttack	18(4)	185-195.	1981	PD,PLA1,BD2,PC,PJ,PJB,PLG,PLM,PM,PMR,PSH,PU,PX,PAU,BD1	Pd, Pd(a), Pd(b),pla1, OsPLA1, plt1, CYP78A11,bd2,Pc,Pj,Pjb,Plg,Plm(Pla), Pla, Plm,Pm(Sp), Sp, Pm,Pmr(Plm), Plm, Pmr,Psh,Pu,Px,Pau,bd1
275		Mitra, S.K. and P.M. Ganguli	Some observations on the characters of wild rice hybrids.	Indian J. Agr. Sci.	2(3)	271-279.	1932	SPR2	Spr2
276		Mitsunaga, S., T. Tashiro and J. Yamaguchi	Identification and characterization of gibberellin-insensitive mutants from among dwarf mutants of rice.	Theor. Appl. Genet.	87	705-712.	1994	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
277		Miyamoto, M., M. Saito, I. Ando, O. Kamada, T. Akatuka and S. Kawasaki	High resolution mapping of rice blast resistance gene Pi-b.	Japan. J. Breed.	43(Suppl 2)	220	1993	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
278		Miyamoto, M., K. Rybka, Y. Tanaka, M. Kataoka, I. Ando and S. Kawasaki	Physical mapping of the rice blast resistance genes by using restriction enzymes.	Breeding Science	44(Suppl. 2)	191	1994	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
279		Mohan, M., S. Nair, J.S. Bentur, U.P. Rao and J. Bennett	RFLP and RAPD mapping of the rice Gm2 gene that confers resistance to biotype 1 of gall midge (Orseolia oryzae).	Theor. Appl. Genet.	87	782-788.	1994	GM2	Gm2, Gm-2, GM-2
280		Mori, K.	Inheritance of susceptible mutant in rice plant to herbicide bentazon.	Japan. J. Breed.	34(Suppl. 1)	340-341.	1984	BZS	bzs, bol
281		Mori, K. and M. Takahashi	Differentiation of multiple alleles for anthocyanin color character of apiculus in Indica rice varieties.-Genetical studies on rice plant, LXXXI-.	Japan. J. Breed.	31(3)	226-238.	1981	A,P	A(Sp), Sp, Ap,P(Pa,Pb,Pc), A, Pa
282		Mori, K., T. Kinoshita and M. Takahashi	Linkage relationships of genes for some mutant characters of rice kept in Kyushu University. -Genetical studies on rice plant, LV-.	Mem. Fac. Agr. Hokkaido Univ.	8(4)	377-385.	1973	DL,NAL2,NAL1,RL2,DP2	DL, dl(lop), lop, dl, dl1,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4,rl2, cul9,dp2
283		Mori, K., T. Kinoshita and M. Takahashi	Segregation distortion and its causation of an endosperm character in crosses of distantly related rice varieties.-Genetical studies on rice plant, LVIII-.	Mem. Fac. Agr. Hokkaido Univ.	9(1)	74-86.	1973	GA4,GA5	ga4(gaA), gaA, ga4,ga5(gaB), gaB, ga5
284		Mori, K., T. Kinoshita and M. Takahashi	The new distribution gene for anthocyanin coloration, Pin1 found in Indica rice. Genetical studies on rice plant LXXV.	Japan. J. Breed.	31(1)	49-56.	1981	PIN1	Pin1
285		Morinaka, T., K. Toriyama and Y. Sakurai	Inheritance of resistance to black streaked dwarf disease in rice.	Japan. J. Breed.	19(2)	74-78.	1969	BSV	Bsv(Bs), Bs, Bsv
286		Morinaka, T., K. Toriyama and Y. Sakurai	Inheritance of resistance to yellow dwarf disease in rice.	Japan. J. Breed.	20(1)	22-28.	1970	YDV	Ydv
287		Morishima, H.	Isozyme.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		112-119.	1990	GDH1,PGD2,RL3,D33,NAL3	Gdh1,Pgd2,rl3(rl1), rl1, rl3, cul10,d33(d B), dB, dwf29, d33,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
288		Morishima, H.	Association between Pox-1 variation and seed productivity potential in wild rice.	Rice Genetics. II. IRRI, Manila, Philippines.		1-9.	1991	POX1	Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74
289		Morishima, H. and J.C. Glaszmann	Current status of isozyme gene symbols.	RGN	7	50-57.	1990	SUD1,SUD2,SUD3,TPIL(T)*	Sud1(t)*, Sud1(t), Sud1,Sud2(t)*, Sud2(t), Sud2,Sud3(t)*, Sud3(t), Sud3,Tpil(t)*, Tpi1(t), Tpi1
290		Murai, M., N. Shinbashi, A. Kusutani, S. Hirose, I. Takamure and T. Kinoshita	Identification of dwarf genes in rice lines, Yukara dwarf and Fukei 71, and its response to environmental factors.	Japan. J. Breed.	40(1)	33-45.	1990	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
292		Nadaf, S.K., J.V. Goud and R. Parameswarappa	Genetic studies in rice   (Oryza sativa L.). XVI. Inheritance of panicle type and spreading panicle branch.	Indian J. Genet. & Plant Breed.	52(4)	411-415.	1992	ISPR1,ISPR2,SPRA,SPRB,LAX1	ISpr1*, ISpr1,ISpr2*, ISpr2,Spra*,Sprb*,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
293		Nagai, I. and S. Hara	On the inheritance of leaf spot disease in rice.	Jpn. J. Genet.	5(3, 4)	140-144.	1930	HE	He
294		Nagamatsu, T. and T. Omura	Linkage study of the genes belonging to the first chromosome in rice.	Japan. J. Breed.	12(4)	231-236.	1962	ST1,DP1	st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL,dp1, pa, DP1/PAL1, PAL1
295		Nagamine, T.	Genic control of tolerance to chilling injury at seedling stage in rice, Oryza sativa L.	Japan. J. Breed.	41(1)	35-40.	1991	CTS2	Cts2(t), Cts2
296	14943677	Nagao, S.	Genic analysis and linkage relationship of characters in rice.	Adv. Genet.	4	181-212.	1951	C,CLW,PL,CPS,GL1,PN,G1,D5,TRI,PR,ST2,D4,FS1,D6,LA,BC1,RD,A,D3,RC,NL1,D2,D1	C, Cp, OsC1, Os-C1, OsMyb6, Myb6,clw,Pl, Pl1,cps,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,Pn,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,d5, dwf5,tri,Pr(Rp), Rp, Pr,st2(gw), gw, st2,d4, dwf4,fs1,d6(d34), d34, dwf6,la,bc1, bc-1, OsBC1, CWA1, FP1,Rd, DFR, OsDFR, OS-DFR,A(Sp), Sp, Ap,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,nl1, OsGATA15, GATA15,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
297		Nagao, S. and M. Takahashi	Some genes responsible for yellow, brown and black color glume. -Genetical studies on rice plant, XVI-.	Japan. J. Breed.	4(1)	25-30.	1954	BHC,BHA,BHB,IBF	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,Bha(Bh1), Bha, Bh1,Bhb(Bh2), Bhb, Bh2,IBf
298		Nagao, S. and M. Takahashi	Trial construction of twelve linkage groups in Japanese rice. (Genetical studies on rice plant, XXVII).	J. Fac. Agr. Hokkaido Univ.	53(1)	72-130.	1963	LAX1,SP1,D2,BF,RC,HLB,WX1,SUG1,GL1,PN,G1,D5,BL1,AN1,HG,AN3,D11,WH,P,PR,LG,AN2,GH1,IPL1,ST2,RI,D4,FS1,CL,HLA,UR1,D7,D6,IBF,DN1,SH1,LA,RD,BC1,A,PL,D3,C,NL1,BHC,D1	lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,sp, SP, OsNPF4.1, NPF4.1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,Bf,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Hlb, Hl2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Su g1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,Pn,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,d5, dwf5,bl1,An1,Hg, Fg,An3,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,Wh, Hw,P(Pa,Pb,Pc), A, Pa,Pr(Rp), Rp, Pr,lg,An2,gh1, hg,IPl1,st2(gw), gw, st2,ri,d4, dwf4,fs1,Cl,Hla, Hl1,Ur1,d7, dwf7,d6(d34), d34, dwf6,IBf,Dn1,sh1,la,Rd, DFR, OsDFR, OS-DFR,bc1, bc-1, OsBC1, CWA1, FP1,A(Sp), Sp, Ap,Pl, Pl1,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,nl1, OsGATA15, GATA15,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
299		Nagao, S., M. Takahashi and T. Kinoshita	Genetical studies on rice plant, XXV. Inheritance of three morphological characters, pubescence of leaves and floral glumes, and deformation of empty glumes.	J. Fac. Agr. Hokkaido Univ.	51(2)	299-314.	1960	SUG1,HG,HLA,D7	Su g1,Hg, Fg,Hla, Hl1,d7, dwf7
300		Nagao, S., M. Takahashi and T. Kinoshita	Genetical studies on rice plant, XXVI. Mode of inheritance and causal genes for one type of anthocyanin color character in foregin rice varieties.	J. Fac. Agr. Hokkaido Univ.	52(1)	20-50.	1962	IPL1,IPL2,PL,IPL3	IPl1,IPl2,Pl, Pl1,IPl3
301		Nagao, S., M. Takahashi and K. Morimura	Genetical studies on rice plant, XXVIII. Causal genes and their linkage relationships of some morphological characters introduced from foreign rice varieties.	Mem. Fac. Agr. Hokkaido Univ.	5(2)	89-96.	1964	RL1,DRP1,BL2,CL	rl1, cul8,drp1,bl2(blm), blm, bl2,Cl
302		Nakagahra, M.	Genetic mechanism on the distorted segregation of marker genes belonging to the eleventh linkage group in cultivated rice.	Japan. J. Breed.	22(4)	232-238.	1972	GA2,GA3	ga2,ga3
303		Nakagahra, M.	Genic analysis for esterase isoenzymes in rice cultivars.	Japan. J. Breed.	27(2)	141-148.	1977	EST1,EST3,EST2	Est1,Est3,Est2, Est_2
304		Nakagahra, M.	New distorted inheritance of the markers located on chromosome 3 in wide crosses of rice, Oryza sativa L.	Bull. Natl. Inst. Agric. Sci., Ser.D	32	15-44.	1981	GA8	ga8
305		Nakagahra, M.	Geographical distribution of esterase genotypes of rice in Asia.	RGN	1	118-119.	1984	EST2	Est2, Est_2
306		Nakagahra, M.	Exploitation of isozyme genes and their mapping.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		120-129.	1990	AMP1,EST1,SDH1,EST3	Amp1(Lap1,LapF), LapF, Lap1, Amp1,Est1,Sdh1, Skd,Est3
307		Nakagahra, M. and K. Hayashi	Detection of esterase isozyme loci of Oryza sativa L.	Japan. J. Breed.	26(Suppl .1)	114-115.	1976	GA2,GA3,GA1,GA4,EST2	ga2,ga3,ga1,ga4(gaA), gaA, ga4,Est2, Est_2
308		Nakagahra, M., T. Omura and N. Iwata	Gametophyte genes and their loci on the eleventh linkage group of cultivated rice.	Japan. J. Breed.	22(6)	305-312.	1972	GA2,GA3	ga2,ga3
309		Nakagahra, M., T. Omura and N. Iwata	New certation gene on the first linkage group found by inter-subspecific hybridization of cultivated rice.	J. Fac. Agr. Kyushu Univ.	18	157-167.	1974	GA4	ga4(gaA), gaA, ga4
310		Nakai, H.	Genetic analysis of the induced mutants of rice resistant to bacterial leaf blight.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	777-780.	1989	XA NM(T)*	xa nm(t)*
311		Nakamura, A., H. Hirano and F. Kikuchi	A protein gene Srp(t) linked with a semidwarfing gene sd-1 in rice (Oryza sativa L. ).	Japan. J. Breed.	41(3)	517-521.	1991	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1
312		Nakamura, A., H. Hirano and F. Kikuchi	Identification and genetic analysis of semidwarfism-related proteins in rice (Oryza sativa L. ).	Theor. Appl. Genet.	81(3)	376-380.	1991	GLU1	Glu1(Srp1, Gt2), Srp, Gt2, Glu1
313		Nakamura, A., S. Komatsu, B.S. Xia and H. Hirano	Linkage analysis of gene loci for seed glutelin (Glu-1), semidwarf (sd-1) and shattering habit  (sh-2) in rice (Oryza sativa L.).	Breeding Science	45	185-188.	1995	SD1,GLU1,SH2	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Glu1(Srp1, Gt2), Srp, Gt2, Glu1,sh2
314		Nakamura, I.	A rice mutant showing accelerated internode overgrowth.	RGN	9	61-62.	1992	AO	ao
315		Nakamura, Y., Y. Nagamura, N. Kurata and Y. Minobe	Linkage localization of the starch branching enzyme I (Q-enzyme 1) gene in rice.	Theor. Appl. Genet.	89	859-860.	1994	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
316		Nakazaki, T., H. Yamagata, M. Yamamoto, K. Ichitani and T. Tanisaka	RFLP analysis for anthocyanin pigmentation genes of a mutant line in rice.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	II.	459-465.	1994	C	C, Cp, OsC1, Os-C1, OsMyb6, Myb6
317		Nemoto, H., R. Ikeda and C. Kaneda	New genes for resistance to brown planthopper, Nilaparvata lugens Stal, in rice.	Japan. J. Breed.	39(1)	23-28.	1989	BPH8,BPH9	bph8,Bph9, BPH9/26
318		Nishio, T. and S. Iida	Mutant having a low content of 16-kDa allergenic protein in rice (Oryza sativa L. ).	Theor. Appl. Genet.	86	317-321.	1993	FLO	flo(t)*, flo3
320		Noda, T. and A. Ohuchi	A new pathogenic race of Xanthomonas campestris pv. oryzae and inheritance of resistance of differential rice variety, Te-tep to it.	Ann. Phytopath. Soc. Japan	55	201-207.	1989	XA16	Xa16
321		Nozue, F., M. Umeda, Y. Nagamura, Y. Minobe and H. Uchimiya	Molecular cloning and expression analysis of rice phosphoglucose (PGI) genes.	Breeding Science	44(Suppl. 1)	29	1994	PGI2,PGI1	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
322		Oba, S., F. Kikuchi and K. Maruyama	Genetic analysis of semidwarfness and grain shattering of Chinese rice varity Ai-Jio-Nan-Te.	Japan. J. Breed.	40(1)	13-20.	1990	SH2	sh2
323		Ogawa, T.	Performance of the resistance gene, Xa-7 to Philippine and Japanese races of bacterial leaf blight pathogen in rice.	Breeding Science	45(Suppl. 1)	208	1995	XA7	Xa7
324		Ogawa, T. and T. Yamamoto	Inheritance of resistance to bacterial blight in rice.	Rice Genetics. IRRI, Manila, Philippines.		471-479.	1986	XA3,XA11	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa11(Xa pt), Xa11, Xapt
325		Ogawa, T., T. Morinaka, K. Fujii and T. Kimura	Inheritance of resistance of rice varieties Kogyoku and Java 14 to bacterial group V of Xanthomonas oryzae.	Ann. Phytopath. Soc. Japan	44(2)	137-141.	1978	XA3,XA12	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa12(Xa kg), Xakg, Xa12
326		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	The relationship between genes Xa-3 and Xa-6 for resistance to rice bacterial blight.	RGN	3	79-80.	1986	XA3,XA4	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
327		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Inheritance of resistance to bacterial blight in Sateng. -A reinvestigation.	RGN	3	80-82.	1986	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
328		Ogawa, T., R.E. Tabien, G.A. Busto, G.S. Khush and T.W. Mew	The relationship between Xa-3, Xa-4 and Xa-4b for resistances to rice bacterial blight.	RGN	3	83-84.	1986	XA3,XA4	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
329		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Relationship among Xa-3, Xa-4 and Xa-4b resistant genes to rice bacterial leaf blight.	Japan. J. Breed.	37(Suppl. 1)	176-177.	1987	XA4,XA3	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
330		Ogawa, T., L. Lin, R.E. Tabien and G.S. Khush	A new recessive gene for resistance to bacterial blight of rice.	RGN	4	98-100.	1987	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
331		Ogawa, T., H. Kaku and T. Yamamoto	Resistance gene of rice cultivar, Asaminori to bacterial blight of rice.	Japan. J. Breed.	39(Suppl. 1)	196-197.	1989	XA17	Xa17
332		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Genetics of resistance in rice cultivars, Zenith and Cempo Selak to Philippine and Japanese races of bacterial blight pathogen.	Japan. J. Breed.	40(2)	183-192.	1990	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
333		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Genetics of resistance in rice cultivar, Sateng to Philippine and Japanese races of bacterial blight pathogen.	Japan. J. Breed.	40(3)	329-338.	1990	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
334		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Genetics of resistance in rice cultivars, IR20 and Semora Mangga to Philippine and Japanese races of bacterial blight pathogen.	Japan. J. Breed.	40(4)	435-447.	1990	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
335		Ogawa, T., T. Yamamoto, G.S. Khush and T.W. Mew	Resistance and its inheritance to bacterial blight of IR8 rice cultivar group.	Japan. J. Breed.	41(2)	211-221.	1991	XA11	Xa11(Xa pt), Xa11, Xapt
336		Ogi, Y., H. Kato, K. Maruyama, A. Saito and F. Kikuchi	Identification of RFLP markers closely linked to the semidwarfing gene at the sd-1 locus in rice.	Japan. J. Breed.	43	141-146.	1993	SH2	sh2
337		Ogihara, Y., K. Isono and A. Saito	Toward construction of synteny maps among cereal genomes. I. Molecular characterization of cereal genomes as probed by rice genomic clones.	Jpn. J. Genet.	69	347-360.	1994		
338		Ohshima, I. and F. Kikuchi	Identification of a recessive inhibitor for photoperiod sensitivity gene, Se-1, in photoperiod-insensitive varieties of Indica type rice.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	93-100.	1994	SE1,ISE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,iSe1, i-Se-1
339		Ohshima, I., F. Kikuchi, Y. Watanabe and C. Asahi	Genetic analysis of heading time in a cross between two Indica varieties with inhibitor genes for photoperiod sensitivity.	Japan. J. Breed.	43	101-106.	1993	SE1,SE4	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Se4(t)
340		Ohshima, I., K. Odaka, Y. Morooka, K. Nomura, F. Kikuchi, K. Maruyama, H. Kato, N. Kishimoto and A. Saito	Linkage analysis of a photoperiod-sensitive gene locus (Se-1) with RFLP markers in rice.	Japan. J. Breed.	43(Suppl. 1)	147	1993	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
341		Oka, H.I.	Phylogenetic differentiation of the cultivated rice plant. I. Variation of various characters and character combinations among rice varieties.	Japan. J. Breed.	3(2)	33-43.	1953	GL2	gl2
342		Oka, H.I.	The mechanism of sterility in the intervarietal hybrid. (Phylogenetic differentiation of the cultivated rice plant. VI).	Japan. J. Breed.	2(4)	217-223	1953	S A1(S1,X1)	s a1(s1,x1), s1, s a1, x1
343		Oka, H.I.	Phylogenetic differentiation of cultivated rice. XV. Complementary lethal genes in rice.	Jpn. J. Genet.	32(2)	83-87.	1957	HWA1,HWA2	Hwa1(L1a), L-1-a(La), L1a, Hwa1,Hwa2(L1b), L-1-b(Lb), L1b, Hwa2
344		Oka, H.I.	Genic analysis for the sterility of hybrids between distantly related varieties of cultivated rice.	J. Genet.	55(3)	397-409.	1957	SC2,SC1	s c2,s c1
345	17248657	Oka, H.I.	Analysis of genes controlling F1 sterility in rice by the use of isogenic lines.	Genetics	77	521-534.	1974	S A2(S2),SD2,S E1,S E2,S A1(S1,X1),S D1	s a2(s2), x2, s2, s a2,s d2,s e1,s e2,s a1(s1,x1), s1, s a1, x1,s d1
346		Oka, H.I.	Phylogenetic differentiation of cultivated rice, XXI. The sporophytic pollen sterility its genetic basis and intervarietal relationships as shown by F1 sterility.	Jpn. J. Genet.	53(6)	397-410.	1978	SA2,SB1,SA1,SB2	S A2(A2), S A2, A2,S B1(B1), B1, S B1,S A1(A1), A1, S A1,S B2(B2), S B2, B2
347		Oka, H.I.	Analysis of genes for stigma coloration in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		97-110	1991	IPS1,IPS3,PS3,P,PS2,PS1	IPs1*, IPs1,IPs3*, IPs2,Ps3(Ps2), Ps2, Ps3,P(Pa,Pb,Pc), A, Pa,Ps2(Ps1), Ps1, Ps2,Ps1
348		Oka, H.I. and Y, Doida	Phylogenetic differentiation of cultivated rice. XX. Analysis of the genetic basis of hybrid breakdown in rice.	Jpn. J. Genet.	37(1)	24-35.	1962	SA2,SB1,SA1,SB2	S A2(A2), S A2, A2,S B1(B1), B1, S B1,S A1(A1), A1, S A1,S B2(B2), S B2, B2
350		Okumoto, T., T. Tanisaka and H. Yamagata	Genetical analysis for heading trait of rice varieties in Japan. 7. Linkage relationship between heading-date gene E1 and blast-resistance gene Pi-z.	Japan. J. Breed.	34(Suppl. 1)	292-293.	1984	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
351		Okumoto, T., T. Tanisaka and H. Yamagata	Heading-time genes of the rice varieties grown in south-west-warm region in Japan.	Japan. J. Breed.	41(1)	135-152.	1991	E2,E3,E1	,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
352		Okumoto, T., H. Aizawa, T. Tanisaka and H. Yamagata	Identification of the chromosome carrying the late-heading gene, E1.	Japan. J. Breed.	41(Suppl. 1)	334-335.	1991	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
353		Okumoto, T., A. Yoshimura, T. Tanisaka and H. Yamagata	Analysis of a rice variety Taichung 65 and its isogenic early-heading lines for late-heading genes E1, E2 and E3.	Japan. J. Breed.	42	415-429.	1992	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
354		Okumoto, Y., H. Inoue and T. Tanisaka	Difference of the heading-time genes of a rice variety Taichung 65 from those of Japanese rice varieties.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	131-138.	1994	SE1,E2,E3,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
355		Okuno, K.	Inheritance of induced mutations in rice, Oryza sativa L. and their application for rice breeding.	Bull. Natl. Inst. Agric. Sci., Ser.D	34	187-274.	1983	CHL7	chl7
356		Okuno, K., H. Fuwa and M. Yano	A new mutant gene lowering amylose content in endosperm starch of rice, Oryza sativa L.	Japan. J. Breed.	33(4)	387-394.	1983		
357		Omura, T., N. Iwata and H. Satoh	Linkage studies in rice (Oryza sativa L.). On some virescent and chlorina mutants.	J. Fac. Agr. Kyushu Univ.	23	85-93.	1978	V2,CHL4,DL,V4,V5,CHL2,CHL3,CHL1,V3,FC1,V1	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,chl4,DL, dl(lop), lop, dl, dl1,v4,v5,chl2,chl3,chl1, chl1(ch1), ch1,v3, RNRL1, rnrl1, RNR1, RNRL,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,v1, NUS1
358		Oosumi, T., A. Miyazaki, H. Uchimiya, F. Kikuchi and M. Yokoo	Analysis of glucose phosphate isomerase in near-isogenic lines and cultivars of rice (Oryza sativa L.).	Bot. Mag. Tokyo.	102	283-289.	1989	SE1,PGI2	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b
359		Pai, C. and P.Y. Fu	Genetic analysis for peroxidase and acid phosphatase isozymes in cultivated rice.	Agron. Bull. (Nat. Chung Hsing Univ. Taichung)	2	75-85.	1977	POX3	Pox3
360		Pai, C. and S.M. Jan	Linkage analysis for two loci of peroxidase isozymes in rice.	Genome	30(Suppl. 1)	289	1988	MPOX1,POX1	M Pox1(M px1), MPx1, MPox1, Pox7,Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74
361	4781373	Pai, C., T. Endo and H.I. Oka	Genic analysis for peroxidase isozymes and thier organ specificity in Oryza perennis and O.sativa.	Can. J. Genet. Cytol.	15(4)	845-853.	1973	RLB-4C,RLS-4C,POX1	RLB-4C, Reg3,RLS-4C, Reg4,Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74
362		Pai, C., T. Endo and H.I. Oka	Genic analysis for acid phosphatase isozymes in Oryza perennis and O.sativa.	Can. J. Genet. Cytol.	17(4)	637-650.	1975	ACP3,ACP2	Acp3,Acp2
363		Parco, A., G. Magpantay, G. Second, R. Rodriguez and N. Huang	Restriction fragment length polymorphism and linkage analysis of rice alpha-amylase gene family.	RGN	11	137-140.	1994	AMY3E,AMY2A,AMY3D,AMY3C,AMY1B,AMY3A,AMY1C,AMY3B,AMY1A	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A
364		Pavithran, K.	Genetics of male sterility and nude panicle in rice (Oryza sativa L.).	In Crop Improvement Research Proceeding 4th International SABRAO Congress	1983	141-147.	1983	NP,MP2	np*, np,mp2
365		Pavithran, K., P.T. Annie, R. Shyla, C.P.S. Kumar and B. Shobha	Developmental genetic studies in rice, Oryza sativa L.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	397-400.	1989	MP1,CL	mp1,Cl
366		Petpisit, V., G.S. Khush and H.E. Kauffman	Inheritance of resistance to bacterial blight in rice.	Crop Sci.	17(4)	551-554.	1977	XA5,XA2,XA4,XA3,XA1	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa2,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa1(Xe), Xe, Xa1, Xa-1
367		Pham, J.L., J.C. Glaszmann, R. Sano, P. Barbier, A. Ghesquiere and G. Second	Isozyme markers in rice genetic analysis and linkage relationships.	Genome	33(3)	348-359.	1990	EST6,ACP3,EST8,PGI3,EST5,GOT1,AMP1,GOT3,ICD1,ENP1,GOT2,AMP3,EST2,EST1,EST7,EST9,POX3,POX4,AMP2,EST3,PGD1,POX2,ACP2,ACP1,SDH1,MDH1,PGI2	Est6,Acp3,Est8,Pgi3,Est5,Got1, Aat1, OsAAT, GOT-A,Amp1(Lap1,LapF), LapF, Lap1, Amp1,Got3, Aat3,Icd1,Enp1*, Enp1,Got2, Aat2,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Est1,Est7,Est9 (Est c1), Est8, Estcl, Est c1, Est_9,Pox3,Pox4,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Est3,Pgd1, 6Pgd1,Pox2,Acp2,Acp1,Sdh1, Skd,Mdh1,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b
368		Poonyarit, M., D.J. Mackill and B.S. Vergara	Genetics of photoperiod sensitivity and critical daylength in rice.	Crop Sci.	29(4)	647-652.	1989	SE3	Se3(t), Se3
369		Poonyarit, M., D.J. Mackill and B.S. Vergara	Two genes affecting photoperiod sensitivity in rice.	RGN	4	87-89.	1987	SE3	Se3(t), Se3
370		Prasad, K. and R. Seetharaman	Inheritance of grain size and its interrelationship in rice.	Indian J. Genet. & Plant Breed.	51(3)	352-356.	1991	ANA,ANB,CG,IANA,IANB,KR1,KR2,S	Ana*,Anb*,cg*, cg,IAna*,IAnb*,Kr1*, Kr1,Kr2*, Kr2,s Kr*, skr
371		Ramiah, K. and K. Ramaswami	Floating habit in rice.	Indian J. Agr. Sci.	11(1)	1-8.	1941	DW1,DW2	dw1(fh1), fh1, dw1,dw2(fh2), dw2, fh2, FH2, OsFH2
372		Ranjhan, S., J.C. Glaszmann and G.S. Khush	Localization of Pgi-1, Sdh-1, Est-9 and Adh-1 on rice chromosomes by trisomic analysis.	RGN	3	56-58.	1986	ADH1,EST9,SDH1,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9,Sdh1, Skd,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
373		Ranjhan, S., J.C. Glaszmann, D.A. Ramirez and G.S. Khush	Choromosomal localization of four isozyme loci by trisomic analysis in rice (Oryza sativa L.).	Theor. Appl. Genet.	75	541-545.	1988	ADH1,EST9,SDH1,PGI1	Adh1, Adh1/2, adh1/adh2, OsADH1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9,Sdh1, Skd,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
374		Ranjhan, S., J.C. Litts, M.R. Foolad and R.L. Rodriguez	Chromosomal localization and genomic organization of alpha-amylase genes in rice (Oryza sativa L.).	Theor. Appl. Genet.	82	481-488.	1991	AMY3D,AMY3B,AMY3E,ADH2,ADH1,AMY3A,AMY2A,AMY1B,EM,AMY1C,AMY1A,AMY3C	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Adh2*, Adh2,Adh1, Adh1/2, adh1/adh2, OsADH1,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C
375		Rao, C.H. and R. Seetharaman	Genetic studies in pericarp and hull colour in rice.	Indian J. Genet. & Plant Breed.	33(3)	319-323.	1973	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
376		Ratho, S.N. and S.B. Pradhan	Cytoplasmically controlled cold tolerance in a cytoplasmic-genetic male sterile line of rice.	Euphytica	58	241-244.	1991	[CMS-KALINGA-I]	[cms-Kalinga-I]*, [cms-Kalinga-I]
377		Razzaque, C.A.	A female sterile mutant in rice.	SABRAO Journal	7(1)	99-102.	1974	FES3	Fes3(Fes2), Fs, Fes3
378		Reddy, C.D.R., Y.S. Nerkar and M.B. Misal	Genetic control of iron deficiency chlorosis tolerance in rice.	RGN	6	115-116.	1989	IC	ic*, Ic
379		Reyes, B.G. de los, D.S. Brar and G.S. Khush	Identification of four new isozyme loci in rice.	RGN	6	103-106.	1989	DIA1,DIA2,XDH1,FDP1	Dia1(t)*, Dia1,Dia2(t)*, Dia2,Xdh1(t)*, Xdh1(t), Xdh1,Fdp1*, Fdp1
380		Reyes, B.G. de los, D.S. Brar and G.S. Khush	Linkage between z-9 and Pgi-1 markers of chromosome 3 in rice.	RGN	10	86-87.	1993	Z9	z9
381		Rezaul Karim, A.N.M. and M.D. Pathak	New genes for resistance to green leaf hopper Nephotettix virescens (Distant) in Oryza sativa L.	Crop Prot.	1(4)	483-490.	1982	GLH7,GLH6	Glh7,Glh6
382		Rha, E.S., F.S. Thseng and S.T. Wu	Distorted segregation of Acp-1 for acid phosphatase in a wide cross of rice.	RGN	11	106-108.	1994	GA13	ga13
383			The rice RFLP linkage map as of Feb. 25, 1993. RFLP linkage map, part 1, 2, 3.	RGN	2(1)	11-13	1993		
384		Rodriguez, R.L., N. Huang, T. Sutliff, S. Ranjhan, E. Karrer and J. Litts	Organization, structure and expression of the alpha-amylase multigene family.	Rice Genetics. II. IRRI, Manila, Philippines.		417-429.	1991	AMY2A,AMY3B,AMY3D,AMY3A,AMY1C,AMY3C,AMY1A,AMY3E,AMY1B	Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
385		Ronald, P.C. and S.D. Tanksley	Genetic and physical mapping of the bacterial blight resistance gene Xa-21.	RGN	8	142-143.	1991	XA21	Xa21*, Xa21, OsXA21
386	1362973	Ronald, P.C., B. Albano, R. Tabien, L. Abenes, K. Wu, S. McCouch and S.D. Tanksley	Genetic and physical analysis of the rice bacterial blight disease resistance locus, Xa21.	Mol. Gen. Genet.	236	113-120.	1992	XA21	Xa21*, Xa21, OsXA21
387		Ronald, P.C., T. Holsten, J. Scambray, W. Song, G. Wang and C. Williams	Molecular genetic analysis of the rice bacterial blight resistance.	In Rice Blast Disease. R.S. Zeigler et al. (eds.), C.A.B. International, Wallingford, UK.		187-194.	1994	XA21	Xa21*, Xa21, OsXA21
388		Rutger, J.N. and H.L. Carnahan	A fourth genetic element to facilitate hybrid cereal production. A recessive tall in rice.	Crop Sci.	21(3)	373-376.	1981	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
389		Rutger, J.N., L.E. Azzini and P.J. Brookhouzen	Inheritance of semidwarf and other useful mutant genes in rice.	Rice Genetics. IRRI, Manila, Philippines.		261-271.	1986	EUI1,LGP,YP	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,lgp*, lgp,yp*, gh4
390		Rybka, K., M. Miyamoto, M. Kataoka, I. Ando and S. Kawasaki	Improved high-resolution mapping of rice-blast resistance genes.	Breeding Science	44(Suppl. 2)	190	1994	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
391		Saeda, T. and H. Kitano	Genetic analysis of a short culm mutant showing the dm-type internode distribution pattern.	Japan. J. Breed.	42(Suppl. 2)	214-215.	1992	DM-1*,SSI1	Dm-1*,Ssi1, Ssi1(Dm1)*, Dm1, Ssi1
392		Sahu, R.K. and G.S. Khush	Genetics of resistance to four races of Xanthomonas campestris pv. oryzae in some rice cultivars.	Plant Breeding	102(3)	232-236.	1989	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
393		Sahu, V.N., R. Mishra, B.P. Chaunhary, P.S. Shrivastava and M.N. Shrivastava	Inheritance of resistance to gallmidge in rice.	RGN	7	118-121.	1990	GM3,GM2	gm3*, gm3,Gm2, Gm-2, GM-2
394		Saito, A., M. Yano, N. Kishimoto, M. Nakagahra, A. Yoshimura, K. Saito, S. Kuhara, Y. Ukai, M. Kawase, T. Nagamine, S. Yoshimura, O. Ideta, R. Ohsawa, Y. Hayano, N. Iwata and M. Sugiura	Linkage map of restriction fragment length polymorphism loci in rice.	Japan. J. Breed.	41	665-670.	1991	CHT1,ALD2,LAX1,AMP1,LG,CHL1,ALD1,CHT2,SDH1,CHT3,BHC	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,Ald2*(ald2), Ald2, ald2,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,Amp1(Lap1,LapF), LapF, Lap1, Amp1,lg,chl1, chl1(ch1), ch1,Ald1*, Ald1,Cht2*, Cht2, RC7, OsChia1b, Chia1b,Sdh1, Skd,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
395		Sakaguchi, S.	Linkage studies on the resistance to bacterial leaf blight, Xanthomonas oryzae (Uyeda et Ishiyama) Dowson, in rice.	Bull. Natl. Inst. Agric. Sci., Ser.D	16	1-18.	1967	XA1,XA2	Xa1(Xe), Xe, Xa1, Xa-1,Xa2
396		Salam, M.A., D.J. Mackill and J.C. Glaszmann	Linkage between Pgi-2 and photoperiod sensitivity.	RGN	7	130-132.	1990	PS,PGI2	PS*,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b
397		Sanchez, A.C. and G.S. Khush	Location of chl-7 on linkage group 6.	RGN	8	104-105.	1991	CHL7	chl7
398		Sanchez, A.C. and G.S. Khush	Seven new genes for zebra character in rice.	RGN	9	68-71.	1992	Z9,Z7,Z13,Z10,Z8,Z11,Z12	z9,z7,z13,z10,z8,z11,z12
399		Sanchez, A.C. and G.S. Khush	Chromosomal location of some marker genes in rice using the primary trisomics.	J. Hered.	85	297-300.	1994	GF2,Z8,BC5,Z11,Z12,Z9,PL2,ST7,BC2,RK3,Z7,Z13,SPL9,ST8,WP1,CHL8,Z10,GH2	gf2,z8,bc5, bn, bc-5,z11,z12,z9,pl2(t), pl2,st7,bc2, bc-2,Rk3,z7,z13,spl9,st8,wp1,chl8,z10,gh2, CAD2, CAD, OsCAD2, GH2 
400		Sanchez, A.C., G.S. Khush and D.S. Brar	Linkage relations between Adh-1 and two morphological markers.	RGN	7	110-111.	1990	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
401		Sano, R. and P. Barbier	Analysis of five isoenzyme genes and chromosomal location of Amp-1.	RGN	2	60-62.	1985	S4,AMP3,EST9,PGI2	,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b
402		Sano, Y.	A new gene controlling sterility in F1 hybrids of two cultivated rice species.	J. Hered.	74(6)	435-439.	1983	S4,S3	,
403		Sano, Y.	Differential regulation of waxy gene expression in rice endosperm.	Theor. Appl. Genet.	68	467-473.	1984	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
404		Sano, Y.	Identification of sterility genes introduced from Oryza glaberrima into O.sativa.	Japan. J. Breed.	35(Suppl. 1)	202-203.	1985	S4	
405		Sano, Y.	Gametic eliminator detected in the wild progenitor of Oryza sativa.	RGN	6	93-94.	1989	S6	
406	2341030	Sano, Y.	The genic nature of gamete eliminator in rice.	Genetics	125	183-191.	1990	S10,S1	,
407		Sano, Y.	Genetic analysis of an alien chromosomal segment introduced from Oryza rufipogon into O.sativa.	Japan. J. Breed.	40(Suppl. 2)	306-307.	1990	S6	
408		Sano, Y.	A dominant suppressor for the photoperiod sensitivity gene,Se1 , detected in a photoperiod insensitive cultivar of Indica type.	RGN	7	103-105.	1990	SUSE1,ENSE1	SuSe1(t)*, Su Se1(t)*,En Se1, EnSe1(t), EnSe1
409		Sano, Y.	A gene for low crossability found in the common wild rice.	RGN	8	115-116.	1991	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
410		Sano, Y.	Genetic comparisons of chromosome 6 between wild and cultivated rice.	Japan. J. Breed.	42	561-572.	1992	CIF1,ENSE1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,En Se1, EnSe1(t), EnSe1
411		Sano, Y.	A gamete eliminator reconfirmed in a Japonica-Indica hybrid.	RGN	10	76-77.	1993	S11	S11(t)
412		Sano, Y. and M. Eiguchi	A gene complex responsible for seed shedding and spreading panicle found in wild rice.	Japan. J. Breed.	40(Suppl. 1)	460-461.	1990	SH3,SPR3	Sh3,Spr3(t), Spr3
413		Sano, Y. and M. Eiguchi	A nuclear gene inducing fertility restoration in cytoplasmic male-sterile rice.	RGN	8	113-115.	1991	IFR	Ifr, Rf16, Ifr1
414		Sano, Y., Y.E. Chu and H.I. Oka	Genetic studies of speciation in cultivated rice. I. Genic analysis for the F1 sterility between O. sativa L. and O. glaberrima Steud.	Jpn. J. Genet.	54(2)	121-132.	1979	S2,S1	,
415		Sano, Y., H.Y. Hirano and M. Nishimura	Evolutionary significance of differential regulation at the wx locus of rice.	Rice Genetics. II. IRRI, Manila, Philippines.		11-20.	1991	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
416		Sano, Y., M. Eiguchi and H.Y. Hirano	Gametic eliminations found in the Indica-Japonica hybird of rice.	Japan. J. Breed.	42(Suppl. 2)	454-455.	1992	S10	
417		Sano, Y., M. Eiguchi, H.Y. Hirano and M. Yamada	A nuclear gene modifying instability of fertility restoration in cytoplasmic male sterile rice.	Genet. Res.	60	195-200.	1992	IFR	Ifr, Rf16, Ifr1
418		Sano, Y., R. Sano, M. Eiguchi and H.Y. Hirano	Gamete eliminator adjacent to the wx locus as revealed by pollen analysis in rice.	J. Hered.	85	310-312.	1994	S12,S14,S13,S10	S12(t),S14(t),,
419		Sastry, M.V.S.	Linkage studies in rice. -Interrelationship of genes governing brittle culm and awning.	Oryza Cuttack	14(1)	9-11.	1977	AN3	An3
420		Sastry, M.V.S. and R. Seetharaman	Inheritance in rice.	Indian J. Genet. & Plant Breed.	40(3)	573-577.	1980	BD2,AN2,BD1	bd2,An2,bd1
421		Sastry, M.V.S., P.S. Prakasa Rao and R. Seetharaman	Inheritance of gall midge resistance in rice and linkage relations.	Indian J. Genet. & Plant Breed.	35(1)	156-165.	1975	GM,IBF	gm1, gm2(pd), pd, gm13,IBf
422		Sastry, M.V.S., U.P. Rao, M.B. Kaloda and M. Sain	Inheritance of resistance to gall midge (Orseolia oryzae) in rice.	Indian J. Genet. & Plant Breed.	44(2)	325-328.	1984	GM	gm1, gm2(pd), pd, gm13
423		Sato, S.	Genetic studies on genic male sterility obtained in the procedure of breeding of an isogenic reciprocal translocation of a rice variety, Taichung 65.	Japan. J. Breed.	39(Suppl. 1)	236-237.	1989	MS9	ms9
424		Sato, S.	Action of earliness gene Ef-x derived from native cultivar Kokusyokuto-2 (A58) in Hokkaido, and its linkage analysis by the use of interchange homozygotes.	Japan. J. Breed.	41(Suppl. 1)	332-333.	1991	EFX	Efx(t)*, Efx, Ef5(t)*
425		Sato, S. and S. Tsukasaki	Genetical studies on awnedness gene An4 locating on the twelfth chromosome of rice plant.	Japan. J. Breed.	34(Suppl. 1)	288-289.	1984	AN4	An4
426		Sato, S. and K. Shirakawa	Determination of an earliness gene locus on Nishimura's seventh chromosome of rice, Oryza sativa L.	Japan. J. Breed.	36(Suppl. 1)	354-355.	1986	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
427		Sato, S. and C. Shinjyo	Genetical studies on genic male sterile mutant obtained through breeding of isogenic translocation line of Taichung 65 in rice, Oryza sativa L.	Japan. J. Breed.	41(3)	451-459.	1991	MS9,UR1,CL	ms9,Ur1,Cl
428		Sato, S. and C. Shinjyo	Identification of earliness genes derived from 15 reciprocal translocation homozygotes of rice, Oryza sativa L.	Breeding Science	45	45-49.	1995	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
429		Sato, S., K. Muraoka and Y. Sano	Reconstruction of a linkage group corresponding to the Nishimura's second chromosome in rice, Oryza sativa L.	Japan. J. Breed.	32(3)	232-238.	1982	NL1,GL1	nl1, OsGATA15, GATA15,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3
430		Sato, S., L. Sakamoto and S. Nakasone	Location of Ef-1 for earliness on Nishimura's seventh chromosome.	RGN	2	59-60.	1985	RF1,EF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
431		Sato, S., L. Sakamoto, K. Shirakawa and S. Nakasone	Chromosomal location of earliness gene Ef1 of rice, Oryza sativa L.	Japan. J. Breed.	38(4)	385-396.	1988	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
432		Sato, S., K. Ogata and C. Shinjyo	Thermo-sensitive action of an earliness gene Ef-x in rice. Oryza sativa L.	Jpn. J. Genet.	67	473-482.	1992	EFX,EFY	Efx(t)*, Efx, Ef5(t)*,Efy(t)*, Ef6(t)*, Efy
433		Sato, S., A. Tamaki and C. Shinjyo	Does an earliness gene Ef-1 shorten pleiotropically anther length in rice ? In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	109-119.	1994	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
434		Sato, Y.I.	Genetic control of apiculus hair length.	RGN	2	72-74.	1985	APH	aph
435		Sato, Y.I., S. Matsuura and K. Hayashi	The genetic basis of hybrid chlorosis found in a cross between Japanese native cultivars.	RGN	1	106-107.	1984	HCA2,HCA1	hca2,hca1
436		Sato, Y.I., R. Ishikawa and H. Morishima	Linkage analysis of gene Aph for apiculus hair length.	RGN	4	74-75.	1987	APH	aph
437		Satoh, H.	Genic mutations affecting endosperm properties in rice.	Gamma Field Symposia	24	17-37.	1985	SHR2	shr2, sh2
438		Satoh, H.	Exploitation and identification on endosperm characters.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		54-75.	1990	ESP1,ESP3,ESP2	esp1(rsp1), rsp1, esp1,esp3(rsp3), rsp3, esp3,esp2(rsp2), rsp2, esp2, PDIL1-1
439		Satoh, H.	Genic analysis on the variation of endosperm storage protein found in native varieties in rice.	Reconstruction of rice genetics. K. Takeda, ed. (Report of Grant-in-Aid for Scientific Research).		24-31.	1995	GLU1,GLU2,GLU3,GLU10,GLU4,GLU5,GLU6,GLU7,GLU8,GLU9,PRO2,PRO3,PRO5,PRO4,PRO1,GLUP3	Glu1t*(Glu1), Glu1t*, Glu1t, Glu1, Glu12,Glu2t*(Glu2), Glu2t*, Glu2t, Glu2, Glu13,Glu3t*(Glu3), Glu3t*, Glu3t, Glu3, Glu14,,Glu10t*,Glu4t*(Glu4), Glu4, Glu4t, Glu4t*, Glu15,Glu5t*(Glu5), Glu5, Glu5t, Glu5t*,Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17,Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18,Glu8t*(GluE),Glu9t*,Pro2*, Pro2,Pro3*, Pro3,Pro5*, Pro5,Pro4*, Pro4,Pro1*, Pro1,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
440		Satoh, H. and T. Omura	New endosperm mutations induced by chemical mutagen in rice, Oryza sativa L.	Japan. J. Breed.	31(3)	316-326.	1981	SUG,SHR1,DU1	sug(su), su, sug1, su1, su-1,shr1, sh1, shr,du1
441		Satoh, H. and T. Omura	Mutagenesis in rice by treating fertilized egg cells with nitroso compounds.	Rice Genetics. IRRI, Manila, Philippines.		707-717.	1986	WX1,FLO1,DU1,FLO2,DU3,DU2	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,flo1, flo1-1, o,du1,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 ,du3, OsCBP20, OsCBP20/du3, CBP20,du2
442		Satoh, H. and N. Iwata	Linkage analysis in rice. On three mutant loci for endosperm properties, ge(giant embryo), du-4(dull endosperm-4) and flo-1(floury endosperm-1).	Japan. J. Breed.	40(Suppl. 2)	268-269.	1990	RC,NL2,SPL8,RI,D6,V11,DU4,V10,OPS,FLO1,BGL,RFS,SPL5,G1,NL1,SPL7,D1	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,nl2,spl8(bl8), spl8, bl8,ri,d6(d34), d34, dwf6,v11,du4,v10,ops,flo1, flo1-1, o,bgl, OsRopGEF10, Os RopGEF10, RopGEF10,rfs, cul7, OsRFS,spl5(bl6,spl5-1), bl6, spl5, SF3b3,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,nl1, OsGATA15, GATA15,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
443		Satoh, H., N. Iwata and T. Omura	Gene analysis of some dripping-wet leaf mutants in rice.	Japan. J. Breed.	33(Suppl. 2)	242-243.	1983	DRP6,FC2,DRP2,DRP5,DRP7	drp6,fc2,drp2,drp5,drp7, OsHSD1, LGF1, HSD1
444		Satoh, H., N. Iwata and T. Omura	Linkage analysis in rice. On the loci of new virescent genes, v-9(t) and v-10(t) and v-11(t).	Japan. J. Breed.	34(Suppl. 1)	286-287.	1984	V10,V11,V9	v10,v11,v9
445		Satoh, H., N. Iwata and T. Omura	Linkage analysis in rice. On the loci of dripping-wet leaf genes, drp-5, drp-6, drp-7 and drp-8(t).	Japan. J. Breed.	36(Suppl. 1)	352-353.	1986	DRP8,DRP5,DRP6,FC2,DRP7	drp8,drp5,drp6,fc2,drp7, OsHSD1, LGF1, HSD1
446		Satoh, H., H. Suehisa, M. Ogawa and A. Yoshimura,	Studies on rice glutelin, 3. Genetic analysis of mutants for glutelin acidic subunits in cultivated rice, Oryza sativa L.	Japan. J. Breed.	41(Suppl. 2)	436-437.	1991		
447		Satoh, H., T. Itoh, M.Y. Son and T. Kumamaru	Chromosomal location of a spontaneous mutant gene for 57 kDa polypeptides in rice.	Japan. J. Breed.	43(Suppl. 1)	139	1993	PITA,DRP2,PIZ,GLUP3	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,drp2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
448		Satoh, H., T. Kumamaru, S. Yoshimura and M. Ogawa	New 57 kDa glutelin genes on chromosome 9 in rice.	RGN	11	158-161.	1994	GLUP2,GLUP1	glup2(esp6, gup2), esp6, gup2, glup2,Glup1(Esp5, Gup1), Gup1, Esp5, Glup1
449		Satoh, M., M. Miyamoto, I. Andoh, A. Saito and S. Kawasaki	RFLP mapping of resistance genes against rice blast disease I. Pi-b and Pi-z.	Japan. J. Breed.	42(Suppl. 2)	132-133.	1992	PIZ,PIB	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
450		Satoh, M., M. Miyamoto, I. Ando, A. Saito and S. Kawasaki	RFLF mapping of resistance genes against rice blast disease II. Pi-ta2 and Pi-zt.	Japan. J. Breed.	43(Suppl. 2)	221	1993		
451		Second, G.	Origin of the genic diversity of cultivated rice (Oryza spp. ) study of the polymorphism scored at 40 isozyme loci.	Jpn. J. Genet.	57(1)	25-57.	1982	EST4,EST8,EST6,MDH1,GOT3,GOT2,PGD2,ACP4,EST7,POX4	Est4,Est8,Est6,Mdh1,Got3, Aat3,Got2, Aat2,Pgd2,Acp4,Est7,Pox4
452		Seetharaman, R. and D.P. Srivastava	Inheritance of semi-dwarf stature and cigar shaped panicle in rice.	Indian J. Genet. & Plant Breed.	29	220-226.	1969	SD1,CG	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,cg*, cg
453		Sekiguchi, U., K. Sekizawa, K. Toriyama and Y. Sakurai	Varietal differences of PCBA (Pentachlorobenzyl alcohol)-sensitivity in rice plant.	Bull. Chugoku Agric. Exp. Stn.,  Ser.E	7	1-18.	1972	PCS	pcs
454		Sethi, M. and J.K. Roy	Inheritances of two anatomical characteristics.	RGN	1	108	1984	ESBA,ESBB,FSC	Esba*, Esb1, Esba,Esbb*, Esb2, Esbb,Fsc*(Fc), Fc, Fsc
455	4781370	Setty, M.V.N. and B. Misro	Complementary genic complex for anthocyanin pigmentation in the apiculus of rice (Oryza sativa L.).	Can. J. Genet. Cytol.	15(4)	779-789.	1973	P,A,C	P(Pa,Pb,Pc), A, Pa,A(Sp), Sp, Ap,C, Cp, OsC1, Os-C1, OsMyb6, Myb6
456		Shahjahan, M., T. Imbe, B.S. Jalani, A.H. Zakri and O. Othman	Inheritance of resistance to rice tungro spherical virus in rice (Oryza sativa L.).	Rice Genetics. II. IRRI, Manila, Philippines.		247-254.	1991	TSV1	tsv1(RTSV), RTSV, tsv1
457		Shao, Y. and X-H, Tang	Analysis of restorer genes for photoperiod sensitive male-sterile rice.	RGN	9	52-54.	1992	MS1P,MS2P	ms1P*,ms2P*
458		Shastry, S.V.S., W.H. Freeman, D.V. Seshu, P. Israel and J.K. Roy	Host-plant resistance to rice gall midge.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		353-365.	1972	GM	gm1, gm2(pd), pd, gm13
459		Shenoy, V.V., D.V. Seshu and J.K.S. Sachan	Shikimate dehydrogenase-12 allozyme as a marker for high seed protein content in rice.	Crop Sci.	30(5)	937-940.	1990	SDH1	Sdh1, Skd
460		Shibuya, N.	Studies on causal genes of partial male sterility in rice and their utilizasion in testing cool temperature tolerance.	Bull. Yamagata Univ. Agr. Sci.	6	571-625.	1973	MS2,MS3,MS5,MS6,MS4	ms2 (msd), ms2(t)*, ms65, ms2, msd,ms3(ms1), ms1, ms3,ms5(ms3), ms3, ms5,ms6(ms4), ms6, ms4,ms4(ms2), ms2, ms4
461		Shinbashi, N., T. Kinoshita and M. Takahashi	Gibberellin metabolism by the casual genes for 'Hosetsu-dwarf' and 'Tanginbozu-dwarf' (Preliminary report). - Genetical studies on rice plant. LXIII-.	Mem. Fac. Agr. Hokkaido Univ.	9(2)	201-207.	1975	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
462		Shinbashi, N., T. Kinoshita, M. Takahashi and K. Hasebe	Genetic aspects of two dwarfs Hosetsu-dwarf and Kotake-tamanishiki, and their character expressions.-Genetical studies on rice plant. LXVI-.	Mem. Fac. Agr. Hokkaido Univ.	10(1)	69-75.	1976	D35,D18	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
463		Shinjyo, C.	Cytoplasmic-genetic male sterility in cultivated rice, Oryza sativa L.	Jpn. J. Genet.	44(3)	149-156.	1969	[CMS-BO],RF1	[cms-bo],Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
464		Shinjyo, C.	Genetical studies of cytoplasmic male sterility and fertility restoration in rice, Oryza sativa L.	Sci. Bull. Coll. Agr. Univ. Ryukyus	22	1-57.	1975	PGL,RF1,FGL,[CMS-BO]	pgl,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,[cms-bo]
465		Shinjyo, C.	Identification of male sterile cytoplasms and fertility genes derived from wild species.	Exploitation and identification of rice gene resources. N. Iwata, ed. (Report of Grant-in-Aid for Scientific Research).		106-111.	1990	RF1,[CMS-UR102],[CMS-UR104],[CMS-UR106],[CMS-UR27],[CMS-UR89]	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,[cms-UR102]*, [cms-UR102],[cms-UR104]*, [cms-UR104],[cms-UR106]*, [cms-UR106],[cms-UR27]*, [cms-UR27],[cms-UR89]*, [cms-UR89]
466		Shinjyo, C., R. Nishime and Y. Watanabe	Inheritance of fertility restoring genes Rfx and Rf in male sterile cytoplasm derived from variety Lead Rice (preliminary report).	Japan. J. Breed.	24(Suppl. 1)	130-131.	1974	RF2	Rf2 (Rfx), Rfx, Rf2
467		Shinoda, H., K. Toriyama, T. Yunoki, A. Ezuka and Y. Sakurai	Studies on the varietal resistance of rice to blast. 6. Linkage relationship of blast resistance genes.	Bull. Chugoku Agric. Exp. Stn.,  Ser.A	20	1-25.	1971	PIZ,PIF,PIB,PII,PITA,PIA,PIK,PII2	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi f, PIF, Pif, RMg3, Pi-f,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi i, Pii, Pi-i, Pii(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi i2, Pii2, Pii2(t)
468		Shiraishi, M. and H. Satoh	Identification and gene analysis of amylase isozymes in germinating rice seeds.	Japan. J. Breed.	40(Suppl. 1)	454-455.	1990	BAMY1	betaAmy1, BetaAmy1, Amy10
469		Shiraishi, M., H. Satoh, T. Omura and W. Hara	Amylase isozyme polymorphism in rice varieties.	RGN	3	43-44.	1986	BAMY1	betaAmy1, BetaAmy1, Amy10
470		Shrestha, G.L.	Gene location for Gamadiness in rice (Oryza sativa L. ).	Korean J. Crop. Sci.	29	128-135.	1984	SHP4,SHP3	Shp4(Gb), Gb, Shp4,Shp3(Ga), Ga, Shp3
471		Sidhu,G.S. G.S.Khush	Dominance reversal of a bacterial blight resistance gene in some rice cultivars.	Phytopathology	68(3)	461-463	1978	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
472		Sidhu,G.S. G.S.Khush	Genetic analysis of brown planthopper resistance in twenty varieties of rice, Oryza sativa L.	Theor. Appl. Genet.	53	199-203	1978	BPH4,BPH3,BPH2,BPH1	bph4,Bph3,bph2,Bph1
473		Sidhu, G.S. and G.S. Khush	Linkage relationship of some genes for disease and insect resistance and semidwarf stature in rice.	Euphytica	28(2)	233-237.	1979	GLH3,BPH4	Glh3,bph4
474		Sidhu, G.S., G.S. Khush and T.W. Mew	Genetic analysis of bacterial blight resistance in seventy-four cultivars of rice, Oryza sativa L.	Theor. Appl. Genet.	53	105-111.	1978	XA4,XA8,XA5,XA7	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,xa8,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa7
475		Sidhu, G.S., G.S. Khush and F.G. Medrano	A dominant gene in rice for resistance to whitebacked planthopper and its relationship to plant characteristics.	Euphytica	28	227-232.	1979	WBPH1	Wph1(Wbph), Wbph1, Wph1
476		Singh, A.P., S.C. Prasad and J.B. Tomar	Linkage between genes governing anthocyanin pigmentation.	Indian J. Agr. Sci.	59(9)	575-578.	1989	PJ,PSH,PAU	Pj,Psh,Pau
477		Singh, B.N. and D.J. Mackill	Genetics of leaf rolling under vegetative stage drought stress.	RGN	6	112-115.	1989	LR	lr(t)*, lr
478		Singh, J.P., M.P. Pandey and P.K. Pathak	Inheritance of resistance to whitebacked planthopper, Sogatella furcifera (Horvath) in some rice cultivars.	Euphytica	46(2)	95-100.	1990	WBPH5	Wph5
479		Singh, K., D.S. Multani and G.S. Khush	A new brittle culm mutant in rice.	RGN	11	91-92.	1994	BC6	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88
480		Singh, R.J., G.S. Khush and T.W. Mew	A new gene for resistance to bacterial blight in rice.	Crop Sci.	23(3)	558-560.	1983	XA8,XA4,XA7,XA5,XA3	xa8,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa7,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
481		Siwi, B.H. and G.S. Khush	New genes for resistance to the green leafhopper in rice.	Crop Sci.	17(1)	17-20.	1977	GLH2,GLH4,GLH5,GLH3	Glh2,glh4,Glh5,Glh3
482		Suge, H.	Complementary genes for height inheritance in relation to gibberellin production in rice plants.	Jpn. J. Genet.	50(2)	121-131.	1975	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
483		Suge, H.	The genetic control of gibberellin production in rice.	Jpn. J. Genet.	53(3)	199-207.	1978	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
484		Suge, H.	Survey of endogenous gibberellins in rice lines having different dwarfing genes and in autoteraploid lines.	Japan. J. Breed.	40(1)	21-31.	1990	D18,D35	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
485		Suh, H.S. and M.H. Heu	The segregation mode of plant height in the cross of rice varieties. XI. Linkage analysis of the semi-dwarfness of the rice variety 'Tongil'.	Korean J. Breed.	10(1)	1-6.	1978	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
486		Suh, H.S., J.C. Koh and S.K. Lee	Identification of four genes for genetic male sterility in rice.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	317-320.	1989	MS IR36(T)*,MS M55(T)*,MS M67(T)*(MS18),MS M77(T)*	ms IR36(t)*), msIR36, ms66, MS IR36,ms m55(t)*, MS M55, msm55(t)*, ms67, ms55,ms m67(t)*(ms18), ms68, msm67(t)*, ms18,ms m77(t)*, ms69, msm77(t)*, MS M77, msm77
487		Suh, H.S., J.D. Kim., M.H. Heu and G.S. Chung	Linkage relationships between genetic male sterile and marker genes in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		121-125.	1991	MS M67(T)*(MS18),MS M54(T)*,MS M77(T)*	ms m67(t)*(ms18), ms68, msm67(t)*, ms18,ms m54(t)*,ms m77(t)*, ms69, msm77(t)*, MS M77, msm77
488		Sujadi, S. and  G.S. Khush	Studies on linkage relations of genes controlling disease and insect resistance and nature of endosperm in rice.	Euphytica	26(2)	337-342.	1977		
489		Sun, Z.X., S.K.Min & Z,M,Xiong	A temperature-sensitive male-sterile line found in rice.	RGN	6	116-117	1989	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
490		Sur, S.C. and G.S. Khush	Chromosomal location of Xa-4 gene.	RGN	1	98-99	1984	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
491		Suzuki, Y., T. Nagamine, A. Kobayashi and K. Ohtsubo	Detection of a new rice variety lacking lipoxygenase-3 by monoclonal antibodies.	Japan. J. Breed.	43	405-409.	1993	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
492		Suzuki, Y., T. Nagamine and K. Okuno	Genetic analysis of lipoxygenase-3 content in rice embryos by monoclonal antibodies.(in Japanese)	Japan. J. Breed.	43(Suppl. 2)	142	1993	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
493		Syakudo, K. and T. Kawase	Studies on the quantitative inheritance (11). A. Rice (Oryza sativa L.) (d) Inheritance of the heading duration and the quantitative function of the causal genes in its determination. (1) On the quantitative function of he genes E1, E2 and D1.	Japan. J. Breed.	3(2)	6-12.	1953	E2,E1	,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
494		Syakudo, K., T. Kawase and K. Yoshino	Studies on the quantitaive inheritance (13). A. Rice (Oryza sativa L.) (b) Inheritance of the heading period and the quantitative function of the causual genes in its determination. (2) On the quantitative function of the genes E3, E4 and E5.	Japan. J. Breed.	4(2)	83-90	1954	E3	
495		Takahashi, M.	Genetical studies on rice plant. XXII. Genes for localization of anthocyanin pigment in stigma.	Japan. J. Breed.	8(3)	142-148.	1958	PS1	Ps1
496		Takahashi, M.	Gene analysis and its related problems. -Genetical studies on rice plant, LXXX-.	J. Fac. Agr. Hokkaido Univ.	61(1)	91-142.	1982	PL	Pl, Pl1
497		Takahashi, M. and W. Tate	Compact-paniculous sterile	Japan. J. Breed.	1(2)	119-124.	1951	CPS	cps
499		Takahashi, M., T. Kinoshita and K. Takeda	Character expression and causal genes of some mutants in rice plant. (Genetical studies on rice plant, XXXIII).	J. Fac. Agr. Hokkaido Univ.	55(4)	496-512.	1968	BL5,BL6,D13,MLS1,MLS2,YSL,CLW,FS2,BL4,BC2,ER,BL3,LA,D12	bl5,bl6,d13, dwf12,mls1,mls2,ysl,clw,fs2,bl4,bc2, bc-2,er(o), o, er,bl3,la,d12(d50), dwf11, d50, d12, d32, F71, DMT9
500		Takahashi, M., T. Mori, T. Kinoshita and K. Mori	Genic constitution on red coloration in rice grains of an Indian variety, Surjamkhi. (Genetical studies of rice plant, L.).	Res. Bull. Univ. Farm Hokkaido Univ.	18	47-53.	1972	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
501		Takahashi, N.	Physicogenetical studies on germination of rice seeds with special reference to the genetical factors governing germination.	Bull. Inst. Agr. Res., Tohoku Univ.	14(1)	1-87.	1962	SDRA,SDRB,SG	Sdra (Sd), Sdra, Sdua, Sdr6,Sdrb, Sdub, Sdr7,Sg
506		Takamure, I.	Genetic studies on several mutants related to morphological and physiological characters in rice.	Mem. Fac. Agr. Hokkaido Univ.	19(2)	151-202.	1994	LHS1,RCN3,RCN4,LKF,MI,LKI1,RCN2,MLS3,RCN1,D58	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,rcn3,rcn4,Lk f, Lkf,Mii, Mi1,lk i1, lki1, lk-i-1,rcn2,mls3,rcn1,d58, dwf39
507		Takamure, I. and T. Kinoshita	Genetical relation between Lk-f and Mi genes concerning with grain size. -Genetical studies on rice plant, LXXXVII-.	Mem. Fac. Agr. Hokkaido Univ.	14(1)	1-10.	1983	LKF,MI	Lk f, Lkf,Mii, Mi1
508		Takamure, I. and T. Kinoshita	Inheritance and expression of reduced culm number character in rice. Genetical studies on rice plant, LXXXIX.	Japan. J. Breed.	35(1)	17-24.	1985	RCN1	rcn1
509		Takamure, I. and T. Kinoshita	A temperature-sensitive dwarf mutants showing a haploid-like feature in rice.	RGN	3	99-100.	1986	D58	d58, dwf39
510		Takamure, I. and T. Kinoshita	Linkage analysis of the long grain gene   (Lk-i) derived from rice variety 'IRAT 13'.	Japan. J. Breed.	39(Suppl. 2)	316-317.	1989	LKI1	lk i1, lki1, lk-i-1
511		Takamure, I. and T. Kinoshita	Gene mapping of Fusayoshi long grain    (Lk-f) located on the XI + XII linkage group in rice.	Japan. J. Breed.	40(Suppl. 1)	462-463.	1990	LKF	Lk f, Lkf
512		Takamure, I. and T. Kinoshita	Linkage analysis in chromosomes 3 and 6.	RGN	8	98-100.	1991	D20,AN3,LKF,MI,D58	d20, dwf17,An3,Lk f, Lkf,Mii, Mi1,d58, dwf39
513		Takamure, I. and T. Kinoshita	Modification of glume characters due to genic interactions and environmental conditions.	RGN	9	85-88.	1992	G1,G2,MLS3	g1 (lng), lng, g1, ELE, OsG1, G1/ELE,G2(Gm, Gl), Gl, Gm,mls3
514		Takamure, I. and T. Kinoshita	Inheritance of six kinds of mutants induced by gamma-ray irradiation to anther culture of rice.	Mem. Fac. Agr. Hokkaido Univ.	18(4)	437-446.	1993	MIK	mi k, mik, mi2
515		Takamure, I. and T. Kinoshita	Genic analysis of reduced culm number mutants induced by gamma-ray irradiation in rice.	Mem. Fac. Agr. Hokkaido Univ.	18(4)	447-454.	1993	RCN4,RCN6,RCN2,RCN5	rcn4,rcn6,rcn2,rcn5
516		Takamure, I. and T. Kinoshita	Genic analysis for a small grain mutant induced from cultivar Kitaake.	RGN	11	89-91.	1994	MIK	mi k, mik, mi2
517		Takamure, I. and T. Kinoshita	Determination of loci for two reduced culm number mutants and a malformed spikelet in rice.	Breeding Science	44(Suppl. 1)	214	1994	LKI1,RCN2,MLS3,RCN1,HLA,D58	lk i1, lki1, lk-i-1,rcn2,mls3,rcn1,Hla, Hl1,d58, dwf39
518		Takamure, I., K. Kato and T. Kinoshita	Character expression and gene identification of three mutants responsible for reduced culm number type.	Mem. Fac. Agr. Hokkaido Univ.	16(3)	287-294.	1989	RCN3,RCN2	rcn3,rcn2
519		Takamure, I., T. Yamamoto and T. Kinoshita	Determination of loci for Mi (Minute gain) and Lk-f (Fusayoshi long grain) on the 3rd linkage group in rice.	Japan. J. Breed.	41(Suppl. 1)	322-323.	1991	D20,MI,AN3	d20, dwf17,Mii, Mi1,An3
520		Takamure, I., T. Yamamoto, S. Niikura and T. Kinoshita	Inheritance and expression of a leafy head mutant in rice.	Breeding Science	45(Suppl. 1)	99	1995	LKF,MI,LK2,LK1	Lk f, Lkf,Mii, Mi1,Lk2(t) (Lknb), Lknb, Lk2,lk1(t), lkna, lk1
521		Takeda, K.	Open hull male sterile mutant in rice.	RGN	4	78-79.	1987	OMS	oms
522		Takeda, K.	Inheritance of grain size and its implications for rice breeding.	Rice Genetics. II. IRRI, Manila, Philippines.		181-189.	1991	LKF,MI	Lk f, Lkf,Mii, Mi1
523		Takeda, K. and K. Saito	The inheritance and character expression of the minute gene derived from a rice genetic tester Minute.	Bull. Fac. Agr. Hirosaki Univ.	27	1-29.	1977	MI	Mii, Mi1
524		Takeda, K. and K. Saito	Major genes responsible for grain shape in rice.	Japan. J. Breed.	30(3)	280-282.	1980	LKF,MI	Lk f, Lkf,Mii, Mi1
525		Takeda, K. and T. Kato	Duplicate genes controlling long grain of a rice variety IRAT13.	RGN	9	59-60.	1992	LKI2,LKI1	lki2,lk i1, lki1, lk-i-1
526		Takita, T.	Gene analysis for resistance to green rice leafhoppers.	RGN	7	117-118.	1990	GRH2,GRH1	Grh2,Grh1
527		Tamaru, N.	Breeding studies on genetic male sterility and hybird sterility in rice (Oryza sativa L.).	Mem. Fac. Agr. Hokkaido Univ.	19(2)	203-256.	1994	MS18,MS19,MS20,MS21,MS22,MS23,MS24,MS25,MS26,MS27,MS28,MS30,MS31,MS32,MS33,MS34,MS36,MS37,MS38,MS39,MS40,MS41,MS42,MS43,MS44,MS45,MS35	ms18(t)*, ms18(t), ms18,ms19(t)*, ms19(t), ms19,ms20(t)*, ms20(t), ms20,ms21(t)*, ms21(t), ms21,ms22(t)*, ms22(t), ms22,ms23(t)*, ms23(t), ms23,ms24(t)* (=ms29), ms24(t), ms24,ms25(t)*, ms25(t), ms25,ms26(t)*, ms26(t), ms26,ms27(t)*, ms27(t), ms27,ms28(t)*, ms28(t), ms28,ms30(t)*, ms30,ms31(t)*, ms31,ms32(t)*, ms32,ms33(t)*, ms33,ms34(t)*, ms34,ms36(t)*, ms36,ms37(t)*, ms37,ms38(t)*, ms38,ms39(t)*, ms39,ms40(t)*, ms40,ms41(t)*, ms41,ms42(t)*, ms42,ms43(t)*, ms43,ms44(t)*, ms44,ms45(t)*, ms45,ms35(t)*, ms35
528		Tamura, K., I. Ohshima, K. Okada, Y. Morooka, N. Nomura, H. Namai, H. Kato, R. Ikeda and F. Kikuchi	Linkage analysis of a photoperiod-sensitive gene Se-1 locus with neighbouring loci in rice.	Breeding Science	44(Suppl. 1)	213	1994	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
529		Tamura, K., M. Yano, T. Sasaki, K. Nomura, H. Namai and F. Kikuchi	Linkage analysis using RFLP for a photoperiod-sensitive gene Se-1 locus with neighboring loci in rice.	Breeding Science	45(Suppl. 1)	82	1995	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
530		Tanaka, H., A. Nakamura, S. Oba and F. Kikuchi	Genetic analysis for semidwarfism of induced mutant in rice (Oryza sativa L).	Japan. J. Breed.	42(Suppl. 1)	576-577.	1992	SD9	sd9(t), sd9, sd(t)*
531		Tang, S.X., G.S. Khush and B.O. Juliano	Genetics of gel consistency in rice (Oryza sativa L. ).	J. Genet.	70(2)	69-78.	1991	GLC	glc
532		Tanisaka, T., M. Tomita and H. Yamagata	Gene analysis for the semidwarfism of two mutant strains, Hokuriku 100 and Kanto 79, induced from a rice variety Koshihikari. -Studies on the utility of artificial mutations in plant breeding XVIII.	Japan. J. Breed.	40	103-117.	1990	D60,GAL	d60 (sd(t)), sd(t), dwf41, d60,gal(lt), It-m, lt, gal
533		Tanisaka, T., N. Takemori, T. Yabu, H. Egashira, Y. Okumoto and H. Yamagata	Two useful semidwarf genes in a short-culm mutant line HS90 of rice.	Breeding Science	44	397-403.	1994	SD1,SD9	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,sd9(t), sd9, sd(t)*
534		Tanksley, S., M. Causse, T. Fulton, N. Ahn, Z. Wang, K. Wu, J. Xiao, Z. Yu, G. Second and S. McCouch	A high density molecular map of the rice genome.	RGN	9	111-115.	1992		
535		Tanksley, S.D., T.M. Fulton and S.R. McCouch	Linkage map of rice    (Oryza sativa) (2N=24).	Genetic Maps, Locus Maps of Complex Genomes, Plants. S.J. O'Brien ed. Cold Spring Harbour Lab. Press.	Book 6	61-79.	1993	SALT,PI6,SK2(T)(SCL, FGR),PR,XA21,ATP,RC,EST7,XA5,WBPH1,R45S1,PGD1,LEC,ACP4,CYC1,R5S1,MAL1,PI30,PI11,LRT2,ACT1,WX1,LAX1,BHC	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,Pi6(t)*, Pi6, Pi-6(t), pi6(t),sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Pr(Rp), Rp, Pr,Xa21*, Xa21, OsXA21,ATP*(atp1), ATPX, atp1,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Est7,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Wph1(Wbph), Wbph1, Wph1,R45s1*(rDNA1), rDNA1, r45s, R45s1,Pgd1, 6Pgd1,Lec*, Lec,Acp4,cyc1*, cyc1,R5s1*, r5s, R5s1,Mal1, Mal I, Mal-I, Mal-1,Pi-30(t), Pi30(t),Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,act1, AC1, RAC1, RAc1, ACT11, OsACT1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
536		Taura, S., T. Ogawa, R.E. Tabien, G.S. Khush, A. Yoshimura and T. Omura	The specific reaction of Taichung Native 1 to Philippine race of bacterial blight and inheritance of resistance to race 5 (PX0112).	RGN	4	101-102.	1987	XA14	Xa14
537		Taura, S., A. Yoshimura, T. Ogawa, R. Ikeda and T. Omura	Studies on mutation breeding for resistance to bacterial blight in rice. I. Induction of resistant mutants and its genetic analysis.	Japan. J. Breed.	39(Suppl. 1)	362-363.	1989	XA20,XA14,XA19	xa20,Xa14,xa19
538		Taura, S., T. Ogawa, A. Yoshimura, R. Ikeda and T. Omura	Identification of a recessive resistance gene in induced mutant line XM5 of rice to rice bacterial blight.	Japan. J. Breed.	41(3)	427-432.	1991	XA19	xa19
539		Taura, S., T. Ogawa, A. Yoshimura, R. Ikeda and N. Iwata	Identification of a recessive resistance gene to rice bacterial blight of mutant line XM6, Oryza sativa L.	Japan. J. Breed.	42	7-13.	1992	XA20	xa20
540		Teng, L.S. and Z.T. Shen	Inheritance of fertility restoration for cytoplasmic male sterility in rice.	RGN	11	95-97.	1994	RF3,RF4	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4
541		Teraishi, M., T. Komori, Y. Okumoto, T. Nakazaki, H. Yamagata and T. Tanisaka	Studies on the utilization of a mutator induced in rice. 8. RFLP mapping of mutable slender-glume.	Breeding Science	44(Suppl. 1)	231	1994	SLG	slg, Rurm1, Urm1
542		Thakur, R.	Linkage relationship of long palea in rice.	RGN	1	110	1984	RL6	rl6(t), cul13
543		Thakur, R. and R.P. Roy	Linkage studies in Indica rice, Oryza sativa L.	Euphytica	24(2)	511-516.	1975	LP2,UNA,LP1,UNB	lp2,Una, Un1,lp1,Unb, Un2
544		Thakur, R. and D.H.R. Lambers	Inheritance of plant elongation ability at seedling stage in rice.	Euphytica	41(3)	227-233.	1989	EL	El*, El
545		Tomar, J.B. and Shiksha, D. Tomar	Genetic analysis of resistance to green leafhopper in rice.	Plant Breeding	98(1)	47-52.	1987	GLH6	Glh6
546		Tomita, M. and H. Yamagata	Pollen sterility induced by a gamete-killing gene.	Japan. J. Breed.	37(Suppl. 1)	178-179.	1987		
547		Tomita, M., T. Tanisaka and H. Yamagata	Genetical analysis for semi-dwarfness of rice. 5. Early-heading gene and gametic lethal gene to semi-dwarfness in Kanto 79.	Japan. J. Breed.	36(Suppl. 2)	258-259.	1986		
548		Tomita, M., T. Tanisaka, K. Okumoto and H. Yamagata	Linkage analysis for gametic lethal gene of a rice variety Koshihikari and the semidwarf gene induced in Koshihikari.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	345-348.	1989	D60,GAL	d60 (sd(t)), sd(t), dwf41, d60,gal(lt), It-m, lt, gal
549		Toriyama, K.	Genetics of and breeding for resistance to rice virus diseases.	In The Virus Diseases of the Rice Plant. Proceed. Symp IRRI 1967, John Hopkins Press		313-334.	1969	TUVA,TUVB,HBV	Tuva, Tuv3,Tuvb, Tuv4,Hbv
550		Toriyama, K.	Breeding for resistance to major rice disease in Japan.	Symposium on Rice Breeding, IRRI, Los Banos, Philippines.		253-281.	1972	PIF	Pi f, PIF, Pif, RMg3, Pi-f
551		Tripathi, R.S. and M.J.B.K. Rao	Inheritance and linkage relationship of scent in rice.	Euphytica	28	319-323.	1979	SK1	Sk1, Fgr
552		Tripathi, R.S. and M.J. Balakrishna Rao	Inheritance studies of characters associated with floating habit and their linkage relationship in rice.	Euphytica	34	875-881.	1985	ND,NR1,NR2	Nd*, Nd,Nr1*, Nr1,Nr2*, Nr2
553		Tsai, K.H.	Studies on earliness genes in rice, with spacial reference to analysis of isoalleles at the Ef locus.	Jpn. J. Genet.	51(2)	115-128.	1976	EF1,E1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
554		Tsai, K.H.	Unusual segregation patterns found at the m-Ef locus.	RGN	1	115-116.	1984	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
555		Tsai, K.H.	Further observations on the Ef-1 gene for early heading.	RGN	2	77-78.	1985		
556		Tsai, K.H.	Genes controlling heading time found in a tropical Japonica variety.	RGN	3	71-72.	1986	EF1,EF4,EF2,EF3	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,ef4, ef4(t),ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef3(t), ef3
557		Tsai, K.H.	An induced dwarfing gene, sd-7(t), obtained in Taichung 65.	RGN	6	99-101.	1989	SD7	sd7, sd7(t)
558		Tsai, K.H.	Unusual mode of inheritance of heading time and occurrence of weak plants observed in rice.	Japan. J. Breed.	40(2)	133-146.	1990	EF2,EF3	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef3(t), ef3
559		Tsai, K.H.	Tight linkage of gene sd-7(t) and d1 found in a cross of Taichung 65 isogenic lines.	RGN	8	104	1991	SD7	sd7, sd7(t)
560		Tsai, K.H.	Chromosomal location of gene sd-1 examined with isogenic translocation lines of Taichung 65.	RGN	8	109-110.	1991	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
561		Tsai, K.H.	Multiple alleles detected at locus sd-1.	RGN	8	112-113.	1991	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
562		Tsai, K.H.	Genes for late heading and their interaction in the background of Taiching 65.	Rice Genetics. II. IRRI, Manila, Philippines.		211-215.	1991	EF2,EF4,EF3	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef4, ef4(t),ef3(t), ef3
563		Tsai, K.H.	Detection of a new semi-dwarfing gene, sd-8(t).	RGN	11	80-83.	1994	SD8	sd8(t), sd8
564		Tsai, K.H.	Lateness lines with ef-1 alleles produced from a cross between two early rice varieties having Ef-1 alleles.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	I.	101-108.	1994	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
565		Tsai, K.H.	Genetic analysis for heading time in wild rice strains.	Jpn. J. Genet.	70	555-562.	1995	SE6,SE7,EF1	se6(t),se7(t),Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
566		Tsai, K.H. and H.I. Oka	Genetic studies of yielding capacity and adaptability in crop plants. 2. Analysis of genes controling heading time in Taichung 65 and other rice varieties.	Bot. Bull. Acad. Sin.	72(2)	54-70.	1966	EF1,SE12	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se12
567		Tsunematsu, H., H. Hasegawa, S. Yoshimura, A. Yoshimura and N. Iwata	Rice RFLP/RAPD linkage map by using RI (recombinant inbred) lines.  In Toward enhanced and sustainable agricultural productivity in 2000's: Breeding research and biotechnology. 	Proc. 7th Intern. Congress SABRAO & Intern Symp. WSAA, Taichung District Agricultural Improvement Station, Taiwan, R.O.C.	II.	475-478.	1994		
568		Tsuzuki, E. and E. Shimokawa	Inheritance of aroma in rice.	Euphytica	46(2)	157-159.	1990	SK1	Sk1, Fgr
569		Uemura, Y.J., H. Satoh, M. Ogawa and A. Yoshimura	Mapping of genes for glutelin basic subunit polypeptides in cultivated rice.	Breeding Science	44(Suppl. 2)	175	1994	GLU5,GLU6,GLU7,GLU8	Glu5t*(Glu5), Glu5, Glu5t, Glu5t*,Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17,Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18,Glu8t*(GluE)
570		Van Deynze, A.E., J. Dubcovsky, K.S. Gill, J.C. Nelson, M.E. Sorrells, J. Dvorak, B.S. Gill, E.S. Lagudah, S.R. McCouch and R. Appels	Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat.	Genome	38	45-59.	1995		
571		Virmani, S.S., K. Govinda Raj, C. Casal, R.D. Dalmacio and P.A. Aurin	Current knowledge of and outlook on cytoplamic-genetic male sterility and fertility restoration in rice.	Rice Genetics. IRRI, Manila, Philippines.		633-647.	1986		
572		Wan, J. and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L). VI.	Breeding Science	45(Suppl 1)	103	1995	S7	S7
573		Wan, J., S. Yanagihara, H. Kato and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.). III. S-9(t).	Japan. J. Breed.	43(Suppl. 1)	146	1993	EST1,S9	Est1,
574		Wan, J., S. Yanagihara, H. Kato and H. Ikehashi	Multiple alleles at a new locus causing hybrid sterility between a Korean Indica variety and Javanica variety in rice (Oryza sativa L.).	Japan. J. Breed.	43	507-516.	1993	S5,S8,EST2,S7	S5-3, S5-4,,Est2, Est_2,S7
575		Wan, J., S. Yamaguchi, H. Kato and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.) IV. S-10(t).	Breeding Science	44(Suppl. 1)	216	1994	S15	S15(S10), S10
576		Wan, J., H. Kato and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.).V. S-16(t).	Breeding Science	44(Suppl. 2)	184	1994	S16	
577	7912216	Wang, G.L., D.J. Mackill, J.M. Bonman, S.R. McCouch, M.C. Champoux and R.J. Nelson	RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistance rice cultivar.	Genetics	136	1421-1434.	1994	PI5,PI7,PIZ,PI11	Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi7, Pi-7(t), Pi7(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11
578		Wang, X., M. Wang, G. Mei, H. Wu, W. Duan and W. Wang	Photoperiod-conditioned male sterilty and its inheritance in rice.	Rice Genetics. II. IRRI, Manila, Philippines.		217-226.	1991	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
579		Washio, O., K. Toriyama, A. Ezuka and Y. Sakurai	Studies on the breeding of rice varieties resistant to stripe disease II. Genetic study on resistance to stripe disease in Japanese upland rice.	Japan. J. Breed.	18(2)	96-101.	1968	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
580		Washio, O., K. Toriyama and A. Ezuka	Studies on the breeding of rice varieties resistant to stripe disease III. Genetic study on resistance to stripe disease in foreign varieties.	Japan. J. Breed.	18(3)	167-172.	1968	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
581		Washio, O., A. Ezuka, K. Toriyama and Y. Sakurai	Testing method for genetics of and breeding for resistance to rice stripe disease.	Bull. Chugoku Agric. Exp. Stn.,  Ser.A	16	39-197.	1968	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
582		Watanabe, Y.	Establishment of cytoplasmic and genetic male-sterile lines by means of Indica-Japonica cross.	Oryza Cuttack	8(2) Suppl.	9-16.	1971	[CMS-ID],RF2	[cms-ld],Rf2 (Rfx), Rfx, Rf2
583		Wu, C.F. and G.S. Khush	A new dominant gene for resistance to whitebacked planthopper in rice.	Crop Sci.	25(3)	505-509.	1984	WBPH5	Wph5
584	3408480	Wu, K.S., J.C. Glaszmann and G.S. Khush	Chromosomal locations of ten isozyme in rice (Oryza sativa L.) through trisomic analysis.	Biochem. Genet.	26	303-320.	1988	EST5,GOT1,ICD1,AMP1,CAT1,POX5,AMP4,AMP2,PGD1,POX2,ACP2,ACP1	Est5,Got1, Aat1, OsAAT, GOT-A,Icd1,Amp1(Lap1,LapF), LapF, Lap1, Amp1,Cat1, Cat_1,Pox5,Amp4,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Pgd1, 6Pgd1,Pox2,Acp2,Acp1
585		Xiao, J., T. Fulton, S. McCouch, S. Tanksley, N. Kishimoto, R. Ohsawa, Y. Ukai and A. Saito	Progress in integration of the molecular maps of rice.	RGN	9	124-128.	1992		
586		Yabu, T., N. Takemori and T. Tanisaka	Genetical analysis for semidwarfism of rice. 16. Gene analysis for semidwarfism of a variety Fujisaka 5.	Breeding Science	44(Suppl. 1)	215	1994	SD9	sd9(t), sd9, sd(t)*
587		Yabuno, T.	Genetic studies on the interspecific cytoplasm substitution lines of japonica varieties of Oryza sativa L.and O. glaberrima Steud.	Euphytica	26	451-463.	1977	[CMS-AK]([CMS-JP]),RF AK(RFJ)	[cms-ak]([cms-jp]), [cms-jp], [cms-ak],Rf ak(Rfj), Rf7, Rfak, Rfj
588		Yamada, T.	Multiple alleles at the Xa-1 and Xa-kg loci for resistance to bacterial leaf blight.	RGN	1	97-98.	1984	XA12	Xa12(Xa kg), Xakg, Xa12
589		Yamada, T. and O. Horino	Studies on genetics and breeding of resistance to bacterial leaf blight in rice. V. The multiple alleles resistant to the bacterial groups I and V of X. campestris pv. oryzae of Japan in the varieties IR28, IR29 and IR30.	Japan. J. Breed.	31(4)	423-431.	1981	XA1,XA12	Xa1(Xe), Xe, Xa1, Xa-1,Xa12(Xa kg), Xakg, Xa12
590		Yamamoto, T. and T. Ogawa	Personal communication.	(Refer to RGN 6: 4)			1989	XA18	Xa18
591		Yanagihara, S., H. Kato and H. Ikehahi	A new locus for multiple alleles causing hybrid sterility between an Aus variety and Javanica varieties in rice (Oryza sativa L.).	Japan. J. Breed.	42	793-801.	1992	S7	S7
592		Yanagihara, S., J. Wan, H. Kato and H. Ikehasi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.) II.	Japan. J. Breed.	42(Suppl. 2)	216-217.	1992	S8,S7	,S7
593		Yanagihara, S., S.R. McCouch, K. Ishikawa, Y. Ogi, K. Maruyama and H. Ikehashi	Molecular analysis of the inheritance of the S-5 locus, conferring wide compatibility in Indica/Japonica hybrids of rice (O.sativa L.).	Theor. Appl. Genet.	90	182-188.	1995	EST2,S5,PGI2,SE1,ALK	Est2, Est_2,S5-3, S5-4,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
594		Yang, R.C., K. Liang, N. Wang and S. Chen	A recessive gene in Indica rice 5460S for thermosensitive genic male sterility.	RGN	9	56-57.	1992	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
595		Yano, M. and T. Omura	New genes for shruken endosperm mutants of rice.	Japan. J. Breed.	33(Suppl. 1)	122-123.	1983		
596		Yano, M., H. Satoh and T. Omura	Gene analysis on the endosperm mutants induced by MNU treatment in rice.	Japan. J. Breed.	30(Suppl. 1)	260-261.	1980		
597		Yano, M., Y. Isono, H. Satoh and T. Omura	Gene analysis of sugary and shrunken mutants of rice, Oryza sativa L.	Japan. J. Breed.	34(1)	43-49.	1984	SUG,SHR1	sug(su), su, sug1, su1, su-1,shr1, sh1, shr
598		Yano, M., K. Okuno, J. Kawakami, H. Satoh and T. Omura	High amylose mutants of rice, Oryza sativa L.	Theor. Appl. Genet.	69	253-257.	1985	AE1	ae1
599		Yano, M., K. Okuno, H. Satoh and T. Omura	Chromosomal location of genes conditioning low amylose content of endosperm starches in rice, Oryza sativa L.	Theor. Appl. Genet.	76	183-189.	1988	DU5,DU4,DU1	du5,du4,du1
600		Yano, M., A. Saito, A. Yoshimura, S. Kuhara, S. Yoshimura, O. Ikeda, N. Kishimoto, K. Saito, R. Ohsawa, K. Kawase, T. Nagamine, T. Ogawa, M. Nakagahra and N. Iwata	Chromosome identification of rice RFLP linkage groups.	Japan. J. Breed.	40(Suppl. 1)	468-469.	1990	LAX1,EST3,FGL,NL1	lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,Est3,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,nl1, OsGATA15, GATA15
601		Yano, M., E. Simosaka, A. Saito and M. Nakagahra	Linkage analysis on gene for scent in indica rice variety, Surjamkhi, using a restriction fragment length polymorphism markers.	Japan. J. Breed.	41(Suppl. 1)	338-339.	1991	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
602		Yano, M., R. Zamorski, A. Saito and N. Shibuya	Linkage analysis of the gene controlling glucomannan content in endosperm cell wall of rice.	Japan. J. Breed.	41(Suppl. 2)	498-499.	1991	MAN	Man
603		Yano, M., R. Zamorski, A. Saito and N. Shibuya	A dominant gene controlling accumulation of glucomannan in the cell wall of rice endosperm.	RGN	10	107-108.	1993	MAN	Man
604		Yasui, H., S. Saiki and N. Iwata	A desynaptic gene ds3(t) located on chromosome 7 in rice.	RGN	10	80-83.	1993	DS3	ds3(t), ds3
605		Yen, S.T. and S.C. Hsieh	The inheritance of coloration and some other characters of induced dwarf-mutant. Genic analysis in rice, X.	J. Taiwan Agr. Res.	17(2)	1-8.	1968	D57	d57[d(x)], dwf38, d(x), d57
606		Yen, S.T., M.M. Lin and S.C. Hsieh	Linkage relations of another induced dwarfness gene d31. Genic analysis in rice, IX.	Bot. Bull. Acad. Sin.	9(1)	69-74.	1968	D31,NAL4	d31, dwf27,nal4(nal), nal4, nal, cul4
607		Yokoo, M.	Female sterility in a Indica-Japonica cross of rice.	Japan. J. Breed.	34(2)	219-227.	1984	FES1,FES2	fes1,fes2
608		Yokoo, M. and F. Kikuchi	Multiple allelism of locus controlling heading time of rice detected using the close linkage with blast-resistance.	Japan. J. Breed.	27(2)	123-130.	1977	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
609		Yokoo, M. and F. Kikuchi	Genetic analysis for heading time in rice by the aid of the linkage with blast resistance.	Japan. J. Breed.	28(1)	49-55.	1978	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
610		Yokoo, M. and F. Kikuchi	Monogenic control of basic vegetative phase and photoperiod-sensitive phase in rice.	Japan. J. Breed.	32(1)	1-8.	1982	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
611		Yokoo, M. and K. Okuno	Genetic analysis of earliness mutations induced in the rice cultivar Norin 8.	Japan. J. Breed.	43	1-11.	1993	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
612		Yoshimura, A., N. Iwata and T. Omura	Linkage analysis by reciprocal translocation method in rice plants (Oryza sativa L.). III. Marker genes located on chromosomes 2, 3, 4 and 7.	Japan. J. Breed.	32(4)	323-332.	1982	LAX1,FGL,SPL6,D18,RI,D1,RK2,PGL,RL3,SPL1,NAL3,D10,NL1	lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,spl6,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,ri,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,rk2,pgl,rl3(rl1), rl1, rl3, cul10,Spl1, spl1(sl,bl2), sl, bl2, spl1,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,nl1, OsGATA15, GATA15
613		Yoshimura, A., T.W. Mew, G.S. Khush and T. Omura	Trisomic analysis of a recessive gene xa-5 for resistance to bacterical blight of rice.	Japan. J. Breed.	33(Suppl. 1)	264-265.	1983	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
614		Yoshimura, A., T.W. Mew, G.S. Khush and T. Omura	Inheritances of resistance to bacterial blight in rice cultivar, Cas 209.	Phytopathology	73(10)	1409-1412.	1983	XA10	Xa10, Xa-10
615		Yoshimura, A., O. Ideta, T. Matsumoto, T. Tsunematsu and N. Iwata	Integration of conventional and RFLP linkage maps in rice. 1. On chromosomes 1, 2, 3 and 4.	Japan. J. Breed.	42(Suppl. 1)	168-169.	1992	D18,FS2,RL4,SPL6,V6,BL1,TRI,SPL3,CHL1,LG,D11,FC1,EG1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,fs2,rl4(rl2), rl2, rl4, cul11,spl6,v6,bl1,tri,spl3(bl4), spl3, bl4,chl1, chl1(ch1), ch1,lg,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,eg1, GY1
616		Yoshimura, A., O. Ideta, S. Takebayashi, T. Matsumoto, S. Yoshimura, T. Ogawa and N. Iwata	Integration of RFLP and conventional maps in rice. II. The location of gl-1 and xa-5.	Japan. J. Breed.	42(Suppl. 2)	124-125.	1992	XA5,NL1,GL1	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,nl1, OsGATA15, GATA15,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3
617		Yoshimura, S., R. Nelson, A. Yoshimura, T.W. Mew and N. Iwata	RFLP mapping of the bacterical blight resistance genes Xa-3 and Xa-4.	RGN	9	136-138.	1992	XA4,XA3	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
618		Yoshimura, S., A. Yoshimura and N. Iwata	Tagging Xa-1, the bacterial blight resistance gene in rice, by using RAPD markers.	Japan. J. Breed.	42(Suppl. 2)	204-205.	1992	XA4,XA1	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa1(Xe), Xe, Xa1, Xa-1
619		Yoshimura, S., A. Yoshimura, A. Saito, N. Kishimoto, M. Kawase, M. Yano, M. Nakagahra, T. Ogawa and N. Iwata	RFLP analysis of introgressed chromosomal segments in three near-isogenic lines of rice for bacterial blight resistance genes, Xa-1, Xa-3 and Xa-4.	Jpn. J. Genet.	67	29-37.	1992	XA3,XA1,XA4	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa1(Xe), Xe, Xa1, Xa-1,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
620		Yoshimura, S., A. Yoshimura, R.J. Nelson, S.R. McCouch, T.W. Mew and N. Iwata	Mapping and combining of bacterial blight resistance genes in rice using molecular markers.	Japan. J. Breed.	43(Suppl. 1)	161	1993	XA4,XA10,XA3	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa10, Xa-10,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
621		Yoshimura, S., N. Kurata, T. Sasaki and A. Yoshimura	Genetic analysis of bacterial blight resistance genes in rice by using molecular markers.	Recent Advances in Breeding	36	33-36.	1994	XA1,XA2,XA4,XA3	Xa1(Xe), Xe, Xa1, Xa-1,Xa2,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
622		Yoshimura, S., A. Yoshimura, R.J. Nelson, T.W. Mew and N. Iwata	Tagging Xa-1, the bacterical blight resistance gene in rice, by using RAPD markers.	Breeding Science	45	81-85.	1995	XA1	Xa1(Xe), Xe, Xa1, Xa-1
623		Yu, C.J. and T.T. Yao	Genetische studien beim Reis. II. Die Koppelung des Landhullspelzengens mit dem Photoperiodizitatsgen.	Bot. Bull. Acad. Sin.	9(1)	34-35.	1968	SE2	se2
624		Yu, G.X., D.P. Zhang and Y.F. Xie	Location of genes for resistance to Chinese strains of blight, Xanthomonas campestris pv. oryzae in IR28.	RGN	3	86-87.	1986	XA A*,XA H*	Xa a*, XAA, Xaa*, Xaa,Xa h*, XAH, Xah*, Xah
625		Yu, Z.H., D.J. Mackill, J.M. Bonman and S.D. Tanksley	Tagging genes for blast resistance in rice via linkage to RFLP markers.	Theor. Appl. Genet.	81(4)	471-476.	1991	PITA,PI1,PIZ	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
626		Yu, Z.H., T. Kinoshita, S. Sato and S.D. Tanksley	Morphological and RFLP markers are associated in rice.	RGN	9	116-118.	1992	D30,SD1,HG,RC,PR,D11,LAX1,GL1,D27,RF1	d30(d W), dW, dwf26, d30,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Hg, Fg,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Pr(Rp), Rp, Pr,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,d27(d t), dt, dwf23, d27, OsD27,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
627		Yu, Z.H., G.S. Khush and S.D. Tanksley	Assignment of RFLP linkage groups to rice chromosomes using primary trisomics.	RGN	11	149-155.	1994		
628		Yunoki, T., A. Ezuka, Y. Sakurai, H. Shinoda and K. Toriyama	Studies on the varietal resistance to rice blast. 3. Testing methods for field resistance on young seedling grown in greenhouse.	Bull. Chugoku Agric. Exp. Stn.,  Ser.E	6	1-19.	1970	PIF	Pi f, PIF, Pif, RMg3, Pi-f
629		Yunoki, T., A. Ezuka, T. Morinaka, Y. Sakurai, H. Shinoda and K. Toriyama	Studies on the varietal resistance of rice blast. 4. Variation of field resistance due to fungus strains.	Bull. Chugoku Agric. Exp. Stn.,  Ser.E	6	21-41.	1970	PIF	Pi f, PIF, Pif, RMg3, Pi-f
630		Zhang, A.F., B.S. Shen, X.K. Dai, M.H. Mei, M.A. Saghai Marrof and Z.B. Li	An RFLP-based genetic analysis of photoperiod sensitive male sterility in rice.	RGN	10	94-97.	1993	PMS2,PMS1	pms2*(Pms2,pgms,ms2P), Pms2, ms2-P, pms2*, ms74,pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
631		Zhang, G., E.R. Angeles, M.L.P. Abenes, G.S. Khush and N. Huang	Molecular mapping of a bacterial blight resistance gene on chromosome 8 in rice.	RGN	11	142-144.	1994	XA,XA,XA13	xa(t)*, Xa(t),xa(t)*,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
632		Zhang, G., Y. Lu and N. Huang	Molecular analysis of introgressed chromosomal segments in a set of near-isogenic lines of rice for fertility-restoring genes.	RGN	11	147-149.	1994	RF4,RF3	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
633		Zhu, L.H. and Z.Q. Xie	Progress in the exploitation of new dwarfing sources in rice breeding in China.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	I	405-408.	1989	SDG	sdg*, sd11
634		Zhu, L.H. and G.X. Lai	Genetic analysis for a dominant dwarf line, KL908.	RGN	11	92-93.	1994		
635		Zhu, L.H., Y. Chen, Y.B. Xu, J.C. Xu, H.W. Cai and Z.Z. Ling	Construction of a molecular map of rice and gene mapping using a double haploid population of a cross between Indica and Japonica varieties.	RGN	10	132-135.	1993	MAL1,EST10,CAT1,MAL2,AMP2,ACP2,ACP1,PI11,PIZH,BHC	Mal1, Mal I, Mal-I, Mal-1,Est10,Cat1, Cat_1,Mal2,Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Acp2,Acp1,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pizh,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
636		Zhu, Y.G. and J.H. Yu	Stability and inheritance of photoperiod-sensitive genic male sterility in rice.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	745-748.	1989	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
637		Zhuang, J.Y., C.D. Yang, H.R. Qian, C.Z. Zhao and K.L. Zheng	Somaclonal variation facilitating integration of classical and RFLP markers on chromosome 4 of rice.	RGN	11	114-116.	1994	PR,PRPB	Pr(Rp), Rp, Pr,Prpb(Pb), Pb, Prpb, Prp2
638		Zongtan, S. and H. Zuhua	Interaction between eui gene and WAMS cytoplasm of rice and improvement of panicle exertion of MS line.	S. Iyama and G. Takeda (eds.), Proc. 6th Internat. Congress of SABRAO.	II	753-756.	1989	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
639		Huang, N., S. McCouch, T. Mew, A. Parco and E. Guiderdoni	Development of an RFLP map from a doubled haploid population in rice.	RGN	11	134-137.	1994		
640		Katiyar, S.K., Y. Tan, Y. Zhang, B. Huang, Y. Xu, L. Zhao, N. Huang, G.S. Khush and J. Bennett	Identification of RAPD marker linked to the gene controlling gall midge resistance against all biotypes in China.	RGN	11	128-131.	1994	GM6	Gm6(t), Gm6
641		Tsai, K.H.	A gene accelerating the heading of late lines with ef-1 alleles.	RGN	10	83-85.	1993	ACEF1	Ac ef1, Acef1
642	7894488	Kurata, N., Y. Nagamine, K. Yamamoto, Y. Harushima, N. Sue, J. Wu, B.A. Antonio, A. Shomura, T. Shimizu, S-Y. Lin, T. Inoue, A. Fukuda, T. Shimano, Y. Kuboki, T. Toyama, Y. Miyamoto, T. Kirihara, K. Hayasaka, A. Miyao, L. Monna, H.S. Zhong, Y. Tamura, Z-X. Wang, T. Momma, Y. Umehara, M. Yano, T. Sasaki and Y. Minobe	A 300 kilobase interval genetic map of rice including 883 expressed sequences.	Nat Genet	8	365-372.	1994	ATP,PKC2,HSP2*,HSP4*,PKC1,GCW2,GCW4,ALD3,TRYP,CDC,SOD,ALD2,ANT,OCP,SALT	ATP*(atp1), ATPX, atp1,pkc2*, pkc2,hsp2*, hsp2,hsp4*, hsp4,pkc1*, pkc1,gcw2*, gcw2,gcw4*,Ald3*(ald1), Ald3, ald1,TRYP*(tin), TRYP*, tin, Tryp,cdc*, cdc,sod*, sod,Ald2*(ald2), Ald2, ald2,ant, ricANC1, ANC1,ocp*, ocp,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
643		Shinjyo, C. and S. Sato	Chromosomal location of a fertility restoring gene Rf-2.	RGN	11	93-95.	1994	RF2	Rf2 (Rfx), Rfx, Rf2
644		Shinjyo, C. and S. Sato	Chromosomal location of a fertility restoration gene Rf-2 in rice, Oryza sativa L.	Breeding Science	44(Suppl. 2)	182	1994	RF2	Rf2 (Rfx), Rfx, Rf2
645		Nakagahra, M.	Phylogenetic differentiation of rice plant from the stand point of gene distribution.	Recent Advances in Breeding	17	35-44.	1976	GA2,GA3,GA4,GA1	ga2,ga3,ga4(gaA), gaA, ga4,ga1
646		Suge, H.	Physiological genetics of internodal elongation under submergence in floating rice.	Jpn. J. Genet.	62(1)	69-80.	1987	EL	El*, El
647		S. N. Ahn, C. N. Bollich and S. D. Tanksley	RFLP tagging of a gene for aroma in rice	Theor. Appl. Genet.	84	825-828.	1992	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
648	7896104	Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley	Saturated molecular map of the rice genome based on an interspecific backcross population.	Genetics	138	1251-1274.	1994	PITA,IPI3,XA21,PI157,GL1,PI6,AMY3E,LAX1,AMY3D,AMY3A,SD1,ADH1,PI5,TRYP,SALT,EST,S5,D5,SK2(T)(SCL, FGR),GLH,WX1,TSV1,PR,XA2,ACS3,ATP,EST2,CL,WBPH1,TELSM1,ATUB,CYC1,R45S1,TELSA1,DN1,EF,TELSM3,PGD1,LA,Z2,HBV,LEC,SDH1,POX2,ACP2,ACP1,ACP4,BPH10,PI,IPI,XA10,PGI2,R5S1,XA5,AMY2A,PI11,PI30,RCH10,CALA,MAL1,SE3,AMY1B,XA4,GM2,D27,PI9,ACS1,LRT2,XA1,PI10,CALB,ACT1,PHYA,BHC,PIZ,CHT1,AMY1C,PIZH,AMY1A,_,AMY3B,AMY3C	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,IPi3(t)*, IPi3, Rmg57,Xa21*, Xa21, OsXA21,Pi157*, Pi157(t)*, Pi-157, Pi157,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Adh1, Adh1/2, adh1/adh2, OsADH1,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,TRYP*(tin), TRYP*, tin, Tryp,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,Est I2*, EstI2*, Est15, ESTL2,S5-3, S5-4,d5, dwf5,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Glh(t)*, Glh, Glh14,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,tsv1(RTSV), RTSV, tsv1,Pr(Rp), Rp, Pr,Xa2,ACC3*, ACC3, OsACS3, OS-ACS3,ATP*(atp1), ATPX, atp1,Est2, Est_2,Cl,Wph1(Wbph), Wbph1, Wph1,Telsm1*, Telsm1,atub*, atub,cyc1*, cyc1,R45s1*(rDNA1), rDNA1, r45s, R45s1,Telsa1*, Telsa1,Dn1,Ef(t)*, ef(t)*, Ef, ef,Telsm3*, Telsm3,Pgd1, 6Pgd1,la,z2,Hbv,Lec*, Lec,Sdh1, Skd,Pox2,Acp2,Acp1,Acp4,Bph10(t)*, Bph10,Pi(t)*, Pi(t),IPi(t)*, IPi. Rmg56,Xa10, Xa-10,Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b,R5s1*, r5s, R5s1,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi-30(t), Pi30(t),RCH10*, Cht13, Cht12, Rcht2,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,Mal1, Mal I, Mal-I, Mal-1,Se3(t), Se3,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Gm2, Gm-2, GM-2,d27(d t), dt, dwf23, d27, OsD27,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),ACC1*, OsACS1, Os-ACS1, ACC1,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,Xa1(Xe), Xe, Xa1, Xa-1,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,act1, AC1, RAC1, RAc1, ACT11, OsACT1,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Pizh,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,ZB8,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C
649		Hirabayashi, H. and T. Ogawa	RFLP mapping of Bph-1 (Brown planthopper resistance gene) in rice.	Breeding Science	45	369-371.	1995	BPH1	Bph1
651		Jena, K.K., G.S. Khush and G. Kochert	RELP analysis of rice (Oryza sativa L.) introgression lines.	Theor. Appl. Genet.	84	608-616.	1992	BPH10	Bph10(t)*, Bph10
652	2535506	Kay, S.A., B. Keith, K. Shinozaki, M.L. Chye and N.H. Chua	The rice phytochrome gene Structure, autoregulated expression and binding of  GT-1 to a conserved site in the 5' upstream region.	Plant Cell	1	351-360.	1989	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
653		Lin, S.Y., H. Ikehashi, S. Yanagihara and K. Kawashima	Segregation distortion via male gemetes in hybrids between Indica and Japonica or wide-compatibility varieties of rice (Oryza sativa L.).	Theor. Appl. Genet.	84	812-818.	1992		
654		Sano, Y.	Pollen-killers in rice.	Breeding Science	44(Suppl. 1)	298	1994	S12,S14,S13	S12(t),S14(t),
655	8102907	Wu, K.S. and S.D. Tanksley	Genetic and physical mapping of telomeres and microsatellites of rice.	Plant Mol. Biol.	22	861-872.	1993	TELSM1,TELSA1,TELSM3	Telsm1*, Telsm1,Telsa1*, Telsa1,Telsm3*, Telsm3
656	2034221	Xhu,Q. C.J.Lamb	Isolation and characterization of a rice gene encoding a basic chitinase.	Mol. Gen. Genet.	226	289-296	1991	RCH10	RCH10*, Cht13, Cht12, Rcht2
657		Yanagihara, S., H. Ikehashi, H. Araki and K. Maruyama	Difference in recombination frequency between chromogen (C) and waxy (wx) genes in Japonica and Indica rice (Oryza sativa L.) by using Japonica lines with a wide compatibility gene (S-5n).	Japan. J. Breed.	42	15-21.	1992	S5	S5-3, S5-4
658		Yu, Z.H., S.R. McCouch, T. Kinoshita, S. Sato and S.D. Tanksley	Association of morphological and RFLP markers in rice (Oryza sativa L. ).	Genome	38	566-574.	1995	SD1,RF1,D27,D11,D30,D5,HG,PR,CL,DN1,PGL,LA,RC,LAX1,GL1,D10	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,d27(d t), dt, dwf23, d27, OsD27,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d30(d W), dW, dwf26, d30,d5, dwf5,Hg, Fg,Pr(Rp), Rp, Pr,Cl,Dn1,pgl,la,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
659		Zheng, K., P. Shen, H. Quian and J. Wang	Tagging genes for wide compatibility in rice via linkage to RFLP markers.	Chinese J. Rice Sci.	6	145-150.	1992	WC	Wc*(S5-n,S-n), Wc1
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676		U.S.D.A.Agr.Res.Serv.	Rice gene symbolization and linkage groups	Crops Res. ARS	34-28	1-56	1963		
677		Yamaguchi, Y.	Etudes d'heredite sur la couleur des glumes chez le riz.	Bot. Mag. Tokyo.	35	106-112.	1921		
678		Yamaguchi, Y.	Kreuzungsuntersuchungen an Reispflanzen. I. Genetische Analyse der Granne, der Spelzenfarbe und der Endospermbeschaffenheit bei einigen Sorten des Reises.	Ber. Ohara. Inst. f. Landw. Forsch.	3	1-126.	1926		
679		Yamaguchi, Y.	Kreuzungsuntersuchungen an Reispflanzen. II. Ueber die zweite (S-M-) Koppelungsgruppe mit besonderer Berucksichtigung ihrer korre'ativen Beziehung zur Blutezeit, Vorlaufige Mitteilung.	Ber. Ohara. Inst. f. Landw. Forsch.	3	319-330.	1927		
680		Yamaguchi, Y.	Neuere genetische Untersuchungen uber die Reispflanze.	Zeitschrift fur Induktive Abstammungs- und Vererbungslehre (Mol. Genet. Gen. )	45	105-122.	1927		
681		Pai, C.	A modifier gene for peroxidase isozyme in rice.	RGN	2	63-64.	1985	MPOX1	M Pox1(M px1), MPx1, MPox1, Pox7
682		Ishikawa, R., T. Kinoshita and H. Morishima	A preliminary report on trisomic analysis of genes for isozymes	RGN	3	54-55.	1986	AMP2,PGD1,SDH1	Amp2(AlapA), Lap2, AlapA, Amp_2, Amp-2, Amp2,Pgd1, 6Pgd1,Sdh1, Skd
684		Kitano, H.	Inheritance and morphological characteristics of a panicle-degenerating mutant in rice.	Japan. J. Breed.	37(Suppl. 1)	202-203.	1987		
685		Tsai, K.H. and H.I. Oka	Genetic studies of yielding capacity and adaptability in crop plants. 4. Effects on an earliness gene, m-b in the genetic background of a rice variety, Taichung 65.	Bot. Bull. Acad. Sin.	11(1)	16-26.	1970	E1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
686		Aida, T., T. Takamure and T. Kinoshita	Inheritance of a physiological mutant showing retarded panicle development.	RGN	12	202-203.	1995	RP	rp(t)(rpt), rtp, rp
687		Aoki, T., N. Kameya, T. Li and I. Nakamura	cDNA clones encoding polysaccharide-modifying enzymes in elongating internodes of rice ao mutant.	Breeding Science	46(Suppl. 2)	29	1996	AO	ao
688		Ashikari, M., A. Yoshimura and N. Iwata	Fine mapping of d-1 dwarf gene in rice.	Breeding Science	46(Suppl. 2)	79	1996	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
689		Bligh, H.F.J., R.I. Till and C.A. Jones	A microsatellite sequence closely linked to the Waxy gene of Oryza sativa.	Euphytica	86	83-85.	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
690		Das, T.	Genetic relation between dormancy and aroma in rice.	RGN	12	209-211.	1995	SDRA,SK2(T)(SCL, FGR)	Sdra (Sd), Sdra, Sdua, Sdr6,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
691		Dung, L.-V. and Y. Sano	Comparative genetics of photoperiod sensitivity genes located on chromosome 6 in rice.	Breeding Science	46(Suppl. 2)	239	1996	SEPAT,SE1	se-pat(t), sepat(t)*(se), sepat(t)*,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
692		Eiguchi, M. and Y. Sano	Evolutionary significance of chromosome 7 in an annual type of wild rice.	RGN	12	187-189.	1995	SSV,LH,RC,G1	Ssv*, Dwf44, Ssv,Lh(t)*, lh(t),Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,g1 (lng), lng, g1, ELE, OsG1, G1/ELE
693		Fujiwara, M., C. Nakamura, K. Murata, N. Mori and C. Kaneda	Linkage analysis of brown-planthoper resistance gene, Bph9, in Oryza sativa ssp.indica cv. Pokkali.	Breeding Science	46(Suppl. 2)	72	1996	BPH9	Bph9, BPH9/26
694		Fukuoka, S. and K. Okuno	Chromosomal location of one of complementary recessive genes controlling hybrid breakdown in rice.	RGN	12	191-192.	1995	HWD2,HWD1	hwd2,hwd1
695		Fukuta, Y., M. Yano and A. Kobayashi	Genetic analysis of shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety,Nan-jing 11.	Breeding Science	44	325-331.	1994	SH4	sh4, sh4(t)*(sh3), sh3, sh4
696		Fukuta, Y., K. Tamura, M. Hirae, K. Fukui and S. Oya	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps Uhler) resistance.II. Localization of the chromosomal regions resistant to green rice leafhopper in Norin PL6.	Breeding Science	46(Suppl. 1)	68	1996	GRHA,GRHB	Grha(t)*, Grha, Grh2,Grhb(t)*, Grhb, Grh4
697		Gao, H.-P., X.-H. Lin, G.-X. Yu, D.-P. Zhang and Y.-F. Xie	Inheritance of resistance to bacterial blight of four Yunnan rice varieties.	RGN	12	233-234.	1995	XA,XA	xa(t)*, Xa(t),xa(t)*
698		Hayasaka, H., M. Takamatsu, Y. Kuboki, M. Yano, K. Matsunaga and T. Sasaki	Mapping genes conferring rice blast resistance in rice variety Kasalath using RFLP markers. Linkage analysis of the resistance gene on chromosome 6.	Breeding Science	45(Suppl. 2)	168	1995		
699		Hayasaka, H., A. Miyao, M. Yano, K. Matsunaga and T. Sasaki	RFLP mapping of a rice blast resistance gene Pi-k.	Breeding Science	46(Suppl. 2)	68	1996	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
700		Hayashi, N., I. Ando and H. Naito	Gene analysis of a new blast resistance in the paddy rice variety, Aichi Asahi.	Breeding Science	46(Suppl. 2)	168	1996	PI14	Pi14(t), Pi14(t)*, Pi14
701		Hirabayashi, H. and T. Ogawa	Linkage analysis of brown planthopper resistance gene Bph-1 in rice by RFLP analysis.	Breeding Science	46:(Suppl. 1)	69	1996	BPH1	Bph1
702		Hirano, H.-Y., M. Eiguchi, M, Matsumoto and Y. Sano	Analysis of expression of the rice Wx gene by transient assay system -- Identification of the sequence element responsible for the difference in the expression level of Wxa and Wxb.	Breeding Science	46(Suppl. 1)	50	1996	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
703		Hittalmani, S., M.R. Foolad, T. Mew, R.L. Rodriguez and N. Huang	Development of a PCR-based marker to identify rice blast resistance gene, Pi-2(t), in a segregating population.	Theor. Appl. Genet.	91	9-14.	1995	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
704		Hong, D. and M. Ichii	Genetic analysis of short root in rice (Oryza sativa L.).	Chinese J. Rice Sci.	8	200-204.	1994	SRT1	srt1*, srt1
705		Hong, S.K., T, Aoki, H. Kitano, H. Satoh and Y. Nagato	Phenotypic diversity of 188 rice embryo mutants.	Dev Genet.	16	298-310.	1995	AGR1,APD1,CLE1,EML1,EML1,GLE2,GLE3,VEP2,VEP3,SHL1,SHL3,ORL1,RAL1,VEP1,SPO1,RE3,GLE1,RE1,RE2,GE1,SHL2,SHL4,SHO2,SHO1	agr1*, agr1,apd1, apd1*,cle*, cle1,eml1,eml1*, eml1,gle2*, gle2,gle3*, gle3,vep2*, vep2,vep3*, vep3,shl1, sh1,shl3, sh3,orl1,ral1*, ral1,vep1*, vep1,spo1*, shp1, spt1,re3,gle1*. gle1,re1,re2,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES,shl2, SHL2, sh2, OsRDR6, RDR6,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
706		Hong, S.K., T. Aoki, H. Kitano, H. Satoh and Y. Nagato	Temperature-sensitive mutation, embryoless 1, affects both embryo and endosperm development in rice.	Plant Sci.	108(2)	165-172.	1995	EML1,EML1,GE1	eml1,eml1*, eml1,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES
707		Hong, S.K., H. Kitano, H. Satoh and Y. Nagato	Mutations affecting embryo size in rice.	RGN	12	196-199.	1995	CLE1,RE1,SPO1,RE3,RE2	cle*, cle1,re1,spo1*, shp1, spt1,re3,re2
708	8681786	Hong, S.K., H. Kitano, H. Satoh and Y. Nagato	How is embryo size genetically regulated in rice?	Development	122	2051-2058.	1996	GE1,CLE1,ENL1,SPO1,ENL1,RE2,RE3,GLE1,RE1	ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES,cle*, cle1,enl1*,spo1*, shp1, spt1,enl1,re2,re3,gle1*. gle1,re1
709		Ichitani, K., H. Nishida, Y. Nishida, Y. Okumoto and T. Tanisaka	Complementary effect of heading-time genes, Se-1 and ef-1, on basic vegetative growth in rice.	Breeding Science	45(Suppl. 2)	180	1995	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
710		Ichitani, K., Y. Okumoto and T. Tanisaka	The origin of a photoperiod-sensitivity gene, Se-1n, distributed among rice varieties grown in Hokkaido.	Breeding Science	46(Suppl. 1)	86	1996	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
711		Ichitani, K., Y. Nishida, Y. Okumoto and T. Tanisaka	Gene analysis of rice varieties grown in Taiwan with special reference to Se-1 and Ef-1 loci.	Breeding Science	46(Suppl. 2)	66	1996	SE1,EF1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
712		Imbe, T., H. Hashim, M. Iwasaki and T. Omura	Resistance in some Japonica rice cultivars to rice tungro spherical virus.	Japan. J. Breed.	43	549-556.	1993	TSV1	tsv1(RTSV), RTSV, tsv1
713		Inoue, H., Y. Okumoto and T. Tanisaka	Early heading-time gene of the Se-1 locus detected in a rice variety, Taichung 65.	Breeding Science	46(Suppl. 2)	65	1996	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
714		Inukai, T., R.S. Zeigler, S. Sarkarung, M. Bronson, L.V. Dung, T. Kinoshita and R.J. Nelson	Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population.	Theor. Appl. Genet.	93	560-567.	1996	PI12,PI7,PI3,PIZ5,PI5,PITA	Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi7, Pi-7(t), Pi7(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
715		Isshiki, M., M. Nakajima, T. Izawa, H. Satoh and K. Shimamoto	Regulation of waxy gene expression in rice 2.dull regulatory genes for Wx gene expression.	Breeding Science	45(Suppl. 2)	41	1995	DU5,DU4,DU3,DU2,DU1	du5,du4,du3, OsCBP20, OsCBP20/du3, CBP20,du2,du1
716		Iwamoto, M., Y. Kuboki, L. Monna, H. Hayasaka, M. Yano, K. Matsunaga and T. Sasaki	Fine scale linkage mapping of a blast resistance gene Pi-b using pooled-sampling method.	Breeding Science	46(Suppl. 1)	91	1996	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
717		Kaji, R. and T. Ogawa	RFLP mapping of a blast resistance gene, Pi-km, in rice.	Breeding Science	46(Suppl. 1)	70	1996	PIK,PIKM	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
718		Kaji, R., T. Ogawa and M. Nishimura	Determination of chromosomal regions of a blast resistance gene, Pi-t, in rice.	Breeding Science	46(Suppl. 2)	69	1996	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
719		Katayose, Y., Y. Kuboki, N. Kurata, M. Yano and T. Sasaki	Physical mapping of region containing a photoperiod sensitivity gene, Hd-1(Se-1), based on a fine scale linkage map.	Breeding Science	46(Suppl. 2)	53	1996	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
720		Ketipearachchi, Y., C. Nakamura, C. Kaneda, N. Mori and S.L. Amarasiri	Virulence acquisition of brown planthopper (BPH), Nilaparvata lugens Stal, through continuous culturing on rice cultivars with BPH resistance genes.	Breeding Science	46(Suppl. 2)	173	1996	BPH8,BPH9	bph8,Bph9, BPH9/26
721		Kitano, H., Y. Tamura, H. Satoh and Y. Nagato	Hierarchical regulation of organ differentiation during embryogenesis in rice.	Plant J.	3(4)	607-610.	1993	APD1,CLE1,GLE2,SPO1,SHL1,SHP1,GLE1,SHL2,RE1	apd1, apd1*,cle*, cle1,gle2*, gle2,spo1*, shp1, spt1,shl1, sh1,shp1,gle1*. gle1,shl2, SHL2, sh2, OsRDR6, RDR6,re1
722		Kobayashi, N., R. Ikeda and E.A. Vaughan	Resistance to rice tungro viruses in wild species of rice (Oryza spp.).	Japan. J. Breed.	43	247-255.	1993	TSV1	tsv1(RTSV), RTSV, tsv1
723		Koh, H.-J., M.-H. Heu and S.R. McCouch	Molecular mapping of the ges gene controlling the super-giant embryo character in rice (Oryza sativa L.).	Theor. Appl. Genet.	93	257-261.	1996		
724		Kubo, A., K. Harada, T. Shimamune, T. Matsuda, H. Sato and Y. Nakamura	Influence of sugary-1 mutations on key enzymes of starch biosynthesis and polyglucan structure in developing endosperms of rice.	Breeding Science	46(Suppl. 2)	202	1996	SUG	sug(su), su, sug1, su1, su-1
725		Kumamaru, T. and H. Satoh	Linkage analysis of genes, ge (giant embryo) and esp-1 (endosperm storage protein-1) on chromosome 7.	RGN	12	208-209.	1995	ESP1,RFS	esp1(rsp1), rsp1, esp1,rfs, cul7, OsRFS
726		Liang, Z.-W. and M. Ichii	Genetic analysis of a short-root mutant LM 10 induced from rice (Oryza sativa L.) cultivar IR8.	Breeding Science	46	373-377.	1996	SRT2	srt2*, srt2
727		Liang, Z.-W. and M. Ichii	Inheritance of a short-root mutant LMN 35 in rice (Oryza sativa L.).	Breeding Science	46(Suppl. 2)	277	1996	SRT2,SRT3	srt2*, srt2,srt3*, srt3
728		Lin, X.-H., D.-P. Zhang, Y.-F. Xie, C.-F. Zhang and H.-P. Gao	Mapping a new gene for resistance to bacterial blight based on RFLP markers.	RGN	12	234-236.	1995	XA,XA	xa(t)*, Xa(t),xa(t)*
729		Maeda, H., H. Mori, J. Kuroda, T. Ishii, I. Takamure, T. Kinoshita and O. Kamijima	Molecular mapping of semidwarfing gene, sd-1, using RAPD and RFLP markers.	Breeding Science	46(Suppl. 1)	66	1996	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
730		Maekawa, M., K. Rikiishi, K. Matsuura and K. Noda	Genic analysis of rhizomatous trait of wild species (Oryza longistaminata) in rice.	Breeding Science	46(Suppl. 1)	323	1996	RHZ	Rhz(t), Rhz1
731		Maekawa, M., K. Rikiishi, T. Matsuura and K. Noda	Revertants originated from chlorophyll mutants from the distantly related rice varieties.	Breeding Science	46(Suppl. 2)	107	1996	CTB,YL	Ctb*, Ctb, Ctb1,,yl*
733		Malik, S.S., D.S. Brar and G.S. Khush	Identification of two new null alleles in traditional rice germplasm of Philippines.	RGN	12	206-207.	1995	CAT1,PGI1	Cat1, Cat_1,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
734		Minakuchi, S., H. Satoh and A. Yoshimura	Chromosomal location of some prolamin genes in rice.	Breeding Science	46(Suppl. 1)	103	1996	PRO2,PRO3,PRO5,PRO4,PRO1	Pro2*, Pro2,Pro3*, Pro3,Pro5*, Pro5,Pro4*, Pro4,Pro1*, Pro1
735		Miyahara, K., M. Kusaba, E. Sassa, S. Iida, T. Takano and T. Nishio	Analysis of glutelin gene in rice low glutelin line 'LGC-1'.	Breeding Science	46(Suppl. 1)	42	1996	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
736		Morino, K., M. Issiki, M. Nakajima, T. Izawa and K. Shimamoto	Regulation of waxy gene expression in rice l.Is Wxb gene a splicing mutant ?	Breeding Science	45(Suppl. 2)	40	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
737		Murai, M. and M. Iizawa	Effects of major genes controlling morphology of panicle in rice.	Breeding Science	44	247-255.	1994	DN1,LAX1,RI,CL,UR1,SP1	Dn1,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,ri,Cl,Ur1,sp, SP, OsNPF4.1, NPF4.1
738		Murai, M., N. Shinbashi, S. Sato, K. Sato, H. Araki and M. Ehara	Effect of dwarfing gene from Dee-geo-woo-gen on culm and internode lengths, and its response to fertilizer in rice.	Breeding Science	45	7-14.	1995	SD1,D18	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
739		Murai, M., S. Sato, K. Ise and Y. Semihira	Effects of the dwarfing gene from Dee-geo-woo-gen and others on emergence ability under deep seeding condition in rice.	Breeding Science	45	163-171.	1995	D12,SD1	d12(d50), dwf11, d50, d12, d32, F71, DMT9,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
740		Nagamine, T., K. Kadowaki, A. Goto and T. Ajioka	A new source of cytoplasmic male sterility found in Bangladesh Boro rice.	RGN	12	232-235.	1995	[CMS-KHIABORO]	[cms-Khiaboro]*, [cms-Khiaboro]
741		Nagasawa, N., M. Miyoshi, H. Kitano, H. Satoh and Y. Nagato	Mutations associated with floral organ number in rice.	Planta.	198	627-633.	1996	FON2,FON1	fon2, FON4, OsFON4, FON2/FON4, TG1,OsFON1, fon1, OsRLCK219, RLCK219
742		Nagasawa, N., M. Miyoshi, Y. Sano and Y. Nagato	Superman-like mutations in rice.	Breeding Science	46(Suppl. 1)	165	1996	FON1,DL,FON2	OsFON1, fon1, OsRLCK219, RLCK219,DL, dl(lop), lop, dl, dl1,fon2, FON4, OsFON4, FON2/FON4, TG1
743		Nagasawa, N., M. Miyoshi and Y. Nagato	Superwoman mutations in rice flower.	Breeding Science	46(Suppl. 2)	271	1996	FON1,DL,SPW1	OsFON1, fon1, OsRLCK219, RLCK219,DL, dl(lop), lop, dl, dl1,SPW1, spw1, MADS16, OsMADS16
744		Nair S., J.S. Bentur, U. Prasada Rao and M. Mohan	DNA markers tightly linked to a gall midge resistance gene (Gm2) are potentially useful for marker-aided selection in rice breeding.	Theor. Appl. Genet.	91	68-73.	1995	GM2	Gm2, Gm-2, GM-2
745		Nakamura, S., K. Rybka, S. Asakawa, K. Akiyama, N. Ohmido, K. Fukui, N. Shimizu and S. Kawasaki	BAC contig construction around the rice blast resistance genes Pi-b and Pi-ta2 which is located in the centromeric region of chromosome 12.	Breeding Science	46(Suppl. 2)	51	1996		
746		Nakamura, H., Y. Toukairin, S. Hidaka, S. Ejiri and K. Tsutsumi	Genomic polymorphysm at the cytoplasmic aldolase-encoding loci and their different expression in rice varieties.	Breeding Science	46(Suppl. 2)	326	1996	PITA,ALD1,PIB	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Ald1*, Ald1,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
747		Nishikubo, N., T. Araki, Y. Hirata, H. Kitano and Y. Katayama	Accumulation of polyphenolic substance in the cell wall of rice dwarf mutant (Fukei 71).	Breeding Science	46(Suppl. 2)	274	1996	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
748		Ogi, Y., H. Kato, K. Maruyama and F. Kikuchi	The effects on the culm length and other agronomic characters caused by semidwarfing genes at the sd-1 locus in rice.	Japan. J. Breed.	43	267-275.	1993	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
749		Ohmori, T., W. Sakamoto, M. Maekawa and F. Motoyoshi	Analysis of the maize B-Peru homologues regulating anthocyanin accumulation in purple leaf lines of rice.	Breeding Science	46(Suppl. 1)	19	1996	PL	Pl, Pl1
750		Ohmori, T., M. Maekawa, W. Sakamoto and F. Motoyoshi	Isolation and analysis of cDNA homologues of the maize B-Peru gene in a purple leaf line of rice.	Breeding Science	46(Suppl. 2)	35	1996	PL	Pl, Pl1
751		Okumoto, Y., K. Ichitani, H. Inoue and T. Tanisaka	Photoperiod insensitivity gene essential to the varieties grown in the northern limit region of paddy rice (Oryza sativa L.) cultivation.	Euphytica	92	63-66.	1996	E2,E3,E1	,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
752		Okumoto, Y., M. Maekawa, K. Ichitani and T. Tanisaka	Complementary effect of a photoperiod sensitivity gene in Hokkaido rice varieties and that in a strong cold resistant rice variety Silewah.	Breeding Science	46:(Suppl. 1)	85	1996	SE1,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
753		Pan, Q.H., T. Tanisaka and H. Ikehashi	Studies on the genetics and breeding of blast resistance in rice IV. Gene analysis for the blast resistance of a indica variety Kasalath.	Breeding Science	45(Suppl. 2)	170	1995	PI8	Pi8, Pi-8
754		Pan, Q.H., L. Wang, H. Ikehashi and T. Tanisaka	Identification of a new blast resistance gene in the indica rice cultivar Kasalath using Japanese differential cultivars and isozyme markers.	Phytopathology	86(10)	1071-1075.	1996	PIZ,PI8,PII,PIZT	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi8, Pi-8,Pi i, Pii, Pi-i, Pii(t),Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
755		Pan, Q.H., T. Tanisaka, H. Ikehashi and H. Yamagata	Studies on the genetics and breeding of blast resistance in rice V. Identification of two blast resistance genes in a Yunnan native variety, Maowangu.	Breeding Science	46(Suppl. 1)	79	1996	PI14,PI13	Pi14(t), Pi14(t)*, Pi14,Pi13(t), Pi13(t)*, Pi13
756		Pan, Q.H., T. Tanisaka and H. Ikehashi	Studies on the genetics and breeding of blast resistance in rice VI. Gene analysis for the blast resistance of two Yunnan native cultivars GA20 and GA25.	Breeding Science	46(Suppl. 2)	70	1996	PIK,PI15,PIKG	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi15(t), Pi15, RMg34.,Pikg, Pik-g
757		Reddy V.S., S. Dash and A.R. Reddy	Anthocyanin pathway in rice (Oryza sativa L.) identification of a mutant showing dominant inhibition of anthocyanins in leaf and accumulation of proanthocyanidins in pericarp.	Theor. Appl. Genet.	91	301-312.	1995	PL,ILB	Pl, Pl1,Ilb*, Ilb
758		Rybka, K., M. Miyamoto, K. Akiyama, S. Nakamura, N. Sasaki, I. Ando and S. Kawasaki	Physical mapping of a rice blast resistance gene Pi-b.	Breeding Science	45(Suppl. 2)	169	1995	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
759		Saka, N. and A. Syumiya	Phenotype variations for test conditions and linkage relations between rice dwarf disease(RDV)-resistant and heading date at RDV resistant rice lines derived from c.v. Rantaj-emas2.	Breeding Science	46(Suppl. 2)	171	1996	GRH3	Grh3*, Grh3, Grh3(t)
760		Saka, N., T. Tuji, T. Toyama, H. Nakamae and T. Izawa	Linkage analysis of rice dwarf disease resistant gene Grh-a(t) in rice by RFLP analysis.	Breeding Science	46(Suppl. 2)	71	1996	GRH3	Grh3*, Grh3, Grh3(t)
761		Sano, Y. and S. Kobayashi	Cross-incompatibility based on genetic differentiation in both mega- and microspores in rice.	Breeding Science	46(Suppl. 1)	161	1996	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
762		Sato, S., A. Tamaki and C. Shinjyo	Genetic relation between an earliness gene Ef-1 and anther length in rice, Oryza sativa L.	Breeding Science	44	127-132.	1994		
764		Sato, S., S. Ishikawa, M. Shimono and C. Shinjyo	Genetic studies on an awnness gene An-4 on chromosome 8 in rice, Oryza sativa L.	Breeding Science	46	321-327.	1996	AN4	An4
765		Sato, S., S. Irei and C. Shinjyo	Estimation of distribution of an earliness gene Ef-1 in Japanese improved rice varieties.	Breeding Science	46(Suppl. 2)	77	1996	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
766	8755613	Sato Y., S.-K. Hong, A. Tagiri, H. Kitano, N. Yamamoto, Y. Nagato and M. Matsuoka	A rice homeobox gene, OSH1, is expressd before organ differentiation in a specific region during early embryogenesis.	Proc. Natl. Acad. Sci. U.S.A.	93	8117-8122.	1996	ORL1,OSH1	orl1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
767		Satoh, H., T. Kumamaru, M. Ogawa, M. Siraishi, B. G. Im, M.Y. Son and Y. Takemoto	Spontaneous57H mutants in rice.	RGN	12	194-196.	1995	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
768		Satoh, N., S.K. Hong, H. Kitano, M. Matsuoka and Y. Nagato	Characterization of rice shootless mutants using several molecular markers.	Breeding Science	46(Suppl. 2)	270	1996	SHL1,SHL3,SHL2,SHL4	shl1, sh1,shl3, sh3,shl2, SHL2, sh2, OsRDR6, RDR6,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2
769		Shao, Y. and X.-H. Tang	Allelic relation between photoperiod-sensitive genic male-sterility and cytoplasmic-genic male sterility of BT type in rice.	RGN	12	231-232.	1995	MS1P,MS2P	ms1P*,ms2P*
770		Singh, K., D.S. Multani and G.S. Khush	A new spotted leaf mutant in rice.	RGN	12	192-193.	1995	SPL11	spl11, spl11*, OsPUB11, PUB11
773		Singh, K., A. Sanchez and G.S. Khush	Linkage relationships of some marker genes in rice.	RGN	12	203-204.	1995	GF2,Z8,BC2	gf2,z8,bc2, bc-2
774		Singh, K., B. de los Reyes, D.S. Brar and G.S. Khush	Arm location of Adh-1 and Sdh-1 isozymes using secondary trisomics.	RGN	12	211-212.	1995	SDH1,ADH1	Sdh1, Skd,Adh1, Adh1/2, adh1/adh2, OsADH1
775		Son, M.Y., H. Satoh, Y. Takemoto and M. Ogawa	New type mutants for glutelin precursor in rice.	Breeding Science	46(Suppl. 1)	57	1996	GLUP5,GLUP6	Glup5(t)*, Glup5(t), Glup5,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
776		Subudhi, P.K., R.P. Borkakati, S.S. Virmani and N. Hung	Identification of RAPD markers linked to rice thermosensitive genetic male sterility gene by bulk segregant analysis.	RGN	12	228-231.	1995	TMS3	tms3(t)*, ms82
777		Sun, X.-L., H.-W. Cai, J.-C. Xu, L.-H. Zhu and X.-K. Wang	Two newly found aminopeptidase loci and allelic variation in Asian cultivars.	RGN	12	189-191.	1995	AMP5,AMP3,EST2,AMP6	Amp5,Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,Amp6(t)*, Amp6
778		Suzuki, Y., M. Ohsawa, J. Terao and U. Matsukura	Development of lipoxygenases in embryo and seedling of rice variety lacking lipoxygenase-3 in its seed during ripening and germination.	Breeding Science	46(Suppl. 1)	153	1996	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
779		Takamure, I. and H. Hayashi	The effects of temperature on character expression of mutants induced by gamma-ray irradiation to anther culture in rice.	Breeding Science	45(Suppl. 2)	174	1995	LKF,MIK	Lk f, Lkf,mi k, mik, mi2
780		Takamure, I. and H. Yoshimi	Genetic analyses of two small grain mutants induced in rice cultivars.	Breeding Science	46(Suppl. 2)	108	1996	LKF,MIK	Lk f, Lkf,mi k, mik, mi2
781		Takamure, I., M.C. Hong and T. Kinoshita	Genetic analyses for two kinds of mutants for long grain.	RGN	12	199-201.	1995	LK1	lk1(t), lkna, lk1
782		Takamure, I., M.C. Hong and T. Kinoshita	Genetic interactions between major genes concerned with grain size in rice.	Breeding Science	46(Suppl. 1)	78	1996	LK1,LKF,MI,LKI1,LK2,MIK,D11,D2,D1	lk1(t), lkna, lk1,Lk f, Lkf,Mii, Mi1,lk i1, lki1, lk-i-1,Lk2(t) (Lknb), Lknb, Lk2,mi k, mik, mi2,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
783		Takemoto, Y., M. Yoshii, M.Y. Son, M. Ogawa and H. Satoh	Deposition of glutelin precursors in protein bodies of 57H mutants in rice.	Breeding Science	46(Suppl. 2)	273	1996	GLUP3,GLUP1,GLUP2	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,glup2(esp6, gup2), esp6, gup2, glup2
784		Takita, T.	A new dominant gene for brown planthopper resistance found in an improved Japanese rice strain.	Breeding Science	46(Suppl. 1)	211	1996	BPH	Bph(t)*, Bph11
786		Teraishi. M., M. Kawase, Y. Okumoto and T. Tanisaka	Studies on the utilization of a mutator induced in rice 10. Isolation of DNA spots specific to a mutable slender-glume gene, slg, by RLGS method.	Breeding Science	45(Suppl. 2)	181	1995	SLG	slg, Rurm1, Urm1
787		Teraishi, M., H. Hirochika, Y. Okumoto and T. Tanisaka	Studies on the utilization of a mutator induced in rice. 11. Approach to map-based cloning of the slender glume gene slg using rice YAC library.	Breeding Science	46(Suppl. 2)	90	1996	SLG	slg, Rurm1, Urm1
788		Tooyama, T., T. Yamamoto, T. Tsuji, K. Fujii, M. Yano, Y. Nagamura, T. Sasaki and A. Shumiya	Chromosomal location of the brown plant hopper resistance gene Bph-1 revealed by RFLP mapping.	Breeding Science	45(Suppl. 2)	171	1995	BPH1	Bph1
789		Tsai, K.H.	Multiple alleles detected at the Ef-1 locus.	RGN	12	204-206.	1995		
790		Umemura, T., M. Kuroyanagi, P. Perata, Y. Futsuhara and J. Yamaguchi	Functional promoter analysis of rice alpha-amylase gene, RAmy3D (part 2).	Breeding Science	46(Suppl. 2)	31	1996	AMY3E,AMY3D	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
791		Wan, J. and H. Ikehashi	Identification of a new locus S-16 causing hybrid sterility in native rice varieties (Oryza sativa L. ) from Tai-hu lake region and Yunnan province,China.	Breeding Science	45	461-470.	1995	S16	
792		Wan, J. and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.). VII.	Breeding Science	45(Suppl. 2)	191	1995	S17	S17(t)*
793		Wan, J. and H. Ikehashi	Evidence for mutational origin of hybrid sterility genes in rice (Oryza sativa L.).	Breeding Science	46	167-172.	1996	S7,S5	S7,S5-3, S5-4
794		Wan, J. and H. Ikehashi	A new locus for hybrid sterility in remote crosses of cultivated rice (Oryza sativa L.).	Breeding Science	46(Suppl. 1)	87	1996	S7,GA11	S7,ga11
795		Wan, J., T. Nakazaki and H. Ikehashi	Analyses of genetic loci for diameter of seminal root with marker genes in rice.	Breeding Science	46(Suppl. 2)	75	1996	DSE	Dse*, Dse
796		Wu, X., Y. Kuramoto, T. Saeda, K. Takeda and H. Kitano	Linkage found between the dominant and the recessive mutant gene, respectively expressingdm type internode elongation pattern in rice.	Breeding Science	46(Suppl. 1)	88	1996	SSI1,SSI2	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1,ssi2*, ssi2
797		Xu, K. and D.J. Mackill	RAPD and RFLP mapping of a submergence tolerance locus in rice.	RGN	12	244-245.	1995	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
798		Xu, K. and D.J. Mackill	A major locus for submergence tolerance mapped on rice chromosome 9.	Molecular Breeding	2(3)	219-224.	1996	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
799		Yamamoto, T., Y. Kuboki, T. Nishikawa, M. Yano and T. Sasaki	Linkage analysis of QTL conferring heading date on chromosome 7 in rice.	Breeding Science	46(Suppl. 1)	83	1996	SE8	Se8(t)*
800		Yamamoto, T., M. Yano, S.Y. Lin and T. Sasaki	Hd-6, a newly detected quantitative trait locus conferring heading date in rice as revealed by analysis of backcross progenies.	Breeding Science	46(Suppl. 2)	59	1996	HD6	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
802		Yano, M., T. Yamamoto, Y. Kuboki, S.Y. Lin, C. Orihara and T. Sasaki	Fine mapping of quantitative trait loci, Hd-3, associated with heading date in rice chromosome 6.	Breeding Science	46(Suppl. 2)	58	1996	E1,HD3A	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
803		Yasuda, T., Y. Okumoto and H. Ikehashi	Analysis of complementary loci for delayed flowering in F1 hybrids of Indica-Japonica crosses.	Breeding Science	46(Suppl. 2)	64	1996	E1,SE1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
804		Yasui, H., S. Yazawa, A. Yoshimura and N. Iwata	RFLP mapping of genes for resistance to Japanese green rice leafhopper (Nephotettix cincticeps Uhler) in rice cultivars DV 85 and IR 24.	Breeding Science	46(Suppl. 2)	174	1996	GRHB,GRHA	Grhb(t)*, Grhb, Grh4,Grha(t)*, Grha, Grh2
805		Yokoo, M.	Heading disturbance by long-day length treatment during reproductive stage in photoperiod-sensitive rice.	Breeding Science	44	67-70.	1994	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
806		Yokozeki, Y., A. Nakamura, A. Inagaki, N. Ichikawa, Y. Koshino, H. Akagi, H. Shimada, T. Tsuchiya, C. Shinjyo and T. Fujimura	DNA markers of a fertility restoration gene Rf-1 in rice, Oryza sativa L.	Breeding Science	46(Suppl. 1)	73	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
807		Yoshiba, Y., Y. Harada and Y. Futsuhara	Detection of a protein and differences in the population of translatable mRNA specific to dwarf rice   (Oryza sativa L.).	Japan. J. Breed.	43	525-535.	1993		
808		Yoshimura, S., Y. Umehara, N. Kurata, Y. Nagamura, T. Sasaki, Y. Minobe and N. Iwata	Identification of a YAC clone carrying the Xa-1 allele, a bacterial blight resistance gene in rice.	Theor. Appl. Genet.	93	117-122.	1996	XA1	Xa1(Xe), Xe, Xa1, Xa-1
809		Yoshihara, T., H. Washida and F. Takaiwa	Analysis of cis-regulatory regions involved in the endosperm specific expression of rice storage protein glutelin GluA-3 gene (5).	Breeding Science	46(Suppl. 1)	253	1996	GLU6	Glu6*(GluA4), Glu6, GluA4, GluA-4
810		Yu, Z.H., D.J. Mackill, J.M. Bonman, S.R. McCouch, E. Guiderdoni, J.L. Notteghem and S.D. Tanksley	Molecular mapping of genes for resistance to rice blast (Pyricularia grisea Sacc.).	Theor. Appl. Genet.	93	859-863.	1996	SALT,PI1,PI30,PITA	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-30(t), Pi30(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
811		Zhang, G., E.R. Angeles, M.L.P. Abenes, G.S. Khush and N. Huang	RAPD and RFLP mapping of the bacterial blight resistance gene xa-13 in rice.	Theor. Appl. Genet.	93	65-70.	1996	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
812		Zhang, Q., T. Abe and T. Sasahara	Selection of indica rice with colored endosperm and genetic analysis.	Breeding Science	46(Suppl. 2)	203	1996	PL	Pl, Pl1
813		Maheswaran, M., D.J. Mackill, N. Huang, S.R. Sreerangasamy and S.R. McCouch	Identification of RAPD markers linked to Se-3(t), a gene enhancing the level of photoperiod sensitivity in rice.	RGN	12	219-221.	1995	SE3	Se3(t), Se3
814		Dalmacio, R., D.S. Brar, L.A. Sitch, S.S. Virmani and G.S. Khush	Oryza perennis A new source of cytoplasmic male-sterility in rice.	RGN	9	108-110.	1992	[CMS-IR66707A]	[cms-IR66707A]*, [cms-IR66707A]
815		Dalmacio, R., D.S. Brar, T. Ishii, L.A. Sitch, S.S. Virmani and  G.S. Khush	Identification and transfer of a new cytoplasmic malesterility source from Oryza perennis into indica rice (O.sativa).	Euphytica	82	221-225.	1995	[CMS-IR66707A]	[cms-IR66707A]*, [cms-IR66707A]
816		Hiraiwa, S. and S. Tanaka	Induction of male-sterile mutation in rice.	Gamma Field Symposia	19	103-115.	1980		
817		Kadowaki, K., K. Yazaki, T. Osumi, K. Harada and M. Nakaghara	Mitochondrial DNA polymorphism in male-sterile cytoplasm of rice.	Theor. Appl. Genet.	75	234-236.	1988	[CMS-GAM],[CMS-SP]	[cms-GAM]*, [cms-GAM],[cms-sp]*, [cms-sp]
818	2148966	Kadowaki,K.I., Suzuki,T. and Kazama,S.	A chimeric gene containing the 5' portion of atp6 is associated with cytoplsmic male-sterility of rice.	Mol. Gen. Genet.	224	10-16.	1990	_,AATP6,[CMS-BO]	atp6, N-atp6, B-ATP6, B-atp6, atp6-1,A-atp6,[cms-bo]
819		Lin, S.C. and L.P. Yuan	Hybrid rice breeding in China.	In Innovative Approaches to Rice Breeding. IRRI, Manila, Philippines.		35-51.	1980	[CMS-GAM],[CMS-HL],[CMS-WA]	[cms-GAM]*, [cms-GAM],[cms-HL],[cms-WA]
820		Mese, M.D., L.E. Azzini and J.N. Rutger	Isolation of genetic male-sterile mutants in a semidwarf japonica rice cultivar.	Crop Sci.	24	523-525.	1984		
821		Oard, J.H. and J. Hu	Inheritance and characterization of pollen fertility in photoperiodically sensitive rice mutants.	Euphytica	82	17-23.	1995	PMS	pms(t)*
822		Oard, J.H., J. Hu and J.N. Rutger	Genetic analysis of male-sterility in rice mutants with environmentally influenced levels of fertility.	Euphytica	55	179-186.	1991	PMS	pms(t)*
823		Sakamoto, W., K. Kadowaki, S. Tano and T. Yabuno	Analysis of mitochondrial DNAs from Oryza glaberrima and its cytoplasmic substituted line for Oryza sativa associated with cytoplasmic male-sterility.	Jpn. J. Genet.	65	1-6.	1990	[CMS-AK]([CMS-JP])	[cms-ak]([cms-jp]), [cms-jp], [cms-ak]
824		Shen, Y.W., Q.H. Cai and M.W. Gao	Preliminary characterization of fertilty-restoring mutants induced from cytoplasmic male-sterile rice.	RGN	10	90-92.	1993	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
825		Shen, Y.W., Q.H. Cai and M.W. Gao	A new thermosensitive radiation-induced male sterile rice line.	RGN	10	97-98.	1993	TMS	tms(t)*, ms83
826		Shen, Y., Q. Cai, M. Gao and X. Wang	Isolation and genetic characterization of a fertility-restoring revertant induced from cytoplamic male sterile rice.	Euphytica	90	17-23.	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
827		Singh, R.J. and H. Ikehashi	Monogenic male-sterility in rice Induction, identification and  inheritance.	Crop Sci.	21	286-289.	1981	MS IR36(T)*	ms IR36(t)*), msIR36, ms66, MS IR36
828		Trees, S.C. and J.N. Rutger	Inheritance of four genetic male steriles in rice.	J. Hered.	69	270-272.	1978		
829		Virmani, S.S., R.V. Kumar and C. Casal	Cytoplasmic diversity among CMS lines of rice.	RGN	6	127-129.	1989	[CMS-ARC],[CMS-GAM],[CMS-SP]	[cms-ARC]*, [cms-ARC] [mt], [cms-ARC],[cms-GAM]*, [cms-GAM],[cms-sp]*, [cms-sp]
830		Wang, B., W.W. Xu, J.Z. Wang, W. Wu, H.G. Zheng, Z.Y. Yang, J.D. Ray and H.T. Nguyen	Tagging and mapping the thermo-sensitive genic male-sterile gene in rice (Oryza sativa.L.) with molecular markers.	Theor. Appl. Genet.	91	1111-1114.	1995		
833		Ahn, S.N., Y.K. Kim, S.S. Han, H.C. Choi, H.P. Moon and S.R. McCouch	Molecular mapping of a gene for resistance to a Korean isolate of rice blast.	RGN	13	74-76.	1996	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
834		Aida, T., S. Niikura and I. Takamure	Genetic interactions between mutant genes concerned with spikelet morphogenesis in rice.	Breeding Science	47(Suppl. 1)	49	1997	LHS1,DP2	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,dp2
835	8983188	Akagi, H., Y. Yokozeki, A. Inagaki, A. Nakamura and T. Fujimura	A codominant DNA marker closely linked to the rice nuclear restorer gene, Rf-1, identified with inter-SSR fingerprinting.	Genome	39	1205-1209.	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
836		Akagi, H., Y. Yokozeki, A. Inagaki and T. Fujimura	Microsatellite DNA markers for rice chromosomes.	Theor. Appl. Genet.	93	1071-1077.	1996		
837		Antonio, B.A., T. Inoue, H. Kajiya, Y. Nagamura, N. Kurata, Y. Minobe, M. Yano, M. Nakagahra and T. Sasaki	Comparison of genetic distance and order of DNA markers in five populations of rice.	Genome	39	946-956.	1996		
838		Antonio, B.A., A. Shomura, T. Shimano, Y. Kuboki, S.Y. Lin, T. Inoue, H. Kajiya, Y. Harushima, K. Yamamoto, Y. Nagamura, N. Kurata, M. Yano, Y. Minobe and T. Sasaki	High-density linkage map of rice with expressed sequence tags.	Rice Genetics III. IRRI, Manila, Philippines.		31-46.	1996		
839		Ashikari, M., O. Ideta, A. Yoshimura and N. Iwata	Fine map of d-1 gene in rice.	RGN	13	76-78.	1996	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
840		Ashikawa, I., Y. Umehara, H. Tanoue, Z. Wang, S. Saji, T. Shimokawa, K. Yoshino, J. Wu, B. Antonio, K. Koike, W.Van Houten, A. Idonuma, E.  Emoto, N. Kurata and T. Sasaki	Construction of a first-generation physical map of the rice genome.	Rice Genetics III. IRRI, Manila, Philippines.		85-95.	1996	EG1	eg1, GY1
841		Babu, R.C., H.G. Zheng, M.S. Pathan, M.L. Ali, A. Blum and H.T. Nguyen	Molecular mapping of drought resistance traits in rice.	Rice Genetics III. IRRI, Manila, Philippines.		637-642.	1996		
842		Bi, X.Z., Y.C. Song, N. Ren and L.H. Liu	Physical mapping of CaM and  Ca2+-ATPase genes in rice by in situ hybridization.	RGN	13	85-89.	1996	ATP,CALA	ATP*(atp1), ATPX, atp1,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1
843		Blair, M.W. and S.R. McCouch	Development of diagnostic markers for the bacterial blight resistance gene, xa5.	Rice Genetics III. IRRI, Manila, Philippines.		582-589.	1996	XA5,XA21	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa21*, Xa21, OsXA21
844		Cheng, R., A. Saito, Y. Takano and Y. Ukai	Estimation of the position and effect of a lethal factor locus on a molecular marker linkage map.	Theor. Appl. Genet.	93	494-502.	1996	L	L*
845	8984005	Cho, Y.G., M.W. Blair, O. Panaud and S.R. McCouch	Cloning and mapping of variety-specific rice genomic DNA sequences amplified fragment length polymorphisms (AFLP) from silver-stained polyacrylamide gels.	Genome	39	373-378.	1996		
846		Cho, Y.G., M.W. Blair, O. Panaud and S.R. McCouch	Cloning and mapping of amplified fragment length polymorphisms (AFLPs) in rice from silver-stained polyacrylamide gels.	RGN	13	161-165.	1996		
847		Chung, M.C. and H.K. Wu	Cytological identification of the chromosomes involved in Nishimura's rice translocation lines.	Theor. Appl. Genet.	88	956-964.	1994		
848		Dung, L.V. and Y. Sano	Dissection of a gene complex responsible for photoperiod sensitivity.	RGN	13	72-74.	1996	SEPAT	se-pat(t), sepat(t)*(se), sepat(t)*
849		Endo, N., T. Ogawa and G.S. Khush	Isozyme classification of Myanmar rice cultivars resistant to bacterial blight.	Breeding Science	47	27-32.	1997	AMP1,XA10,XA4,XA5,XA3	Amp1(Lap1,LapF), LapF, Lap1, Amp1,Xa10, Xa-10,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
850		Fujii, K., Y. Hayano-Saito, A. Shumiya, T. Izawa and M. Iwasaki	Inheritance of Pb-st (t), a panicle blast resistance gene and detection of RFLP markers which link to Pb-st (t).	Breeding Science	47(Suppl. 1)	38	1997	PBST*	Pbst*
851		Fukui, K.	Advances in rice chromosome research,  1990-95.	Rice Genetics III. IRRI, Manila, Philippines.		117-130.	1996		
852		Fukui, K.	Current status in rice chromosome research.	RGN	13	27-35.	1996		
853		Fukuoka, S., K. Okuno and H. Namai	Linkage analysis of the genes controlling hybrid breakdown in cultivated rice.	Breeding Science	47(Suppl. 1)	32	1997	HWD2,HWD1	hwd2,hwd1
854		Fukuta, Y.	RFLP mapping of a shattering-resistance gene in the mutant line, SR-1 induced from an indica rice variety, Nan-jing 11.	Breeding Science	45	15-19.	1995	SD1,SH2	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,sh2
855		Fukuta, Y., Y. Harushima and M. Yano	Using quantitative trait locus analysis for studying genetic regulation of shattering.	Rice Genetics III. IRRI, Manila, Philippines.		657-662.	1996		
856		Gale, M.D., K.M. Devos and G. Moore	Rice as the pivotal genome in the new era of grass comparative genetics.	Rice Genetics III. IRRI, Manila, Philippines.		77-84.	1996		
857	1356266	Gustafson, J.P. and J.E. Dille	Chromosomal location of Oryza sativa recombination linkage groups.	Proc. Natl. Acad. Sci. U.S.A.	89	8646-8650.	1992		
858		Hamada, M., K. Yamamoto, T. Sasaki and T. Hino	cDNA sequence of a novel rice serine/threonine protein kinase.	RGN	13	154-157.	1996		
859		Harata, Y., Y. Tuchimine and R. Ishikawa	Genetic characterization of Japanese upland rice and gene block on chromosome 11 Chromosomal polymorphic region (CPR).	RGN	13	44-46.	1996	PGD1	Pgd1, 6Pgd1
860		Harrington, S.E., H.F.J. Bligh, W.D. Park, C.A. Jones and S.R. McCouch	Linkage mapping of starch branching enzyme III in rice (Oryza sativa L.) and prediction of location of orthologous genes in other grasses.	Theor. Appl. Genet.	94	564-568.	1997	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
861		Harushima, Y., N. Kurata, M. Yano, Y. Nagamura, T. Sasaki, Y. Minobe and M. Nakagahra	Detection of segregation distortions in an indica-japonica rice cross using a high-resolution molecular map.	Theor. Appl. Genet.	92	145-150.	1996		
862		Hirano, H-Y., M. Eiguchi and Y. Sano	A point mutation, G to T, causes the differentiation of the Wxb allele from Wxa allele, which is specific to Japonica rice.	RGN	13	148-149.	1996	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
863		Hirabayashi, H. and T. Ogawa	RFLP mapping of brown planthopper resistance gene Bph-1 in rice.	IRRN	21(2-3)	54-55.	1996		
864		Ichii, M. and M. Ishikawa	Genetic analysis of newly induced short-root mutants in rice (Oryza sativa L. ).	Breeding Science	47	121-125.	1997	SRT1	srt1*, srt1
865		Ichii M. and Z.W. Liang	Morphological characteristics and its inheritance of a short-root mutant RM10 in rice.	Breeding Science	47(Suppl. 1)	310	1997	SRT4	srt4*, srt4
866		Ichitani, K., T. Tanaka, Y. Okumoto and T. Tanisaka	Gene analysis of the rice cultivar Kasalath with special reference to two photoperiod sensitivity loci, E1 and Se-1.	Breeding Science	47(Suppl. 1)	51	1997	SE1,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
867		Ichitani, K., Y. Okumoto and T. Tanisaka	Photoperiod sensitivity gene of Se-1 locus found in photoperiod insensitive rice cultivars of the northern limit region of rice cultivation.	Breeding Science	47	145-152.	1997	SE1,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
868		Ideta, O., A. Yoshimura and N. Iwata	An integrated linkage map of rice.	Rice Genetics III. IRRI, Manila, Philippines.		47-56.	1996		
869		Iida, S., M. Kusaba and T. Nishio	Mutants lacking glutelin subunits in rice mapping and combination of mutated glutelin genes.	Theor. Appl. Genet.	94	177-183.	1997	GLU3,GLU2,LGC1	glu3(t)*, glu10, LGLU3,glu2(t)*, glu9, LGLU2,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
870		Iijima, K., K. Kakeda and K, Fukui	Identification and characterization of somatic rice chromosomes by imaging methods.	Theor. Appl. Genet.	81	597-605.	1991		
871		Ikehashi, H. and J. Wan	Differentiation of alleles at seven loci for hybrid sterility in cultivated rice (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		404-408.	1996	S7,S16,S8,S9,S15,S5	S7,,,,S15(S10), S10,S5-3, S5-4
872		Inukai, T. and A. Sako	Determination of chromosomal location of blast resistance gene in West African upland cultivar Moroberekan.	Breeding Science	47(Suppl. 1)	268	1997	PI5	Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2
873		Inukai, T., R.J. Nelson, R.S. Zeigler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure and T. Kinoshita	Genetic analysis of blast resistance in tropical rice cultivars using near-isogenic lines.	Rice Genetics III. IRRI, Manila, Philippines.		447-450.	1996	PIZ,PI1,PI12,PI3,PI5,PI7,PIZ5,PITA	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi7, Pi-7(t), Pi7(t),Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
874		Ishikawa, R. and M. Freeling	Putative transposase-like domain found in rice genome.	RGN	13	146-147.	1996		
875		Itadani, H., K. Yamamoto and T. Sasaki	Partial sequences of rice cDNAs putatively identified as encoding protein kinases.	RGN	13	150-154.	1996		
876		Itoh, K. and K. Shimamoto	Gene silencing at the waxy gene of rice.	Breeding Science	47(Suppl. 1)	113	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
877		Itoh, J., H. Kitano and Y. Nagato	Genes affecting shoot apical meristem and leaf primordia differentiation.	RGN	13	100-102.	1996	SHO2,SHO1	sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
878		Itoh, J., H. Kitano and Y. Nagato	Developmental genetics of shoot organization. -Mutation affecting plastochron and panicle differentiation.-	Breeding Science	47(Suppl. 1)	314	1997		
879		Kaji, R. and T. Ogawa	RFLP mapping of blast resistance gene Pi-km in rice.	IRRN	21(2-3)	47	1996	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
880		Kaji, R., T. Ogawa and M. Nishimura	RFLP mapping of a blast resistance gene, Pi-t, in rice.	Breeding Science	47(Suppl. 1)	37	1997	PISH,PIT	Pi sh, Pish, Pi-sh, Pish(t),Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
881		Kajiya, H., T. Shimano, L. Monna, M. Yano and T. Sasaki	Effective production of RFLP markers between closely related varieties of rice by genomic subtraction.	Breeding Science	46	387-391.	1996		
882		Kamijima, O., T. Tanisaka and T. Kinoshita	Gene symbols for dwarfness.	RGN	13	19-25.	1996	SD1,D59,SD8,SD7,SDG,D58,D60	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,d59(t), dwf40, d59,sd8(t), sd8,sd7, sd7(t),sdg*, sd11,d58, dwf39,d60 (sd(t)), sd(t), dwf41, d60
883	8156157	Kamisugi, Y., N. Furuya, K, Iijima and K. Fukui	Computer-aided automatic identification of rice chromosomes by image parameters.	Chromosome Res.	1	189-196.	1993		
884		Katsuta-seki, M., K. Ebana and K. Okuno	QTL analysis for mesocotyl elongation in rice.	RGN	13	126-127.	1996		
885		Kawasaki, S., K. Rybka, M. Miyamoto, Y. Tanaka, M. Kataoka, A. Saito and I. Ando	Positional cloning of rice blast resistance genes.	Rice Genetics III. IRRI, Manila, Philippines.		675-680.	1996	PIB,PITA	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
886		Kawasaki, S., S. Nakamura, T. Suzuki, I. Wisniewska, N. Sasaki, H. Seki and K. Shinozaki	Delineation of rice blast resistance gene Pi-b region on a BAC contig spanning flanking markers and a trial of cDNA search within the region.	Breeding Science	47(Suppl. 1)	36	1997	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
887		Khush, G.S., K. Singh, T. Ishii, A. Parco, N. Huang, D.S. Brar and D.S. Multani	Centromere mapping and orientation of the cytological, classical and molecular linkage maps of rice.	Rice Genetics III. IRRI, Manila, Philippines.		57-75.	1996		
888	7651834	Kilian, A., D.A. Kudrna, A. Kleinhofs, M. Yano, N. Kurata, B. Steffenson and T. Sasaki	Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region.	Nucleic Acids Res.	23	2729-2733.	1995		
889		Kobayashi, S. and Y. Sano	Three genes involved in the unidirectional cross-incompatibility system observed in a sativa-rufipogon hybrid.	RGN	13	119-121.	1996	CIM,CIF1,SUCIF	cinm*, CINM, cim, cinm,Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,SuCinf*, SUCINF, Su-Cif, Su Cinf
890		Kushalappa, K., M.B. Suresh Kumar, L. Patwardhan and U. Vijayraghavan	Isolation and characterization of genes that control inflorescence.	Rice Genetics III. IRRI, Manila, Philippines.		888-893.	1996	MP1,MP2	mp1,mp2
891		Li, Z., S.R.M. Pinson, J.W. Stansel and W.D. Park	Identification of quantitative trait loci (QTLs) for heading date and plant height in cultivated rice (Oryza sativa L.).	Theor. Appl. Genet.	91	374-381.	1995		
892		Li, Z., S.R.M. Pinson, M.A. Marchetti, J.W. Stansel and W.D. Park	Characterization of quantitative trait loci (QTLs) in cultivated rice contributing to field resistance to sheath blight (Rhizoctonia solani).	Theor. Appl. Genet.	91	382-388.	1995		
893		Li, Z., S.R.M. Pinson, A.H. Paterson, W.D. Park and J.W. Stansel	Genetics of hybrid sterility and hybrid breakdown in an interspecific rice   (Oryza sativa L.) population.	Rice Genetics III. IRRI, Manila, Philippines.		409-417.	1996		
894		Li, Z., S.R.M. Pinson, W.D. Park, A.H. Paterson and J.W. Stansel	Mapping quantitative trait loci and quantitative-trait-modifying factors affecting three grain yield components in rice (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		624-630.	1996		
895	9093864	Li, Z., S.R.M. Pinson, A.H. Paterson, W.D. Park and J.W. Stansel	Genetics of hybrid sterility and hybrid breakdown in an interspecific rice (Oryza sativa L.) population.	Genetics	145	1139-1148.	1997		
896		Lin, H.-X., H.-R. Qian, J.-Y. Zhuang, J. Lu, S.-K. Min, Z.-M. Xiong, N. Huang and K.-L. Zheng	Interval mapping of QTLs for yield and other related characters in rice.	RGN	12	251-253.	1995		
897	0	Lin, H.-X., H.-R. Qian, J.-Y. Zhuang, J. Lu, Z.-M. Xiong, S.-K. Min, N. Huang and K.-L. Zheng	RFLP mapping of major genes and minor genes for heading date in rice.	RGN	12	253-255.	1995		
898		Lin, H.-X., H.-R. Qian, J.-Y. Zhuang, J. Lu, S.-K. Min, Z.-M. Xiong, N. Huang and K.-L. Zheng	RFLP mapping of QTLs for yield and related characters in rice (Oryza sativa L.).	Theor. Appl. Genet.	92	920-927.	1996		
899		Lu, C., L. Shen, Z. Tan, Y. Xu, P. He, Y. Chen and L. Zhu	Comparative mapping of QTLs for agronomic traits of rice across environments using a doubled haploid population.	Theor. Appl. Genet.	93	1211-1217.	1996		
900		Lu, C., L. Shen, Z. Tan, Y. Xu, P. He, Y. Chen and L. Zhu	Comparative mapping of QTLs for agronomic traits of rice across environments by using a doubled-haploid population.	Theor. Appl. Genet.	94	145-150.	1997		
901		Mackill, D.J. and K. Xu	Genetics of seedling-stage submergence tolerance in rice.	Rice Genetics III. IRRI, Manila, Philippines.		607-612.	1996	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
902		Mackill, D. J., Z. Zhang and E. D. Redona	Comparison  of AFLP, microsatellite and RAPD marker polymorphism in rice.	RGN	12	245-248.	1995		
903	8890522	Mackill, D. J., Z. Zhang, E. D. Redona and P. M. Colowit	Level of polymorphism and genetic mapping of AFLP markers in rice.	Genome	39	969-977.	1996		
904		Maekawa, M.	Recent information on anthocyanin pigmentation.	RGN	13	25-26.	1996	PL,IPL6	Pl, Pl1,IPl6
905		Maekawa, M.	Identifying cold tolerance gene(s) in rice at the booting stage.	Rice Genetics III. IRRI, Manila, Philippines.		428-433.	1996		
906		Maekawa, M., T. Ohmori, W. Sakamoto, F. Motoyoshi, C. Miyazaki, A. Saito, K. Rikiishi, H. Kawaguchi, T. Matsuura and K. Noda	Mapping of Ra-homologous cDNA isolated from PlW type purple rice.	Breeding Science	47(Suppl. 1)	48	1997	PL	Pl, Pl1
907		Maekawa, M., T. Kumagai and T. Sato	Ultraviolet-B-responsive anthocyanin production and growth response on near-isogenic lines of Pl alleles in rice plant.	Breeding Science	47(Suppl. 1)	311	1997	PL	Pl, Pl1
908		Maheswaran, M., P.K. Subudhi, S. Nandi, J.C. Xu, A. Parco, D.C. Yang and N. Huang	Polymorphism, distribution and segregation of AFLP markers in a doubled haploid rice population.	Theor. Appl. Genet.	94	39-45.	1997		
909		Malik, S.S. and G.S. Khush	A simplified procedure for classification of rice (Oryza sativa) germplasm based on single isozyme locus.	RGN	13	42-43.	1996	CAT1	Cat1, Cat_1
910		Malik, S.S. and G.S. Khush	Identification of wide compatibility varieties (WCV's) and tagging of WC gene with isozyme markers.	RGN	13	121-124.	1996	AMP3,EST2,S5	Amp3(Amp1), Amp_3, Amp-3, Amp3, Amp1,Est2, Est_2,S5-3, S5-4
911		McCouch, S., O. Panaud, X. Chen and Y. Xu	Development of microsatellite markers and characterization of simple sequence length polymorphism in rice  (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		549-559.	1996		
912		Mei, M., C. Zhuang, R. Wang, J. Wu, W. Hu and G. Kochert	Genetic analysis and tagging of gene for brown planthopper resistance in indica rice.	Rice Genetics III. IRRI, Manila, Philippines.		590-595.	1996	BPH	Bph(t)*, Bph11
913		Mikami, I., H. Nagano, M. Eiguchi, H.-Y. Hirano and Y. Sano	Genetic characterization of opaque endosperms.	RGN	13	134-136.	1996	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
914		Mikami, I., H. Nagano, H. Hirano and Y. Sano	Tissue specific expression of opaque endosperm (WxOP) mutants in rice.	Breeding Science	47(Suppl. 1)	308	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
915		Miyao, A., K. Yamamoto, C. Hamamatsu, H. Itadani, Y. Koga-Ban, K. Koike, S. Kojima, H. Nagasaki, T. Shimizu, Y. Shinozuka, J. Song, U. Yamanouchi, M. Yoshikawa, L. Monna, H. Sun Zhong, H. Ichimura and T. Sasaki	Application of cDNA sequence information for characterization of the rice genome.	Rice Genetics III. IRRI, Manila, Philippines.		97-104.	1996		
916		Monna, L., A. Miyao, H.S. Zhong, M. Yano, M. Iwamoto, Y. Umehara, N. Kurata, H. Hayasaka and T. Sasaki	Saturation mapping with subclones of YACs DNA marker production targeting the rice blast disease resistance gene, Pi-b.	Theor. Appl. Genet.	94	170-176.	1997	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
917	7583118	Moore, G., K.M. Devos, Z. Wang and M.D. Gale	Grasses, line up and form a circle.	Curr. Biol.	5	737-739.	1995		
918	7732576	Moore, G., T. Foote, T. Helentjaris, K. Devos, N. Kurata and M. Gale	Was there a single ancestral cereal chromosome?	Trends Genet.	11(3)	81-82.	1995		
919		Nagamura, Y., T. Inoue, B.A. Antonio, T. Shimano, H. Kajiya, A. Shomura,     S. Y. Lin, Y. Kuboki, Y. Harushima, N. Kurata, Y. Minobe, M. Yano and T. Sasaki	Conservation of duplicated segments between rice chromosomes 11 and 12.	Breeding Science	45	373-376.	1995		
920		Nagasawa, N., M. Miyoshi., Y. Sano and Y. Nagato	DL regulates both leaf and pistil development in rice.	RGN	13	102-105.	1996	DL	DL, dl(lop), lop, dl, dl1
921		Nagasawa, N., M. Miyoshi and Y. Nagato	Mutations affecting flower organization in rice.	Breeding Science	47(Suppl. 1)	313	1997	FOR1	for1*, for1
922		Nair, S., A. Kumar, M.N. Srivastava and M. Mohan	PCR-based DNA markers linked to a gall midge resistance gene, Gm4t, has potential for marker-aided selection in rice.	Theor. Appl. Genet.	92	660-665.	1996	GM4	Gm4(t)*, Gm4(t), Gm4, Gm4t
923		Nakamura, I., N. Kameya and H. Kanzaki	Tnr1-like element in the first intron of a type 2 metallothionein-like gene showing root specific expression in rice.	RGN	13	157-161.	1996		
924		Nakazaki, T. and H. Ikehashi	Isolation and analysis of a new chitinase gene Chi-4(t) in rice.	Breeding Science	47(Suppl. 1)	272	1997	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3
925		Naqvi, N.I., J.M. Bonman, D.J. Mackill, R.J. Nelson and B.B. Chattoo	Identification of RAPD markers linked to a major blast resistance gene in rice.	Molecular Breeding	1	341-348.	1995	PI10	Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)
926	8851795	Naqvi, N.I. and B.B. Chattoo	Development of a sequence characterized amplified region (SCAR) based indirect selection method for a dominant blast-resistance gene in rice.	Genome	39	26-30.	1996	PI10	Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)
927		Naqvi, N.I. and B.B. Chattoo	Molecular genetic analysis and sequence characterized amplified region-assisted selection of blast resistance in rice.	Rice Genetics III. IRRI, Manila, Philippines.		570-576.	1996	PI157,PI10	Pi157*, Pi157(t)*, Pi-157, Pi157,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t)
928		Nelson, R.J., E. Ardales, M. Baraoidan, I. Yap, M.L.C. George, D.H. Chen, M. Finckh, A. Bordeos, C.M. Vera Cruz, T. Adhikari, C.C. Mundt, M. Bustamam, W. Cruz, H. Leung, N. Huang, A. Yoshimura, S. McCouch, T.W. Mew and J.E. Leach	Exploring the application of molecular markers for improving resistance to bacterial blight.	Rice Genetics III. IRRI, Manila, Philippines.		267-277.	1996	XA21,XA10,XA5,XA4,XA7	Xa21*, Xa21, OsXA21,Xa10, Xa-10,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa7
929		Nonomura, K.I., A. Yoshimura and N. Iwata	Cytogenetical gene mapping by reciprocal translocation and tertiary trisomic analyses in rice (Oryza sativa L.).	Genes Genet. Syst.	72	41-49.	1997		
930		Ogawa, T.	Monitoring race distribution and identification of genes for resistance to bacterial leaf blight.	Rice Genetics III. IRRI, Manila, Philippines.		456-459.	1996	XA5,XA10,XA4,XA3	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa10, Xa-10,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
931		Ohmido, N.	Rice chromosomes studies by fluorescence in situ hybridization with special reference to physical mapping and chromosome structure.	J. Fac. Agr. Hokkaido Univ.	66	277-320.	1995	R45S3	R45s3*, R45s3
932		Ohmido, N. and K. Fukui	Cytological studies of African cultivated rice, Oryza glaberrima.	Theor. Appl. Genet.	91	212-217.	1995		
933		Ohmido, N. and K. Fukui	A new manual for fluorescence in situ hybridization (FISH) in plant chromosomes.	RGN	13	89-93.	1996		
934		Ohmido, N., H. Ohtsubo, E. Ohtsubo and K. Fukui	Physical mapping of several genes in rice using fluorescent in situ hybridization.	Rice Genetics III. IRRI, Manila, Philippines.		467-470.	1996		
935		Ohtsuka, R., M. Yoshii, Y. Takemoto, H. Satoh and M. Ogawa	Intracellular distribution of 57kDa polypeptides in 57H mutants of rice (Oryza sativa L. ).	Breeding Science	47(Suppl. 1)	312	1997	GLUP1,GLUP2,ESP2,GLUP3,GLUP4	Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,glup2(esp6, gup2), esp6, gup2, glup2,esp2(rsp2), rsp2, esp2, PDIL1-1,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a
936		Okumoto, Y., H. Inoue, K. Ichitani and T. Tanisaka	Effects of three genes that control heading date (Se1, E1 and Ef1) in four varietal groups of japonica rice.	Rice Genetics III. IRRI, Manila, Philippines.		423-427.	1996	EF1,E2,SE1,E3,E1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
937		Okumoto, Y., K. Ichitani, H. Inoue and T. Tanisaka	Location of the late heading-time gene locus E3.	Breeding Science	47(Suppl. 1)	31	1997	E3	
938		Pan, Q.H., T. Tanisaka and H. Ikehashi	Studies on the genetics and breeding of blast resistance in rice VII. Gene analysis for the blast resistance of Indian native cultivar, Aus 373.	Breeding Science	47(Suppl. 1)	35	1997	PI16,PI17	Pi16(t), Pi16, Pi-16(t),Pi17(t), Pi17, Pi-17(t)
939	8654913	Panaud, O., X. Chen and S.R. McCouch	Frequency of microsatellite sequences in rice (Oryza sativa L. ).	Genome	38	1170-1176.	1995		
940		Peng, Y.L., Y. Qin, Y. Yang and J. Huang	Isolation and characterization of lipoxygenases from rice induced by incompatible infection of rice blast fungus, Magnaporthe grisea.	Rice Genetics III. IRRI, Manila, Philippines.		835-841.	1996	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
941		Ray, J.D., L. Yu, S.R. McCouch, M.C. Champoux, C. Wang and H.T. Nguyen	Mapping quantitative trait loci associated with root penetration ability in rice (Oryza sativa L.).	Theor. Appl. Genet.	92	627-636.	1996		
942		Reddy, A.R.	Genetic and molecular analysis of the anthocyanin pigmentation pathway in rice.	Rice Genetics III. IRRI, Manila, Philippines.		341-352.	1996	ILB,CHS,PL	Ilb*, Ilb,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,Pl, Pl1
943		Reddy, A. R., B. Scheffler, M. N. Srivastava, K. Arvind, R. V. Satyanarayan, N. Suresh, and M. Madan	Chalcone synthase (CHS) gene in rice (Oryza sativa L.): expression and molecular mapping	Plant Genome IV, San Diego, California, USA		57	1996	CHS	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26
944		Redona, E.D. and D.J. Mackill	Mapping quantitative trait loci for seedling vigor in rice using RFLPs.	Theor. Appl. Genet.	92	395-402.	1996		
945		Redona, E.D. and D.J. Mackill	Molecular mapping of quantitative trait loci in japonica rice.	Genome	39	395-403.	1996		
946		Robeniol, J.A., S.V. Constantino, A.P. Resurreccion, C.P. Villareal, B. Ghareyazie, B.-R. Lu, S.K. Katiyar, C.A. Menguito, E.R. Angeles, H.-Y. Fu, S. Reddy, W. Park, S.R. McCouch, G.S. Khush and J. Bennett	Sequence-tagged sites and low-cost DNA markers for rice.	Rice Genetics III. IRRI, Manila, Philippines.		293-306.	1996		
947		Ronald, P., W.-Y. Song, G.-L. Wang, L.-L. Chen, H.-S. Kim, L.-Y. Pi, T. Holsten, B. Wang, C. Williams, W.-X. Zhai, L.-H. Zhu and C. Fauquet	The rice disease resistance gene, Xa21, encodes a receptor kinase-like protein.	Rice Genetics III. IRRI, Manila, Philippines.		247-253.	1996	XA21	Xa21*, Xa21, OsXA21
948		Saghai Maroof, M.A., G.P. Yang, R.M. Biyashev, P.J. Maughan and Q. Zhang	Analysis of the barley and rice genomes by comparative RFLP linkage mapping.	Theor. Appl. Genet.	92	541-551.	1996		
949		Saito, K., K. Miura, K. Nagano, Y. Hayano-Saito, A. Saito, H. Araki and A. Kato	Chromosomal location of quantitative trait loci for cool tolerance at the booting stage in rice variety 'Norin-PL8'.	Breeding Science	45	337-340.	1995		
950		Saka, N., T. Toyama, T. Tuji, H. Nakamae and T. Izawa	Green ricehopper resistant gene Grh-3(t) and screening of Grh-3(t) among green ricehopper resistant and green leafhopper resistant cultivars in rice.	Breeding Science	47(Suppl. 1)	55	1997	GRH3	Grh3*, Grh3, Grh3(t)
951		Sano, Y. and S. Kobayashi	Genetic dissection of crossability in rice.	Rice Genetics III. IRRI, Manila, Philippines.		381-385.	1996	CIF1	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
952		Sato, H., A. Ishizaka, K. Nagao and M. Ichii	A new locus, cnx 3 involved in molybdenum cofactor biosynthetic pathway in rice.	Breeding Science	47(Suppl. 1)	212	1997	CNX1,CNX2,CNX3	cnx1*, cnx1, cnx 1,cnx2*, cnx2, cnx 2,cnx3*, cnx3, cnx 3
953		Sato, S., M. Yoshigi, M. Shimono and C. Shinjyo	Effect of temperature during fertilization on an action of a gametophytic gene on Chromosome 8 in rice.	Breeding Science	47(Suppl. 1)	52	1997	GAX	gax*, gax, ga-x, ga15
954		Sawamura, N. and Y. Sano	Chromosomal location of gamete eliminator, S11(t), found in an Indica-Japonica hybrid.	RGN	13	70-71.	1996	S11	S11(t)
955		Sebastian, L.S., R. Ikeda, N. Huang, T. Imbe, W.R. Coffman, M. Yano, T. Sasaki and S.R. McCouch	Genetic mapping of resistance to rice tungro spherical virus (RTSV) and green leafhopper (GLH) in ARC11554.	Rice Genetics III. IRRI, Manila, Philippines.		560-564.	1996	GLH,TSV1	Glh(t)*, Glh, Glh14,tsv1(RTSV), RTSV, tsv1
956		Shen, Y., Z. Guan, H. Qiang, J. Lu, K. Zheng and X. Wang	Identification of RAPD markers linked to fertility restoring gene of rice cytoplasmic male sterile line.	RGN	13	115-117.	1996	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
957		Shi, C.H., J. Zhu, R.C. Zang and G.L. Chen	Genotype x environment interaction effects and heterosis analysis for cooking quality traits of indica rice.	RGN	13	130-132.	1996		
958		Shimizu, A., J. Wan and H. Ikehashi	Genetic markers for tolerance to iron toxicity in rice.	RGN	13	132-134.	1996	EST2,EST1	Est2, Est_2,Est1
959		Shishido, R., Y. Sano and K. Fukui	The third 45S rDNA locus in O. eichingeri (CC) newly detected by an improved FISH method.	RGN	13	84-85.	1996	R45S4,R45S3	R45s4*, R45s4,R45s3*, R45s3
960	8650237	Singh, K., T. Ishii, A. Parco, N. Huang, D.S. Brar and G.S. Khush	Centromere mapping and orientation of the molecular linkage map of rice (Oryza sativa L.).	Proc. Natl. Acad. Sci. U.S.A.	93	6163-6168.	1996		
961	8722800	Singh, K., D.S. Multani and G.S. Khush	Secondary trisomics and telotrisomics of rice Origin, characterization and use in determining the orientation of chromosome map.	Genetics	143	517-529.	1996		
962		Sobrizal, A. Yoshimura and N. Iwata	Allelic variation at the gametophyte gene (ga2) locus in rice (Oryza sativa L.).	Rice Genetics III. IRRI, Manila, Philippines.		391-395.	1996	GA2	ga2
963		Song, Y.C. and J.P. Gustafson	Physical mapping of the 5S rDNA gene complex in rice (Oryza sativa).	Genome	36	658-661.	1993		
964		Song, Y.C. and J.P. Gustafson	The physical location of fourteen RFLP markers in rice (Oryza sativa L.).	Theor. Appl. Genet.	90	113-119.	1995		
965		Srivastava, M.N., A. Kumar, S.K. Shrivastava and R.K. Sahu	A new gene for resistance to gallmidge in rice variety Abhaya.	RGN	10	79-80.	1993	GM4	Gm4(t)*, Gm4(t), Gm4, Gm4t
966		Subudhi, P.K., R.P. Borkakati, S.S. Virmani and N. Huang	Inheritance and molecular mapping of the thermosensitive genic male sterility gene in rice.	Rice Genetics III. IRRI, Manila, Philippines.		601-606.	1996	TMS3	tms3(t)*, ms82
967	18464818	Subudhi, P.K., R.P. Borkakati, S.S. Virmani and N. Huang	Molecular mapping of a thermosensitive genetic male sterility gene in rice using bulked segregant analysis.	Genome	40	188-194.	1997	TMS3	tms3(t)*, ms82
968		Suh, H.S., Y.I. Sato and H. Morishima	Genetic characterization of weedy rice (Oryza sativa L. ) based on morpho-physiology, isozymes and RAPD markers.	Theor. Appl. Genet.	94	316-321.	1997	EST10	Est10
969		Tabien, R.E, S.R.M. Pinson, M.A. Marchetti, Z. Li, W.D. Park, A.H. Paterson and J.W. Stansel	Blast resistance genes from Teqing and Lemont.	Rice Genetics III. IRRI, Manila, Philippines.		451-455.	1996	PIB1,PIQ2,PIQ3,PIQ4,PIQ1,PIB2	Pib1*, pib1*t, Pib1,Piq2*, Pitq2*, Pitq2,Piq3*, Pitq3*, Pitq3,Piq4*, Pitq4*, Pitq4,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pib2*, Pilm2, Pib2
970		Takahashi, M., N. Nagasawa and Y. Nagato	Mutations affecting panicle architecture in rice.	RGN	13	97-99.	1996	PAP1	pap1
971		Takamure, I. and T. Kinoshita	Genetic analysis of morphological mutations in rice spikelets.	Rice Genetics III. IRRI, Manila, Philippines.		387-390.	1996	LHS1,MIK,MLS3	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,mi k, mik, mi2,mls3
972		Takemoto, Y., M. Ogawa, T. Kumamaru, M.Y. Son and H. Satoh	Characterization of the protein bodies and the polypeptides in esp-2 mutant of rice.	RGN	13	106-110.	1996	GLUP3,GLUP1,GLUP2,ESP2	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,glup2(esp6, gup2), esp6, gup2, glup2,esp2(rsp2), rsp2, esp2, PDIL1-1
973		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps UHLER) resistance III. RFLP mapping of the resistant gene in Norin PL2.	Breeding Science	47(Suppl. 1)	54	1997	GRH1	Grh1
974		Tang, S.X., G.S. Khush and D.S. Brar	Identification of a null allele in traditional rice germplasm of Taiwan, China.	RGN	13	53-54.	1996	CAT1,EST9	Cat1, Cat_1,Est9 (Est c1), Est8, Estcl, Est c1, Est_9
975	9205840	Tanoue, H., T. Shimokawa, J. Wu, N. Sue, Y. Umehara, I Ashikawa, N. Kurata and T. Sasaki	Ordered YAC clone contigs assigned to rice chromosomes 3 and 11.	DNA Res.	4	133-140.	1997		
976		Taura, S., M. Asahiro and F. Shimotu	Reaction of F2 population from the cross of BJ1/IR24 to the Japanese bacterial blight pathogens.	Breeding Science	47(Suppl. 1)	269	1997	XA13,XA5	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
977		Teraishi, M., H. Hirochika, A. Shimizu, Y. Okumoto and T. Tanisaka	Studies on the utilization of a mutator induced in rice. 12. Construction of YAC contig including the mutable slender glume gene (slg) locus and identification of YAC clones localizing it.	Breeding Science	47(Suppl. 1)	53	1997	SLG	slg, Rurm1, Urm1
978		Tomita, M.	The gametic lethal gene gal activated only in the presence of the semidwarfing gene d60 in rice.	Rice Genetics III. IRRI, Manila, Philippines.		396-403.	1996	GAL	gal(lt), It-m, lt, gal
979		Tragoonrung, S., J.Q. Sheng and A. Vanavichit	Tagging an aromatic gene in lowland rice using bulk segregant analysis.	Rice Genetics III. IRRI, Manila, Philippines.		613-618.	1996	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
980		Tsai, K.H.	A gene, w-Ef-1(t), for weakening the effect of early-heading.	RGN	13	78-80.	1996	WEF1	wEfl
981		Tsunematsu, H., A. Yoshimura, Y. Harushima, Y. Nagamura, N. Kurata, M. Yano, T. Sasaki and N. Iwata	RFLP framework map using recombinant inbred lines in rice.	Breeding Science	46	279-284.	1996		
982		Tsunematsu, H., A. Yoshimura, M. Yano and N. Iwata	Quantitative trait locus analysis using recombinant inbred lines and restriction fragment length polymorphism markers in rice.	Rice Genetics III. IRRI, Manila, Philippines.		619-623.	1996		
983		Uemura, Y.J., H. Satoh, M. Ogawa, H. Suehisa, T.C. Katayama and A. Yoshimura	Chromosomal location of genes encoding glutelin polypeptides in rice.	Rice Genetics III. IRRI, Manila, Philippines.		471-476.	1996	GLU1,GLU2,GLU3,GLU4,GLU5,GLU6,GLU7	Glu1t*(Glu1), Glu1t*, Glu1t, Glu1, Glu12,Glu2t*(Glu2), Glu2t*, Glu2t, Glu2, Glu13,Glu3t*(Glu3), Glu3t*, Glu3t, Glu3, Glu14,,Glu4t*(Glu4), Glu4, Glu4t, Glu4t*, Glu15,Glu5t*(Glu5), Glu5, Glu5t, Glu5t*,Glu6t*(Glu6,GluB,C,E), GluE, GluB, Glu6t*, GluC, Glu6t, Glu6, Glu17,Glu7t*(Glu7,GluA), GluA, Glu7t, Glu7, Glu18
984		Umehara, Y., A. Inagaki, H. Tanoue, Y. Yasukochi, Y. Nagamura, S. Saji, Y. Otsuki, T. Fujimura, N. Kurata and Y. Minobe	Construction and characterization of a rice YAC library for physical mapping.	Molecular Breeding	1	79-89.	1995		
985	9205839	Umehara, Y., N. Kurata, I. Ashikawa and T. Sasaki	Yeast artificial chromosome clones of rice chromosome 2 ordered using DNA markers.	DNA Res.	4	127-131.	1997		
986		Uozu, S., D.S. Brar, G.S. Khush and K. Fukui	Survey of Oryza australiensis chromosomes in the backcross progeny of O.sativa x O. australiensis by FISH.	RGN	13	82-84.	1996		
987		Van Houten, W., N. Kurata, Y. Umehara, T. Sasaki and Y. Minobe	Generation of a YAC contig encompassing the extra glume gene, eg, in rice.	Genome	39	1072-1077.	1996	EG1	eg1, GY1
988		Wan, J. and H. Ikehashi	List of hybrid sterility gene loci (HSGLi) in cultivated rice (Oryza sativa L.).	RGN	13	110-114.	1996	S7,S16,S8,S9,S15,S17,S5	S7,,,,S15(S10), S10,S17(t)*,S5-3, S5-4
989		Wan, J., Y. Yamaguchi, H. Kato and H. Ikehashi	Two new loci for hybrid sterility in cultivated rice (Oryza sativa L.).	Theor. Appl. Genet.	92	183-190.	1996	S9,S15,EST1,MAL1	,S15(S10), S10,Est1,Mal1, Mal I, Mal-I, Mal-1
990		Wang, B., W.W. Xu, J.Z. Wang, M.L. Weng, M.Y. Li, R.C. Yang and H.T. Nguyen	Tagging and mapping the thermosensitive genic male-sterile gene of rice with molecular markers.	Rice Genetics III. IRRI, Manila, Philippines.		596-600.	1996	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
991		Wang, Z.X. and N. Iwata	Aneuhaploids and tetrasomics in rice (Oryza sativa L. ) derived from anther culture of trisomics.	Genome	38	696-705.	1995		
992		Wang, Z.X. and N. Iwata	Characterization of four induced chromosome deficiencies in rice (Oryza sativa L.).	Genome	39	307-313.	1996		
993		Wang, Z.X. and N. Iwata	The origin, identification and plant morphology of five rice monosomics.	Genome	39	528-534.	1996		
994		Wang, Z.X., N. Kurata, S. Saji, Y. Katayose and Y. Minobe	A chromosome 5-specific repetitive DNA sequence in rice (Oryza sativa L.).	Theor. Appl. Genet.	90	907-913.	1995		
995		Williams, C.E., B. Wang, T.E. Holsten, J. Scambray, F. de Assis Goes da Silva and P.C. Ronald	Markers for selection of the rice Xa21 disease resistance gene.	Theor. Appl. Genet.	93	1119-1122.	1996	XA21	Xa21*, Xa21, OsXA21
996	1860377	Wu, H.K., M.C. Chung, T. Wu, C.N. Ning and R. Wu	Localization of specific repetitive DNA sequences in individual rice chromosomes.	Chromosoma	100	330-338.	1991		
997		Wu, H.-K., T.-C. Chen and M.-C. Chung	Glutelin genes in rice species.	Rice Genetics III. IRRI, Manila, Philippines.		877-883.	1996	GLUA3,GLUA1,GLUA2	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
998	8654915	Wu, J., E. Matsui, K. Yamamoto, Y. Nagamura, N. Kurata, T. Sasaki and Y. Minobe	Genomic organization of 57 ribosomal protein genes in rice   (Oryza sativa L.) through RFLP mapping.	Genome	38	1189-1200.	1995		
999		Wu, K.S., C. Martinez, Z. Lentini, J. Tohme, F.G. Chumley, P.A. Scolnik and B. Valent	Cloning a blast resistance gene by chromosome walking.	Rice Genetics III. IRRI, Manila, Philippines.		669-674.	1996	PI62,PI67	Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi67(t)*, Pi67, Pi67(t)
1000		Wu, L.H., H. Nagano, S. Kawasaki, Y. Kishima and Y. Sano	Molecular genetic analysis in the vicinity of rice wx locus using BAC library toward the isolation of a gamate eliminator gene S10.	Breeding Science	47(Suppl. 1)	77	1997	S10	
1001		Wu, X., K. Hattori, K. Takeda and H. Kitano	Genetic analysis and gene interaction in rice dm-type mutants showing a pseudo-normal plant type.	Breeding Science	47(Suppl. 1)	210	1997	SSI1,SSI2	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1,ssi2*, ssi2
1002		Xiao, J., J. Li, L. Yuan, S.R. McCouch and S.D. Tanksley	Genetic diversity and its relationship to hybrid performance and heterosis in rice as revealed by PCR-based markers.	Theor. Appl. Genet.	92	637-643.	1996		
1003		Xiao, J., J. Li, L. Yuan and S.D. Tanksley	Dominance as the major genetic basis of heterosis in rice.	Rice Genetics III. IRRI, Manila, Philippines.		327-340.	1996		
1004		Xiao, J., J. Li, L. Yuan and S.D. Tanksley	Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross.	Theor. Appl. Genet.	92	230-244.	1996		
1005		Xie, Q.J., J.H. Oard and M.C. Rush	Genetic analysis of an unstable, purple-red hull rice mutation derived from tissue culture.	J. Hered.	86(2)	154-156.	1995	PR	Pr(Rp), Rp, Pr
1006		Yadav, R., B. Courtois and N. Huang	RFLP mapping of genes controlling root morphology in an indica/japonica doubled haploid population.	Rice Genetics III. IRRI, Manila, Philippines.		643-649.	1996		
1007		Yadav, R., B. Courtois, N. Huang and G. McLaren	Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice.	Theor. Appl. Genet.	94	619-632.	1997		
1008		Yamagishi, M., M. Yano, Y. Fukuta, K. Fukui, M. Otani and T. Shimada	Distorted segregation of RFLP markers in regenerated plants derived from anther culture of an F1 hybrid of rice.	Genes Genet. Syst.	71	37-41.	1996		
1009		Yamamoto, T., T. Sasaki and M. Yano	Genetic analysis of spreading stub in rice.	Breeding Science	47(Suppl. 1)	41	1997	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
1010		Yamamoto, T., T. Sasaki and M. Yano	Genetic analysis of spreading stub using indica/japonica backcrossed progenies in rice.	Breeding Science	47	141-144.	1997	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
1011		Yamamoto, T., A. Nishikawa, Y. Nakajima, K. Oeda and H. Hirohara	Genetic and morphological studies on glabrousness of a somaclonal variant induced by anther culture in rice (Oryza sativa L.).	Breeding Science	47	1-6.	1997	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3
1012		Yano, M. and Y. Harushima	Genetic dissection of quantitative traits in rice using molecular markers.	Recent Advances in Breeding	36	29-32.	1994		
1013		Yano, M., H. Yoshiaki, Y. Kuboki, S.Y. Lin, Y. Nagamura, N. Kurata, T. Sasaki and Y. Minobe	QTL analysis as an aid to tagging genes that control heading time in rice.	Rice Genetics III. IRRI, Manila, Philippines.		650-656.	1996		
1014		Yasuda, T., Y. Okumoto and H. Ikehashi	Analysis of complementary loci for delayed flowering in F1 hybrid of Indica-Japonica crosses II. Identification of a complementary locus for Se-1.	Breeding Science	47 (Suppl. 1)	40	1997	SE1,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
1015		Yasui, H. and N. Iwata	Ditelosomic alien addition lines of rice (Oryza sativa L.) carrying a pair of telocentric chromosomes of O. punctata Kotschy.	RGN	13	80-82.	1996		
1016		Yoshimura, A., J.X. Lei, T. Matsumoto, H. Tsunematsu, S. Yoshimura, N. Iwata, M.R. Baraoidan, T.W. Mew and R.J. Nelson	Analysis and pyramiding of bacterial blight resistance genes in rice by using DNA markers.	Rice Genetics III. IRRI, Manila, Philippines.		577-581.	1996	XA3,XA11,XA5,XA10,XA4,XA7	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Xa11(Xa pt), Xa11, Xapt,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa10, Xa-10,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa7
1017		Zhang, G. and Y. Lu	Genetics of F1 pollen sterility in Oryza sativa.	Rice Genetics III. IRRI, Manila, Philippines.		418-422.	1996	SA,SD,SE,SF,SC,SB	Sa*, Hst16,Sd*, Hst19,Se*, Hst20,Sf*, Hst21,Sc*, Hst18,Sb*, Hst17, S24, F5-Du
1018		Zhang, G., Y. Lu and N. Huang	Molecular mapping of fertility-restoring gene Rf-3 in rice.	IRRN	21(2-3)	16-17.	1996	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
1019		Zhang, G., T.S. Bharaj, Y. Lu, S.S. Virmani and N. Huang	Mapping of the Rf-3 nuclear fertility-restoring gene for WA cytoplasmic male sterility in rice using RAPD and RFLP markers.	Theor. Appl. Genet.	94	27-33.	1997	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
1020		Zhang, L. and K. Hattori	Genetic analysis of regeneration ability in rice seed-callus.	Genes Genet. Syst.	71	313-317.	1996	SHD	Shd(t)*, Shd
1021		Zhang, Q, M.A. Saghai Maroof, G.P. Yang, K.D. Liu, Z.Q. Zhou, K.A. Gravois, C.G. Xu and Y.J. Gao	Relationships between molecular marker polymorphism and hybrid performance in rice.	Rice Genetics III. IRRI, Manila, Philippines.		317-325.	1996		
1022		Zhang, Y., I.H. Somantri, S. Tobita, T. Nagamine and T. Senboku	Variation of salt tolerance at germination in cultivated rice (Oryza sativa L. ) varieties.	SABRAO Journal	28(2)	15-23.	1996	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
1023		Zheng, K.L., J.Y. Zhuang, J. Lu, H.R. Qian and H.X. Lin	Identification of DNA markers tightly linked to blast resistance genes in rice.	Rice Genetics III. IRRI, Manila, Philippines.		565-569.	1996	IPI,PI12	IPi(t)*, IPi. Rmg56,Pi12(t), Pi12(t)*, Pi12, Pi-12(t)
1024		Zhu, L., C. Lu, P. Li, L. Shen, Y. Xu, P. He and Y. Chen	Using doubled haploid populations of rice for quantitative trait locus mapping.	Rice Genetics III. IRRI, Manila, Philippines.		631-636.	1996		
1025		Zhuang, C., G. Zhang, M. Mei and Y. Lu	Molecular mapping of genes for F1 pollen sterility in rice.	IRRN	21(2-3)	20-21.	1996	SC	Sc*, Hst18
1026		Zhuang, J.Y., H.X. Lin, J. Lu, H.R. Qian, S. Hittalmani, N. Huang and K.L. Zheng	Analysis of QTL x Environment interaction for yield components and plant height in rice.	RGN	13	127-129.	1996		
1027		Borkakati, R. and S.S. Virmani	Inheritance of a thermosensitive genic male-sterile mutant of Indica rice.	RGN	10	92-94.	1993	TMS3	tms3(t)*, ms82
1138		Shishido, R., T. Kinoshita, N. Ohmido and K. Fukui	Analysis and utility of chromosome information 68. The third rice 45SrDNA locus locates on the chromosome 11.	Breeding Science	44(Suppl. 2)	2	1994	R45S3	R45s3*, R45s3
5010		Lu, C.G., K. Takabatake and H. Ikehashi	Identification of segregation-distortion-neutral alleles to improve pollen fertility of indica-japonica hybrids in rice (Oryza sativa L.).	Euphytica	113	101-107.	2000	GA14	ga14
5014		Kageyama, Y., Fukuoka, H., Yamamoto, K. and Takeda, G.	The rice plant bearing endospermless grains: A novel mutant nduced by gamma-irradiation of tetraploid rice (Oryza sativa L.).	Japan. J. Breed.	41	341-345.	1991	ENL1	enl1
5018		Takahashi, M., N. Nagasawa, H. Kitano and Y. Nagato	Panicle phytomer 1 mutations affect the panicle architecture of rice.	Theor. Appl. Genet.	96	1050-1056.	1998	PAP1,DN3,FON1	pap1,dn3,OsFON1, fon1, OsRLCK219, RLCK219
5021		Tamura, Y., Kitano, H., Satoh, H. and Nagato, Y.	A gene profoundly affecting shoot organization in the early phase of rice development.	Plant Sci.	82	91-99.	1992	SHO2,SHO1	sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
5023	10409508	Satoh, N., S-K. Hong, A. Nishimura, M. Matsuoka, H. Kitano, Y. Nagato.	Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes.	Development	126	3629-3636.	1999	SHL2,SHL1,SHL3,SHL4,OSH1	shl2, SHL2, sh2, OsRDR6, RDR6,shl1, sh1,shl3, sh3,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
10000		KInoshita, T.	Allelism test between Pl-i and pl2(t) responsible for purple leaf in rice.	RGN	14	52-53	1997	PL2,PL	pl2(t), pl2,Pl, Pl1
10001		Sanchez, A. C. and G. S. Khush	A new gene for virescence character in rice	RGN	15	109	1998	V12	v12(t)
10003		Takahashi, M. and T. Kinoshita	Genic identification on the forms of the tillering dwarf rice. -Genetical studies on rice plant, LIX-.	Res. Bull. Univ. Farm Hokkaido Univ.	19	41-50.	1974	D10,D22,D23,D5,D31,D4,D7,D28,D33,D17,D27,D3,D14	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d22(t), dwf19, d22,d23(t), dwf20, d23,d5, dwf5,d31, dwf27,d4, dwf4,d7, dwf7,d28(d C), dwf24, dC, d28,d33(d B), dB, dwf29, d33,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d27(d t), dt, dwf23, d27, OsD27,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4
20001	9108284	Aggarwal, R.K., D.S. Brar and G.S. Khush	Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization.	Mol. Gen. Genet.	254	1-12.	1997		
20002		Ahn, S.N., Y.K. Kim, H.C. Hong, S.S. Han, H.C. Choi, H.P. Moon and S.R. McCouch	Molecular mapping of genes for resistance to Korean isolates of rice blast. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology. 	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		435-436.	1997	PI21,PI23,PI22	Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t)
20004		Albar, L., M. Lorieux, N. Ahmadi, I. Rimbault, A. Pinel, A.A. Sy, D. Fargette and A. Ghesquiere	Genetic basis and mapping of the resistance to rice yellow mottle virus. I. QTLs identification and relationship between resistance and plant morphology.	Theor. Appl. Genet.	97	1145-1154.	1998		
20005	9097041	Antonio, B.A., M. Emoto, J. Wu, I. Ashikawa, Y. Umehara, N. Kurata and T. Sasaki	Physical mapping of rice chromosomes 8 and 9 with YAC clones.	DNA Res.	3	393-400.	1996		
20006		Aoki, T., N. Kameya and I. Nakamura	A cDNA clone from rice accelerated overgrowth (ao) mutant encoding xyloglucan-related protein homolog.	RGN	14	133-136.	1997	AO	ao
20007		Asai, K., H. Satoh, H. Kitano and Y. Nagato	MORI1 gene regulates juvenile-adult phase change in rice.	Breeding Science	48(Suppl. 1)	229	1998	MORI1	mori1
20008		Ashikari, M., S. Saji, Y. Umehara, T. Matsumoto, M. Yano, T. Sasaki, A. Yoshimura and N. Iwata	Physical mapping around d-1 gene in rice.	Breeding Science	47(Suppl. 2)	192	1997	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
20009		Ashikari, M., A. Yoshimura, T. Matsumoto, M. Yang, T. Sasaki and N. Iwata	Identification of a YAC clone carrying d1 locus in rice.	Breeding Science	48(Suppl. 1)	76	1998		
20010		Ashikari, M., J. Wu, M. Yano, T. Sasaki and A. Yoshimura	Map-based cloning of rice Dwarf1 gene.	Breeding Science	48(Suppl. 2)	70	1998	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
20011		Ayres, N.M., A.M. McClung, P.D. Larkin, H.F.J. Bligh, C.A. Jones and W.D. Park	Microsatellites and a single-nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ plasm.	Theor. Appl. Genet.	94	773-781.	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20012		Baileg, P.C., R.S. McKibbin, J.R. Lenton,  M.J. Holdsworth, J.E. Fintham, and M.D. Gale	Genetic map locations for orthologous Vp1 genes in wheat and rice.	Theor. Appl. Genet.	98	281-284.	1999		
20013		Bharaj, T.S., S.S. Virmani and G.S. Khush	Chromosomal location of fertility restoring genes for 'wild abortive' cytoplasmic male sterility using primary trisomics in rice.	Euphytica	83	169-173.	1995	RF4,RF6	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,Rf6(t),Rf6(t)*, Rf5, Rf6
20014		Bi, X.Z., Y.H. Xiao and Y.B. Tao	Leaf proteins of PGMR during photoperiod-sensitive stage of fertility transformation.	RGN	14	87-90.	1997		
20015		Blair, M.W. and S.R. McCouch	Microsatellite and sequence-tagged site markers diagnostic for the rice bacterial leaf blight resistance gene xa-5.	Theor. Appl. Genet.	95	174-184.	1997	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
20017		Butany, W.T. and R.L.M. Ghose	Genetics of rice I. The inheritance of anthocyanin pigment in the leaf blade of rice (Oryza sativa L.).	Oryza Cuttack	2(1)	45-56.	1965		
20018		Cai, H.W. and H. Morishima	New storage protein genes detected by Acidic Formate-PAGE method.	RGN	14	76-78.	1997		
20019		Champoux, M.C., G. Wang, S. Sarkarung, D.J. Mackill, J.C. O'Toole, N. Huang, and S.R. McCouch	Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers.	Theor. Appl. Genet.	90	969-981.	1995		
20020		Chen, D., G.L. Wang and P.C. Ronald	Location of the rice blast resistance locus Pi5(t) in Moroberekan by AFLP bulk segregant analysis.	RGN	14	95-98.	1997	PI5	Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2
20021		Chen, D.H., M.dela Vina, T. Inukai, D.J. Mackill, P.C. Ronald and R.J. Nelson	Molecular mapping of the blast resistance gene, Pi44(t) in a line derived from a durably resistant rice cultivar.	Theor. Appl. Genet.	98	1046-1053.	1999	PI44,PIIS1	Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1
20022		Chen, X., S. Temnykh, Y. Xu, Y.G. Cho and S.R. McCouch	Development of a microsatellite framework map providing genome-wide coverage in rice   (Oryza sativa L.).	Theor. Appl. Genet.	95	553-567.	1997		
20023		Cho, Y.G., S.R. McCouch, M. Kuiper, M.-R. Kang, J. Pot, J.T.M Groenen and M.Y. Eum	Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.).	Theor. Appl. Genet.	97	370-380.	1998		
20024		Coh, Y.G., S.R. McCouch, M. Kuiper, M.R. Kang, J. Pot, J.TM. Groenen and M.Y. Eun	Integration of AFLP markers into an RFLP and SSLP map of rice (Oryza sativa L.).	RGN	14	106-109.	1997		
20026	9291955	Devos, K.M. and M.D. Gale	Comparative genetics in the grasses.	Plant Mol. Biol.	35	3-15.	1997		
20027		Devos, K.M., Z.M. Wang, J. Beales, T. Sasaki and M.D. Gale	Comparative genetic maps of foxtail millet (Setaria italica) and rice (Oryza sativa).	Theor. Appl. Genet.	96	63-68.	1998		
20028		Dhulappanavar, C.V.	Linkage studies in rice (Oryza sativa L.).	Euphytica	22	555-561.	1973		
20029		Dhulappanavar, C.V.	A pleiotropic inhibitory gene in rice (Oryza sativa L.).	Indian J. Agr. Sci.	43	848-851.	1973		
20030	4781375	Dhulappanavar, C.V.	The inheritance of pigmentation in certain plant parts of rice.	Can. J. Genet. Cytol.	15	867-870.	1973		
20031		Dhulappanavar, C.V.	Differential expression of a pleiotropic gene for flowering in rice.	Riso	24	287-292.	1975		
20032		Dhulappanavar, C.V.	Inheritance of pigmentation in rice (Oryza sativa L.)ligule, axil, stigma, and apiculus.	Genetica Iberica	28	295-304.	1976		
20033		Dhulappanavar, C.V.	A.linkage group in rice (Oryza sativa L.) involving anti-inhibitory genes.	Euphytica	26	427-432.	1977		
20034		Dhulappanavar, C.V., A.K. Kolhe and R. D'cruz	Inheritance of pigmentation of rice.	Indian J. Genet. & Plant Breed.	33(2)	176-179.	1973		
20035		Dhulappanavar, C.V., A.K. Kolhe and R. D'cruz	Inheritance of pigmentation in rice III. Auricle, junctura, pulvinus and leaf axil.	Indian J. Genet. & Plant Breed.	33(3)	389-392.	1973		
20036		Dhulappanavar, C.V., S.R. Hiremath and G.P. Sathyavathi	Linkage between a basic gene for anthocyanin pigmentation and a complementary gene for purple septum in rice (Oryza sativa L.).	Euphytica	24	633-638.	1975		
20037		Ding, H., G. Zhang, Y. Guo, S. Chen and S. Chen	RAPD tagging of a salt tolerance gene in rice.	In Application of DNA based marker mutations for improvement of cereals and other sexually reproduced crop plants. IAEA. TECDOC.	1010	63-66.	1998	SALT2	SalT2*(P), P, SalT2*, Sal2
20038	0	Doi, K., N. Iwata and A. Yoshimura	The construction of chromosome substitution lines of African rice (Oryza glaberrima Steud.)in the background of Japonica rice (O. sativa L.).	RGN	14	39-40.	1997		
20039		Doi, K., A. Yoshimura and N. Iwata	RFLP mapping and QTL analysis of heading date and pollen sterility using backross population between Oryza sativa L.and Oryza glaberrima Steud.	Breeding Science	48	395-399.	1998		
20040		Doi, K., K. Taguchi and A. Yoshimura	Construction and evaluation of Oryza glaberrima Steud.chromosome substitution lines of rice. -RFLP mapping of loci for heading date and hybrid sterility located on chromosome 10-.	Breeding Science	48(Suppl. 2)	104	1998		
20041	7651833	Dunford, R.P., N. Kurata, D.A. Laurie, T.A. Money, Y. Minobe and G. Moore	Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae.	Nucleic Acids Res.	23	2724-2728.	1995		
20042		Dung, L.V. and Y. Sano	Possible wide distribution of a photosensitivity gene, se-pat(t), in wild and cultivated rice.	RGN	14	72-73.	1997	SEPAT	se-pat(t), sepat(t)*(se), sepat(t)*
20043		Eguchi, T., M. Ashikari, A. Yoshimura and N. Iwata	Loci of physiological and morphological characters on RFLP linkage map in rice.	Breeding Science	48(Suppl. 1)	80	1998	V7,DRP4,DRP5,BC1,FGL,NAL1,V1,DU1	v7,drp4,drp5,bc1, bc-1, OsBC1, CWA1, FP1,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4,v1, NUS1,du1
20044		Endo, N., M. Akiyoshi and T. Ogawa	Resistance to Japanese races of rice bacterial blight in Vietnamese cultivars.	Breeding Science	47(Suppl. 2)	128	1997		
20045		Fujii, K., Y. Hayano-Saito, N. Sugiura, T. Kato, T. Izawa, M. Inoue and M. Iwasaki	Relationship between the difference in panicle blast resistance among line groups of Aichi 21', a rice stripe resistant line and their graphical genotypes on short arm part of chromosome 11.	Breeding Science	47(Suppl. 2)	130	1997	PBST*	Pbst*
20046		Fujii, K., A. Shumiya, N. Sugiura, T. Izawa, M. Inoue and T. Ito	Characteristics and durability of a panicle blast resistance gene Pb-st(t), originated from a rice parental line St.No.1.	Breeding Science	48(Suppl. 1)	282	1998		
20047		Fukui, K. and N. Ohmido	Rice genome research: an alternative approach based on molecular cytology.	In Genomes (J.P. Gustafson ed.), Plenum Press, New York.		109-121	2000		
20048		Fukui, K., R. Shishido and T. Kinoshita	Identification of the rice D-genome chromosomes by genomic in situ hybridization.	Theor. Appl. Genet.	95	1239-1245.	1997		
20050		Fukuoka, S. and K. Okuno	RFLP mapping of complementary genes for hybrid breakdown in cultivated rice.	RGN	14	99-102.	1997		
20051		Fukuoka, S., K. Okuno, M. Kawase, K. Miura and S. Kiyosawa	Genes controlling field resistance to blast in Japanese upland rice detected using RFLP markers.	IRRN	21(2-3)	50-51.	1996		
20052		Fukuoka, S., H. Namai and K. Okuno	Geographical variation of the genes controlling hybrid breakdown and genetic differentiation of the chromosomal regions harboring these genes in Asian cultivated rice, Oryza sativa L.	Genes Genet. Syst.	73	211-217.	1998		
20054		Fukuoka, S., H. Namai and K. Okuno	Selective RFLP markers for genotypes at the hwd2 responsible for hybrid breakdown in rice.	Breeding Science	48(Suppl. 1)	313	1998		
20055		Fukuta, Y.	Genetic and breeding analysis of shattering habit using the resistant mutant lines in rice (Oryza sativa L.).	Bull. Hokuriku Natl. Agric. Exp. Stn.	37	67-105.	1995	SH2,SH4,SH1	sh2,sh4, sh4(t)*(sh3), sh3, sh4,sh1
20056		Fukuta, Y. and T. Yagi	Mapping of a shattering resistance gene in a mutant line SR-5 induced from an indica rice variety, Nan-jing 11.	Breeding Science	48	345-348.	1998	SH4	sh4, sh4(t)*(sh3), sh3, sh4
20057		Fukuta, Y., H. Yoshida, K. Fukui and A. Kobayashi	Analysis of shattering degree and abscission layer development in shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety, Nan-jing 11.	Breeding Science	44	195-200.	1994		
20058		Fukuta, Y., S. Oya, K. Tamura, M. Hirae, I. Ashikawa and T. Yagi	Genetic and breeding analysis using molecular marker 8.Development of near-isogenic lines of resistant to green rice leafhopper (Nephotettix cincticeps UHLER) by the marker assisted selection using RFLP markers in rice (Oryza sativa L.).	Breeding Science	47(Suppl. 2)	166	1997		
20059		Fukuta, Y., K. Tamura, M. Hirae and S. Oya	Genetic analysis of resistance to green rice leafhopper (Nephotettix cincticeps UHLER) in rice parental line, Norin-PL6, using RFLP markers.	Breeding Science	48	243-249.	1998	GRH4	Grh4
20060		Futsuhara, Y. and F. Kikuchi	II. Chapter 2-2. Dwarf characters. -1. Inheritance of dwarfism.	In Science of the Rice Plant. v. 3. Genetics. T. Matsuo et al. eds. Nobunkyo, Tokyo.		300-308.	1997		
20061	9729767	Gallego, F., C. Feuillet, M. Messmer, A. Penger, A. Graner, M. Yano, T. Sasaki and B. Keller	Comparative mapping of the two wheat leaf rust resistance loci Lr1 and Lr10 in rice and barley,	Genome	41	328-336.	1998		
20062		Ghesquiere, A., M. Lorieux, E. Roumen, L. Albar and D. Fargette	Indica/japonica doubled haploid population as a model for mapping rice yellow mottle virus and blast resistance genes.	IRRN	21(2-3)	47-49.	1996		
20063		Hao, Z.B. and M. Ichii	A laternal root-deficient mutant RM109 screened for 2,4-D resistance in rice.	Breeding Science	47(Suppl. 2)	243	1997	LRT1	Lrt1*, Lrt1, Lrt 1
20064		Hao, Z.B. and M. Ichii	The auxin-resistant mutant of rice with altered lateral root initiation.In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology. 	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		299-300.	1997	LRT2,LRT1	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,Lrt1*, Lrt1, Lrt 1
20065	9475757	Harushima, Y., M. Yano, A. Shomura, M. Sato, T. Shimano, Y. Kuboki, T. Yamamoto, S.Y. Lin, B.A. Antonio, A. Parco, H. Kajiya, N. Huang, K. Yamamoto, Y. Nagamura, N. Kurata, G.S. Khush and T. Sasaki	A high-density rice genetic linkage map with 2275 markers using a single F2 population.	Genetics	148	479-494.	1998		
20066		Hashimoto, N., K. Higuchi, M. Koiwa, K. Yasuda and M. Daigen	Selection of individual having Pi-z, the rice blast true resistance gene, using RFLP markers in resistance sensitive cross progeny.	Breeding Science	48(Suppl. 2)	109	1998	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
20067		Kishimoto, N., H. Honda, K.I. Higo and H. Shimada	RFLP mapping of a rice NADP-malic enzyme gene Close linkage with a PEPCase gene on rice chromosome 1.	RGN	14	104-106.	1997	XGRPEPC,NADP-ME1,MAL1	XgrPepc*, XgrPepc,NADP-ME, ME6, OschlME, XcrMal1,Mal1, Mal I, Mal-I, Mal-1
20068		Kitano, H. and Y. Futsuhara	Character expression of induced dwarf mutants in rice. I. Effects of temperatures on culm elongation in the dwarf mutant line, Fukei 71.	Japan. J. Breed.	31	9-18.	1981		
20070		Hayano-Saito, Y., K. Fujii, T. Toyama, K. Saito, T. Izawa and M. Iwasaki	A molecular marker closely linked to rice stripe resistance gene, Stv-bi.	Breeding Science	47(Suppl. 2)	164	1997	STVB	Stvb(St2), St2, Stvb, Stv2
20071		Hayano-Saito, Y., T. Tsuji, K. Fujii, K. Saito, M. Iwasaki and A. Saito	Localization of the rice stripe disease resistance gene, Stv-bi, by graphical genotyping and linkage analyses with molecular markers.	Theor. Appl. Genet.	96	1044-1049.	1998	STVB	Stvb(St2), St2, Stvb, Stv2
20072		Hayano-Saito, Y., K. Saito, S. Kawasaki and M. Iwasaki	Towards map-based cloning of rice stripe disease resistance gene, Stbi.	Recent Advances in Breeding	40	77-80.	1998	STVB	Stvb(St2), St2, Stvb, Stv2
20073		Hayashi, H. and I. Takamure	Character expression of d-11 (norin 28 dwarf) showing dm type of interenode elongation habit in rice.	Breeding Science	47(Suppl. 2)	229	1997		
20074		He, P., L. Shen, C. Lu, Y. Chen and L. Zhu	Analysis of quantitative trait loci which contribute to anther culturability in rice (Oryza sativa L.).	Molecular Breeding	4	165-172.	1998		
20076		Hirabayashi, H., R. Kaji, T. Ogawa, D.S. Brar, A.R. Angeles and G.S. Khush	Mapping of a new introgression gene for brown planthopper (BPH) resistance from O.officinalis using RFLP markers in rice. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		401-402.	1997	BPH11,BPH12	bph11,bph12
20077	9291976	Hirochika, H.	Retrotransposons of rice their regulation and use for genome analysis.	Plant Mol. Biol.	35	231-240.	1997	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
20078		Hoan, N.T., N.P. Sarma and E.A. Siddiq	Identification and characterization of new sources of cytoplasmic male sterility in rice.	Plant Breeding	116	547-551.	1997	[CMS-DRW21018],[CMS-DRW21030],[CMS-VN1],[CMS-DRW21039]	[cms-DRW21018]*, [cms-DRW21018],[cms-DRW21030]*, [cms-DRW21030],[cms-VN1]*, [cms-VN1],[cms-DRW21039]*, [cms-DRW21039]
20079	9291966	Hong, G.	A rapid and accurate strategy for rice contig map construction by combination of fingerprinting and hybridization.	Plant Mol. Biol.	35	129-133.	1997		
20080		Horibata, A., A. Kawahara and H. Yamagata	Pleiotropic effects of the slender-glume (slg) on morphological and physiological characters in rice.	Breeding Science	47(Suppl. 2)	242	1997	SLG	slg, Rurm1, Urm1
20081	7914758	Huang, H. and G. Kochert	Comparative RFLP mapping of an allotetraploid wild rice species (Oryza latifolia) and cultivated rice (O.sativa).	Plant Mol. Biol.	25	633-648.	1994		
20082		Huang, N., A. Parco, T. Mew, G. Magpantay, S. McCouch, E. Guiderdoni, J. Xu, P. Subudhi, E.R. Angeles and G.S. Khush	RFLP mapping of isozymes, RAPD and QTLs for grain shape, brown planthopper resistance in a doubled haploid rice population.	Molecular Breeding	3	105-113.	1997	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
20083		Huang, N., E.R. Angeles, J. Domingo, G. Magpantay, S. Singh, G. Zhang, N. Kumaravadivel, J. Bennett and G.S. Khush	Pyramiding of bacterial blight resistance genes in rice marker-assisted selection using RFLP and PCR.	Theor. Appl. Genet.	95	313-320.	1997	XA5,XA13,XA4,XA21	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa21*, Xa21, OsXA21
20084	9484474	Hwang, Y.-S., E.E. Karrer, B.R. Thomas, L. Chen and R.L. Rodriguez	Three cis-elements required for rice alpha-amylase Amy3D expression during sugar starvation.	Plant Mol. Biol.	36	331-341.	1998	AMY3D,AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 
20085		Ichikawa, N., N. Kishimoto, A. Inagaki, A. Nakamura, Y. Koshino, Y. Yokozeki, M. Oka, S. Samoto, H. Akagi, K. Higo, C. Shinjyo, T. Fujimura and H. Shimada	A rapid PCR-aided selection of a rice line containing the Rf-1 gene which is involved in restoration of the cytoplasmic male sterility.	Molecular Breeding	3	195-202.	1997	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
20086		Ichitani, K., Y. Okumoto and T. Tanisaka	Genetic analysis of the rice cultivar Kasalath with special reference to two photoperiod sensitivity loci, E1 and Se-1.	Breeding Science	48	51-57.	1998	SE9,SE1,E1	Se9,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
20087		Iida, S., K. Miyahara and T. Nishio	Rice mutant lines lacking alpha-globulin.	Breeding Science	48	45-49.	1998	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77
20088		Iida, Y., H. Ohtsubo and E. Ohtsubo	Identifying transposonlike element Tnr2 in rice.	IRRN	21(2-3)	29-30.	1996		
20089		Ikeda, K., H. Furuumi, A. Yoshimura, H. Yasui and N. Iwata	Acrotrisomics in rice.	IRRN	21(2-3)	15-16.	1996		
20090		Imbe, T., S. Oba, M.J.T. Yanoria and H. Tsunematsu	A new gene for blast resistance in rice cultivar, IR24.	RGN	14	60-62.	1997	PI20,PIB,PIK	Pi20, Pi20(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
20091		Inoue, H., H. Nishida, Y. Okumoto and T. Tanisaka	Identification of an early heading time gene found in the Taiwanese rice cultivar Taichung 65.	Breeding Science	48	103-108.	1998	EF1,SE1,PIZ,PIZT	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
20092		Inoue, T., H. S. Zhong, A. Miyao, I. Ashikawa, L. Monna, S. Fukuoka, N. Miyadera, Y. Nagamura, N. Kurata, T. Sasaki and Y. Minobe	Sequence-tagged sites (STSs) as standard landmarkers in the rice genome.	Theor. Appl. Genet.	89	728-734.	1994		
20093		International Rice Research Institute	Rice Genetics and Cytogentics.	Proceed. Symp. Rice Genet.  Cytogenet. (1963). Elsevier, Amsterdam.		1-274.	1964		
20094		International Rice Research Institute	Rice Genetics.	Proceed. the First International Rice Genetics Symposium (1985). Manila, Philippines.		1-932.	1986		
20095		International Rice Research Institute	Rice Genetics II.	Proceed. the Second International Rice Genetics Symposium (1990). Manila, Philippines.		1-844.	1991		
20096		International Rice Research Institute 	Rice Genetics III.	Proceed. the Third International Rice Genetics Symposium (1995). G. S. Khush, ed.  Manila, Philippines.		1-1011.	1996		
20097		Inukai, T., A. Sako, Y. Kishima and Y. Sano	Intragenic recombination at the wx locus in rice.	Breeding Science	48(Suppl. 1)	15	1998	WX1,RAL1,CRL1,CRL2,RAL2	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,ral1*, ral1,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,crl2*, crl2,ral2*, ral2
20098		Ishikawa, R. and M. Freeling	Mutator-like transposase domain found in rice genome.	Proceed. 5th Intern. Symp. on Rice Molecular Biology. Academia Sinica, Taipei, Taiwan.		133-139.	1997	RMU1-IR36*	RMu1-IR36*, RMu1-IR36
20099		Ishikawa, R., Y. Harata, Y. Tuchimine, M. Senda, S. Akada, T. Harada and M. Niizeki	Complex constitutive nature of Japanese upland rice, Oryza sativa L.	Euphytica	98	197-203.	1997		
20100		Isshiki, M., M. Nakajima, H. Satoh and K. Shimamoto	Analysis of dull tissue-specific mutants affecting splicing of Wxb transcripts.	Breeding Science	48(Suppl. 2)	43	1998	DU1,DU2	du1,du2
20101		Itoh, J.I., A. Hasegawa, H. Kitano and Y. Nagato	A gene associated with temporal regulation of vegetative development in rice.	RGN	14	141-144.	1997	PLA1	pla1, OsPLA1, plt1, CYP78A11
20102		Itoh, J., H. Kitano and Y. Nagato	Analysis of leaf development in rice using shoot organization mutant.	Breeding Science	48(Suppl. 2)	296	1998		
20103	9267430	Itoh, K., M. Nakajima and K. Shimamoto	Silencing of waxy genes in rice containing Wx transgenes.	Mol. Gen. Genet.	255	351-358.	1997	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20104		Itoh, Y., S. Shibata and I. Takamure	Expression of twisted leaf blade in  rice-its relation to the developmental phase change.	Breeding Science	48(Suppl. 1)	231	1998		
20105	9291975	Izawa, T., T. Ohnishi, T. Nakano, N. Ishida, H. Enoki, H. Hashimoto, K. Itoh, R. Terada, Ch. Wu, Ch. Miyazaki, T. Endo, S. Iida and K. Shimamoto	Transposon tagging in rice.	Plant Mol. Biol.	35	219-229.	1997		
20106		Jeon, Y.-H., S.-N. Ahn, H.-C. Choi, T.-R. Hahn and H.-P. Moon	Molecular mapping of gene for brown planthopper resistance in rice (Oryza sativa L.). In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		423-424.	1997	BPH1	Bph1
20107	7753830	Jiang, J., B.S. Gill, G.-L. Wang, P.C. Ronald and D.C. Ward	Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes.	Proc. Natl. Acad. Sci. U.S.A.	92	4487-4491.	1995	XA21	Xa21*, Xa21, OsXA21
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20111		Kadam, B.S., D.S. Ghorpade and J.S. Desale	Genic analysis in rice-IV.	Indian J. Genet. & Plant Breed.	40	354-365.	1980		
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20113		Kaku, H.	The dosage effect of bacterial blight resistance genes Xa1 and Xa3 in rice.	RGN	14	64-67.	1997	XA1	Xa1(Xe), Xe, Xa1, Xa-1
20114		Kamijima, O.	Some considerations on the mechanism of expression of dwarfing genes in rice plants. Responses to gibberellic acid and the presence of endogenous gibberellin-like substances in rice plants.	Sci. Rept. Fac. Agri. Kobe Univ.	10	177-182.	1972		
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20128	9862503	Kisaka, H., M. Kisaka, H-Y. Lee and T. Kameya	Isolation of a cDNA for tryptophan synthase beta from rice and studies of its expression in a 5-methyltryptophan-resistant mutant of rice.	Plant Mol. Biol.	38	875-878.	1998		
20129		Kishima, Y. and Y. Sano	Structural characterization based on the physical map of the rice BAC clones and its applications.	Recent Advances in Breeding	40	69-72.	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20130		Kiyosawa, S. and I. Ando	II. Chapter 4-1.Inheritance of disease resistance. -1. Blast diseases resistance.	In Science of the Rice Plant. v. 3. Genetics. T. Matsuo et al. eds. Nobunkyo, Tokyo.		470-500.	1997		
20131		Kobayashi, K., R. Ishikawa, M. Senda, S. Akada, T. Harada and M. Niizeki	Six glabrous phenotypes of rice classified with a scanning electron microscope.	RGN	14	53-55.	1997	AMY1A,GL1	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3
20132		Kobayashi, S. and Y. Sano	Developmental and genetical study of cross-incompatibility in rice.	Breeding Science	47(Suppl. 2)	216	1997	SUCIF,CIF1	SuCinf*, SUCINF, Su-Cif, Su Cinf,Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf
20134		Koh. H.J. and M.H. Heu	A new dominant dwarfing gene in rice.	RGN	10	77-79.	1993	DH	D-h(t)*, Dwf43, D-h
20135		Koh. H.J. and M.H. Heu	A new dominant dwarf-gene development by mutathion in rice.	Korean J. Breed.	26(4)	368-374.	1994		
20136		Koh. H.J. and M.H. Heu	Physicocemical properites of sugary-endosperm mutants in rice.	Korean J. Crop. Sci.	39(1)	1-6.	1994		
20137		Koh, H.J. and M.H. Heu	Some mutants for grain quality in rice. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		119-120.	1997		
20138		Koh, H.J., S.Z. Park, Y.J. Won and M.H. Heu	Nutritional and agronomic characteristics of super-giant embryo mutant in rice.	Korean J. Crop. Sci.	38(6)	537-544.	1993		
20139		Koh, H.J., K.W. Cha and M.H. Heu	Inheritance and some physicochemical properites of newly induced low-amylose endosperm mutants in rice.	Korean J. Breed.	29(3)	368-375.	1997	DU6A,DU6B,DU7	du6a(t)*, du6, du6a,du6b(t)*, du6b, du7,Du7(t)*, Du7, Du8
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20150		Lin, H.X., T. Yamamoto, T. Sasaki and M. Yano	Epistatic interaction of expression between photoperiod sensitivity genes, Hd-2 and Hd-6 in rice    (Oryza sativa L.).	Breeding Science	48(Suppl. 1)	70	1998		
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20156		Kubo, A., Y. Nakamura, K. Harada, T. Matsuda and H. Satoh	Alteration of amylopectin fine structure in endosperms of sugary-1 mutants of rice.	Breeding Science	48(Suppl. 1)	163	1998		
20157		Kubo, T. and A. Yoshimura	Linkage analysis of hybrid weakness in rice.	Breeding Science	48(Suppl. 1)	81	1998	HWE1	hwe1(t)*, hwe1
20158		Kumamaru, T. and H. Satoh	Mapping the mutant gene, esp-1, for seed storage protein in rice.	Breeding Science	47(Suppl. 2)	176	1997	ESP1	esp1(rsp1), rsp1, esp1
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20163		Wan, J., H. Ikehashi, M. Sakai, N. Horisue and T. Imbe	Linkage analysis of hybrid sterility gene S-7 in rice (Oryza sativa L.).	Breeding Science	48(Suppl. 2)	105	1998	EST9,S17,S7	Est9 (Est c1), Est8, Estcl, Est c1, Est_9,S17(t)*,S7
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20237	8980525	Reddy, A.R., B. Scheffler, G. Madhuri, M.N. Srivastava, A. Kumar, P.V. Sathyanarayanan, S. Nair and M. Mohan	Chalcone synthase in rice (Oryza sativa L.) Detection of the CHS protein in seedlings and molecular mapping of the chs locus.	Plant Mol. Biol.	32	735-743.	1996		
20238		Redona, E.D. and D.J. Mackill	Quantitative trait locus analysis for rice panicle and grain characteristics.	Theor. Appl. Genet.	96	957-963.	1998		
20239		Rice Genome Research Program (RGP)	The rice RFLP linkage map as of Feb.25,  1993.	Rice Genome, NIAR/STAFF	2(1)	11-13.	1993		
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20243		Rybka, K., M. Miyamoto, I. Ando, A. Saito and S. Kawasaki	High resolution mapping of the indica-derived rice blast resistance genes II. Pi-ta2 and Pi-ta and a consideration of their origin.	Mol. Plant Microbe Interact.	10	517-524.	1997	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
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20245		Saka, N., T. Tsuji and T. Izawa	Allelism tests of green ricehopper resistant gene Grh-3(t) among rice cultivars screened by RFLP markers method.	Breeding Science	48(Suppl. 1)	283	1998		
20246		Sako, A., H. Nagano, T. Inukai and Y. Sano	Molecular characterization of mutations induced by gamma rays and EMS treatments at the rice wx locus.	Breeding Science	48(Suppl. 2)	330	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20247		Sanchez A.C. and G.S. Khush	A new gene for spreading panicle in rice.	RGN	14	47-48.	1997	SPR4	Spr4(t)*, Spr4(t)
20248		Sanchez A.C. and G.S. Khush	A new gene for white panicle in rice.	RGN	14	49	1997		
20249		Sanchez, A.C. and G.S. Khush	Inheritance and linkage relationships of twenty-one genes in rice, Oryza sativa L..	SABRAO Journal	30(2)	51-60	1998		
20250		Sanchez, A.C., D. Yang, G.S. Khush, Y. Zhu and N. Huang	Construction of overlapping BAC clones for xa5 region of chromosome 5.	RGN	14	118-119.	1997	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
20251		Sane, A.P., P. Seth, S.A. Ranade, P. Nath and P.V. Sane	RAPD analysis of isolated mitochondrial DNA reveals heterogeneity in elite wild abortive  (WA) cytoplasm in rice.	Theor. Appl. Genet.	95	1098-1103.	1997	[CMS-WA]	[cms-WA]
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20256		Sato, H. and M. Ichii	A new locus cnx3 involved in molybdenum cofactor biosynthesis in rice (Oryza sativa L.).	Breeding Science	48	123-128.	1998	CNX3,CNX2,CNX1	cnx3*, cnx3, cnx 3,cnx2*, cnx2, cnx 2,cnx1*, cnx1, cnx 1
20257		Sato. S., T. Kinoshita and M. Takahashi	Linkage analysis of rice plant, by the use of Nishimura's recipocal-translocation lines. -Genetical studies on rice plant, LIV-.	Mem. Fac. Agr. Hokkaido Univ.	8(4)	367-376.	1973		
20258		Satoh, N., S.K. Hong, M. Matsuoka, H. Kitano and Y. Nagato	Characterization of shootless mutants in rice.	RGN	14	145-147.	1997	SHL4,SHL1,SHL3,SHL2	shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,shl1, sh1,shl3, sh3,shl2, SHL2, sh2, OsRDR6, RDR6
20259		Sawamura, N. and Y. Sano	Reconfirmation of gamete killer, S11 in Indica-Japonica hybrid.	Breeding Science	47(Suppl. 2)	79	1997	S11	S11(t)
20260		Sawamura, N. and Y. Sano	Allelic differentiation at the gamete eliminator, S6, in wild and cultivated rice strains.	Breeding Science	48(Suppl. 2)	280	1998		
20261		Seetharaman, R.	Certain considerations on genic analysis and linkage groups in rice.	In Proceed. Symp. Rice Genet. Cytogenet., Internatl. Rice Res. Inst. (1963). Elsevier, Amsterdam.		205-214.	1964		
20262		Shen, Y.W., Z.Q. Guan, J. Lu, J.Y. Zhuang, K.L. Zheng, M.W. Gao and X.M. Wang	Linkage analysis of a fertility restoring mutant generated from CMS rice.	Theor. Appl. Genet.	97	261-266.	1998	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
20263		Shibata, S., Y. Ito and I. Takamure	Genetic analysis of twisted leaf mutant induced by anther culture in rice.	Breeding Science	47(Suppl. 2)	173	1997	TW	tw(t)*(tl), tl, tw
20264		Shimizu, T., S.Y. Lin, T. Yamamoto, T. Sasaki and M. Yano	Mapping of QTLs controlling elongation of internode length of rice using backcross inbred lines.	Breeding Science	48(Suppl. 2)	83	1998		
20265	9097042	Shimokawa, T., N. Kurata, J. Wu, Y. Umehara, I. Ashikawa and T. Sasaki	Assignment of YAC clones spanning rice chromosomes 10 and 12.	DNA Res.	3	401-406.	1996		
20266		Shishido, R., S. Apisitwanich, N. Ohmido, Y. Okinaka, K. Mori and K. Fukui	Detection of specific chromosome reduction in rice somatic hybrids with the A, B and C genomes by multi-color genomic in situ hybridization.	Theor. Appl. Genet.	97	1013-1018.	1998		
20271		Subudhi, P.K., S. Nandi, C. Casal, S.S. Virmani and N. Huang	Classification of rice germplasm III. High-resolution fingerprinting of cytoplasmic genetic male-sterile (CMS) lines with AFLP.	Theor. Appl. Genet.	96	941-949.	1998		
20272		Sugimoto, K. and Y. Takeoka	Genetic analysis of plant regeneration ability in anther culture of rice (Oryza sativa L.).	Breeding Science	48	115-121.	1998		
20273		Sugimoto, N., G. Takeda, Y. Nagato and J. Yamaguchi	Temporal and spatial expression pattern of rice alpha-amylase gene RAmy1A during seed development.	RGN	14	148-150.	1997	AMY1A,AMY1C	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C
20274		Sumi, H., S. Irei and S. Sato	Further study on the chromosome carrying an earliness gene Efx in rice.	Breeding Science	48(Suppl. 2)	93	1998	EFX	Efx(t)*, Efx, Ef5(t)*
20275		Suzuki, Y., Y. Iwai, I. Honda and U. Matsukura	Analysis for content of volatiles in stored rice grain from varieties with and without lipoxygenase-3 in seeds.	Breeding Science	48(Suppl. 1)	167	1998	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
20276		Tada, Y., K. Sakamoto and H. Akagi	Expression of rice RPR1 and its effect on resistance to disease.	Breeding Science	48(Suppl. 2)	24	1998	RPR1	RPR1*, Rpr1-1, Rpr1
20277		Taguchi-Shiobara, F., S.Y. Lin, K. Tanno, T. Komatsuda, M. Yano, T. Sasaki and S. Oka	Mapping quantitaive trait loci associated with regeneration ability of seed callus in rice, Oryza sativa L.	Theor. Appl. Genet.	95	828-833.	1997		
20278		Takabe, E., S. Kusakabe, H. Satoh, H. Kitano and Y. Nagato	Developmental mutants affect early embryogenesis in rice.	Breeding Science	47(Suppl. 2)	217	1997	CLE1,GLE2,GLE3,EML2,GLE4,GLE1	cle*, cle1,gle2*, gle2,gle3*, gle3,eml2*, eml2,gle4*, gle4,gle1*. gle1
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20281		Takahashi, M. and K. Takeda	Genetical studies on rice plants. Grouping of rice cultivars based on their internode-length patterns of culms.	Mem. Fac. Agr. Hokkaido Univ.	7	32-43.	1969		
20282		Takahashi, Y., A. Shomura, M. Sato, M. Yano and T. Sasaki	Linkage map and YAC contig of the chromosomal region containing a rice photoperiod sensitivity gene, Hd-6.	Breeding Science	48(Suppl. 1)	69	1998		
20283		Takamure, I.	Genetic analysis of the minute grain mutant (mik) induced in the rice variety 'Kitaake'. -Genetic interactions between mik and small grain dwarf genes-.	Breeding Science	48(Suppl. 2)	82	1998	MIK	mi k, mik, mi2
20284		Takemoto, Y., M.Y. Son, T. Ito, H. Satoh, T. Kumamaru and M. Ogawa	Genetic and cytochemical analysis of high 57-kD polypeptide mutants in rice.	IRRN	21(2-3)	19-20.	1996	ESP2	esp2(rsp2), rsp2, esp2, PDIL1-1
20285		Takeuchi, Y., S.Y. Lin, T. Sasaki and M. Yano	Estimation of gene effcts of QTLs for seed dormancy in rice using near-isogenic lines.	Breeding Science	48(Suppl. 2)	81	1998	SDR1,SDR2	Sdr1*, Sdr1,Sdr2*, Sdr2
20286		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps Uhler) resistance IV. Localization of the chromosomal regions resistant to green rice leafhopper in Norin-PL5.	Breeding Science	47(Suppl. 2)	167	1997		
20287		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	RFLP mapping of the green rice leafhopper (Nephotettix cincticeps UHLER) resistant gene in rice Norin-PL2. In Harmonizing agricultural productivity and conservation of biodiversity Breeding and ecology.	Proceed. 8th SABRAO Congress and Annual Meeting of Korean Breed. Soc.		409-410.	1997	GRH1	Grh1
20288		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Genetic analysis of the green rice leafhopper (Nephotettix cincticeps UHLER) resistance V. RFLP mapping of the resistant gene in Saikai 182.	Breeding Science	48(Suppl. 2)	108	1998		
20289		Tamura, K., K. Nomura, H. Namai and F. Kikuchi	Determination of the developmental stage in which Se-1 shows remarkable photoperiod sensitivity in rice.	Breeding Science	48(Suppl. 2)	302	1998		
20290		Tan, X.L., A. Vanavichit, S. Amornsilpa and S. Trangoonrung	Genetic analysis of rice CMS-WA fertility restoration based on QTL mapping.	Theor. Appl. Genet.	97	994-999.	1998		
20291		Tanahara, N. and S. Sato	Gene analysis for the uppermost culm diameter in Taichung 65 having a big uppermost culm (Buc) derived from a Japanese rice cultivar, Aikawa 1, and pleiotropic effects of the gene on several traits.	Breeding Science	48(Suppl. 1)	77	1998	BUC	Buc*, Buc
20292		Tang, S.X., G.S. Khush and D.S. Brar	A new null allele at Amp4 locus in a traditional rice cultivar.	RGN	14	75-76.	1997	AMP4	Amp4
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20295		Tao, L., N. Kameya, Y. Fukuta and I. Nakamura	Molecular cloning of OSDIM cDNA and its linkage analysis in rice.	RGN	14	130-133.	1997	DIM*	OsDIM*, OsDIM, DIM, dim, OSDIM
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20299		Tsuchimine, Y., Y. Miyashita, R. Ishikawa, M. Senda, S. Akada, T. Harada and M. Niizeki	Relationship between transposon and mutability caused by hybrid dysgenesis in rice.	RGN	14	129-130.	1997	RMU1	Rmu1*, RMu1
20300		Tsuji, T., N. Saka, T. Tohyama, H. Iwata and T. Izawa	Screening of the RAPD marker by using resistant lines derived from japonica rice parental line, Kanto PL5.	Breeding Science	48(Suppl. 1)	284	1998	BPH2	bph2
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20302		Tsunoda, Y., S. Nakamura, N-S. Jwa, N. Sasaki, Y. Okabe, O. Kodama and S. Kawasaki	Characterization of cDNAs in the region of rice blast resistance gene Pi-b.	Breeding Science	47(Suppl. 2)	7	1997	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
20303		Tsunoda, Y., N.-S. Jwa, T. Motomura, K. Kamihara, S. Nakamura, H. Onodera, M. Ugaki, K. Akiyama, O. Kodama and S. Kawasaki	Trial on screening and identification of the rice blast resistance gene Pi-b due to the complimentation test.	Breeding Science	48(Suppl. 2)	20	1998	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
20304		Tu, J., I. Ona, Q. Zhang, T.W. Mew, G.S. Khush and S.K. Datta	Transgenic rice variety 'IR72' with Xa21 is resistant to bacterial blight.	Theor. Appl. Genet.	97	31-36.	1998	XA21	Xa21*, Xa21, OsXA21
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20308	7500960	Van Deynze, A.E., J.C. Nelson, L.S. O'Donoughue, S.N. Ahn, W. Siripoonwiwat, S.E. Harrington, E.S. Yglesias, D.P. Braga, S.R. McCouch and M.E. Sorrells	Comparative mapping in grasses. Oat relationships.	Mol. Gen. Genet.	249	349-356.	1995		
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20312	7757120	Wang, G-L., T.E. Holsten, W-Y. Song, H.-P. Wang and P.C. Ronald	Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus.	Plant J.	7(3)	525-533.	1995		
20313		Wang, G.L., W.Y. Song, L.L. Chen, R. Ruan, S. Sideris and P.C. Ronald	Resistance spectrum, race specificity and expression of the Xa21 gene family.	IRRN	21(2-3)	45-46.	1996		
20314		Wang, J., K.D. Liu, C.G. Xu, X.H. Li and Qifa Zhang	The high level of wide-compatiblity of variety 'Dular' has a complex genetic basis,	Theor. Appl. Genet.	97	407-412.	1998		
20316	9039498	Wang, Z.X., A. Idonuma, Y. Umehara, W. Van Houten, I. Ashikawa, Y. Minobe, N. Kurata and T. Sasaki	Physical mapping of rice chromosome 1 with yeast artificial chromosomes (YACs).	DNA Res.	3	291-296.	1996		
20317		Wissuwa, M., M. Yano and N. Ae	Mapping of QTLs for phosphorus-deficiency tolerance in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	777-783.	1998	PSTOL1	Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
20318		Wu, L., H. Nagano, S. Kawasaki, Y. Kishima and Y. Sano	Identification of the DNA fragments located in the vicinity of waxy locus responsible for gamete elimination.	RGN	14	123-124.	1997		
20319		Wu, P., A. Lou, J. Zhu, L. Zhang, Y. Wu, N. Huang and D. Senadhira	Molecular markers linked to genes for tolerance to ferrous toxicity in rice seedlings.	RGN	14	90-92.	1997		
20320		Wu, X., Y. Ihara, K. Takeda and H. Kitano	New dm-type dwarf mutants varying in internode elongation patterns are controlled by different mutant genes at the same locus in rice (Oryza sativa L.).	Breeding Science	49	147-153	1999	SSI1,D61	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
20321		Wu, X., T. Saeda, K. Takeda and H. Kitano	Dominant gene Ssi1 expresses semidwarfism by inhibiting the second internode elongation in rice.	Breeding Science	50	17-22	2000		
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20323		Xiong, L., K.D. Liu, X.K. Dai, S.W. Wang, C.G. Xu, D.P. Zhang, M.A.S. Maroof, T. Sasaki and Q. Zhang	A high density RFLP map based on the F2 population of a cross between Oryza sativa and O. rufipogon using Cornell and RGP markers.	RGN	14	110-116.	1997		
20324		Xiong, L.Z., G.P. Yang, C.G. Xu, Qifa Zhang and M.A. Saghai Maroof	Relationships of differential gene expression in leaves with heterosis and heterozygosity in a rice diallel cross.	Molecular Breeding	4	129-136.	1998		
20325		Xiong, W., S. Uozu, K. Hattori, K. Takeda and H. Kitano	Dominant gene, Ssi1(t) located on the chromosome 1 shows the dm-type internode elongation pattern accompanied by a semidwarfness.	RGN	14	45-47.	1997		
20326	9065686	Xu, Y., L. Zhu, J. Xiao, N. Huang and S.R. McCouch	Chromosomal regions associated with segregation distortion of molecular markers in F2 , backcross, doubled haploid, and recombinant inbred populations in rice      (Oryza sativa L.).	Mol. Gen. Genet.	253	535-545.	1997		
20327		Yamagishi, M., M. Otani, M. Higashi, Y. Fukuta, K. Fukui, M. Yano and T. Shimada	Chromosomal regions controlling anther culturability in rice (Oryza sativa L.).	Euphytica	103	227-234.	1998		
20328		Yamaguchi, J.	Analysis of embryo-specific alpha-amylase using isolated mature rice embryos.	Breeding Science	48	365-370.	1998	AMY1A,AMY1C,AMY3D,AMY3E	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 
20329		Yamaguchi, T., S. Kawasaki, Y. Nagato and H.-Y. Hirano	An approach to isolate the DL gene by positional cloning.	Breeding Science	48(Suppl. 2)	21	1998	DL	DL, dl(lop), lop, dl, dl1
20330		Yamaguchi, Y., R. Ikeda, H. Hirasawa, M. Minami and A. Ujihara	Linkage analysis of thermosensitive genic male sterility gene, tms-2 in rice  (Oryza sativa L.).	Breeding Science	47	371-373.	1997	TMS2,TMS2	tms2, ms81, tms-2,tms2
20331	9291967	Yamamoto, K. and T. Sasaki	Large-scale EST sequencing in rice.	Plant Mol. Biol.	35	135-144.	1997		
20332		Yamamoto, T., Y. Kuboki, S.Y. Lin, T. Sasaki and M. Yano	Fine mapping of quantitative trait loci Hd-1, Hd-2 and Hd-3, controlloing heading date of rice, as single Mendelian factors.	Theor. Appl. Genet.	97	37-44.	1998	SE1,HD2,HD3A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20333		Yamanaka, S., I. Nakamura, H. Nakai and Y.I. Sato	Analysis for diversity of rice waxy mutation.2. Diversity of mutation within waxy structural gene.	Breeding Science	48(Suppl. 1)	260	1998		
20334		Yamanaka, S., I. Nakamura, H. Nakai, and Y.I. Sato	Analysis for diversity of rice waxy mutation. 3. Minute mutation of promoter and structural regions of waxy gene.	Breeding Science	48(Suppl. 2)	226	1998		
20335		Yan, J.Q., J. Zhu, C.X. He, M. Benmoussa and P. Wu	Quantitative trait loci analysis for the developmental behavior of tiller number in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	267-274.	1998		
20336		Yang, D., A. Parco, S. Nandi, P. Subudhi, Y. Zhu, G. Wang and N. Huang	Construction of a bacterial artificial chromosome (BAC) library and identification of overlapping BAC clones with chromosome 4-specific RFLP markers in rice.	Theor. Appl. Genet.	95	1147-1154.	1997		
20337		Yang, D.C., G.B. Magpantay, M. Mendoza, N. Huang and D.S. Brar	Construction of a contig for a fertility restorer gene, Rf2 in rice using BAC library and its sequence homology with Rf2 gene of maize.	RGN	14	116-118.	1997		
20338		Yang, D., A. Sanchez, G.S. Khush, Y. Zhu and N. Huang	Construction of a BAC contig containing the xa5 locus in rice.	Theor. Appl. Genet.	97	1120-1124.	1998		
20339		Yang, Z.	Inheritance of photoperiod sensitive genic male sterility and breeding of photoperiod sensitive genic male-sterile lines in rice (Oryza sativa L.) through anther culture.	Euphytica	94	93-99.	1997		
20340		Yang, Z., T. Yujuan, H. Bingchao, C. Jianwei, C. Lixia, X. Yankang, Z. Xudong, Q. Qian and Z. Dali	The inheritance of resistance to gall midge in the rice variety Duokang 1.	RGN	14	67-69.	1997	RF3,RF2,GM6	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf2 (Rfx), Rfx, Rf2,Gm6(t), Gm6
20341	9291968	Yano, M. and T. Sasaki	Genetic and molecular dissection of quantitative traits in rice.	Plant Mol. Biol.	35	145-153.	1997		
20342		Yoshimura. A, T.W. Mew, G.S. Khush and T. Omura	Genetics of bacterial blight resistance in a breeding line of rice.	Phytopathology	74(7)	773-777.	1984	XA10	Xa10, Xa-10
20343	9291959	Yoshimura, A., O. Ideta and N. Iwata	Linkage map of phenotype and RFLP markers in rice.	Plant Mol. Biol.	35	49-60.	1997		
20344		Yoshimura, S., A. Yoshimura, N. Iwata, S.R. McCouch, M.L. Abenes, M.R. Baraoidan, T.W. Mew and R. Nelson	Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers.	Molecular Breeding	1	375-387.	1995	XA4,XA10,XA5,XA3	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa10, Xa-10,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
20345		Yuan, S.-C., Z.-G. Zhang, H.-H. He, H.-L. Zen, K.-Y. Lu, J.-H. Lian and B.-X. Wang	Two phtoperiodic-reactions in photoperiod-sensitive genic male-sterile rice.	Crop Sci.	33	651-660.	1993		
20346		Zhang, G.Y., Y. Guo, S.L. Chen and S.Y. Chen	RFLP tagging of a salt tolerance gene in rice.	Plant Sci.	110	227-234.	1995		
20347	9291965	Zhang, H.-B. and R.A. Wing	Physical mapping of the rice genome with BACs.	Plant Mol. Biol.	35	115-127.	1997		
20348		Zhang, Q., Y.J. Gao, M. A. Saghai Maroof, S.H. Yang and J.X. Li	Molecular divergence and hybrid performance in rice.	Molecular Breeding	1	133-142.	1995		
20349		Zhang, Qifa, K.D. Liu, G.P. Yang, M.A. Saghai Maroof, C.G. Xu and Z.Q. Zhou	Molecularmarker diversity and hybrid sterility in indica-japonica rice crosses.	Theor. Appl. Genet.	95	112-118.	1997		
20350		Zhang, S., W.-Y. Song, L. Chen, D. Ruan, N. Taylor, P. Ronald, R. Beachy and C. Fauquet	Transgenic elite Indica rice varieties, resistnat to Xanthomonas oryzae pv.oryzae.	Molecular Breeding	4	551-558.	1998	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20351	8448360	Zhao, X. and G. Kochert	Phylogenetic distribution and genetic mapping of a microsatellite from rice Oryza sativa L.	Plant Mol. Biol.	21	607-614.	1993		
20352		Zhou, Z., P.J. Bebeli, D.J. Somers and J.P. Gustafson	Direct amplification of minisatellite-region DNA with VNTR core sequences in the genus Oryza.	Theor. Appl. Genet.	95	942-949.	1997		
20353		Zhu, J., M.D. Gale, S. Quarrie, M.T. Jackson and G.J. Bryan	AFLP markers for the study of rice biodiversity.	Theor. Appl. Genet.	96	602-611.	1998		
20354		Zhu, X. and J.N. Rutger	Inheritance of induced dominant and recessive genetic male-sterile mutants in rice (Oryza sativa L.).	SABRAO Journal	31(1)	17-22	1999	_,_,_	Ms,Ms,ms
20355		Zhuang, J.-Y., H.-X. Lin, J. Lu, H.-R. Qian, S. Hittalmani, N. Huang and K.-L. Zheng	Analysis of QTL x environment interaction for yield components and plant height in rice.	Theor. Appl. Genet.	95	799-808.	1997		
20356		Kaushik, R.P. and G.S. Khush	Endosperm mutants in rice Gene expression in Japonica and Indica backgrounds.	Cereal Chem.	68(5)	487-491.	1991	AE1,FLO1,DU1,FLO2,DU2	ae1,flo1, flo1-1, o,du1,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 ,du2
20357		Kinoshita, T.	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. Gene symbol registration No. 41.	RGN	9	2	1992		
20358		Yang, R.C., W.M.Li, N.Y.Wang, K.J.Liang & Q.H.Chen	Discovery and preliminary study on indica photosensitive genic male-steril germplasm 5460a.	Chinese J. Rice Sci.	3(1)	47-48	1989	TMS1	tms1 (TGMS), ms80, tms-1, tms(t)
20359		Kinoshita, T.	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Group. Gene symbol registration No. 42.	RGN	9	2	1992		
20360		Miyoshi, K., Nakata, E. and Nagato, Y.	Characterization of viviparous mutants in rice.	Breeding Science	50	207-213	2000	RIV1,RIV2,ENL1	riv1,riv2,enl1
20361	11090216	Itoh, J.-I., Kitano, H., Matsuoka, M. and Nagato, Y.	SHOOT ORGANIZATION genes regulate shoot apical meristem organization and the pattern of leaf primordium initiation in rice.	Plant Cell	12	2161-2174	2000	SHO3,SHO2,SHO1	sho3,sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
20362		Iwata, N.	I. Registration of new gene symbols (New system)	RGN	13	12-18	1996	RHZ,GA14,PI8,PI16,PI17,PI14,PI12,PI15,PI13,PI30,PI3	Rhz(t), Rhz1,ga14,Pi8, Pi-8,Pi16(t), Pi16, Pi-16(t),Pi17(t), Pi17, Pi-17(t),Pi14(t), Pi14(t)*, Pi14,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi15(t), Pi15, RMg34.,Pi13(t), Pi13(t)*, Pi13,Pi-30(t), Pi30(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
20363		Kinoshita, T.	I. New gene symbols registered.	RGN	12	9-24	1995	GLUP3,ACEF1,EF2,EF3,EF4,EST11,MAL3,S12,S14,SE6,SE7,TSV2,EST10,S13,EST13,AMP5,TSV1,S16,GLUP4,MAL2,EST12,GLUP1,GLUP2,S15,GA13,PI5,PIIS2,PIIS1,PIM,PISE1,PISE2,PISE3,PIF,PIKM	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,Ac ef1, Acef1,ef2 (=lf-1), ef2(t) (lf1), lf1, ef2,ef3(t), ef3,ef4, ef4(t),Est11(t), Est11,Mal3(t)), Mal3,S12(t),S14(t),se6(t),se7(t),tsv2,Est10,,Est13,Amp5,tsv1(RTSV), RTSV, tsv1,,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,Mal2,Est12,Glup1(Esp5, Gup1), Gup1, Esp5, Glup1,glup2(esp6, gup2), esp6, gup2, glup2,S15(S10), S10,ga13,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pi f, PIF, Pif, RMg3, Pi-f,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
20364		Kinoshita, T.	I. Registration of new gene symbols.	RGN	11	8-11	1994	AO,RCN3,RCN4,CIF1,RCN5,ENSE1,BAMY1,MIK,S11,IFR,SLG,SK2(T)(SCL, FGR)	ao,rcn3,rcn4,Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,rcn5,En Se1, EnSe1(t), EnSe1,betaAmy1, BetaAmy1, Amy10,mi k, mik, mi2,S11(t),Ifr, Rf16, Ifr1,slg, Rurm1, Urm1,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
20365		Kinoshita, T.	I. Registration of new gene symbols.	RGN	10	7-10	1993	SE4,GA12,SHP5,MLS3,S10,S8,GA11,S9,MAN,SPL10,SE5	Se4(t),ga12,shp5(t), shp5,mls3,,,ga11,,Man,spl10,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
20366		Nagato, Y. & A. Yoshimura	I. Registration of new gene symbols.	RGN	15	13	1998	SE9	Se9
20367		Kinoshita, T.	I. Registration of new gene symbols.	RGN	9	2-4	1992	LKG,LKI2,TMS2,TMS1,GAL,TMS2,S7	Lk g,lki2,tms2, ms81, tms-2,tms1 (TGMS), ms80, tms-1, tms(t),gal(lt), It-m, lt, gal,tms2,S7
20368		Kinoshita, T.	II. Registration of new gene symbols.	RGN	6	2-6	1989	BPH9,BPH8,XA17,XA18,SH2,CHL10,GDH1,SD7,ENP1,D60,SH1,XA16,S6	Bph9, BPH9/26,bph8,Xa17,Xa18,sh2,chl10,Gdh1,sd7, sd7(t),Enp1*, Enp1,d60 (sd(t)), sd(t), dwf41, d60,sh1,Xa16,
20369		Iwata, N.	I. Registration of new gene symbols.	RGN	14	9-11	1997	HWD2,HWD1,PI18,PI19	hwd2,hwd1,Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi19(t), Pi14, Pi19
20370		Nagato, Y. & A. Yoshimura	I. Registration of new gene symbols.	RGN	16	8-9	1999	PB1,GA14,PI21	Pb1, Pbst, RMG58.,ga14,pi21, rMg40
20371		Kinoshita, T.	I. Registration of new gene symbols.	RGN	5	3-6.	1988	XA13,D59,XA14,LG,ST5,CHL9,CHL8,AMP4	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,d59(t), dwf40, d59,Xa14,lg,st5,chl9,chl8,Amp4
20372		Kinoshita, T.	II. Registration of new gene symbols.	RGN	7	16-19.	1990	XA19,ST6,XA20,SPR3	xa19,st6(t), st6,xa20,Spr3(t), Spr3
20373		Kinoshita, T.	II. Registration of new gene symbols.	RGN	4	3-7.	1987	AE2,DU5,LKI1,Z6,RCN2,LAM,DU4,ESP1,ESP3,ESP2	ae2(t), ae2,du5,lk i1, lki1, lk-i-1,z6,rcn2,lam(t), lam,du4,esp1(rsp1), rsp1, esp1,esp3(rsp3), rsp3, esp3,esp2(rsp2), rsp2, esp2, PDIL1-1
20374		Kinoshita, T.	I. Registration of new gene symbols.	RGN	8	2-3.	1991	SD1,DW3,GLC,CTS2	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,dw3,glc,Cts2(t), Cts2
20375		Sato, Shigetoshi	3. Gene symbols for heading behavior.	RGN	3	10-12.	1986	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
20376		Aida, T., S. Niikura & I. Takamure	Genic interaction between lhs (leafy hull sterile) and some mutant genes related to spikelet formation.	RGN	14	50-52	1997	MORI1,LHS1	mori1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
20377		Taniguchi, M. & Y. Futsuhara	A dense panicle mutant producing adventitious roots from spikelets.	RGN	5	113-114	1988	DN3	dn3
20378		Nagato, Y. and A. Yoshimura	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. Registration of new gene symbols.	RGN	17	6-7	2000	SE11,SE12,SE10	se11, se11(t)*,Se12,se10, se10(t)*
20379		Tsai, K.H.	Genetic analysis for heading time in tropical rice strains.	RGN	16	55-57	1999	SE11,SE10	se11, se11(t)*,se10, se10(t)*
20380		Fukuoka, S. & K. Okuno	QTL analysis for field resistance to rice blast using RFLP markers.	RGN	14	98-99	1997	PI21	pi21, rMg40
20381		Wang, W.M. and L.H. Zhu	A stamenless 1 rice mutant, transforms stamens partially into pistils.	RGN	17	20-21	2000	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB
20382		Mukohhata, M., M. Ashikari, M. Miwa, T. Sasaki, Y. Nagato, H. Kitano and M. Matsuoka	High resolution mapping of a rice gene affecting shoot organization, SHO1.	RGN	17	24-26	2000	SHO1	sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
20383		Satoh, N. and Y. Nagato	SHOOTLESS 2 gene is required for both initiation and maintenance of shoot apical meristem in rice.	RGN	17	26-28	2000	SHL2	shl2, SHL2, sh2, OsRDR6, RDR6
20384		Ikeda, K., N. Nagasawa and Y. Nagato	ABERRANT PANICLE ORGANIZATION 1 gene regulates meristem identity in reproductive phase.	RGN	17	31-34	2000	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393
20386		Yoshimura, A. & Y. Nagato	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups.	RGN	18	6-8	2001	EUI1,GRH4,BPH11,EUI2,BPH12,XA23	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,Grh4,bph11,eui2,bph12,Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20387		Zhang, Q., S.C. Lin, B.Y. Zhao, C.L. Wang, W.C. Yang, Y.L. Zhou, D.Y. Li, C.B. Chen, & L.H. Zhu	Identification and tagging a new gene for resistance to bacterial blight (Xanthomonas oryzae pv. oryzae) from O. rufipogon.	RGN	15	138-142	1998	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20388		Yang, R.C., S.L. Yang, R.H. Huang & Q.P. Zang	A new gene for elongated-uppermost-internode.	RGN	16	41-43	1999	EUI2	eui2
20389		Suzuki, Y., K. Ise and T. Nagamine	Geographical variation of the gene, (lox3(t)), causing lipoxygenase-3 deficiency in Asian rice varieties.	RGN	17	13-14	2000	LOX3,LOX1,LOX2	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4,LOX-1,LOX-2
20390		Yang, S.L., H.L. Ma, Q.P. Xue, B. Wang & R.C. Yang	Tagging of an elongated-uppermost-internode gene eui2 using microsatellite markers.	RGN	17	14-15.	2000	EUI2	eui2
20391		Tanabe, S.B., M. Ashikari, M. Yano, A. Yoshimura, M. Matsuoka, H. Kitano, T. Asahi and Y. Iwasaki	High resolution map of dwarf mutant gene, dwarf11 of rice.	RGN	17	18-19	2000	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
20392		Onishi, K., I. Takamure and H. Nakashima	The tiller development affected by d17 (tillering dwarf) in relation to the yield stability	RGN	17	22-24	2000	D17	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17
20393		Asai, K., N. Satoh, H. Sasaki, H. Satoh & Y. Nagato	A heterochronic gene associated with juvenile-adult phase change in rice.	RGN	17	34-37.	2000	MORI1	mori1
20394		Chen, L.J., D.S. Lee and H.S. Suh	Identification of Ldh isozyme locus in rice (Oryza sativa complex).	RGN	17	39-40.	2000	LDH*	Ldh*, Ldh1
20395		Monna, L., Y. Sano & M. Yano	Genetic mapping of a rice photoperild sensitivity gene Enhancer-Se1.	RGN	17	40-42.	2000	ENSE1	En Se1, EnSe1(t), EnSe1
20396		Mukohhata, M., M. Ashikari, H. Kitano, Y. Nagato & M. Matsuoka	High resolution mapping of SHOOT ORGANIZATION 2 gene, SHO2.	RGN	18	17-19.	2001	SHO2	sho2
20397		Sumikura, T. and Y. Nagato	A mutant showing pleiotropic abnormalities in root, shoot and flower development in rice.	RGN	18	19-21.	2001	FIB	fib, OsTAR2, TAR2
20398		Kawakatsu, T., J-I. Itoh and Y. Nagato	PLASTOCHRON2 gene regulates the plastochron and the duration of vegetative phase.	RGN	18	21-24.	2001	PLA2	pla2, pla2(pla2-1, pla2-2), plt2, LHD2
20399		Yamaki, S. and Y. Nagato	GYPSY EMBRYO gene controls embryo position by regulating integument development.	RGN	18	24-26.	2001	GEM	gem
20400	0	Kubo, T., N. Takano-Kai and A. Yoshimura	RFLP mapping of genes for long kernel and awn on chromosome 3 in rice.	RGN	18	26-28.	2001	AN5,LK3	An5(t), an5, An5(t)*,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
20401		Kurakazu, T., Sobrizal and A. Yoshimura	RFLP mapping of genes for awn on chromosomes 4 and 5 in rice using Oryza meridionalis introgression lines.	RGN	18	28-30.	2001	AN7,AN8	An7(t), An7(t)*,An8(t), An8(t)*, An8
20402		Nishimura, A., Y. Sato, H. Kitano, Y. Nagato, M. Ashikari, and M. Matsuoka	Mapping of the rice MORI1 gene.	RGN	18	30-31.	2001	MORI1	mori1
20403		Ito, M., Y. Sato, H. Kitano, Y. Nagato, M. Ashikari, & M. Matsuoka	Mapping of the ABERRANT REGIONALIZATION OF EMBRYO 1 gene, ARE1, by CAPS analysis.	RGN	18	31-32.	2001	ARE1	are1
20404		Hu, F.-Y., D.-Y. Tao, P. Xu, J. Li, Y. Yang, E. Sacks, K. McNally, T.S. Cruz, J. Zhou, Z.-K. Li	Two dominant complementary genes controlling rhizomatous expression in Oryza longistaminata.	RGN	18	34-36.	2001	RHZ3,RHZ2	Rhz3,Rhz2
20405		Maekawa, M., A. Tanaka, N. Shikazono, & Y. Hase	Somatic reversion induced by ion beam irradiation in stable yellow leaf mutant of rice.	RGN	18	36-39.	2001	YL	yl*
20406		Yokoo, M. and M. Kato	Genetic female sterility as a tool for analyzing the mechanism of photosynthate translocation in rice.	RGN	18	41-42.	2001	FES2,FES1	fes2,fes1
20407		Kubo, T. and A. Yoshimura	Linkage analysis of an F1 sterility gene in Japonica/Indica cross of rice.	RGN	18	52-54.	2001	S26	S26(t), S26(t)*
20408		Kubo, T., M. Eguchi and A. Yoshimura	A new gene for F1 pollen sterility located on chromosome 12 in Japonica/Indica cross of rice.	RGN	18	54-55.	2001	S25	S25(t), S25(t)*
20409		Kubo, T., T. Kuchiishi and A. Yoshimura	Identification of a new gene for spotted leaf found in Japonica-Indica hybrid population of rice.	RGN	18	55-57.	2001	SPL12	spl12(t), spl12(t)*
20410		Sanchez, P.L., Sobrizal, K. Ikeda, H. Yasui & A. Yoshimura	RFLP mapping of genes controlling heading date found in Oryza glumaepatula Steud. introgression lines in rice.	RGN	18	57-59.	2001	EF1,qLHD3(t)	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,qlhd3(t)
20411		Sobrizal, Y. Matsuzaki and A. Yoshimura	Mapping of a gene for pollen semi-sterility on chromosome 8 of rice.	RGN	18	59-61.	2001	S27	S27(t), S27(t)*
20412		Kubo, T. and A. Yoshimura	Linkage analysis of a gene responsible for F2 weakness in Japonica/Indica cross of rice.	RGN	16	64-65.	1999	HWE1	hwe1(t)*, hwe1
20413		Sobrizal, C. Tanaka, H. Yasui and A. Yoshimura	Mapping of a gene for F2 weakness on chromosome 4 of rice.	RGN	18	61-63.	2001	HWF1	hwf1(t), hwf1(t)*, hwf1
20414		Gao, D.Y., Z.G. Xu, Z.Y. Chen, L.H. Sun, Q.M. Sun, F. Lu, B.S. Hu, Y.F. Liu and L.H. Tang	Identification of a new gene for resistance to bacterial blight in a somaclonal mutant HX-3 (indica).	RGN	18	66-68.	2001	XA25	Xa25(t), Xa25*, Xa25, Xa-25(t)
20415		Zhuang, J.-Y., J.-L. Wu, Y.-Y. Fan, Z.M. Rao and K.-L. Zheng	Genetic drag between a blast resistance gene and QTL conditioning yield trait detected in a recombinant inbred line population in rice.	RGN	18	69-70.	2001	PI24,PI25	Pi24, Pi24(t),Pi25, Pi25(t)
20416		Zhang, Q., C.L. Wang, K.J. Zhao, Y.L. Zhao, V.C. Caslana, X.D. Zhu, D.Y. Li and Q.X. Jiang	The effectiveness of advanced rice lines with new resistance gene Xa23 to rice bacterial blight.	RGN	18	71-73.	2001	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
20417		Yoshimura, A. and Y. Nagato	Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups.	RGN	19	5-6.	2002	WEF1,PI24,PI25	wEfl,Pi24, Pi24(t),Pi25, Pi25(t)
20418		Tao, D., P. Xu, J. Li, Y.Yang, F. Hu, J. Zhou, X.L. Tan and M. Jones	Inheritance of japonica upland rice restoration lines and their restoration gene mapping.	RGN	19	23-27.	2002	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
20419		Inukai, Y., Y. Shibata, H. Kitano, M. Ashikari and M. Matsuoka	Mapping of the CROWN ROOTLESS1 gene, CRL1, by CAPS analysis.	RGN	19	29-31.	2002	CRL1	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
20420		Sobrizal and A. Yoshimura	Mapping of genes for slender kernel using Oryza glumaepatula introgression lines in rice.	RGN	19	40-42.	2002	SK1,SK2	sk1(t)**, slk1, sk1*,Sk2(t)**, Slk2, Sk2*
20421	0	Sato, K., M. Ashikari, K. Tamura, K. Mase, H. Kitano, M. Matsuoka and Y. Katayama	High resolution map of DWARF 50 (D50) in rice.	RGN	19	31-33.	2002	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
20422		Yamaki, S. and Y. Nagato	OVULELESS gene regulates the initial step of ovule development in rice.	RGN	19	33-35.	2002	OVL	ovl
20423		Obara, M.K., E. Hayashida, H. Satoh and Y. Nagato	ADAXIAL SNOWY LEAF gene required for the chloroplast development in adaxial mesophyll cells.	RGN	19	36-38.	2002	ADS	ads
20424		Sobrizal and A. Yoshimura	Mapping of a gene for notched kernel found in backcross progeny of Oryza sativa L. and Oryza glumaepatula Steud.	RGN	19	38-40.	2002	NK2	nk2(t),  nk2
20425		Pavithran, K.	Inheritance and linkage relationship of notched kernel in rice (Oryza sativa).	Can. J. Genet. Cytol.	19	483-486.	1977	NK	Nk
20426		Ikeda, K., N. Nagasawa and Y. Nagato	ABERRANT PANICLE ORGANIZATION 1 gene regulates the meristem organization in rice.	RGN	19	42-45.	2002	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393
20427		Nagasawa, N., Y. Nagato and H. Sakai	Physical mapping of the GIANT EMBRYO gene in a highly recombinogenic region of chromosome 7.	RGN	19	45-47.	2002		
20429		Ushijima, T., T. Kumamaru, M. Ogawa and H. Satoh	Mapping of esp1 gene for cystein-poor (CysP) prolamin decreased mutant in rice.	RGN	19	64-65.	2002	ESP1	esp1(rsp1), rsp1, esp1
20430		Nagai, Y.S., Sobrizal, P.L. Sanchez, T. Kurakazu, K. Doi and A. Yoshimura	Sh3, a gene for seed shattering, commonly found in wild rices.	RGN	19	74-76.	2002	SH3	Sh3
20431		Nagai, Y.S., K. Doi and A. Yoshimura	A seed shattering gene, Sh3, and its inhibitor gene found in an African cultivated rice, Oryza glaberrima, Steud.	RGN	19	76-77.	2002	SH3,ISH3	Sh3,iSh3, iSh3(t)
20432		Sanchez, P.S., T. Kurakazu, C. Hirata, Sobrizal and A. Yoshimura	Identification and mapping of seed shattering genes using introgression lines from wild rice species.	RGN	19	78-80.	2002	SH5-GLUM,SH6-MER	Sh5-glum,Sh6-mer
20433		Sobrizal, Y. Matsuzaki and A. Yoshimura	Mapping of pollen semi-sterility gene, S28(t), on rice chromosome 4.	RGN	19	80-82.	2002	S28	S28(t)
20434		Sobrizal, Y. Matsuzaki, P.L. Sanchez, K. Ikeda and A. Yoshimura	Identification of a gene for male gamete abortion in backcross progeny of Oryza sativa and Oryza glumaepatula.	RGN	17	59-61.	2000	S22	S22(t)
20435		Sobrizal, Y. Matsuzaki, P.L. Sanchez, K. Ikeda and A. Yoshimura	Mapping of F1 pollen semi-sterility gene found in backcross progeny of Oryza sativa and Oryza glumaepatula Steud.	RGN	17	61-63.	2000	S28,S23	S28(t),S23(t)
20436		Kubo, T., M. Eguchi and A. Yoshimura	A new gene for F1 pollen sterility in Japonica/Indica cross of rice.	RGN	17	63-64.	2000	S24	S24(t), S24(t)*, Sb, F5-Du
20437		Lee, K.S. and G.S. Khush	Genetic analysis of resistance to bacterial blight, Xanthomonas oryzae pv. Oryzae, in rice.	RGN	17	72-73.	2000	XA7	Xa7
20438		Khush, G.S. and E.R. Angeles	A new gene for resistance to race 6 of bacterial blight in rice, Oryza sativa L.	RGN	16	92-93.	1999	XA24	xa24(t)*, xa24
20439		Lee, K.S., E.R. Angeles and G.S. Khush	Inheritance of resistance to race 6 of bacterial blight in rice.	RGN	17	73-74.	2000	XA24,XA13	xa24(t)*, xa24,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
20440		Wang, W.M., W.X, Zhai, G.H. Jiang, X.W. Chen, X.B. Li and L.H. Zhu	Construction of a BAC contig containing Xa4 locus on Chromosome 11.	RGN	17	74-76.	2000	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
20441		Kaku, H.	The additive effect of bacterial blight resistance genes Xa1 and Xa4 in rice.	RGN	17	78-80.	2000	XA4,XA1	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa1(Xe), Xe, Xa1, Xa-1
20442		Kumar, A., S. Bhandarkar, D.J. Pophlay and M.N. Shrivastava	A new gene for gall midge resistance in rice accession Jhitpiti.	RGN	17	83-84.	2000	GM8	Gm8(t), Gm8
20443		Kumar, A., M.N Shrivastava and B.C. Shukla	A new gene for resistance to gall midge in rice cultivar RP2333-156-8.	RGN	16	85-87.	1999	GM7	Gm7*, Gm7
20444		Murata, K., M.Fujiwara, H. Murai, S. Takumi, N. Mori and C. Nakamura	Bph9, a dominant brown planthopper resistance gene, is located on the long arm of rice chromosome 12.	RGN	17	84-86.	2000	BPH9	Bph9, BPH9/26
20445		Su, C.C., H.Q. Zhai, X.N. Cheng and J.M. Wan	Detection and analysis of QTLs for resistance to brown planthopper, Nilaparvata lugens (Stal), in rice (Oryza sativa L.), using backcross inbred lines.	RGN	19	88-90.	2002	qBPH-12	qBPH-12
20446		Singh, K., Y. Vikal, S. Singh, H. Leung, H.S. Dhaliwal and G.S. Khush	Mapping of bacterial blight resistance gene xa8 using microsatellite markers.	RGN	19	94-97.	2002	XA8	xa8
20447		Ichitani, K., Y. Okumoto, M. Teraishi, T. Nakazaki, H. Yamagata and T. Tanisaka	Development of a new experimental line carrying a mutable slender glume gene, slg, in rice.	RGN	19	101-103.	2002	SLG	slg, Rurm1, Urm1
20448		Fujita, D., A. Yoshimura and H. Yasui	Detection of QTLs associated with antibiosis to green rice leafhopper, Nephotettix cincticeps Uhler, in four Indica rice varieties.	RGN	19	90-91.	2002	qGRH-2,qGRH-4,qGRH-5,qGRH-3,qGRH-11,qGRH-6	qGRH-2,qGRH-4,qGRH-5,qGRH-3,qGRH-11,qGRH-6
20449		Yazawa, S., H. Yasui, A. Yoshimura and N. Iwata	RFLP mapping of genes for resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice cultivar DV85 using near isogenic lines. (Japanese with English summary)	Sci. Bull. Fac. Agr. Kyushu Univ.	52	169-175.	1998	GRH2	Grh2
20450		Tamura, K., Y. Fukuta, M. Hirae, S. Oya, I. Ashikawa and T. Yagi	Mapping of Grh1 locus for green rice leafhopper resistance in rice using RFLP markers.	Breeding Science	49	11-14.	1999	GRH1	Grh1
20451		Ito, M., Y. Sato, N. Nagasawa, H. Kitano, Y. Nagato and M. Matsuoka	Mapping of two SHOOTLESS genes, SHL1 and SHL2, by RFLP analysis.	RGN	16	39-41.	1999	SHL1,SHL2	shl1, sh1,shl2, SHL2, sh2, OsRDR6, RDR6
20452		Doi, K., K. Taguchi and A. Yoshimura	RFLP mapping of S20 and S21 for F1 pollen semi-sterility found in backcross progeny of Oryza sativa and O. glaberrima.	RGN	16	65-68.	1999	S20,S21	S20*, Hst43,S21*, Hst44
20453		Kubo, T, and A. Yoshimura	Complementary genes causing F2 sterility in Japonica/Indica cross of rice.	RGN	16	68-70.	1999	HSA1B,HSA1A,HSA2	hsa1(t), s(t), hst49,hsa1(t), s(t), hst49,hsa2(t)*, hsa2(t), hst50
20454		Taguchi, K., K. Doi and A. Yoshimura	RFLP mapping of S19, a gene for F2 pollen semi-sterility found in backcross progeny of Oryza sativa and O. glaberrima.	RGN	16	70-71	1999	S19	
20455		Zhong, D.B., S.B. Yu, J.L. Xu, L.J. Luo and Z.K. Li	QTLs for grain shattering in the Lemont/Teqing RI population.	RGN	16	71-74.	1999	qSH-1-1(t) (QSh1),qSH-2-1(t) (QSh2),qSH-3-1(t) (QSh3),qSH-4-1(t) (QSh4),qSH-5-1(t) (QSh5),qSH-9-1(t) (QSh9)	qSH-1-1(t) (QSh1),qSH-2-1(t) (QSh2),qSH-3-1(t) (QSh3),qSH-4-1(t) (QSh4),qSH-5-1(t) (QSh5),qSH-9-1(t) (QSh9)
20456		Sobrizal, K. Ikeda, P.L. Sanchez and A. Yoshimura	RFLP mapping of a seed shattering gene on chromosome 4 in rice.	RGN	16	74-75.	1999	SH3,SH	Sh3,Sh(t)*, Sh6
20457		Angeles, E.R. and G.S. Khush	A new gene for resistance to green leafhopper, Nephotettix virescens (Distant) in rice.	RGN	16	93-94.	1999	GLH9	Glh9(t)*, Glh9
20458		Yamasaki, M., A. Yoshimura and H. Yasui	Idenfification of a gene ovicidal to whitebacked planthopper, Sogatella furcifera Horvath in rice, Oryza sativa L.	RGN	16	94-96.	1999	OVC	Ovc, Ovc(t)
20459		Satoh, H., W.X. Li, Y. Takemoto, T. Ito, T. Kumamaru, L.Q. Qu and M. Ogawa	gulp4 controlling a 57H character was located on chromosome 12 in rice.	RGN	16	98-100.	1999	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a
20460		Nakazaki, T., K. Kitaura, N. Takei, Y. Fukuta and H. Ikehashi	Detection of genetic locus of self-incompatibility (S) thioredoxin like gene in rice (Oryza sativa L) using single nucleotide polymorphism (SNP).	RGN	16	110-113.	1999	STRN1	S-trn1(t)*, Strn-l(t)*, Strn, S-trn-l
20461		Chang, S.H., M.S. Chang, N.T. Hu and K.H. Tsai	Repeating backcrosses for induced earliness gene, Ef1-x.	RGN	17	42-44.	2000	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20462		Tsai, K.H.	ef1 like plants produced from crosses between Ef1 lines.	RGN	17	45-46.	2000	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20463		Maekawa, M. T. Rikishi, T. Matsuura and K. Noda	A gene for variegated albino linked to lg on chromosome 4.	RGN	15	107-108.	1998	ALV	al-v(t)*, yl, al11
20464		Maekawa, M., T. Rikishi, T. Matsuura and K. Noda	Non-segregation of albino character in rice plant heterozygous for variegated albino.	RGN	17	51-54.	2000	ALV	al-v(t)*, yl, al11
20465		Zhuang, J.Y., Y.Y. Fan, J.L. Wu, Y.W. Xia and K.L. Zheng	Mapping major and minor QTL for rice CMS-WA fertility restoration.	RGN	17	56-59.	2000	qRF-1(t),qRF-7(t),qRF-10(t),qRF-11(t)	qRf-1(t),qRf-7(t),qRf-10(t),qRf-11(t)
20466		Kaku, H. and T. Ogawa	The relationship between browning reaction and bacterial blight resistance gene Xa3 in rice.	RGN	17	76-78.	2000	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
20467		Yamasaki, M., A. Yoshimura and H. Yasui	Mapping of QTLs affecting egg mortality of whitebacked planthopper, Sagatella furcifera Horvath in rice, Oryza sativa L.	RGN	17	87-89.	2000	qOVA5-1,qOVA1-3,qOVA-5-2(t)	qOVA5-1,qOVA-5-1(t),qOVA1-3,qOVA-1-3(t),qOVA-5-2(t)
20468		Nakazaki, T., N. Ihara, Y. Fukuta and H. Ikehashi	Abundant polymorphism in the flanking regions of two loci for basic PR-1 proteins as markers for indica-japonica differentiation in rice (Oryza sativa L.).	Breeding Science	50	173-181.	2000	RPR1-1,RPR1-2	Rpr1-1(t),Rpr1-2(t), Rpr1-2
20469		Fujii, K., Y. Hayano-Saito, K. Saito, N. Sugiura, N. Hayashi, T. Tsuji, T. Izawa and M. Iwasaki	Identification of a RFLP marker tightly linked to the panicle blast resistance gene, Pb1, in rice.	Breeding Science	50	183-188.	2000	PB1	Pb1, Pbst, RMG58.
20470		Dung, L.-V., I. Mikami, E. Amano and Y. Sano	Study on the response of dull endosperm 2-2, du2-2, to two Wx alleles in rice.	Breeding Science	50	215-219.	2000	DU2	du2
20471		Lu, C., J. Zou and H. Ikehashi	Gamete abortion locus detected by segregation distortion of isozyme locus Pgi1 in indica-japonica hybrids of rice (Oryza sativa L.).	Breeding Science	50	235-239.	2000	GA14	ga14
20472		Dong, Y., W. Dong, S. Shi and Q. Jin	Identification and genetic analysis of a thermo-sensitive seedling-color mutant in rice (Oryza sativa L.).	Breeding Science	51	1-4.	2001	TSC1	tsc1(t), tsc-1, TSC-1
20473		Kawaguchi, M., K. Murata, T. Ishii, S. Takumi, N. Mori and C. Nakamura	Assignment of a brown planthopper (Nilaparvata lugens Stal) resistance gen bph4 to the rice chromosome 6.	Breeding Science	51	13-18.	2001	BPH4	bph4
20474		Maekawa, M., T. Sato, T. Kumagai and K. Noda	Differential responses to UV-B irradiation of three near isogenic lines carrying different purple leaf genes for anthocyanin accumulation in rice (Oryza sativa L.).	Breeding Science	51	27-32.	2001	PL	Pl, Pl1
20475		Inukai, Y., M. Miwa, Y. Nagato, H. Kitano and A, Yamauchi	Characterization of rice mutants deficient in the formation of crown roots.	Breeding Science	51	123-129.	2001	CRL1,CRL2	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,crl2*, crl2
20476		Inukai, Y., M. Miwa, Y. Nagato, H. Kitano and A. Yamauchi	RRL1, RRL2 and CRL2 loci regulating root elongation in rice.	Breeding Science	51	231-239.	2001	CRL2,RRL1,RRL2	crl2*, crl2,rrl1(t), rrl1,rrl2(t), rrl2
20477		Miyamoto, M., M. Yano and H. Hirasawa	Mapping of quantitative trait loci conferring blast field resistance in the Japanese uplant rice variety Kahei.	Breeding Science	51	257-261.	2001	qBFR4-1(t),qBFR4-2(t)	qBFR4-1(t),qBFR4-2(t)
20478		Miura, K., S.Y. Lin, M. Yano and T. Nagamine	Mapping quantitative trait loci controlling low temperature germinability in rice (Oryza sativa L.).	Breeding Science	51	293-299.	2001	qLTG-2-1(t),qLTG-4-1(t),qLTG-5(t),qLTG-11(t),qLTG-4-2(t)	qLTG-2-1(t),qLTG-4-1(t),qLTG-5(t),qLTG-11(t),qLTG-4-2(t)
20479		Hirano, H. and Y. Sano	Enhancement of Wx gene expression and the accumulation of amylose in response to cool temperatures during seed development in rice.	Plant Cell Physiol.	39	807-812.	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20480		Wu, C.Y., T. Adachi, T. Hatano, H. Washida, A. Suzuki and F. Takaiwa	Promoters of rice seed storage protein genes direct endosperm-specific gene expression in transgenic rice.	Plant Cell Physiol.	39	885-889.	1998	GLB1,GLUA3,GLU7	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7
20481	10555303	Wang, A.Y., M.H. Kao, W.H. Yang, Y. Sayion, L.F. Liu, P.D. Lee and J.C. Su	Differentially and developmentally regulated expression of three rice sucrose synthase genes.	Plant Cell Physiol.	40	800-807.	1999	RSUS2,RSUS3,RSUS1	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2
20482	10805588	Hirano, K., T. Teraoka, H. Yamanaka, A. Harashima, A. Kunisaki, H. Takahashi and D. Hosokawa	Novel mannose-binding rice lectin composed of some isolectins and its relation to a stress-inducible salT gene.	Plant Cell Physiol.	41	258-267.	2000	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
20484	10965945	Terada, R., M. Nakajima, M. Isshiki, R.J. Okagaki, S.R. Wessler and K. Shimamoto	Antisense Waxy gene with highly active promoters effectively suppress Waxy gene expression in transgenic rice.	Plant Cell Physiol.	41	881-888.	2000	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20485	8673344	Nakagawa, H., E. Ohkura, K. Ohmiya and T. Hattori	The seed-specific transcription factor VP1 (OSVP1) is expressed in rice suspension-cultured cells.	Plant Cell Physiol.	37	355-362.	1996	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
20486	11917085	Miyoshi, K., Y. Kagaya, Y. Ogawa, Y. Nagato and T. Hattori	Temporal and spatial expression pattern of the OSVP1 and OSEM genes during seed development in rice.	Plant Cell Physiol.	43	307-313.	2002	EM,VP1	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
20487	12040096	Hayama, R., T. Izawa and K. Shimamoto	Isolation of rice genes possibly involved in the photoperiodic control of flowering  by a fluorescent differential display method.	Plant Cell Physiol.	43	494-504.	2002	SE5,GI	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,OsGI, Gi, Os-GI
20489	12091719	Ma, J.F., R. Shen, Z. Zhao, M. Wissuwa, Y. Takeuchi, T. Ebitani and M. Yano	Response of rice to Al stress and identification of quantitative trait loci for Al tolerance.	Plant Cell Physiol.	43	652-659.	2002	qAL-1(t),qAL-2(t),qAL-6(t)	qAl-1(t),qAl-2(t),qAl-6(t)
20491	12354914	Ikeda, A., Y. Sonoda, P. Vernieri, P. Perata, H. Hirochika and J. Yamaguchi	The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level.	Plant Cell Physiol.	43	974-979.	2002	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
20493	12668770	Biswas, K.K., R. Neumann, K. Haga, O. Yatoh and M. Iino	Photomorphogenesis of rice seedlings: a mutant impaired in phytochrome-mediated inhibition of coleoptile growth.	Plant Cell Physiol.	44	242-254.	2003	CPM1	cpm1(t)
20495	11828031	Kyozuka, J. and K. Shimamoto	Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.	Plant Cell Physiol.	43	130-135.	2002	RAG	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1
20496		Nakamura, H., Y. Tokairin, S. Hidaka, S. Ejiri and K. Tsutsumi	Structural variations of the aldolase gene region in different rice cultivars.	Breeding Science	49	33-37.	1999	ALDCA,ALDC2,ALDP,ALDC1	AldC-a,AldC-2,Aldo, OsALDO, ALDO,AldC-1
20497		Ito, J.I. and Y. Nagato	A mutation associated with phyllotaxy and leaf blade-sheath boundary in rice.	RGN	15	90-93	1998	DEC	dec*, dec
20498		Kinae, T., H. Satoh, H. Kitano and Y. Nagato	A multiple radicle1 mutation affects the number of radicles and the vegetative growth in rice.	RGN	15	93-96	1998	MR1	mr1*, mr1
20499		Itoh, Y., I. Takamure and S. Shibata	Developmental timing of phenotypic expression in a mutant with twisted leaf blade.	RGN	15	96-98.	1998	TW	tw(t)*(tl), tl, tw
20500		Sanchez, A.C. and G.S. Khush	New gene for extra glume character in rice.	RGN	15	98-99	1998	EG2	eg2(t), eg2
20501		Sanchez, A.C. and G.S. Khush	A gene for collarless phenotype in rice.	RGN	15	99-100	1998	LG,PL2,COL	lg,pl2(t), pl2,col
20502		Kumar, A., M.N. Shrivastava and R.K. Sahu	Genetic analysis of ARC5984 for gall midge resistance - a reconsideration.	RGN	15	142-143	1998	GM3,GM5	gm3*, gm3,Gm5*, Gm5
20503		Cai, H.W. and H. Morishima	Mapping QTLs for heading behavior using RI population derived from a cross between wild and cultivated rice strains.	RGN	15	144-146	1998	qDTH-2-1,qDTH-2-2,qDTH-3-1,qDTH-1-1,qDTH-4-1,qDTH-4-2,qDTH-5-1,qDTH-5-2,qDTH-6-1,qDTH-6-2,qDTH-8,qDTH-9-1,qDTH-11-1,qDTH-11-2,qDTH-12,qDTH-9-2,qBVP-3-1,qBVP-1,qBVP-3-2,qBVP-4,qBVP-5-2,qBVP-8,qBVP-11,qBVP-5-1,qPSP-6(Se1?),qPSP-1,qPSP-11,qPSP-8	qDTH-2-1,qDTH-2-2,qDTH-3-1,qDTH-1-1,qDTH-4-1,qDTH-4-2,qDTH-5-1,qDTH-5-2,qDTH-6-1,qDTH-6-2,qDTH-8,qDTH-9-1,qDTH-11-1,qDTH-11-2,qDTH-12,qDTH-9-2,qBVP-3-1,qBVP-1,qBVP-3-2,qBVP-4,qBVP-5-2,qBVP-8,qBVP-11,qBVP-5-1,qPSP-6(Se1?),qPSP-1,qPSP-11,qPSP-8
20504		Doi, K., K. Taguchi and A. Yoshimura	A new locus affecting high F1 pollen sterility found in backcross progenies of Japonica rice and African rice.	RGN	15	146-148	1998	S18	S18*, Hst39
20505		Doi, K. and A. Yoshimura	RFLP mapping of a gene for heading date in an African rice.	RGN	15	148-149	1998	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20506		Kubo, T. and A. Yoshimura	Linkage analysis of a gene controlling F2 sterility in Japonica/Indica backcrossed progenies of rice.	RGN	15	149-151	1998	HSA1A,HSA1B	hsa1(t), s(t), hst49,hsa1(t), s(t), hst49
20507		Wan, J., H. Ikehashi, M. Sakai, H. Horisue and T. Imbe	Mapping of hybrid sterility gene S17 of rice (Oryza sativa L.)  by isozyme and RFLP markers.	RGN	15	151-154	1998	S17	S17(t)*
20508		Li, Z., A.H. Paterson, S.R.M. Pinson and G.S. Khush	A major gene, Ta1 and QTLs affecting tiller and leaf angles in rice.	RGN	15	154-156	1998	qTA-2,qTA-1,qTA-5,TA1,qTA-8,qLA-1,qLA-3,qFLA-2,qFLA-5,qFLA-6,qFLA-7,qFLA-9	qTA-2,qTA-1,qTA-5,Ta1*, Ta1,qTA-8,qLA-1,qLA-3,qFLA-2,qFLA-5,qFLA-6,qFLA-7,qFLA-9
20509		Nguyen, T.L., G. Zhang, G. Magpantay, S.S. Viramani, N. Huang, D.S. Brar, G.S. Khush and Z.K. Li	PCR-based DNA markers for the WA-CMS fertility restoring gene Rf-3 in rice.	RGN	15	156-158	1998	RF3	Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
20510		Yamaguchi, T., S. Kawasaki, Y. Nagato and H.Y. Hirano	Construction of the BAC contig encompassing the dl locus.	RGN	15	158-160	1998	DL	DL, dl(lop), lop, dl, dl1
20511		Inukai, Y., A. Yamauchi, H. Satoh, Y. Nagato and H. Kitano	Genetic analysis of induced rice developmental mutants showing radicleless and crown rootless.	RGN	15	88-90	1998	RAL1,CRL1,CRL2,RAL2	ral1*, ral1,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,crl2*, crl2,ral2*, ral2
20512		Kikuchi, K., K.T. Yoshida, Y. Nagato and H.Y. Hirano	Chromosomal location of the OsNAC genes.	RGN	15	160-161	1998	NAC3,NAC4,NAC5,NAC6	OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
20513		Kikuchi, K., K.T. Yoshida, M. Uekuchi-Tanaka, M. Matsuoka, Y. Nagato and H.Y. Hirano	Molecular characterization of the rice OsNAC genes.	RGN	14	125-126	1997	NAC4,NAC3,NAC5,NAC6	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
20514		Miyoshi, K., T. Hattori and Y. Nagato	Expression pattern of OSVP1 in developing rice seed.	RGN	14	138-141	1997	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
20515		Matsukura, C. and J. Yamaguchi	The first leaf growth promoted by gibberellins in a dwarf mutant of rice.	RGN	14	153-155	1997	D35	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A
20516		Mikami, I., A. Takahashi, Khin-Thidar and Y. Sano	A candidate for C (Chromogen for anthocyanin) gene.	RGN	17	54-56	2000	C	C, Cp, OsC1, Os-C1, OsMyb6, Myb6
20517		Sanchez, P.L., Sobrizal, K. Ikeda, H. Yasui and A. Yoshimura	Linkage analysis of late heading genes using Oryza glumaepatula lines.	RGN	17	46-48	2000	LHD2,LHD1	Lhd2(t),Lhd1(t)
20518	12881500	Sonoda, Y., A. Ikeda, S. Saiki, N. von Wiren, T. Yamaya and J. Yamaguchi	Distinct expression and function of three ammonium transporter genes (OsAMT1;1 - 1;3) in rice.	Plant Cell Physiol.	44	726-734	2003	AMT1;2,AMT1;3,AMT1;1	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
20519		Lin, H., M. Ashikari, U. Yamanouchi, T. Sasaki and M. Yano	Identification and characterization of a quantitative trait locus, Hd9, controlling heading date in rice.	Breeding Science	52	35-41	2002	HD9	Hd9(t), qHD9(t)
20520	10655238	Yamamoto, T., H. Lin, T. Sasaki and M. Yano	Identification of heading date quantitative trait locus Hd6 and characterization of its epistatic interactions with Hd2 in rice using advanced backcross progeny.	Genetics	154	885-891	2000	HD7,HD6	Hd7(t), qHD7(t),Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
20521		Murai, M., I. Takamure, S. Sato, T. Tokutome and Y. Sato	Effects of the dwarfing gene originating from 'Dee-geo-woo-gen' on yield and its related traits in rice.	Breeding Science	52	95-100	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20523		Ashikari, M., A. Sasaki, M. Ueguchi-Tanaka, H. Itoh, A. Nishimura, S. Datta, K. Ishiyama, T. Saito, M. Kobayashi, G.S. Khush, H. Kitano and M. Matsuoka	Loss-of-function of a rice gibberellin biosynthetic gene, GA20 oxidase (GA20ox-2), led to the rice 'Green revolution'.	Breeding Science	52	143-150	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20524		Itoh, H., M. Ueguchi-Tanaka, T. Sakamoto, T. Kayano, H. Tanaka, M. Ashikari and M. Matsuoka	Modification of rice plant height by suppressing the height-controlling gene, D18, in rice.	Breeding Science	52	215-218	2002	D18	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
20526		Murai, M., S. Sato, A. Nagayama, N. Ishii and S. Ihashi	Effects of a major gene Ur1 characterized by undulation of rachis branches on yield and its related traits in rice.	Breeding Science	52	299-307	2002	UR1	Ur1
20527	12558863	Miyamoto, M. and H. Hirasawa	Relationship between RFLP loci with different alleles on chromosome 4 and the levels of blast field resistance in Japanese upland rice varieties.	Breeding Science	53	1-5	2003	qBFR4-1(t),qBFR4-2(t)	qBFR4-1(t),qBFR4-2(t)
20528		Lin, H., Z.W. Liang, T. Sasaki and M. Yano	Fine mapping and characterization of quantitative trait loci Hd4 and Hd5 controlling heading date in rice.	Breeding Science	53	51-59	2003	HD5,HD4	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,Hd4(t), qHD4(t), qHD4
20529		Tada, Y., H. Akagi, T. Fujimura and T. Matsuda	Effect of an antisense sequence on rice allergen genes comprising a multigene family.	Breeding Science	53	61-67	2003	RA	RA(t)
20532		Sharma, R.N., B.S. Gill, T. Sasaki, G. Galiba, J. Sutka, D.A. Laurie and J.W. Snape	Comparative mapping of the wheat chromosome 5A Vrn-A1 region with rice and its relationship to QTL for flowering time.	Theor. Appl. Genet.	97	103-109	1998	HD6	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
20533		Fukuoka, S., H. Namai and K. Okuno	RFLP mapping of the genes controlling hybrid breakdown in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	446-449	1998	HWD2,HWD1	hwd2,hwd1
20535		Rajyashri, K.R., S. Nair, N. Ohmido, K. Fukui, N. Kurata, T. Sasaki and M. Mohan	Isolation and FISH mapping of Yeast Artificial Chromosomes (YACs) encompassing an allele of the Gm2 gene for gall midge resistance in rice.	Theor. Appl. Genet.	97	507-514	1998	GM2	Gm2, Gm-2, GM-2
20536		Dung, L.V., T. Inukai and Y. Sano	Dissection of a major QTL for photoperiod sensitivity in rice: its association with a gene expressed in an age-dependent manner.	Theor. Appl. Genet.	97	714-720	1998	SE1,SEPAT	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,se-pat(t), sepat(t)*(se), sepat(t)*
20537		Kisaka, H., H. Sano and T. Kameya	Characterization of transgenic rice plants that express rgp1, the gene for a small GTP-binding protein from rice.	Theor. Appl. Genet.	97	810-815	1998	RGP1	rgp1, OsRab11E2
20538		Matsumura, H., T. Takano, G. Takeda and H. Uchimiya	Adh1 is transcriptionally active but its translational product is reduced in a rad mutant of rice (Oryza sativa L.), which is vulnerable to submergence stress.	Theor. Appl. Genet.	97	1197-1203	1998	RAD	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 
20539		Ni, J.J., P. Wu, D. Senadhira and N. Huang	Mapping QTLs for phosphorous deficiency tolerance in rice (Oryza sativa L.).	Theor. Appl. Genet.	97	1361-1369	1998	qPHO-12(t) (PHO(t))	qPHO-12(t) (PHO(t))
20540	7915844	Zhang, Q., B.Z. Shen, X.K. Dai, M.H. Mei, M.A. Saghai Maroof and Z.B. Li	Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice.	Proc. Natl. Acad. Sci. U.S.A.	91	8675-8679	1994	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
20541		He, Y.Q., J. Yang, C.G. Xu, Z.G. Zhang, and Q. Zhang	Genetic bases of instability of male sterility and fertility reversibility in photoperiod-sensitive genic male-sterile rice.	Theor. Appl. Genet.	99	683-693	1999	PMS1,PMS2	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t),pms2*(Pms2,pgms,ms2P), Pms2, ms2-P, pms2*, ms74
20542		Mei, M.H., X.K. Dai, C.G. Xu and Qifa Zhang	Mapping and genetic analysis of the genes for photoperiod-sensitive genic male sterility in rice using the original mutant Nongken 58S.	Crop Sci.	39	1711-1715	1999	PMS3	pms3, LDMAR
20543		Little, P.R., G.B. Hilder, and E.H. Dawson	Differential effect of dilute alkali on 25 varieties of milled white rice.	Cereal Chem.	35	111-126	1958	ALK,qASS-6-1(t)	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,qASS-6-1(t)
20544		He, P., S.G. Li, Q. Qian, Y.Q. Ma, J.Z. Li, W.M. Wang, Y. Chen and L.H. Zhu	Genetic analysis of rice grain quality.	Theor. Appl. Genet.	98	502-508	1999	ALK,WX1,qAC-5-1(t) (qAC-5),qGC-2-1(t) (qGC-2),qGC-7,qASS-6-1(t),qPGWC-8,qPGWC-12,qSWC-3	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,qAC-5-1(t) (qAC-5),qGC-2-1(t) (qGC-2),qGC-7,qASS-6-1(t),qPGWC-8,qPGWC-12,qSWC-3
20545	4771843	Cagampang, G.B., C.M. Perez and B.O. Juliano	A gel consistency test for eating quality of rice.	J. Sci. Food Agric.	24	1589-1594	1973	qGC-2-1(t) (qGC-2),qGC-7	qGC-2-1(t) (qGC-2),qGC-7
20546		Huq, E., S. Harrington, M.A. Hossain, F. Wen, S.R. McCouch and T.K. Hodges	Molecular characterization of pdc2 and mapping of three pdc genes from rice.	Theor. Appl. Genet.	98	815-824	1999	PDC2,PDC1,PDC3	pdc2*, pdc2,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2,pdc3*, pdc3, OsPDC3, OsSTA202
20551		Sanchez, A.C., L.L. Ilag, D. Yang, D.S. Brar, F. Ausubel, G.S. Khush, M. Yano, T. Sasaki, Z. Li and N. Huang	Genetic and physical mapping of xa13, a recessive bacterial blight resistance gene in rice.	Theor. Appl. Genet.	98	1022-1028	1999	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
20552		Nishizawa, Y., Z. Nishio, K. Nakazono, M. Soma, E. Nakajima, M. Ugaki and T. Hibi	Enhanced resistance to blast (Magnaporthe grisea) in transgenic Japonica rice by constitutive expression of rice chitinase.	Theor. Appl. Genet.	99	383-390	1999	CHT2,CHT3	Cht2*, Cht2, RC7, OsChia1b, Chia1b,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11
20553		Tan, Y.F., J.X. Li, S.B. Yu, Y.Z, Xing, C.G. Xu and Q. Zhang	The three important traits for cooking and eating quality of rice grains are controlled by a single locus in an elite rice hybrid, Shanyou 63.	Theor. Appl. Genet.	99	642-648	1999	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20554		Bao, J.S., X.W. Zheng, Y.W. Xia, P. He, Q.Y. Shu, X. Lu, Y. Chen and L.H. Zhu	QTL mapping for the paste viscosity characteristics in rice (Mryza sativa L.).	Theor. Appl. Genet.	100	280-284	2000	qPKV-2,qPKV-12,qHPV-6-1,qHPV-6-2,qCPV-6-1,qCPV-6-2,qCPV-1,qBDV-7,qBDV-1,qBDV-5,qBDV-6,qBDV-12,qCSV-1,qCSV-6-2,qCSV-6-1,qCSV-7,qSBV-1,qSBV-5-1,qSBV-5-2,qSBV-6	qPKV-2,qPKV-12,qHPV-6-1,qHPV-6-2,qCPV-6-1,qCPV-6-2,qCPV-1,qBDV-7,qBDV-1,qBDV-5,qBDV-6,qBDV-12,qCSV-1,qCSV-6-2,qCSV-6-1,qCSV-7,qSBV-1,qSBV-5-1,qSBV-5-2,qSBV-6
20555		Lorieux, M., M.-N. Ndjiondjop and A. Ghesquiere	A first interspecific Oryza sativa x Oryza glaberrima microsatellite-based genetic linkage map.	Theor. Appl. Genet.	100	593-601	2000	S10	
20556		Dong, N.V., P.K. Subudhi, P.N. Luong, _v.D. Quang, T.D. Quy, J.G. Zheng, B. Wang and H.T. Nguyen	Molecular mapping of a rice gene conditioning thermosensitive genic male sterility using AFLP, RFLP and SSR techniques.	Theor. Appl. Genet.	100	727-734	2000	TMS4	tms4(t), ms84, tms4(t)*, tgms-vn1
20557		Cai, H.-W. and H. Morishima	Genomic regions affecting seed shattering and seed dormancy in rice.	Theor. Appl. Genet.	100	840-846	2000	qSH-1-2(t) (qSHT-1),qSH-4-2(t) (qSHT-4),qSH-8-1(t) (qSHT-8),qSH-11-1(t) (qSHT-11),qDOR-2,qDOR-3-1,qDOR-3-2,qDOR-3-3,qDOR-5-1,qDOR-5-2,qDOR-6-1,qDOR-6-2,qDOR-8,qDOR-9-1,qDOR-9-2,qDOR-11-1,qDOR-11-2,qDOR-11-3,qDOR-11-4,qDOR-11-5,qDOR-11-6	qSH-1-2(t) (qSHT-1),qSH-4-2(t) (qSHT-4),qSH-8-1(t) (qSHT-8),qSH-11-1(t) (qSHT-11),qDOR-2,qDOR-3-1,qDOR-3-2,qDOR-3-3,qDOR-5-1,qDOR-5-2,qDOR-6-1,qDOR-6-2,qDOR-8,qDOR-9-1,qDOR-9-2,qDOR-11-1,qDOR-11-2,qDOR-11-3,qDOR-11-4,qDOR-11-5,qDOR-11-6
20558		Hittalmani, S., A. Parco, T.V. Mew, R.S. Zeigler and N. Huang	Fine mapping and DNA marker-assisted pyramiding of the three major genes for blast resistance in rice.	Theor. Appl. Genet.	100	1121-1128	2000	PITA,PBR*,PI1,PI30,PIZ,PIZ5	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,PBR*,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-30(t), Pi30(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
20559		Tripathy, J.N., J. Zhang, S. Robin, T.T. Nguyen and H.T. Nguyen	QTLs for cell-membrane stability mapped in rice (Oryza sativa L.) under drought stress.	Theor. Appl. Genet.	100	1197-1202	2000	qCMS-3-1(t) (QCMS3.1),qCMS-7-1(t) (QCMS7.1),qCMS-8-1(t) (QCMS8.1),qCMS-8-2(t) (QCMS8.2),qCMS-9-1(t) (QCMS9.1),qCMS-9-2(t) (QCMS9.2),qCMS-11-1(t) (QCMS11.1),qCMS-12-1(t) (QCMS12.1),qCMS-1-1(t) (QCMS1.1)	qCMS-3-1(t) (QCMS3.1),qCMS-7-1(t) (QCMS7.1),qCMS-8-1(t) (QCMS8.1),qCMS-8-2(t) (QCMS8.2),qCMS-9-1(t) (QCMS9.1),qCMS-9-2(t) (QCMS9.2),qCMS-11-1(t) (QCMS11.1),qCMS-12-1(t) (QCMS12.1),qCMS-1-1(t) (QCMS1.1)
20560		Tu, J., K. Datta, G.S. Khush, Q. Zhang and S.K. Datta	Field performance of Xa21 transgenic indica rice (Oryza sativa L.), IR72.	Theor. Appl. Genet.	101	15-20	2000	XA21	Xa21*, Xa21, OsXA21
20561		Hayano-Saito, Y., K. Saito, S. Nakamura, S. Kawasaki and M. Iwasaki	Fine physical mapping of the rice stripe resistance gene locus, Stvb-i.	Theor. Appl. Genet.	101	59-63	2000	STVB	Stvb(St2), St2, Stvb, Stv2
20562		Li, J.X., S.B. Yu, C.G. Xu, Y.F. Tan, Y.J. Gao, X.H. Li and Qifa Zhang	Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid.	Theor. Appl. Genet.	101	248-254	2000	qYD-7-1 (yd7a),qYD-8 (yd8),qYD-6 (yd6),qYD-7-2 (yd7b),qTP-1 (tp1),qTP-7-1 (tp7a),qTP-7-2 (tp7b),qGP-3 (gp3),qGP-5-1 (gp5a),qGP-7-1 (gp7a),qGP-1 (gp1),qGP-5-2 (gp5b),qGP-6 (gp6),qGP-7-2 (gp7b),qGW-3-1(t) (gw3),qGW-5-1(t) (gw5a),qGW-5-2(t) (gw5b),qGW-7-1(t) (gw7),qGW-11-1(t) (gw11)	qYD-7-1 (yd7a),qYD-8 (yd8),qYD-6 (yd6),qYD-7-2 (yd7b),qTP-1 (tp1),qTP-7-1 (tp7a),qTP-7-2 (tp7b),qGP-3 (gp3),qGP-5-1 (gp5a),qGP-7-1 (gp7a),qGP-1 (gp1),qGP-5-2 (gp5b),qGP-6 (gp6),qGP-7-2 (gp7b),qGW-3-1(t) (gw3),qGW-5-1(t) (gw5a),qGW-5-2(t) (gw5b),qGW-7-1(t) (gw7),qGW-11-1(t) (gw11)
20563		Tang, D., W. Wu, W. Li, H. Lu and A.J. Worland	Mapping of QTLs conferring resistance to bacterial leaf streak in rice.	Theor. Appl. Genet.	101	286-291	2000	qBLSR-1 (qBlsr1),qBLSR-2 (qBlsr2),qBLSR-3-1 (qBlsr3a),qBLSR-3-2 (qBlsr3b),qBLSR-3-3 (qBlsr3c),qBLSR-3-4 (qBlsr3d),qBLSR-4-1 (qBlsr4a),qBLSR-4-2 (qBlsr4b),qBLSR-5-1 (qBlsr5a),qBLSR-5-2 (qBlsr5b),qBLSR-11 (qBlsr11)	qBLSR-1 (qBlsr1),qBLSR-2 (qBlsr2),qBLSR-3-1 (qBlsr3a),qBLSR-3-2 (qBlsr3b),qBLSR-3-3 (qBlsr3c),qBLSR-3-4 (qBlsr3d),qBLSR-4-1 (qBlsr4a),qBLSR-4-2 (qBlsr4b),qBLSR-5-1 (qBlsr5a),qBLSR-5-2 (qBlsr5b),qBLSR-11 (qBlsr11)
20564		Garland, S., L. Lewin, A. Blakeney, R. Reinke and R. Henry	PCR-based molecular markers for the fragrance gene in rice (Oryza sativa L.).	Theor. Appl. Genet.	101	364-371	2000	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
20565		Zou, J.H., X.B. Pan, Z.X. Chen, J.Y. Xu, J.F. Lu, W.X. Zhai and L.H. Zhu	Mapping quantitative trait loci controlling sheath blight resistance in two rice cultivars (Oryza sativa L.).	Theor. Appl. Genet.	101	569-573	2000	qSB-2,qSB-3,qSB-7,qSB-11,qSB-9-1,qSB-9-2,qHD-2(t)(qHD-2),qHD-3-1,qHD-5(t)(qHD-5),qHD-7-4(t)(qHD-7),qPH-3-1(t),qPH-4-1(t),qPH-11-1(t)	qSB-2,qSB-3,qSB-7,qSB-11,qSB-9-1,qSB-9-2,qHD-2(t)(qHD-2),qHD-3-1,qHD-3-1(t)(qHD-3),qHD-5(t)(qHD-5),qHD-7-4(t)(qHD-7),qPH-3-1(t),qPH-4-1(t),qPH-11-1(t)
20566		Lin, H.X., T. Yamamoto, T. Sasaki and M. Yano	Characterization and detection of epistatic interactions of 3 QTLs, Hd1, Hd2, and Hd3, controlling heading date in rice using nearly isogenic lines.	Theor. Appl. Genet.	101	1021-1028	2000	SE1,HD3A,HD2	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
20567		Sripongpangkul, K., G.B.T. Posa, D.W. Senadhira, D. Brar, N. Huang, G.S. Khush and Z.K. Li	Genes/QTLs affecting flood tolerance in rice.	Theor. Appl. Genet.	101	1074-1081	2000	SUB1,qINE-1(QIne1),qINE-4(QIne4)	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1,qINE-1(QIne1),qINE-4(QIne4)
20568		Barlaan, E.A., H. Sato, J. Mushika, S. Taketa and M. Ichii	Molecular mapping of the cnx2 locus involved in molybdenum cofactor biosynthesis in rice (Oryza sativa L.).	Theor. Appl. Genet.	102	540-544	2001	CNX2	cnx2*, cnx2, cnx 2
20569		Huang, Z., G. He, L. Shu, X. Li and Q. Zhang	Identification and mapping of two brown planthopper resistance genes in rice.	Theor. Appl. Genet.	102	929-934	2001	BPH14,BPH15	Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,Bph15 (Qbp2), Bph15, Qbp2, qBPH-4
20571		Liu, Y.S., L.H. Zhu, J.S. Sun and Y. Chen	Mapping QTLs for defective female gametophyte development in an inter-subspecific cross in Oryza sativa L.	Theor. Appl. Genet.	102	1243-1251	2001	qESA-6 (esa-1),qESA-12-1 (esa-2),qESA-12-2 (esa-3)	qESA-6 (esa-1),qESA-12-1 (esa-2),qESA-12-2 (esa-3)
20572		Katiyar, S.K., Y. Tan, B. Huang, G. Chandel, Y. Xu, Y. Zhang, Z. Xie and J. Bennett	Molecular mapping of gene Gm6(t) which confers resistance against four biotypes of Asian rice gall midge in China.	Theor. Appl. Genet.	103	953-961	2001	GM6	Gm6(t), Gm6
20573		Zhang, J., H.G. Zheng, A. Aarti, G. Pantuwan, T.T. Nguyen, J.N. Tripathy, A.K. Sarial, S. Robin, R.C. Babu, Bay D. Nguyen, S. Sarkarung, A. Blum and H.T. Nguyen	Locating genomic regions associated with components of drought resistance in rice: comparative mapping within and across species.	Theor. Appl. Genet.	103	19-29	2001	qOA-2-1 (oa2.1),qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),qOA-9-1 (oa9.1),qRPI-3-1(rpi3.1),qRPI-4-1(rpi4.1),qOA-1-1 (oa1.1),qRPI-4-2(rpi4.2),qRPI-12-1(rpi12.1),qBRT-2-1(brt2.1),qBRT-3-1(brt3.1),qBRT-4-1(brt4.1),qBRT-8-1(brt8.1),qBRT-9-1(brt9.1),qBRT-12-1(brt12.1),qPRT-1-2(prt1.2),qPRT-2-1(prt2.1),qPRT-2-2(prt2.2),qPRT-4-1(prt4.1),qPRT-6-1(prt6.1),qPRT-7-1(prt7.1),qPRT-9-1(prt9.1),qPRT-9-2(prt9.2),qPRT-12-1(prt12.1),qPRT-12-2(prt12.2),qPRT-1-1(prt1.1),qRPF-2-1(rpf2.1),qRPF-3-1(rpf3.1),qRPF-3-2(rpf3.2),qRPF-4-1(rpf4.1),qRPF-5-1(rpf5.1),qRPF-11-1(rpf11.1),qTRDW-1-1(trdw1.1),qTRDW-2-1(trdw2.1),qTRDW-4-1(trdw4.1),qTRDW-6-1(trdw6.1),qTRDW-10-1(trdw10.1),qPRDW-4-1(prdw4.1),qPRDW-9-1(prdw9.1),qPRDW-12-1(prdw12.1),qPRL-11-1(prl11.1)	qOA-2-1 (oa2.1),qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),qOA-9-1 (oa9.1),qRPI-3-1(rpi3.1),qRPI-4-1(rpi4.1),qOA-1-1 (oa1.1),qRPI-4-2(rpi4.2),qRPI-12-1(rpi12.1),qBRT-2-1(brt2.1),qBRT-3-1(brt3.1),qBRT-4-1(brt4.1),qBRT-8-1(brt8.1),qBRT-9-1(brt9.1),qBRT-12-1(brt12.1),qPRT-1-2(prt1.2),qPRT-2-1(prt2.1),qPRT-2-2(prt2.2),qPRT-4-1(prt4.1),qPRT-6-1(prt6.1),qPRT-7-1(prt7.1),qPRT-9-1(prt9.1),qPRT-9-2(prt9.2),qPRT-12-1(prt12.1),qPRT-12-2(prt12.2),qPRT-1-1(prt1.1),qRPF-2-1(rpf2.1),qRPF-3-1(rpf3.1),qRPF-3-2(rpf3.2),qRPF-4-1(rpf4.1),qRPF-5-1(rpf5.1),qRPF-11-1(rpf11.1),qTRDW-1-1(trdw1.1),qTRDW-2-1(trdw2.1),qTRDW-4-1(trdw4.1),qTRDW-6-1(trdw6.1),qTRDW-10-1(trdw10.1),qPRDW-4-1(prdw4.1),qPRDW-9-1(prdw9.1),qPRDW-12-1(prdw12.1),qPRL-11-1(prl11.1)
20574	12582666	Yu, S.B., J.X. Li, C.G. Xu, Y.F. Tan, X.H. Li, Qifa Zhang	Identification of quantitative trait loci and epistatic interactions for plant height and heading date in rice.	Theor. Appl. Genet.	104	619-625	2002	qPH-1-1(t) (ph1),qPH-3-2(t) (ph3),qPH-5-1(t) (ph5a),qPH-5-2(t) (ph5b),qPH-7-1(t) (ph7),qHD-3-2,qHD-6,qHD-7-1(t)(hd7a),qHD-7-2(t)(hd7b),qHD-7-3(t)(hd7c),qHD-11-1(t)(hd11)	qPH-1-1(t) (ph1),qPH-3-2(t) (ph3),qPH-5-1(t) (ph5a),qPH-5-2(t) (ph5b),qPH-7-1(t) (ph7),qHD-3-2,qHD-3-2(t)(hd3),qHD-6,qHD-6(t)(hd6),qHD-7-1(t)(hd7a),qHD-7-2(t)(hd7b),qHD-7-3(t)(hd7c),qHD-11-1(t)(hd11)
20575		Fukuoka, S. and K. Okuno	QTL analysis and mapping of pi21, a recessive gene for field resistance to rice blast in Japanese upland rice.	Theor. Appl. Genet.	103	185-190	2001	PI21	pi21, rMg40
20576		Murai, H., Z. Hashimoto, P.N. Sharma, T. Shimizu, K. Murata, S. Takumi, N. Mori, S. Kawasaki, C. Nakamura	Construction of a high-resolution linkage map of a rice brown planthopper (Nilaparvata lugens Stal) resistance gene bph2.	Theor. Appl. Genet.	103	526-532	2001	BPH2	bph2
20577		Jia, J.H., D.S. Zhang, C.Y. Li, X.P. Qu, S.W. Wang, V. Chamarerk, H.T. Nguyen, B. Wang.	Molecular mapping of the reverse thermo-sensitive genic male-sterile gene (rtms1) in rice.	Theor. Appl. Genet.	103	607-612.	2001	RTMS1	rtms1, rtms1*
20578		Saito, K., K. Miura, K. Nagano, Y. Hayano-Saito, H. Araki, A. Kato	Identification of two closely linked quantitative trait loci for cold tolerance on chromosome 4 of rice and their association with anther length.	Theor. Appl. Genet.	103	862-868	2001	qCTB-4-1(t) (Ctb-1, Ctb1),qCTB-4-2(t) (Ctb-2)	qCTB-4-1(t) (Ctb-1, Ctb1),qCTB-4-2(t) (Ctb-2)
20579	12579422	Umemoto, T., M. Yano, H. Satoh, A. Shomura, Y. Nakamura	Mapping of a gene responsible for the difference in amylopectin structure between japonica-type and indica-type rice varieties.	Theor. Appl. Genet.	104	1-8	2002	ALK,GEL,ACL	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,gel(t), gel,acl (t), acl(t), acl
20580	12582694	Xu, X.F., H.W. Mei, L.J. Luo, X.N. Cheng, Z.K. Li	RFLP-facilitated investigation of the quantitative resistance of rice to brown planthopper (Nilaparvata lugens).	Theor. Appl. Genet.	104	248-253	2002	qBPHR-1 (QBphr1),qBPHR-3 (QBphr3),qBPHR-5-1 (QBphr5a),qBPHR-5-2 (QBphr5b),qBPHR-8 (QBphr8),qBPHR-11-1 (QBphr11a),qBPHR-11-2 (QBphr11b)	qBPHR-1 (QBphr1),qBPHR-3 (QBphr3),qBPHR-5-1 (QBphr5a),qBPHR-5-2 (QBphr5b),qBPHR-8 (QBphr8),qBPHR-11-1 (QBphr11a),qBPHR-11-2 (QBphr11b)
20581	12582654	Cha, K.-W., Y.-J. Lee, H.-J. Koh, B.-M. Lee, Y.-W. Nam, N.-C. Paek	Isolation, characterization, and mapping of the stay green mutant in rice.	Theor. Appl. Genet.	104	526-532	2002	SGR	sgr(t), sgr, OsSGR, OsSgr
20582	12582636	Monna, L., H. Lin, S. Kojima, T. Sasaki, M. Yano	Genetic dissection of a genomic region for a quantitative trait locus, Hd3, into two loci, Hd3a and Hd3b, controlling heading date in rice.	Theor. Appl. Genet.	104	772-778	2002	HD3B,HD3A	Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20583	12582603	Miura, K., S. Lin, M. Yano and T. Nagamine	Mapping quantitative trait loci controlling seed longevity in rice (Oryza sativa L.)	Theor. Appl. Genet.	104	981-986	2002	qSD-1,qSD-3,qSD-5,qSD-7-1,qSD-11,qLG-2,qLG-4,qLG-9	qSD-1,qSD-3,qSD-5,qSD-7-1,qSD-11,qLG-2,qLG-4,qLG-9
20584	12582557	Zhang, J., Y. Xu, X. Wu, L. Zhu	A bentazon and sulfonylurea sensitive mutant: breeding, genetics and potential application in seed production of hybrid rice.	Theor. Appl. Genet.	105	16-22	2002	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6
20586	12582477	Ahn, B., K. Miyoshi, J.-I. Itoh, Y. Nagato, N. Kurata	A genetic and physical map of the region containing PLASTOCHRON1, a heterochronic gene, in rice (Oryza sativa L.).	Theor. Appl. Genet.	105	654-659	2002	PLA1	pla1, OsPLA1, plt1, CYP78A11
20587	12582482	Sardesai, N., A. Kumar, K. Rajyashri, S. Nair, M. Mohan	Identification and mapping of an AFLP marker linked to Gm7, a gall midge resistance gene and its conversion to a SCAR marker for its utility in marker aided selection in rice.	Theor. Appl. Genet.	105	691-698	2002	GM7,GM2	Gm7*, Gm7,Gm2, Gm-2, GM-2
20588	12582488	Cui, K., S. Peng, Y. Xing, C. Xu, S. Yu, Q. Zhang	Molecular dissection of seedling-vigor and associated physiological traits in rice.	Theor. Appl. Genet.	105	745-753	2002	qGR-3-1 (qGR3-1),qGR-3-2 (qGR3-2),qGR-3-3 (qGR3-3),qGR-5-1 (qGR5-1),qGR-5-2 (qGR5-2),qGR-6-1 (qGR6-1),qGR-6-2 (qGR6-2),qGR-7-1 (qGR7-1),qTDW-1-1 (qTDW1-1),qTDW-1-2 (qTDW1-2),qTDW-3-1 (qTDW3-1),qTDW-5-1 (qTDW5-1),qTDW-5-2 (qTDW5-2),qTDW-6-1 (qTDW6-1),qTDW-6-2 (qTDW6-2),qTDW-9-1 (qTDW9-1),qSDW-1-1 (qSDW1-1),qSDW-3-1 (qSDW3-1),qSDW-5-1 (qSDW5-1),qSDW-5-2 (qSDW5-2),qSDW-6-1 (qSDW6-1),qSDW-6-2(qSDW6-2),qSDW-9-1 (qSDW9-1),qRDW-1-1 (qRDW1-1),qRDW-5-1 (qRDW5-1),qRDW-5-2 (qRDW5-2),qRDW-10-1 (qRDW10-1),qMRL-1-1 (qMRL1-1),qMRL-1-2 (qMRL1-2),qMRL-5-1 (qMRL5-1),qMRL-6-1 (qMRL6-1),qTAA-3-1 (qTAA3-1),qTAA-5-1 (qTAA5-1),qTAA-6-1 (qTAA6-1),qAAA-6-1(qAAA6-1),qAAA-6-2 (qAAA6-2),qRS-3-1 (qRS3-1),qRS-5-1 (qRS5-1),qRS-6-1 (qRS6-1),qRS-6-2 (qRS6-2),qRS-10-1 (qRS10-1),qRS-11-1 (qRS11-1),qRA-5-1 (qRA5-1),qRA-5-2 (qRA5-2),qRA-9-1 (qRA9-1),qSW-1-1 (qSW1-1),qSW-1-2 (qSW1-2),qSW-1-3 (qSW1-3),qSW-3-2 (qSW3-2),qSW-3-1 (qSW3-1),qSW-5-1 (qSW5-1),qSW-8-1 (qSW8-1),qSW-9-1 (qSW9-1),qSW-11-1 (qSW11-1),qAAA-6-1 (qAAA6-1),qRA-9-1 (qRA5-1)	qGR-3-1 (qGR3-1),qGR-3-2 (qGR3-2),qGR-3-3 (qGR3-3),qGR-5-1 (qGR5-1),qGR-5-2 (qGR5-2),qGR-6-1 (qGR6-1),qGR-6-2 (qGR6-2),qGR-7-1 (qGR7-1),qTDW-1-1 (qTDW1-1),qTDW-1-2 (qTDW1-2),qTDW-3-1 (qTDW3-1),qTDW-5-1 (qTDW5-1),qTDW-5-2 (qTDW5-2),qTDW-6-1 (qTDW6-1),qTDW-6-2 (qTDW6-2),qTDW-9-1 (qTDW9-1),qSDW-1-1 (qSDW1-1),qSDW-3-1 (qSDW3-1),qSDW-5-1 (qSDW5-1),qSDW-5-2 (qSDW5-2),qSDW-6-1 (qSDW6-1),qSDW-6-2(qSDW6-2),qSDW-9-1 (qSDW9-1),qRDW-1-1 (qRDW1-1),qRDW-5-1 (qRDW5-1),qRDW-5-2 (qRDW5-2),qRDW-10-1 (qRDW10-1),qMRL-1-1 (qMRL1-1),qMRL-1-2 (qMRL1-2),qMRL-5-1 (qMRL5-1),qMRL-6-1 (qMRL6-1),qTAA-3-1 (qTAA3-1),qTAA-5-1 (qTAA5-1),qTAA-6-1 (qTAA6-1),qAAA-6-1 (qAAA6-1),qAAA-6-2 (qAAA6-2),qRS-3-1 (qRS3-1),qRS-5-1 (qRS5-1),qRS-6-1 (qRS6-1),qRS-6-2 (qRS6-2),qRS-10-1 (qRS10-1),qRS-11-1 (qRS11-1),qRA-5-1 (qRA5-1),qRA-5-2 (qRA5-2),qRA-9-1 (qRA9-1),qSW-1-1 (qSW1-1),qSW-1-2 (qSW1-2),qSW-1-3 (qSW1-3),qSW-3-2 (qSW3-2),qSW-3-1 (qSW3-1),qSW-5-1 (qSW5-1),qSW-8-1 (qSW8-1),qSW-9-1 (qSW9-1),qSW-11-1 (qSW11-1),qAAA-6-1 (qAAA6-1),qRA-9-1 (qRA5-1)
20589	12582916	Kubo, T. and A. Yoshimura	Genetic basis of hybrid breakdown in a Japonica/Indica cross of rice, Oryza sativa L.	Theor. Appl. Genet.	105	906-911	2002	HWE1,HWE2	hwe1(t)*, hwe1,hwe2
20590	12582891	Zhuang, J.Y., Y.Y. Fan, Z.M. Rao, J.L. Wu, Y.W. Xia, K.L. Zheng	Analysis on additive effects and additive-by-additive epistatic effects of QTLs for yield traits in a recombinant inbred line population of rice.	Theor. Appl. Genet.	105	1137-1145	2002	qTNSP-1-2 (TNSP-1-2),qTNSP-2-1 (TNSP-2-1),qTGWT-1-2 (TGWT-1-2),qTGWT-2-1(t) (TGWT-2-1),qTGWT-1-3 (TGWT-1-3),qGYD-1-1,qGYD-1-2,qGYD-6-1,qGYD-7-1,qGYD-7-2,qGYD-10,qNP-6-1 (NP-6),qNFGP-1-2,qNFGP-3-1,qNFGP-5-1,qNFGP-5-2,qNFGP-6,qNFGP-7-1,qNFGP-7-2,qTNSP-2-2,qTNSP-5,qNFGP-1-1,qTNSP-1-1,qTNSP-6,qTNSP-7,qTNSP-9,qSF-1(t),qSF-10-1(t),qTGWT-1-1,qTGWT-2-2(t),qTGWT-3-1(t),qTGWT-3-2(t),qTGWT-4-1(t) (qTGWT-4),qTGWT-5-1(t) (qTGWT-5),qTGWT-6-1(t) (qTGWT-6),qTGWT-10-1(t) (qTGWT-10),qGYD-2 (GYD-2),qGYD-6-2 (GDY-6-2),qGYD-7-3 (GYD-7-3),qNP-1-1 (NP-1),qNP-2-1 (NP-2-1),qNP-2-2 (NP-2-2),qNP-3-1 (NP-3-1),qNP-3-2 (NP-3-2),qNP-5-1 (NP-5),qNFGP-3-2 (NFGP-3-2),qNFGP-4 (NFGP-4)	qTNSP-1-2 (TNSP-1-2),qTNSP-2-1 (TNSP-2-1),qTGWT-1-2 (TGWT-1-2),qTGWT-2-1(t) (TGWT-2-1),qTGWT-1-3 (TGWT-1-3),qGYD-1-1,qGYD-1-2,qGYD-6-1,qGYD-7-1,qGYD-7-2,qGYD-10,qNP-6-1 (NP-6),qNFGP-1-2,qNFGP-3-1,qNFGP-5-1,qNFGP-5-2,qNFGP-6,qNFGP-7-1,qNFGP-7-2,qTNSP-2-2,qTNSP-5,qNFGP-1-1,qTNSP-1-1,qTNSP-6,qTNSP-7,qTNSP-9,qSF-1(t),qSF-10-1(t),qTGWT-1-1,qTGWT-2-2(t),qTGWT-3-1(t),qTGWT-3-2(t),qTGWT-4-1(t) (qTGWT-4),qTGWT-5-1(t) (qTGWT-5),qTGWT-6-1(t) (qTGWT-6),qTGWT-10-1(t) (qTGWT-10),qGYD-2 (GYD-2),qGYD-6-2 (GDY-6-2),qGYD-7-3 (GYD-7-3),qNP-1-1 (NP-1),qNP-2-1 (NP-2-1),qNP-2-2 (NP-2-2),qNP-3-1 (NP-3-1),qNP-3-2 (NP-3-2),qNP-5-1 (NP-5),qNFGP-3-2 (NFGP-3-2),qNFGP-4 (NFGP-4)
20591	12582854	Che, K., Q. Zhan, Q. Xing, Z. Wang, D. Jin, D. He, B. Wang	Tagging and mapping of rice sheath blight resistant gene.	Theor. Appl. Genet.	106	293-297	2003	RSB1	Rsb1, Rsb1*, RRS3
20592	12595985	Bay D. Nguyen, Darshan S. Brar, Buu C. Bui, Tao V. Nguyen Luong N. Pham, Henry T. Nguyen	Identification and mapping of the QTL for aluminum tolerance introgressed from the new source, ORYZA RUFIPOGON Griff., into indica rice (Oryza sativa L.).	Theor. Appl. Genet.	106	583-593	2003	qALCR-12-1 (QAlCr12.1),qALSR-2-1 (QAlSr2.1),qALSR-3-1 (QAlSr3.1),qALSR-8-1 (QAlSr8.1),qALRR-1-1 (QAlRr1.1),qALRR-3-1 (QAlRr3.1),qALRR-7-1 (QAlRr7.1),qALRR-8-1 (QAlRr8.1),qALRR-9-1 (QAlRr9.1)	qALCR-12-1 (QAlCr12.1),qALSR-2-1 (QAlSr2.1),qALSR-3-1 (QAlSr3.1),qALSR-8-1 (QAlSr8.1),qALRR-1-1 (QAlRr1.1),qALRR-3-1 (QAlRr3.1),qALRR-7-1 (QAlRr7.1),qALRR-8-1 (QAlRr8.1),qALRR-9-1 (QAlRr9.1)
20593	12647052	Sallaud, C., M. Lorieux, E. Roumen, D Tharreau, R. Berruyer, P. Svestasrani, O. Garsmeur, A. Ghesquiere, J.L. Nottenghem	Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy.	Theor. Appl. Genet.	106	794-803	2003	PITA,PI33,PIZ,PI1,PI32,PI31,PI29,PIM,PI18,PI,PI17,PI23,PI6,PI8,PI30,PI10,PI22,PIKUR1,PILM2,PIF,PITQ6,PIK,PII,PIT,PISH,PIB,PI11,PI25,PI24,PI27,PI21,PI28,PI26,PI12,PI7,PITQ5,PII2,PIA,PI9,PIQ1,PI157	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-32(t), Pi32(t)*, Pi32(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi-29(t), Pi29(t),Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi(t)*, Pi(t),Pi17(t), Pi17, Pi-17(t),Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi8, Pi-8,Pi-30(t), Pi30(t),Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi-lm2, Pilm2, Pi lm2, Pib2,Pi f, PIF, Pif, RMg3, Pi-f,Pi-tq6, Pitq6,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi i, Pii, Pi-i, Pii(t),Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi sh, Pish, Pi-sh, Pish(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi25(t), Pi-25(t),Pi24(t), Pi-24(t), Pi-24, Pi24,Pi27(t), Pi-27(t),Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi28(t), Pi-28(t),Pi26(t), Pi-26(t),Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi7, Pi-7(t), Pi7(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi i2, Pii2, Pii2(t),Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi157*, Pi157(t)*, Pi-157, Pi157
20594	12671757	Andaya, V. and D. Mackill	QTLs conferring cold tolerance at the booting stage of rice using recombinant inbred lines from a japonica x indica cross.	Theor. Appl. Genet.	106	1084-1090	2003	qCTB-2-1(t) (qCTB2a),qCTB-9(t) (qCTB9),qCTB-1(t)  (qCTB1),qCTB-2-2(t) (qCTB2b),qCTB-3(t) (qCTB3),qCTB-7(t) (qCTB7),qCTB-6 (t) (qCTL6),qCTB-12(t) (qCTB12),qCTB-5(t) (qCTB5)	qCTB-2-1(t) (qCTB2a),qCTB-9(t) (qCTB9),qCTB-1(t)  (qCTB1),qCTB-2-2(t) (qCTB2b),qCTB-3(t) (qCTB3),qCTB-7(t) (qCTB7),qCTB-6 (t) (qCTL6),qCTB-12(t) (qCTB12),qCTB-5(t) (qCTB5)
20595	12595998	Sun, X., Z. Yang, S. Wang, Q. Zhang	Identification of a 47-kb DNA fragment containing Xa4, a locus for bacterial blight resistance in rice.	Theor. Appl. Genet.	106	683-687.	2003	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
20596	12750790	Yang, Z., X. Sun, S. Wang, Q. Zhang	Genetic and physical mapping of a new gene for bacterial blight resistance in rice.	Theor. Appl. Genet.	106	1467-1472	2003	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
20598	12835929	Qu, L.Q., X.L. Wei, H. Satoh, T. Kumamaru, M. Ogawa, F. Takaiwa	Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene.	Theor. Appl. Genet.	107	20-25	2003	GLU4	glu4a
20600	12721635	Mei, H.W., L.J. Luo, C.S. Ying, Y.P. Wang, X.Q. Yu, L.B. Guo, A.H. Paterson, Z.K. Li	Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two testcross populations.	Theor. Appl. Genet.	107	89-101	2003	qHD-3-3(t) (QHd3),qHD-4(t)(QHd4),qHD-7-5(t)(QHd7),qHD-8-1(t) (QHd8),qHD-11-2(t)(QHd11),qHD-12-1(t)(QHd12),qPH-3-3(t) (QPh3a),qPH-3-4(t) (QPh3b, QPh3a),qPH-4-2(t) (QPh4),qPH-6-1(t) (QPh6),qPH-8-1(t) (QPh8),qFLL-2-1(t) (QFll2),qFLL-3-1(t) (QFll3),qFLW-1-1(t) (QFlw1),qFLW-4-1(t) (QFlw4),qFLW-6-1(t) (QFlw6),qFLW-8-1(t) (QFlw8),qFLW-12-1(t) (QFlw12),qPL-8-1(t) (QPl8),qPL-2-1(t) (QPl2),qPL-10-1(t) (QPl10),qSN-1-1(t) (QSn1),qSN-3-1(t) (QSn3),qSN-6-1(t) (QSn6),qSN-11-1(t) (QSn11),qSF-3-1(t) (QSf3),qSF-5-1(t) (QSf5),qSF-6-1(t) (QSf6),qSF-7-1(t) (QSf7),qSF-8-1(t) (QSf8),qSF-10-2(t) (QSf10),qSF-11-1(t) (QSf11)	qHD-3-3(t) (QHd3),qHD-4(t)(QHd4),qHD-7-5(t)(QHd7),qHD-8-1(t) (QHd8),qHD-11-2(t)(QHd11),qHD-12-1(t)(QHd12),qPH-3-3(t) (QPh3a),qPH-3-4(t) (QPh3b, QPh3a),qPH-4-2(t) (QPh4),qPH-6-1(t) (QPh6),qPH-8-1(t) (QPh8),qFLL-2-1(t) (QFll2),qFLL-3-1(t) (QFll3),qFLW-1-1(t) (QFlw1),qFLW-4-1(t) (QFlw4),qFLW-6-1(t) (QFlw6),qFLW-8-1(t) (QFlw8),qFLW-12-1(t) (QFlw12),qPL-8-1(t) (QPl8),qPL-2-1(t) (QPl2),qPL-10-1(t) (QPl10),qSN-1-1(t) (QSn1),qSN-3-1(t) (QSn3),qSN-6-1(t) (QSn6),qSN-11-1(t) (QSn11),qSF-3-1(t) (QSf3),qSF-5-1(t) (QSf5),qSF-6-1(t) (QSf6),qSF-7-1(t) (QSf7),qSF-8-1(t) (QSf8),qSF-10-2(t) (QSf10),qSF-11-1(t) (QSf11)
20602	12736777	Thomson, M.J., T.H. Tai, A.M. McClung, X.H. Lai, M.E. Hinga, K.B. Lobos, Y. Xu, C.P. Martinez, S.R. McCouch	Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson.	Theor. Appl. Genet.	107	479-493	2003	qGPP-1-2(t) (gpp12.1),qGPP-1-2(t) (gpp1.1),qGPP-1-2(t) (gpp11.1),qGPP-1-2(t) (gpp9.1),qSH-3-2(t) (sh3.1),qSH-4-3(t) (sh4.1),qSH-3-3(t) (sh3.2),qSH-7-1(t) (sh7.1),qSH-8-2(t) (sh8.1),qGRM-1-1(t) (grm1.1),qGRM-4-1(t) (grm4.1),qGRM-6-1(t) (grm6.1),qAWN-4-1(t) (awn4.1),qAWN-8-1(t) (awn8.1),qTT-2-1(t) (tt2.1),qTT-5-1(t) (tt5.1),qTT-9-1(t) (tt9.1),qPH-4-3(t) (ph4.1),qPH-5-3(t) (ph5.1),qPH-8-2(t) (ph8.1),qPH-12-1(t) (ph12.1),qDTH-1-2(t)(dth1.1),qDTH-2-3(t)(dth2.1),qDTH-1-3(t)(dth1.2),qDTH-3-2(t)(dth3.1),qDTH-3-3(t)(dth3.2),qDTH-3-4(t)(dth3.3),qDTH-3-5(t)(dth3.4),qDTH-4-3(t)(dth4.1),qDTH-4-4(t)(dth4.2),qDTH-7-1,qDTH-10-1(t)(dth10.1),qGPP-1-2(t) (gpp1.2),qGPP-2-1(t) (gpp2.1),qGPP-3-1(t) (gpp3.1),qGPP-4-1(t) (gpp4.1),qGPP-8-1(t) (gpp8.1),qGPP-9-1(t) (gpp9.1),qGPP-11-1(t) (gpp11.1),qGPP-12-1(t) (gpp12.1),qGPP-12-2(t) (gpp12.2),qSPP-1-1(t)(spp1.1),qSPP-1-2(t)(spp1.2),qSPP-2-1(t)(spp2.1),qSPP-3-1(t)(spp3.1),qSPP-9-1(t)(spp9.1),qSPP-12-1(t)(spp12.1),qPL-1-1(t) (pl1.1),qPL-2-2(t) (pl2.1),qPL-4-1(t) (pl4.1),qPL-9-1(t) (pl9.1),qPL-10-2(t) (pl10.1),qPL-12-1(t) (pl12.1),qPSS-1-1(t) (pss1.1),qPSS-3-1(t) (pss3.1),qPSS-4-1(t) (pss4.1),qPSS-5-1(t) (pss5.1),qPSS-5-2(t) (pss5.2),qPSS-6-1(t) (pss6.1),qPSS-10-1(t) (pss10.1),qGW-1-1(t) (gw1.1),qGW-2-1(t) (gw2.1),qGW-3-3(t) (gw3.2),qGW-3-2(t) (gw3.1),qGW-5-3(t) (gw5.1),qGW-9-1(t) (gw9.1),qGW-10-1(t) (gw10.1),qGW-12-1(t) (gw12.1),qPPL-3-1(t) (ppl3.1),qPPL-7-1(t) (ppl7.1),qYLD-2-1(t) (yld2.1),qYLD-3-1(t) (yld3.1),qYLD-3-2(t) (yld3.2),qYLD-6-1(t) (yld6.1),qPH-1-2(t) (ph1.1),qPH-1-3(t) (ph1.2),qSH-1-3(t) (sh1.1),qYLD-9-1(t) (yld9.1),qGPP-1-2(t) (gpp4.1),qGPP-1-2(t) (gpp8.1),qGPP-1-2(t) (gpp3.1),qGPP-1-2(t) (gpp2.1),qGPP-1-2(t) (gpp12.2)	qGPP-1-2(t) (gpp12.1),qGPP-1-2(t) (gpp1.1),qGPP-1-2(t) (gpp11.1),qGPP-1-2(t) (gpp9.1),qSH-3-2(t) (sh3.1),qSH-4-3(t) (sh4.1),qSH-3-3(t) (sh3.2),qSH-7-1(t) (sh7.1),qSH-8-2(t) (sh8.1),qGRM-1-1(t) (grm1.1),qGRM-4-1(t) (grm4.1),qGRM-6-1(t) (grm6.1),qAWN-4-1(t) (awn4.1),qAWN-8-1(t) (awn8.1),qTT-2-1(t) (tt2.1),qTT-5-1(t) (tt5.1),qTT-9-1(t) (tt9.1),qPH-4-3(t) (ph4.1),qPH-5-3(t) (ph5.1),qPH-8-2(t) (ph8.1),qPH-12-1(t) (ph12.1),qDTH-1-2(t)(dth1.1),qDTH-2-3(t)(dth2.1),qDTH-1-3(t)(dth1.2),qDTH-3-2(t)(dth3.1),qDTH-3-3(t)(dth3.2),qDTH-3-4(t)(dth3.3),qDTH-3-5(t)(dth3.4),qDTH-4-3(t)(dth4.1),qDTH-4-4(t)(dth4.2),qDTH-7-1,qDTH-7-1(t)(dth7.1),qDTH-10-1(t)(dth10.1),qGPP-1-2(t) (gpp1.2),qGPP-2-1(t) (gpp2.1),qGPP-3-1(t) (gpp3.1),qGPP-4-1(t) (gpp4.1),qGPP-8-1(t) (gpp8.1),qGPP-9-1(t) (gpp9.1),qGPP-11-1(t) (gpp11.1),qGPP-12-1(t) (gpp12.1),qGPP-12-2(t) (gpp12.2),qSPP-1-1(t)(spp1.1),qSPP-1-2(t)(spp1.2),qSPP-2-1(t)(spp2.1),qSPP-3-1(t)(spp3.1),qSPP-9-1(t)(spp9.1),qSPP-12-1(t)(spp12.1),qPL-1-1(t) (pl1.1),qPL-2-2(t) (pl2.1),qPL-4-1(t) (pl4.1),qPL-9-1(t) (pl9.1),qPL-10-2(t) (pl10.1),qPL-12-1(t) (pl12.1),qPSS-1-1(t) (pss1.1),qPSS-3-1(t) (pss3.1),qPSS-4-1(t) (pss4.1),qPSS-5-1(t) (pss5.1),qPSS-5-2(t) (pss5.2),qPSS-6-1(t) (pss6.1),qPSS-10-1(t) (pss10.1),qGW-1-1(t) (gw1.1),qGW-2-1(t) (gw2.1),qGW-3-3(t) (gw3.2),qGW-3-2(t) (gw3.1),qGW-5-3(t) (gw5.1),qGW-9-1(t) (gw9.1),qGW-10-1(t) (gw10.1),qGW-12-1(t) (gw12.1),qPPL-3-1(t) (ppl3.1),qPPL-7-1(t) (ppl7.1),qYLD-2-1(t) (yld2.1),qYLD-3-1(t) (yld3.1),qYLD-3-2(t) (yld3.2),qYLD-6-1(t) (yld6.1),qPH-1-2(t) (ph1.1),qPH-1-3(t) (ph1.2),qSH-1-3(t) (sh1.1),qYLD-9-1(t) (yld9.1),qGPP-1-2(t) (gpp4.1),qGPP-1-2(t) (gpp8.1),qGPP-1-2(t) (gpp3.1),qGPP-1-2(t) (gpp2.1),qGPP-1-2(t) (gpp12.2)
20603	12734656	Sato, Y. and T. Nishio	Mutation detection in rice waxy mutants by PCR-RF-SSCP.	Theor. Appl. Genet.	107	560-567	2003	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20604	12920521	Hittalmani, S., N. Huang, B. Courtois, R. Venuprasad, H.E. Shashidhar, J.Y. Zhuang, K.L.Zheng, G.F. Liu, G.C. Wang, J.S. Sidhu, S. Srivantaneeyakul, V.P. Singh, P.G. Bagali, H.C. Prasanna, G. McLaren and G.S. Khush	Identification of QTL for growth- and grain yield-related traits in rice across nine locations of Asia.	Theor. Appl. Genet.	107	679-690	2003	qHID-3-1(t) (qHID1-1),qHID-3-2(t) (qHID1-1),qHID-1-2(t) (qHID1-1),qYLD-9-2(t) (qYLD9-1),qYLD-4-1(t) (qYLD4-1),qYLD-10-1(t) (qYLD10-1),qBMS-1-1(t) (qBMS1-1),qBMS-1-2(t) (qBMS1-2),qBMS-3-1(t) (qBMS3-1),qBMS-4-1(t) (qBMS4-1),qBMS-7-1(t) (qBMS7-1),qBMS-7-2(t) (qBMS7-2),qFRP-4-1(t) (qFRP4-1),qHDD-1-1(t)(qHDD1-1),qHDD-3-1(t)(qHDD3-1),qHDD-3-2(t)(qHDD3-2),qHDD-4-1(t)(qHDD4-1),qHDD-7-1(t)(qHDD7-1),qHDD-8-1(t)(qHDD8-1),qHDD-9-1(t)(qHDD9-1),qHID-1-1(t) (qHID1-1),qHID-1-2(t) (qHID1-2),qHID-3-1(t) (qHID3-1),qHID-3-2(t) (qHID3-2),qHID-4-1(t) (qHID4-1),qHID-4-2(t) (qHID4-2),qHID-4-3(t) (qHID4-3),qHID-7-1(t) (qHID7-1),qHID-7-2(t) (qHID7-2),qHID-8-1(t) (qHID8-1),qHID-8-2(t) (qHID8-2),qNOP-1-1(t) (qNOP1-1),qNOP-3-1(t) (qNOP3-1),qNOP-4-1(t) (qNOP4-1),qNOP-4-2(t) (qNOP4-2),qNOP-12-1(t) (qNOP12-1),qNOP-12-2(t) (qNOP12-2),qNOS-1-1(t)(qNOS1-1),qNOS-4-1(t)(qNOS4-1),qNOS-4-2(t)(qNOS4-2),qNOS-4-3(t)(qNOS4-3),qNOS-4-4(t)(qNOS4-4),qNOS-7-1(t)(qNOS7-1),qPEN-1-1(t)(qPEN1-1),qPEN-4-1(t)(qPEN4-1),qPEN-8-1(t)(qPEN8-1),qPH-1-4(t) (qPHT1-1),qPH-3-5(t) (qPHT3-1),qPH-3-6(t) (qPHT3-2),qPH-7-2(t) (qPHT7-1),qPL-1-2(t) (qPLT1-1),qPL-3-1(t) (qPLT3-1),qPL-3-2(t) (qPLT3-2),qPL-3-3(t) (qPLT3-3),qPL-4-2(t) (qPLT4-1),qPL-6-1(t) (qPLT6-1),qPL-10-3(t) (qPLT10-1),qPL-7-1(t) (qPLT7-1),qTGWT-1-4(t) (qTGW1-1),qTGWT-1-5(t) (qTGW1-2),qTGWT-1-6(t) (qTGW1-3),qTGWT-3-3(t) (qTGW3-1),qTGWT-3-4(t) (qTGW3-2),qTGWT-3-5(t) (qTGW3-3),qTGWT-6-2(t) (qTGW6-1),qTGWT-10-2(t) (qTGW10-1),qTGWT-10-3(t) (qTGW10-2),qTGWT-10-4(t) (qTGW10-3),qHID-4-3(t) (qHID1-1),qHID-8-2(t) (qHID1-1),qHID-8-1(t) (qHID1-1),qHID-7-1(t) (qHID1-1),qNOP-12-1(t) (qNOP1-1),qNOP-12-2(t) (qNOP1-1),qNOP-3-1(t) (qNOP1-1),qNOP-4-1(t) (qNOP1-1),qNOP-4-2(t) (qNOP1-1),qPPL-11-1(t) (ppl12.1),qPH-7-1(t) (qPHT1-1)	qHID-3-1(t) (qHID1-1),qHID-3-2(t) (qHID1-1),qHID-1-2(t) (qHID1-1),qYLD-9-2(t) (qYLD9-1),qYLD-4-1(t) (qYLD4-1),qYLD-10-1(t) (qYLD10-1),qBMS-1-1(t) (qBMS1-1),qBMS-1-2(t) (qBMS1-2),qBMS-3-1(t) (qBMS3-1),qBMS-4-1(t) (qBMS4-1),qBMS-7-1(t) (qBMS7-1),qBMS-7-2(t) (qBMS7-2),qFRP-4-1(t) (qFRP4-1),qHDD-1-1(t)(qHDD1-1),qHDD-3-1(t)(qHDD3-1),qHDD-3-2(t)(qHDD3-2),qHDD-4-1(t)(qHDD4-1),qHDD-7-1(t)(qHDD7-1),qHDD-8-1(t)(qHDD8-1),qHDD-9-1(t)(qHDD9-1),qHID-1-1(t) (qHID1-1),qHID-1-2(t) (qHID1-2),qHID-3-1(t) (qHID3-1),qHID-3-2(t) (qHID3-2),qHID-4-1(t) (qHID4-1),qHID-4-2(t) (qHID4-2),qHID-4-3(t) (qHID4-3),qHID-7-1(t) (qHID7-1),qHID-7-2(t) (qHID7-2),qHID-8-1(t) (qHID8-1),qHID-8-2(t) (qHID8-2),qNOP-1-1(t) (qNOP1-1),qNOP-3-1(t) (qNOP3-1),qNOP-4-1(t) (qNOP4-1),qNOP-4-2(t) (qNOP4-2),qNOP-12-1(t) (qNOP12-1),qNOP-12-2(t) (qNOP12-2),qNOS-1-1(t)(qNOS1-1),qNOS-4-1(t)(qNOS4-1),qNOS-4-2(t)(qNOS4-2),qNOS-4-3(t)(qNOS4-3),qNOS-4-4(t)(qNOS4-4),qNOS-7-1(t)(qNOS7-1),qPEN-1-1(t)(qPEN1-1),qPEN-4-1(t)(qPEN4-1),qPEN-8-1(t)(qPEN8-1),qPH-1-4(t) (qPHT1-1),qPH-3-5(t) (qPHT3-1),qPH-3-6(t) (qPHT3-2),qPH-7-2(t) (qPHT7-1),qPL-1-2(t) (qPLT1-1),qPL-3-1(t) (qPLT3-1),qPL-3-2(t) (qPLT3-2),qPL-3-3(t) (qPLT3-3),qPL-4-2(t) (qPLT4-1),qPL-6-1(t) (qPLT6-1),qPL-10-3(t) (qPLT10-1),qPL-7-1(t) (qPLT7-1),qTGWT-1-4(t) (qTGW1-1),qTGWT-1-5(t) (qTGW1-2),qTGWT-1-6(t) (qTGW1-3),qTGWT-3-3(t) (qTGW3-1),qTGWT-3-4(t) (qTGW3-2),qTGWT-3-5(t) (qTGW3-3),qTGWT-6-2(t) (qTGW6-1),qTGWT-10-2(t) (qTGW10-1),qTGWT-10-3(t) (qTGW10-2),qTGWT-10-4(t) (qTGW10-3),qHID-4-3(t) (qHID1-1),qHID-8-2(t) (qHID1-1),qHID-8-1(t) (qHID1-1),qHID-7-1(t) (qHID1-1),qNOP-12-1(t) (qNOP1-1),qNOP-12-2(t) (qNOP1-1),qNOP-3-1(t) (qNOP1-1),qNOP-4-1(t) (qNOP1-1),qNOP-4-2(t) (qNOP1-1),qPPL-11-1(t) (ppl12.1),qPH-7-1(t) (qPHT1-1)
20605	12721640	Lorieux, M., G. Reversat, S.X. Garcia Diaz, C. Denance, N. Jouvenet, Y. Orieux, N. Bourger, A. Pando-Bahuon, A. Ghesquiere	Linkage mapping of Hsa-1_og, a resistance gene of African rice to the cyst nematode, Heterodera sacchari.	Theor. Appl. Genet.	107	691-696	2003	HSA-1_OG	Hsa-1_og, Hsa-1Og, Hsa-1(Og)
20606	12827251	Wang, Y.G., Q.H. Xing, Q.Y. Deng, F.S. Liang, L.P. Yuan, M.L. Wang, and B. Wang	Fine mapping of the rice thermo-sensitive genic male-sterile gene tms5.	Theor. Appl. Genet.	107	917-921	2003	TMS5	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
20607	12955204	Conaway-Bormans, C.A., M.A. Marchetti, C.W. Johnson, A.M. McClung and W.D. Park	Molecular markers linked to the blast resistance gene Pi-z in rice for use in marker-assisted selection.	Theor. Appl. Genet.	107	1014-1020	2003	PIZ,PIZ5	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
20608	12838393	Berruyer, R., H. Adreit, J. Milazzo, S. Gaillard, A. Berger, W. Dioh, M.H. Lebrun and D. Tharreau	Identification and fine mapping of Pi33, the rice resistance gene corresponding to the Magnaporthe grisea avirulence gene ACE1.	Theor. Appl. Genet.	107	1139-1147	2003	PI11,PI29,PI33	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi-29(t), Pi29(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
20609	12898024	Takeuchi, Y., S.Y. Lin, T. Sasaki and M. Yano	Fine linkage mapping enables dissection of closely linked quantitative trait loci for seed dormancy and heading in rice.	Theor. Appl. Genet.	107	1174-1180	2003	SDR1,qHD8(t)	Sdr1*, Sdr1,Hd8(t)
20610	14513215	Septiningsih, E.M., J. Prasetiyono, E. Lubis, T.H. Tai, T. Tjubaryat, S. Moeljopawiro and S.R. McCouch	Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon.	Theor. Appl. Genet.	107	1419-1432	2003	qDTM-8-1(t) (dtm4.1),qGPP-1-1(t) (gpp1,1),qDTM-4-2(t) (dtm4.1),qDTM-7-1(t) (dtm4.1),qYLD-2-2(t) (yld2.1),qDTH-7-2,qDTH-2-4(t)(dth2.1),qDTH-2-5(t)(dth2.2),qDTH-12-2(t)(dth12.1),qDTM-4-1(t) (dtm4.1),qDTM-4-2(t) (dtm4.2),qDTM-7-1(t) (dtm7.1),qDTM-8-1(t) (dtm8.1),qPH-1-5(t) (ph1.1),qPH-4-4(t) (ph4.1),qPH-6-2(t) (ph6.1),qPH-10-1(t) (ph10.1),qPH-11-2(t) (ph11.1),qPL-1-3(t) (pl1.1),qPL-3-4(t) (pl3.1),qPL-9-2(t) (pl9.1),qDTH-7-3(t)(dth7.2),qDTH-11-3(t)(dth11.1),qPL-10-4(t) (pl10.1),qPL-10-5(t) (pl10.2),qPPL-1-1(t) (ppl1.1),qPPL-1-2(t) (ppl1.2),qPPL-2-1(t) (ppl2.1),qPPL-11-1(t) (ppl11.1),qPPL-11-2(t) (ppl11.2),qGPP-2-2(t) (gpp2.1),qGPP-3-2(t) (gpp3.1),qSPP-3-2(t)(spp3.1),qPSS-1-2(t) (pss1.1),qPSS-2-1(t) (pss2.1),qPSS-11-1(t) (pss11.1),qGPL-1-1(t) (gpl1.1),qGPL-2-1(t) (gpl2.1),qGPL-12-1(t) (gpl12.1),qGW-1-2(t) (gw1.1),qGW-2-2(t) (gw2.1),qGW-3-4(t) (gw3.1),qGW-3-5(t) (gw3.2),qGW-7-2(t) (gw7.1),qYLD-1-1(t) (yld1.1),qYLD-1-2(t) (yld1.2)	qDTM-8-1(t) (dtm4.1),qGPP-1-1(t) (gpp1,1),qDTM-4-2(t) (dtm4.1),qDTM-7-1(t) (dtm4.1),qYLD-2-2(t) (yld2.1),qDTH-7-2,qDTH-7-2(t)(dth7.1),qDTH-2-4(t)(dth2.1),qDTH-2-5(t)(dth2.2),qDTH-12-2(t)(dth12.1),qDTM-4-1(t) (dtm4.1),qDTM-4-2(t) (dtm4.2),qDTM-7-1(t) (dtm7.1),qDTM-8-1(t) (dtm8.1),qPH-1-5(t) (ph1.1),qPH-4-4(t) (ph4.1),qPH-6-2(t) (ph6.1),qPH-10-1(t) (ph10.1),qPH-11-2(t) (ph11.1),qPL-1-3(t) (pl1.1),qPL-3-4(t) (pl3.1),qPL-9-2(t) (pl9.1),qDTH-7-3(t)(dth7.2),qDTH-11-3(t)(dth11.1),qPL-10-4(t) (pl10.1),qPL-10-5(t) (pl10.2),qPPL-1-1(t) (ppl1.1),qPPL-1-2(t) (ppl1.2),qPPL-2-1(t) (ppl2.1),qPPL-11-1(t) (ppl11.1),qPPL-11-2(t) (ppl11.2),qGPP-2-2(t) (gpp2.1),qGPP-3-2(t) (gpp3.1),qSPP-3-2(t)(spp3.1),qPSS-1-2(t) (pss1.1),qPSS-2-1(t) (pss2.1),qPSS-11-1(t) (pss11.1),qGPL-1-1(t) (gpl1.1),qGPL-2-1(t) (gpl2.1),qGPL-12-1(t) (gpl12.1),qGW-1-2(t) (gw1.1),qGW-2-2(t) (gw2.1),qGW-3-4(t) (gw3.1),qGW-3-5(t) (gw3.2),qGW-7-2(t) (gw7.1),qYLD-1-1(t) (yld1.1),qYLD-1-2(t) (yld1.2)
20611	14513216	Septiningsih, E.M., K.R. Trijatmiko, S. Moeljopawiro and S.R. McCouch	Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon.	Theor. Appl. Genet.	107	1433-1441	2003	qFRR-8-1(t),qGD-4-1(t) (GD),qGD-8-1(t) (GD),qDR-10-1(t) (DR),qGG-7-1(t) (GG),qGG-12-1(t) (GG),qDYG-7-1(t) (DYG),qDYG-9-1(t) (DYG),qDYG-10-1(t) (DYG),qRG-7-1(t) (RG),qRG-12-1(t) (RG),qHR-5-1(t) (HR),qBR-1-1(t) (BR),qBR-1-2(t) (BR),qBR-2-1(t) (BR),qBR-5-1(t) (BR),qMR-10-1(t) (MR),qHR-2-1(t) (HR),qCR-3-1(t) (CR),qCR-2-1(t) (CR),qAC-6-1(t) (AC),qGC-6-1(t) (GC),qHR-1-1(t) (HR)	qFRR-8-1(t),qGD-4-1(t) (GD),qGD-8-1(t) (GD),qDR-10-1(t) (DR),qGG-7-1(t) (GG),qGG-12-1(t) (GG),qDYG-7-1(t) (DYG),qDYG-9-1(t) (DYG),qDYG-10-1(t)  (DYG),qRG-7-1(t) (RG),qRG-12-1(t) (RG),qHR-5-1(t) (HR),qBR-1-1(t) (BR),qBR-1-2(t) (BR),qBR-2-1(t) (BR),qBR-5-1(t) (BR),qMR-10-1(t) (MR),qHR-2-1(t) (HR),qCR-3-1(t) (CR),qCR-2-1(t) (CR),qAC-6-1(t) (AC),qGC-6-1(t) (GC),qHR-1-1(t) (HR)
20612		Mizobuchi, R., H. Hirabayashi, R. Kaji, Y. Nishizawa, A. Yoshimura, H. Satoh, T. Ogawa, M. Okamoto	Isolation and characterization of rice lesion-mimic mutants with enhanced resistance to rice blast and bacterial blight.	Plant Sci.	163(2)	345-353	2002	SPL7,SPL6,SPL2,SPL3,SPL8,SPL4,SPL9,SPL10,SPL1,SPL13,SPL14,SPL5,SPL12,SPL15,SPL5-2(T)	spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,spl6,spl2(bl3), spl2, bl3,spl3(bl4), spl3, bl4,spl8(bl8), spl8, bl8,spl4(bl5), spl4, bl5,spl9,spl10,Spl1, spl1(sl,bl2), sl, bl2, spl1,spl13(t), spl13*, spl13,spl14(t), spl14*, spl14,spl5(bl6,spl5-1), bl6, spl5, SF3b3,Spl12(t), Spl12*, Spl12 ,Spl15(t), Spl15*, Spl15,spl5-2(t), spl5-2
20613		Mizobuchi, R., H. Hirabayashi, R. Kaji, Y. Nishizawa, H. Satoh, T. Ogawa and M. Okamoto	Developmental responses of resistance to Magnaporthe grisea and Xanthomonas campestris pv.oryzae in lesion-mimic mutants of rice.	Breeding Science	53	93-100	2003	SPL13,SPL12,SPL5-2(T),SPL14,SPL15	spl13(t), spl13*, spl13,Spl12(t), Spl12*, Spl12 ,spl5-2(t), spl5-2,spl14(t), spl14*, spl14,Spl15(t), Spl15*, Spl15
20614		Li, Z., J. Wan, J. Xia, and M. Yano	Mapping of quantitative trait loci controlling physico-chemical properties of rice grains (Oryza sativa L.).	Breeding Science	53	209-215	2003	qAC-3-1(t) (qAC-3),qAC-4-1(t) (qAC-4),qAC-5-2(t) (qAC-5),qAC-6-2(t) (qAC-6),qASS-3-1(t) (qASS-3),qASS-6-2(t) (qASS-6a),qASS-6-3(t) (qASS-6b),qGC-1-1(t) (qGC-1),qGC-2-2(t) (qGC-2a),qGC-2-3(t) (qGC-2b),qGC-6-2(t) (qGC-6a),qGC-6-3(t) (qGC-6b)	qAC-3-1(t) (qAC-3),qAC-4-1(t) (qAC-4),qAC-5-2(t) (qAC-5),qAC-6-2(t) (qAC-6),qASS-3-1(t) (qASS-3),qASS-6-2(t) (qASS-6a),qASS-6-3(t) (qASS-6b),qGC-1-1(t) (qGC-1),qGC-2-2(t) (qGC-2a),qGC-2-3(t) (qGC-2b),qGC-6-2(t) (qGC-6a),qGC-6-3(t) (qGC-6b)
20615		Murai, M., H. Bahadur KC, T. Yoshida	Effect of the dwarfing gene d18-k on cool tolerance at booting stage under the genetic background of an extremely cool-tolerant rice line Norin-PL11, and its relation with water depth.	Breeding Science	53	237-244	2003	D18	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
20617		Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka	Roles of rice GL2-type homeobox genes in epidermis differentiation.	Breeding Science	53	245-253	2003	ROC6,ROC7,ROC8,ROC9,ROC3,ROC2,ROC1,ROC5,ROC4	Roc6(t), Roc6, GL2-6,Roc7(t), Roc7, GL2-7,Roc8(t), Roc8, GL2-8,Roc9(t), Roc9, GL2-9, OsGL2, GL2,Roc3(t), Roc3, GL2-3,Roc2(t), Roc2, GL2-2,Roc1(t), GL2-1,Roc5(t), Roc5, GL2-5, OsROC5,Roc4(t), Roc4, GL2-4
20618		Murai, M., A. Nagayama, S. Sato, H. Bahadur KC, K. Ise, T. Yoshida	High yielding F1 hybrid carrying Ur1 (Undulate rachis-1) gene in Japonica rice.	Breeding Science	53	263-269	2003	UR1	Ur1
20619		Hayashida, E., H. Satoh and Y. Nagato	ADL genes are required for genetic control of adaxial-abaxial pattern formation in rice leaves.	RGN	17	28-31	2000	ADL2,ADL1	adl2,adl1
20620		Kamiya, N., M. Ashikari, Y. Sato, Y. Nagato, H. Kitano and M. Matsuoka	Mapping of the ORGANLESS1 gene, ORL1.	RGN	18	33-34	2001	ORL1	orl1
20621	12898021	Sato, T., T. Ueda, Y. Fukuta, T. Kumagai and M. Yano	Mapping of quantitative trait loci associated with ultraviolet-B resistance in rice (Oryza  sativa L.).	Theor. Appl. Genet.	107	1003-1008	2003	qUVR-1(t),qUVR-3(t),qUVR-10(t)	qUVR-1(t),qUVR-3(t),qUVR-10(t)
20622	14614563	Ueda, T., T. Sato, H. Numa, M. Yano	Delimitation of the chromosomal region for a quantitative trait locus, qUVR-10, conferring resistance to ultraviolet-B radiation in rice (Oryza sativa L.)	Theor. Appl. Genet.	108	385-391	2004	qUVR-1(t),qUVR-3(t),qUVR-10(t)	qUVR-1(t),qUVR-3(t),qUVR-10(t)
20623	14740086	Hayashi, K., N. Hashimoto, M. Daigen, I. Ashikawa	Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus.	Theor. Appl. Genet.	108	1212-1220	2004	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
20624		Maeda, H., T. Sugisawa, H. Nemoto and Y. Sunohara	QTL analysis for rice stripe resistance in the Japanese upland rice Kanto72.	Breeding Science	54	19-24	2004	STVA,STVB	Stva(St1), St1, Stva, Stv1,Stvb(St2), St2, Stvb, Stv2
20625		Tsuchiya, T. and I. Nakamura	Disruption of GSTZ1 gene by large genetic alteration in Oryza glaberrima.	Breeding Science	54	67-73	2004	GSTZ1,GSTZ2	OsGSTZ1, GSTZ-1,OsGSTZ2, GSTZ-2
20626	14513218	Lin, H.X., M.Z, Zhu, M. Yano, J.P. Gao, Z.W. Liang, W.A. Su, X.H. Hu, Z.H. Ren, D.Y. Chao	QTLs for Na+ and K+ uptake of the shoots and roots controlling rice salt tolerance.	Theor. Appl. Genet.	108	253-260	2004	HKT8,qSDS-1(t),qSDS-6(t),qSDS-7(t),qSNC-7(t),qRNTQ-1(t),qRKC-4(t),qRKTQ-7(t),qRNC-9(t),qRKC-7(t),qSNTQ-7(t)	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,qSDS-1(t),qSDS-6(t),qSDS-7(t),qSNC-7(t),qRNTQ-1(t),qRKC-4(t),qRKTQ-7(t),qRNC-9(t),qRKC-7(t),qSNTQ-7(t)
20627	14523518	Wang, G.L., C. Wu, L. Zeng, C. He, M. Baraoidan, F.de Assis Goes da Silva, C.E. Williams, P.C. Ronald, H. Leung	Isolation and characterization of rice mutants compromised in Xa21-mediated resistance to X. oryzae pv. oryzae.	Theor. Appl. Genet.	108	379-384	2004	XA21	Xa21*, Xa21, OsXA21
20628	14605807	Lu, G., C. Jantasuriyarat, B. Zhou, G.L. Wang	Isolation and characterization of novel defense response genes involved in compatible and incompatible interaction between rice and Magnaporthe grisea.	Theor. Appl. Genet.	108	525-534	2004	PIZ,XA21,PI9	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Xa21*, Xa21, OsXA21,Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
20629	14564397	Jiang, G.H., Y.Q. He, C.G. Xu, X.H. Li, Q. Zhang	The genetic basis of stay-green in rice analyzed in a population of doubled haploid lines derived from an indica by japonica cross.	Theor. Appl. Genet.	108	688-698	2004	qRRGS-6(t) (rrgs6),qRGAF-2-1(t) (rgaf2a),qRGAF-2-2(t) (rgaf2b),qRGAF-4-1(t) (rgaf4a),qRGAF-6-1(t) (rgaf6a),qRGAF-7(t) (rgaf7),qRGAF-10(t) (rgaf10),qRGAF-3(t) (rgaf3),qRGAF-4-2(t) (rgaf4b),qRGAF-6-2(t) (rgaf6b),qRGAF-8(t) (rgaf8),qRGAS-6-1(t) (rgas6a),qRGAS-3(t) (rgas3),qRGAS-7-1(t) (rgas7a),qRGAS-7-2(t) (rgas7b),qRGAS-6-2(t) (rgas6b),qRGAS-11(t) (rgas11),qRGAS-10(t) (rgas10),qRDGF-2-2(t) (rdgf2b),qRDGF-2-3(t) (rdgf2c),qRDGF-3(t) (rdgf3),qRDGF-2-1(t) (rdgf2a),qRDGF-4(t) (rdgf4),qRDGF-8-1(t) (rdgf8a),qRDGF-9(t) (rdgf9),qRDGF-6(t) (rdgf6),qRDGF-10(t) (rdgf10),qRRGF-2(t) (rrgf2),qRRGF-10(t) (rrgf10),qRRGF-7(t) (rrgf7),qRRGF-12(t) (rrgf12),qRDGS-2-1(t) (rdgs2a),qRDGS-2-2(t) (rdgs2b),qRDGS-6(t) (rdgs6),qRDGS-8-1(t) (rdgs8a),qRDGS-8-2(t) (rdgs8b),qRDGS-3-1(t) (rdgs3a),qRDGS-3-2(t) (rdgs3b),qRDGS-7(t) (rdgs7),qRDGS-10(t) (rdgs10),qRDGF-8-2(t) (rdgf8b),qRRGS-2(t) (rrgs2),qRRGS-3(t) (rrgs3),qRRGS-7(t) (rrgs7),qRRGS-10(t) (rrgs10),qRDGF-7(t) (rdgf7)	qRRGS-6(t) (rrgs6),qRGAF-2-1(t) (rgaf2a),qRGAF-2-2(t) (rgaf2b),qRGAF-4-1(t) (rgaf4a),qRGAF-6-1(t) (rgaf6a),qRGAF-7(t) (rgaf7),qRGAF-10(t) (rgaf10),qRGAF-3(t) (rgaf3),qRGAF-4-2(t) (rgaf4b),qRGAF-6-2(t) (rgaf6b),qRGAF-8(t) (rgaf8),qRGAS-6-1(t) (rgas6a),qRGAS-3(t) (rgas3),qRGAS-7-1(t) (rgas7a),qRGAS-7-2(t) (rgas7b),qRGAS-6-2(t) (rgas6b),qRGAS-11(t) (rgas11),qRGAS-10(t) (rgas10),qRDGF-2-2(t) (rdgf2b),qRDGF-2-3(t) (rdgf2c),qRDGF-3(t) (rdgf3),qRDGF-2-1(t) (rdgf2a),qRDGF-4(t) (rdgf4),qRDGF-8-1(t) (rdgf8a),qRDGF-9(t) (rdgf9),qRDGF-6(t) (rdgf6),qRDGF-10(t) (rdgf10),qRRGF-2(t) (rrgf2),qRRGF-10(t) (rrgf10),qRRGF-7(t) (rrgf7),qRRGF-12(t) (rrgf12),qRDGS-2-1(t) (rdgs2a),qRDGS-2-2(t) (rdgs2b),qRDGS-6(t) (rdgs6),qRDGS-8-1(t) (rdgs8a),qRDGS-8-2(t) (rdgs8b),qRDGS-3-1(t) (rdgs3a),qRDGS-3-2(t) (rdgs3b),qRDGS-7(t) (rdgs7),qRDGS-10(t) (rdgs10),qRDGF-8-2(t) (rdgf8b),qRRGS-2(t) (rrgs2),qRRGS-3(t) (rrgs3),qRRGS-7(t) (rrgs7),qRRGS-10(t) (rrgs10),qRDGF-7(t) (rdgf7)
20630	14624339	Fujino, K., H. Sekiguchi, T. Sato, H. Kiuchi, Y. Nonoue, Y. Takeuchi, T. Ando, S.Y. Lin, M. Yano	Mapping of quantitative trait loci controlling low-temperature germinability in rice (Oryza sativa L.).	Theor. Appl. Genet.	108	794-799	2004	qLTG-3-2(t),qLTG-3-1(t),qLTG-4-3(t)	qLTG-3-2(t),qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5,qLTG-4-3(t)
20631	15118822	Gu, K., D. Tian, F. Yang, L. Wu, C. Sreekala, D. Wang, G.L. Wang, Z. Yin	High-resolution genetic mapping of Xa27(t), a new bacterial blight resistance gene in rice, Oryza sativa L.	Theor. Appl. Genet.	108	800-807	2004	XA27	Xa27(t), Xa27(t)*, Xa27
20632	14634728	Armstead, I.P., L.B. Turner, M. Farrell, L. Skot, P. Gomez, T. Montoya, I.S. Dornnison, I.P. King, M.Q.  Humphreys	Synteny between a major heading date QTL in perennial ryegrass (Lolium perenne L.) and the Hd3 heading-date locus in rice.	Theor. Appl. Genet.	108	822-828	2004	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20633		Yoshimura, A. and Y. Nagato	Report of  the Committee on Gene Symbolization, Nomenclature and Linkage Groups. I. Registration of new gene symbols.	RGN	20	5-8	2003	RHZ2,SD1,RHZ3,WBPH6,PI34	Rhz2,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Rhz3,Wbph6,Pi34, RMg71, Pi24(t)
20634	12582657	Zenbayashi, K., T. Ashizawa, T. Tani, S. Koizumi	Mapping of the QTL (quantitative trait locus) conferring partial resistance to leaf blast in rice cultivar Chubu 32.	Theor. Appl. Genet.	104	547-552	2002	PI34	Pi34, RMg71, Pi24(t)
20635	12642667	Hu, F.Y., D.Y. Tao, E. Sacks, B.Y. Fu, P. Xu, J. Li, Y. Yang, K. McNally, G.S. Khush, A.H. Paterson, Z.K. Li	Convergent evolution of pereniality in rice and sorghum.	Proc. Natl. Acad. Sci. U.S.A.	100	4050-4054	2003	RHZ2,RHZ3,qRN-3 (t) (QRn3),qRN-5 (t) (QRn5),qRN-10 (t) (QRn10),qRN-6 (t) (QRn6),qRN-2 (t) (QRn2),qRN-7 (t) (QRn7),qRL-1(t) (QRl1),qRL-6(t) (QRl6),qRL-7(t) (QRl7),qRBD-2(t) (QRbd2)	Rhz2,Rhz3,qRN-3 (t) (QRn3),qRN-5 (t) (QRn5),qRN-10 (t) (QRn10),qRN-6 (t) (QRn6),qRN-2 (t) (QRn2),qRN-7 (t) (QRn7),qRL-1(t) (QRl1),qRL-6(t) (QRl6),qRL-7(t) (QRl7),qRBD-2(t) (QRbd2)
20636		Matsushita, S., T. Kurakazu, Sobrizal, K. Doi and A. Yoshimura	Mapping of genes for awn in rice using Oryza meridionalis introgression lines.	RGN	20	17-18.	2003	AN6,AN7,AN8,AN9,AN10,AN6-MER	An6, An6(t), An6*,An7(t), An7(t)*,An8(t), An8(t)*, An8,An9, An9(t)*,An10, An10*,An6-mer
20637		Takano-Kai, N., C. Anno, T. Kubo and A. Yoshimura	RFLP mapping of traits for naturally occurred variation of rice. (in Japanese)	Breeding Research	3 (Suppl. 1)	93	2001	AN6	An6, An6(t), An6*
20638		Matsushita, S., P.L. Sanches, Sobrizal, K. Doi and A. Yoshimura	Identification of new alleles of awnness genes, An7 and An8, in rice using Oryza glumaepatula introgression lines.	RGN	20	19-20	2003	AN7,AN8,AN7-GLUM,AN8-GLUM	An7(t), An7(t)*,An8(t), An8(t)*, An8,An7-glum,An8-glum
20639		Sunohara, H. and H. Kitano	New dwarf mutant controlled by a dominant gene, Twisted dwarf1.	RGN	20	20-22	2003	TD1	Td1(t)
20640		Nagasawa, N., Y. Nagato, H. Sakai	Physical mapping of the REDUCED EMBRYO2 gene.	RGN	20	22-24	2003	RE2	re2
20641		Taramino, G. J. Allen, S.K. Hong, N. Nagasawa, Y. Nagato, H. Sakai	Mapping of GOLIATH, a new gene controlling embryo size in rice.	RGN	20	24-27	2003	GO	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7
20642		Takabe, E., N. Sentoku, Y. Nagato, M. Matsuoka and H. Kitano	Morphological classification of twelve rice mutants that cease embryogenesis at early globular stages.	RGN	20	27-28	2003	GLE2,GLE3,GLE4,GLE1	gle2*, gle2,gle3*, gle3,gle4*, gle4,gle1*. gle1
20643		Miura, K., M. Ashikari, M. Matsuoka and Y.I.C. Hsing	Mapping of the lazy gene, la.	RGN	20	29-30	2003	LA	la
20644	0	Wang, C., B. He, M. Xun, J. Wan	Tagging and mapping of a gene controlling yellowish-green leaf.	RGN	20	35-36	2003	YL	yl(t), yl
20645		Sato, M., T. Takemoto, T. Kumamaru, H. Satoh	Mapping of glup4 gene for highly accumulatinig glutelin precursor polypeptides in rice.	RGN	20	42-43	2003	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a
20646	0	Sato, M., D. Ishihara, H.D. Tian, Y. Takemoto, T. Kumamaru, H. Satoh	Gene mapping and immunocytochemistry of rice glup6 mutant.	RGN	20	43-45	2003	GLUP6	glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
20647		Hou, M.Y., L. Jiang, C.M. Wang and J.M. Wan	Detection and analysis of QTLs for low temperature germinability in rice (Oryza sativa L.).	RGN	20	52-55	2003	qLTG-11(t),qLTG-2-2(t) (qLTG-2),qLTG-7(t),qLTG-12(t)	qLTG-11(t),qLTG-2-2(t) (qLTG-2),qLTG-7(t),qLTG-12(t)
20648		Murai, M. and H. Yamamoto	Allelic relationships and height effects of rice dwarfing genes from cvv. Dee-geo-woo-gen, Calrose 76 and Reimei determined in a constant genetic background.	SABRAO Journal	33(1)	21-30	2001	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20649		Futsuhara, Y., F. Kikuchi and J.N. Rutger	Gene symbols for dwarfness.	RGN	3	8-10	1986	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20650	12773633	Itoh, K., H. Ozaki, K. Okada, H. Hori, Y. Takeda and T. Mitsui	Introduction of Wx transgene into rice wx mutants leads to both high- and low-amylose rice.	Plant Cell Physiol.	44	473-480	2003	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20651	14519768	Kamiya, N., A. Nishimura, N. Sentoku, E. Takabe, Y. Nagato, H. Kitano and M. Matsuoka	Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis.	Plant Cell Physiol.	44	875-883	2003	GLE4	gle4*, gle4
20656	14701935	Sonoda, Y., A. Ikeda, S. Saiki, T. Yamaya and J. Yamaguchi	Feedback regulation of the ammonium transporter gene family AMT1 by glutamine in rice.	Plant Cell Physiol.	44(12)	1396-1402	2003	AMT1;2,AMT1;1,AMT1;3	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
20658	9112771	Cho, H.T. and H. Kende	Expansins in deepwater rice internodes	Plant Physiol.	113	1137-1143	1997	EXPA2,EXPA1	OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
20660	9596635	Wang, G.L., D.L. Ruan, W.Y. Song, S. Sideris, L. Chen, L.Y. Pi, S. Zhang, Z. Zhang, C. Fauquet, B.S. Gaut, M.C. Whalen and P.C. Ronald	Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution.	Plant Cell	10	765-779	1998	XA21D	Xa21D
20661	9724697	Itoh, J., A. Hasegawa, H. Kitano, and Y. Nagato	A recessive heterochronic mutation, plastochron1, shortens the plastochron and elongates the vegetative phase in rice.	Plant Cell	10	1511-1521	1998	PLA1	pla1, OsPLA1, plt1, CYP78A11
20664	11006334	Yamamuro, C., Y. Ihara, X. Wu, T. Noguchi, S. Fujioka, S. Takatsuto, M, Ashikari, H. Kitano and M. Matsuoka	Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint.	Plant Cell	12	1591-1605	2000	D61	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
20666	11090206	Orback, M.J., L. Farrall, J.A. Sweigard, F.G. Chumley and B. Valent	A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta.	Plant Cell	12	2019-2032	2000	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
20669	11340177	Ikeda, A., M. Ueguchi-Tanaka, Y. Sonoda, H. Kitano, M. Koshioka, Y. Futsuhara, M. Matsoka, and J. Yamaguchi	slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8.	Plant Cell	13	999-1010	2001	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
20670	11251094	Takano, M., H. Kanegae, T. Shinomura, A. Miyao, H. Hirochika, and M. Furuya	Isolation and characterization of rice phytochrome A mutants.	Plant Cell	13	521-534	2001	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
20671	11826299	Itoh,H., Ueguchi-Tanaka,M., Sato,Y., Ashikari,M. and Matsuoka,M.	The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei.	Plant Cell	14(1)	57-70	2002	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
20672		Ikeda, A., S. Tanaka, J. Yamaguchi, and Y. Futsuhara	Character expression and mode of inheritance of a slender mutant with constitutive gibberellin-response in rice. [Japanese]	Sci. Rep. Fac. Agric. Meijo Univ.	35	7-13	1999	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
20676	10022841	Sato, Y., N. Sentoku, Y. Miura, H. Hirochika, H. Kitano and M. Matsuoka	Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.	EMBO J.	18(4)	992-1002	1999	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20678	11549765	Nagasaki, H., T. Sakamoto, Y. Sato, and M. Matsuoka	Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.	Plant Cell	13	2085-2098	2001	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20679	12897251	Miyao, A., K. Tanaka, K. Murata, H. Sawaki, S. Takeda, K. Abe, Y. Shinozuka, K. Onosato, and H. Hirochika	Target site specificity of the Tos17 retrotransposon shows a preference for insertion within genes and against insertion in retrotransposon-rich regions of the genome.	Plant Cell	15	1771-1780	2003	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
20681		Qian, Q., Y.H. Li, D. Zeng, S. Teng, Z. Wang, X. Li, Z. Dong, N. Dai, L. Sun, and J. Li	Isolation and genetic characterization of a fragile plant mutant rice (Oryza sativa L).	Chin. Sci. Bull.	46	2082-2085	2001	BC1	bc1, bc-1, OsBC1, CWA1, FP1
20683	14615594	Hong, Z., M. Ueguchi-Tanaka, K. Umemura, S. Uozu, S. Fujioka, S. Takatsuto, S. Yoshida, M. Ashikari, H. Kitano, and M. Matsuoka	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450.	Plant Cell	15	2900-2910	2003	D2	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 
20684	14688295	Kaneko, M., Y. Inukai, M. Ueguchi-Tanaka, H. Itoh, T. Izawa, Y. Kobayashi, T. Hattori, A. Miyao, H. Hirochika, M. Ashikari, and M. Matsuoka	Loss-of-function mutations of the rice GAMYB gene impair -amylase expression in aleurone and flower development.	Plant Cell	16	33-44	2004	GAMYB	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB
20687	15208396	Malcomber, S.T., and E.A. Kellogg	Heterogeneous expression patterns and separate roles of the SEPALLATA gene LEAFY HULL STERILE1 in grasses.	Plant Cell	16	1692-1706	2004	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
20694	11027362	Ueguchi-Tanaka, M., Y. Fujisawa, M. Kobayashi, M. Ashikari, Y. Iwasaki, H. Kitano and M. Matsuoka	Rice dwarf mutant d1, which is defective in the  subunit of the heterotrimeric G protein, affects gibberellin signal transduction.	Proc. Natl. Acad. Sci. U.S.A.	97	11638-11343	2000	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
20696	11149940	Ono, E., H.L. Wong, T. Kawasaki, M. Hasegawa, O. Kodama, and K. Shimamoto	Essential role of the small GTPase Rac in disease resistance of rice.	Proc. Natl. Acad. Sci. U.S.A.	98	759-764	2001	RAC1	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
20698	12237405	Suharsono, U., Y. Fujisawa, T. Kawasaki, Y. Iwasaki, H. Satoh and K. Shimamoto	The heterotrimeric G protein  subunit acts upstream of the small GTPase Rac in disease resistance of rice.	Proc. Natl. Acad. Sci. U.S.A.	99	13307-13312	2002	PIA,D1,RAC1	Pi a, Pia, Pi-a, Pia-1, Pia-2,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
20702	12601171	Chen, H., S. Wang, Y. Xing, C. Xu, P.M. Hayes and Q. Zhang	Comparative analyses of genomic locations and race specificities of loci for quantitative resistance to Pyricularia grisea in rice and barley.	Proc. Natl. Acad. Sci. U.S.A.	100	2544-2549	2003	qRBR-1-2 (t) (rbr1b),qRBR-1-3 (t) (rbr1c),qRBR-1-4 (t) (rbr1d),qRBR-2 (t) (rbr2),qRBR-3 (t) (rbr3),qRBR-7-1 (t) (rbr7a),qRBR-7-2 (t) (rbr7b),qRBR-8 (t) (rbr8),qRBR-9-1 (t) (rbr9a),qRBR-9-2 (t) (rbr9b),qRBR-1-1 (t) (rbr1a),qRBR-9-3 (t) (rbr9c)	qRBR-1-2 (t) (rbr1b),qRBR-1-3 (t) (rbr1c),qRBR-1-4 (t) (rbr1d),qRBR-2 (t) (rbr2),qRBR-3 (t) (rbr3),qRBR-7-1 (t) (rbr7a),qRBR-7-2 (t) (rbr7b),qRBR-8 (t) (rbr8),qRBR-9-1 (t) (rbr9a),qRBR-9-2 (t) (rbr9b),qRBR-1-1 (t) (rbr1a),qRBR-9-3 (t) (rbr9c)
20706	10934011	Scarpella, E., S. Rueb, K.J.M.Boot, J.H.C. Hoge and A.H. Meijer	A role for the rice homeobox gene Oshox1 in provascular cell fate commitment.	Development	127	3655-3669	2000	HOX1	Oshox1, OsHox1
20707	11782419	Asai, K., N. Satou, H. Sasaki, H. Satoh and Y. Nagato	A rice heterochronic mutant, mori1, is defective in the juvenile-adult phase change.	Development	129	265-273	2002	MORI1	mori1
20708	12505996	Scarpella, E., S. Rueb and A.H. Meijer	The RADICLELESS1 gene is required for vascular pattern formation in rice.	Development	130	645-658	2003	RAL1	ral1*, ral1
20710	12649483	Sasaki, A., H. Itoh, K. Gomi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, D.H. Jeong, G. An, H. Kitano, M. Ashikari, M. Matsuoka	Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant.	Science	299 (5614)	1896-1898	2003	GID2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SLR1	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsSkp1,OsSkp3,OsSkp4,OsSkp6,OsSkp7,OsSkp8,OsSkp9,OsSkp10,OsSkp11,OsSkp12,OsSkp13,OsSkp14,OsSkp2,OsSkp5,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
20711	12154129	Izawa, T., T. Oikawa, N. Sugiyama, T. Tanisaka, M. Yano and K. Shimamoto	Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice.	Genes Dev.	16	2006-2020	2002	RFT1,FTL1,HD3A,FTL4,SE1,FTL8,SE5,FTL6,FTL5,FTL7	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,FTL, FT-L1, OsFTL1, FTL1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsFT, osFT, FT-L 4, OsFTL4, FT-L4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 8, OsFTL8,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,FT-L 6, OsFTL6, FT-L6,FT-L 5, OsFTL5, FT-L5,FT-L 7, OsFTL7
20712	15078816	Doi, K., T. Izawa, T. Fuse, U. Yamanouchi, T. Kubo, Z. Shimatani, M. Yano, and A. Yoshimura	Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1.	Genes Dev.	18	926-936	2004	SE1,EF1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
20713	9670561	Cai, X.L., Z.Y. Wang, Y.Y. Xing, J.L. Zhang and M.M. Hong	Aberrant splicing of intron 1 leads to the heterogeneous 5'UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content.	Plant J.	14(4)	459-465	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20714	9744101	Isshiki, M., K. Morino, M. Nakajima, R.J. Okagaki, S.R. Wessler, T. Izawa and K. Shimamoto	A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5' splice site of the first intron.	Plant J.	15(1)	133-138	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20715	9807819	Cho, H.T. and H. Kende	Tissue localization of expansins in deepwater rice.	Plant J.	15(6)	805-812	1998	EXPA4,EXPA3,EXPA2,EXPA1	OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
20716	10205906	Takahashi, A., T. Kawasaki, K. Henmi, K. Shii, O. Kodama, H. Satoh and K. Shimamoto	Lesion mimic mutants of rice with alterations in early signaling events of defense.	Plant J.	17(5)	535-545	1999	CDR1,CDR3,CDR2,PR10A	cdr1, cdr1*,Cdr3, Cdr3*,cdr2, cdr2*,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
20718	10417713	Kawasaki, T., S. Okumura, N. Kishimoto, H. Shimada, K. Higo and N. Ichikawa	RNA maturation of the rice SPK gene may involve trans-splicing.	Plant J.	18(6)	625-632	1999	SPK	CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23
20721	10571882	Century, K.S., R.A. Lagman, M. Adkisson, J. Morlan, R. Tobias, K. Schwartz, A. Smith, J. Love, P.C. Ronald and M.C. Whalen	Developmental control of Xa21-mediated disease resistance in rice.	Plant J.	20 (2)	231-236	1999	XA21	Xa21*, Xa21, OsXA21
20722	10849355	Izawa, T., T. Oikawa, S. Tokutomi, K. Okuno and K. Shimamoto	Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant).	Plant J.	22 (5)	391-399	2000	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
20724	10972871	Isshiki, M., M. Nakajima, H. Satoh and K. Shimamoto	dull: rice mutants with tissue-specific effects on the splicing of the waxy pre-mRNA.	Plant J.	23 (4)	451-460	2000	DU1,DU2,WX1	du1,du2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
20726	12148532	Nakagawa, M., K. Shimamoto and J. Kyozuka	C2, rice TERMIAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase transition and altered panicle morphology in rice.	Plant J.	29 (6)	743-750	2002	RCN2,RCN1	Rcn2, OsRCN2,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1
20730		Wan, X.Y., C.C. Su, W.B. Shen, H.Q. Zhai, H. Yasui, A. Yoshimura and J.M. Wan	Stable expression of QTL for cooking and eating quality (Oryza sativa L.) in CSSLs population.	RGN	20	57-60	2003	qLT-8,qTD-6,qTD-8,qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qIVOE-8,qAC-8	qLT-8,qTD-6,qTD-8,qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qIVOE-8,qAC-8
20731		Xue, Y., L. Jiang, J.F. Ma, H.Q. Zhai and J.M. Wan	Identification of quantitative trait loci for Al toxicity tolerance in rice (Oryza sativa L.).	RGN	20	60-62	2003	qRRE-1,qRRE-5,qRRE-8,qRRE-9,qRRE-11	qRRE-1,qRRE-5,qRRE-8,qRRE-9,qRRE-11
20732		Jiang, S.M., T. Imbe, N. Horiswe, L.L. Xu and J.M. Wan	Expression analyses of glutelin genes in low glutelin rice mutant LGC-1.	RGN	20	62-64	2003	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
20733		Miyahara, K.	Analysis of LGC-1. Low glutelin mutant of rice.	Gamma Field Symposia	38	43-52	1999	LGC1	Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
20734		Murai, M., K. Maruyama and F. Kikuchi	Gene symbol registration No.155. Gene symbol: sd1-d, sd1-r. In: Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups. I. Registration of new gene symbols.(Yoshimura, A. and Y. Nagato)	RGN	20	5	2003	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20735		Kawano, R., T. Mochizuki, H. Yasui, K. Doi and A. Yoshimura	QTL analysis for floating ability in rice.	RGN	20	74-77	2003	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12),qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12),qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)
20736		Takahashi, U. and T. Mochizuki	Varietal differences in internode elongation ability of deepwater rice.	Japan. J. Crop Sci.	69 (Extra issue 1)	198-199	2000	qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)	qRIE-1 (qRIE 1),qRIE-12 (qRIE 12)
20737		Inouye, J., T. Kyuragi and V.T. Xuan	On the growth habits of floating, single- and double-transplanted rice plants in the Mekong Delta III. Ability of internode elongation of floating rice.	Japan. J. Trop. Agr.	22	67-70	1978	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12)	qLEI-3 (qLEI 3),qLEI-12 (qLEI 12)
20738		Fujita, D., K. Doi, A. Yoshimura and H. Yasui	Mappiing of a new resistance gene for green rice leafhopper introgressed from Oryza rufipogon Griff. into cultiavted rice, Oryza sativa L.	RGN	20	79-80	2003	GRH5	Grh5
20739		Murai, M., H. Bahadur KC, N. Gima	Pleiotropic effect of the dwarfing gene d18-k on cool tolerance at booting stage under the genetic background of an extremely cool-tolerant line Norin-PL8 in rice.	Plant Breeding	122 (5)	410-415	2003		
20740		Murai, M., S. Hirose, S. Sato, M. Takeda	Effects of dwarfing genes from Dee-geo-woo-gen and other varieties on cool temperature tolerance at booting stage in rice.	Japan. J. Breed.	41	241-254	1991	D18,SD1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20741		Murai, M., S. Hirose, A. Kusutani, N. Shinbashi, Y. Nishikawa	Relation between cool temperature damage at booting stage and water depth in dwarf lines of rice.	Japan. J. Breed.	41	581-593	1991	D18,SD1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20742		Murai, M., S. Hirose, N. Suzuki, M. Yamane, S. Sato	Effects of the dwarfing gene from Dee-geo-woo-gen and three others on high temperature tolerance at flowering.	Japan. J. Breed.	42	91-102	1992	SD1,D18	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
20743		Murai, M., S. Hirose, S. Sato	Effect of the dwarfing gene from Dee-geo-woo-gen and others on cool temperature tolerance at flowering stage in rice.	Japan. J. Breed.	42	811-823	1992	D18,SD1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
20744		Yamasaki, M., A. Yoshimura and H. Yasui	QTL mapping of rice ovicidal response to two planthopper species.	RGN	20	81-83	2003	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-2,qEM-7-1,qEM-8,qEM-2	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-2,qEM-7-1,qEM-8,qEM-2
20745		Yamasaki, M., A. Yoshimura and H. Yasui	Mapping of quantitative trait loci of ovicidal response to brown planthopper (Nilaparvata lugens Stal) in rice (Oryza sativa L.).	Breeding Science	50	291-296	2000	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-1,qEM-7-2,qEM-8,qEM-2	qGWL-6,qGWL-10,qGWL-5,qEM-3,qEM-6,qEM-7-1,qEM-7-2,qEM-8,qEM-2
20746		Su, C.C., J. Wan, H.Q. Zhai, C.M. Wang and L.H. Sun	A new locus for resistance to brown plant hopper in DV85, an indica rice (Oryza sativa L.).	RGN	20	83-85	2003	qBPH11	Qbph11
20747		Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar	Appraisal of bacterial leaf blight resistance genes in India.	RGN	20	96-98	2003	XA21,XA5,XA18,XA8,XA14,XA12,XA10,XA11,XA4,XA7,XA1,XA3,XA13	Xa21*, Xa21, OsXA21,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa18,xa8,Xa14,Xa12(Xa kg), Xakg, Xa12,Xa10, Xa-10,Xa11(Xa pt), Xa11, Xapt,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa7,Xa1(Xe), Xe, Xa1, Xa-1,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
20748		Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar	Evaluation of blast resistance genes in India.	RGN	20	94-96	2003	PIZ,PIK,PITA,PII,PII2,PI3,PI12,PI30,PI9,PI5,PIA	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi i, Pii, Pi-i, Pii(t),Pi i2, Pii2, Pii2(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi-30(t), Pi30(t),Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi a, Pia, Pi-a, Pia-1, Pia-2
20750	15509842	Kusumi, K.,  A. Yara, N. Mitsui, Y. Tozawa and K. Iba	Characterization of a rice nuclear-encoded plastid RNA polymerase gene OsRpo Tp.	Plant Cell Physiol.	45 (9)	1194-1201	2004	RPOTM,V1,RPOTP	OsRpoTm,v1, NUS1,OsRpo Tp, OsRpoTp, NEP, RpoTp
20751	15356324	Sugimoto, H., K. Kusumi, Y. Tozawa, J. Yazaki, N. Kishimoto, S. Kikuchi and K. Iba	The virescent-2, mutation inhibits translation of plastid transcripts for the plastid genetic system at an early stage of chloroplast differentiation.	Plant Cell Physiol.	45	985-996	2004	V2,RPOTP	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,OsRpo Tp, OsRpoTp, NEP, RpoTp
20755	14988485	Fukuda, A., A. Nakamura, A. Tagiri, H. Tanaka, A. Miyao, H. Hirochika and Y. Tanaka	Function, intracellular localization and the importance in salt tolerance of a vacuolar Na+/H+ antiporter from rice.	Plant Cell Physiol.	45 (2)	146-159	2004	NHX1	OsNHX1
20757	15295073	Choi, D., J.H. Kim and H. Kende	Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.).	Plant Cell Physiol.	45 (7)	897-904	2004	GS2,GRF10,GRF7,GRF7,GRF12,GRF8,GRF3,GRF5,GRF6,GRF2,GRF9,GRF11,GRF1	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,OsGRF10,OsGRF7,OsGRF7,OsGRF12,OsGRF8,OsGRF3,OsGRF5,OsGRF6,OsGRF2,OsGRF9,OsGRF11,OsGRF1
20767		Pelucchi, N., F. Fornara, C. Favalli, S. Masiero, C. Lago, M. Enrico Pe, L. Colombo and M.M. Kater	Comparative analysis of rice MADS-box genes expressed during flower development.	Sex. Plant Reprod.	15	113-122	2002	MADS22,MADS26,PAP2	OsMADS22, RMD1,OsMADS26, FDRMADS3, RMADS220,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 
20768	10382970	Shinozuka, Y., S. Kojima, A. Shomura, H. Ichimura, M. Yano, K. Yamamoto and T. Sasaki	Isolation and characterization of rice MADS box gene homologues and their RFLP mapping.	DNA Res.	6	123-129	1999	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208
20769	12581301	Matsumura, H., S. Nirasawa, A. Kiba, N. Urasaki, H. Saitoh, M. Ito, M. Kawai-Yamada, H. Uchimiya and R. Terauchi	Overexpression of Bax inhibitor suppresses the fungal elicitor-induced cell death in rice (Oryza sativa L.) cells.	Plant J.	33 (3)	425-434	2003	BL1	bl1
20770	12581309	Takeda, T., Y. Suma, M. Suzuki, H. Kitano, M. Ueguchi-Tanaka, M. Ashikari, M. Matsuoka and C. Ueguchi	The OsTB1 gene negatively regulates lateral branching in rice.	Plant J.	33 (3)	513-520	2003	FC1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
20771	12581311	Jang, I.C., Y.M. Park, S.I. Song, H.J. Kwon, B.H. Nahm and J.K. Kim	Structure and expression of the rice class-1 type histone deacetylase genes OsHDAC1-3: OsHDAC1 overexpression in transgenic plants leads to increased growth rate and altered architecture.	Plant J.	33 (3)	531-541	2003	HDAC3,HDAC2,HDAC1	OsHDAC3, HDA703,OsHDAC2, HDA710, OsHDA710 ,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702
20773	12834406	Kaneko, M., H. Itoh, Y. Inukai, T. Sakamoto, M. Ueguchi-Tanaka, M. Ashikari and M. Matsuoka	Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants?	Plant J.	35 (1)	104-115	2003	SLR1,D18,SD1,GA20OX1,GA3OX1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsGA3ox1, GA3ox1, OsGA3OX1
20774	12904206	Kamiya, N., H. Nagasaki, A. Morikami, Y. Sato and M. Matsuoka	Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specefically expressed in the central cells of a quiescent center in the root apical meristem.	Plant J.	35 (4)	429-441	2003	QHB	OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9
20777		Arase, S., K. Fujita, T. Uehara, Y. Honda and J. Isota	Light-enhanced resistance to Magnaporthe grisea infection in the rice Sekiguchi lesion mutants.	J. Phytopathology	148	197-203	2000	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL
20779		Sekiguchi, Y. and T. Furuta	On a rice mutant showing particular reaction to some spotting disease. Preliminary report.	Ann. Phytopath. Soc. Japan	30	71-72	1965	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL
20780	14535886	Ueno, M., H. Shibata, J. Kihara, Y. Honda and S. Arase	Increased tryptophan decarboxylase and monoamine oxidase activities induce Sekiguchi lesion formation in rice infected with Magnaporthe grisea.	Plant J.	36 (2)	215-228	2003	_,TYDC,SL	MAO,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL
20781	14617093	Inoue, H., K. Higuchi, M. Takahashi, H. Nakanishi, S. Mori and N.K. Nishizawa	Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron.	Plant J.	36 (3)	366-381	2003	NAS2,NAS3,NAS1	OsNAS2,OsNAS3,OsNAS1
20785	14756772	Gomi, K., A. Sasaki, H. Itoh, M. Ueguchi-Tanaka, M. Ashikari, H. Kitano and M. Matsuoka	GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice.	Plant J.	37 (4)	626-634	2004	SLR1,_,_,_,GID2	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsSkp2,OsSkp5,OsSkp15,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e
20786	15144377	Lee, S. J. Kim, J.J. Han, M.J. Han and G. An	Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice.	Plant J.	38 (5)	754-764	2004	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208
20787	15255870	Koike, S., H. Inoue, D. Mizuno, M. Takahashi, M. Nakanishi, S. Mori and N.K. Nishizawa	OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem.	Plant J.	39 (3)	415-424	2004	YSL11,YSL14,YSL5,YSL10,YSL7,YSL6,YSL12,YSL4,YSL16,YSL17,YSL8,YSL3,YSL9,YSL13,YSL18,YSL1,YSL15,YSL2	OsYSL11,OsYSL14, OsYs5,OsYSL5, OsYs9 ,OsYSL10,OsYSL7, OsYs4,OsYSL6, OsYs8 ,OsYSL12, OsYs11 ,OsYSL4, OsYs17 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL17, OsYs18 ,OsYSL8, OsYs3 ,OsYSL3, OsYs16 ,OsYSL9, OsYs13 ,OsYSL13, OsYs12 ,OsYSL18, OsYs2 ,OsYSL1, OsYs1,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 
20788	15075394	Sakamoto, T., K. Miura, H. Itoh, T. Tatsumi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, G.K. Agrawal, S. Takeda, K. Abe, A. Miyao, H. Hirochika, H. Kitano, M. Ashikari and M. Matsuoka	An overview of gibberellin metabolism enzyme genes and their related mutants in rice.	Plant Physiol.	134	1642-1653	2004	GA2OX2,GA20OX1,CPS2,SD1,GA2OX3,KS1,CPS1,D35,KAO,KS9,KO3,KO5,CPS3,GA3OX1,GA20OX4,KO4,KS5,KS3,KS6,KS8,KO1,GA20OX3,KS7,SBI,GA2OX1,CPS4,KS2,D18,KS4	OsGA2ox2, ga2ox 2, OsGA2ox-2,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,OsKS9, KS9, KSL9, OsKSL9,OsKO3, OsKOL3,OsKO5, OSKOL5, KOS2, CYP701A9,OsCPS3,OsGA3ox1, GA3ox1, OsGA3OX1,OsGA20ox4, ga20ox4,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsGA20ox3, ga20ox3,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsKS2, KS2, KSL2, OsKSL2, OsTPS27,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16
20791	12700762	Hayama, R., Yokoi, S., Tamaki, S., Yano, M. and Shimamoto, K.	Adaptation of photoperiodic control pathways produces short-day flowering in rice.	Nature	422	719-722	2003	SE1,GI,HD3A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsGI, Gi, Os-GI,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
20792	15316288	Itoh, H., Tatsumi, T., Sakamoto, T., Otomo, K., Toyomasu, T., Kitano, H., Ashikari, M., Ichikawa, S. and Matsuoka, M.	A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase.	Plant Mol. Biol.	54	533-547	2004	KO1,KO3,KO5,D35,KAO,KO4	OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsKO3, OsKOL3,OsKO5, OSKOL5, KOS2, CYP701A9,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2
20793	11536429	Ito, Y., Eiguchi, M. and Kurata, N.		Genesis	30	231-238	2001	OSH1,OSH6,OSKN2,OSH15	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsH6, HOS16,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20794	9869408	Kang, H.-G., Jeon, J.-S., Lee, S. and An, G.	Identification of class B and class C floral organ identity genes from rice plants.	Plant Mol. Biol.	38	1021-1029	1998	MADS4	OsMADS4, PI1
20797	12407188	Kojima, S., Takahashi, Y., Kobayashi, Y., Monna, L., Sasaki, T., Araki, T. and Yano, M.		Plant Cell Physiol.	43	1096-1105	2002	HD3A,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
20798	11237465	Komatsu, M., Maekawa, M., Shimamoto, K. and Kyozuka, J.	The LAX1 and FRIZZY PANICLE 2 genes determine the inflorescence architecture of rice by controlling rachis-branch and spikelet development.	Dev. Biol.	231	364-373	2001	FZP,LAX1	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
20799	8104574	Matsuoka M, Ichikawa H, Saito A, Tada Y, Fujimura T, Kano-Murakami Y.	Expression of a rice homeobox gene causes altered morphology of transgenic plants.	Plant Cell	5(9)	1039-1048	1993	OSH1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
20800	12427982	Mori, M., Nomura, T., Ooka, H., Ishizuka, M., Yokka, T. et al.	Isolation and characterization of a rice dwarf mutant with a defect in brassinosteroid biosynthesis.	Plant Physiol.	130	1152-1161	2002	BRD1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
20802	10753522	Sentoku, N., Sato, Y. and Matsuoka, M.		Dev. Biol.	220	358-364	2000	OSH1,OSH6,OSKN2,OSH43,OSH15	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsH6, HOS16,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsH43, H43,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
20803	15509765	Suzaki, T., Sato, M., Ashikari, M., Miyoshi, M., Nagato, Y. and Hirano, H.-Y.	The gene FLORAL ORGAN NUMBER1 regulates floral meristem size in rice and encodes a leucine-rich repeat receptor kinase orthologous to Arabidopsis CLAVATA1.	Development	131	5649-5657	2004	FON1	OsFON1, fon1, OsRLCK219, RLCK219
20804	11743085	Yano, M., Kojima, S., Takahashi, Y, Lin, H. and Sasaki, T.	Genetic control of flowering time in rice, a short-day plant.	Plant Physiol.	127	1425-1429	2001	HD3A,SE1,HD6,HD5,HD4,HD7,HD9,qHD8(t),HD2	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,Hd4(t), qHD4(t), qHD4,Hd7(t), qHD7(t),Hd9(t), qHD9(t),Hd8(t),Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
20810	15071728	Liu, Z.L., F.P. Han, M. Tan, X.H. Shan, Y.Z. Dong, X.Z. Wang, G. Fedak, S. Hao and B. Liu	Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions.	Theor. Appl. Genet.	109 (1)	200-209	2004	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
20812	15114474	Saito, K., Y. Hayano-Saito, W. Maruyama-Funatsuki, Y. Sato and A. Kato	Physical mapping and putative candidate gene identification of a quantitative trait locus Ctb1 for cold tolerance at the booting stage of rice.	Theor. Appl. Genet.	109 (3)	515-522	2004	qCTB-4-1(t) (Ctb-1, Ctb1)	qCTB-4-1(t) (Ctb-1, Ctb1)
20813	15088086	Zhai, W., C. Chen, X. Zhu, X. Chen, D. Zhang, X. Li and L. Zhu	Analysis of T-DNA-Xa21 loci and bacterial blight resistance effects of the transgene Xa21 in transgenic rice.	Theor. Appl. Genet.	109 (3)	534-542	2004	XA21	Xa21*, Xa21, OsXA21
20814	15105992	Aluko, G., C. Martinez, J. Tohme, C. Castano, C. Bergman and J.H. Oard	QTL mapping of grain quality traits from the interspecific cross Oryza sativa x O. glaberrima.	Theor. Appl. Genet.	109 (3)	630-639	2004	qBR-1(t) (br1),qBR-7(t) (br7),qBR-8(t) (br8),qHR-1-2(t) (hr1),qHR-3(t) (hr3),qHR-6(t) (hr6),qHR-8(t) (hr8),qHR-11(t) (hr11),qRB-2(t) (rb2),qRB-4(t) (rb4),qRB-7(t) (rb7),qRB-10(t) (rb10),qMR-5(t) (mr5),qMR-7(t) (mr7),qAMY-3(t) (amy3),qAMY-6(t) (amy6),qAMY-8(t) (amy8),qALK-6-1(t) (alk6-1),qALK-6-2(t) (alk6-2),qPRO-1(t) (pro1),qPRO-2(t) (pro2),qPRO-6(t) (pro6),qPRO-11(t) (pro11),qGL-3(t) (gl3),qGL-6(t) (gl6),qLWR-1(t) (lwr1),qLWR-6(t) (lwr6)	qBR-1(t) (br1),qBR-7(t) (br7),qBR-8(t) (br8),qHR-1-2(t) (hr1),qHR-3(t) (hr3),qHR-6(t) (hr6),qHR-8(t) (hr8),qHR-11(t) (hr11),qRB-2(t) (rb2),qRB-4(t) (rb4),qRB-7(t) (rb7),qRB-10(t) (rb10),qMR-5(t) (mr5),qMR-7(t) (mr7),qAMY-3(t) (amy3),qAMY-6(t) (amy6),qAMY-8(t) (amy8),qALK-6-1(t) (alk6-1),qALK-6-2(t) (alk6-2),qPRO-1(t) (pro1),qPRO-2(t) (pro2),qPRO-6(t) (pro6),qPRO-11(t) (pro11),qGL-3(t) (gl3),qGL-6(t) (gl6),qLWR-1(t) (lwr1),qLWR-6(t) (lwr6)
20815	15103410	Xu, C.G., X.Q. Li, Y Xue, Y.W. Huang, J. Gao and Y.Z. Xing	Comparision of quantitative trait loci controlling seedling characteristics at two seedling stages using rice recombinant inbred lines.	Theor. Appl. Genet.	109 (3)	640-647	2004	qTDW-5-2 (qTDW5-2),qPH-1-6(t) (qPH1),qPH-2-1(t),qPH-4-5 (t) (qPH4),qPH-5-4(t) (qPH5),qPH-6-3(t) (qPH6),qPH-10-2(t) (qPH10),qPH-11-3(t) (qPH11),qMRL-3-1(t) (qMRL3),qMRL-5-2(t) (qMRL5),qMRL-7-1(t) (qMRL7),qMRL-10-1(t) (qMRL10),qMRL-11-1(t) (qMRL11),qMRL-11-2(t) (qwMRL11),qSPW,qSDW-2-1(t) (qSDW2),qSDW-3-2(t) (qSDW3),qSDW-5-3(t) (qSDW5),qSDW-10-1(t) (qSDW10),qSDW-11-1(t) (qSDW11),qRDW-2-1(t) (qRDW2),qRDW-3-1(t) (qRDW3),qRDW-5-3(t) (qRDW5),qRDW-5-4(t) (qRDW5),qRDW-10-2(t) (qRDW10),qRDW-11-1(t) (qRDW11),qTDW-3-2(t) (qTDW3),qTDW-10-1(t) (qTDW10),qTDW-11-1(t)  (qTDW11),qRSR-4-1(t) (qRSR4),qRSR-11-1(t) (qRSR11)	qTDW-5-2 (qTDW5-2),qPH-1-6(t) (qPH1),qPH-2-1(t),qPH-4-5 (t) (qPH4),qPH-5-4(t) (qPH5),qPH-6-3(t) (qPH6),qPH-10-2(t) (qPH10),qPH-11-3(t) (qPH11),qMRL-3-1(t) (qMRL3),qMRL-5-2(t) (qMRL5),qMRL-7-1(t) (qMRL7),qMRL-10-1(t) (qMRL10),qMRL-11-1(t) (qMRL11),qMRL-11-2(t) (qwMRL11),qSDW-1-2(t) (qSDW1),qSDW-2-1(t) (qSDW2),qSDW-3-2(t) (qSDW3),qSDW-5-3(t) (qSDW5),qSDW-10-1(t) (qSDW10),qSDW-11-1(t) (qSDW11),qRDW-2-1(t) (qRDW2),qRDW-3-1(t) (qRDW3),qRDW-5-3(t) (qRDW5),qRDW-5-4(t) (qRDW5),qRDW-10-2(t) (qRDW10),qRDW-11-1(t) (qRDW11),qTDW-3-2(t) (qTDW3),qTDW-10-1(t) (qTDW10),qTDW-11-1(t)  (qTDW11),qRSR-4-1(t) (qRSR4),qRSR-11-1(t) (qRSR11)
20816		Yasuhiro Suzuki., Nagamine, T. and Okuno, K.	Genetic analysis of a null-allele for lipoxygenase-3 in rice seeds.	Euphytica	91	99-101	1996		
20817		Yasuhiro Suzuki., Yasui, T., Ushio Matsukura. and Terao, J.	Oxidative stability of bran lipids from rice variety [Oryza sativa (L.)] lacking lipoxygenase-3 in seeds.	J. Agric. Food Chem.	44	3479-3483	1996		
20818	10552425	Yasuhiro Suzuki., Ise, K., Li, C., Honda, I., Iwai, Y., and Ushio Matsukura.	Volatile components in stored rice [Oryza sativa (L.)] of varieties with and without lipoxygenase-3 in seeds.	J. Agric. Food Chem.	47	1119-1124	1999		
20819		Yasuhiro Suzuki.	Screening and mode of inheritance of a rice variety lacking lipoxygenase-3.	Gamma Field Symposia	33	51-62	1994		
20820		Yasuhiro Suzuki. and Ushio Matsukura.	Lipoxygenase activity in maturing and germinating rice seeds with and without lipoxygenase-3 in mature seeds.	Plant Sci.	125	119-126	1997	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
20821		Ise, K., Suzuki, Y., Jianhua, X., Luyuan, D., Changrong, Y., Kudo, S., and Mekawa, M.	Germplasm lacking lipoxygenase-3 in a wide diversity of rice genetic resources in Yunnan, China. (In Japanese with English summary)	Japan. J. Trop. Agr.	46	33-38	2002		
20822	15221143	Miyamoto, N., Y. Goto, M. Matsui, Y. Ukai, M. Morita and K. Nemoto	Quantitative trait loci for phyllochron and tilleriing in rice.	Theor. Appl. Genet.	109 (4)	700-706	2004	qPHYLCHR-4-1(t) (phyllochron),qPHYLCHR-10-1(t) (phyllochron),qPHYLCHR-11-1(t) (phyllochron),qTN-2-1(t) (Tiller number),qTN-5-1(t) (tiller number),qTN-8-1(t) (tiller number),qT2DM-2-1(t),qT2DM-6-1(t),qT2pDM-2-1(t),qT22DM-2-1(t),qT22DM-5-1(t) qT22D qT22DM-5-1(t),qT3pDM-1-1(t),qT31DM-2-1(t),qT31DM-5-1(t),qT4pDM-1-1(t),qT4pDM-3-1(t)	qPHYLCHR-4-1(t) (phyllochron),qPHYLCHR-10-1(t) (phyllochron),qPHYLCHR-11-1(t) (phyllochron),qTN-2-1(t) (Tiller number),qTN-5-1(t) (tiller number),qTN-8-1(t) (tiller number),qT2DM-2-1(t),qT2DM-6-1(t),qT2pDM-2-1(t),qT22DM-2-1(t),qT22DM-5-1(t) qT22D qT22DM-5-1(t),qT3pDM-1-1(t),qT31DM-2-1(t),qT31DM-5-1(t),qT4pDM-1-1(t),qT4pDM-3-1(t)
20823	15375618	Shimizu, A., S. Yanagihara, S. Kawasaki and H. Ikehashi	Phosphorous deficiency-induced root elongation and its QTL in rice (Oryza sativa L.).	Theor. Appl. Genet.	109 (7)	1361-1368	2004	qPHO-6(t)	qPHO-6(t)
20824	15322754	Jain, A., R. Ariyadasa, A. Kumar, M.N. Srivastava, M. Hohan and S. Nair	Tagging and mapping of a rice gall midge resistance gene, GM8, and development of SCARs for use in marker-aided selection and gene pyramiding.	Theor. Appl. Genet.	109 (7)	1377-1384	2004	GM8,GM4	Gm8(t), Gm8,Gm4(t)*, Gm4(t), Gm4, Gm4t
20825	15480535	Yoshida, K., N.T. Miyashita and T. Ishii	Nucleotide polymorphism in the Adh1 locus region of the wild rice Oryza rufipogon.	Theor. Appl. Genet.	109 (7)	1406-1416	2004	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
20826	15278284	Biradar, S.K., R.M. Sundaram, T. Thirumurugan, J.S. Bentur, S. Amudhan, V.V. Shenoy, B. Mishra, J. Bennett, and N.P. Sarma	Identification of flanking SSR markers for a major rice gall midge resistance gene Gm1 and their validation.	Theor. Appl. Genet.	109 (7)	1468-1473	2004	GM1	Gm1, Gm-1, GM-1
20827	15365628	Yamagishi, J., N. Miyamoto,  S. Hirotsu, R.C. Laza and K. Nemoto	QTLs for branching, floret formation, and pre-flowering floret abortion of rice panicle in a temperate japonica x tropical japonica cross.	Theor. Appl. Genet.	109 (8)	1555-1561	2004	qNFP-2-1(t),qNPBP-2-1(t),qNPBP-4-1(t),qNFPB-9-1(t),qNFPB-11-1(t),qFPFFA-1-1(t),qFPFFA-10-1(t),qFPFFA-11-1(t)	qNFP-2-1(t),qNPBP-2-1(t),qNPBP-4-1(t),qNFPB-9-1(t),qNFPB-11-1(t),qFPFFA-1-1(t),qFPFFA-10-1(t),qFPFFA-11-1(t)
20828	15549232	Obara, M., T. Sato, S. Sasaki, K. Kashiba, A. Nagano, I. Nakamura, T. Ebitani, M. Yano, T. Yamaya	Iderntification and characterization of a QTL on chromosome 2 for cytosolic glutamine synthetase content and panicle number in rice.	Theor. Appl. Genet.	110 (1)	1-11	2004	qPNN-2-1(t) (Pnn1)	qPNN-2-1(t) (Pnn1)
20829	15551043	Wan, X.Y., J.M. Wan, C.C. Su, C.M. Wang, W.B. Shen, J.M. Li, H.L. Wang, L. Jiang, S.J. Liu, L.M. Chen, H. Yasui, and A. Yoshimura	QTL detection for eating quality of cooked rice in a population of chromosome segment substitution lines.	Theor. Appl. Genet.	110 (1)	71-79	2004	qVC-4-1(t) (qVC-4),qVC-6-1(t) (qVC-6),qEL-3-1(t) (qEL-3),qEL-8-1(t) (qEL-8),qIVOE-8-1(t) (qIVOE-8),qAC-8-1(t) (qAC-8),qAC-9-1(t) (qAC-9a),qAC-9-2(t) (qAC-9b),qAC-12-1(t) (qAC-12),qGT-3-1(t) (qGT-3),qGT-1-1(t) (qGT-1),qGT-6-1(t) (qGT-6),qGC-4-1(t) (qGC-4),qGC-6-4(t) (qGC-6),qGC-11-1(t) (qGC-11),qGC-3-1(t) (qGC-3),qGC-5-1(t) (qGC-5),qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qLT-8-1(t) (qLT-8),qLT-4-1(t) (qLT-4),qST-8-1(t) (qST-8),qST-4-1(t) (qST-4),qTD-6-1(t) (qTD-6),qTD-8-1(t) (qTD-8),qLT-6-1(t) (qLT-6)	qVC-4-1(t) (qVC-4),qVC-6-1(t) (qVC-6),qEL-3-1(t) (qEL-3),qEL-8-1(t) (qEL-8),qIVOE-8-1(t) (qIVOE-8),qAC-8-1(t) (qAC-8),qAC-9-1(t) (qAC-9a),qAC-9-2(t) (qAC-9b),qAC-12-1(t) (qAC-12),qGT-3-1(t) (qGT-3),qGT-1-1(t) (qGT-1),qGT-6-1(t) (qGT-6),qGC-4-1(t) (qGC-4),qGC-6-4(t) (qGC-6),qGC-11-1(t) (qGC-11),qGC-3-1(t) (qGC-3),qGC-5-1(t) (qGC-5),qIVOE-6-1(t)  (qIVOE-6a, qIVOE-6),qLT-8-1(t) (qLT-8),qLT-4-1(t) (qLT-4),qST-8-1(t) (qST-8),qST-4-1(t) (qST-4),qTD-6-1(t) (qTD-6),qTD-8-1(t) (qTD-8),qLT-6-1(t) (qLT-6)
20830	15549231	Yang, H., A. You, Z. Yang, F. zhang, R. He, L. Zhu, G. He	High-resolution genetic mapping at the Bph15 locus for brown planthopper resistance in rice (Oryza sativa L.).	Theor. Appl. Genet.	110 (1)	182-191	2004	BPH15,BPH14	Bph15 (Qbp2), Bph15, Qbp2, qBPH-4,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
20832	15672255	Song, X., S.Q. Qinm C.G. Xu, X.H. Li, and Q. Zhang	Genetic dissection of embryo sac fertility, pollen fertility, and their cotributions to spikelet fertility of intersubspecific hybrids in rice.	Theor. Appl. Genet.	110 (2)	205-211	2005	qPF-5-1(t) (pf5),qPF-12-1(t) (pf12),qEF-6-1(t) (Ef6, S5),qSPF-5-1(t) (spf5),qSPF-6-1(t) (spf6),qSPF-8-1(t) (spf8)	qPF-5-1(t) (pf5),qPF-12-1(t) (pf12),qEF-6-1(t) (Ef6, S5),qSPF-5-1(t) (spf5),qSPF-6-1(t) (spf6),qSPF-8-1(t) (spf8)
20833	15549230	Kubo, T. and A. Yoshimura	Epistasis underlying female sterility detected in hybrid breakdown in a Japonica-Indica cross of rice (Oryza sativa L.).	Theor. Appl. Genet.	110 (2)	346-355	2005	HSA1B,HSA2,HSA1A,HSA3	hsa1(t), s(t), hst49,hsa2(t)*, hsa2(t), hst50,hsa1(t), s(t), hst49,hsa3(t)
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21076		Zhang, T.B. and Zhu, H.	Duration of different stages of meiosis in pollen mother cells of rice.	RGN	4	67	1987		
21078	15659430	Nori Kurata, Kazumaru Miyoshi, Ken-Ichi Nonomura, Yukiko Yamazaki and Yukihiro Ito	Rice Mutants and Genes Related to Organ Development , Morphogenesis and Physiological Traits	Plant Cell Physiol.	46(1)	48-62	2005	S6,S11,S10,S12,S13,S14,S15,S17,S16,S18,S19,S2,S20,S21,S22,S26,S23,S25,S27,S28,S4,S8,S3,S9,S24,S7,S5,S1	,S11(t),,S12(t),,S14(t),S15(S10), S10,S17(t)*,,S18*, Hst39,,,S20*, Hst43,S21*, Hst44,S22(t),S26(t), S26(t)*,S23(t),S25(t), S25(t)*,S27(t), S27(t)*,S28(t),,,,,S24(t), S24(t)*, Sb, F5-Du,S7,S5-3, S5-4,
21079	12791992	The Rice Chromosome 10 Sequencing Consortium	In-depth view of structure, activity, and evolution of rice chromosome 10	Science	300(5625)	1566-1569	2003		
21081		Abe,F., Kitashiba,H., Kishitani,S. and Toriyama,K.	Isolation of a cDNA clone encoding the alternative oxidase expressed in rice anthers	Sex. Plant Reprod.	10	374-375	1997	AOX1A	Ao1-1, AOX1a, OsAOX1a, AOX 1a
21082	3500172	Abe,K., Emori,Y., Kondo,H., Suzuki,K. and Arai,S.	Molecular cloning of a cysteine proteinase inhibitor of rice (oryzacystatin). Homology with animal cystatins and transient expression in the ripening process of rice seeds.	J. Biol. Chem.	262(35)	16793-16797	1987	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
21083		Abe,K., Emori,Y., Kawasaki,H., Kondo,H., Suzuki,K. and Arai,S.	Organization and primary sequence of multiple genes encoding type II mRNA species of rice prepro-glutelin	Agric. Biol. Chem.	53(11)	2969-2973	1989	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21084	7678765	Adachi,T., Izumi,H., Yamada,T., Tanaka,K., Takeuchi,S., Nakamura,R. and Matsuda,T.	Gene structure and expression of rice seed allergenic proteins belonging to the alpha-amylase/trypsin inhibitor family.	Plant Mol. Biol.	21(2)	239-248	1993	_,_	RA17, RAP, RAG1, OsEnS-97,RAG2, RA14B, RA14, OsEnS-98
21086	11454775	Adams,K.L., Rosenblueth,M., Qiu,Y.L. and Palmer,J.D.	Multiple losses and transfers to the nucleus of two mitochondrial succinate dehydrogenase genes during angiosperm evolution.	Genetics	158(3)	1289-1300	2001		
21087	10903912	Agrawal,G.K., Jwa,N.S. and Rakwal,R.	A novel rice (Oryza sativa L.) acidic PR1 gene highly responsive to cut, phytohormones, and protein phosphatase inhibitors.	Biochem. Biophys. Res. Commun.	274(1)	157-165	2000	PR1A	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 
21088	11244106	Agrawal,G.K., Yamazaki,M., Kobayashi,M., Hirochika,R., Miyao,A. and Hirochika,H.	Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene.	Plant Physiol.	125(3)	1248-1257	2001	ABA1,TATC	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsTATC, OsTatC, TatC
21089	12074577	Agrawal,G.K., Rakwal,R. and Iwahashi,H.	Isolation of novel rice (Oryza sativa L.) multiple stress responsive MAP kinase gene, OsMSRMK2, whose mRNA accumulates rapidly in response to environmental cues.	Biochem. Biophys. Res. Commun.	294(5)	1009-1016	2002	MSRMK2	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
21090		Agrawal,G.K., Rakwal,R., Jwa,N.-S., Han,K.-S. and Agrawal,V.P.	Molecular cloning and mRNA expression analysis of the first rice jasmonate biosynthetic pathway gene allene oxide synthase	Plant Physiol. Biochem.	40(9)	771-782	2002	AOS1	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2
21091	12207666	Agrawal,G.K., Rakwal,R., Jwa,N.S. and Agrawal,V.P.	Characterization of a novel rice gene OsATX and modulation of its expression by components of the stress signalling pathways.	Physiol. Plantarum	116(1)	87-95	2002	_	OsATX, ATX
21092	12507518	Agrawal,G.K., Agrawal,S.K., Shibato,J., Iwahashi,H. and Rakwal,R.	Novel rice MAP kinases OsMSRMK3 and OsWJUMK1 involved in encountering diverse environmental stresses and developmental regulation.	Biochem. Biophys. Res. Commun.	300(3)	775-783	2003	_,MAPK4	OsMPK20-4, OsWJUMK, WJUMK, OsWJUMK1, WJUMK1, MAPK8, OsMPK8, MPK8,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
21093		Agrawal,G.K., Jwa,N.-S., Han,K.-S., Agrawal,V.P. and Rakwal,R.	Isolation of a novel rice PR4 type gene whose mRNA expression is modulated by blast pathogen attack and signaling components	Plant Physiol. Biochem.	41(1)	81-90	2003	PR4	OsPR4, OsPR4a, PR4a, OsPR-4
21094	14559225	Agrawal,G.K., Jwa,N.S., Shibato,J., Han,O., Iwahashi,H. and Rakwal,R.	Diverse environmental cues transiently regulate OsOPR1 of the &quot;octadecanoid pathway&quot; revealing its importance in rice defense/stress and development.	Biochem. Biophys. Res. Commun.	310(4)	1073-1082	2003	OPR1,OPR10,OG1,OPR4,AOS1,AOC,OPR8,OPR6,OPR5	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsOPR10, OsOPR12, OsOPR01-1,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsOPR4, OsOPR10, OsOPR06-3,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsAOC, AOC1, OsAOC1, HB, CPM2,OsOPR8, OsOPR7, OsOPR02-1,OsOPR6, OsOPR4, OsOPR06-1,OsOPR5, OsOPR6, OsOPR06-2
21095		Aguan,K., Sugawara,K., Suzuki,N. and Kusano,T.	Isolation of genes for low-temperature-induced proteins in rice by a simple subtractive method	Plant Cell Physiol.	32(8)	1285-1289	1991	LIP19,_,_	Lip19, lip19, OsbZIP38,LIP5, lip5, ,LIP9, lip9, 
21096	8341255	Aguan,K., Sugawara,K., Suzuki,N. and Kusano,T.	Low-temperature-dependent expression of a rice gene encoding a protein with a leucine-zipper motif.	Mol. Gen. Genet.	240(1)	1-8	1993	LIP19	Lip19, lip19, OsbZIP38
21097	7610181	Akagi,H., Baba,T., Shimada,H. and Fujimura,T.	Nucleotide sequence of a stearoyl-acyl carrier protein desaturase cDNA from developing seeds of rice.	Plant Physiol.	108(2)	845-846	1995	_	
21098	14968308	Akagi,H., Nakamura,A., Yokozeki-Misono,Y., Inagaki,A., Takahashi,H., Mori,K. and Fujimura,T.	Positional cloning of the rice Rf-1 gene, a restorer of BT-type cytoplasmic male sterility that encodes a mitochondria-targeting PPR protein.	Theor. Appl. Genet.	108(8)	1449-1457	2004	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
21100	11779628	Akama,K., Akihiro,T., Kitagawa,M. and Takaiwa,F.	Rice (Oryza sativa) contains a novel isoform of glutamate decarboxylase that lacks an authentic calmodulin-binding domain at the C-terminus.	Biochim. Biophys. Acta	1522(3)	143-150	2001	GAD2,GAD1	OsGAD2,OsGAD1, GDC
21101	9112785	Akashi,K. and Small,I.D.	A cDNA clone encoding rice histidyl-tRNA synthetase (accession no. Z85984) (PGR97-062)	Plant Physiol.	113(4)	1464	1997	_	
21103		Akiyama,T. and Pillai,M.A.	Isolation and characterization of a gene for a repetitive proline rich protein (OsPRP) down-regulated during submergence in rice (Oryza sativa)	Physiol. Plantarum	118(4)	507-513	2003	_	OsPRP, OsPRP1, PRP1, OsRePRP1.1, RePRP1.1
21104	8973371	Aliyeva,E., Metz,A.M. and Browning,K.S.	Sequences of two expressed sequence tags (EST) from rice encoding different cap-binding proteins.	Gene	180(1-2)	221-223	1996	_,_	p26,p28
21105	7669811	Alvarez,A.M., Adachi,T., Nakase,M., Aoki,N., Nakamura,R. and Matsuda,T.	Classification of rice allergenic protein cDNAs belonging to the alpha-amylase/trypsin inhibitor gene family.	Biochim. Biophys. Acta	1251(2)	201-204	1995	_,_,_	RAG2, RA14B, RA14, OsEnS-98,RA5B, OsEnS-99,RA16, OsEnS-100
21106	2545704	Anderson,J.M., Hnilo,J., Larson,R., Okita,T.W., Morell,M. and Preiss,J.	The encoded primary sequence of a rice seed ADP-glucose pyrophosphorylase subunit and its homology to the bacterial enzyme.	J. Biol. Chem.	264(21)	12238-12242	1989	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
21107	1847888	Anderson,J.M., Larsen,R., Laudencia,D., Kim,W.T., Morrow,D., Okita,T.W. and Preiss,J.	Molecular characterization of the gene encoding a rice endosperm-specific ADPglucose pyrophosphorylase subunit and its developmental pattern of transcription.	Gene	97(2)	199-205	1991	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
21108		Ansari,M.I., Lee,R.H. and Chen,S.C.G.	A novel senescence-associated gene encoding -aminobutyric acid (GABA):pyruvate transaminase is upregulated during rice leaf senescence	Physiol. Plantarum	123(1)	1-8	2005	_,_	OsGABA-T, GABA-T,Osl2
21109	8286405	Aoki,H. and Ida,S.	Nucleotide sequence of a rice root ferredoxin-NADP+ reductase cDNA and its induction by nitrate.	Biochim. Biophys. Acta	1183(3)	553-556	1994	_	FNR, PetH
21110	8016278	Aoki,H., Doyama,N. and Ida,S.	Sequence of a cDNA encoding rice (Oryza sativa L.) leaf ferredoxin-NADP+ reductase.	Plant Physiol.	104(4)	1473-1474	1994	_	OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1
21111	7748889	Aoki,H., Tanaka,K. and Ida,S.	The genomic organization of the gene encoding a nitrate-inducible ferredoxin-NADP+ oxidoreductase from rice roots.	Biochim. Biophys. Acta	1229(3)	389-392	1995	_	FNR, PetH
21113	12668768	Aoki,N., Hirose,T., Scofield,G.N., Whitfeld,P.R. and Furbank,R.T.	The sucrose transporter gene family in rice.	Plant Cell Physiol.	44(3)	223-232	2003	SUT1,SUT2,SUT3,SUT5,SUT4	OsSUT1, OsSUT2,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT4(t), OsSUT4
21114	10359080	Arimura,S., Takusagawa,S., Hatano,S., Nakazono,M., Hirai,A. and Tsutsumi,N.	A novel plant nuclear gene encoding chloroplast ribosomal protein S9 has a transit peptide related to that of rice chloroplast ribosomal protein L12.	FEBS Lett.	450(3)	231-234	1999	RPL12-2,WGL2	rpl12-2, CL12, OsRPL12-2,rps9, OsRPS9, OsWGL2
21115	9445479	Arioli,T., Peng,L., Betzner,A.S., Burn,J., Wittke,W., Herth,W., Camilleri,C., Hofte,H., Plazinski,J., Birch,R., Cork,A., Glover,J., Redmond,J. and Williamson,R.E.	Molecular analysis of cellulose biosynthesis in Arabidopsis.	Science	279(5351)	717-720	1998	CESA1	OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1
21116	9390447	Arrendondo-Peter,R., Hargrove,M.S., Sarath,G., Moran,J.F., Lohrman,J., Olson,J.S. and Klucas,R.V.	Rice hemoglobins. Gene cloning, analysis, and O2-binding kinetics of a recombinant protein synthesized in Escherichia coli.	Plant Physiol.	115(3)	1259-1266	1997	Hb2,Hb1	HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
21117	8520124	Asakura,T., Abe,K. and Arai,S.	Evidence for the occurrence of multiple aspartic proteinases in rice seeds.	Biosci. Biotechnol. Biochem.	59(9)	1793-1794	1995	_	Oryzasin
21118	7556174	Asakura,T., Watanabe,H., Abe,K. and Arai,S.	Rice aspartic proteinase, oryzasin, expressed during seed ripening and germination, has a gene organization distinct from those of animal and microbial aspartic proteinases.	Eur. J. Biochem.	232(1)	77-83	1995	_	Oryzasin
21119	12091721	Asano,T., Kusano,H., Okuda,T., Kubo,N., Shimada,H. and Kadowaki,K.	Rpp16 and Rpp17, from a common origin, have different protein characteristics but both genes are predominantly expressed in rice phloem tissues.	Plant Cell Physiol.	43(6)	668-674	2002	RPP16,RPP17	Rpp16(t), ERG3, OsERG3,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b
21120	10468600	Ashikari,M., Wu,J., Yano,M., Sasaki,T. and Yoshimura,A.	Rice gibberellin-insensitive dwarf mutant gene Dwarf 1 encodes the alpha-subunit of GTP-binding protein.	Proc. Natl. Acad. Sci. U.S.A.	96(18)	10284-10289	1999	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
21121	15976269	Ashikari,M., Sakakibara,H., Lin,S., Yamamoto,T., Takashi,T., Nishimura,A., Angeles,E.R., Qian,Q., Kitano,H. and Matsuoka,M.	Cytokinin oxidase regulates rice grain production.	Science	309(5735)	741-745	2005	CKX10,CKX1,CKX7,CKX9,CKX5,CKX6,CKX8,CKX4,CKX3,CKX11,GN1B,GN2,GN3,GN4,GN5,PH4,PH3,PH2,PH1,GN1A	OsCKX10,OsCKX1,OsCKX7,OsCKX9,OsCKX5, ckx5,OsCKX6,OsCKX8,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsCKX3, ckx3,OsCKX11,Gn1b,Gn2,Gn3,Gn4,Gn5,Ph4,Ph3,Ph2,Ph1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
21122	11487698	Aubert,D., Chen,L., Moon,Y.H., Martin,D., Castle,L.A., Yang,C.H. and Sung,Z.R.	EMF1, a novel protein involved in the control of shoot architecture and flowering in Arabidopsis.	Plant Cell	13(8)	1865-1875	2001	EMF1	OsEMF1
21123	9358062	Aubourg,S., Takvorian,A., Cheron,A., Kreis,M. and Lecharny,A.	Structure, organization and putative function of the genes identified within a 23.9-kb fragment from Arabidopsis thaliana chromosome IV.	Gene	199(1-2)	241-253	1997	EIF4A1	eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21124	1731971	B.S. and Schilperoort,R.A.	Structure and expression of a root-specific rice gene.	Plant Mol. Biol.	18(1)	161-164	1992	_	GOS9 
21125	1302635	B.S., F., Rueb,S., Katagiri,F., Chua,N.H., Schilperoort,R.A. and Hensgens,L.A.	The promoter of the rice gene GOS2 is active in various different monocot tissues and binds rice nuclear factor ASF-1.	Plant J.	2(6)	837-844	1992	_	GOS2, OseIF1, OsGOS2, SUI1, PtfS 
21126	7518089	Baba,T., Nishihara,M., Mizuno,K., Kawasaki,T., Shimada,H., Kobayashi,E., Ohnishi,S., Tanaka,K. and Arai,Y.	Identification, cDNA cloning, and gene expression of soluble starch synthase in rice (Oryza sativa L.) immature seeds.	Plant Physiol.	103(2)	565-573	1993	SSI	OsSSI, SSS 1, SSS1, SS1
21127	12466291	Bai,J., Pennill,L.A., Ning,J., Lee,S.W., Ramalingam,J., Webb,C.A., Zhao,B., Sun,Q., Nelson,J.C., Leach,J.E. and Hulbert,S.H.	Diversity in Nucleotide Binding Site-Leucine-Rich Repeat Genes in Cereals.	Genome Res.	12(12)	1871-1884	2002	_,_,_,_,_,_,_,_,_,_	rNBS8,rNBS10,rNBS17,rNBS36,rNBS41,rNBS56,rNBS78,rNBS44,OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33,YR16, YR29, rNBS42
21128	12376644	Banuelos,M.A., Garciadeblas,B., Cubero,B. and Rodriguez-Navarro,A.	Inventory and functional characterization of the HAK potassium transporters of rice.	Plant Physiol.	130(2)	784-795	2002	HAK17,HAK11,HAK2,HAK4,HAK12,HAK14,HAK5,HAK16,LCS,HAK10,HAK9,HAK6,HAK8,HAK3,HAK13,HAK15,HAK7	OsHAK17, FCO3, FCO4,OsHAK11,OsHAK2,OsHAK4,OsHAK12,OsHAK14,OsHAK5, FCO13, OsFCO13,OsHAK16,OsHAK1, HAK1,OsHAK10,OsHAK9,OsHAK6, OsSTA42,OsHAK8,OsHAK3,OsHAK13,OsHAK15,OsHAK7
21129	2103437	Barbier,P. and Ishihama,A.	Variation in the nucleotide sequence of a prolamin gene family in wild rice.	Plant Mol. Biol.	15(1)	191-195	1990	_	Prol-01, CysR10, crP10, pro10.1
21130	3368456	Baroin,A., Perasso,R., Qu,L.H., Brugerolle,G., Bachellerie,J.P. and Adoutte,A.	Partial phylogeny of the unicellular eukaryotes based on rapid sequencing of a portion of 28S ribosomal RNA.	Proc. Natl. Acad. Sci. U.S.A.	85(10)	3474-3478	1988	_	
21131	15282953	Basak,S., Sachdev,A. and Johari,R.P.	A partial sequence of lipoxygenase gene from genomic DNA of aromatic rice (Oryza sativa L.).	Indian J. Exp. Biol.	42(2)	190-196	2004	LOX-L2	OsLOX-L2, LOX1.1, LOX L-2, LOX-2
21132	11094977	Basu,D., Dehesh,K., Schneider-Poetsch,H.J., Harrington,S.E., McCouch,S.R. and Quail,P.H.	Rice PHYC gene: structure, expression, map position and evolution.	Plant Mol. Biol.	44(1)	27-42	2000	PHYB,PHYA,PHYC	phyB, PHYB1, OsPHYB, OsphyB,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsPHYC, OsPHYCa, OsPHYCb
21133	8616217	Belouchi,A., Cellier,M., Kwan,T., Saini,H.S., Leroux,G. and Gros,P.	The macrophage-specific membrane protein Nramp controlling natural resistance to infections in mice has homologues expressed in the root system of plants.	Plant Mol. Biol.	29(6)	1181-1196	1995	NRAMP1	OsNramp1, OsNRAMP1, OsNramp6
21134	9154989	Belouchi,A., Kwan,T. and Gros,P.	Cloning and characterization of the OsNramp family from Oryza sativa, a new family of membrane proteins possibly implicated in the transport of metal ions.	Plant Mol. Biol.	33(6)	1085-1092	1997	NRAMP1,NRAMP2,NRAMP3	OsNramp1, OsNRAMP1, OsNramp6,OsNramp2, OsNRAMP2,OsNramp3, OsNRAMP3
21135	15659452	Bi,X., Khush,G.S. and Bennett,J.	The Rice Nucellin Gene Ortholog OsAsp1 Encodes an Active Aspartic Protease Without a Plant-specific Insert and is Strongly Expressed in Early Embryo.	Plant Cell Physiol.	46(1)	87-98	2005	_,_,_	OsAsp2,OsAsp3,OsAsp1
21136	16668981	Binh,L. and Oono,K.	Molecular cloning and characterization of genes related to chilling tolerance in rice	Plant Physiol.	99(3)	1146-1150	1992	_,DER1,GSTU50,_	,OsDER1,OsGSTU50,OsARFA1a, ARFA1a
21138	12677405	Blair,M.W., Garris,A.J., Iyer,A.S., Chapman,B., Kresovich,S. and McCouch,S.R.	High resolution genetic mapping and candidate gene identification at the xa5 locus for bacterial blight resistance in rice ( Oryza sativa L.).	Theor. Appl. Genet.	107(1)	62-73	2003	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
21139	9746350	Bouvier-Nave,P., Husselstein,T. and Benveniste,P.	Two families of sterol methyltransferases are involved in the first and the second methylation steps of plant sterol biosynthesis.	Eur. J. Biochem.	256(1)	88-96	1998	_,SMT1-1	Ossmt2-1,Ossmt1-1, OsSMT1-1
21140	8132486	Brandolin,G., A., Trezeguet,V., Lauquin,G.J. and Vignais,P.V.	Chemical, immunological, enzymatic, and genetic approaches to studying the arrangement of the peptide chain of the ADP/ATP carrier in the mitochondrial membrane.	J. Bioenerg. Biomembr.	25(5)	459-472	1993	ANT	ant, ricANC1, ANC1
21141	12746512	Breton,G., Danyluk,J., J.B. and Sarhan,F.	Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis.	Plant Physiol.	132(1)	64-74	2003	_,_	Oscor413-pm1,COR413-TM1, Oscor413-tm1
21142	7610170	Breviario,D., Giani,S. and Meoni,C.	Three rice cDNA clones encoding different beta-tubulin isotypes.	Plant Physiol.	108(2)	823-824	1995	TUB1,TUB5,TUB4	OsTUB1, TUBB1, OSTB-34,OsTUB5, TUBB5, OSTB-50, R2242,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
21143	7766885	Breviario,D., Morello,L. and Giani,S.	Molecular cloning of two novel rice cDNA sequences encoding putative calcium-dependent protein kinases.	Plant Mol. Biol.	27(5)	953-967	1995	CDPK2,CDPK11	OsCDPK2, OsCPK2,OsCDPK11, OsCPK11
21144	11090207	Bryan,G.T., Wu,K.S., Farrall,L., Jia,Y., Hershey,H.P., McAdams,S.A., Faulk,K.N., Donaldson,G.K., Tarchini,R. and Valent,B.	tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta.	Plant Cell	12(11)	2033-2045	2000	PITA,PIKM,PIK,PI6	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi6(t)*, Pi6, Pi-6(t), pi6(t)
21145	8075400	Buchholz,W.G., Harris-Haller,L., DeRose,R.T. and Hall,T.C.	Cyclophilins are encoded by a small gene family in rice.	Plant Mol. Biol.	25(5)	837-843	1994	CYP19-3,LRT2	OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
21146	1536936	Caelles,C., Delseny,M. and Puigdomenech,P.	The hydroxyproline-rich glycoprotein gene from Oryza sativa.	Plant Mol. Biol.	18(3)	617-619	1992	_	HRGP
21147	12897790	Cahoon,E.B., Hall,S.E., Ripp,K.G., Ganzke,T.S., Hitz,W.D. and Coughlan,S.J.	Metabolic redesign of vitamin E biosynthesis in plants for tocotrienol production and increased antioxidant content.	Nat. Biotechnol.	21(9)	1082-1087	2003	_,_	HPT,OsHGGT, HGGT, OsHST
21148	9390449	Campos,N., Lois,L.M. and Boronat,A.	Nucleotide sequence of a rice cDNA encoding a transketolase-like protein homologous to the Arabidopsis CLA1 gene product (Accession No. AF024512)(PGR97-169)	Plant Physiol.	115(3)	1289	1997	DXS1	CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1
21149		Cao,W.H., Dong,Y., Zhang,J.S. and Chen,S.Y.	Characterization of an ethylene receptor homolog gene from rice	Sci. China, C, Life Sciences	46	370-378	2003	ETR3	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2
21150	8604305	Cermakian,N., Ikeda,T.M., Cedergren,R. and Gray,M.W.	Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage.	Nucleic Acids Res.	24(4)	648-654	1996	RPOTP	OsRpo Tp, OsRpoTp, NEP, RpoTp
21151	10080713	Chang,M., Wang,B., Chen,X. and Wu,R.	Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-c expression in rice.	Plant Mol. Biol.	39(1)	105-115	1999	PP2A,PP1	OsPP2Ac,OsPP1c
21153	12956528	Chen,J., Tang,W.H., Hong,M.M. and Wang,Z.Y.	OsBP-73, a rice gene, encodes a novel DNA-binding protein with a SAP-like domain and its genetic interference by double-stranded RNA inhibits rice growth.	Plant Mol. Biol.	52(3)	579-590	2003	BP73	BP-73, OsBP-73, Riaa1, Os-BP-73
21154	9002598	Chen,M. and Bennetzen,J.L.	Sequence composition and organization in the Sh2/A1-homologous region of rice.	Plant Mol. Biol.	32(6)	999-1001	1996	_,AGPL2	a1,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
21155	9096411	Chen,M., SanMiguel,P., A.C., Woo,S.S., Zhang,H., Wing,R.A. and Bennetzen,J.L.	Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes.	Proc. Natl. Acad. Sci. U.S.A.	94(7)	3431-3435	1997	_,AGPL2	a1,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
21156	1422207	Chen,M.S., Johnson,B., Wen,L., Muthukrishnan,S., Kramer,K.J., Morgan,T.D. and Reeck,G.R.	Rice cystatin: bacterial expression, purification, cysteine proteinase inhibitory activity, and insect growth suppressing activity of a truncated form of the protein.	Protein Expr. Purif.	3(1)	41-49	1992		
21157	8756508	Chen,P.-W. and Chen,L.-J.	A Rice Embryo-Specific cDNA (Accession No. U57641) Encoding A Late Embryogenesis Abundant Group 3 Protein (PGR96-049)	Plant Physiol.	111(4)	1353	1996		
21158	8742342	Chen,P.-W., Chai,Y.-J., Wang,L.-D., Tzen,J.T.C., Tseng,M.-J. and Chen,L.-J.	Two Embryo-Specific cDNAs (Accession No. U43930 and U43931) Encoding Two Oleosin Isoforms on the Surface of Oil Bodies from Rice (PGR95-143)	Plant Physiol.	110(2)	714	1996	_,_	ole16, OsEnS-72,ole18
21159	9046601	Chen,P.-W., Chow,S.-H. and Chen,L.-J.	Nucleotide Sequence of a cDNA (Accession No. U76004) Encoding Rice Bowman-Birk Proteinase Inhibitor (PGR97-015)	Plant Physiol.	113(2)	663	1997	RBBI3-3	RBBI3-3, OsBBPI, BBPI
21161	12223786	Chen,P.W. and Chen,L.J.	Isolation of a cDNA clone (Accession No. U57638) encoding a type-2 metallothionein-like protein from rice embryo (PGR97-109)	Plant Physiol.	114(4)	1568	1997	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
21162	10520450	Chen,W.M., Hsieh,H.M. and Huang,P.C.	Type 2 rice metallothionein-like gene has two introns.	DNA Seq.	8(4)	223-228	1998	MT2A	OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1
21163	8541504	Chen,X., Wang,B. and Wu,R.	A gibberellin-stimulated ubiquitin-conjugating enzyme gene is involved in alpha-amylase gene expression in rice aleurone.	Plant Mol. Biol.	29(4)	787-795	1995	_,AMY1B	UBC, OsUBC,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21164	9107028	Chen,X., Chang,M., Wang,B. and Wu,B.	Cloning of a Ca(2+)-ATPase gene and the role of cytosolic Ca2+ in the gibberellin-dependent signaling pathway in aleurone cells.	Plant J.	11(3)	363-371	1997	_,AMY1B	OsCa-atpase,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21165	15663008	Chen,X., Yu,T., Xiong,J., Zhang,Y., Hua,Y., Li,Y. and Zhu,Y.	Molecular cloning and expression analysis of rice phosphoribulokinase gene that is regulated by environmental stresses.	Mol. Biol. Rep.	31(4)	249-255	2004	_	OsPrk
21167	12624189	Chen,Z., Young,T.E., Ling,J., Chang,S.C. and Gallie,D.R.	Increasing vitamin C content of plants through enhanced ascorbate recycling.	Proc. Natl. Acad. Sci. U.S.A.	100(6)	3525-3530	2003	DHAR1	OsDHAR1, DHAR, cytDHAR, OsDHAR
21168	12913152	Cheong,Y.H., Moon,B.C., Kim,J.K., Kim,C.Y., Kim,M.C., Kim,I.H., Park,C.Y., Kim,J.C., Park,B.O., Koo,S.C., Yoon,H.W., Chung,W.S., Lim,C.O., Lee,S.Y. and Cho,M.J.	BWMK1, a Rice Mitogen-Activated Protein Kinase, Locates in the Nucleus and Mediates Pathogenesis-Related Gene Expression by Activation of a Transcription Factor.	Plant Physiol.	132(4)	1961-1972	2003	BWMK1,EREBP1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84
21169	16115061	Chern,M., Canlas,P.E., Fitzgerald,H.A. and Ronald,P.C.	Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1.	Plant J.	43(5)	623-635	2005	NH1,_,XA21	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,NRR, NRR1,Xa21*, Xa21, OsXA21
21170	15986920	Chern,M., Fitzgerald,H.A., Canlas,P.E., Navarre,D.A. and Ronald,P.C.	Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light.	Mol. Plant Microbe Interact.	18(6)	511-520	2005	NH1,NH2,_	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsNH2, OsNPR2, OsNPR2/NH2 ,NRR, NRR1
21171	15388961	Chi,W., Yang,J., Wu,N. and Zhang,F.	Four rice genes encoding NADP malic enzyme exhibit distinct expression profiles.	Biosci. Biotechnol. Biochem.	68(9)	1865-1874	2004	NADP-ME2,_,_,NADP-ME1	OscytME1,OscytME2, cytME2,OscytME3, OsEnS-13,NADP-ME, ME6, OschlME, XcrMal1
21172	9225861	Chittenden,K., Gowda,K., Black,S.D. and Zwieb,C.	Interaction of rice and human SRP19 polypeptides with signal recognition particle RNA.	Plant Mol. Biol.	34(3)	507-515	1997	_	SRP19
21173	9304860	Chittoor,J.M., Leach,J.E. and White,F.F.	Differential induction of a peroxidase gene family during infection of rice by Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	10(7)	861-871	1997	POX22.3,POX5.1,POX8.1,POXGX9,POX3006	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,POX5.1, prx113, POX5,POX8.1, prx110, POX8,POXgX9, OsPOXgX9, prx112,POX3006, prx114, PO-C1, POC-1, POC1
21174	14675427	Cho,E., Okada,A., Kenmoku,H., Otomo,K., Toyomasu,T., Mitsuhashi,W., Sassa,T., Yajima,A., Yabuta,G., Mori,K., Oikawa,H., Toshima,H., Shibuya,N., Nojiri,H., Omori,T., Nishiyama,M. and Yamane,H.	Molecular cloning and characterization of a cDNA encoding ent-cassa-12,15-diene synthase, a putative diterpenoid phytoalexin biosynthetic enzyme, from suspension-cultured rice cells treated with a chitin elicitor.	Plant J.	37(1)	1-8	2004	KS8,KS7	OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6
21175	9338967	Cho,H.T. and Kende,H.	Expression of expansin genes is correlated with growth in deepwater rice.	Plant Cell	9(9)	1661-1671	1997	EXPA4,EXPA2,EXPA1,EXPA3	OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3
21176	12177491	Choi,D.W., Rodriguez,E.M. and Close,T.J.	Barley Cbf3 gene identification, expression pattern, and map location.	Plant Physiol.	129(4)	1781-1787	2002	DREB1D	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1
21177	2491689	Choi,H.K., Kleinhofs,A. and An,G.H.	Nucleotide sequence of rice nitrate reductase genes.	Plant Mol. Biol.	13(6)	731-733	1989	_	OsNR1, NR1, nia1, OsNIA1, NIA1
21178	8647451	Chow,V.T. and Quek,H.H.	HEP-COP, a novel human gene whose product is highly homologous to the alpha-subunit of the yeast coatomer protein complex.	Gene	169(2)	223-227	1996		
21179	14605221	Christensen,T.M., Vejlupkova,Z., Sharma,Y.K., Arthur,K.M., Spatafora,J.W., Albright,C.A., Meeley,R.B., Duvick,J.P., Quatrano,R.S. and Fowler,J.E.	Conserved Subgroups and Developmental Regulation in the Monocot rop Gene Family.	Plant Physiol.	133(4)	1791-1808	2003	RAC4,RAC6,RAC5,RAC2,RAC1,RAC3,RAC7	OsRAC4, OsRac4, ROP4, OsRop4,OsRacB, RacB, OsRac6,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRAC2, OsRac2,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRac3,OSRAC7, OsRac7, ROP5, OsRop5
21182	7948920	Chung,Y.Y., Kim,S.R., Finkel,D., Yanofsky,M.F. and An,G.	Early flowering and reduced apical dominance result from ectopic expression of a rice MADS box gene.	Plant Mol. Biol.	26(2)	657-665	1994	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
21183	11706039	Chuong,S.D., Mullen,R.T. and Muench,D.G.	Identification of a rice RNA- and microtubule-binding protein as the multifunctional protein, a peroxisomal enzyme involved in the beta -oxidation of fatty acids.	J. Biol. Chem.	277(4)	2419-2429	2002	AIM1	MFP, OsAIM, OsCHD, CHD
21184	2152105	Claes,B., Dekeyser,R., Villarroel,R., M., Bauw,G., M. and Caplan,A.	Characterization of a rice gene showing organ-specific expression in response to salt stress and drought.	Plant Cell	2(1)	19-27	1990	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
21185	14660695	Cobbe,N. and Heck,M.M.S.	The Evolution of SMC Proteins: Phylogenetic Analysis and Structural Implications	Mol. Biol. Evol.	21(2)	332-347	2004	_,_,_,_,_,_	SMC1,SMC2,SMC5,SMC6,SMC3,SMC4, OsSMC4
21186	11444696	Collins,N., Park,R., Spielmeyer,W., Ellis,J. and Pryor,A.J.	Resistance gene analogs in barley and their relationship to rust resistance genes.	Genome	44(3)	375-381	2001	_,_,_,_	PIC22,PIC23,PIC24,PIC27
21187	12684538	Cooper,B., Clarke,J., Budworth,P., Kreps,J., Hutchison,D., Park,S., Guimil,S., Dunn,M., Luginbuhl,P., Ellero,C., Goff,S.A. and Glazebrook,J.	A network of rice genes associated with stress response and seed development.	Proc. Natl. Acad. Sci. U.S.A.	100(8)	4945-4950	2003	EF1G2,RDD2,RDD4,qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),EF1G,EEF1BG	OsEF1G2,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12,qOA-3-1 (oa3.1),qOA-8-1 (oa8.1),,eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1
21188	14750518	Cooper,B., Hutchison,D., Park,S., Guimil,S., Luginbuhl,P., Ellero,C., Goff,S.A. and Glazebrook,J.	Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle.	Plant Mol. Biol.	53(3)	273-279	2003	_,_,_,_,_,HOS59,CML7,_,_,_,_,_,_,_,_,_,_,TET13,_,RLCK377,CYCB2;1,GF14A,CYCB2;2,_,SSIVB,GLYR1,MC5,_,_,RAP1B,BZIP28,_	Osj10gBTF3, 10gBTF3, BTF3a,Orysa;E2F1, OsE2F1, E2F1,OsPUB2,OsPUB3, PUB3,Orysa;DP1, OsDP1, DP1,,OsCML7, OsSTKC,Orysa;DP3,Orysa;DP2, DP TF,,,,HS1,,,SIP6 ,SIP24 ,OsSAP, OsTET13,Osj3g1BTF3, BTF3a, Os03g1BTF3,OsRLCK377,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,GF14a, OsGF14a, WIN2, 14-3-3a,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsSgt1, SGT1, OsSGT1, Os SGT1,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2,OsGLYR1,OsMC5,X1, OsFDML3, FDML3,OsSAHH, SAHH,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2
21190	9177257	Cosgrove,D.J., Bedinger,P. and Durachko,D.M.	Group I allergens of grass pollen as cell wall-loosening agents.	Proc. Natl. Acad. Sci. U.S.A.	94(12)	6559-6564	1997	EXPB1A,EXPB1B	OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1,OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1
21191	10750717	Cunningham,F.X.,Jr. and Gantt,E.	Identification of multi-gene families encoding isopentenyl diphosphate isomerase in plants by heterologous complementation in Escherichia coli.	Plant Cell Physiol.	41(1)	119-123	2000	_	IPI, ipi
21192	14704272	Dai,S., Zhang,Z., Chen,S. and Beachy,R.N.	RF2b, a rice bZIP transcription activator, interacts with RF2a and is involved in symptom development of rice tungro disease	Proc. Natl. Acad. Sci. U.S.A.	101(2)	687-692	2004	RF2B,RF2A	RF2b, OsbZIP30,RF2a, OsbZIP75
21193		Darr,L.B., Godzina,S.M. and Matsuda,S.P.T.	A Rice cDNA (AF169966) Similar to Cycloartenol Synthase. (PGR99-155)	Plant Physiol.	121(2)	686	1999	_	OsOSC2, CAS1
21194	12591613	Day,R.B., Shibuya,N. and Minami,E.	Identification and characterization of two new members of the GRAS gene family in rice responsive to N-acetylchitooligosaccharide elicitor.	Biochim. Biophys. Acta	1625(3)	261-268	2003	CIGR1,CIGR2	OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36
21195	10371193	Deak,M., Casamayor,A., Currie,R.A., Downes,C.P. and Alessi,D.R.	Characterisation of a plant 3-phosphoinositide-dependent protein kinase-1 homologue which contains a pleckstrin homology domain.	FEBS Lett.	451(3)	220-226	1999	_	PDK1, OsPdk1, Pdk1
21196	2005872	Dehesh,K., Tepperman,J., Christensen,A.H. and Quail,P.H.	phyB is evolutionarily conserved and constitutively expressed in rice seedling shoots.	Mol. Gen. Genet.	225(2)	305-313	1991	PHYB,PHYA	phyB, PHYB1, OsPHYB, OsphyB,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21197	1396594	Dehesh,K., Hung,H., Tepperman,J.M. and Quail,P.H.	GT-2: a transcription factor with twin autonomous DNA-binding domains of closely related but different target sequence specificity.	EMBO J.	11(11)	4131-4144	1992	_,PHYA	OsGT-2, GT-2, OsMSL22, MSL22,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21199	15642712	Dian,W., Jiang,H. and Wu,P.	Evolution and expression analysis of starch synthase III and IV in rice.	J. Exp. Bot.	56(412)	623-632	2005	FLO5,SSIVB,SSIIIB,SSIVA	OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2,OsSSIIIb. SSIII-1,OsSSIVa, SSIV-1, OsSSIV-1
21201	9852132	Domon,C., Lorkovic,Z.J., Valcarcel,J. and Filipowicz,W.	Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.	J. Biol. Chem.	273(51)	34603-34610	1998	C3H60 ,C3H38  	OsC3H60, U2AF35a, U2AF35A, OsU2AF35a,OsC3H38, U2AF35B, OsU2AF35b
21202	12569397	Dong,A., Zhu,Y., Yu,Y., Cao,K., Sun,C. and Shen,W.H.	Regulation of biosynthesis and intracellular localization of rice and tobacco homologues of nucleosome assembly protein 1.	Planta.	216(4)	561-570	2003	_,_	Orysa;NAP1;2, OsNAP1_L2,Orysa;NAP1;1, OsNAP1_L1
21203	15980199	Dong,A., Liu,Z., Zhu,Y., Yu,F., Li,Z., Cao,K. and Shen,W.H.	Interacting Proteins and Differences in Nuclear Transport Reveal Specific Functions for the NAP1 Family Proteins in Plants.	Plant Physiol.	138(3)	1446-1456	2005	_,_,_	Orysa;NAP1;3, OsNAP1_L3,Orysa;NAP1;1, OsNAP1_L1,Orysa;NAP1;2, OsNAP1_L2
21204		Dong,H., Dong,J., He,Z. and Li,D.	A Rice Transposon Protein-like cDNA Is Induced by Magnaporthe grisea (Accession No. AF121139). (PGR99-042)	Plant Physiol.	119(3)	1149	1999	_	RIM2
21206	12527208	Druka,A., Kudrna,D., Rostoks,N., Brueggeman,R., D. and Kleinhofs,A.	Chalcone isomerase gene from rice (Oryza sativa) and barley (Hordeum vulgare): physical, genetic and mutation mapping.	Gene	302(1-2)	171-178	2003	_	gh1, GH1, OsCHI, Cfi, CHI
21207	14631652	Du,X.-l., Wang,D., Qian,X.-y., Jiang,L.-z., Chun,W., Li,K.-g., Shen,G.-a., Lin,C.-f. and Yang,J.-s.	cDNA cloning and expression analysis of the rice (Oryza sativa L.) RNase L inhibitor	DNA Seq.	14(4)	295-301	2003	ABCE2	OsABCE2, RLI
21208	11244114	Dubcovsky,J., Ramakrishna,W., SanMiguel,P.J., Busso,C.S., Yan,L., Shiloff,B.A. and Bennetzen,J.L.	Comparative sequence analysis of colinear barley and rice bacterial artificial chromosomes.	Plant Physiol.	125(3)	1342-1353	2001		
21209	12609047	Dubouzet,J.G., Sakuma,Y., Ito,Y., Kasuga,M., Dubouzet,E.G., Miura,S., Seki,M., Shinozaki,K. and Yamaguchi-Shinozaki,K.	OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.	Plant J.	33(4)	751-763	2003	DREB1A,DREB2A,DREB1C,DREB1B,DREB1D	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1
21210	7632927	E. and Kende,H.	Identification of a gibberellin-induced gene in deepwater rice using differential display of mRNA.	Plant Mol. Biol.	28(3)	589-592	1995	_,_	,
21211	9891412	E. and Kende,H.	Transcript level for a gene encoding a putative type 1a plasma membrane receptor is induced by gibberellin in deepwater rice.	Plant Cell Physiol.	39(11)	1127-1132	1998	_,CYCB2;1	OsDD3,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1
21212	8938426	E., Sauter,M., Wilford,R. and Kende,H.	The electronic Plant Gene Register.	Plant Physiol.	112(3)	1397-1400	1996		
21213	9275237	E., Jagoueix,S. and Kende,H.	Expression of an ortholog of replication protein A1 (RPA1) is induced by gibberellin in deepwater rice.	Proc. Natl. Acad. Sci. U.S.A.	94(18)	9979-9983	1997	RPA1	OsRPA1, OsRPA70b, RPA70b
21214	11876823	Elias,M., Potocky,M., Cvrckova,F. and V.	Molecular diversity of phospholipase D in angiosperms.	BMC Genomics.	3(1)	2	2002	PLDalpha5,PLDalpha8,PLDalpha2,PLDalpha6,PLDalpha7,PLDkappa,PLDALPHA3,PLDalpha4,PLDbeta1,PLDbeta2,PLDzeta1,PLDzeta2,PLDdelta2,PLDdelta3,PLDalpha1,PLDdelta1	OsPLDalpha5, RPLD4, OsPLDeta3,OsPLDalpha8, OsPLDlambda,OsPLDalpha2,OsPLDalpha6, OsPLDeta1, OsPLDmu,OsPLDalpha7, OsPLDtheta,OsPLDkappa,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2,OsPLDalpha4, RPLD3, OsPLDeta2,OsPLDbeta1,OsPLDbeta2, OsSTA86,OsPLDzeta1, OsPLDrho1 ,OsPLDzeta2, OsPLDrho2,OsPLDdelta2, RPLD5, OsPLDnu1,OsPLDdelta3, OsPLDnu2,RPLD1, PLD1, OsPLDalpha1,OsPLDdelta1, OsPLDdelta, OsSTA233
21215	7764623	F., Dekeyser,R., Garcia,A.B., Claes,B., Gielen,J., M. and Caplan,A.B.	Heat-inducible rice hsp82 and hsp70 are not always co-regulated.	Planta.	193(1)	57-66	1994	HSP82D,HSP82C,_,HSP82B,HSP82A	OsHSP82D, hsp82D,OsHSP82C, hsp82C,HSP70, hsp70,OsHSP82, hsp82B, HSP82,OsHSP82A, hsp82A, HSP90, OsHSP81, HSP81
21216	7972513	F., Dekeyser,R., Gielen,J., M. and Caplan,A.	Characterization of a S-adenosylmethionine synthetase gene in rice.	Plant Physiol.	105(4)	1463-1464	1994	_	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS
21218	1840687	Fang,R.X., Pang,Z., Gao,D.M., Mang,K.Q. and Chua,N.H.	cDNA sequence of a virus-inducible, glycine-rich protein gene from rice.	Plant Mol. Biol.	17(6)	1255-1257	1991	_	GRP, Osgrp-2, OsGRP-2, GRCWP
21219	9687064	Fang,Z., Kamasani,U. and Berkowitz,G.A.	Molecular cloning and expression characterization of a rice K+ channel beta subunit.	Plant Mol. Biol.	37(4)	597-606	1998	_	KOB1
21220	9843485	Favery,B., Lecomte,P., Gil,N., Bechtold,N., Bouchez,D., Dalmasso,A. and Abad,P.	RPE, a plant gene involved in early developmental steps of nematode feeding cells.	EMBO J.	17(23)	6799-6811	1998	_	RPE
21221	2308863	Feng,G.H., Wen,L., Huang,J.K., Shorrosh,B.S., Muthukrishnan,S. and Reeck,G.R.	Nucleotide sequence of a cloned rice genomic DNA fragment that encodes a 10 kDa prolamin polypeptide.	Nucleic Acids Res.	18(3)	683	1990	_	Prol-01, CysR10, crP10, pro10.1
21222	12447439	Feng,Q. et al.  (Feng,Q., Zhang,Y., Hao,P., Wang,S., Fu,G., Huang,Y., Li,Y., Zhu,J., Liu,Y., Hu,X., Jia,P., Zhang,Y., Zhao,Q., Ying,K., Yu,S., Tang,Y., Weng,Q., Zhang,L., Lu,Y., Mu,J., Lu,Y., Zhang,L.S., Yu,Z., Fan,D., Liu,X., Lu,T., Li,C., Wu,Y., Sun,T., Lei,H., Li,T., Hu,H., Guan,J., Wu,M., Zhang,R., Zhou,B., Chen,Z., Chen,L., Jin,Z., Wang,R., Yin,H., Cai,Z., Ren,S., Lv,G., Gu,W., Zhu,G., Tu,Y., Jia,J., Zhang,Y., Chen,J., Kang,H., Chen,X., Shao,C., Sun,Y., Hu,Q., Zhang,X., Zhang,W., Wang,L., Ding,C., Sheng,H., Gu,J., Chen,S., Ni,L., Zhu,F., Chen,W., Lan,L., Lai,Y., Cheng,Z., Gu,M., Jiang,J., Li,J., Hong,G., Xue,Y. and Han,B.)	Sequence and analysis of rice chromosome 4.	Nature	420(6913)	316-320	2002		
21223	11756687	Feschotte,C. and Wessler,S.R.	Mariner-like transposases are widespread and diverse in flowering plants.	Proc. Natl. Acad. Sci. U.S.A.	99(1)	280-285	2002	MAR2B,MAR3,MAR5,MAR4,MAR1	Osmar2b,Osmar3,Osmar5,Osmar4,Osmar1
21224	10393983	Feuillet,C. and Keller,B.	High gene density is conserved at syntenic loci of small and large grass genomes.	Proc. Natl. Acad. Sci. U.S.A.	96(14)	8265-8270	1999	_,_,_,_	Os8Tak1,Os8Tak3,Os8Lrk, Os8Lrk.p,Os8Tak2, YK21, OsRLCK12, RLCK12
21225	8041700	Fitch,W.M. and Ayala,F.J.	The superoxide dismutase molecular clock revisited.	Proc. Natl. Acad. Sci. U.S.A.	91(15)	6802-6807	1994	SODCC2	Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2
21226	10469647	Fowler,S., Lee,K., Onouchi,H., Samach,A., Richardson,K., Morris,B., Coupland,G. and Putterill,J.	GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains.	EMBO J.	18(17)	4679-4688	1999	GI	OsGI, Gi, Os-GI
21227	9747848	Frances,H., Bligh,J., Larkin,P.D., Roach,P.S., Jones,C.A., Fu,H. and Park,W.D.	Use of alternate splice sites in granule-bound starch synthase mRNA from low-amylose rice varieties.	Plant Mol. Biol.	38(3)	407-415	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21228	11139406	Franceschetti,M., Hanfrey,C., Scaramagli,S., Torrigiani,P., Bagni,N., Burtin,D. and Michael,A.J.	Characterization of monocot and dicot plant S-adenosyl-l-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames.	Biochem. J.	353( Pt 2)	403-409	2001	SAMDC2,SAMDC	SamDC2, AdoMetDC2, OsSAMDC2,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
21230	9748665	Francisco,P.B.,Jr., Zhang,Y., Park,S.Y., Ogata,N., Yamanouchi,H. and Nakamura,Y.	Genomic DNA sequence of a rice gene coding for a pullulanase-type of starch debranching enzyme.	Biochim. Biophys. Acta	1387(1-2)	469-477	1998	PUL	OsPUL, SDBE, OsPUL3, RE
21231	8550584	Frandsen,G., Muller-Uri,F., Nielsen,M., Mundy,J. and Skriver,K.	Novel plant Ca(2+)-binding protein expressed in response to abscisic acid and osmotic stress.	J. Biol. Chem.	271(1)	343-348	1996	_	EFA27
21232	11114160	Frye,C.A., Tang,D. and Innes,R.W.	Negative regulation of defense responses in plants by a conserved MAPKK kinase.	Proc. Natl. Acad. Sci. U.S.A.	98(1)	373-378	2001	ACDR1	OsEDR1, OsACDR1, EDR1
21233	15803319	Fujino,K., Sekiguchi,H. and Kiguchi,T.	Identification of an active transposon in intact rice plants.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	273(2)	150-157	2005	NDART1-7,NDART1-11,NDART1-12,NDART1-A,_,NDART1-3(6),NDART1-3(8),NDART1-1,NDART1-9,NDART1-2,NDART1-4(3-2),NDART1-4(3-1),DART0501,DART0401,DART1201,DART1001,DART0402,DART0101,DART	nDART1-7,nDART1-11,nDART1-12,nDart1-A,MgPIX MT,nDART1-3(6),nDART1-3(8),nDART1-1,nDART1-9,nDART1-2,nDart1-4(3-2),nDart1-4(3-1),Dart0501,Dart0401,Dart1201,Dart1001,Dart0402,Dart0101,Dart
21234	10377457	Fujisawa,Y., Kato,T., Ohki,S., Ishikawa,A., Kitano,H., Sasaki,T., Asahi,T. and Iwasaki,Y.	Suppression of the heterotrimeric G protein causes abnormal morphology, including dwarfism, in rice.	Proc. Natl. Acad. Sci. U.S.A.	96(13)	7575-7580	1999	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
21235	10333591	Fujita,N., Kubo,A., Francisco,P.B.,Jr., Nakakita,M., Harada,K., Minaka,N. and Nakamura,Y.	Purification, characterization, and cDNA structure of isoamylase from developing endosperm of rice.	Planta.	208(2)	283-293	1999	ISA1	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1
21236	10395929	Fukuda,A., Nakamura,A. and Tanaka,Y.	Molecular cloning and expression of the Na+/H+ exchanger gene in Oryza sativa.	Biochim. Biophys. Acta	1446(1-2)	149-155	1999	NHX1	OsNHX1
21239	8490131	Fukuhara,T., Moriyama,H., Pak,J.Y., Hyakutake,H. and Nitta,T.	Enigmatic double-stranded RNA in Japonica rice.	Plant Mol. Biol.	21(6)	1121-1130	1993		
21240	7629126	Fukuhara,T., Moriyama,H. and Nitta,T.	The unusual structure of a novel RNA replicon in rice.	J. Biol. Chem.	270(30)	18147-18149	1995		
21241	7909914	Fukuoka,H., Kageyama,Y., Yamamoto,K. and Takeda,G.	Rapid conversion of rDNA intergenic spacer of diploid mutants of rice derived from gamma-ray irradiated tetraploids.	Mol. Gen. Genet.	243(2)	166-172	1994		
21243	12602891	Furukawa,T., Kimura,S., Ishibashi,T., Mori,Y., Hashimoto,J. and Sakaguchi,K.	OsSEND-1: a new RAD2 nuclease family member in higher plants.	Plant Mol. Biol.	51(1)	59-70	2003	SEND1	OsSEND-1, OsSEND1
21244	8204833	Fushimi,T., Umeda,M., Shimazaki,T., Kato,A., Toriyama,K. and Uchimiya,H.	Nucleotide sequence of a rice cDNA similar to a maize NADP-dependent malic enzyme.	Plant Mol. Biol.	24(6)	965-967	1994	NADP-ME1	NADP-ME, ME6, OschlME, XcrMal1
21245	15247400	Gallagher,C.E., Matthews,P.D., Li,F. and Wurtzel,E.T.	Gene Duplication in the Carotenoid Biosynthetic Pathway Preceded Evolution of the Grasses.	Plant Physiol.	135(3)	1776-1783	2004	PSY1,PSY2	PSY1, OsPSY1 ,PSY2, OsPSY2
21247	12228545	Garcia,A., Claes,B., Villarroel,R., M. and Caplan,A.	Genomic sequence corresponding to the salT (GenBank Z25811) gene from rice	Plant Physiol.	108(3)	1342	1995	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
21248	9654133	Garcia-Garrido,J.M., Menossi,M., Puigdomenech,P., Martinez-Izquierdo,J.A. and Delseny,M.	Characterization of a gene encoding an abscisic acid-inducible type-2 lipid transfer protein from rice.	FEBS Lett.	428(3)	193-199	1998	LTP2,LTP1	nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,Ltp1, RLTP1
21249	12795699	Garciadeblas,B., Senn,M.E., Banuelos,M.A. and Rodriguez-Navarro,A.	Sodium transport and HKT transporters: the rice model.	Plant J.	34(6)	788-801	2003	HKT4,HKT1,HKT7,HKT2,HKT5,HKT9,HKT3,HKT6,HKT8	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsHKT7, OsHKT1;4, HKT1;4,OsHKT2, OsHKT2;2,OsHKT5, OsHKT1;2,OsHKT9, OsHKT2;4,OsHKT3, OsHKT2;3,OsHKT6, OsHKT1;3, HKT1;3,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
21250	15247372	Ge,L., Chen,H., Jiang,J.F., Zhao,Y., Xu,M.L., Xu,Y.Y., Tan,K.H., Xu,Z.H. and Chong,K.	Overexpression of OsRAA1 Causes Pleiotropic Phenotypes in Transgenic Rice Plants, including Altered Leaf, Flower, and Root Development and Root Response to Gravity.	Plant Physiol.	135(3)	1502-1513	2004	RAA1	OsRAA1
21251	10588717	Ge,S., Sang,T., Lu,B.R. and Hong,D.Y.	Phylogeny of rice genomes with emphasis on origins of allotetraploid species.	Proc. Natl. Acad. Sci. U.S.A.	96(25)	14400-14405	1999	ADH1,ADH2,_	Adh1, Adh1/2, adh1/adh2, OsADH1,Adh2*, Adh2,matK, ORF542 
21252	10417331	Genschel,U., Powell,C.A., Abell,C. and Smith,A.G.	The final step of pantothenate biosynthesis in higher plants: cloning and characterization of pantothenate synthetase from Lotus japonicus and Oryza sativum (rice).	Biochem. J.	341(PT 3)	669-678	1999	_	panC, PS
21253	9750346	Glover,J., Grelon,M., Craig,S., Chaudhury,A. and Dennis,E.	Cloning and characterization of MS5 from Arabidopsis: a gene critical in male meiosis.	Plant J.	15(3)	345-356	1998	_	
21255	12182709	Golldack,D., Su,H., Quigley,F., Kamasani,U.R., Munoz-Garay,C., Balderas,E., Popova,O.V., Bennett,J., Bohnert,H.J. and Pantoja,O.	Characterization of a HKT-type transporter in rice as a general alkali cation transporter.	Plant J.	31(4)	529-542	2002	HKT1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1
21256	16021404	Gothandam,K.M., Kim,E.S., Cho,H. and Chung,Y.Y.	OsPPR1, a pentatricopeptide repeat protein of rice is essential for the chloroplast biogenesis.	Plant Mol. Biol.	58(3)	421-433	2005	PPR1	OsPPR1, rPPR1
21257	9748637	Goto,S., Akagawa,T., Kojima,S., Hayakawa,T. and Yamaya,T.	Organization and structure of NADH-dependent glutamate synthase gene from rice plants.	Biochim. Biophys. Acta	1387(1-2)	298-308	1998	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1
21258	9065695	Greco,R., Stagi,L., Colombo,L., Angenent,G.C., Sari-Gorla,M. and Pe,M.E.	MADS box genes expressed in developing inflorescences of rice and sorghum.	Mol. Gen. Genet.	253(5)	615-623	1997	MADS7,MADS24	OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS24, MADS8, OsMADS8, OsMADS8/24 
21259		Gross,J., Stein,J.R., Fett-Neto,A.G. and Fett,J.P.	Iron homeostasis related genes in rice	Genet. Mol. Biol.	26(4)	477-497	2003	YSL2,FER2,YSL1,YSL15,YSL7,YSL14,YSL6,YSL5,YSL12,YSL16,YSL4,YSL17,YSL3,_,_,FER1,YSL18,YSL9,YSL13	OsYSL2, Os-YSL2, OsYs6 ,OsFER2, OsFer2,OsYSL1, OsYs1,OsYSL15, OsYs7,OsYSL7, OsYs4,OsYSL14, OsYs5,OsYSL6, OsYs8 ,OsYSL5, OsYs9 ,OsYSL12, OsYs11 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL4, OsYs17 ,OsYSL17, OsYs18 ,OsYSL3, OsYs16 ,OsYs15,OsYs10,OsFER1, OsFer1 ,OsYSL18, OsYs2 ,OsYSL9, OsYs13 ,OsYSL13, OsYs12 
21260	15973413	Gu,K., Yang,B., Tian,D., Wu,L., Wang,D., Sreekala,C., Yang,F., Chu,Z., Wang,G.-L., White,F.F. and Yin,Z.	R gene expression induced by a type-III effector triggers disease resistance in rice.	Nature	435(7045)	1122-1125	2005	XA27	Xa27(t), Xa27(t)*, Xa27
21262	9890811	Guan,J.C., Chang,F.C., Tseng,T.S., Chang,P.F.L., Yeh,K.W., Chen,Y.M. and Lin,C.Y.	Structure of Rice Genes Encoding Three Class-I Low-Molecular-Mass Heat-Shock Proteins (Accession Nos. U83669, U83670 and U83671). (PGR98-178)	Plant Physiol.	118(3)	1101	1998	HSP18.0,HSP17.7,HSP17.3	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,OsHsp17.3, OsHSP17.3, Oshsp17.3 
21263		Gupta,P., Raghuvanshi,S. and Tyagi,A.K.	PCR-Amplification and cloning of the coding region of a cDNA for a reversibly glycosylated polypeptide from rice with possible involvement in the biosynthesis of glucans	J. Plant Biochem. Biotechnol.	9	99-102	2000	UAM1	OsUAM1, RGP-1, Osgls1
21264	12596875	Ha,S.B., Lee,B.C., Lee,D.E., Kuk,Y.I., Lee,A.Y., Han,O. and Back,K.	Molecular characterization of the gene encoding rice allene oxide synthase and its expression.	Biosci. Biotechnol. Biochem.	66(12)	2719-2722	2002	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1
21265	14988482	Haga,K. and Iino,M.	Phytochrome-mediated transcriptional up-regulation of ALLENE OXIDE SYNTHASE in rice seedlings.	Plant Cell Physiol.	45(2)	119-128	2004	AOS4,AOS1,AOS3	OsAOS4, CYP74A4, OsHPL1, HPL1,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2
21266	15598797	Haga,K., Takano,M., Neumann,R. and Iino,M.	The Rice COLEOPTILE PHOTOTROPISM1 Gene Encoding an Ortholog of Arabidopsis NPH3 Is Required for Phototropism of Coleoptiles and Lateral Translocation of Auxin.	Plant Cell	17(1)	103-115	2005	CPT1	cpt1
21267	10586516	Hamanaka,S., Ohtsu,K., Kadowaki,K., Nakazono,M. and Hirai,A.	Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice: comparison of its expression with nuclear-encoded and mitochondrial-encoded COX genes.	Genes Genet. Syst.	74(3)	71-75	1999	_,_,_	COX5c ,coxVb, COX5b,coxI, COX1, cox1-1, cox1
21269	10659772	Han,F., Kilian,A., Chen,J.P., Kudrna,D., Steffenson,B., Yamamoto,K., Matsumoto,T., Sasaki,T. and Kleinhofs,A.	Sequence analysis of a rice BAC covering the syntenous barley Rpg1 region	Genome	42(6)	1071-1076	1999		
21271	9112770	Hansen,J.D., Pyee,J., Xia,Y., Wen,T.J., Robertson,D.S., Kolattukudy,P.E., Nikolau,B.J. and Schnable,P.S.	The glossy1 locus of maize and an epidermis-specific cDNA from Kleinia odora define a class of receptor-like proteins required for the normal accumulation of cuticular waxes.	Plant Physiol.	113(4)	1091-1100	1997	_	OsGL1-3
21272	3428916	Hariharan,N. and Padayatty,J.D.	Ribosomal RNA gene repeat units in rice embryos.	Indian J. Biochem. Biophys.	24(3)	157-164	1987	5.8S rRNA,17S rRNA,25S rRNA,25S rRNA	5.8S rRNA,17S rRNA,25S rRNA,25S rRNA
21273	10571893	Hartwell,J., Gill,A., Nimmo,G.A., Wilkins,M.B., Jenkins,G.I. and Nimmo,H.G.	Phosphoenolpyruvate carboxylase kinase is a novel protein kinase regulated at the level of expression.	Plant J.	20(3)	333-342	1999		
21274	8499614	Hashimoto,H., Nishi,R., Umeda,M., Uchimiya,H. and Kato,A.	Isolation and characterization of a rice cDNA clone encoding ATP/ADP translocator.	Plant Mol. Biol.	22(1)	163-164	1993	ANT	ant, ricANC1, ANC1
21275	1376401	Hashimoto,J., Hirabayashi,T., Hayano,Y., Hata,S., Ohashi,Y., Suzuka,I., Utsugi,T., Toh-e,A. and Kikuchi,Y.	Isolation and characterization of cDNA clones encoding cdc2 homologues from Oryza sativa: a functional homologue and cognate variants.	Mol. Gen. Genet.	233(1-2)	10-16	1992	CDC2-2,CDC2-1	cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1
21277	15111725	Hashimoto,K., Saito,M., Matsuoka,H., Iida,K. and Iida,H.	Functional Analysis of a Rice Putative Voltage-Dependent Ca(2+) Channel, OsTPC1, Expressed in Yeast Cells Lacking its Homologous Gene CCH1.	Plant Cell Physiol.	45(4)	496-500	2004	TPC1	OsTPC1, Tpc1, OsCC1, OsCL1 pore
21278	15169937	Hashimoto,M., Kisseleva,L., Sawa,S., Furukawa,T., Komatsu,S. and Koshiba,T.	A Novel Rice PR10 Protein, RSOsPR10, Specifically Induced in Roots by Biotic and Abiotic Stresses, Possibly via the Jasmonic Acid Signaling Pathway.	Plant Cell Physiol.	45(5)	550-559	2004	JIOSPR10,_	JIOsPR10, OsPR10, PR10 ,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10
21279	1995335	Hata,S.	cDNA cloning of a novel cdc2+/CDC28-related protein kinase from rice.	FEBS Lett.	279(1)	149-152	1991	CDKD;1	CDKD;1, Orysa;CDKD;1, R2, CAK R2, CDKD1;3 
21280	8193305	Hattori,T., Terada,T. and Hamasuna,S.T.	Sequence and functional analyses of the rice gene homologous to the maize Vp1.	Plant Mol. Biol.	24(5)	805-810	1994	VP1	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
21281	7599651	Hattori,T., Terada,T. and Hamasuna,S.	Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1.	Plant J.	7(6)	913-925	1995	EM,VP1	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
21282	11842136	Hazen,S.P., Scott-Craig,J.S. and Walton,J.D.	Cellulose synthase-like genes of rice.	Plant Physiol.	128(2)	336-340	2002	CSLA8,CSLA10,CSLC4,CSLC5,CSLC6,CSLC8,CSLE3,CSLE4,CSLE5,CSLF5,CSLA1,CSLA2,CSLA3,CSLA4,CSLA5,CSLA7,CSLA9,CSLC1,CSLC2,CSLC3,CSLC7,CSLC9,CSLD1,CSLD2,CSLD3,CSLE1,CSLF1,CSLF2,CSLF4,CSLF7,CSLH1,CSLH2,CSLE2,CSLA6,CSLF6,ND1,CSLF3	OsCslA8,OsCslA10,OsCslC4,OsCslC5,OsCslC6,OsCslC8,OsCslE3,OsCslE4,OsCslE5,OsCslF5,OsCslA1, OsCSLA1 ,OsCslA2, OsCSLA2,OsCslA3, OsCSLA3 ,OsCslA4, OsCSLA4 ,OsCslA5, OsCSLA5 ,OsCslA7, OsCSLA7,OsCslA9, OsCSLA9 ,OsCslC1, OsCSLC1,OsCslC2, OsCSLC2 ,OsCslC3, OsCSLC3 ,OsCslC7, OsCSLC7 ,OsCslC9, OsCSLC9,csld1, OsCSLD1, OsCslD1,OsCslD2, OsCSLD2 ,OsCSLD3,OsCslE1, OsCSLE1 ,OsCslF1, OsCSLF1 ,OsCslF2, OsCSLF2,OsCslF4, OsCSLF4 ,OsCslF7, OsCSLF7 ,OsCslH1, OsCSLH1 ,OsCslH2, OsCSLH2 ,OsCslE2, OsCSLE2 ,OsCslA6, OsCSLA6,OsCslF6, OsCSLF6, OsCLD3, CLD3,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1,OsCslF3, OsCSLF3 
21283	10624015	He,C., Fong,S.H., Yang,D. and Wang,G.L.	BWMK1, a novel MAP kinase induced by fungal infection and mechanical wounding in rice.	Mol. Plant Microbe Interact.	12(12)	1064-1073	1999	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S
21284	12100484	Heller-Uszynska,K., Schnippenkoetter,W. and Kilian,A.	Cloning and characterization of rice (Oryza sativa L) telomerase reverse transcriptase, which reveals complex splicing patterns.	Plant J.	31(1)	75-86	2002	TERT	OsTERT
21285	2374721	Hidaka,S., Kadowaki,K., Tsutsumi,K. and Ishikawa,K.	Nucleotide sequence of the rice cytoplasmic aldolase cDNA.	Nucleic Acids Res.	18(13)	3991	1990	_	GSC 233, AldC-2
21286	15960616	Hidema,J., Teranishi,M., Iwamatsu,Y., Hirouchi,T., Ueda,T., Sato,T., Burr,B., Sutherland,B.M., Yamamoto,K. and Kumagai,T.	Spontaneously occurring mutations in the cyclobutane pyrimidine dimer photolyase gene cause different sensitivities to ultraviolet-B in rice.	Plant J.	43(1)	57-67	2005	CPD	CPD
21288	8605302	Higo,K. and Higo,H.	Cloning and characterization of the rice CatA catalase gene, a homologue of the maize Cat3 gene.	Plant Mol. Biol.	30(3)	505-521	1996	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
21289	11169192	Higuchi,K., Watanabe,S., Takahashi,M., Kawasaki,S., Nakanishi,H., Nishizawa,N.K. and Mori,S.	Nicotianamine synthase gene expression differs in barley and rice under Fe-deficient conditions.	Plant J.	25(2)	159-167	2001	NAS1,NAS2	OsNAS1,OsNAS2
21290	3666457	Higuchi,W. and Fukazawa,C.	A rice glutelin and a soybean glycinin have evolved from a common ancestral gene.	Gene	55(2-3)	245-253	1987	GLUA1	Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16
21291	8066137	Hihara,Y., Umeda,M., Hara,C., Toriyama,K. and Uchimiya,H.	Nucleotide sequence of a rice acidic ribosomal phosphoprotein P0 cDNA.	Plant Physiol.	105(2)	753-754	1994	_	YK704, Os60sP0
21292	8704128	Hihara,Y., Hara,C. and Uchimiya,H.	Isolation and characterization of two cDNA clones for mRNAs that are abundantly expressed in immature anthers of rice (Oryza sativa L.).	Plant Mol. Biol.	30(6)	1181-1193	1996	_,LAP6	YY1, OsLTPc2, OsLtpIII.2, LTP45,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6
21293	9701579	Himelblau,E., Mira,H., Lin,S.J., Culotta,V.C., Penarrubia,L. and Amasino,R.M.	Identification of a functional homolog of the yeast copper homeostasis gene ATX1 from Arabidopsis.	Plant Physiol.	117(4)	1227-1234	1998	CCH	OsATX1, CCH, ATX1
21295		Hirano,H.Y. and Sano,Y.	Molecular characterisation of the waxy locus of rice	Plant Cell Physiol.	32(7)	989-997	1991	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21296	9718725	Hirano,H.Y., Eiguchi,M. and Sano,Y.	A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice.	Mol. Biol. Evol.	15(8)	978-987	1998	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21297	1376404	Hirochika,H., Fukuchi,A. and Kikuchi,F.	Retrotransposon families in rice.	Mol. Gen. Genet.	233(1-2)	209-216	1992	TOS1-1,TOS1-2,_,_,TOS3,TOS2,TOS1,TOS4,TOS5	Tos1-1,Tos1-2,,,Tos3, Tos3-1,Tos2, Tos2-1,Tos1*, Tos1, Osr14, Tos4,Tos4,Tos5
21298	8755553	Hirochika,H., Sugimoto,K., Otsuki,Y., Tsugawa,H. and Kanda,M.	Retrotransposons of rice involved in mutations induced by tissue culture.	Proc. Natl. Acad. Sci. U.S.A.	93(15)	7783-7788	1996	TOS6,TOS7,TOS8,TOS9,TOS10,TOS11,TOS12,TOS14,TOS13,TOS15,TOS16,TOS18,TOS20,TOS17	Tos6,Tos7,Tos8,Tos9,Tos10,Tos11,Tos12,Tos14,Tos13,Tos15,Tos16,Tos18,Tos20,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
21299	15849298	Hirose,N., Makita,N., Yamaya,T. and Sakakibara,H.	Functional Characterization and Expression Analysis of a Gene, OsENT2, Encoding an Equilibrative Nucleoside Transporter in Rice Suggest a Function in Cytokinin Transport.	Plant Physiol.	138(1)	196-206	2005	ENT1,ENT2,ENT3,ENT4	OsENT1,OsENT2,OsENT3,OsENT4
21300	9522469	Hirose,T., Imaizumi,N., Scofield,G.N., Furbank,R.T. and Ohsugi,R.	cDNA cloning and tissue specific expression of a gene for sucrose transporter from rice (Oryza sativa L.).	Plant Cell Physiol.	38(12)	1389-1396	1997	SUT1	OsSUT1, OsSUT2
21301	11978873	Hirose,T., Takano,M. and Terao,T.	Cell Wall Invertase in Developing Rice Caryopsis: Molecular Cloning of OsCIN1 and Analysis of its Expression in Relation to its Role in Grain Filling.	Plant Cell Physiol.	43(4)	452-459	2002	SUT1,CIN1,_	OsSUT1, OsSUT2,OSCIN1, OsCIN1,OSINV1, OsINV1, INV1, OsCIN7, OsCIN8
21302	10631249	Ho,S.L., Tong,W.F. and Yu,S.M.	Multiple mode regulation of a cysteine proteinase gene expression in rice.	Plant Physiol.	122(1)	57-66	2000	EP3A	OsEP3A
21303	10611387	Hobo,T., Kowyama,Y. and Hattori,T.	A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription.	Proc. Natl. Acad. Sci. U.S.A.	96(26)	15348-15353	1999	TRAB1,VP1	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
21304	12445121	Hong,Z., Ueguchi-Tanaka,M., Shimizu-Sato,S., Inukai,Y., Fujioka,S., Shimada,Y., Takatsuto,S., Agetsuma,M., Yoshida,S., Watanabe,Y., Uozu,S., Kitano,H., Ashikari,M. and Matsuoka,M.	Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem.	Plant J.	32(4)	495-508	2002	D61,BRD1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
21305	11489190	Horie,T., Yoshida,K., Nakayama,H., Yamada,K., Oiki,S. and Shinmyo,A.	Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa	Plant J.	27(2)	129-138	2001	HKT1,HKT2	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsHKT2, OsHKT2;2
21306	7991697	Hossain,M.A., Huq,E., Hodges,T.K. and E.	Sequence of a cDNA from Oryza sativa (L.) encoding the pyruvate decarboxylase 1 gene.	Plant Physiol.	106(2)	799-800	1994	PDC1	pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2
21307	7846174	Hossain,M.A., McGee,J.D., Grover,A., Dennis,E.S., Peacock,W.J., Hodges,T.K. and E.S.].	Nucleotide sequence of a rice genomic pyruvate decarboxylase gene that lacks introns: a pseudo-gene?	Plant Physiol.	106(4)	1697-1698	1994	PDC3	pdc3*, pdc3, OsPDC3, OsSTA202
21308	8806407	Hossain,M.A., Huq,E., Grover,A., Dennis,E.S., Peacock,W.J. and Hodges,T.K.	Characterization of pyruvate decarboxylase genes from rice.	Plant Mol. Biol.	31(4)	761-770	1996	PDC3,PDC1,PDC2	pdc3*, pdc3, OsPDC3, OsSTA202,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2,pdc2*, pdc2
21309	9630507	Hotta,H., Aoki,N., Matsuda,T. and Adachi,T.	Molecular analysis of a novel protein kinase in maturing rice seed.	Gene	213(1-2)	47-54	1998	SAPK3	OsSAPK3, REK
21310	15684019	Houston,N.L., Fan,C., Xiang,Q.Y., Schulze,J.M., Jung,R. and Boston,R.S.	Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins.	Plant Physiol.	137(2)	762-778	2005	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	PDIL1;2, PDIL1-2, PDIL 1-2, OsPDIL1-2,PDIL1;3, PDIL1-3, PDIL 1-3, OsPDIL1-3,PDIL1;4, PDIL1-4, PDIL 1-4, OsPDIL1-4,PDIL1;5, PDIL1-5, PDIL 1-5, OsPDIL1-5,PDIL5;1, PDIL5-1, PDIL 5-1, OsPDIL5-1,PDIL5;4, PDIL5-4, PDIL 5-4, OsPDIL5-4,OsQSOXL1,OsAPRL4,OsAPRL6,PDIL5;3, PDIL5-3, PDIL 5-3, OsPDIL5-3,OsAPRL2, APRL2,OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,PDIL2;1, OsPDIL2;1, PDIL2-1, OsPDIL2-1,PDIL2;3, PDIL2-3, PDIL 2-3, OsPDIL2-3, PDIL 2-3,PDIL5;2, OsPDIL5;2, PDIL5-2, OsPDIL5-2,PDIL2;2, PDIL2-2, PDIL 2-2, OsPDIL2-2,OsAPRL5,OsAPRL1,OsAPRL3
21311	9773271	Hsieh,H.M. and Huang,P.C.	Promoter structure and activity of type 1 rice metallothionein-like gene.	DNA Seq.	9(1)	9-17	1998	MTI1A	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
21312	7632910	Hsieh,H.M., Liu,W.K. and Huang,P.C.	A novel stress-inducible metallothionein-like gene from rice.	Plant Mol. Biol.	28(3)	381-389	1995	MTI1A	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
21313	8980501	Hsieh,H.M., Liu,W.K., Chang,A. and Huang,P.C.	RNA expression patterns of a type 2 metallothionein-like gene from rice.	Plant Mol. Biol.	32(3)	525-529	1996	MT2A,MTI1A	OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
21315	8849907	Hu,J., Anderson,B. and Wessler,S.R.	Isolation and characterization of rice R genes: evidence for distinct evolutionary paths in rice and maize.	Genetics	142(3)	1021-1031	1996	RB,RA	Rb, Rb*, bhlh165, OsbHLH165,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2
21317	12645266	Huang,J., Wang,J.F., Zhang,H.S., Cao,Y.J., Lin,C.F., Wang,D. and Yang,J.S.	In silico cloning of glucose-6-phosphate dehydrogenase cDNA from rice (Oryza sativa L.)	Acta Genetica Sinica	29(11)	1012-1016	2002	_	OsG6PDH2, OsG6PDH1, OsG6PDH
21318	14672408	Huang,J., Zhang,H., Wang,J. and Yang,J.	Molecular cloning and characterization of rice 6-phosphogluconate dehydrogenase gene that is up-regulated by salt stress.	Mol. Biol. Rep.	30(4)	223-227	2003	_	Os6PGDH1, Os6PGDH
21319	15354353	Huang,J., Wang,J., Qiu,S. and Zhang,H.	Isolation and characterization of two cDNAs encoding translation initiation factor 1A from rice(Oryza sativa L.).	DNA Seq.	15(1)	39-43	2004	EIF1A1,EIF1A2	OseIF1A-1,OseIF1A-2
21320	16172918	Huang,J., Wang,J. and Zhang,H.	Rice ZFP15 Gene Encoding for a Novel C2H2-type Zinc Finger Protein Lacking DLN box, is Regulated by Spike Development but not by Abiotic Stresses.	Mol. Biol. Rep.	32(3)	177-183	2005	ZFP15	ZFP 15
21321	1893114	Huang,J.K., Wen,L., Swegle,M., Tran,H.C., Thin,T.H., Naylor,H.M., Muthukrishnan,S. and Reeck,G.R.	Nucleotide sequence of a rice genomic clone that encodes a class I endochitinase.	Plant Mol. Biol.	16(3)	479-480	1991	CHT3	Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11
21322	9063969	Huang,J.W., Chen,J.T., Yu,W.P., Shyur,L.F., Wang,A.Y., Sung,H.Y., Lee,P.D. and Su,J.C.	Complete structures of three rice sucrose synthase isogenes and differential regulation of their expressions.	Biosci. Biotechnol. Biochem.	60(2)	233-239	1996	RSUS2,RSUS3,RSUS1	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2
21323	2263460	Huang,N., Koizumi,N., Reinl,S. and Rodriguez,R.L.	Structural organization and differential expression of rice alpha-amylase genes.	Nucleic Acids Res.	18(23)	7007-7014	1990	AMY3E,AMY1B,AMY1A,AMY1C,AMY3D	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
21324	2102847	Huang,N., Sutliff,T.D., Litts,J.C. and Rodriguez,R.L.	Classification and characterization of the rice alpha-amylase multigene family.	Plant Mol. Biol.	14(5)	655-668	1990	AMY3B,AMY2A,AMY3C,AMY3E,AMY3D,AMY1B,AMY3A,AMY1C,AMY1A	Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A
21325	10691130	Huang,X., Wang,X., Jia,H., Feng,S., Cao,K. and Sun,C.	Isolation and mapping of rFUS6, a rice orthologue of Arabidopsis thaliana FUS6.	DNA Res.	6(6)	375-379	1999		
21326	10480383	Huq,E. and Hodges,T.K.	An anaerobically inducible early (aie) gene family from rice.	Plant Mol. Biol.	40(4)	591-601	1999	_,_,_	aie1a,aie1b,aie2
21327	9008398	Huq,E., Hirayama,L., Hossain,M.A. and Hodges,T.K.	Characterization of a cDNA Encoding a Polyubiquitin Gene in Rice (Accession No. U37687)(PGR97-004)	Plant Physiol.	113(1)	305	1997	RUBQ2	rubq2, rub1, Ubq1, Rubq1, UBQ10 
21328	7480354	Huq,M.E., Hossain,M.A. and Hodges,T.K.	Cloning and sequencing of a cDNA encoding pyruvate decarboxylase 2 gene (Accession No. U27350) from rice (PGR95-072)	Plant Physiol.	109(2)	722	1995	PDC2	pdc2*, pdc2
21329	9106509	Igarashi,Y., Yoshiba,Y., Sanada,Y., Yamaguchi-Shinozaki,K., Wada,K. and Shinozaki,K.	Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.	Plant Mol. Biol.	33(5)	857-865	1997	P5CS	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
21330	10945345	Igarashi,Y., Yoshiba,Y., Takeshita,T., Nomura,S., Otomo,J., Yamaguchi-Shinozaki,K. and Shinozaki,K.	Molecular cloning and characterization of a cDNA encoding proline transporter in rice.	Plant Cell Physiol.	41(6)	750-756	2000	P5CS,_	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsProT, ProT, OsProT2, ProT2
21331	14530400	Ilic,K., SanMiguel,P.J. and Bennetzen,J.L.	A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.	Proc. Natl. Acad. Sci. U.S.A.	100(21)	12265-12270	2003	CYCH;1,ADH1	Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,Adh1, Adh1/2, adh1/adh2, OsADH1
21332	15310079	Imai,R., Ali,A., Pramanik,H.R., Nakaminami,K., Sentoku,N. and Kato,H.	A distinctive class of spermidine synthase is involved in chilling response in rice.	J. Plant Physiol.	161(7)	883-886	2004	SPDS2,SPDS1	OsSPDS2, OsSPMS1, SPMS1,OsSPDS1, OsSPDS, SPDS
21333	9278162	Imaizumi,N., Ku,M.S., Ishihara,K., Samejima,M., Kaneko,S. and Matsuoka,M.	Characterization of the gene for pyruvate,orthophosphate dikinase from rice, a C3 plant, and a comparison of structure and expression between C3 and C4 genes for this protein.	Plant Mol. Biol.	34(5)	701-716	1997	FLO4	FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD
21334	15829602	Inukai,Y., Sakamoto,T., Ueguchi-Tanaka,M., Shibata,Y., Gomi,K., Umemura,I., Hasegawa,Y., Ashikari,M., Kitano,H. and Matsuoka,M.	Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling.	Plant Cell	17(5)	1387-1396	2005	CRL1,RA2,CRL1L1,IAA3,CRL1L2,CRL1L3,ARF1,IAA4	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,ra2, Osra2, OsCrll4, CRL1L4, OsRA2,OsCrll1, OsLBD3-1, LBD3-1,OsIAA3,OsCrll2, Crll2,OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2,OsARF1, arf1, OsARF23, ARF23,OsIAA4
21335	11470540	Ishibashi,T., Kimura,S., Furukawa,T., Hatanaka,M., Hashimoto,J. and Sakaguchi,K.	Two types of replication protein A 70 kDa subunit in rice, Oryza sativa: molecular cloning, characterization, and cellular &amp; tissue distribution.	Gene	272(1-2)	335-343	2001	RPA1A,RPA1,_	OsRPA70a, OsRPA1a, RPA1a,OsRPA1, OsRPA70b, RPA70b,OsRPA32, RPA32, RPA2A 
21336	12711392	Ishibashi,T., Kimura,S., Yamamoto,T., Furukawa,T., Takata,K., Uchiyama,Y., Hashimoto,J. and Sakaguchi,K.	Rice UV-damaged DNA binding protein homologues are most abundant in proliferating tissues.	Gene	308	79-87	2003	_,_	UV-DDB1, OsUV-DDB1, OsUV-DDB,OsWD40-2, UV-DDB2, OsUV-DDB2 
21337	15978034	Ishibashi,T., Koga,A., Yamamoto,T., Uchiyama,Y., Mori,Y., Hashimoto,J., Kimura,S. and Sakaguchi,K.	Two types of replication protein A in seed plants.	FEBS J.	272(13)	3270-3281	2005	RPA1A,_,_,RPA1	OsRPA70a, OsRPA1a, RPA1a,OsRPA14, RPA14, RPA3,OsRPA32, RPA32, RPA2A ,OsRPA1, OsRPA70b, RPA70b
21338	16140596	Ishibashi,T., Isogai,M., Kiyohara,H., Hosaka,M., Chiku,H., Koga,A., Yamamoto,T., Uchiyama,Y., Mori,Y., Hashimoto,J., Ausio,J., Kimura,S. and Sakaguchi,K.	Higher plant RecA-like protein is homologous to RadA.	DNA Repair (Amst.)	5(1)	80-88	2006	RADA	OsRADA, OsRadA, OsLonP2, LONP2
21339	7767602	Ishikawa,A., Tsubouchi,H., Iwasaki,Y. and Asahi,T.	Molecular cloning and characterization of a cDNA for the alpha subunit of a G protein from rice.	Plant Cell Physiol.	36(2)	353-359	1995	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
21340	8665097	Ishikawa,A., Iwasaki,Y. and Asahi,T.	Molecular cloning and characterization of a cDNA for the beta subunit of a G protein from rice.	Plant Cell Physiol.	37(2)	223-228	1996	RGB1	OsWD40-80, RGbeta1
21341	16412081	Ishimaru,Y., Suzuki,M., Tsukamoto,T., Suzuki,K., Nakazono,M., Kobayashi,T., Wada,Y., Watanabe,S., Matsuhashi,S., Takahashi,M., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Rice plants take up iron as an Fe3+-phytosiderophore and as Fe2+	Plant J.	45(3)	335-346	2006	ZIP2,ZIP3,ZIP4,ZIP5,ZIP7,ZIP6,IRT2,IRT1,FRO2,_,ZIP1	OsZIP2, OsZIP11, ZIP11 ,OsZIP3,OsZIP4,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsZIP7,OsZIP6,OsIRT2, OsIRT1,OsIRT1,OsFRO2,OsFRO1,OsZIP1
21342	7766047	Ishiwatari,Y., Honda,C., Kawashima,I., Nakamura,S., Hirano,H., Mori,S., Fujiwara,T., Hayashi,H. and Chino,M.	Thioredoxin h is one of the major proteins in rice phloem sap.	Planta.	195(3)	456-463	1995	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1
21343	15574840	Ishiyama,K., Inoue,E., Tabuchi,M., Yamaya,T. and Takahashi,H.	Biochemical background and compartmentalized functions of cytosolic glutamine synthetase for active ammonium assimilation in rice roots.	Plant Cell Physiol.	45(11)	1640-1647	2004	GLN1;1,GLN1;2	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
21344	1368754	Ito,H., Hiraoka,N., Ohbayashi,A. and Ohashi,Y.	Purification and characterization of rice peroxidases.	Agric. Biol. Chem.	55(10)	2445-2454	1991	_,_,_,_	RP-6,RP-7,RP-I,RP-2 or RP-4, prx13
21346	7659758	Ito,H., Matsui,H., Honma,M. and Ohashi,Y.	Genomic nucleotide sequence of a rice peroxidase gene. (DDBJ 49551)(PGR95-026)	Plant Physiol.	108(4)	1747-1749	1995	POXN	poxN, prx38, prxRPN, RPN, poxN/PRX38
21347	10773343	Ito,H., Hiraga,S., Tsugawa,H., Matsui,H., Honma,M., Otsuki,Y., Murakami,T. and Ohashi,Y.	Xylem-specific expression of wound-inducible rice peroxidase genes in transgenic plants.	Plant Sci.	155(1)	85-100	2000	POXA,POXN	poxA, prx126, prxRPA, RPA,poxN, prx38, prxRPN, RPN, poxN/PRX38
21348	11846882	Ito,M., Sentoku,N., Nishimura,A., Hong,S.K., Sato,Y. and Matsuoka,M.	Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis.	Plant J.	29(4)	497-507	2002	ROC1	Roc1(t), GL2-1
21349	9426242	Ito,Y., Saisho,D., Nakazono,M., Tsutsumi,N. and Hirai,A.	Transcript levels of tandem-arranged alternative oxidase genes in rice are increased by low temperature.	Gene	203(2)	121-129	1997	AOX1A,AOX1B	Ao1-1, AOX1a, OsAOX1a, AOX 1a,AOX1b, OsAOX1b
21350	10095070	Ito,Y., Eiguchi,M. and Kurata,N.	Expression of novel homeobox genes in early embryogenesis in rice.	Biochim. Biophys. Acta	1444(3)	445-450	1999	OSH45	OSH42, OSH44, H45
21351	12034492	Ito,Y., Hirochika,H. and Kurata,N.	Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice.	Gene	288(1-2)	41-47	2002	HOS59,HOS66,HOS58	,HB365, KNAT7,
21352	15094187	Ito,Y., Chujo,A., Eiguchi,M. and Kurata,N.	Radial axis differentiation in a globular embryo is marked by HAZ1, a PHD-finger homeobox gene of rice.	Gene	331	9-15	2004	_	HAZ1
21353	16081169	Ito,Y., Takaya,K. and Kurata,N.	Expression of SERK family receptor-like protein kinase genes in rice.	Biochim. Biophys. Acta	1730(3)	253-258	2005	_,_,_	OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,ORK1, OsRLCK246, RLCK246,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2
21354	11438692	Itoh,H., Ueguchi-Tanaka,M., Sentoku,N., Kitano,H., Matsuoka,M. and Kobayashi,M.	Cloning and functional analysis of two gibberellin 3 beta -hydroxylase genes that are differently expressed during the growth of rice.	Proc. Natl. Acad. Sci. U.S.A.	98(15)	8909-8914	2001	D18,GA3OX1	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA3ox1, GA3ox1, OsGA3OX1
21355	7682174	Iwabuchi,M., Kyozuka,J. and Shimamoto,K.	Processing followed by complete editing of an altered mitochondrial atp6 RNA restores fertility of cytoplasmic male sterile rice.	EMBO J.	12(4)	1437-1446	1993	_,AATP6	atp6, N-atp6, B-ATP6, B-atp6, atp6-1,A-atp6
21356	12451175	Iwai,H., Masaoka,N., Ishii,T. and Satoh,S.	A pectin glucuronyltransferase gene is essential for intercellular attachment in the plant meristem.	Proc. Natl. Acad. Sci. U.S.A.	99(25)	16319-16324	2002	_	OsGUT1, GUT1
21357	12059099	Iwai,T., Kaku,H., Honkura,R., Nakamura,S., Ochiai,H., Sasaki,T. and Ohashi,Y.	Enhanced resistance to seed-transmitted bacterial diseases in transgenic rice plants overproducing an oat cell-wall-bound thionin.	Mol. Plant Microbe Interact.	15(6)	515-521	2002	_	OsTHI9, THI9, Osthi1, thi1
21358		Iwamoto,M., Maekawa,M., Saito,A., Higo,H. and Higo,K.	Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots	Theor. Appl. Genet.	97(1-2)	9-19	1998	CATA,CATB,CATC	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3
21359		Iwamoto,M., Nagashima,H., Nagamine,T., Higo,H. and Higo,K.	p-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species	Theor. Appl. Genet.	98(6-7)	853-861	1999	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
21360	9055819	Iwasaki,T., Saito,Y., Harada,E., Kasai,M., Shoji,K., Miyao,M. and Yamamoto,N.	Cloning of cDNA encoding the rice 22 kDa protein of Photosystem II (PSII-S) and analysis of light-induced expression of the gene.	Gene	185(2)	223-229	1997	_,ELIP,PSBS2	ASCAB9-A, CP26, Lhcb5,,PsbS, OsPsbS2
21361	9654145	Iwasaki,T., Matsuki,R., Shoji,K., Sanmiya,K., Miyao,M. and Yamamoto,N.	A novel importin alpha from rice, a component involved in the process of nuclear protein transport.	FEBS Lett.	428(3)	259-262	1998	IMPA2,IMPA1A,IMPA1B	,rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a,
21362	7757340	Iwasaki,Y., Komano,M., Ishikawa,A., Sasaki,T. and Asahi,T.	Molecular cloning and characterization of cDNA for a rice protein that contains seven repetitive segments of the Trp-Asp forty-amino-acid repeat (WD-40 repeat).	Plant Cell Physiol.	36(3)	505-510	1995	RACK1	RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A
21363	15597740	Iyer,A.S. and McCouch,S.R.	The rice bacterial blight resistance gene xa5 encodes a novel form of disease resistance.	Mol. Plant Microbe Interact.	17(12)	1348-1354	2004	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
21364	7919992	Izawa,T., Foster,R., Nakajima,M., Shimamoto,K. and Chua,N.H.	The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.	Plant Cell	6(9)	1277-1287	1994	RITA1	OsbZIP20, RITA-1, RISBZ3
21365	1376283	Izumi,H., Adachi,T., Fujii,N., Matsuda,T., Nakamura,R., Tanaka,K., Urisu,A. and Kurosawa,Y.	Nucleotide sequence of a cDNA clone encoding a major allergenic protein in rice seeds. Homology of the deduced amino acid sequence with members of alpha-amylase/trypsin inhibitor family.	FEBS Lett.	302(3)	213-216	1992	_	RA17, RAP, RAG1, OsEnS-97
21366	15516498	Jan,A., Yang,G., Nakamura,H., Ichikawa,H., Kitano,H., Matsuoka,M., Matsumoto,H. and Komatsu,S.	Characterization of a xyloglucan endotransglucosylase gene that is up-regulated by gibberellin in rice.	Plant Physiol.	136(3)	3670-3681	2004	XTH17	OsXTH17, OsXTH8
21367	12177461	Jang,I.C., Choi,W.B., Lee,K.H., Song,S.I., Nahm,B.H. and Kim,J.K.	High-Level and Ubiquitous Expression of the Rice Cytochrome c Gene OsCc1 and Its Promoter Activity in Transgenic Plants Provides a Useful Promoter for Transgenesis of Monocots.	Plant Physiol.	129(4)	1473-1481	2002	CC1	OsCc1, OsCc-1
21368	14750524	Jang,S., Lee,B., Kim,C., Kim,S.-J., Yim,J., Han,J.-J., Lee,S., Kim,S.-R. and An,G.	The OsFOR1 gene encodes a polygalacturonase-inhibiting protein that regulates floral organ number in rice	Plant Mol. Biol.	53(3)	357-369	2003	FOR1	OsFOR1, Osfor1
21369	10080707	Jeon,J.S., Chung,Y.Y., Lee,S., Yi,G.H., Oh,B.G. and An,G.	Isolation and characterization of an anther-specific gene, RA8, from rice (Oryza sativa L.).	Plant Mol. Biol.	39(1)	35-44	1999	RA8	OsBURP15, BURP15
21370	10852934	Jeon,J.S., Jang,S., Lee,S., Nam,J., Kim,C., Lee,S.H., Chung,Y.Y., Kim,S.R., Lee,Y.H., Cho,Y.G. and An,G.	leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower development.	Plant Cell	12(6)	871-884	2000	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
21371	15983871	Ji,X., Van den Ende,W., Van Laere,A., Cheng,S. and Bennett,J.	Structure, evolution, and expression of the two invertase gene families of rice.	J. Mol. Evol.	60(5)	615-634	2005	_,CIN1,CIN9,CIN6,_,NIN1,NIN3,NIN4,NIN5,NIN7,NIN8,_,_,CIN4,CIN5,_,NIN2,NIN6,GIF1	OSINV1, OsINV1, INV1, OsCIN7, OsCIN8,OSCIN1, OsCIN1,OsCIN9,OsCIN6, OsCIN7, CIN7,OSINV3, OsINV3, INV3, OsVIN2, VIN2, VINV,OsNIN1,OsNIN3,OsNIN4,OsNIN5,OsNIN7,OsNIN8,OSINV2, OsINV2, OsVIN1,OSINV4, OsINV4, INV4, OsCIN3,OsCIN4,OsCIN5, OsCIN6,OsCIN4, CIN4, OsCIN5, CIN5,OsNIN2, CytINV, OsCytINV,OsNIN6,gif1, CIN2, OsCIN2, OsGIF1
21372	12475618	Jiang,H., Dian,W., Liu,F. and Wu,P.	Isolation and characterization of two fructokinase cDNA clones from rice.	Phytochemistry	62(1)	47-52	2003	_,_	OsFKI, OsFK2,OsFKII, OsFK1, FKII, FK1
21373	15849305	Jiang,H., Wang,S., Dang,L., Wang,S., Chen,H., Wu,Y., Jiang,X. and Wu,P.	A Novel Short-Root Gene Encodes a Glucosamine-6-Phosphate Acetyltransferase Required for Maintaining Normal Root Cell Shape in Rice.	Plant Physiol.	138(1)	232-242	2005	GNA1	OsGNA1
21374	15169941	Jiang,S. and Ramachandran,S.	Identification and Molecular Characterization of Myosin Gene Family in Oryza sativa Genome.	Plant Cell Physiol.	45(5)	590-599	2004	_,_,_,_,_,_,_,_,_,_,_,_,_,_	OSMYOXIB, OsMyoXIB,OSMYOXIH, OsMyoXIH,OSMYOXIC, OsMyoXIC,OSMYOXID, OsMyoXID,OSMYOXIF, OsMyoXIF,OSMYOXIG, OsMyoXIG,OsMyoXIA,OSMYOXI-I, OsMyoXI-I,OSMYOXIJ, OsMyoXIJ,OSMYOVIIIB, OsMyoVIIIB,OSMYOXIL, OsMyoXIL,OSMYOXIK, OsMyoXIK,OsMyoVIIIA, OsMyoVIIIA-1, OsMyoVIIIA-2,OsMyoXIE, OsMyoXIE-1, OsMyoXIE-2, OsMyoXIE-3
21376		Jiang,S.Y., Chen,Q.F. and Fang,X.J.	Identification of differentially Expressed Genes in Photo-period Sensitive Genic Male Sterile Rice by Randomly Amplified cDNAs Using RAPD Primers	Chin. Sci. Bull.	44(4)	348-351	1999	_	RPG43
21377		Jiang,S.Y., Chen,Q.F. and Fang,X.J.	Identifying and mapping cDNA fragments related to rice photoperiod sensitive genic male sterility	Chin. Sci. Bull.	45(6)	536-540	2000	_	RPG43
21378	15952069	Jiang,S.Y., Cai,M. and Ramachandran,S.	The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein.	Plant Mol. Biol.	57(6)	835-853	2005	OSNOP	Osnop, nop
21379	9517002	Joshee,N., Kisaka,H. and Kitagawa,Y.	Isolation and characterization of a water stress-specific genomic gene, pwsi 18, from rice.	Plant Cell Physiol.	39(1)	64-72	1998	WSI18	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18
21380	15047876	Jun,S.H., Han,M.J., Lee,S., Seo,Y.S., Kim,W.T. and An,G.	OsEIN2 is a Positive Component in Ethylene Signaling in Rice.	Plant Cell Physiol.	45(3)	281-289	2004	EIN2	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
21381	16141453	Jung,K.H., Han,M.J., Lee,Y.S., Kim,Y.W., Hwang,I., Kim,M.J., Kim,Y.K., Nahm,B.H. and An,G.	Rice undeveloped tapetum1 is a major regulator of early tapetum development.	Plant Cell	17(10)	2705-2722	2005	UDT1	Udt1, bHLH164, OsUDT1, OsbHLH164 
21383	11527396	Jwa,N.S., G., Rakwal,R., Park,C.H. and V.	Molecular cloning and characterization of a novel Jasmonate inducible pathogenesis-related class 10 protein gene, JIOsPR10, from rice (Oryza sativa L.) seedling leaves.	Biochem. Biophys. Res. Commun.	286(5)	973-983	2001	JIOSPR10	JIOsPR10, OsPR10, PR10 
21384	8978691	Kadowaki,K., Kubo,N., Ozawa,K. and Hirai,A.	Targeting presequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals.	EMBO J.	15(23)	6652-6661	1996	_,RPS11,_,RPS11.P	s11-2,rps11, s11-1,coxVb, COX5b,rps11.p, pseudo-rps11 
21385	9057336	Kaminaka,H., Morita,S., Yokoi,H., Masumura,T. and Tanaka,K.	Molecular cloning and characterization of a cDNA for plastidic copper/zinc-superoxide dismutase in rice (Oryza sativa L.).	Plant Cell Physiol.	38(1)	65-69	1997	SOD4	OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3
21387	10050312	Kaminaka,H., Morita,S., Nakajima,M., Masumura,T. and Tanaka,K.	Gene cloning and expression of cytosolic glutathione reductase in rice (Oryza sativa L.).	Plant Cell Physiol.	39(12)	1269-1280	1998	_	OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2
21388	10192910	Kaminaka,H., Morita,S., Tokumoto,M., Yokoyama,H., Masumura,T. and Tanaka,K.	Molecular cloning and characterization of a cDNA for an iron-superoxide dismutase in rice (Oryza sativa L.).	Biosci. Biotechnol. Biochem.	63(2)	302-308	1999	SODB	SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2
21390	11118226	Kaminska,M., Deniziak,M., Kerjan,P., Barciszewski,J. and Mirande,M.	A recurrent general RNA binding domain appended to plant methionyl-tRNA synthetase acts as a cis-acting cofactor for aminoacylation.	EMBO J.	19(24)	6908-6917	2000	_	MetRS, MRS
21391	7816019	Kamisugi,Y., Nakayama,S., Nakajima,R., Ohtsubo,H., Ohtsubo,E. and Fukui,K.	Physical mapping of the 5S ribosomal RNA genes on rice chromosome 11.	Mol. Gen. Genet.	245(2)	133-138	1994	R5S1	R5s1*, r5s, R5s1
21392	12974810	Kamiya,N., Itoh,J., Morikami,A., Nagato,Y. and Matsuoka,M.	The SCARECROW gene's role in asymmetric cell divisions in rice plants.	Plant J.	36(1)	45-54	2003	SHR1,SCR	OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51
21393	14561741	Kamiya,T. and Maeshima,M.	Residues in internal repeats of the rice cation/h+ exchanger are involved in the transport and selection of cations.	J. Biol. Chem.	279(1)	812-819	2004	CAX1A	OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a
21394	16087344	Kanegae,H., Miyoshi,K., Hirose,T., Tsuchimoto,S., Mori,M., Nagato,Y. and Takano,M.	Expressions of rice sucrose non-fermenting-1 related protein kinase 1 genes are differently regulated during the caryopsis development.	Plant Physiol. Biochem.	43(7)	669-679	2005	OSK1,OSK3,OSK4	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35 ,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b
21395	9085264	Kang,H.G. and An,G.	Isolation and characterization of a rice MADS box gene belonging to the AGL2 gene family.	Mol. Cells	7(1)	45-51	1997	MADS5	OsMADS5, FDRMADS2
21396	7579155	Kang,H.G., Noh,Y.S., Chung,Y.Y., Costa,M.A., An,K. and An,G.	Phenotypic alterations of petal and sepal by ectopic expression of a rice MADS box gene in tobacco.	Plant Mol. Biol.	29(1)	1-10	1995	RAG	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1
21397	9339904	Kang,H.G., Jang,S., Chung,J.E., Cho,Y.G. and An,G.	Characterization of two rice MADS box genes that control flowering time.	Mol. Cells	7(4)	559-566	1997	MADS24,MADS7	OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
21398	7858231	Kang,M.S., Choi,Y.J., Kim,M.C., Lim,C.O., Hwang,I. and Cho,M.J.	Isolation and characterization of two beta-tubulin cDNA clones from rice.	Plant Mol. Biol.	26(6)	1975-1979	1994	TUB3,TUB4	OsTUB3, TUBB3, RTUB-2,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
21399	9414571	Kanjo,N. and Inokuchi,H.	Nucleotide sequence of a cDNA clone encoding ferrochelatase from rice (Accession No.AB007120) (PGR97-175)	Plant Physiol.	115(4)	1729-1731	1997		
21401	15159631	Kanno,T., Kasai,K., Ikejiri-Kanno,Y., Wakasa,K. and Tozawa,Y.	In vitro reconstitution of rice anthranilate synthase: distinct functional properties of the alpha subunits OASA1 and OASA2.	Plant Mol. Biol.	54(1)	11-23	2004	ASA2,ASB2,ASA1,ASB1	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2,OASB2,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,OASB1, OsASbeta1, ASbeta1
21402	11972021	Kaplinsky,N.J., Braun,D.M., Penterman,J., Goff,S.A. and Freeling,M.	Utility and distribution of conserved noncoding sequences in the grasses.	Proc. Natl. Acad. Sci. U.S.A.	99(9)	6147-6151	2002	_	lg1
21403	12434003	Kasai,K., Usami,S., Yamada,T., Endo,Y., Ochi,K. and Tozawa,Y.	A RelA-SpoT homolog (Cr-RSH) identified in Chlamydomonas reinhardtii generates stringent factor in vivo and localizes to chloroplasts in vitro.	Nucleic Acids Res.	30(22)	4985-4992	2002	_	OsRALyase1
21405	11328648	Kato,A., Fujita,S. and Komeda,Y.	Identification and characterization of the gene encoding the mitochondrial elongation factor G in rice.	DNA Seq.	11(5)	395-404	2000	_	mEF-G
21406	11913775	Kato,A., Fujita,S. and Komeda,Y.	Identification and characterization of two genes encoding the eukaryotic initiation factor 4A in rice.	DNA Seq.	12(5-6)	295-303	2001	EIF4A2,EIF4A1	eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21407	11697144	Kato,A., Nishi,R. and Ozaki,M.	Isolation and characterization of two genes encoding ubiquitin fused to a ribosomal protein of 53 amino acids in rice.	DNA Seq.	12(1)	53-58	2001	_,_,_	ZIURP1, Ub-CEP52-1,Ub-CEP52-2,S27a
21408	15078334	Kato,C., Mizutani,T., Tamaki,H., Kumagai,H., Kamiya,T., Hirobe,A., Fujisawa,Y., Kato,H. and Iwasaki,Y.	Characterization of heterotrimeric G protein complexes in rice plasma membrane	Plant J.	38(2)	320-331	2004	_,RGG2,RGB1,D1	RGG1,,OsWD40-80, RGbeta1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
21409	8706734	Kato,H. and Minamikawa,T.	Identification and characterization of a rice cysteine endopeptidase that digests glutelin.	Eur. J. Biochem.	239(2)	310-316	1996	_,_	REP-1, OsSAG12-1, SAG12-1, OsEnS-21,OsVPE3, VPE3, REP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2
21410	10394640	Kato,H., Shintani,A. and Minamikawa,T.	The structure and organization of two cysteine endopeptidase genes from rice.	Plant Cell Physiol.	40(4)	462-467	1999		
21412	16028112	Kawabe,A., Matsunaga,S., Nakagawa,K., Kurihara,D., Yoneda,A., Hasezawa,S., Uchiyama,S. and Fukui,K.	Characterization of plant Aurora kinases during mitosis.	Plant Mol. Biol.	58(1)	1-13	2005	_,_	OsAUR1, AUR1,OsAUR2, AUR2
21413	1302636	Kawai,M., Kidou,S., Kato,A. and Uchimiya,H.	Molecular characterization of cDNA encoding for adenylate kinase of rice (Oryza sativa L.).	Plant J.	2(6)	845-854	1992	ADKA,ADKB	Adk-a,Adk-b
21414	10618494	Kawai,M., Pan,L., Reed,J.C. and Uchimiya,H.	Evolutionally conserved plant homologue of the Bax inhibitor-1 (BI-1) gene capable of suppressing Bax-induced cell death in yeast(1).	FEBS Lett.	464(3)	143-147	1999		
21415	8325505	Kawasaki,T., Hayashida,N., Baba,T., Shinozaki,K. and Shimada,H.	The gene encoding a calcium-dependent protein kinase located near the sbe1 gene encoding starch branching enzyme I is specifically expressed in developing rice seeds.	Gene	129(2)	183-189	1993	SPK	CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23
21416	8455548	Kawasaki,T., Mizuno,K., Baba,T. and Shimada,H.	Molecular analysis of the gene encoding a rice starch branching enzyme.	Mol. Gen. Genet.	237(1-2)	10-16	1993	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
21417	10485927	Kawasaki,T., Henmi,K., Ono,E., Hatakeyama,S., Iwano,M., Satoh,H. and Shimamoto,K.	The small GTP-binding protein rac is a regulator of cell death in plants.	Proc. Natl. Acad. Sci. U.S.A.	96(19)	10922-10926	1999	RAC1,RAC3,RAC2	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRac3,OsRAC2, OsRac2
21418	2717416	Kay,S.A., Keith,B., Shinozaki,K. and Chua,N.H.	The sequence of the rice phytochrome gene.	Nucleic Acids Res.	17(7)	2865-2866	1989	PHYA	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21419	12782297	Kazama,T. and Toriyama,K.	A pentatricopeptide repeat-containing gene that promotes the processing of aberrant atp6 RNA of cytoplasmic male-sterile rice.	FEBS Lett.	544(1-3)	99-102	2003	RF1	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
21420	9490748	Keller,T., Damude,H.G., Werner,D., Doerner,P., Dixon,R.A. and Lamb,C.	A plant homolog of the neutrophil NADPH oxidase gp91phox subunit gene encodes a plasma membrane protein with Ca2+ binding motifs.	Plant Cell	10(2)	255-266	1998	RBOHA	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2
21421	1646373	Kemmerer,E.C., Lei,M. and Wu,R.	Isolation and molecular evolutionary analysis of a cytochrome c gene from Oryza sativa (rice)	Mol. Biol. Evol.	8(2)	212-226	1991	CC1	OsCc1, OsCc-1
21422	9484469	Kidou,S. and Ejiri,S.	Isolation, characterization and mRNA expression of four cDNAs encoding translation elongation factor 1A from rice (Oryza sativa L.).	Plant Mol. Biol.	36(1)	137-148	1998	RFA4,RFA3,RFA1,RFA2	rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,rfa3*, REFA3, refa3,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna
21423	8405471	Kidou,S., Anai,T., Umeda,M., Aotsuka,S., Tsuge,T., Kato,A. and Uchimiya,H.	Molecular structure of ras-related small GTP-binding protein genes of rice plants and GTPase activities of gene products in Escherichia coli.	FEBS Lett.	332(3)	282-286	1993	GF14F,_	GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,OsRab11D1, OsRab11, Rab11, ric2
21424	7678761	Kidou,S., Umeda,M., Kato,A. and Uchimiya,H.	Isolation and characterization of a rice cDNA similar to the bovine brain-specific 14-3-3 protein gene.	Plant Mol. Biol.	21(1)	191-194	1993	GF14F	GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f
21425	8493114	Kidou,S., Umeda,M., Kato,A. and Uchimiya,H.	Plant cDNA homologue to rat insulinoma gene encoding ribosomal protein S15.	Nucleic Acids Res.	21(8)	2013	1993	_	rig, RPS15, OsRPS15
21426	7703506	Kidou,S., Umeda,M. and Uchimiya,H.	Nucleotide sequence of rice (oryza sativa L.) cDNA homologous to cdc2 gene.	DNA Seq.	5(2)	125-129	1994	CDKB2;1 	Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 
21427	7510136	Kidou,S., Umeda,M., Tsuge,T., Kato,A. and Uchimiya,H.	Isolation and characterization of a rice cDNA similar to the S-phase-specific cyc07 gene.	Plant Mol. Biol.	24(3)	545-547	1994	_	cyc07, T151
21428	9742959	Kidou,S., Tsukamoto,S., Kobayashi,S. and Ejiri,S.	Isolation and characterization of a rice cDNA encoding the gamma-subunit of translation elongation factor 1B (eEF1Bgamma).	FEBS Lett.	434(3)	382-386	1998	EEF1BG	eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1
21429	10080717	Kikuchi,H., Hirose,S., Toki,S., Akama,K. and Takaiwa,F.	Molecular characterization of a gene for alanine aminotransferase from rice (Oryza sativa).	Plant Mol. Biol.	39(1)	149-159	1999	ALAAT	alaAT, ALT-1, OsAlaAT1, AlaAT1
21430	10660065	Kikuchi,K., Ueguchi-Tanaka,M., Yoshida,K.T., Nagato,Y., Matsusoka,M. and Hirano,H.Y.	Molecular analysis of the NAC gene family in rice.	Mol. Gen. Genet.	262(6)	1047-1051	2000	NAC6,NAC8,NAC4,NAC7,NAC3,NAC5,NAC1,NAC2	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2
21431	12520303	Kikuchi,K., Terauchi,K., Wada,M. and Hirano,H.Y.	The plant MITE mPing is mobilized in anther culture.	Nature	421(6919)	167-170	2003	MPING,PING,_,_	mPing,Ping,A,B
21432	3481021	Kikuchi,S., Takaiwa,F. and Oono,K.	Variable copy number DNA sequences in rice.	Mol. Gen. Genet.	210(3)	373-380	1987	RPS7,RPS7,3'RPS12,RPS12	rps7,rps7,3'rps12, 3'-rps12, rps12,rps12
21433	9617819	Kim,C.Y., Gal,S.W., Choe,M.S., Jeong,S.Y., Lee,S.I., Cheong,Y.H., Lee,S.H., Choi,Y.J., Han,C.D., Kang,K.Y. and Cho,M.J.	A new class II rice chitinase, Rcht2, whose induction by fungal elicitor is abolished by protein phosphatase 1 and 2A inhibitor.	Plant Mol. Biol.	37(3)	523-534	1998	CHT8	Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14
21434	7610191	Kim,H.U., Yun,C.H., Cho,W.S., Kang,S.K. and Chung,T.Y.	Nucleotide sequence of rice cDNA that encodes a ubiquitin protein and a 79-amino acid protein.	Plant Physiol.	108(2)	865	1995	_	S27a
21435	1731997	Kim,J.K. and Wu,R.	Nucleotide sequence of a high-pI rice (Oryza sativa) -amylase gene.	Plant Mol. Biol.	18(2)	399-402	1992	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21436	8219074	Kim,J.K. and Wu,R.	A rice (Oryza sativa L.) cDNA encodes a protein sequence homologous to the eukaryotic ribosomal 5S RNA-binding protein.	Plant Mol. Biol.	23(2)	409-413	1993	RPL5	rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p
21437	1375314	Kim,J.K., Cao,J. and Wu,R.	Regulation and interaction of multiple protein factors with the proximal promoter regions of a rice high pI alpha-amylase gene.	Mol. Gen. Genet.	232(3)	383-393	1992	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
21438	14682618	Kim,K.N., Lee,J.S., Han,H., Choi,S.A., Go,S.J. and Yoon,I.S.	Isolation and characterization of a novel rice Ca2+-regulated protein kinase gene involved in responses to diverse signals including cold, light, cytokinins, sugars and salts.	Plant Mol. Biol.	52(6)	1191-1202	2003	CK1	OsCK1, CIPK31, OsCIPK31, Os-CIPK3
21439	11919636	Kim,M.C., Panstruga,R., Elliott,C., Muller,J., Devoto,A., Yoon,H.W., Park,H.C., Cho,M.J. and Schulze-Lefert,P.	Calmodulin interacts with MLO protein to regulate defence against mildew in barley.	Nature	416(6879)	447-451	2002	MLO_	OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3
21440	12423882	Kim,W.D., Kobayashi,O., Kaneko,S., Sakakibara,Y., Park,G.G., Kusakabe,I., Tanaka,H. and Kobayashi,H.	alpha-Galactosidase from cultured rice (Oryza sativa L. var. Nipponbare) cells.	Phytochemistry	61(6)	621-630	2002	_	alphaGa1, alpha-Gal I
21441	3360138	Kim,W.T. and Okita,T.W.	Nucleotide and primary sequence of a major rice prolamine.	FEBS Lett.	231(2)	308-310	1988	_	
21442	16666363	Kim,W.T. and Okita,T.W.	Structure, expression, and heterogeneity of the rice seed prolamines	Plant Physiol.	88(3)	649-655	1988	PROL	Prol*, Pro6
21443	10592042	Kim,W.Y., Kim,C.Y., Cheong,N.E., Choi,Y.O., Lee,K.O., Lee,S.H., Park,J.B., Nakano,A., Bahk,J.D., Cho,M.J. and Lee,S.Y.	Characterization of two fungal-elicitor-induced rice cDNAs encoding functional homologues of the rab-specific GDP-dissociation inhibitor.	Planta.	210(1)	143-149	1999	_,_	OsGDI2,OsGDI1, GDI1
21444	7765038	Kim,Y., Baek,J., Park,H., Choi,Y. and Kim,S.	Isolation and characterization of the cDNA clones encoding class I chitinase in suspension cultures of rice cell	Biosci. Biotechnol. Biochem.	58(6)	1164-1166	1994	CHT1,CHT3	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11
21447		Kim,Y.H., Lee,M.C., Yun,D.W. and Eun,M.Y.	Nucleotide Sequences of cDNAs Encoding Three Types of Metaolothionein(MT)-like Protein (Accession Nos. AF017366, U77284, AF017365, AF009959 and AF001396) from Oryza sativa L. (PGR99-019)	Plant Physiol.	119(2)	805	1999	MTI2B,MT2B,MTI3A,MTI3B,MTI1A	OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1
21448	7991693	Kim,Y.M., Kim,J.K. and Hwang,Y.S.	Isolation and characterization of a rice full-length cDNA clone encoding a polyubiquitin.	Plant Physiol.	106(2)	791-792	1994	RUBQ2	rubq2, rub1, Ubq1, Rubq1, UBQ10 
21449	10996242	Kimura,S., Ishibashi,T., Hatanaka,M., Sakakibara,Y., Hashimoto,J. and Sakaguchi,K.	Molecular cloning and characterization of a plant homologue of the origin recognition complex 1 (ORC1).	Plant Sci.	158(1-2)	33-39	2000	ORC1	OsORC1
21450	10798612	Kimura,S., Ueda,T., Hatanaka,M., Takenouchi,M., Hashimoto,J. and Sakaguchi,K.	Plant homologue of flap endonuclease-1: molecular cloning, characterization, and evidence of expression in meristematic tissues.	Plant Mol. Biol.	42(3)	415-427	2000	FEN1	OsFEN1, OsFEN-1a, FEN-1
21451	11917019	Kimura,S., Uchiyama,Y., Kasai,N., Saotome,A., Ueda,T., Ando,T., Ishibashi,T., Namekawa,S., Oshige,M., Furukawa,T., Yamamoto,T., Hashimoto,J. and Sakaguchi,K.	A novel DNA polymerase homologous to Escherichia coli DNA polymerase I from a higher plant, rice (Oryza sativa L.).	Nucleic Acids Res.	30(7)	1585-1592	2002	_	PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp
21452	14527718	Kimura,S., Furukawa,T., Kasai,N., Mori,Y., Kitamoto,H.K., Sugawara,F., Hashimoto,J. and Sakaguchi,K.	Functional characterization of two flap endonuclease-1 homologues in rice	Gene	314	63-71	2003	FEN1B,FEN1	OsFEN-1b,OsFEN1, OsFEN-1a, FEN-1
21453	15150342	Kimura,S., Tahira,Y., Ishibashi,T., Mori,Y., Mori,T., Hashimoto,J. and Sakaguchi,K.	DNA repair in higher plants; photoreactivation is the major DNA repair pathway in non-proliferating cells while excision repair (nucleotide excision repair and base excision repair) is active in proliferating cells.	Nucleic Acids Res.	32(9)	2760-2767	2004	_,_,FEN1,ORC1,_,_,_	UV-DDB1, OsUV-DDB1, OsUV-DDB,CSB, OsCBS,OsFEN1, OsFEN-1a, FEN-1,OsORC1,OsRPA32, RPA32, RPA2A ,qUVR-10, OsPHR, OsCPD, CPD,OsPCNA, PCNA
21454	15541369	Kiribuchi,K., Sugimori,M., Takeda,M., Otani,T., Okada,K., Onodera,H., Ugaki,M., Tanaka,Y., Tomiyama-Akimoto,C., Yamaguchi,T., Minami,E., Shibuya,N., Omori,T., Nishiyama,M., Nojiri,H. and Yamane,H.	RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein.	Biochem. Biophys. Res. Commun.	325(3)	857-863	2004	_	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
21456	15084714	Kobayashi,Y., Yamamoto,S., Minami,H., Kagaya,Y. and Hattori,T.	Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic Acid.	Plant Cell	16(5)	1163-1177	2004	SAPK5,SAPK7,SAPK8,SAPK6,SAPK10,SAPK2,SAPK4,SAPK1,SAPK3,SAPK9	OsSAPK5,OsSAPK7,OsSAPK8,OsSAPK6, OSRK1,OsSAPK10,OsSAPK2,OsSAPK4,OsSAPK1,OsSAPK3, REK,OsSAPK9
21458	9049269	Kodama,H., Akagi,H., Kusumi,K., Fujimura,T. and Iba,K.	Structure, chromosomal location and expression of a rice gene encoding the microsome omega-3 fatty acid desaturase.	Plant Mol. Biol.	33(3)	493-502	1997	FAD3,FADX,FADY	OsFAD3*, OsFAD3,OsFADX*, OsFADX,OsFADY*, OsFADY
21459	7788525	Koga-Ban,Y., Niki,T., Nagamura,Y., Sasaki,T. and Minobe,Y.	cDNA sequences of three kinds of beta-tubulins from rice.	DNA Res.	2(1)	21-26	1995	TUB5,TUB7,TUB4	OsTUB5, TUBB5, OSTB-50, R2242,OsTUB7, TUBB7, pTUB22,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
21460		Kojima,S., Hanzawa,S., Hayakawa,T., Hayashi,M. and Yamaya,T.	Nucleotide sequence of a genomic DNA (Accession No. AB037664) and a cDNA (Accession No. AB037595) encoding cytosolic glutamine synthetase in Sasanishiki, a leading cultivar of rice in northern Japan (PGR00-048)	Plant Physiol.	122(4)	1459	2000	GLN1;1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1
21461	13130077	Komatsu,K., Maekawa,M., Ujiie,S., Satake,Y., Furutani,I., Okamoto,H., Shimamoto,K. and Kyozuka,J.	LAX and SPA: Major regulators of shoot branching in rice.	Proc. Natl. Acad. Sci. U.S.A.	100(20)	11765-11770	2003	SPA,LAX1	spa,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
21462	12835399	Komatsu,M., Chujo,A., Nagato,Y., Shimamoto,K. and Kyozuka,J.	FRIZZY PANICLE is required to prevent the formation of axillary meristems and to establish floral meristem identity in rice spikelets.	Development	130(16)	3841-3850	2003	FZP,LHS1	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
21463	12897263	Komatsu,M., Shimamoto,K. and Kyozuka,J.	Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma.	Plant Cell	15(8)	1934-1944	2003	KARMA	Karma
21464	14731253	Komori,T., Ohta,S., Murai,N., Takakura,Y., Kuraya,Y., Suzuki,S., Hiei,Y., Imaseki,H. and Nitta,N.	Map-based cloning of a fertility restorer gene, Rf-1, in rice (Oryza sativa L.).	Plant J.	37(3)	315-325	2004	RF1,_,_,_	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,PPR762, PPR4, PPR4-762,PPR683, PPR5, PPR5-683,PPR794, PPR6, PPR6-794, PPR5
21465	2806916	Kondo,H., Emori,Y., Abe,K., Suzuki,K. and Arai,S.	Cloning and sequence analysis of the genomic DNA fragment encoding oryzacystatin.	Gene	81(2)	259-265	1989	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
21466	1697595	Kondo,H., Abe,K., Nishimura,I., Watanabe,H., Emori,Y. and Arai,S.	Two distinct cystatin species in rice seeds with different specificities against cysteine proteinases. Molecular cloning, expression, and biochemical studies on oryzacystatin-II.	J. Biol. Chem.	265(26)	15832-15837	1990	OC2,OC1	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
21467	1993479	Kondo,H., Abe,K., Emori,Y. and Arai,S.	Gene organization of oryzacystatin-II, a new cystatin superfamily member of plant origin, is closely related to that of oryzacystatin-I but different from those of animal cystatins.	FEBS Lett.	278(1)	87-90	1991	OC2,OC1	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
21468	12669200	Kong,J., Gong,J.M., Zhang,Z.G., Zhang,J.S. and Chen,S.Y.	A new AOX homologous gene OsIM1 from rice ( Oryza sativa L.) with an alternative splicing mechanism under salt stress.	Theor. Appl. Genet.	107(2)	326-331	2003	IM1	OsIM1, OsIM1a, OsIM2, OsIM, PTOX1
21469	10625676	Kopriva,S., Koprivova,A. and Suss,K.H.	Identification, cloning, and properties of cytosolic D-ribulose-5-phosphate 3-epimerase from higher plants.	J. Biol. Chem.	275(2)	1294-1299	2000	_,_	RPE,
21470	9338963	Kosugi,S. and Ohashi,Y.	PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene.	Plant Cell	9(9)	1607-1619	1997	_,_	PCF1, OsPCF1,PCF2, OsPCF2
21471	12000681	Kosugi,S. and Ohashi,Y.	DNA binding and dimerization specificity and potential targets for the TCP protein family.	Plant J.	30(3)	337-348	2002	_,_,_,_,_	OsPCF8, PCF8,OsPCF7, PCF7,OsPCF5, PCF5,PCF3, OsPCF3,OsPCF6, PCF6
21472	12060226	Kosugi,S. and Ohashi,Y.	E2F sites that can interact with E2F proteins cloned from rice are required for meristematic tissue-specific expression of rice and tobacco proliferating cell nuclear antigen promoters.	Plant J.	29(1)	45-59	2002	_,_	Orysa;E2F1, OsE2F1, E2F1,Orysa;E2F2, OsE2F2, E2F2
21473	10363365	Kouchi,H., Takane,K., So,R.B., Ladha,J.K. and Reddy,P.M.	Rice ENOD40: isolation and expression analysis in rice and transgenic soybean root nodules.	Plant J.	18(2)	121-129	1999	ENOD40,OBENOD40	OsENOD40,ObENOD40
21474		Koyama,H., Kihara,T., Takita,E. and Hara,T.	Isolation of Two cDNA Clones Encoding NADP-Specific Isocitrate Dehydrogenase from Rice (Accession Nos. AF155333 and AF155334). (PGR99-120)	Plant Physiol.	120(4)	1207	1999		
21475	8921376	Kraev,A., Chumakov,I. and Carafoli,E.	The organization of the human gene NCX1 encoding the sodium-calcium exchanger.	Genomics	37(1)	105-112	1996		
21476	8503935	Krishnan,H.B. and Pueppke,S.G.	Nucleotide sequence of an abundant rice seed globulin: homology with the high molecular weight glutelins of wheat, rye and triticale.	Biochem. Biophys. Res. Commun.	193(1)	460-466	1993	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77
21477	9520275	Kubis,S.E., Heslop-Harrison,J.S., Desel,C. and Schmidt,T.	The genomic organization of non-LTR retrotransposons (LINEs) from three Beta species and five other angiosperms.	Plant Mol. Biol.	36(6)	821-831	1998	_,_	,
21478	10430921	Kubo,N., Harada,K., Hirai,A. and Kadowaki,K.	A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins.	Proc. Natl. Acad. Sci. U.S.A.	96(16)	9207-9211	1999	SDH2,_	SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14,rpl5, rpl5-1
21479	10852496	Kubo,N., Jordana,X., Ozawa,K., Zanlungo,S., Harada,K., Sasaki,T. and Kadowaki,K.	Transfer of the mitochondrial rps10 gene to the nucleus in rice: acquisition of the 5' untranslated region followed by gene duplication.	Mol. Gen. Genet.	263(4)	733-739	2000	RPS10	rps10
21480	11418240	Kubo,N., Takano,M., Nishiguchi,M. and Kadowaki,K.	Mitochondrial sequence migrated downstream to a nuclear V-ATPase B gene is transcribed but non-functional.	Gene	271(2)	193-201	2001	_,_	OsVHA-B, VHA-B,
21481	2258052	Kumagai,M.H., Shah,M., Terashima,M., Vrkljan,Z., Whitaker,J.R. and Rodriguez,R.L.	Expression and secretion of rice alpha-amylase by Saccharomyces cerevisiae.	Gene	94(2)	209-216	1990	_	
21483	10791026	Kumekawa,N., Ohtsubo,E. and Ohtsubo,H.	Identification and phylogenetic analysis of gypsy-type retrotransposons in the plant kingdom.	Genes Genet. Syst.	74(6)	299-307	1999	RIRE2,RIRE8,RIRE3	RIRE2, Osr26, Rire2, Retrosat2,RIRE8, Osr33, Rire8,RIRE3
21484	9928939	Kumekawa,N., Ohtsubo,H., Horiuchi,T. and Ohtsubo,E.	Identification and characterization of novel retrotransposons of the gypsy type in rice.	Mol. Gen. Genet.	260(6)	593-602	1999	RIRE8A,RIRE8B,RIRE3,RIRE8,RIRES	RIRE8A,RIRE8B,RIRE3,RIRE8, Osr33, Rire8,RIRES
21485	11405631	Kumekawa,N., Ohmido,N., Fukui,K., Ohtsubo,E. and Ohtsubo,H.	A new gypsy-type retrotransposon, RIRE7: preferential insertion into the tandem repeat sequence TrsD in pericentromeric heterochromatin regions of rice chromosomes.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	265(3)	480-488	2001	RIRE7	RIRE7, Osr31, Rire7
21486	15215504	Kurusu,T., Sakurai,Y., Miyao,A., Hirochika,H. and Kuchitsu,K.	Identification of a Putative Voltage-Gated Ca(2+)-permeable Channel (OsTPC1) Involved in Ca(2+) Influx and Regulation of Growth and Development in Rice.	Plant Cell Physiol.	45(6)	693-702	2004	TPC1	OsTPC1, Tpc1, OsCC1, OsCL1 pore
21487	12782736	Kusaba,M., Miyahara,K., Iida,S., Fukuoka,H., Takano,T., Sassa,H., Nishimura,M. and Nishio,T.	Low glutelin content1: a dominant mutation that suppresses the glutelin multigene family via RNA silencing in rice.	Plant Cell	15(6)	1455-1467	2003	GLUB5,GLUB4,LGC1	GluB5, GLU2.3 ,GluB4, GluB-5,Lgc1 (LGC-1), Lgc1, LGC-1, glu1(t)*(Lgc1), glu1(t)*, glu8, Glu1
21488		Kusaka,M., Kurashige,M., Hirai,A. and Tsutsumi,N.	Characterization of two rice genes for nuclear-encoded chloroplast ribosomal protein L12 and phylogenetic analysis of the acquisition of transit peptides and gene duplication	Theor. Appl. Genet.	97(1-2)	110-115	1998	RPL12-2,RPL12-1	rpl12-2, CL12, OsRPL12-2,rpl12-1
21489	15654622	Kusano,H., Asano,T., Shimada,H. and Kadowaki,K.	Molecular characterization of ONAC300, a novel NAC gene specifically expressed at early stages in various developing tissues of rice.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(6)	616-626	2005	ONAC300	ONAC077, NAC77, NAC300, ONAC132, NAC132
21490	1531030	Kusano,T., Aguan,K., Abe,M. and Sugawara,K.	Nucleotide sequence of a rice rab16 homologue gene.	Plant Mol. Biol.	18(1)	127-129	1992	LEA22	OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45
21491	1363521	Kwon,S.T., Kikuchi,S. and Oono,K.	Molecular cloning and characterization of gravity specific cDNA in rice (Oryza sativa L.) suspension callus.	Jpn. J. Genet.	67(4)	335-348	1992	_,_	GSC 381, OsLEA6,GSC 233, AldC-2
21492	8278540	Kyozuka,J., McElroy,D., Hayakawa,T., Xie,Y., Wu,R. and Shimamoto,K.	Light-regulated and cell-specific expression of tomato rbcS-gusA and rice rbcS-gusA fusion genes in transgenic rice.	Plant Physiol.	102(3)	991-1000	1993	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
21493	9482818	Kyozuka,J., Konishi,S., Nemoto,K., Izawa,T. and Shimamoto,K.	Down-regulation of RFL, the FLO/LFY homolog of rice, accompanied with panicle branch initiation.	Proc. Natl. Acad. Sci. U.S.A.	95(5)	1979-1982	1998	RFL	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 
21494	10945340	Kyozuka,J., Kobayashi,T., Morita,M. and Shimamoto,K.	Spatially and temporally regulated expression of rice MADS bos genes with similarity to Arabidopsis class A, B, C genes	Plant Cell Physiol.	41(6)	710-718	2000	MADS2,RAP1A,RAG,RAP1B	OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10
21495	10394942	LaFayette,P.R., Eriksson,K.E. and Dean,J.F.	Characterization and heterologous expression of laccase cDNAs from xylem tissues of yellow-poplar (Liriodendron tulipifera).	Plant Mol. Biol.	40(1)	23-35	1999	LAC4	Oslacc, lacc, OsLAC4
21496	9119407	Lapenta,V., Chiurazzi,P., P., Pizzuti,A., Hanaoka,F. and Brahe,C.	SMT3A, a human homologue of the S. cerevisiae SMT3 gene, maps to chromosome 21qter and defines a novel gene family.	Genomics	40(2)	362-366	1997	SUMO1	smt3, SMT3, OsSUMO1
21497	10480395	Larkin,P.D. and Park,W.D.	Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism.	Plant Mol. Biol.	40(4)	719-727	1999	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21498	2541432	Lawton,M.A., Yamamoto,R.T., Hanks,S.K. and Lamb,C.J.	Molecular cloning of plant transcripts encoding protein kinase homologs.	Proc. Natl. Acad. Sci. U.S.A.	86(9)	3140-3144	1989	_	G11A 
21499	10717479	Lee,B.H., Won,S.H., Lee,H.S., Miyao,M., Chung,W.I., Kim,I.J. and Jo,J.	Expression of the chloroplast-localized small heat shock protein by oxidative stress in rice.	Gene	245(2)	283-290	2000	HSP26	OsHSP26, Oshsp26, OsHSP26.7, HSP26.7
21500	9375784	Lee,J.H., Chae,H.S., Lee,J.H., Hwang,B., Hahn,K.W., Kang,B.G. and Kim,W.T.	Structure and expression of two cDNAs encoding S-adenosyl-L-methionine synthetase of rice (Oryza sativa L.).	Biochim. Biophys. Acta	1354(1)	13-18	1997	_,_	OsSAM2, OsSAMS2, OS-SAMS2,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS
21501	10597036	Lee,J.H., Lee,J.W., Chung,Y.Y., Paek,K.H., Shin,J.S., Yun,C.H. and Kim,J.K.	Cloning and characterization of the chloroplast elongation factor EF-Tu cDNA of Oryza sativa L.	Mol. Cells	9(5)	484-490	1999	EFTU	tufA, EF-Tu
21502	16240176	Lee,J.H., Cho,Y.S., Yoon,H.S., Suh,M.C., Moon,J., Lee,I., Weigel,D., Yun,C.H. and Kim,J.K.	Conservation and Divergence of FCA Function between Arabidopsis and Rice.	Plant Mol. Biol.	58(6)	823-838	2005	FCA	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma
21504	10409053	Lee,M.C., Kim,Y.H., Yun,D.W., Ma,B.C., Nahm,B.H. and Eun,M.Y.	Cloning and Sequence Analysis of cDNAs Encoding Lipid-Transfer Proteins (Accession Nos. Y08691, AF017358, AF017359, AF017360, and AF017361) from Rice (PGR 99-061)	Plant Physiol.	120(1)	339	1999	_,LTP1,_	,Ltp1, RLTP1,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18
21506	11310740	Lee,M.W., Qi,M. and Yang,Y.	A novel jasmonic acid-inducible rice myb gene associates with fungal infection and host cell death.	Mol. Plant Microbe Interact.	14(4)	527-535	2001	_,C,_,PR10A,JAMYB,GAMYB,_,_,_,_,_,_,_,_,_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsJAmyb, JAmyb, OsJAMyb ,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsMyb7,OsMyb1, OSMYB1, MYB1,OsMyb2, OSMYB2, MYB2,OsMyb10,OsMyb5, OSMYB5, MYB5,OsMyb12,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110,OsMyb3, OSMYB3, MYB3,OsMyb11, Myb11, OsMYB60, MYB60
21507	11432928	Lee,R.H., Wang,C.H., Huang,L.T. and Chen,S.C.	Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes.	J. Exp. Bot.	52(358)	1117-1121	2001	_,_,_,_,_,_,_,_,_,_,_,SALT,_,_	OsFbox178, Os_F0705,,Oryzasin,,OsHPPD, HPPD, Osl30, l30,OsL55,OsUXS2, UXS-2,Osh69,Osl2,OsRD22, RD22, OsBURP16, BURP16,Osh36, OsH36, H36, OsAMTR1, AMTR1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsI57, I57, OsKAT1, KAT1,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85
21508	15604681	Lee,R.H., Lin,M.C. and Chen,S.C.	A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence.	Plant Mol. Biol.	55(2)	281-295	2004	OSH69	Osh69
21509	14701936	Lee,S., Kim,J., Son,J.S., Nam,J., Jeong,D.H., Lee,K., Jang,S., Yoo,J., Lee,J., Lee,D.Y., Kang,H.G. and An,G.	Systematic Reverse Genetic Screening of T-DNA Tagged Genes in Rice for Functional Genomic Analyses: MADS-box Genes as a Test Case.	Plant Cell Physiol.	44(12)	1403-1411	2003	RAP1B,MADS18,MADS24,MADS22,MADS4,MADS35,MADS36,MADS30,MADS56,MADS20,FST ,MADS21,MADS47,MADS25,MADS33,MADS32,MADS31,MADS13,MADS17,RAP1A,MFO1,MADS2,MADS26,MADS23,MADS7,MADS27,MADS55,MADS57,MADS50,MADS5,PAP2,LHS1	MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS22, RMD1,OsMADS4, PI1,OsMADS35,OsMADS36,OsMADS30,OsMADS56, FDRMADS8, RMADS214,OsMADS20,OsMADS29, MADS29, OsFST,OsMADS21, RMADS207,OsMADS47, OsMDP1, MDP, MDP1,OsMADS25,OsMADS33,OsMADS32, CFO1, CFO1/OsMADS32, TRI1, OsMADS32/CFO, CFO,OsMADS31,OsMADS13, MAF1, RMADS206,OsMADS17, NMADS3, RMADS213, nmads3,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS6, MADS6, OsMFO1,OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMADS26, FDRMADS3, RMADS220,OsMADS23, MADS-23,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS55,OsMADS57, MADS-57,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,OsMADS5, FDRMADS2,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
21510	11598238	Lee,Y. and Kende,H.	Expression of beta-expansins is correlated with internodal elongation in deepwater rice.	Plant Physiol.	127(2)	645-654	2001	EXPB1A,EXPB5,EXPB6,EXPB8,EXPB9,EXPB10,EXPB13,EXPB14,EXPB12,EXPB7,EXPB1B,EXPB11,EXPB4,EXPB2,EXPB3	OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1,OxEXPB5, osaEXPb1.19,OsEXPB6, osaEXPb1.8, EXPb1.8,,OsEXPB9, osaEXPb1.6,OsEXPB10, osaEXPb1.5,OsEXPB13, osaEXPb1.4p,OsEXPB14, osaEXPb1.18,,OsEXPB7, osaEXPb1.12,OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1,OsEXPB11, osaEXPb1.20,OsEXPB4, OsaEXPb1.7, EXPb1.7,OsEXPB2, OsaEXPb1.9, EXPb1.9,OsEXPB3, osaEXPb1.10, EXPb1.10
21511	12428004	Lee,Y. and Kende,H.	Expression of alpha-Expansin and Expansin-Like Genes in Deepwater Rice.	Plant Physiol.	130(3)	1396-1405	2002	EXPA2,EXPA12,EXPA18,EXPA22,EXPA20,EXPA15,EXPA16,EXPA3,EXPA8,EXPA4,EXPL1,EXPL3,EXPLR1,EXPL2,EXPA9,EXPA21,EXPA26,EXPA24,EXPA23,EXPA7,EXPA1,EXPA25,EXPA5,EXPA6,EXPA10,EXPA14,EXPA13,EXPA17,EXPA11,EXPA19	OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXPA12, OsEXP12, osaEXPa1.15,OsEXPA18, OsEXP18, osaEXPa1.3,OsEXPA22, OsEXP22, osaEXPa1.9,OsEXPA20, OsEXP20, osaEXPa1.1,OsEXPA15, OsEXP15, osaEXPa1.8,OsEXPA16, OsEXP16, osaEXPa1.27,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,,,,,OsEXPA9, OsEXP9, osaEXPa1.19,OsEXPA21, OsEXP21, osaEXPa1.21,EXPA26, OsEXP26, osaEXPa1.29,OsEXPA24, OsEXP24, osaEXPa1.10,OsEXPA23, OsEXP23, osaEXPa1.12,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXPA25, OsEXP25, osaEXPa1.6,OsEXPA5, OsEXP5, osaEXPa1.20,OsEXPA6, OsEXP6, osaEXPa1.24,OsEXPA10, OsEXP10, osaEXPa1.28,OsEXPA14, OsEXP14, osaEXPa1.11,OsEXPA13, OsEXP13, osaEXPa1.13,OsEXPA17, OsEXP17, osaEXPa1.31,OsEXPA11, OsEXP11, osaEXPa1.25,OsEXPA19, OsEXP19, osaEXPa1.2
21512	11641069	Lee,Y., Choi,D. and Kende,H.	Expansins: ever-expanding numbers and functions.	Curr. Opin. Plant Biol.	4(6)	527-532	2001	EXPB7,EXPB12,EXPB9,EXPB10,EXPB13,EXPB14,EXPA7,EXPA17,EXPA11,EXPA13,EXPA14,EXPA9,EXPA21,EXPA19,EXPA22,EXPA24,EXPA26,EXPB1A,EXPA23,EXPA12,EXPB5,EXPA2,EXPA16,EXPB3,EXPB11,EXPA15,EXPA4,EXPA6,EXPB4,EXPB6,EXPB2,EXPA18,EXPA25,EXPA20,EXPB1B,EXPA8,EXPA3,EXPA1,EXPA10,EXPA5	OsEXPB7, osaEXPb1.12,OsEXPB12, OsaEXPb1.17,OsEXPB9, osaEXPb1.6,OsEXPB10, osaEXPb1.5,OsEXPB13, osaEXPb1.4p,OsEXPB14, osaEXPb1.18,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXPA17, OsEXP17, osaEXPa1.31,OsEXPA11, OsEXP11, osaEXPa1.25,OsEXPA13, OsEXP13, osaEXPa1.13,OsEXPA14, OsEXP14, osaEXPa1.11,OsEXPA9, OsEXP9, osaEXPa1.19,OsEXPA21, OsEXP21, osaEXPa1.21,OsEXPA19, OsEXP19, osaEXPa1.2,OsEXPA22, OsEXP22, osaEXPa1.9,OsEXPA24, OsEXP24, osaEXPa1.10,EXPA26, OsEXP26, osaEXPa1.29,OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1,OsEXPA23, OsEXP23, osaEXPa1.12,OsEXPA12, OsEXP12, osaEXPa1.15,OxEXPB5, osaEXPb1.19,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXPA16, OsEXP16, osaEXPa1.27,OsEXPB3, osaEXPb1.10, EXPb1.10,OsEXPB11, osaEXPb1.20,OsEXPA15, OsEXP15, osaEXPa1.8,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPA6, OsEXP6, osaEXPa1.24,OsEXPB4, OsaEXPb1.7, EXPb1.7,OsEXPB6, osaEXPb1.8, EXPb1.8,OsEXPB2, OsaEXPb1.9, EXPb1.9,OsEXPA18, OsEXP18, osaEXPa1.3,OsEXPA25, OsEXP25, osaEXPa1.6,OsEXPA20, OsEXP20, osaEXPa1.1,OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1,OsEXPA8, OsEXP8, osaEXPa1.17,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXPA10, OsEXP10, osaEXPa1.28,OsEXPA5, OsEXP5, osaEXPa1.20
21513	10898978	Lee,Y.R. and Liu,B.	Identification of a phragmoplast-associated kinesin-related protein in higher plants.	Curr. Biol.	10(13)	797-800	2000	_	PAKRP1, OsKRP1, SIP18 
21514		Lei,H., Zhou,B., Han,B. and Hong,G.	A S-locus receptor-like kinase cluster is revealed in a 108kb fragment of rice	Gene			2002		
21515	1716496	Lei,M. and Wu,R.	A novel glycine-rich cell wall protein gene in rice.	Plant Mol. Biol.	16(2)	187-198	1991	_	Osgrp-1
21516	9419382	Leister,D., Kurth,J., Laurie,D.A., Yano,M., Sasaki,T., Devos,K., Graner,A. and Schulze-Lefert,P.	Rapid reorganization of resistance gene homologues in cereal genomes.	Proc. Natl. Acad. Sci. U.S.A.	95(1)	370-375	1998	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	r5,r1,r6,r11,r12,r7,r2,r15,r16,r3,r4,r8,r9,r10,r14,r13
21517	15604706	Leonard,R., Kolarich,D., Paschinger,K., Altmann,F. and Wilson,I.	A genetic and structural analysis of the -glycosylation capabilities	Plant Mol. Biol.	55(5)	631-644	2004	_,RCN11,_	GlcNAc-TI,Xyl, OsXylT, RCN11/OsXylT,OsFUT11, FUT11, FucTA, OsFucT
21520		Li,J., Liang,C.Y., Yang,J.L., Xing,Q.H., Yang,D.E., Deng,Q.Y., Weng,M.L. and Wang,B.	Cloning of the APRT gene from rice and analysis of its association with TGMS	Acta Bot. Sin.	45(11)	1319-1328	2003	APT2	OsAPT2, APRT
21521	10725557	Li,L., Li,S., Tao,Y. and Kitagawa,Y.	Molecular cloning of a novel water channel from rice: its products expression in Xenopus oocytes and involvement in chilling tolerance.	Plant Sci.	154(1)	43-51	2000	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
21523	10978528	Li,W.J., Feng,H., Fan,J.H., Zhang,R.Q., Zhao,N.M. and Liu,J.Y.	Molecular cloning and expression of a phospholipid hydroperoxide glutathione peroxidase homolog in Oryza sativa.	Biochim. Biophys. Acta	1493(1-2)	225-230	2000	PHGPX	OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX 
21524	12687001	Li,X., Qian,Q., Fu,Z., Wang,Y., Xiong,G., Zeng,D., Wang,X., Liu,X., Teng,S., Hiroshi,F., Yuan,M., Luo,D., Han,B. and Li,J.	Control of tillering in rice.	Nature	422(6932)	618-621	2003	MOC1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33
21525	10831839	Li,Y., Nakazono,M., Tsutsumi,N. and Hirai,A.	Molecular and cellular characterizations of a cDNA clone encoding a novel isozyme of aldehyde dehydrogenase from rice.	Gene	249(1-2)	67-74	2000	ALDH1A,ALDH2A	ALDH1a, Aldh1a, OsALDH1a, OsALDH2C4, ALDH2C4 ,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  
21526	12953108	Li,Y., Qian,Q., Zhou,Y., Yan,M., Sun,L., Zhang,M., Fu,Z., Wang,Y., Han,B., Pang,X., Chen,M. and Li,J.	BRITTLE CULM1, Which Encodes a COBRA-Like Protein, Affects the Mechanical Properties of Rice Plants	Plant Cell	15(9)	2020-2031	2003	BC1	bc1, bc-1, OsBC1, CWA1, FP1
21527	10651810	Li,Z. and Komatsu,S.	Molecular cloning and characterization of calreticulin, a calcium-binding protein involved in the regeneration of rice cultured suspension cells.	Eur. J. Biochem.	267(3)	737-745	2000	_	CRO1, CRT
21528		Li,Z.-Y. and Chen,S.-Y.	Inducible expression of translation elongation factor 1A gene in rice seedlings in response to environmental stresses	Acta Bot. Sin.	41	800-806	1999	RFA3,_,RFA1,RFA4,RFA2	rfa3*, REFA3, refa3,REF1A,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna
21529		Li,Z.Y. and Chen,S.Y.	Molecular cloning, chromosomal mapping and expression analysis of disease resistance gene homologues in rice (Oryza sativa L.)	Chin. Sci. Bull.	44	1202-1207	1999	_,_,_,_	Osr1A,Osr1B,Osr2,Osr3
21530		Li,Z.Y. and Chen,S.Y.	Differential accumulation of S-adenosylmethionine decarboxylase transcript in rice seedlings in response to salt and drought stresses	Theor. Appl. Genet.	100(5)	782-788	2000	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
21531		Li,Z.Y. and Chen,S.Y.	Isolation, characterization and chromosomal location of a novel zinc-finger protein gene that is down-regulated by salt stress	Theor. Appl. Genet.	102(2-3)	363-368	2001	_	OsZFP1, SRZ3
21532	10791831	Li,Z.Y., Chen,S.Y., Zheng,X.W. and Zhu,L.H.	Identification and chromosomal localization of a transcriptionally active retrotransposon of Ty3-gypsy type in rice.	Genome	43(2)	404-408	2000	RIRE9	RIRE9, Osr27, Rire9
21533	12136108	Liang,D., Zhou,H., Zhang,P., Chen,Y.Q., Chen,X., Chen,C.L. and Qu,L.H.	A novel gene organization: intronic snoRNA gene clusters from Oryza sativa.	Nucleic Acids Res.	30(14)	3262-3272	2002	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Z100b,Z100c,Z100d,Z101,Z102,Z103h,Z103b,Z103a,Z103c,Z103d,Z103f,Z103g,Z104a,Z104b,Z105,Z103e,Z106,Z107,Z108,Z109,Z110,Z111,Z112,Z113,Z114a,Z114b,Z100a
21534	12815033	Liang,Y.-K., Wang,Y., Zhang,Y., Li,S.-G., Lu,X.-C., Li,H., Zou,C., Xu,Z.-H. and Bai,S.-N.	OsSET1, a novel SET-domain-containing gene from rice.	J. Exp. Bot.	54(389)	1995-1996	2003	IEZ1	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718
21535	11929961	Lid,S.E., Gruis,D., Jung,R., Lorentzen,J.A., Ananiev,E., Chamberlin,M., Niu,X., Meeley,R., Nichols,S. and Olsen,O.A.	The defective kernel 1 (dek1) gene required for aleurone cell development in the endosperm of maize grains encodes a membrane protein of the calpain gene superfamily.	Proc. Natl. Acad. Sci. U.S.A.	99(8)	5460-5465	2002	ADL1	adl1
21536	15951489	Lieberherr,D., Thao,N.P., Nakashima,A., Umemura,K., Kawasaki,T. and Shimamoto,K.	A Sphingolipid Elicitor-Inducible Mitogen-Activated Protein Kinase Is Regulated by the Small GTPase OsRac1 and Heterotrimeric G-Protein in Rice.	Plant Physiol.	138(3)	1644-1652	2005	MAPK6,MAPK5A,RAC1	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsMAPK5a,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
21537	12751334	Lin,C., Jiang,L., Zhang,X., Qian,X., Liang,Z. and Yang,J.	Cloning and prokaryotic expression of a cDNA encoding a putative mitochondrial malate dehydrogenase in Oryza sativa	DNA Seq.	14(1)	75-77	2003	_	OsmMDH, mMDH
21538	15620222	Lin,C.F., Jiang,R.H., Jiang,L.Z., Qian,X.Y., Attia,K. and Yang,J.S.	Cloning, characterization and prokaryotic expression of cytosolic malate dehydrogenase from Oryza sativa.	DNA Seq.	15(4)	314-318	2004	CMDH	OscMDH, cMDH, OsMDH, MDH
21539	15620214	Lin,C.F., Wei,C., Jiang,L.Z., Li,K.G., Qian,X.Y., Attia,K. and Yang,J.S.	Isolation, characterization and expression analysis of a leaf-specific phosphoenolpyruvate carboxylase gene in Oryza sativa.	DNA Seq.	15(4)	269-276	2004	_,_	Osppc, OSPPC, Osppc2a, ppc2a,
21540	10677431	Lin,C.M., Koh,S., Stacey,G., Yu,S.M., Lin,T.Y. and Tsay,Y.F.	Cloning and functional characterization of a constitutively expressed nitrate transporter gene, OsNRT1, from rice.	Plant Physiol.	122(2)	379-388	2000	NRT1	OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 
21541	16169685	Lin,T., He,X., Yang,L., Shou,H. and Wu,P.	Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice	Gene	360(1)	27-34	2005	EIL1,ETR2,SIP2A,ACO1,_,ACS1,ERF3	OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1,OsACO1, ACO,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,ACC1*, OsACS1, Os-ACS1, ACC1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
21542	9599133	Lin,T.Y., Wang,J.F., Liu,K.H. and Wang,C.T.	Cloning and sequencing of a rice cDNA encoding translation elongation factor-1 alpha (Accession No. AF030517) (PGR98-058)	Plant Physiol.	116(4)	1604	1998	RFA1	rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1
21543		Lira-Ruan,V., Ross,E.J.H., Sarath,G., Klucas,R.V. and Arredondo-Peter,R.	Mapping and analysis of a hemoglobin gene family from Oryza sativa	Plant Physiol. Biochem.	40(3)	199-202	2002	Hb4,Hb1,Hb3,Hb2	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
21544	1623185	Litts,J.C., Erdman,M.B., Huang,N., Karrer,E.E., Noueiry,A., Quatrano,R.S. and Rodriguez,R.L.	Nucleotide sequence of the rice (Oryza sativa) Em protein gene (Emp1).	Plant Mol. Biol.	19(2)	335-337	1992	EM	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 
21545	16202242	Liu,J.G., Yao,Q.H., Zhang,Z., Peng,R.H., Xiong,A.S., Xu,F. and Zhu,H.	Isolation and characterization of a cDNA encoding two novel heat-shock factor OsHSF6 and OsHSF12 in Oryza Sativa L.	J. Biochem. Mol. Biol.	38(5)	602-608	2005	HSFA2C,HSFB4B	HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, HSF6, OsHsfA6a, HsfA6a ,HSFB4b, OsHSFB4b, OsHsf-19, rHsf12, OsHSF12, HSF12, HSF19
21547	9729167	Liu,K.H. and Lin,T.Y.	Cloning of a cDNA encoding a lipid-transfer protein from rice (Accession No. AF051369) (PGR98-085)	Plant Physiol.	117(1)	333	1998	_	OsLTP1.15, OsLtpI.15
21548	12615950	Liu,L.H., Ludewig,U., Frommer,W.B. and N.	AtDUR3 encodes a new type of high-affinity urea/H+ symporter in Arabidopsis.	Plant Cell	15(3)	790-800	2003	_	OsDUR3, DUR3 
21549	7858235	Liu,Q., Umeda,M. and Uchimiya,H.	Isolation and expression analysis of two rice genes encoding the major intrinsic protein.	Plant Mol. Biol.	26(6)	2003-2007	1994	TIP1;1,NIP1;1	OsTIP1;1, TIP1-1, rTIP1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1
21550	14535884	Liu,W., Xu,Z.H., Luo,D. and Xue,H.W.	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity.	Plant J.	36(2)	189-202	2003	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1
21551	12561471	Liu,W.D. and Wang,S.P.	Analysis and mapping of homologous sequences of barley disease resistance gene Mlo and maize disease resistance gene Hm1 in rice	Acta Genetica Sinica	29(10)	875-879	2002	_,MLO_	DFR-1,OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6
21552		Liu,Z., Pan,N. and Chen,Z.	Cloning and sequencing of calmodulin cDNA from rice (oryza sativa)	Acta Bot. Sin.	35	363-369	1991		
21553	10528264	Lopez-Dee,Z.P., Wittich,P., M., Rigola,D., I., Gorla,M.S., Kater,M.M. and Colombo,L.	OsMADS13, a novel rice MADS-box gene expressed during ovule development.	Dev Genet.	25(3)	237-244	1999	MADS13	OsMADS13, MAF1, RMADS206
21555	12172034	Lu,C.A., Ho,T.H., Ho,S.L. and Yu,S.M.	Three Novel MYB Proteins with One DNA Binding Repeat Mediate Sugar and Hormone Regulation of alpha-Amylase Gene Expression.	Plant Cell	14(8)	1963-1980	2002	_,_,_	OsMYBS1, MYBS1, Os-MYBS1, Mybs1,OsMYBS3, MYBS3,OsMYBS2, MYBS2
21556	15683393	Lu,Y., Lueders,T., Friedrich,M.W. and Conrad,R.	Detecting active methanogenic populations on rice roots using stable isotope probing.	Environ. Microbiol.	7(3)	326-336	2005		
21557	15685422	Lu,Z., Takano,T. and Liu,S.	Purification and characterization of two ascorbate peroxidases of rice (Oryza sativa L.) expressed in Escherichia coli.	Biotechnol. Lett.	27(1)	63-67	2005	APX1,APX2	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
21558	2649869	Luan,S. and Bogorad,L.	Nucleotide sequences of two genes encoding the light harvesting chlorophyll a/b binding protein of rice.	Nucleic Acids Res.	17(6)	2357-2358	1989	CAB2R,CAB1R	cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b
21559	1392604	Luan,S. and Bogorad,L.	A rice cab gene promoter contains separate cis-acting elements that regulate expression in dicot and monocot plants.	Plant Cell	4(8)	971-981	1992	CAB1R	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b
21560	11264415	Lukens,L. and Doebley,J.	Molecular evolution of the teosinte branched gene among maize and related grasses.	Mol. Biol. Evol.	18(4)	627-638	2001	FC1	fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
21561	16163610	Luo,H., Song,F., Goodman,R.M. and Zheng,Z.	Up-Regulation of OsBIHD1, a Rice Gene Encoding BELL Homeodomain Transcriptional Factor, in Disease Resistance Responses.	Plant Biol.	7(5)	459-468	2005	_	OsBIHD1, BIHD1
21562	9679062	Luschnig,C., Gaxiola,R.A., Grisafi,P. and Fink,G.R.	EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis thaliana.	Genes Dev.	12(14)	2175-2187	1998	PIN1B	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
21563	16240171	Pramanik,M.H. and Imai,R.	Functional Identification of a Trehalose 6-phosphate Phosphatase Gene that is Involved in Transient Induction of Trehalose Biosynthesis during Chilling Stress in Rice.	Plant Mol. Biol.	58(6)	751-762	2005	TPP1,TPP6,TPP3,TPP9,TPP8,TPP7,TPP5,TPP4	OsTPP1, OsTPS,OsTPP6,OsTPP3,OsTPP9,OsTPP8, OsTPP2,OsTPP7,OsTPP5,OsTPP4, OsTPP7
21564	12582559	M., Lihuang,Z. and Akiyama,T.	Molecular cloning, characterization, expression and chromosomal location of OsGAPDH, a submergence responsive gene in rice ( Oryza sativa L.).	Theor. Appl. Genet.	105(1)	34-42	2002	GAPDH(T)	OsGAPDH(t)
21566	15159629	Ma,H., Xu,S.P., Luo,D., Xu,Z.H. and Xue,H.W.	OsPIPK 1, a rice phosphatidylinositol monophosphate kinase, regulates rice heading by modifying the expression of floral induction genes.	Plant Mol. Biol.	54(2)	295-310	2004	PIPK1	OsPIPK1, PIP5K
21567	9750105	Macknight,R., Lister,C. and Dean,C.	Rice cDNA clones OsGRP1 and OsGRP2 (Accession Nos. AJ002893 and AJ002894, respectively) define two classes of glycine-rich RNA-binding proteins (PGR98-153)	Plant Physiol.	117(4)	1527	1998		
21568	9426621	Magaraggia,F., Solinas,G., Valle,G., Giovinazzo,G. and Coraggio,I.	Maturation and translation mechanisms involved in the expression of a myb gene of rice.	Plant Mol. Biol.	35(6)	1003-1008	1997	_	myb7
21569		Mago,R., Nair,S. and Mohan,M.	Resistance gene analogues from rice: cloning, sequencing and mapping	Theor. Appl. Genet.	99(1-2)	50-57	1999	_,_,_,_,_,_,_,_,_,_,_,_,_,_	RGA1,RGA2,RGA8,RGA15,RGA12,RGA16,RGA29,RGA33,RGA38,RGA40,RGA42,RGA47,RGA59,RGA7
21570	14550537	Majumder,A.L., Chatterjee,A., K. and Majee,M.	Diversification and evolution of L-myo-inositol 1-phosphate synthase.	FEBS Lett.	553(1-2)	3-10	2003	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
21571	10527423	Malz,S. and Sauter,M.	Expression of two PIP genes in rapidly growing internodes of rice is not primarily controlled by meristem activity or cell expansion.	Plant Mol. Biol.	40(6)	985-995	1999	PIP2A,PIP1A	OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
21572	15668792	Margis-Pinheiro,M., Zhou,X.R., Zhu,Q.H., Dennis,E.S. and Upadhyaya,N.M.	Isolation and characterization of a Ds-tagged rice (Oryza sativa L.) GA-responsive dwarf mutant defective in an early step of the gibberellin biosynthesis pathway.	Plant Cell Rep.	23(12)	819-833	2005	KS4,KS5,KS3,KS6,KS7,KS1	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26
21575	2139168	Masumura,T., Hibino,T., Kidzu,K., Mitsukawa,N., Tanaka,K. and Fujii,S.	Cloning and characterization of a cDNA encoding a rice 13 kDa prolamin.	Mol. Gen. Genet.	221(1)	1-7	1990	_	RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25
21576	8865668	Mathews,S. and Sharrock,R.A.	The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms.	Mol. Biol. Evol.	13(8)	1141-1150	1996	PHYB,PHYC,PHYA	phyB, PHYB1, OsPHYB, OsphyB,OsPHYC, OsPHYCa, OsPHYCb,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
21577	9787463	Matsuki,R., Iwasaki,T., Shoji,K., Jiang,C.J. and Yamamoto,N.	Isolation and characterization of two importin-beta genes from rice.	Plant Cell Physiol.	39(8)	879-884	1998	IMPB2,IMPB1	Importin beta 2,Importin beta 1
21578	1397289	Matsumoto,S., Oizumi,N., Taira,H. and Ejiri,S.	Cloning and sequencing of the cDNA encoding rice elongation factor 1 beta'.	FEBS Lett.	311(1)	46-48	1992	EEF1B'	eEF-1beta', EF-1beta'
21579	8307147	Matsumoto,S., Terui,Y., Xi,S., Taira,H. and Ejiri,S.	Cloning and characterization of the cDNA encoding rice elongation factor 1 beta.	FEBS Lett.	338(1)	103-106	1994	EEF1B',EEF1B	eEF-1beta', EF-1beta',eEF-1beta, EF-1beta
21580		Matsuoka,M.	Classification and characterization of cDNA that encodes the light-harvesting chlorophyll a/b binding protein of photosystem II from rice	Plant Cell Physiol.	31(4)	519-526	1990	CAB1R,_	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 
21581		Matsuoka,M., Kano-Murakami,Y., Tanaka,Y., Ozeki,Y. and Yamamoto,N.	Classification and nucleotide sequence of cDNA encoding the small subunit of ribulose-1,5-bisphosphate carboxylase from rice	Plant Cell Physiol.	29(6)	1015-1022	1988	RBCS,_	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,RbcS3, OsRBCS3, OsRbcS3, rbcS 
21583	9747803	Mauch,F., Reimmann,C., Freydl,E., Schaffrath,U. and Dudler,R.	Characterization of the rice pathogen-related protein Rir1a and regulation of the corresponding gene.	Plant Mol. Biol.	38(4)	577-586	1998	RIR1B	Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28
21584	11435398	Mayer,K., Murphy,G., Tarchini,R., Wambutt,R., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Lemcke,K., Haase,D., Hall,C.R., A.M., Tingey,S.V., Mewes,H.W., Bevan,M.W. and Bancroft,I.	Conservation of microstructure between a sequenced region of the genome of rice and multiple segments of the genome of Arabidopsis thaliana.	Genome Res.	11(7)	1167-1174	2001		
21585	12372141	McCarthy,E.M., Liu,J., Lizhi,G. and McDonald,J.F.	Long terminal repeat retrotransposons of Oryza sativa.	Genome Biol.	3(10)	RESEARCH0053	2002	_,_,RIRE9,RIRE7,RIRE2,TOS17,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RIRE1,RIRE8,_,TOS1,_	Osr36,Osr37,RIRE9, Osr27, Rire9,RIRE7, Osr31, Rire7,RIRE2, Osr26, Rire2, Retrosat2,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7,Osr1, Tos14, Rire15,Osr3,Osr5,Osr2,Osr6,Osr7,Osr8,Osr9,Osr10,Osr16, Tos6,Osr17,Osr15, Tos12 ,Osr19,Osr12,Osr18,Osr22,Osr20,Osr25,Osr24,Osr28,Osr29,Osr30,Osr32,Osr34,Osr38,Osr39,Osr40,Osr41,Osr42,Osr43,Osr44,Osr23,Osr35,RIRE1, Osr11, Rire1,RIRE8, Osr33, Rire8,Osr4,Tos1*, Tos1, Osr14, Tos4,Osr13, Tos5 
21586	2101689	McElroy,D., Rothenberg,M. and Wu,R.	Structural characterization of a rice actin gene.	Plant Mol. Biol.	14(2)	163-171	1990	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
21587	2136633	McElroy,D., Zhang,W., Cao,J. and Wu,R.	Isolation of an efficient actin promoter for use in rice transformation.	Plant Cell	2(2)	163-171	1990	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
21588	1753941	McElroy,D., Blowers,A.D., Jenes,B. and Wu,R.	Construction of expression vectors based on the rice actin 1 (Act1) 5' region for use in monocot transformation.	Mol. Gen. Genet.	231(1)	150-160	1991	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
21589	14581626	McGee,J.D., Roe,J.L., Sweat,T.A., Wang,X., Guikema,J.A. and Leach,J.E.	Rice phospholipase d isoforms show differential cellular location and gene induction.	Plant Cell Physiol.	44(10)	1013-1026	2003	PLDalpha4,PLDdelta2,PLDalpha5,PLDALPHA3,PLDalpha1	OsPLDalpha4, RPLD3, OsPLDeta2,OsPLDdelta2, RPLD5, OsPLDnu1,OsPLDalpha5, RPLD4, OsPLDeta3,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2,RPLD1, PLD1, OsPLDalpha1
21591		Medina,J. and Quatrano,R.S.	Molecular cloning and sequence analysis of a cDNA encoding a SEC14-like protein from rice (Accession No. U88068) (PGR98-042)	Plant Physiol.	116(3)	1192	1998	_	
21592	8790293	Meijer,A.H., E.L. and Hoge,J.H.	Novel members of a family of AT hook-containing DNA-binding proteins from rice are identified through their in vitro interaction with consensus target sites of plant and animal homeodomain proteins.	Plant Mol. Biol.	31(3)	607-618	1996	_,_,_	Os-AT2,Os-AT1,Os-PF1, PF1
21593	9076993	Meijer,A.H., Scarpella,E., E.L., Qin,L., Taal,A.J., Rueb,S., Harrington,S.E., McCouch,S.R., Schilperoort,R.A. and Hoge,J.H.	Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice.	Plant J.	11(2)	263-276	1997	HOX1	Oshox1, OsHox1
21595		Meijer,A.H., R.J., Qin,L. and Hoge,J.H.C.	Osjab1: (Accession No. AF072849), A rice homolog of the human JAB1 transcriptional coactivator (PGR98-149)	Plant Physiol.	117(4)	1526	1998	_	Osjab1, jab1, CSN5, OsCSN5
21596	10732669	Meijer,A.H., R.J., d'Erfurth,I., Shen,W. and Hoge,J.H.	HD-Zip proteins of families I and II from rice: interactions and functional properties.	Mol. Gen. Genet.	263(1)	12-21	2000	HOX6,HOX7,HOX3,HOX5,HOX1,HOX4	Oshox6, OsHox6,Oshox7, OsHox7,Oshox3, OsHox3,Oshox5, OsHox5, EIP9,Oshox1, OsHox1,Oshox4, OsHox4
21597	8759917	Mekhedov,S.I. and Kende,H.	Submergence enhances expression of a gene encoding 1-aminocyclopropane-1-carboxylate oxidase in deepwater rice.	Plant Cell Physiol.	37(4)	531-537	1996	ACO1	OsACO1, ACO
21598		Membre,N. and Bernier,F.	The rice genome expresses at least six different genes for oxalate oxidase/germin-like proteins (Accession Nos. AF032971, AF032972, AF032973, AF032974, AF032975, and AF032976) (PGR98-021)	Plant Physiol.	116(2)	868	1998	GLP8-7,_,_,_,GLP1,GLP8-2,GLP8-3,GLP8-4	OsGLP8-7, GER6, OsRGLP2, RGLP2,GER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1,GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3,GER7, OsGLP3-7, GLP3-7,OsGLP1, GER1, GER5, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14,OsGLP8-2, GER3, OsGER3, GLP16, OsEnS-117,OsGLP8-3, GER2,OsGLP8-4, GER1. OsGer1
21599		Mi,Z., Wang,S. and Wu,N.	Isolation of osRACD gene encoding a small GTP-binding protein from rice	Chin. Sci. Bull.	47	1673-1679	2002	RAC5	Osrac5, OsRac5, RACD, OsRacD, OsRACD
21600	8720923	Midoh,N. and Iwata,M.	Cloning and characterization of a probenazole-inducible gene for an intracellular pathogenesis-related protein in rice.	Plant Cell Physiol.	37(1)	9-18	1996	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
21602	8287970	Minakuchi,K., Yabushita,T., Masumura,T., Ichihara,K. and Tanaka,K.	Cloning and sequence analysis of a cDNA encoding rice glutaredoxin.	FEBS Lett.	337(2)	157-160	1994	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2
21603	8424958	Minami,E. and Tanaka,Y.	Nucleotide sequence of the gene for phenylalanine ammonia-lyase of rice and its deduced amino acid sequence.	Biochim. Biophys. Acta	1171(3)	321-322	1993	PAL	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8
21604	2806257	Minami,E., Ozeki,Y., Matsuoka,M., Koizuka,N. and Tanaka,Y.	Structure and some characterization of the gene for phenylalanine ammonia-lyase from rice plants.	Eur. J. Biochem.	185(1)	19-25	1989	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1
21605	8759920	Minami,E., Kuchitsu,K., He,D.Y., Kouchi,H., Midoh,N., Ohtsuki,Y. and Shibuya,N.	Two novel genes rapidly and transiently activated in suspension-cultured rice cells by treatment with N-acetylchitoheptaose, a biotic elicitor for phytoalexin production.	Plant Cell Physiol.	37(4)	563-567	1996	EL2,EL3	Orysa; EL2,
21606	16172530	Miyashita,N.T., Yoshida,K. and Ishii,T.	DNA variation in the metallothionein genes in wild rice Oryza rufipogon: Relationship between DNA sequence polymorphism, codon bias and gene expression.	Genes Genet. Syst.	80(3)	173-183	2005	MTI2B,MT2A,MTI3A,MT2B	OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
21607	14617083	Miyoshi,K., Ito,Y., Serizawa,A. and Kurata,N.	OsHAP3 genes regulate chloroplast biogenesis in rice.	Plant J.	36(4)	532-540	2003	HAP3B,HAP3A,HAP3C	OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B
21608	14711998	Miyoshi,K., Ahn,B.O., Kawakatsu,T., Ito,Y., Itoh,J., Nagato,Y. and Kurata,N.	PLASTOCHRON1, a timekeeper of leaf initiation in rice, encodes cytochrome P450.	Proc. Natl. Acad. Sci. U.S.A.	101(3)	875-880	2004	PLA1	pla1, OsPLA1, plt1, CYP78A11
21609	1478924	Mizuno,K., Kimura,K., Arai,Y., Kawasaki,T., Shimada,H. and Baba,T.	Starch branching enzymes from immature rice seeds.	J. Biochem.	112(5)	643-651	1992	SBE4,SBE1	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
21610	8360192	Mizuno,K., Kawasaki,T., Shimada,H., Satoh,H., Kobayashi,E., Okumura,S., Arai,Y. and Baba,T.	Alteration of the structural properties of starch components by the lack of an isoform of starch branching enzyme in rice seeds.	J. Biol. Chem.	268(25)	19084-19091	1993	SBE3,AE	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,ae
21611	14634153	Mizuno,K., Iida,T., Takano,A., Yokoyama,M. and Fujimura,T.	A new 9-lipoxygenase cDNA from developing rice seeds.	Plant Cell Physiol.	44(11)	1168-1175	2003	R9-LOX1	Osr9-LOX1, OsLOX3, LOX3
21612	1326298	Mochizuki,K., Umeda,M., Ohtsubo,H. and Ohtsubo,E.	Characterization of a plant SINE, p-SINE1, in rice genomes.	Jpn. J. Genet.	67(2)	155-166	1992	_,_,_,_,_,_,_	p-SINE1-r3,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r7,p-SINE1-r2,p-SINE1-r4,p-SINE1-r5,p-SINE1-r6
21613	10394955	Moon,Y.H., Jung,J.Y., Kang,H.G. and An,G.	Identification of a rice APETALA3 homologue by yeast two-hybrid screening.	Plant Mol. Biol.	40(1)	167-177	1999	SPW1,MADS4	SPW1, spw1, MADS16, OsMADS16,OsMADS4, PI1
21614	10444103	Moon,Y.H., Kang,H.G., Jung,J.Y., Jeon,J.S., Sung,S.K. and An,G.	Determination of the motif responsible for interaction between the rice APETALA1/AGAMOUS-LIKE9 family proteins using a yeast two-hybrid system.	Plant Physiol.	120(4)	1193-1204	1999	MADS17,MADS18,RAP1B,RAP1A,MFO1	OsMADS17, NMADS3, RMADS213, nmads3,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS6, MADS6, OsMFO1
21615	14572664	Moons,A.	Osgstu3 and osgtu4, encoding tau class glutathione S-transferases, are heavy metal- and hypoxic stress-induced and differentially salt stress-responsive in rice roots.	FEBS Lett.	553(3)	427-432	2003	GSTU4,GSTU3	OsGSTU4,OsGSTU3, OsGSTU29, GSTU29
21616	14572653	Moons,A.	Ospdr9, which encodes a PDR-type ABC transporter, is induced by heavy metals, hypoxic stress and redox perturbations in rice roots.	FEBS Lett.	553(3)	370-376	2003	PDR9	OsPDR9, ospdr9, OsPDR3, PDR3
21617	9218720	Moons,A., Keyser,A. and Montagu,M.	A group 3 LEA cDNA of rice, responsive to abscisic acid, but not to jasmonic acid, shows variety-specific differences in salt stress response.	Gene	191(2)	197-204	1997	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
21618	12060225	Morello,L., Bardini,M., Sala,F. and Breviario,D.	A long leader intron of the Ostub16 rice beta-tubulin gene is required for high-level gene expression and can autonomously promote transcription both in vivo and in vitro.	Plant J.	29(1)	33-44	2002	TUB4	OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
21619	1581574	Mori,H., Higo,K., Higo,H., Minobe,Y., Matsui,H. and Chiba,S.	Nucleotide and derived amino acid sequence of a catalase cDNA isolated from rice immature seeds.	Plant Mol. Biol.	18(5)	973-976	1992	CATA	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
21620	15939553	Mori,Y., Yamamoto,T., Sakaguchi,N., Ishibashi,T., Furukawa,T., Kadota,Y., Kuchitsu,K., Hashimoto,J., Kimura,S. and Sakaguchi,K.	Characterization of the origin recognition complex (ORC) from a higher plant, rice (Oryza sativa L.).	Gene	353(1)	23-30	2005	ORC5,ORC2,ORC3,ORC4	OsORC5,OsORC2,OsORC3,OsORC4
21621	15659629	Moriguchi,K., Suzuki,T., Ito,Y., Yamazaki,Y., Niwa,Y. and Kurata,N.	Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations.	Plant Cell	17(2)	389-403	2005	_,_,_,_,SCL30B,_,NCED1,_	NALP1,OsNMCP1a,OsAHP1,,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,OsSAD1, SAD1, OsSUN2, SUN2,OsNCED1, OsCCD4a, CCD4a,OsRH5
21622		Morioka,S., Ueki,J. and Komari,T.	Characterization of two distinctive genomic clones (Accession Nos. AB001919 and AB001920) for phospholipase D from rice (PGR97-076)	Plant Physiol.	114(1)	396	1997	PLDALPHA3,PLDalpha1	OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2,RPLD1, PLD1, OsPLDalpha1
21623	8058828	Morita,S., Tasaka,M., Fujisawa,H., Ushimaru,T. and Tsuji,H.	A cDNA clone encoding a rice catalase isozyme.	Plant Physiol.	105(3)	1015-1016	1994	CATB	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
21625	15792960	Moritoh,S., Miki,D., Akiyama,M., Kawahara,M., Izawa,T., Maki,H. and Shimamoto,K.	RNAi-mediated Silencing of OsGEN-L (OsGEN-like), a New Member of the RAD2/XPG Nuclease Family, Causes Male Sterility by Defect of Microspore Development in Rice.	Plant Cell Physiol.	46(5)	699-715	2005	RAD	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 
21626	7565598	Moriyama,H., Nitta,T. and Fukuhara,T.	Double-stranded RNA in rice: a novel RNA replicon in plants.	Mol. Gen. Genet.	248(3)	364-369	1995		
21627	15656983	Morsy,M.R., Almutairi,A.M., Gibbons,J., Yun,S.J. and B.G.	The OsLti6 genes encoding low-molecular-weight membrane proteins are differentially expressed in rice cultivars with contrasting sensitivity to low temperature.	Gene	344	171-180	2005	DREB1D,_,_	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6
21628	9177027	Muench,D.G., Wu,Y., Zhang,Y., Li,X., Boston,R.S. and Okita,T.W.	Molecular cloning, expression and subcellular localization of a BiP homolog from rice endosperm tissue.	Plant Cell Physiol.	38(4)	404-412	1997	_	OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
21629	15079051	Mukhopadhyay,A., Vij,S. and Tyagi,A.K.	Overexpression of a zinc-finger protein gene from rice confers tolerance to cold, dehydration, and salt stress in transgenic tobacco.	Proc. Natl. Acad. Sci. U.S.A.	101(16)	6309-6314	2004	SAP1	Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1
21630	2973410	Mundy,J. and Chua,N.H.	Abscisic acid and water-stress induce the expression of a novel rice gene.	EMBO J.	7(8)	2279-2286	1988	RAB16A,RAB16C,RAB16D,RAB16B	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA27, rab16C,rab21, OsLEA26, Rab16D, OsRab16,rab21, OsLEA28, OsRAB16D, OsRAB16b
21631	14634161	Murakami,M., Ashikari,M., Miura,K., Yamashino,T. and Mizuno,T.	The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm.	Plant Cell Physiol.	44(11)	1229-1236	2003	HD2,TOC1,PRR73,PRR95,PRR59	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38
21632	15725670	Murakami,M., Matsushika,A., Ashikari,M., Yamashino,T. and Mizuno,T.	Circadian-Associated Rice Pseudo Response Regulators (OsPRRs): Insight into the Control of Flowering Time.	Biosci. Biotechnol. Biochem.	69(2)	410-414	2005	HD2,TOC1,PRR73,PRR59,PRR95	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33
21633	14716315	Nagaki,K., Cheng,Z., Ouyang,S., Talbert,P.B., Kim,M., Jones,K.M., Henikoff,S., Buell,C.R. and Jiang,J.	Sequencing of a rice centromere uncovers active genes.	Nat Genet	36(2)	138-145	2004	CENH3	CENH3, CenH3
21634	9501993	Nagasaki,H., Yamamoto,K., Shomura,A., Koga-ban,Y., Takasuga,A., Yano,M., Minobe,Y. and Sasaki,T.	Rice class III chitinase homologues isolated by random cloning of rice cDNAs.	DNA Res.	4(6)	379-385	1997	_,_,_,_,_,RIXI ,_	C00481,C10923,C10150,C10501,C10122,C10701,C10728, OsChib3a 
21635	12506001	Nagasawa,N., Miyoshi,M., Sano,Y., Satoh,H., Hirano,H., Sakai,H. and Nagato,Y.	SUPERWOMAN1 and DROOPING LEAF genes control floral organ identity in rice.	Development	130(4)	705-718	2003	DL,SPW1	DL, dl(lop), lop, dl, dl1,SPW1, spw1, MADS16, OsMADS16
21636	14701929	Nahm,M.Y., Kim,S.W., Yun,D., Lee,S.Y., Cho,M.J. and Bahk,J.D.	Molecular and Biochemical Analyses of OsRab7, a Rice Rab7 Homolog.	Plant Cell Physiol.	44(12)	1341-1349	2003	_	OsRab7B3, Rab7B3, OsRab7, Rab7
21637	8820608	Nakagawa,H., Ohmiya,K. and Hattori,T.	A rice bZIP protein, designated OSBZ8, is rapidly induced by abscisic acid.	Plant J.	9(2)	217-227	1996	OSBZ8	OsBZ8, OsbZIP05
21638		Nakai,K., Inagaki,Y., Nagata,H., Miyazaki,C. and Iida,S.	Molecular characterization of the gene for dihydroflavonol 4-reductase of Japonica rice varieties	Plant Biotechnol.	15(4)	221-225	1998	RD	Rd, DFR, OsDFR, OS-DFR
21639	8616263	Nakamura,H., Satoh,W., Hidaka,S., Kagaya,Y., Ejiri,S. and Tsutsumi,K.	Genomic structure of the rice aldolase isozyme C-1 gene and its regulation through a Ca 2+ -mediated protein kinase-phosphatase pathway.	Plant Mol. Biol.	30(2)	381-385	1996	ALDCA,_,ALDP,ALDC1	AldC-a,GSC 233, AldC-2,Aldo, OsALDO, ALDO,AldC-1
21640	7770536	Nakamura,I., Kameya,N., Aoki,T., Tada,T., Norita,E., Kanzaki,H. and Uchimiya,H.	Nucleotide sequence of a rice cDNA encoding a homolog of the eukaryotic ribosomal protein S8.	Plant Physiol.	107(4)	1463-1464	1995	RPS8	S8
21641	9193078	Nakamura,T., Yokota,S., Muramoto,Y., Tsutsui,K., Oguri,Y., Fukui,K. and Takabe,T.	Expression of a betaine aldehyde dehydrogenase gene in rice, a glycinebetaine nonaccumulator, and possible localization of its protein in peroxisomes.	Plant J.	11(5)	1115-1120	1997	BAD1	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
21642	10095115	Nakamura,T., Yamaguchi,Y. and Sano,H.	Four rice genes encoding cysteine synthase: isolation and differential responses to sulfur, nitrogen and light.	Gene	229(1-2)	155-161	1999	RCS2,RCS1,RCS4,RCS3	rcs2,rcs1,rcs4,rcs3
21643	12147736	Nakamura,T., Meyer,C. and Sano,H.	Molecular cloning and characterization of plant genes encoding novel peroxisomal molybdoenzymes of the sulphite oxidase family.	J. Exp. Bot.	53(375)	1833-1836	2002	_	OsMCP, MCP, OsSO1, SO1
21644	16669000	Nakamura,Y. and Yamanouchi,H.	Nucleotide sequence of a cDNA encoding starch-branching enzyme, or Q-enzyme I, from rice endosperm	Plant Physiol.	99(3)	1265-1266	1992	SBE3,SBE1,SBE4	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
21645	8680309	Nakamura,Y., Umemoto,T., Ogata,N., Kuboki,Y., Yano,M. and Sasaki,T.	Starch debranching enzyme (R-enzyme or pullulanase) from developing rice endosperm: purification, cDNA and chromosomal localization of the gene.	Planta.	199(2)	209-218	1996	PUL	OsPUL, SDBE, OsPUL3, RE
21646	16027975	Nakamura,Y., Francisco,P.B.,Jr., Hosaka,Y., Sato,A., Sawada,T., Kubo,A. and Fujita,N.	Essential amino acids of starch synthase IIa differentiate amylopectin structure and starch quality between japonica and indica rice varieties.	Plant Mol. Biol.	58(2)	213-227	2005	ALK	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
21647	8666249	Nakase,M., Hotta,H., Adachi,T., Aoki,N., Nakamura,R., Masumura,T., Tanaka,K. and Matsuda,T.	Cloning of the rice seed alpha-globulin-encoding gene: sequence similarity of the 5'-flanking region to those of the genes encoding wheat high-molecular-weight glutenin and barley D hordein.	Gene	170(2)	223-226	1996	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77
21648	8980514	Nakase,M., Yamada,T., Kira,T., Yamaguchi,J., Aoki,N., Nakamura,R., Matsuda,T. and Adachi,T.	The same nuclear proteins bind to the 5'-flanking regions of genes for the rice seed storage protein: 16 kDa albumin, 13 kDa prolamin and type II glutelin.	Plant Mol. Biol.	32(4)	621-630	1996	_,GLU2,_,_	CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,Glu2*(Gt1), Gt1, Glu2,PG5b, Prol-08, pro13b.14,RA17, RAP, RAG1, OsEnS-97
21649	9049271	Nakase,M., Aoki,N., Matsuda,T. and Adachi,T.	Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter.	Plant Mol. Biol.	33(3)	513-522	1997	REB	OsZIP33, RISBZ2, OsbZIP33
21651		Nakazaki,T. and Ikehashi,H.	Genomic sequence and polymorphisms of a rice chitinase gene, Cht4	Breeding Science	48(4)	371-376	1998	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3
21654	12520304	Nakazaki,T., Okumoto,Y., Horibata,A., Yamahira,S., Teraishi,M., Nishida,H., Inoue,H. and Tanisaka,T.	Mobilization of a transposon in the rice genome.	Nature	421(6919)	170-172	2003	SLG,MPING	slg, Rurm1, Urm1,mPing
21655	10664124	Nakazono,M., Imamura,T., Tsutsumi,N., Sasaki,T. and Hirai,A.	Characterization of two cDNA clones encoding isozymes of the F(1)F(0)-ATPase inhibitor protein of rice mitochondria.	Planta.	210(2)	188-194	2000	_,_	IF1-1,IF1-2
21656	11027709	Nakazono,M., Tsuji,H., Li,Y., Saisho,D., Arimura,S., Tsutsumi,N. and Hirai,A.	Expression of a gene encoding mitochondrial aldehyde dehydrogenase in rice increases under submerged conditions.	Plant Physiol.	124(2)	587-598	2000	ALDH2A	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  
21657	3267237	Nandabalan,K. and Padayatty,J.D.	Putative termination sites for rDNA transcription in rice.	Biochem. Biophys. Res. Commun.	157(1)	68-74	1988	25S rRNA	25S rRNA
21658	2543387	Nandabalan,K. and Padayatty,J.D.	Initiation of transcription of rDNA in rice.	Biochem. Biophys. Res. Commun.	160(3)	1117-1123	1989	18S rRNA	18S  rRNA
21659	8940135	Nantel,A. and Quatrano,R.S.	Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity.	J. Biol. Chem.	271(49)	31296-31305	1996	ZIP1,ZIP2,_,ZIP2A,ZIP1A	OsZIP1,OsZIP2, OsZIP11, ZIP11 ,OsZIP-2b,OsbZIP80, OsZIP-2a,OsbZIP86, OsZIP-1a
21660	8049366	Nelson,A.J., Doerner,P.W., Zhu,Q. and Lamb,C.J.	Isolation of a monocot 3-hydroxy-3-methylglutaryl coenzyme A reductase gene that is elicitor-inducible.	Plant Mol. Biol.	25(3)	401-412	1994	_	HMGR I, Hmg1, HMGR1, HMGR 1, OsHMGR1
21661	15280039	Nemoto,T., Cho,E.M., Okada,A., Okada,K., Otomo,K., Kanno,Y., Toyomasu,T., Mitsuhashi,W., Sassa,T., Minami,E., Shibuya,N., Nishiyama,M., Nojiri,H. and Yamane,H.	Stemar-13-ene synthase, a diterpene cyclase involved in the biosynthesis of the phytoalexin oryzalexin S in rice.	FEBS Lett.	571(1-3)	182-186	2004	CPS2,KS8,CPS4	OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4
21662	8148649	Nieto-Sotelo,J., Ichida,A. and Quail,P.H.	PF1: an A-T hook-containing DNA binding protein from rice that interacts with a functionally defined d(AT)-rich element in the oat phytochrome A3 gene promoter.	Plant Cell	6(2)	287-301	1994	_	Os-PF1, PF1
21663	8062823	Ninnemann,O., Jauniaux,J.C. and Frommer,W.B.	Identification of a high affinity NH4+ transporter from plants.	EMBO J.	13(15)	3464-3471	1994	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
21664	8388748	Nishi,R., Hashimoto,H., Kidou,S., Uchimiya,H. and Kato,A.	Isolation and characterization of a rice cDNA which encodes a ubiquitin protein and a 52 amino acid extension protein.	Plant Mol. Biol.	22(1)	159-161	1993	_,RUBI3	ZIURP1, Ub-CEP52-1,rubi3, UBQ3
21665	8218399	Nishi,R., Hashimoto,H., Uchimiya,H. and Kato,A.	The primary structure of two proteins from the small ribosomal subunit of rice.	Biochim. Biophys. Acta	1216(1)	113-114	1993	RPS20,RPS21	rps20,rps21
21666	8373808	Nishi,R., Kidou,S., Uchimiya,H. and Kato,A.	Isolation and characterization of a rice cDNA which encodes the eukaryotic initiation factor 4A.	Biochim. Biophys. Acta	1174(3)	293-294	1993	EIF4A1	eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21667	8218398	Nishi,R., Kidou,S., Uchimiya,H. and Kato,A.	The primary structure of two proteins from the large ribosomal subunit of rice.	Biochim. Biophys. Acta	1216(1)	110-112	1993	RPL7A,RPL3A	OsRPL7A,OsRPL3A, ARP1, ARP3
21668	12000455	Nishimura,A., Ito,M., Kamiya,N., Sato,Y. and Matsuoka,M.	OsPNH1 regulates leaf development and maintenance of the shoot apical meristem in rice.	Plant J.	30(2)	189-201	2002	AGO1C,PNH1	OsAGO1c, OsAGO1, AGO1, AGO1c,OsPNH1
21670	7901749	Nishizawa,Y., Kishimoto,N., Saito,A. and Hibi,T.	Sequence variation, differential expression and chromosomal location of rice chitinase genes.	Mol. Gen. Genet.	241(1-2)	1-10	1993	CHT2,CHT1,CHT3	Cht2*, Cht2, RC7, OsChia1b, Chia1b,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11
21671	9339541	Noma,K., Nakajima,R., Ohtsubo,H. and Ohtsubo,E.	RIRE1, a retrotransposon from wild rice Oryza australiensis.	Genes Genet. Syst.	72(3)	131-140	1997	RIRE1	RIRE1, Osr11, Rire1
21672	15031413	Nonomura,K., Nakano,M., Fukuda,T., Eiguchi,M., Miyao,A., Hirochika,H. and Kurata,N.	The Novel Gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of Rice Encodes a Putative Coiled-Coil Protein Required for Homologous Chromosome Pairing in Meiosis.	Plant Cell	16(4)	1008-1020	2004	PAIR1	Pair1
21673	16410547	Nonomura,K., Nakano,M., Eiguchi,M., Suzuki,T. and Kurata,N.	PAIR2 is essential for homologous chromosome synapsis in rice meiosis I.	J. Cell Sci.	119(PT 2)	217-225	2006	PAIR2	Pair2, OsPAIR2, OsASY1
21674	12897248	Nonomura,K.I., Miyoshi,K., Eiguchi,M., Suzuki,T., Miyao,A., Hirochika,H. and Kurata,N.	The MSP1 Gene Is Necessary to Restrict the Number of Cells Entering into Male and Female Sporogenesis and to Initiate Anther Wall Formation in Rice.	Plant Cell	15(8)	1728-1739	2003	MSP1	Msp1, OsMSP1
21675	8722567	Nozue,F., Umeda,M., Nagamura,Y., Minobe,Y. and Uchimiya,H.	Characterization of cDNA encoding for phosphoglucose isomerase of rice (Oryza sativa L.).	DNA Seq.	6(3)	127-135	1996	PGI2,PGI1	Pgi2(Pgib), Pgib, Pgi_2, Pgi2, GPI-B, PGI-B, PHI-B, Pgi-b, PGI-b,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a
21676	2370848	O'Neill,S.D., Kumagai,M.H., Majumdar,A., Huang,N., Sutliff,T.D. and Rodriguez,R.L.	The alpha-amylase genes in Oryza sativa: characterization of cDNA clones and mRNA expression during seed germination.	Mol. Gen. Genet.	221(2)	235-244	1990	AMY1A	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A
21677	10713441	Ogawa,M., Kusano,T., Katsumi,M. and Sano,H.	Rice gibberellin-insensitive gene homolog, OsGAI, encodes a nuclear-localized protein capable of gene activation at transcriptional level.	Gene	245(1)	21-29	2000	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
21678	15527966	Oguchi,K., Tamura,K. and Takahashi,H.	Characterization of Oryza sativa telomerase reverse transcriptase and possible role of its phosphorylation in the control of telomerase activity.	Gene	342(1)	57-66	2004	TERT	OsTERT
21679	11470506	Oguchi,S., Sassa,H. and Hirano,H.	OsPAA2, a distinct alpha 1 subunit gene for the 20S proteasome in rice (Oryza sativa L.).	Gene	272(1-2)	19-23	2001	_,_	OsPAA2, PAA2,OsPAA1, PAA1
21680	16202241	Oh,S.H., Choi,W.G., Lee,I.T. and Yun,S.J.	Cloning and characterization of a rice cDNA encoding glutamate decarboxylase.	J. Biochem. Mol. Biol.	38(5)	595-601	2005	GAD2,GAD1	OsGAD2,OsGAD1, GDC
21681	10778756	Ohba,H., Steward,N., Kawasaki,S., Berberich,T., Ikeda,Y., Koizumi,N., Kusano,T. and Sano,H.	Diverse response of rice and maize genes encoding homologs of WPK4, an SNF1-related protein kinase from wheat, to light, nutrients, low temperature and cytokinins.	Mol. Gen. Genet.	263(2)	359-366	2000	CBL4,CBL2,CBL5,CBL1,CBL3,CBL7,CBL6,PK7,PK4,CBL8	OsCBL4, SOS3, OsSOS3,OsCBL2,OsCBL5,OsCBL1, Os-CBL1,OsCBL3,OsCBL7,OsCBL6,OsPK7, OsPK07, OsCIPK12, CIPK12,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19,OsCBL8
21682	8685273	Ohmori,K., Doyama,N. and Ida,S.	Molecular cloning of a rice leaf ferredoxin cDNA (Accession No. D30763). (PGR 96-025)	Plant Physiol.	111(1)	348	1996	_	Fd1, OsFd1, ADI1
21683	1597177	Ohta,H., Shirano,Y., Tanaka,K., Morita,Y. and Shibata,D.	cDNA cloning of rice lipoxygenase L-2 and characterization using an active enzyme expressed from the cDNA in Escherichia coli.	Eur. J. Biochem.	206(2)	331-336	1992	LOX-L2	OsLOX-L2, LOX1.1, LOX L-2, LOX-2
21684	11487705	Ohta,M., Matsui,K., Hiratsu,K., Shinshi,H. and Ohme-Takagi,M.	Repression domains of class II ERF transcriptional repressors share an essential motif for active repression.	Plant Cell	13(8)	1959-1968	2001	ERF3	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
21685	11250078	Ohtsu,K., Nakazono,M., Tsutsumi,N. and Hirai,A.	Characterization and expression of the genes for cytochrome c oxidase subunit VIb (COX6b) from rice and Arabidopsis thaliana.	Gene	264(2)	233-239	2001	_,_	OsCOX6b2, COX6b2, OsCOX6b-2, COX6b-2,OsCOX6b1, COX6b1, OsCOX6b-1, COX6b-1
21686	16208489	Ohtsu,K., Hirano,H.Y., Tsutsumi,N., Hirai,A. and Nakazono,M.	Anaconda, a new class of transposon belonging to the Mu superfamily, has diversified by acquiring host genes during rice evolution.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	274(6)	606-615	2005	ANACB14	AnacB14
21687	10586517	Ohtsubo,H., Kumekawa,N. and Ohtsubo,E.	RIRE2, a novel gypsy-type retrotransposon from rice.	Genes Genet. Syst.	74(3)	83-91	1999	_,_,_,_,_,RIRE8B,RIRE8A,RIRE3,RIRE2	GAG-POL, orf1,GAG-POL, orf2,orf3, orf3',orf4, orf4',orf5, orf5',RIRE8B,RIRE8A,RIRE3,RIRE2, Osr26, Rire2, Retrosat2
21688	15969500	Ohtsubo,S., Kobayashi,H., Noro,W., Taniguchi,M. and Saitoh,E.	Molecular Cloning and Characterization of Oryzacystatin-III, a Novel Member of Phytocystatin in Rice (Oryza sativa L. japonica).	J. Agric. Food Chem.	53(13)	5218-5224	2005	OC2,OC1	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
21689	1377969	Okagaki,R.J.	Nucleotide sequence of a long cDNA from the rice waxy gene.	Plant Mol. Biol.	19(3)	513-516	1992	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21690	2745459	Okita,T.W., Hwang,Y.S., Hnilo,J., Kim,W.T., Aryan,A.P., Larson,R. and Krishnan,H.B.	Structure and expression of the rice glutelin multigene family.	J. Biol. Chem.	264(21)	12573-12581	1989	GLU3,GLU1,GLU2	Glu3*(Gt3), Gt3, Glu3, ,Glu1(Srp1, Gt2), Srp, Gt2, Glu1,Glu2*(Gt1), Gt1, Glu2
21691	12040100	Okushima,Y., Koizumi,N., Yamaguchi,Y., Kimata,Y., Kohno,K. and Sano,H.	Isolation and Characterization of a Putative Transducer of Endoplasmic Reticulum Stress in Oryza sativa.	Plant Cell Physiol.	43(5)	532-539	2002	IRE1	IRE1, OsIRE1, OsIre1
21692	12399401	Olsen,K.M. and Purugganan,M.D.	Molecular Evidence on the Origin and Evolution of Glutinous Rice.	Genetics	162(2)	941-950	2002	WX1,_	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2
21693	16164597	Onai,K. and Ishiura,M.	PHYTOCLOCK 1 encoding a novel GARP protein essential for the Arabidopsis circadian clock.	Genes Cells	10(10)	963-972	2005	PCL1	OsPCL1
21694	11133985	Onodera,Y., Suzuki,A., Wu,C., Washida,H. and Takaiwa,F.	A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif	J. Biol. Chem.	276(17)	14139-14152	2001	RISBZ1,RITA1,REB,RISBZ4,RISBZ5	OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsbZIP20, RITA-1, RISBZ3,OsZIP33, RISBZ2, OsbZIP33,OsbZIP15,OsbZIP52
21695	7697296	Ookura,T., Wada,M., Sakakibara,Y., Jeong,K.H., Maruta,I., Kawamura,Y. and Kasamo,K.	Identification and characterization of a family of genes for the plasma membrane H(+)-ATPase of Oryza sativa L.	Plant Cell Physiol.	35(8)	1251-1256	1994	AHA2	OSA2, OsA2, osAHA2, AHA2, OsPMA2
21696	15388982	Otomo,K., Kanno,Y., Motegi,A., Kenmoku,H., Yamane,H., Mitsuhashi,W., Oikawa,H., Toshima,H., Itoh,H., Matsuoka,M., Sassa,T. and Toyomasu,T.	Diterpene cyclases responsible for the biosynthesis of phytoalexins, momilactones a, B, and oryzalexins a-f in rice.	Biosci. Biotechnol. Biochem.	68(9)	2001-2006	2004	KSL10,KS4	OsKSL10, KS10, OsKS10, OsTPS33,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16
21697	15341631	Otomo,K., Kenmoku,H., Oikawa,H., Konig,W.A., Toshima,H., Mitsuhashi,W., Yamane,H., Sassa,T. and Toyomasu,T.	Biological functions of ent- and syn-copalyl diphosphate synthases in rice: key enzymes for the branch point of gibberellin and phytoalexin biosynthesis.	Plant J.	39(6)	886-893	2004	CPS1,CPS2,CPS4	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4
21698	12242506	Panaud,O., Vitte,C., Hivert,J., Muzlak,S., Talag,J., Brar,D. and Sarr,A.	Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(1)	113-121	2002	RIRE3,RIRE8,_,_,_,_,_,RIRE2	RIRE3,RIRE8, Osr33, Rire8,Retrosat1,hipa,houba,hopi,dagul,RIRE2, Osr26, Rire2, Retrosat2
21700	12569425	Panstruga,R.	Molecular phylogeny and evolution of the plant-specific seven- transmembrane MLO family	J. Mol. Evol.	56(1)	77-88	2003	MLO_,MLO_,MLO_	OsMLO4, OsMLO1, MLO1,OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3,OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6
21701	11911477	Park,H.Y., Pan,C.H., So,M.Y., Ah,J.H., Jo,D.H. and Kim,S.I.	Purification, characterization, and cDNA cloning of rice class III chitinase.	Mol. Cells	13(1)	69-76	2002	_	RCB4
21704	15232225	Park,Y.J., Dixit,A., Yoo,J.W. and Bennetzen,J.	Further evidence of microcolinearity between barley and rice genomes at two orthologous regions.	Mol. Cells	17(3)	492-502	2004		
21705	12271140	Paszkowski,U., Kroken,S., Roux,C. and Briggs,S.P.	Rice phosphate transporters include an evolutionarily divergent gene specifically activated in arbuscular mycorrhizal symbiosis.	Proc. Natl. Acad. Sci. U.S.A.	99(20)	13324-13329	2002	PT4,PT12,PT11,PT9,PT2,PT10,PT5,PT13,PT7,PT6,PT1,PT3,PT8	OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT12, PHT1-12, OsPht1;12,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsPT9, PHT1-9, OsPht1;9,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPT10, PHT1-10, OsPht1;10,OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,OsPT7, PHT1-7, OsPht1;7,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT8, PHT1-8, OsPht1;8, Pht1;8
21706	15233790	Peng,R., Yao,Q., Xiong,A., Fan,H., Li,X., Peng,Y., Cheng,Z.M. and Li,Y.	A new rice zinc-finger protein binds to the O2S box of the alpha-amylase gene promoter.	Eur. J. Biochem.	271(14)	2949-2955	2004	_	RAMY
21707	7508918	Peng,Y.L., Shirano,Y., Ohta,H., Hibino,T., Tanaka,K. and Shibata,D.	A novel lipoxygenase from rice. Primary structure and specific expression upon incompatible infection with rice blast fungus.	J. Biol. Chem.	269(5)	3755-3761	1994	LOX-RLL,_	OsLOX-RLL,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
21708	7493934	Peng,Z. and Verma,D.P.	A rice HAL2-like gene encodes a Ca(2+)-sensitive 3'(2'),5'-diphosphonucleoside 3'(2')-phosphohydrolase and complements yeast met22 and Escherichia coli cysQ mutations.	J. Biol. Chem.	270(49)	29105-29110	1995	_	RHL
21709	3026911	Peng,Z.G. and Wu,R.	A simple and rapid nucleotide sequencing strategy and its application in analyzing a rice histone 3 gene.	Gene	45(3)	247-252	1986	_	H3
21710	10080693	Postma-Haarsma,A.D., Verwoert,I.I., Stronk,O.P., Koster,J., Lamers,G.E., Hoge,J.H. and Meijer,A.H.	Characterization of the KNOX class homeobox genes Oskn2 and Oskn3 identified in a collection of cDNA libraries covering the early stages of rice embryogenesis.	Plant Mol. Biol.	39(2)	257-271	1999	OSH15,OSKN2	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
21711	12676326	Prasad,K., Kushalappa,K. and Vijayraghavan,U.	Mechanism underlying regulated expression of RFL, a conserved transcription factor, in the developing rice inflorescence.	Mech. Dev.	120(4)	491-502	2003	RFL	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 
21712	1620614	Prestle,J., Schonfelder,M., Adam,G. and Mundry,K.W.	Type 1 ribosome-inactivating proteins depurinate plant 25S rRNA without species specificity.	Nucleic Acids Res.	20(12)	3179-3182	1992	_	
21713	15542489	Prisic,S., Xu,M., Wilderman,P.R. and Peters,R.J.	Rice Contains Two Disparate ent-Copalyl Diphosphate Synthases with Distinct Metabolic Functions.	Plant Physiol.	136(4)	4228-4236	2004	CPS1,CPS2	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2
21714	10341448	Pysh,L.D., Wysocka-Diller,J.W., Camilleri,C., Bouchez,D. and Benfey,P.N.	The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.	Plant J.	18(1)	111-119	1999	HAM1	OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9
21715	15088147	Qi,Y., Yamauchi,Y., Ling,J., Kawano,N., Li,D. and Tanaka,K.	Cloning of a putative monogalactosyldiacylglycerol synthase gene from rice (Oryza sativa L.) plants and its expression in response to submergence and other stresses.	Planta.	219(3)	450-458	2004	_	OsMGD, MGD
21716	15645304	Qi,Y., Kawano,N., Yamauchi,Y., Ling,J., Li,D. and Tanaka,K.	Identification and cloning of a submergence-induced gene OsGGT (glycogenin glucosyltransferase) from rice (Oryza sativa L.) by suppression subtractive hybridization.	Planta.	221(3)	437-445	2005	GGT	OsGGT
21718		Qiu,Y., Jing,S., Fu,J., Li,L. and Yu,D.	Cloning and analysis of expression profile of 13 WRKY genes in rice	Chin. Sci. Bull.	49	2159-2168	2004	WRKY15,WRKY28,WRKY69,WRKY83,WRKY40,WRKY33,WRKY20,WRKY81,WRKY94,WRKY86,WRKY102,WRKY18,WRKY4,WRKY85,WRKY17,WRKY99,WRKY54,WRKY50,WRKY19,WRKY32,WRKY60,WRKY36,WRKY30,WRKY48,WRKY37,WRKY24,WRKY78,WRKY29,WRKY98,WRKY39,WRKY14,WRKY55,WRKY31,WRKY53,WRKY25,WRKY74,WRKY96,WRKY67,WRKY21,WRKY87,WRKY80,WRKY47,WRKY64,WRKY11,WRKY23,WRKY84,WRKY88,WRKY46,WRKY70,WRKY75,WRKY49,WRKY3,WRKY104,WRKY43,WRKY8,WRKY41,WRKY52,WRKY56,WRKY2,WRKY68,WRKY27,WRKY95,WRKY82,WRKY6,WRKY13,WRKY66,WRKY58,WRKY72,WRKY10,WRKY76,WRKY35,WRKY89,WRKY107,WRKY61,WRKY73,WRKY65,WRKY26,WRKY7,WRKY5,WRKY51,WRKY34,WRKY42,WRKY57,WRKY71,WRKY12,WRKY77,WRKY22,WRKY90,WRKY16,WRKY79,WRKY9,WRKY62,WRKY45,WRKY97,WRKY1	OsWRKY15,OsWRKY28,OsWRKY69,OsWRKY83,OsWRKY40,OsWRKY33,OsWRKY20,OsWRKY81, OsWRKY33,OsWRKY94,OsWRKY86, OsaLeg5, Leg5,OsWRKY102,OsWRKY18,OsWRKY4, WRKY122, OsWRKY122,OsWRKY85,OsWRKY17,OsWRKY99,OsWRKY54,OsWRKY50,OsWRKY19,OsWRKY32,OsWRKY60,OsWRKY36,OsWRKY30,OsWRKY48,OsWRKY37,OsWRKY24,OsWRKY78,OsWRKY29,OsWRKY98,OsWRKY39,OsWRKY14,OsWRKY55,OsWRKY31,OsWRKY53, WRKY-53,OsWRKY25, OsWRKY44, WRKY44,OsWRKY74,OsWRKY96,OsWRKY67,OsWRKY21,OsWRKY87, OsSUSIBA2-like,OsWRKY80,OsWRKY47,OsWRKY64,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY23,OsWRKY84,OsWRKY88,OsWRKY46, WRKY91, OsWRKY91,OsWRKY70,OsWRKY75,OsWRKY49,OsWRKY3 ,OsWRKY104,OsWRKY43,OsWRKY8,OsWRKY41,OsWRKY52,OsWRKY56,OsWRKY2,OsWRKY68,OsWRKY27,OsWRKY95,OsWRKY82,OsWRKY6, WRKY-6,OsWRKY13,OsWRKY66,OsWRKY58,OsWRKY72, WRKY-72,OsWRKY10,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY35,OsWRKY89,OsWRKY107,OsWRKY61, OsWRKY103, WRKY103,OsWRKY73,OsWRKY65,OsWRKY26, OsWRKY59,OsWRKY7,OsWRKY5 ,OsWRKY51,OsWRKY34,OsWRKY42, WRKY-42,OsWRKY57,OsWRKY71, WRKY-71,OsWRKY12,OsWRKY77, WRKY-77,OsWRKY22,OsWRKY90,OsWRKY16,OsWRKY79, WRKY-79,OsWRKY9,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY45,OsWRKY97,OsWRKY1, OsWRKY1v2
21719	12972663	Qu,L.J., Chen,J., Liu,M., Pan,N., Okamoto,H., Lin,Z., Li,C., Li,D., Wang,J., Zhu,G., Zhao,X., Chen,X., Gu,H. and Chen,Z.	Molecular cloning and functional analysis of a novel type of Bowman-Birk inhibitor gene family in rice.	Plant Physiol.	133(2)	560-570	2003	RBBI3-2,RBBI2-4,_,_,RBBI2-0,RBBI2-3,RBBI2-1,RBBI2-2,RBBI3-3,RBBI3-1	RBBI3-2,RBBI2-4,Oswip1-2,Oswip1-1,RBBI2-0,RBBI2-3,RBBI2-1,RBBI2-2,RBBI3-3, OsBBPI, BBPI,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4
21720		Qu,L.Q. and Takaiwa,F.	Evaluation of tissue specificity and expression strength of rice seed component gene promoters in transgenic rice	Plant Biotechnol J.	2(2)	113-125	2004	ALAAT,REG2,_,GLUB4,GLU7,SBE1,GLUB1,GLT1,GLB1,_,_,FLO4,_,AGPS2	alaAT, ALT-1, OsAlaAT1, AlaAT1,REG-2,ole18,GluB4, GluB-5,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,GluB1, GluB1-A, GluB-1, OsGluB1,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,Prol-01, CysR10, crP10, pro10.1,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD,Prol-17, OsEnS-88, pro16.2, PROLM24,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
21721	8964022	Qun,W. and Rong-Xiang,F.	Structure and expression of a rice hsp 70 cognate gene	Sci. China, C, Life Sciences	39	291-299	1996	_	HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 
21723	11347904	Raghuvanshi,S., Kelkar,A., Khurana,J.P. and Tyagi,A.K.	Isolation and molecular characterization of the COP1 gene homolog from rice, Oryza sativa L. subsp. Indica var. Pusa Basmati 1.	DNA Res.	8(2)	73-79	2001	PPS	OsWD40-55, OsCOP1, COP1
21724	12834068	Rahman,S., Nakamura,Y., Li,Z., Clarke,B., Fujita,N., Mukai,Y., Yamamoto,M., Regina,A., Tan,Z., Kawasaki,S. and Morell,M.	The sugary-type isoamylase gene from rice and Aegilops tauschii: characterization and comparison with maize and Arabidopsis	Genome	46(3)	496-506	2003	ISA1	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1
21726	12970480	Ramesh,S., Shin,R., Eide,D.J. and Schachtman,D.P.	Differential metal selectivity and gene expression of two zinc transporters from rice	Plant Physiol.	133(1)	126-134	2003	ZIP3,ZIP2,ZIP1	OsZIP3,OsZIP2, OsZIP11, ZIP11 ,OsZIP1
21727	9878846	Reddy,P.M., Kouchi,H. and Ladha,J.K.	Isolation, analysis and expression of homologues of the soybean early nodulin gene GmENOD93 (GmN93) from rice.	Biochim. Biophys. Acta	1443(3)	386-392	1998	ENOD93B,ENOD93A	OsENOD93b,OsENOD93a
21730	2102841	Reece,K.S., McElroy,D. and Wu,R.	Genomic nucleotide sequence of four rice (Oryza sativa) actin genes.	Plant Mol. Biol.	14(4)	621-624	1990	_,_,_,ACT1	RAc3,RAc7,RAc2,act1, AC1, RAC1, RAc1, ACT11, OsACT1
21731	8499615	Reimmann,C. and Dudler,R.	Circadian rhythmicity in the expression of a novel light-regulated rice gene.	Plant Mol. Biol.	22(1)	165-170	1993	LIR1	Lir1, OsLIR1, Os-LIR1
21732	8310049	Reimmann,C. and Dudler,R.	cDNA cloning and sequence analysis of a pathogen-induced thaumatin-like protein from rice (Oryza sativa).	Plant Physiol.	101(3)	1113-1114	1993	PR5	OsPR5, Pir2, PR-5, PR5-1
21733	16653172	Reimmann,C., Ringli,C. and Dudler,R.	Complementary DNA cloning and sequencing of a pathogen-induced putative peroxidase from rice.	Plant Physiol.	100(3)	1611-1612	1992	POX22.3	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9
21735	16155566	Ren,Z.H., Gao,J.P., Li,L.G., Cai,X.L., Huang,W., Chao,D.Y., Zhu,M.Z., Wang,Z.Y., Luan,S. and Lin,H.X.	A rice quantitative trait locus for salt tolerance encodes a sodium transporter.	Nat Genet	37(10)	1141-1146	2005	HKT8	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
21736	9232881	Rivoal,J., Thind,S., Pradet,A. and Ricard,B.	Differential induction of pyruvate decarboxylase subunits and transcripts in anoxic rice seedlings.	Plant Physiol.	114(3)	1021-1029	1997	PDC4	pdc4
21737	9858757	Romero,G.O., Simmons,C., Yaneshita,M., Doan,M., Thomas,B.R. and Rodriguez,R.L.	Characterization of rice endo-beta-glucanase genes (Gns2-Gns14) defines a new subgroup within the gene family.	Gene	223(1-2)	311-320	1998	_,_,_,_,_,_,_,_,_,_,_,_,_	Gns14,Gns2,Gns8,Gns3,Gns9, GNS9,Gns7, OsGns7,OsPR2, PR2, Gns4, OsGLN2,Gns11,Gns12,Gns13,Gns10,Gns6,Gns5, GNS5
21738	10675523	Roosens,N., F., Jacobs,M. and Homble,F.	Characterization of a cDNA encoding a rice mitochondrial voltage-dependent anion channel and its gene expression studied upon plant development and osmotic stress.	Biochim. Biophys. Acta	1463(2)	470-476	2000	_	OSVDAC1, osvdac1, OsVDAC1, VDAC1
21739	11340194	Rossini,L., Cribb,L., Martin,D.J. and Langdale,J.A.	The maize golden2 gene defines a novel class of transcriptional regulators in plants.	Plant Cell	13(5)	1231-1244	2001	_,_	OsGLK1, OsGlk1,OsGLK2, OsGlk2
21740		Rubio,F., Santa-Maria,G.E. and Rodriguez-Navarro,A.	Cloning of Arabidopsis and barley cDNAs encoding HAK potassium transporters in root and shoot cells	Physiol. Plantarum	109(1)	34-43	2000	HAK4	OsHAK4
21741	2103460	S., Hensgens,L.A. and Schilperoort,R.A.	Structure and expression of a light-inducible shoot-specific rice gene.	Plant Mol. Biol.	15(3)	399-406	1990	PSAH	PsaH, GOS5
21742	10929125	Saijo,Y., Hata,S., Kyozuka,J., Shimamoto,K. and Izui,K.	Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants.	Plant J.	23(3)	319-327	2000	WSI18,SALT,RAB16A,RAB16B,CDPK7,CDPK13,LEA3-1	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA28, OsRAB16D, OsRAB16b,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
21743	15514070	Saitoh,K., Onishi,K., Mikami,I., Thidar,K. and Sano,Y.	Allelic Diversification at the C (OsC1) Locus of Wild and Cultivated Rice: Nucleotide Changes Associated With Phenotypes	Genetics	168(2)	997-1007	2004	C	C, Cp, OsC1, Os-C1, OsMyb6, Myb6
21744	8843945	Sakakibara,Y., Kobayashi,H. and Kasamo,K.	Isolation and characterization of cDNAs encoding vacuolar H(+)-pyrophosphatase isoforms from rice (Oryza sativa L.).	Plant Mol. Biol.	31(5)	1029-1038	1996	_,_	OVP2,OVP1
21745	9931464	Sakakibara,Y., Kasamo,K., Kobayashi,H., Kusakabe,I. and Kawasaki,S.	Identification of the gene structure and promoter region of H+-translocating inorganic pyrophosphatase in rice (Oryza sativa L. ).	Biochim. Biophys. Acta	1444(1)	117-124	1999	_	OVP1
21746	2577497	Sakamoto,A., Ogawa,M., Masumura,T., Shibata,D., Takeba,G., Tanaka,K. and Fujii,S.	Three cDNA sequences coding for glutamine synthetase polypeptides in Oryza sativa L.	Plant Mol. Biol.	13(5)	611-614	1989	GS2,GLN1;1,GLN1;2	OsGS2, GLN2, RGS31,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
21747	1623183	Sakamoto,A., Ohsuga,H. and Tanaka,K.	Nucleotide sequences of two cDNA clones encoding different Cu/Zn-superoxide dismutases expressed in developing rice seed (Oryza sativa L.).	Plant Mol. Biol.	19(2)	323-327	1992	SODCC2,SODCC1	Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1
21748	1568478	Sakamoto,A., Okumura,T., Ohsuga,H. and Tanaka,K.	Genomic structure of the gene for copper/zinc-superoxide dismutase in rice.	FEBS Lett.	301(2)	185-189	1992	SODCC2	Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2
21749	8290649	Sakamoto,A., Nosaka,Y. and Tanaka,K.	Cloning and sequencing analysis of a complementary DNA for manganese-superoxide dismutase from rice (Oryza sativa L.).	Plant Physiol.	103(4)	1477-1478	1993	SODA1	SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1
21750	7724677	Sakamoto,A., Okumura,T., Kaminaka,H. and Tanaka,K.	Molecular cloning of the gene (SodCc1) that encodes a cytosolic copper/zinc-superoxide dismutase from rice (Oryza sativa L.).	Plant Physiol.	107(2)	651-652	1995	SODCC1	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1
21751	7821431	Sakamoto,A., Okumura,T., Kaminaka,H., Sumi,K. and Tanaka,K.	Structure and differential response to abscisic acid of two promoters for the cytosolic copper/zinc-superoxide dismutase genes, SodCc1 and SodCc2, in rice protoplasts.	FEBS Lett.	358(1)	62-66	1995	SODCC2,SODCC1	Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1
21752	10487219	Sakamoto,K., Tada,Y., Yokozeki,Y., Akagi,H., Hayashi,N., Fujimura,T. and Ichikawa,N.	Chemical induction of disease resistance in rice is correlated with the expression of a gene encoding a nucleotide binding site and leucine-rich repeats.	Plant Mol. Biol.	40(5)	847-855	1999	RPR1	RPR1*, Rpr1-1, Rpr1
21753	1387558	Sakamoto,M., Shimada,H. and Fujimura,T.	Nucleotide sequence of a cDNA encoding a beta subunit of the mitochondrial ATPase from rice (Oryza sativa).	Plant Mol. Biol.	20(1)	171-174	1992	_	RMtATPb, atpB, AtpB 
21755	11244129	Sakamoto,T., Kobayashi,M., Itoh,H., Tagiri,A., Kayano,T., Tanaka,H., Iwahori,S. and Matsuoka,M.	Expression of a gibberellin 2-oxidase gene around the shoot apex is related to phase transition in rice.	Plant Physiol.	125(3)	1508-1516	2001	GA2OX1	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1
21756	12362332	Salekdeh,G.H., Siopongco,J., Wade,L.J., Ghareyazie,B. and Bennett,J.	Proteomic analysis of rice leaves during drought stress and recovery.	Proteomics	2(9)	1131-1145	2002	_,RNS4,_	IRL,OsRNS4, OsRRP, RNaseDIS,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA
21757	11437252	Sami-Subbu,R., Choi,S.B., Wu,Y., Wang,C. and Okita,T.W.	Identification of a cytoskeleton-associated 120 kDa RNA-binding protein in developing rice seeds.	Plant Mol. Biol.	46(1)	79-88	2001	_,_	,Rp120, OsTSN, TSN 
21758	9061016	Sanmiya,K., Iwasaki,T., Matsuoka,M., Miyao,M. and Yamamoto,N.	Cloning of a cDNA that encodes farnesyl diphosphate synthase and the blue-light-induced expression of the corresponding gene in the leaves of rice plants.	Biochim. Biophys. Acta	1350(3)	240-246	1997	_	OsFPPS1, FPPS1, FPPS, OsFPS
21759	10353221	Sanmiya,K., Ueno,O., Matsuoka,M. and Yamamoto,N.	Localization of farnesyl diphosphate synthase in chloroplasts.	Plant Cell Physiol.	40(3)	348-354	1999	_,_	OsFPPS2, FPPS2,OsFPPS1, FPPS1, FPPS, OsFPS
21760	1715972	Sano,H. and Youssefian,S.	A novel ras-related rgp1 gene encoding a GTP-binding protein has reduced expression in 5-azacytidine-induced dwarf rice.	Mol. Gen. Genet.	228(1-2)	227-232	1991	RGP1	rgp1, OsRab11E2
21761	12795701	Santi,L., Wang,Y., Stile,M.R., Berendzen,K., Wanke,D., Roig,C., Pozzi,C., Muller,K., Muller,J., Rohde,W. and Salamini,F.	The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.	Plant J.	34(6)	813-826	2003	_,_,_,_	OsGBP1, GBP1,OsGBP3, GBP3,OsGBP2, GBP2,OsBBR, BBR, OsGBP4, GBP4
21763	11961544	Sasaki,A., Ashikari,M., Ueguchi-Tanaka,M., Itoh,H., Nishimura,A., Swapan,D., Ishiyama,K., Saito,T., Kobayashi,M., Khush,G.S., Kitano,H. and Matsuoka,M.	Green revolution: A mutant gibberellin-synthesis gene in rice.	Nature	416(6882)	701-702	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
21764	7987417	Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.	Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.	Plant J.	6(4)	615-624	1994	SPDS1,LRT2,TRXH,_,Hb2,ACR5,_,_,RPS5,ENOD93B,RPL19,_,GSTU2,ANT,_,_,_,_,_,_,_,_,_,_,_,_,_,GSTU9,_,ASN,_,GSTU1,GF14F,_,GDH1,IAA10,GF14C,CCR10,GID2,CALB,_,_,_,_,EEF1B,EFTU,_,_,_,_,_,_,_,_,_,CALA,_,_,GRP6,RGP2,_,ISC23,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RPL3A,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,GSTU11,_,_,_,_,_,_,_,_,_,_,_,_,_,PGI1,CYP20-2,RLCK268,XTH11,_,_,_,AKR2,_,_,_,_,_,_,TUBA3,_,MT2A,GMPS1,_,RPS28 ,_,_,RPS24,RPL17,UBQ5,PDC1,RPS25,_,RPL2,_,RPL5,RPL31,SODCC2,RFA2,CC1,_,_,_,GS2,UBL40-2,_,GSTF5,_,_,ALDC1,_,CPD2B,_,VALRS1,OCP,_,_,_,_,_,_,PGK4,_,CTHSP70-1,PGK2,_,_,APX7,UGP1,_,MT2B,Hb1,_,_,_,_,_,SODCC1,_,GLT1,GLN1;1,_,RACK1,_,_,_,EIF4A1,_,GF14B,_,_,ADH1,TPI,GRP3	OsSPDS1, OsSPDS, SPDS,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,OsACR5,RPL12, RPL10, OsRPL12, OsRPL10,RAc2,RPS5A,OsENOD93b,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,,OsGSTU2, ParC,ant, ricANC1, ANC1,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,,,,,,,,,OsARFA1f, ARFA1f,OsARFA1d, ARFA1d,OsARFA1a, ARFA1a,,OsGSTU9,OsLP, PR-5, 14b,OsASN2, OsAS, OsAS2, AS2,OsEno2, Eno2,OsGSTU1,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,OsSAHH, SAHH,OsGDH1,OsIAA10, OsIAA5,GF14c, OsGF14c, 14-3-3c,OsCCR10, CCR10,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,OsCPn60beta2, OsCPn60b2,OsPBE1,,BIP108,eEF-1beta, EF-1beta,tufA, EF-Tu,GSC 233, AldC-2,,,,,,,OsGapC1,Fd, OsFd4, Fd4,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCycC_1, CycC_1,GRP162,OsGRP6, GRRBP7,rgp2, OsRab11B1,OsRab1C1,OsISC23,Nhp2,,,H3R-21,H4,htpB,,,,,OsDPK2, stk,,,,,,,ole18,Os6PGDH2,OsPBB1, PUP1,SUP44,,,,,PRP-22,,,,,,,,,,,,,OsRPL3A, ARP1, ARP3,rpL32_8.1,,,,,,,,,,,,,,,OsFbox067, OsFbox67, Os_F0477,,,,,,,,,,surf-3,Ubi1,,,,,OsDjA4, YDJ1,,OsGSTU11,,AGL2,,,,,,,,,,,Osj3g2BTF3, BTF3b, Os03g2BTF3,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a,OsCYP20-2, OsCYP-11,OsRLCK268,OsXTH11, XTR2, OsXTR2, Meri-5,,,HMGB1, OsHMGB1,OsAKR2, AKR4C14,OsRab1B2, OsRas1,UbL40-1, OsUbL40-1,RPS13, RPS13a, OsRPS13, OsRPS13a,OsPK1, PK1,eIF-5A-2,CRO1, CRT,OsTubA3, TubA3, OS-TubA1, TubA1,,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsGMPS1,RPS4, RPS19, OsRPS4, OsRPS19 ,OsRPS28,RPS23, OsRPS23,rig, RPS15, OsRPS15,OsRPS24,RPL22, OsRPL17, OsRPL22,RPS27a, OsUBQ5, OsRPS27a,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2,RPS25, RPS25a, OsRPS25, OsRPS25a ,RPS6, RPS6a, RPS6A, OsRPS6, OsRPS6a,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,RPS3a,rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p,OsRPL31,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna,OsCc1, OsCc-1,,OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,,OsGS2, GLN2, RGS31,UbL40-2, OsUbL40-2,UbL40-4, OsUbL40-4,OsGSTF5, OsGST F5,,Sec23c,AldC-1,OsCSP2, CPS2,OsSCP10, SCP10,Rad6, OsRad6, Dhr6, OsUBC9, UBC9,OsValRS1, ValRS1,ocp*, ocp,Osj3g1BTF3, BTF3a, Os03g1BTF3,OsPABPC1, PABPC1,Ub-CEP52-2,mt rpl13, mt RPL13,S27a,,PGK, OsPGK4,OsMed37_1, Med37_1 ,OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6 ,OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP ,GAPDH, OsGAPDH, OsGapC2,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,Ugp1, OsUgp1, UGP2, UGP3,HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 ,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,RMtATPb, atpB, AtpB ,OsPCNA, PCNA,OsMed36_2, Med36_2 ,Pho1, OsPho1, OsPHOL, PHOL,OsPOP1, POP1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsRab7B3, Rab7B3, OsRab7, Rab7,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsRAN2, RAN2,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsLTP1.8, OsLtpI.8,OsLTP1.12, OsLtpI.12,OsLTP1.15, OsLtpI.15,eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4,OsRH2, RH2, eIF4A-3,GF14b, OsGF14b, 14-3-3b,Dhr6, OsUBC5b, OsUBC16, UBC16,OsHsp90, HSP90,Adh1, Adh1/2, adh1/adh2, OsADH1,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,OsGRP3, RTP, RBP-152 
21767	12447438	Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T., Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y., Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K., Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K., Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y., Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Ito,S., Ito,T., Ito,Y., Ito,Y., Iwabuchi,A., Kamiya,K., Karasawa,W., Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K., Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H., Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N., Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M., Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K., Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S., Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H., Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T.	The genome sequence and structure of rice chromosome 1.	Nature	420(6913)	312-316	2002		
21768	10854779	Sassa,H., Oguchi,S., Inoue,T. and Hirano,H.	Primary structural features of the 20S proteasome subunits of rice (Oryza sativa).	Gene	250(1-2)	61-66	2000	_,_,_,_,_,_,_,_,_,TT1,_,_,_,_	OsPAC1,OsPAD1,OsPBG1,OsPBA1,OsPBC1,OsPBD1,OsPAF1,OsPAA1, PAA1,OsPAE1, PAE1,OsPAB1, PAB1, OsTT1,OsPBE1,OsPBB1, PUP1,OsPAG1, OsPSA7,OsPBF1
21769		Sato,H., Suzuki,Y., Sakai,M. and Imbe,T.	Molecular Characterization of Wx-mq, a Novel Mutant Gene for Low-amylose Content in Endosperm of Rice (Oryza sativa L.)	Breeding Science	52(2)	131-135	2002	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21770	9869405	Sato,Y., Sentoku,N., Nagato,Y. and Matsuoka,M.	Isolation and characterization of a rice homebox gene, OSH15.	Plant Mol. Biol.	38(6)	983-998	1998	OSH15	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
21771	7742859	Sauter,M., Mekhedov,S.L. and Kende,H.	Gibberellin promotes histone H1 kinase activity and the expression of cdc2 and cyclin genes during the induction of rapid growth in deepwater rice internodes.	Plant J.	7(4)	623-632	1995	CYCB2;2,CYCB2;1,CDC2-1,CDC2-2	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2
21772	12432025	Sauter,M., Rzewuski,G., Marwedel,T. and Lorbiecke,R.	The novel ethylene-regulated gene OsUsp1 from rice encodes a member of a plant protein family related to prokaryotic universal stress proteins.	J. Exp. Bot.	53(379)	2325-2331	2002	_,PDC2,ADH1	OsUsp1,pdc2*, pdc2,Adh1, Adh1/2, adh1/adh2, OsADH1
21773	15557090	Sauter,M., Cornell,K.A., Beszteri,S. and Rzewuski,G.	Functional Analysis of Methylthioribose Kinase Genes in Plants.	Plant Physiol.	136(4)	4061-4071	2004	_,_	OsMTK2,OsMTK, OsMTK1, MTK, MTK1
21774	16297065	Sauter,M., Lorbiecke,R., Ouyang,B., Pochapsky,T.C. and Rzewuski,G.	The immediate-early ethylene response gene OsARD1 encodes an acireductone dioxygenase involved in recycling of the ethylene precursor S-adenosylmethionine.	Plant J.	44(5)	718-729	2005	SIP2,SIP2A	Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1
21775	10323860	Sawa,S., Watanabe,K., Goto,K., Liu,Y.G., Shibata,D., Kanaya,E., Morita,E.H. and Okada,K.	FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains.	Genes Dev.	13(9)	1079-1088	1999	SH1,YAB1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsYAB1, FIL1, osFIL1
21776		Sawada,K. and Iwata,M.	Isolation of blast fungal cerebroside elicitor-responsive genes in rice plants	J. Gen. Plant Pathol.	68	128-133	2002	_,_,_	Os GPT,,Os SBP, OsSBP
21777		Sawada,K., Tokuda,L. and Shinmyo,A.	Characterization of the Rice Blast Fungal Elicitor-Responsive Gene OsSBP Encoding a Homolog to the Mammalian Selenium-binding Proteins	Plant Biotechnol.	20(2)	177-181	2003	_	Os SBP, OsSBP
21778	15118317	Sawada,K., Hasegawa,M., Tokuda,L., Kameyama,J., Kodama,O., Kohchi,T., Yoshida,K. and Shinmyo,A.	Enhanced resistance to blast fungus and bacterial blight in transgenic rice constitutively expressing OsSBP, a rice homologue of mammalian selenium-binding proteins.	Biosci. Biotechnol. Biochem.	68(4)	873-880	2004	_	Os SBP, OsSBP
21779	10998053	Schaffrath,U., Zabbai,F. and Dudler,R.	Characterization of RCI-1, a chloroplastic rice lipoxygenase whose synthesis is induced by chemical plant resistance activators.	Eur. J. Biochem.	267(19)	5935-5942	2000	LOX-L2,LOX-RCI1,LOX11,_	OsLOX-L2, LOX1.1, LOX L-2, LOX-2,OsLOX-RCI1,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
21781	9225866	Schultz,T.F. and Quatrano,R.S.	Characterization and expression of a rice RAD23 gene.	Plant Mol. Biol.	34(3)	557-562	1997	RAD23	OsRAD23
21783	10488233	Sentoku,N., Sato,Y., Kurata,N., Ito,Y., Kitano,H. and Matsuoka,M.	Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development.	Plant Cell	11(9)	1651-1663	1999	OSH1,OSH6,OSH3,OSH43,OSH15,OSH10,OSKN2	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsH6, HOS16,OsH3, H3, HOS13,OsH43, H43,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsH10, H10, HB412,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
21784	15682279	Sentoku,N., Kato,H., Kitano,H. and Imai,R.	OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	273(1)	1-9	2005	MADS22	OsMADS22, RMD1
21785	7766894	Seo,H.S., Kim,H.Y., Jeong,J.Y., Lee,S.Y., Cho,M.J. and Bahk,J.D.	Molecular cloning and characterization of RGA1 encoding a G protein alpha subunit from rice (Oryza sativa L. IR-36).	Plant Mol. Biol.	27(6)	1119-1131	1995	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
21786	15292215	Serrato,A.J., Perez-Ruiz,J.M., Spinola,M.C. and Cejudo,F.J.	A novel NADPH thioredoxin reductase, localized in the chloroplast, which deficiency causes hypersensitivity to abiotic stress in Arabidopsis thaliana.	J. Biol. Chem.	279(42)	43821-43827	2004	NTRC	OsNTRC, NtrC, OsGRL15
21787	9099854	Sha,S., Yabushita,T., Minakuchi,K., Masumura,T. and Tanaka,K.	Structure of the rice glutaredoxin (thioltransferase) gene.	Gene	188(1)	23-28	1997	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2
21788	15215503	Sharma,A., Isogai,M., Yamamoto,T., Sakaguchi,K., Hashimoto,J. and Komatsu,S.	A Novel Interaction between Calreticulin and Ubiquitin-Like Nuclear Protein in Rice.	Plant Cell Physiol.	45(6)	684-692	2004	_,_	CRO1, CRT,CRTintP
21789	7568110	Shcherban,T.Y., Shi,J., Durachko,D.M., Guiltinan,M.J., McQueen-Mason,S.J., Shieh,M. and Cosgrove,D.J.	Molecular cloning and sequence analysis of expansins--a highly conserved, multigene family of proteins that mediate cell wall extension in plants.	Proc. Natl. Acad. Sci. U.S.A.	92(20)	9245-9249	1995	EXPA1,EXPA3,EXPA2	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
21790	14640074	Shen,G.-a., Pang,Y.-z., Lin,C.-f., Wei,C., Qian,X.-y., Jiang,L.-z., Du,X.-l., Li,K.-g., ATTia,K. and Yang,J.-s.	Cloning and characterization of a novel Hsp100/Clp gene (osClpD) from Oryza sativa	DNA Seq.	14(4)	285-293	2003	ERD1	CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
21791	2016064	Shimada,H. and Tada,Y.	Rapid isolation of a rice waxy sequence: a simple PCR method for the analysis of recombinant plasmids from intact Escherichia coli cells.	Gene	98(2)	243-248	1991		
21792	15356321	Shimada,H., Koizumi,M., Kuroki,K., Mochizuki,M., Fujimoto,H., Ohta,H., Masuda,T. and Takamiya,K.	ARC3, a Chloroplast Division Factor, is a Chimera of Prokaryotic FtsZ and Part of Eukaryotic Phosphatidylinositol-4-phosphate 5-kinase.	Plant Cell Physiol.	45(8)	960-967	2004	_	ARC3
21795	16051676	Shimizu,H., Sato,K., Berberich,T., Miyazaki,A., Ozaki,R., Imai,R. and Kusano,T.	LIP19, a Basic Region Leucine Zipper Protein, is a Fos-like Molecular Switch in the Cold Signaling of Rice Plants.	Plant Cell Physiol.	46(10)	1623-1634	2005	LIP19,OBF1	Lip19, lip19, OsbZIP38,OsOBF1, OsbZIP87
21796	7716235	Shintani,A., Yamauchi,D. and Minamikawa,T.	Nucleotide sequence of cDNA for a putative cysteine protease from rice seeds.	Plant Physiol.	107(3)	1025	1995	_	OsCP1
21797	10571178	Shirasu,K., Lahaye,T., Tan,M.W., Zhou,F., Azevedo,C. and Schulze-Lefert,P.	A novel class of eukaryotic zinc-binding proteins is required for disease resistance signaling in barley and development in C. elegans.	Cell	99(4)	355-366	1999		
21798	9678973	Shoji,K., Iwasaki,T., Matsuki,R., Miyao,M. and Yamamoto,N.	Cloning of a cDNA encoding an importin-alpha and down-regulation of the gene by light in rice leaves.	Gene	212(2)	279-286	1998	IMPA1A,IMPA1B	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a,
21799	1731968	Shorrosh,B.S., Wen,L., Zen,K.C., Huang,J.K., Pan,J.S., Hermodson,M.A., Tanaka,K., Muthukrishnan,S. and Reeck,G.R.	A novel cereal storage protein: molecular genetics of the 19 kDa globulin of rice.	Plant Mol. Biol.	18(1)	151-154	1992	GLB1	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77
21800	2251127	Shyur,L.F. and Chen,C.S.	Nucleotide sequence of two rice prolamin cDNAs.	Nucleic Acids Res.	18(22)	6683	1990	_,_	,Prol-22, pro13b.3, PROLM22
21801	1391776	Shyur,L.F., Wen,T.N. and Chen,C.S.	cDNA cloning and gene expression of the major prolamins of rice.	Plant Mol. Biol.	20(2)	323-326	1992	_	Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26
21804	1731976	Simmons,C.R., Litts,J.C., Huang,N. and Rodriguez,R.L.	Structure of a rice beta-glucanase gene regulated by ethylene, cytokinin, wounding, salicylic acid and fungal elicitors.	Plant Mol. Biol.	18(1)	33-45	1992	_	OsPR2, Gns1, OsEGL1
21805	12856948	Simmons,C.R., Fridlender,M., Navarro,P.A. and Yalpani,N.	A maize defense-inducible gene is a major facilitator superfamily member related to bacterial multidrug resistance efflux antiporters.	Plant Mol. Biol.	52(2)	433-446	2003	ZIFL2,ZIFL10	OsZIFL2, Os-mfs1, mfs1,OsZIFL10, Os-mfs2, mfs2
21806	14638937	Singla-Pareek,S.L., Reddy,M.K. and Sopory,S.K.	Genetic engineering of the glyoxalase pathway in tobacco leads to enhanced salinity tolerance	Proc. Natl. Acad. Sci. U.S.A.	100(25)	14672-14677	2003	GLYII-3	OsGLYII3, GLYII3, gly II, OsGLYII-3
21807	16429261	Sivamani,E. and Qu,R.	Expression enhancement of a rice polyubiquitin gene promoter.	Plant Mol. Biol.	60(2)	225-239	2006	RUBI3	rubi3, UBQ3
21808	11752383	Skinner,D.J., Baker,S.C., Meister,R.J., Broadhvest,J., Schneitz,K. and Gasser,C.S.	The Arabidopsis HUELLENLOS gene, which is essential for normal ovule development, encodes a mitochondrial ribosomal protein.	Plant Cell	13(12)	2719-2730	2001	_	HLL
21809	16244905	Skinner,J.S., J., Szucs,P., Marquez-Cedillo,L., Filichkin,T., Amundsen,K., Stockinger,E.J., Thomashow,M.F., Chen,T.H. and Hayes,P.M.	Structural, Functional, and Phylogenetic Characterization of a Large CBF Gene Family in Barley.	Plant Mol. Biol.	59(4)	533-551	2005	DREB1D,DREB1E,DREB1F,DREB1B	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C
21810	8049375	Smith,M.A., Stobart,A.K., Shewry,P.R. and Napier,J.A.	Tobacco cytochrome b5: cDNA isolation, expression analysis and in vitro protein targeting.	Plant Mol. Biol.	25(3)	527-537	1994	_	
21811	9159957	Solinas,G., Pandolfo,D., Valle,G. and Coraggio,I.	The electronic Plant Gene Register.	Plant Physiol.	114(1)	395-396	1997	PLDALPHA3,PLDalpha1	OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2,RPLD1, PLD1, OsPLDalpha1
21812	9235602	Solinas,G., Valle,G., Pandolfi,D. and Coraggio,I.	The electronic Plant Gene Register.	Plant Physiol.	114(2)	747-749	1997	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8
21813		Song,F. and Goodman,R.M.	Molecular cloning and characterization of a rice phosphoinositide-specific phospholipase C gene, OsPI-PLC1, that is activated in systemic acquired resistance	Physiol. Mol. Plant Pathol.	61(1)	31-40	2002	_	OsPI-PLC1, PI-PLC1, OsPLC1, PLC1 
21814	9039500	Song,J., Yamamoto,K., Shomura,A., Yano,M., Minobe,Y. and Sasaki,T.	Characterization and mapping of cDNA encoding aspartate aminotransferase in rice, Oryza sativa L.	DNA Res.	3(5)	303-310	1996	GOT1,GOT2	Got1, Aat1, OsAAT, GOT-A,Got2, Aat2
21815	9679197	Song,J., Yamamoto,K., Shomura,A., Itadani,H., Zhong,H.S., Yano,M. and Sasaki,T.	Isolation and mapping of a family of putative zinc-finger protein cDNAs from rice.	DNA Res.	5(2)	95-101	1998	_,_,_,_,_,_,_	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsP, OsBBX9, OsCCT12, BBX9, CCT12,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2,OsBBX11, OsSTO, BBX11, STO,OsBBX16, OsDBB3a, BBX16, DBB3a,OsBBX22, BBX22,OsBBX4, OsSTH, BBX4, STH
21816	14729919	Song,J.T., Lu,H. and Greenberg,J.T.	Divergent Roles in Arabidopsis thaliana Development and Defense of Two Homologous Genes, ABERRANT GROWTH AND DEATH2 and AGD2-LIKE DEFENSE RESPONSE PROTEIN1, Encoding Novel Aminotransferases.	Plant Cell	16(2)	353-366	2004	_,_	OsAGD2,OsALD1, ALD1
21817	11826307	Song,W., Solimeo,H., Rupert,R.A., Yadav,N.S. and Zhu,Q.	Functional dissection of a Rice Dr1/DrAp1 transcriptional repression complex.	Plant Cell	14(1)	181-195	2002	DRAP1	OsDrAp1, DrAp1
21818	8525370	Song,W.-Y., Wang,G.-L., Chen,L.-L., Kim,H.-S., Pi,L.-Y., Holsten,T., Wang,G.B., Zhai,W.-X., Zhu,L.-H., Fauquet,C. and Ronald,P.	A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21.	Science	270(5243)	1804-1806	1995	XA21	Xa21*, Xa21, OsXA21
21820	9286106	Song,W.Y., Pi,L.Y., Wang,G.L., Gardner,J., Holsten,T. and Ronald,P.C.	Evolution of the rice Xa21 disease resistance gene family.	Plant Cell	9(8)	1279-1287	1997	XA21	Xa21*, Xa21, OsXA21
21821	15069639	Soranzo,N., M., Mizzi,L., G. and Frova,C.	Organisation and structural evolution of the rice glutathione S-transferase gene family.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	271(5)	511-521	2004	GSTF10,GSTU24,GSTU25,GSTU10,GSTF11,GSTZ2,GSTU17,GSTU19,GSTF16,GSTT1,GSTU31,GSTU34,GSTU4,GSTU20,EF1G2,GSTT2,GSTF14,GSTU28,GSTU11,GSTU13,GSTU9,GSTU14,DHAR2,GSTU21,GSTZ1,GSTF12,GSTU33,GSTU27,GSTU8,GSTU2,GSTU26,GSTU30,GSTU3,GSTF1,GSTU22,GSTF2,GSTF15,GSTF7,GSTF8,GSTF9,GSTF13,GSTZ3,GSTF4,GSTU6,GSTU7,GSTU38,GSTU15,GSTU18,GSTU36,GSTU40,GSTU12,GSTU16,GSTF3,GSTU37,GSTU32,GSTU23,EEF1BG,RPP31,GSTU1,GSTF5,GSTU5,GSTU35,GSTU39,DHAR1	OsGSTF10,OsGSTU24,OsGSTU25,OsGSTU10,OsGSTF11, OsGST4,OsGSTZ2, GSTZ-2,OsGSTU17, OsGST23, GST23 ,OsGSTU19, GSTU6, OsGSTU6.1, GSTU6.1,OsGSTF16,OsGSTT1,OsGSTU31,OsGSTU34,OsGSTU4,OsGSTU20,OsEF1G2,,OsGSTF14, GST14,OsGSTU28,OsGSTU11,OsGSTU13,OsGSTU9,OsGSTU14,OsDHAR2,OsGSTU21,OsGSTZ1, GSTZ-1,OsGSTF12, OsEnS-7,OsGSTU33,OsGSTU27,OsGSTU8, OsGST35, GST35,OsGSTU2, ParC,OsGSTU26,OsGSTU30,OsGSTU3, OsGSTU29, GSTU29,OsGSTF1, RGSI,OsGSTU22,OsGSTF2, RGSTII,OsGSTF15,OsGSTF7,OsGSTF8,OsGSTF9,OsGSTF13,OsGSTZ3,OsGSTF4,OsGSTU6,OsGSTU7,OsGSTU38,OsGSTU15,OsGSTU18, OsGSTU7, GSTU7,OsGSTU36,OsGSTU40,OsGSTU12, OsGSTU6.2, GSTU6.2,OsGSTU16,OsGSTF3, gstf3,OsGSTU37,OsGSTU32,OsGSTU23,eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1,OsRPP31, OsGSTF6, GSTF6,OsGSTU1,OsGSTF5, OsGST F5,OsGSTU5,OsGSTU35,OsGSTU39,OsDHAR1, DHAR, cytDHAR, OsDHAR
21822	12077303	Spielmeyer,W., Ellis,M.H. and Chandler,P.M.	Semidwarf (sd-1), &quot;green revolution&quot; rice, contains a defective gibberellin 20-oxidase gene.	Proc. Natl. Acad. Sci. U.S.A.	99(13)	9043-9048	2002	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
21823	10608658	Stahl,U., Lee,M., Sjoedahl,S., Acher,D., Cellini,F., Ek,B., Iannacone,R., MacKenzie,D.A., Semeraro,L., Tramontano,E. and Stymne,S.	Plant low-molecular-weight phospholipase A2S (PLA2s) are structurally related to the animal secretory PLA2s and are present as a family of isoforms in rice (Oryza sativa).	Plant Mol. Biol.	41(4)	481-490	1999	_,_	PLA2-II,PLA2-I
21824	12610225	Suenaga,A., Moriya,K., Sonoda,Y., Ikeda,A., N., Hayakawa,T., Yamaguchi,J. and Yamaya,T.	Constitutive Expression of a Novel-Type Ammonium Transporter OsAMT2 in Rice Plants.	Plant Cell Physiol.	44(2)	206-211	2003	AMT2;3,AMT2;2,AMT3;2,AMT3;3,AMT4;1,AMT2;1,AMT3;1	OsAMT2;3, AMT2;3, OsAMT2.3,OsAMT2;2, AMT2;2, OsAMT2.2,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT4, OsAMT4;1, AMT4-1,OsAMT2;1, AMT2-1, OsAMT2.1,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2
21825	12092832	Sugimori,M., Kiribuchi,K., Akimoto,C., Yamaguchi,T., Minami,E., Shibuya,N., Sobajima,H., Cho,E.M., Kobashi,N., Nojiri,H., Omori,T., Nishiyama,M. and Yamane,H.	Cloning and characterization of cDNAs for the jasmonic acid-responsive Genes RRJ1 and RRJ2 in suspension-cultured rice cells.	Biosci. Biotechnol. Biochem.	66(5)	1140-1142	2002	_,PDC1,PDC3,PDC2	RRJ1,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2,pdc3*, pdc3, OsPDC3, OsSTA202,pdc2*, pdc2
21826	15653795	Sugiyama,K., Hayakawa,T., Kudo,T., Ito,T. and Yamaya,T.	Interaction of N-Acetylglutamate Kinase with a PII-Like Protein in Rice.	Plant Cell Physiol.	45(12)	1768-1778	2004	_,_,_	OsNAGK1, NAGK1,OsNAGK2, NAGK2,OsGlnB
21827	12953112	Sun,C., Palmqvist,S., Olsson,H., Boren,M., Ahlandsberg,S. and Jansson,C.	A Novel WRKY Transcription Factor, SUSIBA2, Participates in Sugar Signaling in Barley by Binding to the Sugar-Responsive Elements of the iso1 Promoter.	Plant Cell	15(9)	2076-2092	2003	WRKY87	OsWRKY87, OsSUSIBA2-like
21828	14756760	Sun,X., Cao,Y., Yang,Z., Xu,C., Li,X., Wang,S. and Zhang,Q.	Xa26, a gene conferring resistance to Xanthomonas oryzae pv. oryzae in rice, encodes an LRR receptor kinase-like protein.	Plant J.	37(4)	517-527	2004	XA3,MRKd,MRKa,MRKc	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,MRKd, RKd, TRKd,MRKa, RKa, TRKa,MRKc, RKc, TRKc
21829	1714318	Sutliff,T.D., Huang,N., Litts,J.C. and Rodriguez,R.L.	Characterization of an alpha-amylase multigene cluster in rice.	Plant Mol. Biol.	16(4)	579-591	1991	AMY3A,AMY3B,AMY3C	Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C
21830	2566167	Suzuka,I., Daidoji,H., Matsuoka,M., Kadowaki,K., Takasaki,Y., Nakane,P.K. and Moriuchi,T.	Gene for proliferating-cell nuclear antigen (DNA polymerase delta auxiliary protein) is present in both mammalian and higher plant genomes.	Proc. Natl. Acad. Sci. U.S.A.	86(9)	3189-3193	1989	_	OsPCNA, PCNA
21831	1671766	Suzuka,I., Hata,S., Matsuoka,M., Kosugi,S. and Hashimoto,J.	Highly conserved structure of proliferating cell nuclear antigen (DNA polymerase delta auxiliary protein) gene in plants.	Eur. J. Biochem.	195(2)	571-575	1991	_	OsPCNA, PCNA
21833	9370307	Suzuki,A., Suzuki,T., Tanabe,F., Toki,S., Washida,H., Wu,C.Y. and Takaiwa,F.	Cloning and expression of five myb-related genes from rice seed.	Gene	198(1-2)	393-398	1997	_,_,_,_,_	OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C,OsMyb5, OSMYB5, MYB5,OsMyb1, OSMYB1, MYB1,OsMyb2, OSMYB2, MYB2,OsMyb3, OSMYB3, MYB3
21834	12815035	Suzuki,K., Suzuki,Y. and Kitamura,S.	Cloning and expression of a UDP-glucuronic acid decarboxylase gene in rice.	J. Exp. Bot.	54(389)	1997-1999	2003	_,_	UXS, UXS-3, OsUXS3,UXS-4, OsUXS4
21835	15488465	Suzuki,K., Watanabe,K., Masumura,T. and Kitamura,S.	Characterization of soluble and putative membrane-bound UDP-glucuronic acid decarboxylase (OsUXS) isoforms in rice.	Arch. Biochem. Biophys.	431(2)	169-177	2004	_,_,_,_,_,_	UXS, UXS-3, OsUXS3,UXS-4, OsUXS4,OsUXS1, UXS-1,OsUXS5, UXS-5,OsUXS2, UXS-2,OsUXS6, UXS-6
21836	11444698	Swidzinski,J.A., Zaplachinski,S.T., Chuong,S.D., Wong,J.F. and Muench,D.G.	Molecular characterization and expression analysis of a highly conserved rice mago nashil homolog.	Genome	44(3)	394-400	2001	_	mago, OsMAGO2, MAGO2 
21837	15918879	Tabuchi,M., Sugiyama,K., Ishiyama,K., Inoue,E., Sato,T., Takahashi,H. and Yamaya,T.	Severe reduction in growth rate and grain filling of rice mutants lacking OsGS1;1, a cytosolic glutamine synthetase1;1.	Plant J.	42(5)	641-651	2005	_,GLN1;2,GLN1;1	OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1
21839	9988639	Tahir,M., Kanegae,H. and Takano,M.	Phytochrome C (PHYC) gene in rice : Isolation and characterization of a complete coding sequence (Accession No. AB018442) (PGR98-210)	Plant Physiol.	118(4)	1535	1998		
21840	10437831	Takabatake,R., Hata,S., Taniguchi,M., Kouchi,H., Sugiyama,T. and Izui,K.	Isolation and characterization of cDNAs encoding mitochondrial phosphate transporters in soybean, maize, rice, and Arabidopis.	Plant Mol. Biol.	40(3)	479-486	1999		
21841	7948880	Takahashi,R., Joshee,N. and Kitagawa,Y.	Induction of chilling resistance by water stress, and cDNA sequence analysis and expression of water stress-regulated genes in rice.	Plant Mol. Biol.	26(1)	339-352	1994	LEA24,WSI76,WSI18	OsLEA24, WSI724,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18
21844	11416158	Takahashi,Y., Shomura,A., Sasaki,T. and Yano,M.	Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.	Proc. Natl. Acad. Sci. U.S.A.	98(14)	7922-7927	2001	HD16,HD6	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha
21845	12028574	Takai,R., Matsuda,N., Nakano,A., Hasegawa,K., Akimoto,C., Shibuya,N. and Minami,E.	EL5, a rice N-acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b.	Plant J.	30(4)	447-455	2002	EL5,UBC5B,UBC5A	EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6,OsUBC5b, OsUBC15, UBC15,OsUBC5a, OsUBC14, UBC14
21846	1840621	Takaiwa,F. and Oono,K.	Genomic DNA sequences of two new genes for new storage protein glutelin in rice.	Jpn. J. Genet.	66(2)	161-171	1991	GLU6,GLUA3	Glu6*(GluA4), Glu6, GluA4, GluA-4,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3
21847	6087286	Takaiwa,F., Oono,K. and Sugiura,M.	The complete nucleotide sequence of a rice 17S rRNA gene.	Nucleic Acids Res.	12(13)	5441-5448	1984	17S  rRNA	rrn17
21848		Takaiwa,F., Oono,K. and Sugiura,M.	Nucleotide sequence of the 17S-25S spacer region from rice rDNA	Plant Mol. Biol.	4(6)	355-364	1985	17S  rRNA,25S rRNA,5.8S rRNA	rrn17,25S rRNA,5.8S rRNA
21849	3902573	Takaiwa,F., Oono,K., Iida,Y. and Sugiura,M.	The complete nucleotide sequence of a rice 25S.rRNA gene.	Gene	37(1-3)	255-259	1985	_	
21850		Takaiwa,F., Ebinuma,H., Kikuchi,S. and Oono,K.	Nucleotide sequence of a rice glutelin gene	FEBS Lett.	221	43-47	1987	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21851		Takaiwa,F., Kikuchi,S. and Oono,K.	A rice glutelin gene family - A major type of glutelin mRNAs can be divided into two classes	Mol. Gen. Genet.	208	15-22	1987	GLU1,GLU2	Glu1(Srp1, Gt2), Srp, Gt2, Glu1,Glu2*(Gt1), Gt1, Glu2
21852	2726459	Takaiwa,F., Kikuchi,S. and Oono,K.	The complete nucleotide sequence of new type cDNA coding for rice storage protein glutelin.	Nucleic Acids Res.	17(8)	3289	1989	GLU4	Glu4*, Glu4, OsGLU4
21853	2103482	Takaiwa,F., Kikuchi,S. and Oono,K.	The complete nucleotide sequence of the intergenic spacer between 25S and 17S rDNAs in rice.	Plant Mol. Biol.	15(6)	933-935	1990	17S  rRNA,25S rRNA	rrn17,25S rRNA
21854	1888896	Takaiwa,F., Oono,K. and Kato,A.	Analysis of the 5' flanking region responsible for the endosperm-specific expression of a rice glutelin chimeric gene in transgenic tobacco.	Plant Mol. Biol.	16(1)	49-58	1991	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21855	1680490	Takaiwa,F., Oono,K., Wing,D. and Kato,A.	Sequence of three members and expression of a new major subfamily of glutelin genes from rice.	Plant Mol. Biol.	17(4)	875-885	1991	GLUB1,GLUB3.P,GLU7	GluB1, GluB1-A, GluB-1, OsGluB1,GluB-3.P, GluB-3,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7
21856	10890535	Takakura,Y., Ito,T., Saito,H., Inoue,T., Komari,T. and Kuwata,S.	Flower-predominant expression of a gene encoding a novel class I chitinase in rice (Oryza sativa L.).	Plant Mol. Biol.	42(6)	883-897	2000	CHIA1;175	OsChia1;175, PC, Cht7, OsChia1d, Chia1d 
21857	9870704	Takano,M., Kajiya-Kanegae,H., Funatsuki,H. and Kikuchi,S.	Rice has two distinct classes of protein kinase genes related to SNF1 of Saccharomyces cerevisiae, which are differently regulated in early seed development.	Mol. Gen. Genet.	260(4)	388-394	1998	OSK2,OSK1,OSK4,OSK3	osk2,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35 
21858	16278346	Takano,M., Inagaki,N., Xie,X., Yuzurihara,N., Hihara,F., Ishizuka,T., Yano,M., Nishimura,M., Miyao,A., Hirochika,H. and Shinomura,T.	Distinct and cooperative functions of phytochromes a, B, and C in the control of deetiolation and flowering in rice.	Plant Cell	17(12)	3311-3325	2005	PHYC,PHYA,PHYB	OsPHYC, OsPHYCa, OsPHYCb,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,phyB, PHYB1, OsPHYB, OsphyB
21859	10503544	Takeda,Y., Hatano,S., Sentoku,N. and Matsuoka,M.	Homologs of animal eyes absent (eya) genes are found in higher plants.	Mol. Gen. Genet.	262(1)	131-138	1999	EYA1	OsEya1, OSEya1, OSEYA1
21861	11950970	Takemoto,Y., Coughlan,S.J., Okita,T.W., Satoh,H., Ogawa,M. and Kumamaru,T.	The rice mutant esp2 greatly accumulates the glutelin precursor and deletes the protein disulfide isomerase.	Plant Physiol.	128(4)	1212-1222	2002	_,_,CNX,ESP2	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsCNX, OsCNX1, CNX1,esp2(rsp2), rsp2, esp2, PDIL1-1
21862	15345035	Talbert,P.B., Bryson,T.D. and Henikoff,S.	Adaptive evolution of centromere proteins in plants and animals.	J. Biol.	3(4)	18	2004	_	CENP-C
21863	7599652	Tamaoki,M., Tsugawa,H., Minami,E., Kayano,T., Yamamoto,N., Kano-Murakami,Y. and Matsuoka,M.	Alternative RNA products from a rice homeobox gene.	Plant J.	7(6)	927-938	1995	OSH45	OSH42, OSH44, H45
21864	15705958	Tanabe,S., Ashikari,M., Fujioka,S., Takatsuto,S., Yoshida,S., Yano,M., Yoshimura,A., Kitano,H., Matsuoka,M., Fujisawa,Y., Kato,H. and Iwasaki,Y.	A Novel Cytochrome P450 Is Implicated in Brassinosteroid Biosynthesis via the Characterization of a Rice Dwarf Mutant, dwarf11, with Reduced Seed Length.	Plant Cell	17(3)	776-790	2005	DWARF4L,D2,D11	OsDWARF4L,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
21865	7610165	Tanaka,K., Ohnishi,S., Kishimoto,N., Kawasaki,T. and Baba,T.	Structure, organization, and chromosomal location of the gene encoding a form of rice soluble starch synthase.	Plant Physiol.	108(2)	677-683	1995	SSI	OsSSI, SSS 1, SSS1, SS1
21866	9150612	Tanaka,Y., Makishima,T., Sasabe,M., Ichinose,Y., Shiraishi,T., Nishimoto,T. and Yamada,T.	dad-1, A putative programmed cell death suppressor gene in rice.	Plant Cell Physiol.	38(3)	379-383	1997	_	dad-1, DAD-1, DAD1
21867	15122023	Tang,J., Xia,H., Cao,M., Zhang,X., Zeng,W., Hu,S., Tong,W., Wang,J., Wang,J., Yu,J., Yang,H. and Zhu,L.	A Comparison of Rice Chloroplast Genomes.	Plant Physiol.	135(1)	412-420	2004	PSBA,NDHE,_,PSBC,RPS19,_,NDHI,_,_,RPS7,RPS3,NDHG,RPL23,RPS11,PSBN,_,_,RPL14,NDHK,PSBI,PSBE,NDHJ,RPL22,NDHC,RPL36,PSBH,YCF4,RPL33,RPS2,CLPP,RPS8,INFA,_,_,NDHF,RPS4,RPS7,NDHD,_,PSAC,_,PETA,NDHH,PSBF,RPL23,RPL32,RPL2,PSBK,PSBD,RPS14,RPL16,PSBM,RPS3,_,RPS15,RPS15,RPS18,RPOC1,PSAB,RPL2,PSAA,RPOB,PETE,RBCL,RPL2,RPOA,PETD	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,ndhE,matK, ORF542 ,psbC, cp43 ,rps19,rpoC2,ORF178, ndhI,rpl2,atpE,rps7,rps3,ndhG,rpl23,rps11,psbN,ORF321, ccsA,atpH,rpl14,psbG, ndhK,psbI,psbE,ORF159, ndhJ,rpl22,ndhC,rpl36,psbH, psbF ,Ycf4, ORF185,rpl33,rps2,ORF216, ClpP, clpP,rps8,infA,ORF106, accD,atpI,ndhF,rps4 ,rps7,ndhD, NdhD, NDH4, NADH4,atpA,psaC,ORF56, ndhH,petA, Cytf, cytF, Cyt f,ORF393, ndhH,psbF,rpl23,rpl32, ORF63,rpl2,psbK,psbD, D2, OsPsbD1, OsPsbD2,rps14 ,rpl16,psbM,rps3,psbB,rps15,rps15,rps18,rpoC1, RPO beta', RPObeta',PsaB, psaB, PsAA2,rpl2,PsaA, psaA, PsAA1,rpoB, RpoB, Rpobeta,petE, petG,rbcL, rbcA, OsrbcL,rpl2,rope, rpoalpha, Rpoalpha, rope, RpoA ,petD
21870	10715324	Tarchini,R., Biddle,P., Wineland,R., Tingey,S. and Rafalski,A.	The complete sequence of 340 kb of DNA around the rice Adh1-adh2 region reveals interrupted colinearity with maize chromosome 4.	Plant Cell	12(3)	381-391	2000	MERMITE,ADH2,MAR1,ADH1	Mermite,Adh2*, Adh2,Osmar1,Adh1, Adh1/2, adh1/adh2, OsADH1
21871	14513380	Teerawanichpan,P., Chandrasekharan,M.B., Jiang,Y., Narangajavana,J. and Hall,T.C.	Characterization of two rice DNA methyltransferase genes and RNAi-mediated reactivation of a silenced transgene in rice callus.	Planta.	218(3)	337-349	2004	MET1A,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1,OsMET1b, OsMET1-2, MET1b, MET1
21872	15599508	Teixeira,F.K., Menezes-Benavente,L., Margis,R. and Margis-Pinheiro,M.	Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: inferences from the rice genome.	J. Mol. Evol.	59(6)	761-770	2004	APX2,APX3,APX6,APX8,APX7,APX4,APX1,APX5	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPx5, OsAPx05, OSAPX5, APx5
21873	7808393	Tenzen,T., Matsuda,Y., Ohtsubo,H. and Ohtsubo,E.	Transposition of Tnr1 in rice genomes to 5'-PuTAPy-3' sites, duplicating the TA sequence.	Mol. Gen. Genet.	245(4)	441-448	1994	TNR1	Tnr1
21874	8541663	Terada,Y., Aoki,H., Tanaka,T., Morikawa,H. and Ida,S.	Cloning and nucleotide sequence of a leaf ferredoxin-nitrite reductase cDNA of rice.	Biosci. Biotechnol. Biochem.	59(11)	2183-2185	1995	PSR1	PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR
21875	15653803	Teranishi,M., Iwamatsu,Y., Hidema,J. and Kumagai,T.	Ultraviolet-B sensitivities in Japanese lowland rice cultivars: cyclobutane pyrimidine dimer photolyase activity and gene mutation.	Plant Cell Physiol.	45(12)	1848-1856	2004	_	qUVR-10, OsPHR, OsCPD, CPD
21876	12068121	Terol,J., Bargues,M., Carrasco,P., Perez-Alonso,M. and Paricio,N.	Molecular characterization and evolution of the protein phosphatase 2A B' regulatory subunit family in plants.	Plant Physiol.	129(2)	808-822	2002	PP2A-B'kappa,PP2A-B'zeta,PP2A-B'eta,PP2A-B'lambda,PP2A-B'teta	OsPP2A-B'kappa, OsB'kappa,OsPP2A-B'zeta, OsB'zeta,OsPP2A-B'eta, OsB'eta,OsPP2A-B'lambda, OsB'lambda,OsPP2A-B'theta, OsB'theta, PP2A-B'theta, OsPP2A-B'teta, OsB'teta
21877	9804992	Terui,Y., Tsutsumi,K., Kidou,S., Sawazaki,T., Kuroiwa,Y., Yamaki,M. and Ejiri,S.	A novel variant of translation elongation factor-1beta: isolation and characterization of the rice gene encoding EF-1beta2.	Biochim. Biophys. Acta	1442(2-3)	369-372	1998	EEF1B2	eEF-1beta2, EF-1beta2
21878	11759839	Thakur,J.K., Tyagi,A.K. and Khurana,J.P.	OsIAA1, an Aux/IAA cDNA from rice, and changes in its expression as influenced by auxin and light.	DNA Res.	8(5)	193-203	2001	IAA13	OsIAA13, OsIAA1, OsiIAA1
21879	14527713	Thakur,J.K., Malik,M.R., Bhatt,V., Reddy,M.K., Sopory,S.K., Tyagi,A.K. and Khurana,J.P.	A POLYCOMB group gene of rice (Oryza sativa L. subspecies indica), OsiEZ1, codes for a nuclear-localized protein expressed preferentially in young seedlings and during reproductive development.	Gene	314	1-13	2003	IEZ1	OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718
21880	16139905	Thakur,J.K., Jain,M., Tyagi,A.K. and Khurana,J.P.	Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome.	Biochim. Biophys. Acta	1730(3)	196-205	2005	IAA13	OsIAA13, OsIAA1, OsiIAA1
21881	6092265	Thomas,G. and Padayatty,J.D.	Restriction map &amp; partial sequence of a rice DNA fragment carrying histone genes H2A, H2B &amp; H4.	Indian J. Biochem. Biophys.	21(1)	1-6	1984	_,_,_	H2A,H2B,H4
21882	15258268	Thorlby,G., Fourrier,N. and Warren,G.	The SENSITIVE TO FREEZING2 gene, required for freezing tolerance in Arabidopsis thaliana, encodes a beta-glucosidase.	Plant Cell	16(8)	2192-2203	2004	BGLU36	Os11bglu36, Os11Bglu36, SFR2, sfr2
21883		Tian,X.H., Li,X.P., Zhou,H.L., Zhang,J.S., Gong,Z.Z. and Chen,S.Y.	OsDREB4 genes in rice encode AP2-containing proteins that bind specifically to the dehydration-responsive element	J. Integr. Plant Biol.	47(4)	467-476	2005	ERF38,ERF33,DREB1E	OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1
21885	10467032	To,K.Y., Suen,D.F. and Chen,S.C.	Molecular characterization of ribulose-1,5-bisphosphate carboxylase/oxygenase activase in rice leaves.	Planta.	209(1)	66-76	1999	_	OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA
21886	10408441	Tomitani,A., Okada,K., Miyashita,H., Matthijs,H.C., Ohno,T. and Tanaka,A.	Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts.	Nature	400(6740)	159-162	1999	YGL10	CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
21887	11038054	Toyofuku,K., Kasahara,M. and Yamaguchi,J.	Characterization and expression of monosaccharide transporters (osMSTs) in rice.	Plant Cell Physiol.	41(8)	940-947	2000	MST1,MST2,MST3	OsMST1,OsMST2,OsMST3
21888	9421493	Tozawa,Y., Tanaka,K., Takahashi,H. and Wakasa,K.	Nuclear encoding of a plastid sigma factor in rice and its tissue- and light-dependent expression.	Nucleic Acids Res.	26(2)	415-419	1998	YGL13	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA
21889	11500548	Tozawa,Y., Hasegawa,H., Terakawa,T. and Wakasa,K.	Characterization of rice anthranilate synthase alpha-subunit genes OASA1 and OASA2. Tryptophan accumulation in transgenic rice expressing a feedback-insensitive mutant of OASA1.	Plant Physiol.	126(4)	1493-1506	2001	ASA2,ASA1	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
21890	1581572	Tseng,T.S., Yeh,K.W., Yeh,C.H., Chang,F.C., Chen,Y.M. and Lin,C.Y.	Two rice (Oryza sativa) full-length cDNA clones encoding low-molecular-weight heat-shock proteins.	Plant Mol. Biol.	18(5)	963-965	1992	HSP16.9A,HSP17.3	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,OsHsp17.3, OsHSP17.3, Oshsp17.3 
21891	1463854	Tsuchiya,T., Toriyama,K., Nasrallah,M.E. and Ejiri,S.	Isolation of genes abundantly expressed in rice anthers at the microspore stage.	Plant Mol. Biol.	20(6)	1189-1193	1992	OSC6,OSC4	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1
21892	7858214	Tsuchiya,T., Toriyama,K., Ejiri,S. and Hinata,K.	Molecular characterization of rice genes specifically expressed in the anther tapetum.	Plant Mol. Biol.	26(6)	1737-1746	1994	OSC4,OSC6	Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6
21893	16367953	Tsugane,K., Maekawa,M., Takagi,K., Takahara,H., Qian,Q., Eun,C.H. and Iida,S.	An active DNA transposon nDart causing leaf variegation and mutable dwarfism and its related elements in rice.	Plant J.	45(1)	46-57	2006	GID1,NDART1-2,ClpP5,NDART1-0,NDART1-1,NDART1-3(8),NDART1-3(6),NDART1-3(3-1),NDART1-3(3-2),NDART1-5,NDART1-6,NDART1-7,NDART1-9,NDART1-10,NDART1-11,NDART1-12,NDART(l)1-5,NDART(l)1-21,NDART(l)1-22,NDART(l)1-23,NDART(l)1-24,NDART(l)1-25,NDART(l)1-26,NDART1-101,NDART1-102,NDART1-103,NDART1-104,NDART1-201,ADART1-27	gid1, OsGID1, Thl, Os GID1,nDART1-2,OsClpP5,nDART1-0,nDART1-1,nDART1-3(8),nDART1-3(6),nDART1-3(3-1),nDART1-3(3-2),nDART1-5,nDART1-6,nDART1-7,nDART1-9,nDART1-10,nDART1-11,nDART1-12,nDart(l)1-5,nDart(l)1-21,nDart(l)1-22,nDart(l)1-23,nDart(l)1-24,nDart(l)1-25,nDart(l)1-26,nDart1-101,nDart1-102,nDart1-103,nDart1-104,nDart1-201,aDart1-27
21894	14976253	Tsunoyama,Y., Ishizaki,Y., Morikawa,K., Kobori,M., Nakahira,Y., Takeba,G., Toyoshima,Y. and Shiina,T.	Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5.	Proc. Natl. Acad. Sci. U.S.A.	101(9)	3304-3309	2004	SIG5,YGL13	OsSIG5, OsSig5, Os Sig5,OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA
21895	8163192	Tsutsumi,K., Kagaya,Y., Hidaka,S., Suzuki,J., Tokairin,Y., Hirai,T., Hu,D.L., Ishikawa,K. and Ejiri,S.	Structural analysis of the chloroplastic and cytoplasmic aldolase-encoding genes implicated the occurrence of multiple loci in rice.	Gene	141(2)	215-220	1994	ALDCA,ALDP	AldC-a,Aldo, OsALDO, ALDO
21896	16669102	Tzeng,S.-S., Yeh,K.W., Chen,Y.M. and Lin,C.-Y.	Two Oryza sativa genomic DNA clones 16.9-kilodalton heat shock proteins	Plant Physiol.	99(4)	1723-1725	1992	HSP16.9A,HSP16.9B	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3
21897		Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.	Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)	Plant J.	2(6)	1005-1009	1992	_,GF14F,_,_,_,_,_,_,_,_,_,_,_,EIF4D,_,_,_,RPL35,RPS21,_,_,_,ANT,ADKA,_,RPL3A,AMY1B,RUBI3,_,CC1,CHT1,PDC1,_,_,SDH2,_,_,_,CALA,PGK4,RSUS1,ADH1,GRP3,EIF4A1	,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,,,,,,,,H2B,H3,,,eIF-4d, EIF4D, elF-4D,,,,OsRPL35,rps21,,,,ant, ricANC1, ANC1,Adk-a,H4,OsRPL3A, ARP1, ARP3,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,rubi3, UBQ3,OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1,OsCc1, OsCc-1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2,rig, RPS15, OsRPS15,GOS2, OseIF1, OsGOS2, SUI1, PtfS ,SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14,OsGapC1,osppdka, ppdka,OsTCTP, TCTP, OsTCTPa, OsTCTPb,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,PGK, OsPGK4,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,Adh1, Adh1/2, adh1/adh2, OsADH1,OsGRP3, RTP, RBP-152 ,eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4
21898	12242007	Uchiyama,Y., Hatanaka,M., Kimura,S., Ishibashi,T., Ueda,T., Sakakibara,Y., Matsumoto,T., Furukawa,T., Hashimoto,J. and Sakaguchi,K.	Characterization of DNA polymerase delta from a higher plant, rice (Oryza sativa L.)	Gene	295	19-26	2002	POLD2,POLD1	OsPoldelta2, OspolD2,OsPoldelta1, OspolD1
21899	15206945	Uchiyama,Y., Kimura,S., Yamamoto,T., Ishibashi,T. and Sakaguchi,K.	Plant DNA polymerase lambda, a DNA repair enzyme that functions in plant meristematic and meiotic tissues.	Eur. J. Biochem.	271(13)	2799-2807	2004	_,FEN1	OsPol lambda,OsFEN1, OsFEN-1a, FEN-1
21900	15965242	Ueda,T., Sato,T., Hidema,J., Hirouchi,T., Yamamoto,K., Kumagai,T. and Yano,M.	qUVR-10, a Major Quantitative Trait Locus for Ultraviolet-B Resistance in Rice, Encodes Cyclobutane Pyrimidine Dimer Photolyase.	Genetics	171(4)	1941-1950	2005	_	qUVR-10, OsPHR, OsCPD, CPD
21901	7551587	Ueki,J., Morioka,S., Komari,T. and Kumashiro,T.	Purification and characterization of phospholipase D (PLD) from rice (Oryza sativa L.) and cloning of cDNA for PLD from rice and maize (Zea mays L.).	Plant Cell Physiol.	36(5)	903-914	1995	PLDalpha1,PLDALPHA3	RPLD1, PLD1, OsPLDalpha1,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2
21902	10348696	Ullah,H., Robertson,D. and Fites,R.C.	A Gene for Thymidine Kinase in Plants (Accession No. AF066050). (PGR99-048)	Plant Physiol.	119(4)	1567	1999	_	TK
21904	8049371	Umeda,M., Hara,C., Matsubayashi,Y., Li,H.H., Liu,Q., Tadokoro,F., Aotsuka,S. and Uchimiya,H.	Expressed sequence tags from cultured cells of rice (Oryza sativa L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generating pathways.	Plant Mol. Biol.	25(3)	469-478	1994	_,_,25S rRNA,_,PGI1,_,_,_,_,_,_,PGK4,SDH2,TPI,ADH1,PDC1	,OsPFPB, PFPB, OsPFP-B, PFP-B, PFPbeta,25S rRNA,,Pgi1(Pgia), Pgia, Pgi_1, Pgi1, GPI-A, PHI-A, Pgi-a, PGI-a,,,,OsGapC1,,,PGK, OsPGK4,SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,Adh1, Adh1/2, adh1/adh2, OsADH1,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2
21905	9230895	Umeda,M., Fujii,N., Manabe,Y. and Uchimiya,H.	Molecular and biochemical characterization of a proteasome subunit from rice and carrot cells.	Mol. Gen. Genet.	255(1)	19-27	1997	_	OsPAF1
21906	9091324	Umeda,M., Manabe,Y. and Uchimiya,H.	Phosphorylation of the C2 subunit of the proteasome in rice (Oryza sativa L.).	FEBS Lett.	403(3)	313-317	1997	_	OsPAF1
21907	10517318	Umeda,M., Iwamoto,N., Umeda-Hara,C., Yamaguchi,M., Hashimoto,J. and Uchimiya,H.	Molecular characterization of mitotic cyclins in rice plants.	Mol. Gen. Genet.	262(2)	230-238	1999	CYCA1;1,CYCB2;2,CYCB2;1	CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1
21908	10648822	Urano,J., Nakagawa,T., Maki,Y., Masumura,T., Tanaka,K., Murata,N. and Ushimaru,T.	Molecular cloning and characterization of a rice dehydroascorbate reductase.	FEBS Lett.	466(1)	107-111	2000	DHAR1	OsDHAR1, DHAR, cytDHAR, OsDHAR
21909	11139585	Usui,Y., Nakase,M., Hotta,H., Urisu,A., Aoki,N., Kitajima,K. and Matsuda,T.	A 33-kDa allergen from rice (Oryza sativa L. Japonica). cDNA cloning, expression, and identification as a novel glyoxalase I.	J. Biol. Chem.	276(14)	11376-11381	2001	GLYI-11	OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33
21910		Vaidyanathan,R., Kuruvilla,S. and Thomas,G.	Characterization and expression pattern of an abscisic acid and osmotic stress responsive gene from rice.	Plant Sci.	140(1)	21-30	1999	ASR1,ASR2	OsAsr1, OsASR3, ASR3, Asr3,OsAsr2, OsASR4, OsASR6
21911	8666248	Valdez-Alarcon,J.J., Ferrando,M., Salerno,G., Jimenez-Moraila,B. and Herrera-Estrella,L.	Characterization of a rice sucrose-phosphate synthase-encoding gene.	Gene	170(2)	217-222	1996	SPS1	sps1, OsSPS1, SPS
21913	8194762	Vignols,F., Lund,G., Pammi,S., Tremousaygue,D., Grellet,F., Kader,J.C., Puigdomenech,P. and Delseny,M.	Characterization of a rice gene coding for a lipid transfer protein.	Gene	142(2)	265-270	1994	LTP1	Ltp1, RLTP1
21914	9305762	Vignols,F., Wigger,M., Garcia-Garrido,J.M., Grellet,F., Kader,J.C. and Delseny,M.	Rice lipid transfer protein (LTP) genes belong to a complex multigene family and are differentially regulated.	Gene	195(2)	177-186	1997	_,_,_	b21,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18
21915	1379734	Voytas,D.F., Cummings,M.P., Koniczny,A., Ausubel,F.M. and Rodermel,S.R.	copia-like retrotransposons are ubiquitous among plants.	Proc. Natl. Acad. Sci. U.S.A.	89(15)	7124-7128	1992	_	
21916	12369618	Waller,F., Furuya,M. and Nick,P.	OsARF1, an auxin response factor from rice, is auxin-regulated and classifies as a primary auxin responsive gene.	Plant Mol. Biol.	50(3)	415-425	2002	ARF1,ARF16	OsARF1, arf1, OsARF23, ARF23,OsARF16, OsARF2, OsARF1
21917	14612572	Wang,A., Xia,Q., Xie,W., Datla,R. and Selvaraj,G.	The classical Ubisch bodies carry a sporophytically produced structural protein (RAFTIN) that is essential for pollen development.	Proc. Natl. Acad. Sci. U.S.A.	100(24)	14487-14492	2003	RAFTIN1	OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1
21918	1534703	Wang,A.Y., Yu,W.P., Juang,R.H., Huang,J.W., Sung,H.Y. and Su,J.C.	Presence of three rice sucrose synthase genes as revealed by cloning and sequencing of cDNA.	Plant Mol. Biol.	18(6)	1191-1194	1992	RSUS2,RSUS1,RSUS3	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111
21919		Wang,C.S., Shastri,K., Wen,L., Huang,J.K., Sonthayanon,B., Muthukrishnan,S. and Reeck,G.R.	Heterogeneity in cDNA clones encoding rice glutelin	FEBS Lett.	222	135-138	1987	GLUA2	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
21920	14513364	Wang,G.D., Tian,P.F., Cheng,Z.K., Wu,G., Jiang,J.M., Li,D.B., Li,Q. and He,Z.H.	Genomic characterization of Rim2 / Hipa elements reveals a CACTA-like transposon superfamily with unique features in the rice genome.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	270(3)	234-242	2003	_,RIM2-228,RIM2-248,RIM2-553,_,_,_,RIM2-M54,RIM2-M55,RIM2-M56,RIM2-M57,RIM2-M58,RIM2-M59,RIM2-M60,RIM2-M61,RIM2-M62,RIM2-M63,RIM2-M1,RIM2-M2,RIM2-M3,RIM2-M4,RIM2-M5,RIM2-M6,RIM2-M7,RIM2-M8,RIM2-M9,RIM2-M10,RIM2-M11,RIM2-M12,RIM2-M13,RIM2-M14,RIM2-M15,RIM2-M16,RIM2-M17,RIM2-M18,RIM2-M19,RIM2-M20,RIM2-M21,RIM2-M22,RIM2-M23,RIM2-M24,RIM2-M25,RIM2-M26,RIM2-M27,RIM2-M28,RIM2-M29,RIM2-M30,RIM2-M31,RIM2-M32,RIM2-M33,RIM2-M34,RIM2-M35,RIM2-M36,RIM2-M37,RIM2-M38,RIM2-M39,RIM2-M40,RIM2-M41,RIM2-M42,RIM2-M43,RIM2-M44,RIM2-M45,RIM2-M46,RIM2-M47,RIM2-M48,RIM2-M49,RIM2-M50,RIM2-M51,RIM2-M52,RIM2-M64,RIM2-M65,RIM2-M66,RIM2-M67,RIM2-M68,RIM2-M69,RIM2-M70,RIM2-M71,RIM2-M72,RIM2-M73,RIM2-M74,RIM2-M75,RIM2-M76,RIM2-M77,RIM2-M78,RIM2-M79,RIM2-M80,RIM2-M81,RIM2-M82,RIM2-M83,RIM2-M84,RIM2-M85,RIM2-M86,RIM2-M87,RIM2-M88,RIM2-M89,RIM2-M90,RIM2-M91,RIM2-M92,RIM2-M93,RIM2-M94,RIM2-M95,RIM2-M96,RIM2-M97,RIM2-M98,RIM2-M99,RIM2-M100,RIM2-M101,RIM2-M102,RIM2-M103,RIM2-M104,RIM2-M105,RIM2-M106,RIM2-M107,RIM2-M108,RIM2-M109,RIM2-M110,RIM2-M111,RIM2-M112,RIM2-M113,RIM2-M114,RIM2-M115,RIM2-M116,RIM2-M117,RIM2-M118,RIM2-M119,RIM2-M120,RIM2-M121,RIM2-M122,RIM2-M123,RIM2-M124,RIM2-M125,RIM2-M126,RIM2-M127,RIM2-M128,RIM2-M129,RIM2-M130,RIM2-M131,RIM2-M132,RIM2-M133,RIM2-M134,RIM2-M135,RIM2-M136,RIM2-M137,RIM2-M138,RIM2-M139,RIM2-M140,RIM2-M141,RIM2-M142,RIM2-M143,RIM2-M144,RIM2-M145,RIM2-M146,RIM2-M147,RIM2-M148,RIM2-M149,RIM2-M150,RIM2-M151,RIM2-M152,RIM2-M153,RIM2-M154,RIM2-M155,RIM2-M156,RIM2-M157,RIM2-M158,RIM2-M159,RIM2-M160,RIM2-M161,RIM2-M162,RIM2-M163,RIM2-M164,RIM2-M165,RIM2-M171,RIM2-M172,RIM2-M173,RIM2-M193,RIM2-M194,RIM2-M199,RIM2-M200,RIM2-M201,RIM2-M202,RIM2-M203,RIM2-M215,RIM2-M216,RIM2-M217,RIM2-M218,RIM2-M229,RIM2-M230,RIM2-M231,RIM2-M232,RIM2-M166,RIM2-M167,RIM2-M168,RIM2-M169,RIM2-M170,RIM2-M174,RIM2-M175,RIM2-M176,RIM2-M177,RIM2-M178,RIM2-M179,RIM2-M180,RIM2-M181,RIM2-M182,RIM2-M183,RIM2-M184,RIM2-M185,RIM2-M186,RIM2-M187,RIM2-M188,RIM2-M189,RIM2-M190,RIM2-M191,RIM2-M192,RIM2-M195,RIM2-M196,RIM2-M197,RIM2-M198,RIM2-M204,RIM2-M205,RIM2-M206,RIM2-M207,RIM2-M208,RIM2-M209,RIM2-M210,RIM2-M211,RIM2-M212,RIM2-M213,RIM2-M214,RIM2-M219,RIM2-M220,RIM2-M221,RIM2-M222,RIM2-M223,RIM2-M224,RIM2-M225,RIM2-M226,RIM2-M227,RIM2-M228,RIM2-M233,RIM2-M234,RIM2-M235,RIM2-M236,RIM2-M237,RIM2-M238,RIM2-M239,RIM2-M240,RIM2-M241,RIM2-M242,RIM2-M243,RIM2-M244,RIM2-M245,RIM2-M246,RIM2-M247,RIM2-M248,RIM2-M249,RIM2-M250,RIM2-M251,RIM2-M252,RIM2-M253,RIM2-M254,RIM2-M255,RIM2-M256,RIM2-M257,RIM2-M258,RIM2-M259,RIM2-M260,RIM2-M261,RIM2-M262,RIM2-M263,RIM2-M264,RIM2-M265,RIM2-M266,RIM2-M267,RIM2-M268,RIM2-M269,RIM2-M270,RIM2-M271,RIM2-M272,RIM2-M273,RIM2-M274,RIM2-M275,RIM2-M276,RIM2-M277,RIM2-M278,RIM2-M279,RIM2-M280,RIM2-M281,RIM2-M282,RIM2-M283,RIM2-M284,RIM2-M285,RIM2-M286,RIM2-M287,RIM2-M288,RIM2-M289,RIM2-M290,RIM2-M291,RIM2-M292,RIM2-M293,RIM2-M294,RIM2-M295,RIM2-M296,RIM2-M297,RIM2-M298,RIM2-M299,RIM2-M300,RIM2-M301,RIM2-M302,RIM2-M303,RIM2-M304,RIM2-M305,RIM2-M306,RIM2-M307,RIM2-M308,RIM2-M309,RIM2-M310,RIM2-M311,RIM2-M312,RIM2-M313,RIM2-M314,RIM2-M315,RIM2-M316,RIM2-M317,RIM2-M318,RIM2-M319,RIM2-M320,RIM2-M321,RIM2-M322,RIM2-M323,RIM2-M324,RIM2-M325,RIM2-M326,RIM2-M327,RIM2-M328,RIM2-M329,RIM2-M330,RIM2-M331,RIM2-M332,RIM2-M333,RIM2-M334,RIM2-M335,RIM2-M336,RIM2-M337,RIM2-M338,RIM2-M339,RIM2-M340,RIM2-M341,RIM2-M343,RIM2-M342,RIM2-M344,RIM2-M53	,Rim2-228,Rim2-248,Rim2-553,,,HRGP,Rim2-M54,Rim2-M55,Rim2-M56,Rim2-M57,Rim2-M58,Rim2-M59,Rim2-M60,Rim2-M61,Rim2-M62,Rim2-M63,Rim2-M1,Rim2-M2,Rim2-M3,Rim2-M4,Rim2-M5,Rim2-M6,Rim2-M7,Rim2-M8,Rim2-M9,Rim2-M10,Rim2-M11,Rim2-M12,Rim2-M13,Rim2-M14,Rim2-M15,Rim2-M16,Rim2-M17,Rim2-M18,Rim2-M19,Rim2-M20,Rim2-M21,Rim2-M22,Rim2-M23,Rim2-M24,Rim2-M25,Rim2-M26,Rim2-M27,Rim2-M28,Rim2-M29,Rim2-M30,Rim2-M31,Rim2-M32,Rim2-M33,Rim2-M34,Rim2-M35,Rim2-M36,Rim2-M37,Rim2-M38,Rim2-M39,Rim2-M40,Rim2-M41,Rim2-M42,Rim2-M43,Rim2-M44,Rim2-M45,Rim2-M46,Rim2-M47,Rim2-M48,Rim2-M49,Rim2-M50,Rim2-M51,Rim2-M52,Rim2-M64,Rim2-M65,Rim2-M66,Rim2-M67,Rim2-M68,Rim2-M69,Rim2-M70,Rim2-M71,Rim2-M72,Rim2-M73,Rim2-M74,Rim2-M75,Rim2-M76,Rim2-M77,Rim2-M78,Rim2-M79,Rim2-M80,Rim2-M81,Rim2-M82,Rim2-M83,Rim2-M84,Rim2-M85,Rim2-M86,Rim2-M87,Rim2-M88,Rim2-M89,Rim2-M90,Rim2-M91,Rim2-M92,Rim2-M93,Rim2-M94,Rim2-M95,Rim2-M96,Rim2-M97,Rim2-M98,Rim2-M99,Rim2-M100,Rim2-M101,Rim2-M102,Rim2-M103,Rim2-M104,Rim2-M105,Rim2-M106,Rim2-M107,Rim2-M108,Rim2-M109,Rim2-M110,Rim2-M111,Rim2-M112,Rim2-M113,Rim2-M114,Rim2-M115,Rim2-M116,Rim2-M117,Rim2-M118,Rim2-M119,Rim2-M120,Rim2-M121,Rim2-M122,Rim2-M123,Rim2-M124,Rim2-M125,Rim2-M126,Rim2-M127,Rim2-M128,Rim2-M129,Rim2-M130,Rim2-M131,Rim2-M132,Rim2-M133,Rim2-M134,Rim2-M135,Rim2-M136,Rim2-M137,Rim2-M138,Rim2-M139,Rim2-M140,Rim2-M141,Rim2-M142,Rim2-M143,Rim2-M144,Rim2-M145,Rim2-M146,Rim2-M147,Rim2-M148,Rim2-M149,Rim2-M150,Rim2-M151,Rim2-M152,Rim2-M153,Rim2-M154,Rim2-M155,Rim2-M156,Rim2-M157,Rim2-M158,Rim2-M159,Rim2-M160,Rim2-M161,Rim2-M162,Rim2-M163,Rim2-M164,Rim2-M165,Rim2-M171,Rim2-M172,Rim2-M173,Rim2-M193,Rim2-M194,Rim2-M199,Rim2-M200,Rim2-M201,Rim2-M202,Rim2-M203,Rim2-M215,Rim2-M216,Rim2-M217,Rim2-M218,Rim2-M229,Rim2-M230,Rim2-M231,Rim2-M232,Rim2-M166,Rim2-M167,Rim2-M168,Rim2-M169,Rim2-M170,Rim2-M174,Rim2-M175,Rim2-M176,Rim2-M177,Rim2-M178,Rim2-M179,Rim2-M180,Rim2-M181,Rim2-M182,Rim2-M183,Rim2-M184,Rim2-M185,Rim2-M186,Rim2-M187,Rim2-M188,Rim2-M189,Rim2-M190,Rim2-M191,Rim2-M192,Rim2-M195,Rim2-M196,Rim2-M197,Rim2-M198,Rim2-M204,Rim2-M205,Rim2-M206,Rim2-M207,Rim2-M208,Rim2-M209,Rim2-M210,Rim2-M211,Rim2-M212,Rim2-M213,Rim2-M214,Rim2-M219,Rim2-M220,Rim2-M221,Rim2-M222,Rim2-M223,Rim2-M224,Rim2-M225,Rim2-M226,Rim2-M227,Rim2-M228,Rim2-M233,Rim2-M234,Rim2-M235,Rim2-M236,Rim2-M237,Rim2-M238,Rim2-M239,Rim2-M240,Rim2-M241,Rim2-M242,Rim2-M243,Rim2-M244,Rim2-M245,Rim2-M246,Rim2-M247,Rim2-M248,Rim2-M249,Rim2-M250,Rim2-M251,Rim2-M252,Rim2-M253,Rim2-M254,Rim2-M255,Rim2-M256,Rim2-M257,Rim2-M258,Rim2-M259,Rim2-M260,Rim2-M261,Rim2-M262,Rim2-M263,Rim2-M264,Rim2-M265,Rim2-M266,Rim2-M267,Rim2-M268,Rim2-M269,Rim2-M270,Rim2-M271,Rim2-M272,Rim2-M273,Rim2-M274,Rim2-M275,Rim2-M276,Rim2-M277,Rim2-M278,Rim2-M279,Rim2-M280,Rim2-M281,Rim2-M282,Rim2-M283,Rim2-M284,Rim2-M285,Rim2-M286,Rim2-M287,Rim2-M288,Rim2-M289,Rim2-M290,Rim2-M291,Rim2-M292,Rim2-M293,Rim2-M294,Rim2-M295,Rim2-M296,Rim2-M297,Rim2-M298,Rim2-M299,Rim2-M300,Rim2-M301,Rim2-M302,Rim2-M303,Rim2-M304,Rim2-M305,Rim2-M306,Rim2-M307,Rim2-M308,Rim2-M309,Rim2-M310,Rim2-M311,Rim2-M312,Rim2-M313,Rim2-M314,Rim2-M315,Rim2-M316,Rim2-M317,Rim2-M318,Rim2-M319,Rim2-M320,Rim2-M321,Rim2-M322,Rim2-M323,Rim2-M324,Rim2-M325,Rim2-M326,Rim2-M327,Rim2-M328,Rim2-M329,Rim2-M330,Rim2-M331,Rim2-M332,Rim2-M333,Rim2-M334,Rim2-M335,Rim2-M336,Rim2-M337,Rim2-M338,Rim2-M339,Rim2-M340,Rim2-M341,Rim2-M343,Rim2-M342,Rim2-M344,Rim2-M53
21921	10936527	Wang,J., Jiang,J. and Oard,J.H.	Structure, expression and promoter activity of two polyubiquitin genes from rice (Oryza sativa L.).	Plant Sci.	156(2)	201-211	2000	RUBQ2	rubq2
21922	16406238	Wang,J., Ming,F., Pittman,J., Han,Y., Hu,J., Guo,B. and Shen,D.	Characterization of a rice (Oryza sativa L.) gene encoding a temperature-dependent chloroplast omega-3 fatty acid desaturase.	Biochem. Biophys. Res. Commun.	340(4)	1209-1216	2006	FAD8	OsFAD8, Osfad8
21923	15915636	Wang,L., Pei,Z., Tian,Y. and He,C.	OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation.	Mol. Plant Microbe Interact.	18(5)	375-384	2005	_	OsLSD1, OsLOL1, OsLSD1.1, LSD1.1, LSD1
21924	1386537	Wang,M.B., Boulter,D. and Gatehouse,J.A.	A complete sequence of the rice sucrose synthase-1 (RSs1) gene.	Plant Mol. Biol.	19(5)	881-885	1992	RSUS2	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1
21927	14693376	Wang,R., Hong,G. and Han,B.	Transcript abundance of rml1, encoding a putative GT1-like factor in rice, is up-regulated by Magnaporthe grisea and down-regulated by light.	Gene	324	105-115	2004	RML1	rml1, OsRML1, OsMSL21, MSL21
21929	9154986	Wang,S., Zhang,Q., Maughan,P.J. and M.A.	Copia-like retrotransposons in rice: sequence heterogeneity, species distribution and chromosomal locations.	Plant Mol. Biol.	33(6)	1051-1058	1997	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Rrt1,Rrt2,Rrt3,Rrt4,Rrt5,Rrt6,Rrt7,Rrt8,Rrt9,Rrt10,Rrt11,Rrt12,Rrt13,Rrt14,Rrt15,Rrt16,Rrt17,Rrt18,Rrt19,Rrt20,Rrt21,Rrt22A,Rrt22B,Rrt22C,Rrt23
21932	12920519	Wang,Y.J., Zhang,Z.G., He,X.J., Zhou,H.L., Wen,Y.X., Dai,J.X., Zhang,J.S. and Chen,S.Y.	A rice transcription factor OsbHLH1 is involved in cold stress response.	Theor. Appl. Genet.	107(8)	1402-1409	2003	_	OsbHLH1, OsbHLH062 
21933	10417726	Wang,Z.X., Yano,M., Yamanouchi,U., Iwamoto,M., Monna,L., Hayasaka,H., Katayose,Y. and Sasaki,T.	The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes.	Plant J.	19(1)	55-64	1999	PIB,PIBH8,PIB2	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pib-H8, PibH8,Pib2
21934	11725950	Wang,Z.X., Yamanouchi,U., Katayose,Y., Sasaki,T. and Yano,M.	Expression of the Pib rice-blast-resistance gene family is up-regulated by environmental conditions favouring infection and by chemical signals that trigger secondary plant defences.	Plant Mol. Biol.	47(5)	653-661	2001	PIB,PIBH8,_,_	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pib-H8, PibH8,HPibH8-1,HPibH8-2
21935	2216792	Wang,Z.Y., Wu,Z.L., Xing,Y.Y., Zheng,F.G., Guo,X.L., Zhang,W.G. and Hong,M.M.	Nucleotide sequence of rice waxy gene.	Nucleic Acids Res.	18(19)	5898	1990	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21936		Wang,Z.Y., Zheng,F.Q., Gao,J.P., Wang,X.Q., Wu,M., Zhang,J.L. and Hong,M.M.	Identification of two transposon-like elements in rice Wx gene	Sci. China, Ser. B, Chem. Life Sci. Earth Sci.	37	437-447	1994	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
21937		Wasaki,J., Omura,M., Osaki,M., Ito,H., Matsui,H., Shinano,T. and Tadano,T.	Structure of a cDNA for an acid phosphatase from phosphate-deficient lupin (Lupinus albus L.) roots	Soil Sci. Plant Nutr.	45	439-449	1999		
21938	1627776	Washio,K. and Ishikawa,K.	Structure and expression during the germination of rice seeds of the gene for a carboxypeptidase.	Plant Mol. Biol.	19(4)	631-640	1992	CPD3	cbp3, R-CPD3, OsSCP6, SCP6
21939	8161571	Washio,K. and Ishikawa,K.	Cloning and sequencing of the gene for type I carboxypeptidase in rice.	Biochim. Biophys. Acta	1199(3)	311-314	1994	CPD1	cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65
21940	7972496	Washio,K. and Ishikawa,K.	Organ-specific and hormone-dependent expression of genes for serine carboxypeptidases during development and following germination of rice grains.	Plant Physiol.	105(4)	1275-1280	1994	CPD3,CPD1,CPD3L	cbp3, R-CPD3, OsSCP6, SCP6,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,R-CPD3L, cbp31, OsSCP39, SCP39
21941	10490396	Washio,K.	cDNAs encoding Dof-proteins that are present in germinated aleurone cells (Accession Nos. AB028129, AB028130, AB028131, AB028132, and AB028133). (PGR99-107)	Plant Physiol.	120(4)	1205-1207	1999	RPBF,DOF4,RDD1,DOF1,DOF5	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsDof4, OsDof8, Dof8, OsDof-8, DOF8,OsDof2, OsDof9, Dof9, OsDof-9 ,OsDof1,OsDof5
21942	12012245	Watanabe,A. and Hirai,A.	Two uncoupling protein genes of rice ( Oryza sativa L.): molecular study reveals the defects in the pre-mRNA processing for the heat-generating proteins of the subtropical cereal.	Planta.	215(1)	90-100	2002	_,_,AOX1A	OsUCP1,OsUCP2,Ao1-1, AOX1a, OsAOX1a, AOX 1a
21943	1885617	Watanabe,H., Abe,K., Emori,Y., Hosoyama,H. and Arai,S.	Molecular cloning and gibberellin-induced expression of multiple cysteine proteinases of rice seeds (oryzains).	J. Biol. Chem.	266(25)	16897-16902	1991	_,_,OCP	,,ocp*, ocp
21945	16413588	Watanabe,K., Suzuki,K. and Kitamura,S.	Characterization of a GDP-d-mannose 3'',5''-epimerase from rice.	Phytochemistry	67(4)	338-346	2006	GME	GME
21946	9171081	Weihe,A., Hedtke,B. and Borner,T.	Cloning and characterization of a cDNA encoding a bacteriophage-type RNA polymerase from the higher plant Chenopodium album.	Nucleic Acids Res.	25(12)	2319-2325	1997	RPOTP	OsRpo Tp, OsRpoTp, NEP, RpoTp
21947	12177502	Wen,J.Q., Oono,K. and Imai,R.	Two Novel Mitogen-Activated Protein Signaling Components, OsMEK1 and OsMAP1, Are Involved in a Moderate Low-Temperature Signaling Pathway in Rice.	Plant Physiol.	129(4)	1880-1891	2002	MSRMK2,MKK6,LIP19,_,MAPK4	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMKK6, OsMEK1,Lip19, lip19, OsbZIP38,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAP3, MPK14, MPK3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
21948	2587279	Wen,L., Huang,J.K., Johnson,B.H. and Reeck,G.R.	Nucleotide sequence of a cDNA that encodes a rice glutelin.	Nucleic Acids Res.	17(22)	9490	1989	GLUB1	GluB1, GluB1-A, GluB-1, OsGluB1
21949	8310050	Wen,T.N., Shyur,L.F., Su,J.C. and Chen,C.S.	Nucleotide sequence of a rice (Oryza sativa) prolamin storage protein gene, RP6.	Plant Physiol.	101(3)	1115-1116	1993	_	RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25
21950	15299118	Wilderman,P.R., Xu,M., Jin,Y., Coates,R.M. and Peters,R.J.	Identification of syn-pimara-7,15-diene synthase reveals functional clustering of terpene synthases involved in rice phytoalexin/allelochemical biosynthesis.	Plant Physiol.	135(4)	2098-2105	2004	KS4	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16
21951	2535550	Wilkins,T.A. and Raikhel,N.V.	Expression of rice lectin is governed by two temporally and spatially regulated mRNAs in developing embryos.	Plant Cell	1(5)	541-549	1989	_	
21953	11779837	Wright,D.A. and Voytas,D.F.	Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses.	Genome Res.	12(1)	122-131	2002	_,_	Gag-Pol,
21957	15037733	Wu,J., Yamagata,H., Hayashi-Tsugane,M., Hijishita,S., Fujisawa,M., Shibata,M., Ito,Y., Nakamura,M., Sakaguchi,M., Yoshihara,R., Kobayashi,H., Ito,K., Karasawa,W., Yamamoto,M., Saji,S., Katagiri,S., Kanamori,H., Namiki,N., Katayose,Y., Matsumoto,T. and Sasaki,T.?	Composition and structure of the centromeric region of rice chromosome 8.	Plant Cell	16(4)	967-976	2004		
21958	12909345	Wu,Q., Zhang,W., Pwee,K.-H. and Kumar,P.P.	Cloning and characterization of rice HMGB1 gene	Gene	312	103-109	2003	_	HMGB1, OsHMGB1
21959	12590928	Wu,Q., Zhang,W., Pwee,K.H. and Kumar,P.P.	Rice HMGB1 protein recognizes DNA structures and bends DNA efficiently.	Arch. Biochem. Biophys.	411(1)	105-111	2003	_	HMGB1, OsHMGB1
21960	2726464	Wu,S.C., Vegh,Z., Wang,X.M., Tan,C.C. and Dudits,D.	The nucleotide sequences of two rice histone H3 genes.	Nucleic Acids Res.	17(8)	3297	1989	_,_	H3R-21,H3R-11
21962	10470849	Xiao,C., Xin,H., Dong,A., Sun,C. and Cao,K.	A novel calmodulin-like protein gene in rice which has an unusual prolonged C-terminal sequence carrying a putative prenylation site.	DNA Res.	6(3)	179-181	1999	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d
21963		Xiao,F.H. and Xue,G.P.	Analysis of the promoter activity of late embryogenesis abundant protein genes in barley seedlings under conditions of water deficit	Plant Cell Rep.	20(7)	667-673	2001	WSI18,RAB16B	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,rab21, OsLEA28, OsRAB16D, OsRAB16b
21964	3412915	Xie,Y. and Wu,R.	Nucleotide sequence of a ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit gene (rbcS) in rice.	Nucleic Acids Res.	16(15)	7749	1988	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
21965	2562760	Xie,Y. and Wu,R.	Rice alcohol dehydrogenase genes: anaerobic induction, organ specific expression and characterization of cDNA clones.	Plant Mol. Biol.	13(1)	53-68	1989	ADH1,ADH2	Adh1, Adh1/2, adh1/adh2, OsADH1,Adh2*, Adh2
21966	2332167	Xie,Y. and Wu,R.	Molecular analysis of an alcohol dehydrogenase-encoding genomic clone (adh2) from rice.	Gene	87(2)	185-191	1990	ADH2	Adh2*, Adh2
21968	12615946	Xiong,L. and Yang,Y.	Disease Resistance and Abiotic Stress Tolerance in Rice Are Inversely Modulated by an Abscisic Acid-Inducible Mitogen-Activated Protein Kinase.	Plant Cell	15(3)	745-759	2003	MSRMK2,PR10A	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
21970	7590339	Xu,H., Theerakulpisut,P., Goulding,N., Suphioglu,C., Singh,M.B. and Bhalla,P.L.	Cloning, expression and immunological characterization of Ory s 1, the major allergen of rice pollen.	Gene	164(2)	255-259	1995	EXPB1A	OsEXPB1, EXPB1a, OsaEXPb1.2, Ory s I, EXPB1.1, Ory s 1
21971	15255861	Xu,M., Hillwig,M.L., Prisic,S., Coates,R.M. and Peters,R.J.	Functional identification of rice syn-copalyl diphosphate synthase and its role in initiating biosynthesis of diterpenoid phytoalexin/allelopathic natural products.	Plant J.	39(3)	309-318	2004	CPS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4
21972	8278510	Xu,Y. and Hall,T.C.	Cytosolic triosephosphate isomerase is a single gene in rice.	Plant Physiol.	101(2)	683-687	1993	TPI	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 
21973	8108523	Xu,Y., Harris-Haller,L.W., McCollum,J.C., Hardin,S.H. and Hall,T.C.	Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).	Plant Physiol.	102(2)	697	1993	TPI	tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 
21974	7888615	Xu,Y., Buchholz,W.G., DeRose,R.T. and Hall,T.C.	Characterization of a rice gene family encoding root-specific proteins.	Plant Mol. Biol.	27(2)	237-248	1995	_,_	RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3,RCc2, RCg2, OsHyPRP13, HyP/GRP13, OsRCg2
21975	8605293	Xu,Y., Zhu,Q., Panbangred,W., Shirasu,K. and Lamb,C.	Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.).	Plant Mol. Biol.	30(3)	387-401	1996	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1
21976		Xue,Y., Tang,D., Zhang,Y. and Li,W.	Isolation of candidate R disease resistance genes from rice	Chin. Sci. Bull.	43	497-500	1998	_,_,_,_,_	Osh359-1,Osh359-3, Osh359-5,Os8558-3, Os8558-8,Os8558-12,Osh359-2
21977	1368338	Yamagata,H., Nomura,T., Arai,S., Tanaka,K. and Iwasaki,T.	Nucleotide sequence of a cDNA that encodes a rice prolamin.	Biosci. Biotechnol. Biochem.	56(3)	537	1992	_	Prol-21, pro13b.2, PROLM20
21978	11055401	Yamagata,H., Uesugi,M., Saka,K., Iwasaki,T. and Aizono,Y.	Molecular cloning and characterization of a cDNA and a gene for subtilisin-like serine proteases from rice (Oryza sativa L.) and Arabidopsis thaliana.	Biosci. Biotechnol. Biochem.	64(9)	1947-1957	2000	_	RSP1, OsSub5, SUB5, OsSub6, SUB6
21979	12162569	Yamaguchi,T., Nakayama,K., Hayashi,T., Tanaka,Y. and Koike,S.	Molecular Cloning and Characterization of a Novel beta-1,3-glucanase Gene from Rice	Biosci. Biotechnol. Biochem.	66(6)	1403-1406	2002	_	Osg1, g1
21980	14729915	Yamaguchi,T., Nagasawa,N., Kawasaki,S., Matsuoka,M., Nagato,Y. and Hirano,H.Y.	The YABBY Gene DROOPING LEAF Regulates Carpel Specification and Midrib Development in Oryza sativa.	Plant Cell	16(2)	500-509	2004	DL	DL, dl(lop), lop, dl, dl1
21981	15215597	Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.	cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.	Biosci. Biotechnol. Biochem.	68(6)	1315-1323	2004	_,DOF4,OPR1,_,_,_,_,EF1G,_,_,_,_,_,_,RPS7,RPL18,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RPS8,_,_,_,RPL7,RCS3,SAMDC,_,_,_,MTI3A,BEL,ALDH11A3,_,RPL2,RPS4,RPL18A,CIPK01,_,OSH1,GRAS3,RSUS2,XDH1,_,OPR4,_,OC1,ATG8C,_,_,_,_,BETACA1,_,FER2,SAP8,HXK7,GLN1;1,GRX6,_,APX1,SALT,AMY3D,_,_,AP37 ,_,_,GLP8-3,NAC6,_	SAMDC1, SAMDC, OsSAMDC4,OsDof4, OsDof8, Dof8, OsDof-8, DOF8,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,SUI1,,HMGR III, Hmg3, HMGR3, HMGR 3, OsHMGR3,OsWD40-97,,OsARP, OsCTP,OsWD40-125,OsAP1,Os SBP, OsSBP,OSINV2, OsINV2, OsVIN1,C10501,rps7,rpl18,,,,,,,NFR,,,,,,,,,,,,,,,rps8,OsSK1,Ubi1,,rpl7,rcs3,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1,ACX2, OsACX2,prx86, PRX86, OsPRX86,,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6,OsALDH11A3, GAPN,rig, RPS15, OsRPS15,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,rps4, RPS4a ,rpl18a, RPL18a, OsRPL18a,OsCIPK01, CIPK1, OsCIPK1,OsSAHH, SAHH,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,OsXDH1,GOS2, OseIF1, OsGOS2, SUI1, PtfS ,OsOPR4, OsOPR10, OsOPR06-3,OsAAE3, AAE3, OsOCS, OCS ,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1,OsATG8c,WZF1,,VLN2, OsVLN2, Os VLN2,Os CCC1, OsCCC1, CCC1, OsLAT9 ,OsCA, CA, OsbetaCA1, betaCA1,OsACBP1, ACBP1,OsFER2, OsFer2,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsHXK7,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGRX6, OsGrx_I1, Grx_I1,OsMS2, MS2, OsDPW, DPW, DPW1,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,OsAP37,OsAP25, Radc1, AP25,OsRBX1b, RBX1b,OsGLP8-3, GER2,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsI57, I57, OsKAT1, KAT1
21982	14733924	Yamamoto,T., Mori,Y., Ishibashi,T., Uchiyama,Y., Sakaguchi,N., Furukawa,T., Hashimoto,J., Kimura,S. and Sakaguchi,K.	Characterization of Rad6 from a higher plant, rice (Oryza sativa L.) and its interaction with Sgt1, a subunit of the SCF ubiquitin ligase complex.	Biochem. Biophys. Res. Commun.	314(2)	434-439	2004	_,_	Rad6, OsRad6, Dhr6, OsUBC9, UBC9,OsSgt1, SGT1, OsSGT1, Os SGT1
21983	12032317	Yamanouchi,U., Yano,M., Lin,H., Ashikari,M. and Yamada,K.	A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein.	Proc. Natl. Acad. Sci. U.S.A.	99(11)	7530-7535	2002	SPL7	spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1
21984	10517861	Yan,B., Ma,Z.G., Song,L.R., Wang,L.X., Zhao,Y.C. and Huang,X.Q.	Sequence of a resistance gene homologue from Oryza officinals wall (Acc. No. AJ246006). (PGR99-152)	Plant Physiol.	121(2)	686	1999		
21985	12471446	Yan,L., Echenique,V., Busso,C., SanMiguel,P., Ramakrishna,W., Bennetzen,J.L., Harrington,S. and Dubcovsky,J.	Cereal genes similar to Snf2 define a new subfamily that includes human and mouse genes.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(4)	488-499	2002	_	Snf2P, OsSnf2P
21986		Yanagawa,Y., Ueda,T., Yamamoto,K., Sasaki,T., Tanaka,K., Hashimoto,J., Sato,T. and Nakagawa,H.	Cloning and sequencing of cDNA from Oryza sativa encoding a homolog to non-ATPase subunit, MBP1, of 26S proteasome in Arabidopsis thaliana	Plant Biotechnol.	15(3)	147-150	1998	_	OsS5a, S5a, OsRpn10, Rpn10
21987	11572990	Yang,D., Wu,L., Hwang,Y.S., Chen,L. and Huang,N.	Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.	Proc. Natl. Acad. Sci. U.S.A.	98(20)	11438-11443	2001	REB	OsZIP33, RISBZ2, OsbZIP33
21988	15061077	Yang,G. and Komatsu,S.	Molecular cloning and characterization of a novel brassinolide enhanced gene OsBLE1 in Oryza sativa seedlings.	Plant Physiol. Biochem.	42(1)	1-6	2004	_	OsBLE1 
21989	11713671	Yang,G., Dong,J., Chandrasekharan,M.B. and Hall,T.C.	Kiddo, a new transposable element family closely associated with rice genes.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	266(3)	417-424	2001	KIDDO,RUBQ2	Kiddo,rubq2, rub1, Ubq1, Rubq1, UBQ10 
21990	13677471	Yang,G., Matsuoka,M., Iwasaki,Y. and Komatsu,S.	A novel brassinolide-enhanced gene identified by cDNA microarray is involved in the growth of rice.	Plant Mol. Biol.	52(4)	843-854	2003	BLE2	OsBLE2
21991		Yang,G., Shen,S., Yang,S. and Komatsu,S.	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced in response to cold and gibberellin	Plant Physiol. Biochem.	41(4)	369-374	2003	CDPK7	OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13
21992	15805485	Yang,G., Lee,Y.H., Jiang,Y., Shi,X., Kertbundit,S. and Hall,T.C.	A Two-Edged Role for the Transposable Element Kiddo in the rice ubiquitin2 Promoter	Plant Cell	17(5)	1559-1568	2005	KIDDO,MDM1,RUBQ2	Kiddo,MDM1,rubq2, rub1, Ubq1, Rubq1, UBQ10 
21993	10557360	Yang,H., Matsubayashi,Y., Nakamura,K. and Sakagami,Y.	Oryza sativa PSK gene encodes a precursor of phytosulfokine-alpha, a sulfated peptide growth factor found in plants.	Proc. Natl. Acad. Sci. U.S.A.	96(23)	13560-13565	1999	PSK	OsPSK, PSK-alpha, PSK-beta
21994	11198424	Yang,H., Matsubayashi,Y., Hanai,H., Nakamura,K. and Sakagami,Y.	Molecular cloning and characterization of OsPSK, a gene encoding a precursor for phytosulfokine-alpha, required for rice cell proliferation.	Plant Mol. Biol.	44(5)	635-647	2000	PSK	OsPSK, PSK-alpha, PSK-beta
21995	12369615	Yang,H.J., Shen,H., Chen,L., Xing,Y.Y., Wang,Z.Y., Zhang,J.L. and Hong,M.M.	The OsEBP-89 gene of rice encodes a putative EREBP transcription factor and is temporally expressed in developing endosperm and intercalary meristem.	Plant Mol. Biol.	50(3)	379-391	2002	EBP-89	OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89
21996	12091716	Yang,J.Y., Chung,M.C., Tu,C.Y. and Leu,W.M.	OSTF1: A HD-GL2 Family Homeobox Gene is Developmentally Regulated During Early Embryogenesis in Rice.	Plant Cell Physiol.	43(6)	628-638	2002	TF1	OSTF1(t), OsTF1
21998	8260630	Yano,A., Shimazaki,T., Kato,A., Umeda,M. and Uchimiya,H.	Molecular cloning and nucleotide sequence cDNA encoding nucleoside diphosphate kinase of rice (Oryza sativa L.).	Plant Mol. Biol.	23(5)	1087-1090	1993	_	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
21999	11148291	Yano,M., Katayose,Y., Ashikari,M., Yamanouchi,U., Monna,L., Fuse,T., Baba,T., Yamamoto,K., Umehara,Y., Nagamura,Y. and Sasaki,T.	Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.	Plant Cell	12(12)	2473-2483	2000	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
22001		Yau,C.P., Zhuang,C.X. and Zee,S.Y.	Isolation of a Full Length cDNA Encoding a CER1 Homolog in Rice (Accession No. AF143746). (PGR99-104)	Plant Physiol.	120(3)	935	1999	_	OS-CER1, CER1
22002		Yau,C.P., Zhuang,C.X. and Zee,S.Y.	Molecular Cloning of a Full Length cDNA Encoding Aldehyde Dehydrogenase-Like Protein in Rice (Accession No : AF148877). (PGR99-112)	Plant Physiol.	120(4)	1206	1999	ALDH3E1	OS-ALDH, OsALDH3E1
22003	14754915	Yau,C.P., Wang,L., Yu,M., Zee,S.Y. and Yip,W.K.	Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions.	J. Exp. Bot.	55(397)	547-556	2004	ETR3,ETR4,ERS2,ETR2,ERS1	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2,PK3, OsPK3, OsETR4, OS-ETR4,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS
22004	15078336	Ye,R., Yao,Q.H., Xu,Z.H. and Xue,H.W.	Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.	Plant J.	38(2)	348-357	2004	NAC91,_,EIL1,_,_,_,_,_,_,_,AP2/EREBP131,ERF72,ERF61,_,_,_,C3H50,_,_,_,_,_,_,_,GRF6,ERF68,HSFA9,WRKY37,XB15,GRF5,_,_,HOX5,_,GS2	ONAC091, ONAC91,,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a,,,,,,,,AP2/EREBP#131,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,,,,OsC3H50, OsTZF6, OsCCCH-Zn-6,OsFbox304, Os_F0494,,,,,OsCBSCBS4, OsCBSCBS4a, OsCBSCBS4b, OsCBSCBS4c, OsCBSCBS4d, OsCBSCBS4e,OsbHLH090,OsGRF6,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, HSF8, OsHsfA8, HsfA8 ,OsWRKY37,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsGRF5,R2R3-MYB,Ose705,Oshox5, OsHox5, EIP9,PAKRP1, OsKRP1, SIP18 ,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2
22005	16006597	Yi,K., Wu,Z., Zhou,J., Du,L., Guo,L., Wu,Y. and Wu,P.	OsPTF1, A Novel Transcription Factor Involved in Tolerance to Phosphate Starvation in Rice.	Plant Physiol.	138(4)	2087-2096	2005	PTF1	OsPTF1, OsbHLH096
22006	9311985	Yin,Y., Zhu,Q., Dai,S., Lamb,C. and Beachy,R.N.	RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development.	EMBO J.	16(17)	5247-5259	1997	RF2A	RF2a, OsbZIP75
22007	9491803	Yokoi,M., Ito,M., Izumi,M., Miyazawa,H., Nakai,H. and Hanaoka,F.	Molecular cloning of the cDNA for the catalytic subunit of plant DNA polymerase alpha and its cell-cycle dependent expression.	Genes Cells	2(11)	695-709	1997	_	OSPOLA, Ospolalpha
22008	8589938	Yoshiba,Y., Yamaguchi-Shinozaki,K., Shinozaki,K. and Harada,Y.	Characterization of a cDNA clone encoding 23 kDa polypeptide of the oxygen-evolving complex of photosystem II in rice.	Plant Cell Physiol.	36(8)	1677-1682	1995	_	
22009	9880347	Yoshida,K.T., Wada,T., Koyama,H., Mizobuchi-Fukuoka,R. and Naito,S.	Temporal and spatial patterns of accumulation of the transcript of Myo-inositol-1-phosphate synthase and phytin-containing particles during seed development in rice.	Plant Physiol.	119(1)	65-72	1999	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
22010	11975732	Yoshida,K.T., Fujiwara,T. and Naito,S.	The synergistic effects of sugar and abscisic acid on myo-inositol-1-phosphate synthase expression.	Physiol. Plantarum	114(4)	581-587	2002	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
22011	14634157	Yoshikawa,M., Yang,G., Kawaguchi,K. and Komatsu,S.	Expression Analyses of beta-tubulin Isotype Genes in Rice.	Plant Cell Physiol.	44(11)	1202-1207	2003	TUB2,TUB8,TUB7,TUB1,TUB5,TUB6,TUB3,TUB4	OsTUB2, TUBB2,OsTUB8, TUBB8,OsTUB7, TUBB7, pTUB22,OsTUB1, TUBB1, OSTB-34,OsTUB5, TUBB5, OSTB-50, R2242,OsTUB6, TUBB6,OsTUB3, TUBB3, RTUB-2,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16
22012	9465073	Yoshimura,S., Yamanouchi,U., Katayose,Y., Toki,S., Wang,Z.X., Kono,I., Kurata,N., Yano,M., Iwata,N. and Sasaki,T.	Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation.	Proc. Natl. Acad. Sci. U.S.A.	95(4)	1663-1668	1998	XA1	Xa1(Xe), Xe, Xa1, Xa-1
22013	8455556	Youssefian,S., Nakamura,M. and Sano,H.	Molecular characterization of rgp2, a gene encoding a small GTP-binding protein from rice.	Mol. Gen. Genet.	237(1-2)	187-192	1993	RGP1,RGP2	rgp1, OsRab11E2,rgp2, OsRab11B1
22014	10811811	Yu,E.Y., Kim,S.E., Kim,J.H., Ko,J.H., Cho,M.H. and Chung,I.K.	Sequence-specific DNA recognition by the Myb-like domain of plant telomeric protein RTBP1.	J. Biol. Chem.	275(31)	24208-24214	2000	RTBP1	rtbp1, TBP1, OsTBP1
22015	11233258	Yu,F.T., Zhang,A.M., Chen,S.Y. and Zhang,F.S.	Differential accumulation of the new high-affinity phosphate transporter candidated gene fragment in rice roots in response to phosphorus deficiency stress	Acta Genetica Sinica	28(2)	144-151	2001	PT3	OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3
22016	9461411	Yu,L.H., Umeda,M., Liu,J.Y., Zhao,N.M. and Uchimiya,H.	A novel MT gene of rice plants is strongly expressed in the node portion of the stem.	Gene	206(1)	29-35	1998	MTI2B	OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2
22018	11247601	Yu,S., Lei,H., Chang,W., Soll,D. and Hong,G.	Protein phosphatase 2A: identification in Oryza sativa of the gene encoding the regulatory A subunit.	Plant Mol. Biol.	45(1)	107-112	2001	PP2A-A	PP2A-A, RPA1
22019	1531032	Yu,W.P., Wang,A.Y., Juang,R.H., Sung,H.Y. and Su,J.C.	Isolation and sequences of rice sucrose synthase cDNA and genomic DNA.	Plant Mol. Biol.	18(1)	139-142	1992	RSUS1	sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2
22020	12207219	Yuan,Q., Hill,J., Hsiao,J., Moffat,K., Ouyang,S., Cheng,Z., Jiang,J. and Buell,C.R.	Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	267(6)	713-720	2002	GSTU24,GSTU23,GSTU28,_,_,_,GSTU13,GSTU26,GSTU30,GSTU9,GSTU14,GSTU3,GSTU4,_,GSTU20,_,_,_,_,_,_,_,_,_,_,_,_,GSTU2,GSTU15,GSTU18,GSTU19,GSTU25,_,GSTU27,GSTU22,GSTU8,GSTU12	OsGSTU24,OsGSTU23,OsGSTU28,GST,GST.p,GST.p,OsGSTU13,OsGSTU26,OsGSTU30,OsGSTU9,OsGSTU14,OsGSTU3, OsGSTU29, GSTU29,OsGSTU4,GST,OsGSTU20,rpoC2,atpF,RPS2,atpH,rps14,,psaA,rps4,ndhJ,atpA,ndhC,,OsGSTU2, ParC,OsGSTU15,OsGSTU18, OsGSTU7, GSTU7,OsGSTU19, GSTU6, OsGSTU6.1, GSTU6.1,OsGSTU25,atpI,OsGSTU27,OsGSTU22,OsGSTU8, OsGST35, GST35,OsGSTU12, OsGSTU6.2, GSTU6.2
22021		Yuan,Z., Qian,X., Liu,J., Liu,J., Qian,M., Yang,J. and Liu,J.	Cloning and characterization of two cDNAs encoding rice MADS box protein	Prog. Nat. Sci.	10	357-363	2000	MADS2,MADS17	OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMADS17, NMADS3, RMADS213, nmads3
22022	8389618	Zarembinski,T.I. and Theologis,A.	Anaerobiosis and plant growth hormones induce two genes encoding 1-aminocyclopropane-1-carboxylate synthase in rice (Oryza sativa L.).	Mol. Biol. Cell	4(4)	363-373	1993	ACS2,ACS3,ACS4,ACS5,ACS1	OsACS2, Os-ACS2,ACC3*, ACC3, OsACS3, OS-ACS3,OsACS4, OS-ACS4,OsACS5, OS-ACS5, OsBphi008a,ACC1*, OsACS1, Os-ACS1, ACC1
22023	15377756	Zeng,L.R., Qu,S., Bordeos,A., Yang,C., Baraoidan,M., Yan,H., Xie,Q., Nahm,B.H., Leung,H. and Wang,G.L.	Spotted leaf11, a Negative Regulator of Plant Cell Death and Defense, Encodes a U-Box/Armadillo Repeat Protein Endowed with E3 Ubiquitin Ligase Activity.	Plant Cell	16(10)	2795-2808	2004	SPL11	spl11, spl11*, OsPUB11, PUB11
22024		Zhang,J.-S., Xie,C., Li,Z.-Y. and Chen,S.Y.	Expression of plasma membrane H+ -ATPase gene in response to salt stress in a rice salt-tolerant mutant and its original variety	Theor. Appl. Genet.	99(6)	1006-1011	1999	AHA3	OSA3, OsA3, osAHA3, AHA3, PAM3
22025	12160464	Zhang,L., Liu,B.-F., Liang,S., Jones,R.L. and Lu,Y.-T.	Molecular and biochemical characterization of a calcium/calmodulin-binding protein kinase from rice.	Biochem. J.	368(Pt 1)	145-157	2002	CRK1	OsCRK1, OsCBK, CBK
22027	14730075	Zhang,M.Y., Bourbouloux,A., Cagnac,O., Srikanth,C.V., Rentsch,D., Bachhawat,A.K. and Delrot,S.	A Novel Family of Transporters Mediating the Transport of Glutathione Derivatives in Plants.	Plant Physiol.	134(1)	482-491	2004	_	OsOPT3, OsGT1
22029	16255173	Zhang,T., Wang,Q., Chen,X., Tian,C., Wang,X., Xing,T., Li,Y. and Wang,Y.	Cloning and biochemical properties of CDPK gene OsCDPK14 from rice	J. Plant Physiol.	162(10)	1149-1159	2005	CDPK24	OsCDPK24, OsCPK24, OsCDPK14
22030	1347144	Zhao,X. and Kochert,G.	Characterization and genetic mapping of a short, highly repeated, interspersed DNA sequence from rice (Oryza sativa L.).	Mol. Gen. Genet.	231(3)	353-359	1992		
22031	2235510	Zhao,Y., Kung,S.D. and Dube,S.K.	Nucleotide sequence of rice 4-coumarate:CoA ligase gene, 4-CL.1.	Nucleic Acids Res.	18(20)	6144	1990	4CL1	Os4CL1, 4-CL, 4-CL. 1
22032	8142020	Zhou,X.J. and Fan,Y.L.	5'-flanking region responsible for endosperm-specific expression of rice prolamine chimeric gene in transgenic tobacco.	Sci. China, Ser. B, Chem. Life Sci. Earth Sci.	36(11)	1307-1314	1993	_	PG5b, Prol-08, pro13b.14
22033	8877110	Zhou,Z., Zhu,Z., Chen,R., Liu,C. and Li,X.	High level expression of oryzacystatin in Escherichia coli.	Chin. J. Biotechnol.	12(1)	17-24	1996	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
22035	15948847	Zhu,Q. and Ge,S.	Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes.	New Phytol.	167(1)	249-265	2005	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
22036	8534851	Zhu,Q., Dabi,T., Beeche,A., Yamamoto,R., Lawton,M.A. and Lamb,C.	Cloning and properties of a rice gene encoding phenylalanine ammonia-lyase.	Plant Mol. Biol.	29(3)	535-550	1995	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
22037	11971135	Zhu,Q., Ordiz,M.I., Dabi,T., Beachy,R.N. and Lamb,C.	Rice TATA Binding Protein Interacts Functionally with Transcription Factor IIB and the RF2a bZIP Transcriptional Activator in an Enhanced Plant in Vitro Transcription System.	Plant Cell	14(4)	795-803	2002	_,_,PAL1	OsTBP2,OsTFIIB,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
22039	16299167	Zhu,S., Gao,F., Cao,X., Chen,M., Ye,G., Wei,C. and Li,Y.	The Rice Dwarf Virus P2 Protein Interacts with ent-Kaurene Oxidases in Vivo, Leading to Reduced Biosynthesis of Gibberellins and Rice Dwarf Symptoms.	Plant Physiol.	139(4)	1935-1945	2005	KO1,KO5,D35,KO4	OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsKO5, OSKOL5, KOS2, CYP701A9,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2
22040	12947109	Zhu,Y., Cai,X.L., Wang,Z.Y. and Hong,M.M.	An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene.	J. Biol. Chem.	278(48)	47803-47811	2003	WX1,EBP-89,_	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89,OsBP-5
22042	10447467	Zhuang,C.X., Yau,C.P. and Zee,S.Y.	The Electronic Plant Gene Register.	Plant Physiol.	120(2)	633-635	1999	_	OsTKPR1, OsDFR2, OS-DFR2, OsDFR2A
22044	16109971	Rice Chromosome 3 Sequencing Consortium	Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.	Genome Res.	15(9)	1284-1291	2005		
22047	16120687	Abiko,T., Obara,M., Ushioda,A., Hayakawa,T., Hodges,M. and Yamaya,T.	Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase.	Plant Cell Physiol.	46(10)	1724-1734	2005	IDHA,GDH3,IDHC,GDH2,GDH1	OsIDHa,OsGDH3,OsIDHc;2, IDHc;2,OsGDH2,OsGDH1
22051		Akiyama,T. and Pillai,M.A.	Molecular cloning, characterization and in vitro expression of a novel endo-1,3-beta-glucanase up-regulated by ABA and drought stress in rice (Oryza sativa L.)	Plant Sci.	161(6)	1089-1098	2001	_	OsGLN1
22055		Aoki,H., Kumada,H.O., Masumura,T., Tanaka,K. and Ida,S.	Cloning and nucleotide sequence of a cDNA encoding rice embryo ferredoxin-NADP+ oxidoreductase	Plant Physiol.	112	1399	1996	_	
22058		Binmei,L., Jiping,T., Jinde,W., Zengliang,Y., Ying,Z., Leya,Z., Dehong,S., Can,C., Mei,S. and Yuejin,W.	Moleculer Biological Identification of Rice(Japonica) Dominant Semi-dwarf Mutatant	Mol. Plant Breed.(Chinese)	2(3)	326-330	2004		
22062		Che,F.S., Entani,T., Marumoto,T., Taniguchi,M., Takayama,S. and Isogai,A.	Identification of novel genes differentially expressed in compatible and incompatible interactions between rice and Pseudomonas avenae	Plant Sci.	162(3)	449-458	2002	_,_,_	IAI1,IAI2,CAI1
22066		Chen,P.W. and Chen,L.J.	A rice embryo-specific cDNA (Accession No. U57641) encoding a late embryogenesis abundant group 3 protein (PGR96-049)	Plant Physiol.	111	1353	1996		
22068		Chen,X.H., Liu,Q.Q., Wu,H.K., Wang,Z.Y. and Gu,M.H.	cDNA Cloning and Sequence Analysis of Rice Sbe1 and Sbe3 Genes	Zhongguo Shuidao Kexue	17	109-112	2003	SBE1,SBE3	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
22070	15759120	Cho,J.I., Lee,S.K., Ko,S., Kim,H.K., Jun,S.H., Lee,Y.H., Bhoo,S.H., Lee,K.W., An,G., Hahn,T.R. and Jeon,J.S.	Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.).	Plant Cell Rep.	24(4)	225-236	2005	CIN5,GIF1,CIN1,_,_,CIN8.P,CIN6,_	OsCIN5, OsCIN6,gif1, CIN2, OsCIN2, OsGIF1,OSCIN1, OsCIN1,OSINV4, OsINV4, INV4, OsCIN3,OSINV1, OsINV1, INV1, OsCIN7, OsCIN8,OsCIN8, OsCIN8.P, CIN8,OsCIN6, OsCIN7, CIN7,OsCIN4, CIN4, OsCIN5, CIN5
22071	16552590	Cho,J.I., Ryoo,N., Ko,S., Lee,S.K., Lee,J., Jung,K.H., Lee,Y.H., Bhoo,S.H., Winderickx,J., An,G., Hahn,T.R. and Jeon,J.S.	Structure, expression, and functional analysis of the hexokinase gene family in rice (Oryza sativa L.).	Planta.	224(3)	598-611	2006	HXK7,HXK4,HXK8,HXK9,HXK2,HXK1,HXK3,HXK10,HXK6,HXK5	OsHXK7,OsHXK4,OsHXK8,OsHXK9,OsHXK2,OsHXK1,OsHXK3,OsHXK10,OsHXK6,OsHXK5
22072	16192280	Choi,M.S., Kim,M.C., Yoo,J.H., Moon,B.C., Koo,S.C., Park,B.O., Lee,J.H., Koo,Y.D., Han,H.J., Lee,S.Y., Chung,W.S., Lim,C.O. and Cho,M.J.	Isolation of a Calmodulin-binding Transcription Factor from Rice (Oryza sativa L.).	J. Biol. Chem.	280(49)	40820-40831	2005	_,_,_,_,_,_,_	,,,,OsCBT, CBT,CAMTA, qSCT1,
22074	16648463	Chu,Z., Yuan,M., Yao,J., Ge,X., Yuan,B., Xu,C., Li,X., Fu,B., Li,Z., Bennetzen,J.L., Zhang,Q. and Wang,S.	Promoter mutations of an essential gene for pollen development result in disease resistance in rice.	Genes Dev.	20(10)	1250-1255	2006	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
22075		Chung,Y.-Y., Kim,S.-R., Kang,H.-G., Noh,Y.-S., Park,M.C. and An,G.	Characterization of two rice MADS box genes homologous to GLOBOSA	Plant Sci.	109	45-56	1995	MADS4,MADS2	OsMADS4, PI1,OsMADS2, RMADS219, NMADS1, PI2, nmads1 
22078		Cooper,B., Hutchison,D., Park,S., Guimil,S., Luginbuhl,P., Goff,S. and Glazebrook,J.	Identification of rice proteins linked to the cyclin mediated regulation of the cell cycle	Plant Mol. Biol.			2003		
22081		Doyama,N., Kajiwara,H. and Ida,S.	Cloning and expression of a ferredoxin gene in rice roots in response to nitrate and ammonium	Plant Sci.	137(1)	53-62	1998	_	Fd, OsFd4, Fd4
22082	16753815	Du,X., Qian,X., Wang,D. and Yang,J.	Alternative splicing and expression analysis of OsFCA (FCA in Oryza sativa L.), a gene homologous to FCA in Arabidopsis.	DNA Seq.	17(1)	31-40	2006	FCA	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma
22083	16827922	Duan,K., Li,L., Hu,P., Xu,S.P., Xu,Z.H. and Xue,H.W.	A brassinolide-suppressed rice MADS-box transcription factor, OsMDP1, has a negative regulatory role in BR signaling.	Plant J.	47(4)	519-531	2006	XTH2,HBD2,MADS47,XTH9	OsXTH2, XTR1, OsXTR1,OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1,OsMADS47, OsMDP1, MDP, MDP1,OsXTH9, OsXET9, XTH1, OsXTH1
22084	16453132	Fan,C., Xing,Y., Mao,H., Lu,T., Han,B., Xu,C., Li,X. and Zhang,Q.	GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein.	Theor. Appl. Genet.	112(6)	1164-1171	2006	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
22086	16733757	Fujisawa,M., Yamagata,H., Kamiya,K., Nakamura,M., Saji,S., Kanamori,H., Wu,J., Matsumoto,T. and Sasaki,T.	Sequence comparison of distal and proximal ribosomal DNA arrays in rice (Oryza sativa L.) chromosome 9S and analysis of their flanking regions.	Theor. Appl. Genet.	113(3)	419-428	2006	25S rRNA,18S rRNA,5.8S rRNA	25S rRNA,18S rRNA,5.8S rRNA
22087	16762031	Fukayama,H., Tamai,T., Taniguchi,Y., Sullivan,S., Miyao,M. and Nimmo,H.G.	Characterization and functional analysis of phosphoenolpyruvate carboxylase kinase genes in rice.	Plant J.	47(2)	258-268	2006	PPCK3,PPCK1,PPCK2	OsPPCK3,OsPPCK1,OsPPCK2, OsPPCK2L, OsPPCK2S
22090	16905871	Furukawa,T., Sakaguchi,N. and Shimada,H.	Two OsGASR genes, rice GAST homologue genes that are abundant in proliferating tissues, show different expression patterns in developing panicles.	Genes Genet. Syst.	81(3)	171-180	2006	_,_	OsGASR2, GASR2,OsGASR1, GASR1
22093	11935018	Goff,S.A., Ricke,D., Lan,T.H., Presting,G., Wang,R., Dunn,M., Glazebrook,J., Sessions,A., Oeller,P., Varma,H., Hadley,D., Hutchison,D., Martin,C., Katagiri,F., Lange,B.M., Moughamer,T., Xia,Y., Budworth,P., Zhong,J., Miguel,T., Paszkowski,U., Zhang,S., Colbert,M., Sun,W.L., Chen,L., Cooper,B., Park,S., Wood,T.C., Mao,L., Quail,P., Wing,R., Dean,R., Yu,Y., Zharkikh,A., Shen,R., Sahasrabudhe,S., Thomas,A., Cannings,R., Gutin,A., Pruss,D., Reid,J., Tavtigian,S., Mitchell,J., Eldredge,G., Scholl,T., Miller,R.M., Bhatnagar,S., Adey,N., Rubano,T., Tusneem,N., Robinson,R., Feldhaus,J., Macalma,T., Oliphant,A. and Briggs,S.	A draft sequence of the rice genome (Oryza sativa L. ssp. japonica).	Science	296(5565)	92-100	2002		
22095		Gu,Z., Wang,J., Huang,J. and Zhang,H.	Cloning and characterization of a novel rice gene family encoding putative dual-specificity protein kinases, involved in plant responses to abiotic and biotic stresses	Plant Sci.	169(3)	470-477	2005	_,_,_,_	OsDPK3,OsDPK4,OsDPK2, stk,OsDPK1, DPK1, MKKK32, OsMKKK32, MAPKKK32
22096		Guo,Y.L. and Ge,S.	Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes	Am. J. Bot.	92(9)	1548-1558	2005	_,NAD1,ADH2,D1,_	matK, ORF542 ,nad1, nadI, nadIB,Adh2*, Adh2,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,trnL(AAC), trnL
22097	11459218	Ha,S.H., Lee,S.W., Kim,Y.M. and Hwang,Y.S.	Molecular characterization of Hmg2 gene encoding a 3-hydroxy-methylglutaryl-CoA reductase in rice.	Mol. Cells	11(3)	295-302	2001	_,_,_	HMGR II, Hmg2, HMGR2, HMGR 2, OsHMGR2,HMGR III, Hmg3, HMGR3, HMGR 3, OsHMGR3,HMGR I, Hmg1, HMGR1, HMGR 1, OsHMGR1
22099		Hamby,R.K. and Zimmer,E.A.	Ribosomal RNA sequences for inferring phylogeny within the grass family (Poaceae)	Plant Syst. Evol.	160	29-37	1988	_	
22100		Han,Y., Jiang,J., Liu,H., Ma,Q., Xu,W., Xu,Y., Xu,Z. and Chong,K.	Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa	Plant Sci.	169(3)	487-495	2005	_,RAA1,SLR1	OsSIN,OsRAA1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
22101	8883395	Hashimoto,J., Tanaka,H., Yamamoto,K. and Sasaki,T.	A cDNA clone encoding a C-type cyclin from rice	Plant Physiol.	112	862	1996	_	OsCycC_1, CycC_1
22104	16606701	He,G., Luo,X., Tian,F., Li,K., Zhu,Z., Su,W., Qian,X., Fu,Y., Wang,X., Sun,C. and Yang,J.	Haplotype variation in structure and expression of a gene cluster associated with a quantitative trait locus for improved yield in rice.	Genome Res.	16(5)	618-626	2006	_,_,_,_,_,_,_,_	LRK7,LRK8,LRK3,LRK6,LRK5, OsLRK5,LRK2,LRK4, OsLRK4,LRK1, OsLRK1
22105		Higo,H., Kishimoto,N., Saito,A. and Higo,K.	Molecular cloning and characterization of a cDNA encoding a small GTP-binding protein related to mammalian ADP-ribosylation factor from rice	Plant Sci.	100(1)	41-49	1994	_	ARF, ARF1, OsARFA1b, ARFA1b
22108	16760221	Hirose,F., Shinomura,T., Tanabata,T., Shimada,H. and Takano,M.	Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering.	Plant Cell Physiol.	47(7)	915-925	2006	_,_,AOS1,_	OsCRY1b, OsCRY2, CRY1b, CRY1 ,OsCRY2, CRY2,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsCRY1a, OsCRY1, CRY1a, CRY2 
22112	16722339	Hou,F.Y., Huang,J., Lu,J.F., Wang,Z.F. and Zhang,H.S.	Isolation and expression analysis of plastidic glucose-6-phosphate dehydrogenase gene from rice (Oryza sativa L.).	Acta Genetica Sinica	33(5)	441-448	2006	_	OsG6PDH3, OsG6PDH2
22114	15968510	Hu,H., Xiong,L. and Yang,Y.	Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection.	Planta.	222(1)	107-117	2005	_,_	OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2
22115	16924117	Hu,H., Dai,M., Yao,J., Xiao,B., Li,X., Zhang,Q. and Xiong,L.	Overexpressing a NAM, ATAF, and CUC (NAC) transcription factor enhances drought resistance and salt tolerance in rice	Proc. Natl. Acad. Sci. U.S.A.	103(35)	12987-12992	2006	_,ERD1	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
22116	16800383	Hu,T.Z., Wang,W.P., Cao,K.M., Xia,M. and Wang,X.P.	Isolation and characterization of OsGSTL1 promoter from rice.	Acta Genetica Sinica	33(6)	525-531	2006	GSTL1	OsGSTL1
22117		Hu,X., Song,F. and Zheng,Z.	Molecular characterization and expression analysis of a rice protein phosphatase 2C gene, OsBIPP2C1, and overexpression in transgenic tobacco conferred enhanced disease resistance and abiotic tolerance	Physiol. Plantarum	127(2)	225-236	2006	OSKAPP,BIPP2C1	OsKAPP, OsPP94,OsBIPP2C1, OsPP45, PP45
22118		Huang,J., Cao,Y., Zhang,H. and Yang,J.	Cloning and sequence analysis of a novel C2H2 zinc finger cDNA from rice	J. Nanjing Agri. Univ.	25(2)	114-116	2002		
22130	12644668	Jasinski,M., Ducos,E., Martinoia,E. and Boutry,M.	The ATP-binding cassette transporters: structure, function, and gene family comparison between rice and Arabidopsis.	Plant Physiol.	131(3)	1169-1177	2003	MRP2,MRP3,MRP5,MRP7,MRP10,MRP11,MRP12,PDR3,PDR7,PDR12,PDR15,PDR5,PDR13,PDR4,_,PDR14.P,MRP8,MRP4,MRP6,MDR4,MDR5,MDR9,MDR17,MDR8,MDR11,MDR1,MDR3,MDR15,MDR16,MDR14,PDR1,PDR6,PDR2,MRP9,MDR12,MDR10,PDR11,PDR10,PDR8,PDR9,MRP1,MDR6,MDR13,MDR7	OsABCC2, OsMRP2,OsABCC3, OsMRP3,OsABCC5, OsMRP5,OsABCC7, OsMRP7,OsABCC10, OsMRP10,OsABCC11, OsMRP11,OsABCC12, OsMRP12,OsABCG48, OsPDR3,OsABCG39, OsPDR7,OsABCG42, OsPDR12, OsABCG42_1, OsABCG42_2,OsABCG38, OsPDR15,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,OsPDR13,OsPDR4,PMP2,OsPDR14, PDR14, pdr14,OsABCC8, OsMRP8a, OsMRP8a, OsMRP8,OsABCC4, ABCC4, OsMRP4,OsABCC6, OsMRP6,OsABCB1, ABCB1, OsPGP1, OsMDR4,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsABCG45, OsPDR1, FCO1,OsPDR6, OsABCG31, OsABCG31_1,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 ,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsABCG35, OsPDR11, OsPDR2,OsABCG34, OsPDR10, OsPDR1,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsPDR9, ospdr9, OsPDR3, PDR3,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11
22131	16359716	Jiang,J.F., Han,Y., Xing,L.J., Xu,Y.Y., Xu,Z.H. and Chong,K.	Cloning and expression of a novel cDNA encoding a mannose-specific jacalin-related lectin from Oryza sativa.	Toxicon	47(1)	133-139	2006	_	OsJAC1, JAC1
22133	16829581	Kaku,H., Nishizawa,Y., Ishii-Minami,N., Akimoto-Tomiyama,C., Dohmae,N., Takio,K., Minami,E. and Shibuya,N.	Plant cells recognize chitin fragments for defense signaling through a plasma membrane receptor.	Proc. Natl. Acad. Sci. U.S.A.	103(29)	11086-11091	2006	CEBiP	CEBIP, Os-LYP1, LYP1, OsCEBiP
22134		Kaminaka,H., Morita,S., Masumura,T. and Tanaka,K.	The electronic plant gene register.	Plant Physiol.	118(1)	329-331	1998	_	
22135	10557255	Kaminaka,H., Yokoi,H., Nosaka,Y., Sakamoto,A., Morita,S., Masumura,T. and Tanaka,K.	Cloning and characterization of manganese-superoxide dismutase gene from rice (accession No. AB026725)	Plant Physiol.	121(3)	1054-1055	1999	SODA1	SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1
22140		Kanjo,N. and Inokuchi,H.	Nucleotide sequence of a cDNA clone encoding thymidylate synthase from rice (Accession No. AB023402)	Plant Physiol.	120	634	1999	_	thyA
22142	16861806	Kanno,Y., Otomo,K., Kenmoku,H., Mitsuhashi,W., Yamane,H., Oikawa,H., Toshima,H., Matsuoka,M., Sassa,T. and Toyomasu,T.	Characterization of a rice gene family encoding type-a diterpene cyclases.	Biosci. Biotechnol. Biochem.	70(7)	1702-1710	2006	KS7,CPS4,CPS2,KS1,CPS1,KS3,KS5,KSL10,KS6,KSL11,KS4,KS8	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8,OsKSL10, KS10, OsKS10, OsTPS33,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9,OsKSL11, KS11, OsKS11,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32
22143	15891897	Kasai,K., Kanno,T., Akita,M., Ikejiri-Kanno,Y., Wakasa,K. and Tozawa,Y.	Identification of three shikimate kinase genes in rice: characterization of their differential expression during panicle development and of the enzymatic activities of the encoded proteins.	Planta.	222(3)	438-447	2005	_,_,_	OsSK1,OsSK3, SK3,OsSK2, SK2
22145		Kavakli,H.I., Wu,Y. and Okita,T.W.	DNA Sequence of a Near-Full Length cDNA Encoding the ADPglucose Pyrophosphorylase Large Subunit from Rice (Oryza sativa L) Endosperm (Accession No: U66041)(PGR96-116)	Plant Physiol.	112	1399	1996	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
22146	16461585	Kawakatsu,T., Itoh,J., Miyoshi,K., Kurata,N., Alvarez,N., Veit,B. and Nagato,Y.	PLASTOCHRON2 regulates leaf initiation and maturation in rice.	Plant Cell	18(3)	612-625	2006	PLA1,PLA2	pla1, OsPLA1, plt1, CYP78A11,pla2, pla2(pla2-1, pla2-2), plt2, LHD2
22147	16412485	Kim,B.G., Lee,Y., Hur,H.G., Lim,Y. and Ahn,J.H.	Flavonoid 3'-O-methyltransferase from rice: cDNA cloning, characterization and functional expression.	Phytochemistry	67(4)	387-394	2006	ROMT9	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT
22160		Lee,J.R., Lee,K.O., Park,J.H., Yoo,J.Y., Kang,J.S., Jeon,H.S., Kim,S.Y., Lee,Y.M., Kim,S.T., Lim,C.O., Bahk,J.D., Cho,M.J. and Lee,S.Y.	Molecular and functional characterization of a PEX14 cDNA from rice	Plant Sci.	166(1)	123-130	2004	PEX14	OsPex14, OsPex14p, OsPEX14
22164	16527928	Li,C., Zhou,A. and Sang,T.	Rice domestication by reducing shattering.	Science	311(5769)	1936-1939	2006	SH4	sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
22165	16842786	Li,D.F., Li,J., Ma,L., Zhang,L. and Lu,Y.T.	Calmodulin isoform-specific activation of a rice calmodulin-binding kinase conferred by only three amino-acids of OsCaM61.	FEBS Lett.	580(18)	4325-4331	2006	CRK1,CALA,CAM61	OsCRK1, OsCBK, CBK,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,CaM61, OsCaM61, OsCML1, OsCML1d
22166	16377757	Li,J., Zhu,S., Song,X., Shen,Y., Chen,H., Yu,J., Yi,K., Liu,Y., Karplus,V.J., Wu,P. and Deng,X.W.	A Rice Glutamate Receptor-Like Gene Is Critical for the Division and Survival of Individual Cells in the Root Apical Meristem	Plant Cell	18(2)	340-349	2006	GLR3.1	OsGLR3.2, GLR3.2, OsGLR3.1
22167	16753820	Li,K., Yang,J., Liu,J., Du,X., Wei,C., Su,W., He,G., Zhang,Q., Hong,F. and Qian,X.	Cloning, characterization and tissue-specific expression of a cDNA encoding a novel EMBRYONIC FLOWER 2 gene (OsEMF2) in Oryza sativa.	DNA Seq.	17(1)	74-78	2006	EMF2A	OsEMF2a, OsEMF2, EMF2
22168		Li,T., Takano,T., Matsumura,H. and Takeda,G.	Molecular cloning of rice lactate dehydrogenase cDNA	Japan. J. Breed.	43	129-133	1993	LDH	LDH
22173		Liu,J.M., Chen,S.N., Yan,B., Huang,X.Q. and Yang,M.Z.	Cloning and Sequencing of a Part-Length cDNA Coding for Glycerol-3-Phosphate Acyltransferase from Rice	Yunnan Zhiwu Yanjiu	20(3)	339-342	1998	_	GPAT, OsGPAT
22178		Lorbiecke,R. and Sauter,M.	Comparative analysis of PSK peptide growth factor precursor homologs	Plant Sci.	163(2)	321-332	2002	PSK2,PSK5,PSK4,PSK,PSK3	OsPSK2,OsPSK5,OsPSK4, Psk4,OsPSK, PSK-alpha, PSK-beta,OsPSK3, GREP2, OMT9
22179	16649109	Lou,Y., Ma,H., Lin,W.H., Chu,Z.Q., Mueller-Roeber,B., Xu,Z.H. and Xue,H.W.	The Highly Charged Region of Plant beta-type Phosphatidylinositol 4-kinase is Involved in Membrane Targeting and Phospholipid Binding.	Plant Mol. Biol.	60(5)	729-746	2006	_	OsPI4K1, OsPI4K2
22180	16820865	Lu,Q., Xu,Z.K. and Song,R.T.	OsFY, a homolog of AtFY, encodes a protein that can interact with OsFCA-gamma in rice (Oryza sativa L.).	Acta Biochim. Biophys. Sin. (Shanghai)	38(7)	492-499	2006	FCA,_	OsFCA, OsFCA-1, OsFCA-2, OsFCA-3, OsFCA-4, OsFCA-gamma,OsWD40-32, OsFY, FY
22181		Ma,H., Zhu,X.P., Lou,X.M., Chen,L. and Zhang,J.	Construction and transient expression of a chimeric gene consisting of 5' upstream region of Wx gene and coding region of GUS gene in Rice developing seeds	Yi Chuan Xue Bao	22	353-360	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
22182	16572174	Ma,J.F., Tamai,K., Yamaji,N., Mitani,N., Konishi,S., Katsuhara,M., Ishiguro,M., Murata,Y. and Yano,M.	A silicon transporter in rice.	Nature	440(7084)	688-691	2006	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
22185	16450172	Mahalakshmi,S., Christopher,G.S.B., Reddy,T.P., Rao,K.V. and Reddy,V.D.	Isolation of a cDNA clone (PcSrp) encoding serine-rich-protein from Porteresia coarctata T. and its expression in yeast and finger millet (Eleusine coracana L.) affording salt tolerance.	Planta.	224(2)	347-359	2006	_	PcSrp, Srp
22187	2518836	Masumura,T., Kidzu,K., Sugiyama,Y., Mitsukawa,N., Hibino,T., Tanaka,K. and Fujii,S.	Nucleotide sequence of a cDNA encoding a major rice glutelin	Plant Mol. Biol.	12(6)	723-725	1989	GLUB4	GluB4, GluB-5
22189	16100779	International Rice Genome Sequencing Project	The map-based sequence of the rice genome.	Nature	436(7052)	793-800	2005		
22192		Medina,J. and Quatrano,R.S.	Characterization of a rice cDNA (Accession No. L76377) encoding an Osmotin-like protein (PGR96-058)	Plant Physiol.	111	1354	1996	_	OsLP, PR-5, 14b
22195	16753816	Meng,X.B., Zhao,W.S., Lin,R.M., Wang,M. and Peng,Y.L.	Molecular cloning and characterization of a rice blast-inducible RING-H2 type zinc finger gene.	DNA Seq.	17(1)	41-48	2006	_	OsRING-1
22196		Midoh,N.	The probenazole-inducible rice PBZ1 promoter is regulated by salicylic acid in transgenic tobacco	Sci. Reports Meiji Seika Kaisha	36	42-54	1997	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
22198	16623884	Mizuno,H., Wu,J., Kanamori,H., Fujisawa,M., Namiki,N., Saji,S., Katagiri,S., Katayose,Y., Sasaki,T. and Matsumoto,T.	Sequencing and characterization of telomere and subtelomere regions on rice chromosomes 1S, 2S, 2L, 6L, 7S, 7L and 8S.	Plant J.	46(2)	206-217	2006		
22201		Morita,S., Kaminaka,H., Yokoi,H., Masumura,T. and Tanaka,K.	Cloning and characterization of cytosolic ascorbate peroxidase cDNA from rice (PGR97-012)	Plant Physiol.	113	306	1997	APX1,APX2	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
22203	16256063	Morrone,D., Jin,Y., Xu,M., Choi,S.Y., Coates,R.M. and Peters,R.J.	An unexpected diterpene cyclase from rice: functional identification of a stemodene synthase.	Arch. Biochem. Biophys.	448(1-2)	133-140	2006	KSL11	OsKSL11, KS11, OsKS11
22204	16939657	Mukherjee,K., Choudhury,A.R., Gupta,B., Gupta,S. and Sengupta,D.N.	An ABRE-binding factor, OSBZ8, is highly expressed in salt tolerant cultivars than in salt sensitive cultivars of indica rice.	BMC Plant Biol	6	18	2006	OSBZ8	OsBZ8, OsbZIP05
22206	16394586	Nagano,H., Onishi,K., Ogasawara,M., Horiuchi,Y. and Sano,Y.	Genealogy of the &quot;Green Revolution&quot; gene in rice.	Genes Genet. Syst.	80(5)	351-356	2005	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
22207	16284419	Nagasaki,H., Matsuoka,M. and Sato,Y.	Members of TALE and WUS subfamilies of homeodomain proteins with potentially important functions in development form dimers within each subfamily in rice.	Genes Genet. Syst.	80(4)	261-267	2005	NAL3,OSH15,WOX1,_,NAL2	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1,BEL1, OsBEL, BEL,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS
22209	16249326	Nakamura,A., Fukuda,A., Sakai,S. and Tanaka,Y.	Molecular cloning, functional expression and subcellular localization of two putative vacuolar voltage-gated chloride channels in rice (Oryza sativa L.).	Plant Cell Physiol.	47(1)	32-42	2006	CLC-1,CLC-2	OsCLC-1,OsCLC-2
22211		Nakayashiki,T. and Inokuchi,H.	Nuceotide sequence of a cDNA clone encoding glutamyl-tRNA reductase from rice (accession No. AB011416) (PGR 98-080)	Plant Physiol.	117	332	1998	_	HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1
22215	17028208	Nanjo,Y., Oka,H., Ikarashi,N., Kaneko,K., Kitajima,A., Mitsui,T., Munoz,F.J., Rodriguez-Lopez,M., Baroja-Fernandez,E. and Pozueta-Romero,J.	Rice Plastidial N-Glycosylated Nucleotide Pyrophosphatase/Phosphodiesterase Is Transported from the ER-Golgi to the Chloroplast through the Secretory Pathway.	Plant Cell	18(10)	2582-2592	2006	NPP1	OsNPP1, OsPAP27b, PAP27B
22216		Nishizawa,Y. and Hibi,T.	Rice chitinase gene: cDNA cloning and stress-induced expression.	Plant Sci.	76	211-218	1991	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1
22220	16501255	Ohara,K., Yamamoto,K., Hamamoto,M., Sasaki,K. and Yazaki,K.	Functional Characterization of OsPPT1, Which Encodes p-Hydroxybenzoate Polyprenyltransferase Involved in Ubiquinone Biosynthesis in Oryza sativa.	Plant Cell Physiol.	47(5)	581-590	2006	_,_,_,_	OsPPT1a,OsPPT1b,OsPPT1c,OsHGGT, HGGT, OsHST
22223	16381971	Ohyanagi,H., Tanaka,T., Sakai,H., Shigemoto,Y., Yamaguchi,K., Habara,T., Fujii,Y., Antonio,B.A., Nagamura,Y., Imanishi,T., Ikeo,K., Itoh,T., Gojobori,T. and Sasaki,T.	The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.	Nucleic Acids Res.	34(Database issue)	D741-D744	2006		
22225	12121993	Ominato,K., Akita,H., Suzuki,A., Kijima,F., Yoshino,T., Yoshino,M., Chiba,Y., Onouchi,H. and Naito,S.	Identification of a short highly conserved amino acid sequence as the functional region required for posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis.	J. Biol. Chem.	277(39)	36380-36386	2002		
22230	10759541	Park,S. and Thornburg,R.W.	Characterization of a cDNA encoding UMP synthase from rice (Accession Nos. AF210322, AF210323, AF210324, and AF210325) (PGR00-043)	Plant Physiol.	122(4)	1458	2000	_,_	UMPS2,UMPS1
22232	16891402	Perez-Ruiz,J.M., Spinola,M.C., Kirchsteiger,K., Moreno,J., Sahrawy,M. and Cejudo,F.J.	Rice NTRC Is a High-Efficiency Redox System for Chloroplast Protection against Oxidative Damage.	Plant Cell	18(9)	2356-2368	2006	CDSP32,NTRC,_,_,_	CDSP32,OsNTRC, NtrC, OsGRL15,CDSP32,Trx x,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
22233	16963705	Piegu,B., Guyot,R., Picault,N., Roulin,A., Saniyal,A., Kim,H., Collura,K., Brar,D.S., Jackson,S., Wing,R.A. and Panaud,O.	Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.	Genome Res.	16(10)	1262-1269	2006	RIRE1,KANGOUROU,DINGO,WALLABI	RIRE1, Osr11, Rire1,Kangourou,Dingo,Wallabi
22235		Qi,Y.H., Yamauchi,Y., Ling,J.Q., Kawano,N., Li,D. and Tanaka,K.	The submergence-induced gene OsCTP in rice (Oryza sativa L.) is similar to Escherichia coli cation transport protein ChaC	Plant Sci.	168(1)	15-22	2005	_	OsARP, OsCTP
22236	16980130	Qiu,S.-P., Huang,J., Pan,L.-J., Wang,M.-M. and Zhang,H.-S.	Salt Induces Expression of RH3.2A, Encoding an H3.2-type Histone H3 Protein in Rice (Oryza sativa L.).	Acta Genetica Sinica	33(9)	833-840	2006	_	RH3.2A
22237	16387888	Qu,S., Liu,G., Zhou,B., Bellizzi,M., Zeng,L., Dai,L., Han,B. and Wang,G.L.	The broad-spectrum blast resistance gene pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.	Genetics	172(3)	1901-1914	2006	PI9,PI3	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
22242		Reddy,P.M.S. and Padayatty,J.D.	5S-rRNA genes in rice embryos	Plant Mol. Biol.	9	443-451	1987	_,_,R5S1	,,R5s1*, r5s, R5s1
22243		Reddy,P.M.S. and Padayatty,J.D.	Effects of 5' flanking sequences and changes in the 5' internal control region on the transcription of rice Gly-tRNA-GCC gene	Plant Mol. Biol.	11(5)	575-583	1988	_	trnG(GCC), trnG
22245	16805736	Rook,F., Corke,F., Baier,M., Holman,R., May,A.G. and Bevan,M.W.	Impaired sucrose induction1 encodes a conserved plant-specific protein that couples carbohydrate availability to gene expression and plant growth	Plant J.	46	1045-1058	2006	_	OsISI1
22249		Sakaguchi,N., Furukawa,T., Shimada,H., Hashimoto,J., Sakaguchi,K. and Umeda,M.	Isolation and characterization of a rice cDNA encoding B1-type cyclin-dependent kinase	Plant Biotechnol.	23(2)	211-214	2006	CDKB;1	CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1
22250		Sakamoto,M., Satozawa,T., Kishimoto,N., Higo,K., Shimada,H. and Fujimura,T.	Structure and RFLP mapping of a rice sucrose phosphate synthase (SPS) gene that is specifically expressed in the source organ	Plant Sci.	112(2)	207-217	1995	SPS1	sps1, OsSPS1, SPS
22251	16730655	Saotome,A., Kimura,S., Mori,Y., Uchiyama,Y., Morohashi,K. and Sakaguchi,K.	Characterization of four RecQ homologues from rice (Oryza sativa L. cv. Nipponbare).	Biochem. Biophys. Res. Commun.	345(4)	1283-1291	2006	-,-	OsRecQ1,OsRecQ2
22255	16496151	Sato,K., Mase,K., Nakano,Y., Nishikubo,N., Sugita,R., Tsuboi,Y., Kajita,S., Zhou,J., Kitano,H. and Katayama,Y.	3-Deoxy-D-arabino-heptulosonate 7-phosphate synthase is regulated for the accumulation of polysaccharide-linked hydroxycinnamoyl esters in rice (Oryza sativa L.) internode cell walls.	Plant Cell Rep.	25(7)	676-688	2006	_,_	OsDAHPS1, DAHPS1,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2
22258		Senthilkumar,P., Parani,M., Lakshmi,M., Jithesh,M.N. and Parida,A.	Histone H3 gene from Porteresia coarctata (Accession No. AF109910) (PGR99-023)	Plant Physiol.	119(2)	806	1999	_	
22261	16228246	Sharma,T.R., Madhav,M.S., Singh,B.K., Shanker,P., Jana,T.K., Dalal,V., Pandit,A., Singh,A., Gaikwad,K., Upreti,H.C. and Singh,N.K.	High-resolution mapping, cloning and molecular characterization of the Pi-kh gene of rice, which confers resistance to Magnaporthe grisea.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	274(6)	569-578	2005	PIK,PIKH	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
22266	16624618	Shrestha,R., Kim,S.C., Dyer,J.M., Dixon,R.A. and Chapman,K.D.	Plant fatty acid (ethanol) amide hydrolases.	Biochim. Biophys. Acta	1761(3)	324-334	2006	_	FAAH
22267		Sikka,V.K., Choi,S.-B., Kavakli,I.H., Sakulsingharoj,C., Gupta,S., Ito,H. and Okita,T.W.	Subcellular compartmentation and allosteric regulation of the rice endosperm ADPglucose pyrophosphorylase	Plant Sci.	161(3)	461-468	2001	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
22268	16755461	Song,D., Chen,J., Song,F. and Zheng,Z.	A novel rice MAPK gene, OsBIMK2, is involved in disease-resistance responses.	Plant Biol.	8(5)	587-596	2006	MSRMK2,_,BWMK1,MAPK4,_	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK20-4, OsWJUMK, WJUMK, OsWJUMK1, WJUMK1, MAPK8, OsMPK8, MPK8,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, 
22269	16786279	Su,W., Lin,C., Wu,J., Li,K., He,G., Qian,X., Wei,C. and Yang,J.	Molecular Cloning and Expression of a cDNA Encoding Lon Protease from rice (Oryza sativa).	Biotechnol. Lett.	28(12)	923-927	2006	_	OsLon1, LON1, OsLonP4, LONP4, LON2 
22270	16640604	Su,Y., Kwon,C.S., Bezhani,S., Huvermann,B., Chen,C., Peragine,A., Kennedy,J.F. and Wagner,D.	The N-terminal ATPase AT-hook-containing region of the Arabidopsis chromatin-remodeling protein SPLAYED is sufficient for biological activity.	Plant J.	46(4)	685-699	2006	_,_,_	OsSYD, CHR720,OsBRM,OsCHR719
22274	16461382	Sun,X., Cao,Y. and Wang,S.	Point Mutations with Positive Selection Were a Major Force during the Evolution of a Receptor-Kinase Resistance Gene Family of Rice	Plant Physiol.	140(3)	998-1008	2006	XA3,MRKc,MRKd,MRKa,TRKE,TRKF,TRKG,TRKH,TRKI,TRKJ	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,MRKc, RKc, TRKc,MRKd, RKd, TRKd,MRKa, RKa, TRKa,TRKe, Rke, NRKe, 9RKe ,TRKf,TRKg,TRKh,TRKi,TRKj
22275		Suzuka,I., Koga-Ban,Y., Sasaki,T., Minobe,Y. and Hashimoto,J.	Identification of cDNA clones for rice homologs of the human immunodeficiency virus-1 Tat binding protein and subunit 4 of human 26S protease (proteasome)	Plant Sci.	103(1)	33-40	1994	_,_	TBPOs-1, OsRpt5a, Rpt5a,TBPOs-2, OsRpt2a, Rpt2a
22276	16399804	Sweeney,M.T., Thomson,M.J., Pfeil,B.E. and McCouch,S.	Caught red-handed: rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.	Plant Cell	18	283-294	2006	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
22279		Takahashi,S., Hirose,T., Imaizumi,N. and Ohsugi,R.	Cloning of a cDNA encoding cytosolic fructose-1,6-bisphosphatase from rice (Oryza sativa L.) (Accession No. AB007193) (PGR 98-084)	Plant Physiol.	117	332-333	1998		
22280		Takahashi,S., Hirose,T., Imaizumi,N. and Ohsugi,R.	Cloning of a cDNA encoding plastidic fructose-1,6-bisphosphatase from rice (Oryza sativa L.) (Accession No. AB007194) (PGR 98-083)	Plant Physiol.	117	332	1998	_	OsCFR
22288		To,K.Y., Suen,D.F., Cheng,M.C., Chen,L.F.O. and Chen,S.C.G.	Cloning and sequencing of a rice cDNA (Accession No. U74321) encoding rubisco activase (PGR97-011)	Plant Physiol.	113	306	1997	_	OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA
22293	16193045	Ueguchi-Tanaka,M., Ashikari,M., Nakajima,M., Itoh,H., Katoh,E., Kobayashi,M., Chow,T., Hsing,Y.C., Kitano,H., Yamaguchi,I. and Matsuoka,M.	GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin.	Nature	437(7059)	693-698	2005	GID1	gid1, OsGID1, Thl, Os GID1
22294		Ueno,M., Kihara,J., Honda,Y., Isota,J. and Arase,S.	DNA fragmentation in Sekiguchi lesion mutants of rice infected with Magnaporthe grisea	J. Gen. Plant Pathol.	70(6)	321-328	2004	_,SL,TYDC	MAO,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3
22296	10577163	Vigneswaran,A. and Wurtzel,E.T.	A Rice cDNA Encoding Phytoene Desaturase (Accession No. AF049356) (PGR99-131)	Plant Physiol.	121(1)	312	1999	PDA	PDS1, PDS, OsPDS, Pds
22297	16220344	Wang,F., Wang,H., Liu,B. and Wang,J.	Cloning and characterization of a novel splicing isoform of the iron-superoxide dismutase gene in rice (Oryza sativa L.).	Plant Cell Rep.	24(12)	734-742	2006	SODB	SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2
22299	16432735	Wang,H.W., Zhang,J.S., Gai,J.Y. and Chen,S.Y.	Cloning and comparative analysis of the gene encoding diacylglycerol acyltransferase from wild type and cultivated soybean.	Theor. Appl. Genet.	112(6)	1086-1097	2006	_	OsDGAT
22301		Wang,Q., Chen,J., Wang,X., Sun,J. and Sha,W.	Molecular cloning and expression analysis of the rice triose phosphate/phosphate translocator gene	Plant Sci.	162(5)	785-790	2002	TPT1	OsTPT1, TPT, tpt
22303		Wang,X.B., Xia,M., Chen,Q., Wu,Z. and Wu,P.	Identification of a new small GTP-binding protein gene OsRab5a, genomic organization, and expression pattern analysis during nitrate supply and early nutrient starvation in rice (Oryza sativa L.) root	Plant Sci.	163(2)	273-280	2002	GLUP4	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a
22304		Wang,X.J., Jiang,F.D., Gang,L.X. and Zhen,Z.	Isolation and characterization of rice EPSP synthase and its chromosome location	Sci. Sin., Ser. B, Chem. Biol. Agric. Med. Earth Sci.	44		2001		
22305	16489123	Wang,Z., Zou,Y., Li,X., Zhang,Q., Chen,L., Wu,H., Su,D., Chen,Y., Guo,J., Luo,D., Long,Y., Zhong,Y. and Liu,Y.G.	Cytoplasmic Male Sterility of Rice with Boro II Cytoplasm Is Caused by a Cytotoxic Peptide and Is Restored by Two Related PPR Motif Genes via Distinct Modes of mRNA Silencing.	Plant Cell	18(3)	676-687	2006	ATP6,AATP6,RF1B,RF1,_	atp6, OsPOX1, prx3, POX1,A-atp6,RF1b, Rf-1B, PPR7,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,atp6, N-atp6, B-ATP6, B-atp6, atp6-1
22309		Watanabe,K., Higuchi,T., Sakai,T. and Yamaya,T.	The electronic Plant Gene Register.	Plant Physiol.	111(1)	347-348	1996	ASN	OsASN2, OsAS, OsAS2, AS2
22311	16636480	Wei,J.Y., Li,A.M., Li,Y., Wang,J., Liu,X.B., Liu,L.S. and Xu,Z.F.	Cloning and Characterization of an RNase-Related Protein Gene Preferentially Expressed in Rice Stems.	Biosci. Biotechnol. Biochem.	70(4)	1041-1045	2006	RNS4	OsRNS4, OsRRP, RNaseDIS
22312	10594126	Womack,J.S., Randall,J. and Kemp,J.D.	Oryzacystatin-I has a signal peptide (Accession No. AF164378) (PGR99-175)	Plant Physiol.	121(4)	1383	1999		
22313	9841365	Wu,J., Cramer,C. and Hatzios,K.K.	Isolation of a full-length cDNA encoding the second glutathione S-transferase from rice (Accession No. AF062403) (PGR98-136)	Plant Physiol.	118(1)	329	1998	GSTF2	OsGSTF2, RGSTII
22314		Wu,J., Cramer,C. and Hatzios,K.K.	Nucleotide sequence of a cDNA encoding glutathione S-transferase from rice (Oryza sativa) (accession no. AJ002380). (PGR98-120)	Plant Physiol.	117(3)	1126-1126	1998		
22317		Xiang,T., Wang,L. and Pang,J.	Cloning and characterization of a full-length cab gene encoding the light-harvesting chlorophyll a/b-binding protein in rice(Oryza sativa L.)	Zuo Wu Xue Bao	31(9)	1227-1232	2005	DYE1	cab, cab-n8, Lhca4, OsLhca4
22320		Xu,B., Xing,Y., Wang,Z., Zhang,J., Zhu,S. and Hong,M.	Cloning, characterization of cDNA encoding rice aldehyde dehydrogenase, and analysis of its expression in male-sterile lines	Chih Wu Sheng Li Hsueh Pao	26(3)	206-212	2000		
22321	16900200	Xu,K., Xu,X., Fukao,T., Canlas,P., Maghirang-Rodriguez,R., Heuer,S., Ismail,A.M., Bailey-Serres,J., Ronald,P.C. and Mackill,D.J.	Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice	Nature	442(7103)	705-708	2006	SUB1B,SUB1C,ADH1,SUB1A	Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,Adh1, Adh1/2, adh1/adh2, OsADH1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
22327	16326928	Yamaguchi,T., Lee,D.Y., Miyao,A., Hirochika,H., An,G. and Hirano,H.Y.	Functional diversification of the two C-class MADS box genes OSMADS3 and OSMADS58 in Oryza sativa.	Plant Cell	18	15-28	2006	RAG,MADS58	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsMADS58
22328	16717423	Yamasaki,T., Deguchi,M., Fujimoto,T., Masumura,T., Uno,T., Kanamaru,K. and Yamagata,H.	Rice Bifunctional alpha-Amylase/Subtilisin Inhibitor: Cloning and Characterization of the Recombinant Inhibitor Expressed in Escherichia coli	Biosci. Biotechnol. Biochem.	70(5)	1200-1209	2006	_	RASI, OsEnS-69
22333		Yang,Q.Z., Yang,P.W., Wang,Q., Liu,J.M., Yan,B., Li,J.R. and Huang,X.Q.	Cloning and Sequencing of Disease Resistance Gene Analogues in Rice (Oryza sativa L.)	Zhongguo Shuidao Kexue	15(4)	241-247	2001	_,_,_,_,_,_,WAK85,WAK105,SIK2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,DRUS2,_	YR14, YR18, YR26,YR5,YR12,YR19,YR36,YR35,OsWAK85, YK10,OsWAK105, YK3,OsSIK2, YK14,YK18,YK19,YK28,YK13,YK15,YK20,YK25,YK26,YK30,Os8Tak2, YK21, OsRLCK12, RLCK12,YK12,YK11, OsCrRLK1L11,YK35,YR2, YR6, YR9, YR10, YR21, YR23,YR48,YR1, YR7, YR11, YR20, YR22, YR24,YK1, OsCrRLK1L5,YR16, YR29, rNBS42
22335		Yau,C.P. and Yip,W.K.	Nucleotide sequence of a full-length cDNA encoding an ethylene receptor from rice (Accession No. AF013979) (PGR97-134)	Plant Physiol.	115	315	1997	ERS1	OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS
22337	16133310	Yoshida,K. and Miyashita,N.T.	Nucleotide polymorphism in the Adh2 region of the wild rice Oryza rufipogon.	Theor. Appl. Genet.	111(6)	1215-1228	2005	ADH2,ADH1	Adh2*, Adh2,Adh1, Adh1/2, adh1/adh2, OsADH1
22343	16443696	Zhang,K., Qian,Q., Huang,Z., Wang,Y., Li,M., Hong,L., Zeng,D., Gu,M., Chu,C. and Cheng,Z.	GOLD HULL AND INTERNODE2 Encodes a Primarily Multifunctional Cinnamyl-Alcohol Dehydrogenase in Rice	Plant Physiol.	140(3)	972-983	2006	GH2	gh2, CAD2, CAD, OsCAD2, GH2 
22344	16525890	Zhang,L., Tao,J., Wang,S., Chong,K. and Wang,T.	The Rice OsRad21-4, an Orthologue of Yeast Rec8 Protein, is Required for Efficient Meiosis.	Plant Mol. Biol.	60(4)	533-554	2006	RAD21,RAD21-2,RAD21-3,RAD21-4	OsRad21, OsRAD21-1,OsRad21-2,OsRad21-3,OsRad21-4, REC8, OsREC8, OsRAD21-4
22345		Zhang,M., Xu,S. and Liang,C.	Identification of a rice cDNA encoding the acyl-CoA-binding protein (ACBP)	Chih Wu Sheng Li Hsueh Pao	25	327-331	1999	ACBP	ACBP
22346		Zhang,S., Hu,W., Wang,L., Lin,C., Cong,B., Sun,C. and Luo,D.	TFL1/CEN-like genes control intercalary meristem activity and phase transition in rice	Plant Sci.	168(6)	1393-1408	2005	RCN1	Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1
22347	16753814	Zhou,G.A., Jiang,Y., Yang,Q., Wang,J.F., Huang,J. and Zhang,H.S.	Isolation and characterization of a new Na+/H+ antiporter gene OsNHA1 from rice (Oryza sativa L.).	DNA Seq.	17(1)	24-30	2006	SOS1	OsSOS1, OsNHA1
22350	16399803	Zhu,Y., Nomura,T., Xu,Y., Zhang,Y., Peng,Y., Mao,B., Hanada,A., Zhou,H., Wang,R., Li,P., Zhu,X., Mander,L.N., Kamiya,Y., Yamaguchi,S. and He,Z.	ELONGATED UPPERMOST INTERNODE Encodes a Cytochrome P450 Monooxygenase That Epoxidizes Gibberellins in a Novel Deactivation Reaction in Rice.	Plant Cell	18(2)	442-456	2006	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
22351		Zhu,Z.P.	A cDNA sequence of 10 kDa prolamin from long grain rice (Oryza sativa L. subsp.indica) (EMBLX84649) (PGR95-033)	Plant Physiol.	108(1)	1748-1748	1995	_	Prol-01, CysR10, crP10, pro10.1
22363	17090310	DeMarco,R., Venancio,T.M. and Verjovski-Almeida,S.	SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamilyy	BMC Evol. Biol.	6	89	2006		
22364	17289016	Jiang,S.Y., Cai,M. and Ramachandran,S.	ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations 	Dev. Biol.	304(2)	579-592	2007	_	OSMYOXIB, OsMyoXIB
22365	17076258	Hu,X., Song,F. and Zheng,Z.	Molecular cloning and expression analysis of rice OsTVLP1, encoding a protein with similarity to TGF-beta receptor interacting proteins and vacuolar assembly Vam6p/Vps39p proteins	DNA Seq.	17(2)	152-158	2006	_	OsTVLP1
22366	17312944	Gupta,S., Ciungu,A., Jameson,N. and Lal,S.K.	Alternative splicing expression of U1 snRNP 70K gene is evolutionary conserved between different plant species	DNA Seq.	17(4)	254-261	2006	_	U1-70K
22368		Mertens,J.A. and Skory,C.D.	Isolation and characterization of a second glucoamylase gene without a starch binding domain from Rhizopus oryzae	Enzyme Microb. Technol.	40(4)	874-880	2007		
22370	17210932	Rice Annotation Project	Curated Genome Annotation of Oryza sativa ssp. Japonica and Comparative Genome Analysis with Arabidopsis thaliana	Genome Res.	17(2)	175-183	2007		
22371	16000456	Rakeman,J.L., Bui,U., Lafe,K., Chen,Y.C., Honeycutt,R.J. and Cookson,B.T.	Multilocus DNA sequence comparisons rapidly identify pathogenic molds	J. Clin. Microbiol.	43(7)	3324-3333	2005		
22372	15781441	Kobayashi,T., Suzuki,M., Inoue,H., Itai,R.N., Takahashi,M., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements	J. Exp. Bot.	56	1305-1316	2005	NAS2,NAAT1,DMAS1,_,YSL15,NAS1,_,_,_,_,_,MTI4A,_,_,IRT2,FDH,_,SIP2	OsNAS2,OsNAAT1,OsDMAS1,OsRPI, RPI,OsYSL15, OsYs7,OsNAS1,OsDEP, DEP,OsIDI4, IDI4,OsIDI2, IDI2,OsSAM2, OsSAMS2, OS-SAMS2,OsMTN, MTN,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsMTK, OsMTK1, MTK, MTK1,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsIRT2, OsIRT1,OsFDH, FDH 1,OsAPT1, APRT, APT1,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1
22379	17216491	Lucyshyn,D., Busch,B.L., Abolmaali,S., Steiner,B., Chandler,E., Sanjarian,F., Mousavi,A., Nicholson,P., Buerstmayr,H. and Adam,G.	Cloning and characterization of the ribosomal protein L3 (RPL3) gene family from Triticum aestivum 	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	277(5)	507-517	2007	RPL3B,RPL3A	OsRPL3B, RPL3, OsRPL3,OsRPL3A, ARP1, ARP3
22380	17324757	Liou,G.-Y., Chen,S.-R., Wei,Y.-H., Lee,F.-L., Fu,H.-M., Yuan,G.-F. and Stalpers,J.A.	Polyphasic approach to the taxonomy of the Rhizopus stolonifer group 	Mycol. Res.	111(PT 2)	196-203	2007		
22381	17417637	Song,X.J., Huang,W., Shi,M., Zhu,M.Z. and Lin,H.X.	A QTL for rice grain width and weight encodes a novel RING-type E3 ubiquitin ligase	Nat Genet	39(5)	623-630	2007	GW2	OsGW2
22387	17141283	Xu,M., Wilderman,P.R., Morrone,D., Xu,J., Roy,A., Margis-Pinheiro,M., Upadhyaya,N.M., Coates,R.M. and Peters,R.J.	Functional characterization of the rice kaurene synthase-like gene family	Phytochemistry	68(3)	312-326	2007	KS7,KS4,KS1,KSL10,KSL11,KS3,KS2,KS8,KS5,KS6	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsKSL10, KS10, OsKS10, OsTPS33,OsKSL11, KS11, OsKS11,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25,OsKS2, KS2, KSL2, OsKSL2, OsTPS27,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9
22396	17144896	Lee,D.Y., Lee,J., Moon,S., Park,S.Y. and An,G.	The rice heterochronic gene SUPERNUMERARY BRACT regulates the transition from spikelet meristem to floral meristem 	Plant J.	49(1)	64-78	2007	SNB	AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB
22397	17217421	Qian,W., Yu,C., Qin,H., Liu,X., Zhang,A., Johansen,I.E. and Wang,D.	Molecular and functional analysis of phosphomannomutase (PMM) from higher plants and genetic evidence for the involvement of PMM in ascorbic acid biosynthesis in Arabidopsis and Nicotiana benthamiana	Plant J.	49(3)	399-413	2007	_	OsPMM
22398	17355435	Colmenero-Flores,J.M., Martinez,G., Gamba,G., Vazquez,N., Iglesias,D.J., Brumos,J. and Talon,M.	Identification and functional characterization of cation-chloride cotransporters in plants	Plant J.	50(2)	278-292	2007	_,_	Os CCC2, OsCCC2, OsLAT8,Os CCC1, OsCCC1, CCC1, OsLAT9 
22400	17142477	Martinez-Atienza,J., Jiang,X., Garciadeblas,B., Mendoza,I., Zhu,J.K., Pardo,J.M. and Quintero,F.J.	Conservation of the Salt Overly Sensitive Pathway in Rice 	Plant Physiol.	143(2)	1001-1012	2007	CBL4,CIPK24,SOS1	OsCBL4, SOS3, OsSOS3,OsCIPK24, SOS2, OsSOS2,OsSOS1, OsNHA1
22402	17219210	Rakshit,S., Rakshit,A., Matsumura,H., Takahashi,Y., Hasegawa,Y., Ito,A., Ishii,T., Miyashita,N.T. and Terauchi,R.	Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice	Theor. Appl. Genet.	114(4)	731-743	2007		
22403	17287810	Kurakawa,T., Ueda,N., Maekawa,M., Kobayashi,K., Kojima,M., Nagato,Y., Sakakibara,H., and Kyozuka,J.	Direct control of shoot meristem activity by a cytokinin-activating enzyme.	Nature	445(7128)	652-655	2007	LOG1	LOG1, LOG, Log, log
22503	15685364	Li,Y., Li,W. and Jin,Y.X.	Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa 	Acta Biochim. Biophys. Sin. (Shanghai)	37 (2)	75-87	2005	MIR156K,miR159B,miR159C,miR159D,miR159E,miR159F,MIR160E,MIR160F,MIR164F,MIR166L,MIR169B,MIR169C,MIR169D,MIR169J,MIR169K,MIR169M,MIR171D,MIR171E,MIR171F,MIR171I,MIR319B,MIR319A,MIR172C,MIR168A,MIR171C,MIR169F,MIR156G,MIR167I,MIR167F,MIR167G,MIR167J,MIR171B,MIR162B,MIR156L,MIR159A,MIR166H,MIR164D,MIR164E,MIR164C,MIR172A,MIR172B,MIR172D,MIR166N,MIR166B,MIR166M,MIR166G	miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,OsmiR159b, osa-MIR159b,OsmiR159c, osa-MIR159c,OsmiR159d, osa-MIR159d,OsmiR159e, osa-MIR159e,OsmiR159f, osa-MIR159f,miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p,miR160f, osa-miR160f, osa-MIR160fosa-miR160f-3p osa-miR160f-5p,miR164f, osa-miR164f,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR169b, osa-miR169b, osa-MIR169b,miR169c, osa-miR169c, osa-MIR169c,miR169d, osa-miR169d, osa-MIR169d,miR169j, osa-miR169j, osa-MIR169j,miR169k, osa-miR169k, osa-MIR169k,miR169m, osa-miR169m, osa-MIR169m,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR171e, osa-miR171eosa-miR171e-3p osa-miR171e-5p,miR171f, osa-miR171fosa-miR171f-3p osa-miR171f-5p,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,OsmiR319b, Osa-miR319b,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR167g, osa-miR167g, osa-miRNA167g ,miR167j, osa-miR167j, osa-MIR167j,miR171b, osa-miR171b,miR162b, osa-miR162b, osa-MIR162b ,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,miR164d, osa-miR164d,miR164e, osa-MIR164e,miR164c, osa-miR164c,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p,miR166m, osa-miR166m,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p
22505	1368748	Murakami,K., Ishida,Y., Masaki,A., Tatsumi,H., Murakami,S., Nakano,E., Motai,H., Kawabe,H. and Arimura,H.	Isolation and characterization of the alkaline protease gene of Asp ergillus oryzae	Agric. Biol. Chem.	55(11)	2807-2811	1991		
22507	9726865	Christensen,T., Hynes,M.J. and Davis,M.A.	The Role of the areA Regulatory Gene of Aspergillus oryzae in Nitrogen Metabolism	Appl. Environ. Microbiol.	64(9)	3232-3237	1998		
22508	11526009	Kumeda,Y. and Asao,T.	Heteroduplex Panel Analysis, a Novel Method for Genetic Identification of Aspergillus Section Flavi Strains	Appl. Environ. Microbiol.	67(9)	4084-4090	2001		
22509	16597938	Ohtaki,S., Maeda,H., Takahashi,T., Yamagata,Y., Hasegawa,F., Gomi,K., Nakajima,T. and Abe,K.	Novel Hydrophobic Surface Binding Protein, HsbA, Produced by Aspergillus oryzae	Appl. Environ. Microbiol.	72(4)	2407-2413	2006		
22510	16391082	Tominaga,M., Lee,Y.H., Hayashi,R., Suzuki,Y., Yamada,O., Sakamoto,K., Gotoh,K. and Akita,O.	Molecular Analysis of an Inactive Aflatoxin Biosynthesis Gene Cluster in Aspergillus oryzae RIB Strains	Appl. Environ. Microbiol.	72(1)	484-490	2006		
22511	8597544	Lee,B.R., Kitamoto,K., Yamada,O. and Kumagai,C.	Cloning, characterization and overproduction of nuclease S1 gene (nucS) from Aspergillus oryzae	Appl. Microbiol. Biotechnol.	44(3-4)	425-431	1995		
22512	16673111	Lee,Y.H., Tominaga,M., Hayashi,R., Sakamoto,K., Yamada,O. and Akita,O.	Aspergillus oryzae strains with a large deletion of the aflatoxin biosynthetic homologous gene cluster differentiated by chromosomal breakage	Appl. Microbiol. Biotechnol.	72(2)	339-345	2006		
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22518	16857172	Tatsumi,A., Kikuma,T., Arioka,M. and Kitamoto,K.	Aovps24, a homologue of VPS24, is required for vacuolar formation which could maintain proper growth and development in the filamentous fungus Aspergillus oryzae	Biochem. Biophys. Res. Commun.	347(4)	970-978	2006		
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22524	7763981	Gomi,K., Arikawa,K., Kamiya,N., Kitamoto,K. and Kumagai,C.	Cloning and nucleotide sequence of the acid protease-encoding gene (pepA) from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	57(7)	1095-1100	1993		
22528	12951506	Abe,A., Sone,T., Sujaya,I.N., Saito,K., Oda,Y., Asano,K. and Tomita,F.	rDNA ITS Sequence of Rhizopus oryzae: Its Application to Classification and Identification of Lactic Acid Producers	Biosci. Biotechnol. Biochem.	67(8)	1725-1731	2003		
22532	16880596	Mabashi,Y., Kikuma,T., Maruyama,J., Arioka,M. and Kitamoto,K.	Development of a Versatile Expression Plasmid Construction System for Aspergillus oryzae and Its Application to Visualization of Mitochondria	Biosci. Biotechnol. Biochem.	70(8)	1882-1889	2006		
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22534	16495665	Akao,T., Yamaguchi,M., Yahara,A., Yushiuchi,K., Fujita,H., Yamada,O., Akita,O., Ohmachi,T., Asada,Y. and Yoshida,T.	Cloning and Expression of 1,2-alpha-Mannosidase Gene (fmanIB) fromFilamentous Fungus Aspergillus oryzae: in Vivo Visualization of the FmanIBp-GFP Fusion Protein	Biosci. Biotechnol. Biochem.	70(2)	471-479	2006		
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22537	2688930	de Ruiter-Jacobs,Y.M., Broekhuijsen,M., Unkles,S.E., Campbell,E.I., Kinghorn,J.R., Contreras,R., Pouwels,P.H., van den Hondel,C.A.	A gene transfer system based on the homologous pyrG gene and efficient expression of bacterial genes in Aspergillus oryzae	Curr. Genet.	16(3)	159-163	1989		
22538	1913876	Ozeki,K., Kitamoto,K., Gomi,K., Kumagai,C., Tamura,G. and Hara,S.	Cloning and nucleotide sequence of the genomic ribonuclease T2 gene (rntB) from Aspergillus oryzae	Curr. Genet.	19(5)	367-373	1991		
22539	8252646	Morton,B.R. and Clegg,M.T.	A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae)	Curr. Genet.	24(4),	357-365	1993	RPL23.P,_,RBCL	rpl23.p,psaI, ORF36,rbcL, rbcA, OsrbcL
22540	7788722	Nakazono,M., Itadani,H., Wakasugi,T., Tsutsumi,N., Sugiura,M. and Hirai,A.	The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters.	Curr. Genet.	27(1)	184-189	1995	RPS12,NAD3,RPL16,RPS3	rps12,nad3,rpl16, pseudo-rpl16,rps3
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22547		Sugiura,M., Baev,A.A., Dzhumagaliev,E.B., Lyubomirskaya,N.V., Mizrokhi,L.Y., Il'in,Y.V., Itadani,H., Wakasugi,T., Sugita,M., Sugiura,M., Nakazono,M., Hirai,A., Nakazono,M., Itadani,H., Wakasugi,T., Tsutsumi,N., Sugiura,M., Hirai,A.	Structure of long and short copies of the mobile dispersed gene MDG3 of Drosophila melanogaster	Dokl. Akad. Nauk. SSSR	282	1483-1486	1985		
22550	16896216	Kikuma,T., Ohneda,M., Arioka,M. and Kitamoto,K.	Functional Analysis of the ATG8 Homologue Aoatg8 and Role of Autophagy in Differentiation and Germination in Aspergillus oryzae	Eukaryotic Cell	5(8)	1328-1336	2006		
22551	16467481	Shoji,J., Arioka,M. and Kitamoto,K.	Vacuolar Membrane Dynamics in the Filamentous Fungus Aspergillus oryzae	Eukaryotic Cell	5(2)	411-421	2006		
22557	17116242	Jain,M., Tyagi,A.K. and Khurana,J.P.	Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants	FEBS J.	273(23)	5245-5260	2006	TOP6A1,TOP6A3,TOP6A2,TOP6B	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsTOP6A3, OsSPO11-3, OsSPO11C,OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B,OsTOP6B, OsSPO11-6B
22561	15327973	Wei,D., Li,M., Zhang,X., Ren,Y. and Xing,L.	Identification and characterization of a novel delta12-fatty acid desaturase gene from Rhizopus arrhizus 	FEBS Lett.	573 (1-3)	45-50	2004		
22563	17233721	Kihara,J., Moriwaki,A., Tanaka,N., Ueno,M. and Arase,S.	Characterization of BLR1 gene encoding a putative blue-light regulator in the phytopathogenic fungus Bipolaris oryzae	FEMS Microbiol. Lett.	266(1)	110-118	2007		
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22565	16553861	Moriwaki,A., Kubo,E., Arase,S. and Kihara,J.	Disruption of SRM1, a mitogen-activated protein kinase gene, affects sensitivity to osmotic and ultraviolet stressors in the phytopathogenic fungus Bipolaris oryzae	FEMS Microbiol. Lett.	257(2)	253-261	2006		
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22571	11404008	Voigt,K. and Woestemeyer,J.	Phylogeny and origin of 82 zygomycetes from all 54 genera of the Mucorales and Mortierellales based on combined analysis of actin and translation elongation factor EF-1alpha genes.	Gene	270(1-2)	113-120	2001		
22572	15094197	Zhou,G., Wang,J., Zhang,Y., Zhong,C., Ni,J., Wang,L., Guo,J., Zhang,K., Yu,L. and Zhao,S.	Cloning, expression and subcellular localization of HN1 and HN1L genes, as well as characterization of their orthologs, defining an evolutionarily conserved gene family 	Gene	331	115-123	2004	_	HN1L
22573	15556301	Masood,M.S., Nishikawa,T., Fukuoka,S., Njenga,P.K., Tsudzuki,T. and Kadowaki,K.	The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice	Gene	340(1)	133-139	2004	RBCL,_,PSBA,RPS7,RPOA,_,RPL2,_,_,_,16S  rRNA,_,_,_,_,_,_,RPS3,_,PSBI,_,_,_,_,_,_,_,_,_,_,_,PSBN,RPL36,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,23S  rRNA,_,_,_,_,_,_,_,23S  rRNA,_,PSBH,_,16S  rRNA,_,_,_,_,_,_,_,_,_,RPL23,_,RPS16,PSBK,_,_,_,RPS2,_,_,CLPP,RPS7,_,NDHJ,PSAC,RPL14,NDHB,_,YCF4,PETA,RPL22,PSBL,PSBF,PSBE,_,_,RPS11,INFA,_,RPL33,_,RPS4,_,NDHC,RPS8,_,NDHF,_,NDHE,NDHG,NDHK,NDHI,NDHH,_,4.5S  rRNA,5S  rRNA,5S  rRNA,4.5S  rRNA,_,PSBM,RPS14,_,_,PSBZ,_,RPL23,RPS19,_,_,_,NDHD,PETE,_,RPS18,_,NDHB,RPOC1,RPS12,PETD,NDHA,_,RPS15,_,_,PSBC,RPL2,RPOC2,RPS19,_,_,RPL16,RPL32,_,_,_,_,_,RPS15,PSAB,RPOB,3'RPS12,_,PSBD,PSAA	rbcL, rbcA, OsrbcL,ORF40, psbJ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,rps7,rope, rpoalpha, Rpoalpha, rope, RpoA ,trnS(GCU), trnS, trnS-GCU,rpl2,trnQ(UUG), trnQ, trnQ-UUG,trnK(UUU), trnK, trnK-UUU,trnS(UGA), trnS, trnS-UGA,rrn16,trnfM(CAU), trnfM, trnfM-CAU,trnT(GGU), trnT, trnT-GGU,trnG(UCC), trnG, trnG-UCC,trnY(GUA), trnY, tmY-GUA,trnD(GUC), trnD, trnD-GUC,trnI(CAU), trnI, trnI-CAU,rps3,ORF170, ycf3, IRF170,psbI,trnC, trnC(GCA), trnC-GCA,ORF137,trnR(UCU), trnR, trnR-UCU,ORF72,trnS(GGA), trnS, trnS-GGA,trnT(UGU), trnT, trnT-UGU,trnV, trnV(UAC), trnV-UAC,trnM, trnM(CAU), trnM-CAU,ORF85,trnW(CCA), trnW, trnW-CCA,trnP(UGG), trnP, trnP-UGG,psbN, PsbN,rpl36,trnH(GUG), trnH, trnH-GUG,ORF23,trnL(UAA), trnL, trnL-UAA,trnF(GAA), trnF, trnF-GAA,ORF249,orf34,orf46,ORF109,orf39,ORF28,ORF109,trnV, trnV(GAC), trnV-GAC,trnI(GAU), trnI, trnI-GAU,ORF63,trnA(UGC), trnA, trnA-UGC,ORF133,rrn23,trnR(ACG), trnR, trnR-ACG,trnN(GUU), trnN, trnN-GUU,orf39,trnL(UAG), trnL, trnL-UAG,ORF133, ycf68,trnN(GUU), trnN, trnN-GUU,trnR(ACG), trnR, trnR-ACG,rrn23,trnI(GAU), trnI, trnI-GAU,psbH, psbF ,ORF85,rrn16,trnV, trnV(GAC), trnV-GAC,ORF249,trnL(CAA), trnL, trnL-CAA,ORF28,orf48,orf34,orf46,ORF91,trnL(CAA), trnL, trnL-CAA, L-CAA,rpl23,ORF85,rps16,psbK,ORF63,ORF70,ORF29, petN,rps2,atpI,ORF72,ORF216, ClpP, clpP,rps7,ORF230, cemA,ORF159, ndhJ,psaC,rpl14,ndhB,psaI, ORF36,Ycf4, ORF185,petA, Cytf, cytF, Cyt f,rpl22,psbL,psbF,psbE,ORF31, petL,rpl20,rps11,infA,atpH,rpl33,atpE,rps4 ,ORF133, ycf68,ndhC,rps8,ORF56, ndhH,ndhF,ORF321, ccsA,ndhE,ndhG,psbG, ndhK,ORF178, ndhI,ORF393, ndhH,ORF82,rrn4.5,rrn5,rrn5,rrn4.5,ORF64,psbM,rps14 ,trnH(GUG), trnH, trnH-GUG,trnI(CAU), trnI, trnI-CAU,psbZ, lhbA, ORF62,ORF82,rpl23,rps19,trnA(UGC), trnA, trnA-UGC,orf64,atpF,ndhD, NdhD, NDH4, NADH4,petE, petG,atpA,rps18,petB,ndhB, NDH2, NADH2,rpoC1, RPO beta', RPObeta',rps12,petD,ndhA,psbB,rps15,matK, ORF542 ,ORF137,psbC, cp43 ,rpl2,rpoC2, RPO beta", RPObeta",rps19,ORF44, psaJ,ORF35, psbT,rpl16,rpl32, ORF63,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnG(GCC).p, trnG.p,trnT(GGU).p, trnT.p,trnE(UUC), trnE, trnE-UUC,ORF23,rps15,PsaB, psaB, PsAA2,rpoB, RpoB, Rpobeta,3'rps12, 3'-rps12, rps12,atpB, AtpB, atpcf1, ATPbeta,psbD, D2, OsPsbD1, OsPsbD2,PsaA, psaA, PsAA1
22577	16172529	Xu,J.-H., Osawa,I., Tsuchimoto,S., Ohtsubo,E. and Ohtsubo,H.	Two new SINE elements, p-SINE2 and p-SINE3, from rice	Genes Genet. Syst.	80(3)	161-171	2005	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE2-r24,p-SINE2-r2001,p-SINE2-r2002,p-SINE2-r2003,p-SINE2-r2004,p-SINE2-r2005,p-SINE2-r2006,p-SINE2-r2007,p-SINE2-r2009,p-SINE2-r2010,p-SINE2-r2012,p-SINE2-r2013,p-SINE2-r2014,p-SINE2-r2015,p-SINE2-r2016,p-SINE2-r2017,p-SINE2-r2018,p-SINE3-r3001,p-SINE3-r3002,p-SINE3-r3003,p-SINE3-r3004,p-SINE3-r3005,p-SINE3-r3006,p-SINE3-r3007,p-SINE3-r3008,p-SINE3-r3009,p-SINE3-r3010,p-SINE3-r3011,p-SINE3-r3012,p-SINE3-r3013,p-SINE3-r3014,p-SINE3-r3015,p-SINE3-r3016A,p-SINE3-r3016B,p-SINE3-r3017,p-SINE3-r3018,p-SINE3-r3019,p-SINE3-r3021,p-SINE3-r3022,p-SINE3-r3023,p-SINE3-r3020,p-SINE3-r3024
22583	10925785	Han,C., Frank,M.J., Ohtsubo,H., Ohtsubo,E.	New transposable elements identified as insertions in rice transposon Tnr1	Genes Genet. Syst.	75(2)	69-77	2000	TNR1,TNR4,TNR5,TNR11,TNR12,_,TNR13	Tnr1,Tnr4,Tnr5,Tnr11,Tnr12,RIRE9,Tnr13
22584	12441643	Cheng,C., Tsuchimoto,S., Ohtsubo,H. and Ohtsubo,E.	Evolutionary relationships among rice species with AA genome based on SINE insertion analysis	Genes Genet. Syst.	77(5)	323-334	2002	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r217,p-SINE1-r601,p-SINE1-r605,p-SINE1-r606,p-SINE1-r607,p-SINE1-r701,p-SINE1-r702,p-SINE1-r703,p-SINE1-r705,p-SINE1-r706,p-SINE1-r707,p-SINE1-r708,p-SINE1-r709,p-SINE1-r801,p-SINE1-r803,p-SINE1-r804,p-SINE1-r806,p-SINE1-r807,p-SINE1-r808,p-SINE1-r901,p-SINE1-r902,p-SINE1-r903,p-SINE1-r904,p-SINE1-r905,p-SINE1-r906,p-SINE1-r907,p-SINE1-r908,p-SINE1-r29,p-SINE1-r32,p-SINE1-r46,p-SINE1-r509,p-SINE1-r63,p-SINE1-r68,p-SINE1-r70,p-SINE1-r72,p-SINE1-r69,p-SINE1-r34,p-SINE1-r55,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r502
22585	16172525	Xu,J.-H., Kurata,N., Akimoto,M., Ohtsubo,H. and Ohtsubo,E.	Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism	Genes Genet. Syst.	80(2)	129-134	2005	_,_	p-SINE1-r461,p-SINE1-r502
22587	16547098	Olsen,K.M., Caicedo,A.L., Polato,N., McClung,A., McCouch,S.R. and Purugganan,M.D.	Selection under Domestication: Evidence for a Sweep in the Rice Waxy Genomic Region 	Genetics	173(2)	975-983	2006	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
22590	16430983	Chang,P.-K., Ehrlich,K.C. and Hua,S.-S.T.	Cladal relatedness among Aspergillus oryzae isolates and Aspergillus flavus S and L morphotype isolates 	Int. J. Food Microbiol.	108(2)	172-177	2006		
22592	16310740	Suzuki,T., Tran,L.H., Yogo,M., Idota,O., Kitamoto,N., Kawai,K. and Takamizawa,K.	Cloning and Expression of NAD+-Dependent L-Arabinitol 4-Dehydrogenase Gene (ladA) of Aspergillus oryzae 	J. Biosci. Bioeng.	100(4)	472-474	2005		
22593	17189178	Feng,B., Morita,M., Imanaka,H., Imamura,K. and Nakanishi,K.	Identification of Genes from Aspergillus oryzae That Are Preferentially Expressed in Membrane-Surface Liquid Culture 	J. Biosci. Bioeng.	102(5)	470-473	2006		
22594	16233536	Ito,T., Yokoyama,E., Sato,H., Ujita,M., Funaguma,T., Furukawa,K. and Hara,A.	Xylosidases Associated with the Cell Surface of Penicillium herquei IFO 4674	J. Biosci. Bioeng.	96(4)	354-359	2003		
22595	16233653	Tran,H.L., Kitamoto,N., Kawai,K., Takamizawa,K. and Suzuki,T.	 Cloning and Expression of a NAD+-Dependent Xylitol Dehydrogenase Gene (xdhA) of Aspergillus oryzae	J. Biosci. Bioeng.	97(6)	419-422	2004		
22596	16129506	Koseki,T., Miwa,Y., Akao,T., Akita,O. and Hashizume,K.	An Aspergillus oryzae acetyl xylan esterase: Molecular cloning and characteristics of recombinant enzyme expressed in Pichia pastoris	J. Biotechnol.	121(3)	381-389	2006		
22598	16455881	Schwarz,P., Bretagne,S., Gantier,J.C., Garcia-Hermoso,D., Lortholary,O., Dromer,F. and Dannaoui,E.	Molecular identification of zygomycetes from culture and experimentally infected tissues 	J. Clin. Microbiol.	44(2)	340-349	2006		
22599		Nakase,T., Takematsu,A. and Yamada,Y.	Molecular approaches to the taxonomy of ballistosporous yeasts based on the analysis of the partial nucleotide sequences of 18S ribosomal ribonucleic acids	J. Gen. Appl. Microbiol.	39(2)	107-134	1993		
22600		Liu,D., Gong,W., Bai,Y., Luo J. and Zhu,Y.	OsHT, a Rice Gene Encoding for a Plasma-Membrane Localized HistidineTransporter	J. Integr. Plant Biol.	47(1)	92-99	2005	_	OsHT, OsLHT1, LHT1
22602	17086451	Watkins,R.F., Gray,M.W., Lang,B.F., Burger,G.	The Frequency of Eubacterium-to-Eukaryote Lateral Gene Transfers Shows Significant Cross-Taxa Variation Within Amoebozoa 	J. Mol. Evol.	63(6)	801-814	2006		
22607	1910873	Ohtsubo,H., Umeda,M. and Ohtsubo,E.	Organization of DNA sequences highly repeated in tandem in rice genomes	Jpn. J. Genet.	66(3)	241-254	1991		
22609	16385126	Lee,C.-Z., Liou,G.-Y. and Yuan,G.-F.	Comparison of the aflR gene sequences of strains in Aspergillus section Flavi 	Microbiology (Reading, Engl.)	152 (PT 1)	161-170	2006		
22610	10028288	Matsuoka,Y. and Tsunewaki,K.	Evolutionary dynamics of Ty1-copia group retrotransposons in grass shown by reverse transcriptase domain analysis	Mol. Biol. Evol.	16(2)	208-217	1999	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Ros1,Ros2,Ros3,Ros4,Ros5,Ros6,Ros7,Ros9,Ros8,Ros10,Ros11,Ros12,Ros13,Ros14,Ros15,Ros17,Ros16,Ros18,Ros19,Ros20,Ros21,Ros22,Ros23
22611	12519908	Cheng,C., Motohashi,R., Tsuchimoto,S., Fukuta,Y., Ohtsubo,H. and Ohtsubo,E.	Polyphyletic Origin of Cultivated Rice: Based on the Interspersion Pattern of SINEs	Mol. Biol. Evol.	20(1)	67-75	2003	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r69,p-SINE1-r216,p-SINE1-r25,p-SINE1-r29,p-SINE1-r32,p-SINE1-r58,p-SINE1-r46,p-SINE1-r50,p-SINE1-r505,p-SINE1-r504,p-SINE1-r509,p-SINE1-r52,p-SINE1-r54,p-SINE1-r56,p-SINE1-r59,p-SINE1-r63,p-SINE1-r68,p-SINE1-r34,p-SINE1-r70,p-SINE1-r72,p-SINE1-r64,p-SINE1-r65,p-SINE1-r66,p-SINE1-r2,p-SINE1-r210,p-SINE1-r30,p-SINE1-r51,p-SINE1-r53,p-SINE1-r57,p-SINE1-r62,p-SINE1-r215,p-SINE1-r506,p-SINE1-r507,p-SINE1-r6,p-SINE1-r55,p-SINE1-r60,p-SINE1-r61,p-SINE1-r503,p-SINE1-r501,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r502
22614	16382184	Niu,W.N., Li,Z.P. and Tan,T.	Secretion of pro- and mature Rhizopus arrhizus lipases by Pichia pastoris and properties of the proteins 	Mol Biotechnol	32 (1)	73-81	2006		
22617	2770692	Hiratsuka,J., Shimada,H., Whittier,R., Ishibashi,T., Sakamoto,M., Mori,M., Kondo,C., Honji,Y., Sun,C.R. and Meng,B.Y.	The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of cereals	Mol. Gen. Genet.	217(2-3)	185-194	1989	_,_,_,_,_,CLPP,_,_,5S  rRNA,_,5S  rRNA,23S  rRNA,_,_,_,RPS7,NDHC,PETA,_,NDHK,_,_,_,_,_,NDHB,_,_,_,RPS11,_,_,_,PSBD,RPS16,RPS3,NDHI,PSBI,_,NDHH,_,_,PSBL,PSAC,_,_,_,_,PSBE,PSBH,_,RPL33,_,_,INFA,RPS2,16S  rRNA,_,RPL36,_,NDHF,_,_,_,_,_,_,_,_,RPS18,PETD,3'RPS12,NDHD,RPL2,_,PETE,NDHB,RPS12,NDHA,RPL23,_,RPS7,_,PSBN,_,_,4.5S  rRNA,RPL22,_,_,YCF4,_,NDHG,_,RPS8,_,_,_,_,_,16S  rRNA,_,_,RPL32,4.5S  rRNA,23S  rRNA,RPS4,_,_,RPS19,_,_,_,_,PSBM,RPL23,PSBF,_,_,_,_,NDHJ,_,RPS15,RPS15,_,_,_,_,_,_,RPL14,PSBK,_,_,RPL16,RPS14,_,_,PSBA,PSBC,RPOA,PSAB,RPOC2,PSAA,RPL2,RPOC1,_,_,NDHE,_,_,RBCL,_,_,_,_,PSBZ,_,_,_,RPOB	trnF(GAA), trnF, trnF-GAA,trnI.p,ORF133,ORF321, ccsA,trnI(CAU), trnI, trnI-CAU,ORF216, ClpP, clpP,trnI(GAU), trnI, trnI-GAU,trnV, trnV(GAC), trnV-GAC,rrn5,trnI(GAU), trnI, trnI-GAU,rrn5,rrn23,trnR(ACG), trnR, trnR-ACG,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnL(CAA), trnL, trnL-CAA,rps7,ndhC,petA, Cytf, cytF, Cyt f,ORF31, petL,psbG, ndhK,ORF42,trnL(UAG), trnL, trnL-UAG,trnH(GUG), trnH, trnH-GUG,rpl20,ORF137,ndhB,ORF133, ycf68,ORF63,ORF72,rps11,ORF28,ORF137,ORF85,psbD, D2, OsPsbD1, OsPsbD2,rps16,rps3,ORF178, ndhI,psbI,ORF63,ORF393, ndhH,ORF82,ORF133, ycf68,psbL,psaC,trnK(UUU), trnK, trnK-UUU,trnS(UGA), trnS, trnS-UGA,ORF91,trnQ(UUG), trnQ, trnQ-UUG,psbE,psbH, psbF ,ORF82,rpl33,ORF23,ORF249,infA,rps2,rrn16,atpI,rpl36,ORF40, psbJ,ndhF,ORF100,trnN(GUU), trnN, trnN-GUU,trnS(GCU), trnS, trnS-GCU,trnG(GCC).p, trnG.p,trnT(UGU), trnT, trnT-UGU,trnA(UGC), trnA, trnA-UGC,ORF28,atpF,rps18,petD,3'rps12, 3'-rps12, rps12,ndhD, NdhD, NDH4, NADH4,rpl2,ORF170, ycf3, IRF170,petE, petG,ndhB, NDH2, NADH2,rps12,ndhA,rpl23,ORF106, accD,rps7,ORF85,psbN, PsbN,ORF29, petN,ORF70,rrn4.5,rpl22,trnR(UCU), trnR, trnR-UCU,psaI, ORF36,Ycf4, ORF185,ORF35, psbT,ndhG,atpH,rps8,trnV, trnV(GAC), trnV-GAC,trnA(UGC), trnA, trnA-UGC,ORF56, ndhH,ORF72,trnR(ACG), trnR, trnR-ACG,rrn16,ORF249,trnH(GUG), trnH, trnH-GUG,rpl32, ORF63,rrn4.5,rrn23,rps4 ,ORF230, cemA,trnS(GGA), trnS, trnS-GGA,rps19,ORF85,trnY(GUA), trnY, tmY-GUA,trnI(CAU), trnI, trnI-CAU,ORF23,psbM,rpl23,psbF,ORF44, psaJ,trnG(UCC), trnG, trnG-UCC,trnT(GGU), trnT, trnT-GGU,trnfM(CAU), trnfM, trnfM-CAU,ORF159, ndhJ,psbB,rps15,rps15,trnD(GUC), trnD, trnD-GUC,trnP(UGG), trnP, trnP-UGG,trnT(GGU).p, trnT.p,trnN(GUU), trnN, trnN-GUU,trnM, trnM(CAU), trnM-CAU,trnL(CAA), trnL, trnL-CAA, L-CAA,rpl14,psbK,trnV, trnV(UAC), trnV-UAC,trnW(CCA), trnW, trnW-CCA,rpl16,rps14 ,trnL(UAA), trnL, trnL-UAA,petB,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,psbC, cp43 ,rope, rpoalpha, Rpoalpha, rope, RpoA ,PsaB, psaB, PsAA2,rpoC2, RPO beta", RPObeta",PsaA, psaA, PsAA1,rpl2,rpoC1, RPO beta', RPObeta',atpE,trnC, trnC(GCA), trnC-GCA,ndhE,atpA,atpB, AtpB, atpcf1, ATPbeta,rbcL, rbcA, OsrbcL,ORF109,trnE(UUC), trnE, trnE-UUC,ORF64,ORF64,psbZ, lhbA, ORF62,ORF109,rps19,matK, ORF542 ,rpoB, RpoB, Rpobeta
22621	7808394	Ohtsubo,H. and Ohtsubo,E.	Involvement of transposition in dispersion of tandem repeat sequences (TrsA) in rice genomes	Mol. Gen. Genet.	245(4)	449-455	1994		
22622	8628213	Motohashi,R., Ohtsubo,H. and Ohtsubo,E.	Identification of Tnr3, a Suppressor-Mutator/Enhancer-like transposable element from rice	Mol. Gen. Genet.	250(2)	148-152	1996	TRN3	Tnr3
22625	10071212	Noma,K., Ohtsubo,E. and Ohtsubo,H.	Non-LTR retrotransposons (LINEs) as ubiquitous components of plant genomes	Mol. Gen. Genet.	261(1)	71-79	1999	_,_,_,_,_,_,_,_,_,_,_,_,_,_	RILN1,RILN2,RILN3,RILN4,RILN5,RILN6,RILN7,RILN8,RILN9,RILN10,RILN11,RILN13,RILN12,RILN14
22626	11212914	Carrillo,C., Chapdelaine,Y. and Bonen,L.	Variation in sequence and RNA editing within core domains of mitochondrial group II introns among plants	Mol. Gen. Genet.	264(5)	595-603	2001	NAD1,NAD7	nad1, nadI, nadIB,nad7
22627	16470383	Takahashi,T., Masuda,T. and Koyama,Y.	Enhanced gene targeting frequency in ku70 and ku80 disruption mutants of Aspergillus sojae and Aspergillus oryzae	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275(5)	460-470	2006		
22629	12471441	Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.	The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(4)	434-445	2002	_,NAD1,_,_,5S  rRNA,_,_,_,_,_,_,_,_,_,RPL16,RPS12,18S  rRNA,RPS3,NAD4L,_,26S  rRNA,_,RPS7,_,_,RPS19,_,RPS11.P,NAD2,_,_,_,_,_,RPS13,_,_,RPS2,_,_,_,_,_,RPS7,NAD5,_,_,_,_,_,_,_,_,_,RPS1,_,_,_,_,_,_,_,NAD9,_,NAD6,_,RPL2,RPS4,_,_,GSLm,_,NAD7,_,_,_,NAD4,_,_,_	trnP(TGG), trnP,nad1, nadI, nadIB,trnS(GCT), trnS,trnM(CAT), trnM,rrn5,trnH(GTG), trnH,trnS(TGA), trnS,trnM(CAT), trnM,trnW(CCA), trnW,trnP(TGG), trnP,trnQ(TTG), trnQ,trnI(CAT), trnI,trnD(GTC), trnD,trnK(TTT), trnK,rpl16, pseudo-rpl16,rps12,rrn18,rps3,nad4L,trnY(GTA), trnY,rrn26,trnR(TCT), trnR,rps7,orf490,orf224, orf224a, orf224b,rps19,orf160, orf160b ,rps11.p, pseudo-rps11 ,nad2,trnV.p, pseudo-trnV, trnV,trnfM(CAT), trnfM,ccmC, orf240,trnI, pseudo-trnI,orfX,rps13,orf176, orf173 ,trnE(TTC), trnE,rps2, orf483 ,trnC(GCA), trnC,trnS(GGA), trnS,trnF(GAA), trnF,orf162, orf162-1,orf152a, orf152b,rps7,nad5,orf258, orf317,orfB, atp8 ,orf181,orf183,orf288, LD-orf310,cox2, coxII,orf153,orf152b, orf152b-1, orf152,orf187, orf187-1,rps1, rps1a, rps1b, rps1-1,ccmFn, ccmFn-1,orf284, orf284-1,orf165, orf165-1,rps14, rps14.p, pseudo-rps14,rpl5, rpl5-1,orf173, orf173-1, orf173b,ccmB,nad9, nad9-1, CI-27kD, CI-27KD,orf25, atp4,nad6,orf194,rpl2,rps4,orf161,mat-r, mat-r-1,orf241, OsGSLm, OsGSLmt, GSLmt,ccmFc, ccmFc-1,nad7,coxI, COX1, cox1-1, cox1,cox3, coxIII, cox3a, cox3b, cox3c,cob, cob-1, cob-like,nad4, nadIV,atp9, RMtATP9, aatp9,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,atp1, atp1-1, ATP1
22633	16463049	Bao,W., Zhang,W., Yang,Q., Zhang,Y., Han,B., Gu,M., Xue,Y. and Cheng,Z.	Diversity of centromeric repeats in two closely related wild rice species, Oryza officinalis and Oryza rhizomatis 	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275 (5)	421-430	2006		
22634	2785629	Wirsel,S., Wirsel,S., Lachmund,A., Wildhardt,G., Ruttkowski,E.	Three alpha amylase genes of aspergillus oryzae exhibit identical intron-exon organisation	Mol. Microbiol.	3(1)	3-14	1989		
22635	16781873	Frealle,E., Noel,C., Nolard,N., Symoens,F., Felipe,M.S., Dei-Cas,E., Camus,D., Viscogliosi,E. and Delhaes,L.	Manganese superoxide dismutase based phylogeny of pathogenic fungi 	Mol. Phylogenet. Evol.	41(1)	28-39	2006		
22638	16941905	Zellerhoff,N., Jarosch,B., Groenewald,J.Z., Crous,P.W. and Schaffrath,U.	Nonhost resistance of barley is successfully manifested against Magnaporthe grisea and a closely related Pennisetum-infecting lineage but is overcome by Magnaporthe oryzae 	Mol. Plant Microbe Interact.	19 (9)	1014-1022	2006		
22639	17015001	Tuckwell,D., Lavens,S.E. and Birch,M.	Two families of extracellular phospholipase C genes are present in aspergilli 	Mycol. Res.	110 (PT 10)	1140-1151	2006		
22640	16378718	Cai,L., Jeewon,R. and Hyde,K.D.	Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology 	Mycol. Res.	110 (PT 2)	137-150	2006		
22641		Ogawa,Y., Tokumasu,S. and Tubaki,K.	An original habitat of tempeh molds	Mycoscience	45	271-276	2004		
22645	12520302	Jiang,N., Bao,Z., Zhang,X., Hirochika,H., Eddy,S.R., McCouch,S.R. and Wessler,S.R.	An active DNA transposon family in rice 	Nature	421 (6919)	163-167	2003	PONG,PING,_,_,MPING	Pong,Ping,A,B,mPing
22648	6093039	Kao,T., Moon,E. and Wu,R.	Cytochrome oxidase subunit II gene of rice has an insertion sequence within the intron	Nucleic Acids Res.	12(19)	7305-7315	1984	_	COII, coxII
22653	1708498	Shimada,H. and Sugiura,M.	 Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes 	Nucleic Acids Res.	19(5)	983-995	1991	NDHA,_,_,_,RPL2,NDHE,PSBA,NDHB,_,NDHJ,PETA,PSBF,PSBE,CLPP,NDHC,NDHF,4.5S  rRNA,23S  rRNA,5S  rRNA,4.5S  rRNA,PSAC,NDHI,NDHH,16S  rRNA,NDHG,23S  rRNA,16S  rRNA,PSBD,RPL36,PSBK,RPS2,PSBI,RPL33,RPS16,RPS3,RPS19,PSBH,PSBL,PSBN,RPS14,PSBM,_,_,_,_,_,_,_,_,_,_,_,_,_,PSAB,RPOC1,RPS18,NDHB,PETD,RPS15,RPS15,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RPL23,_,_,_,_,_,_,_,_,_,_,_,RPS7,_,_,_,_,_,_,RPS11,INFA,_,RPS7,_,RPS8,_,_,_,RPL22,_,RPS4,_,_,_,_,_,5S  rRNA,_,_,RPL14,RPL23,_,RBCL,_,PSBC,RPOA,NDHD,_,RPOB,_,3'RPS12,_,RPL16,RPL32,_,_,_,_,_,_,_,RPS12,RPL2,PSAA,RPOC2	ndhA,trnL(UAA), trnL, trnL-UAA,atpA,trnF(GAA), trnF, trnF-GAA,rpl2,ndhE,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,ndhB,atpB, AtpB, atpcf1, ATPbeta,ORF159, ndhJ,petA, Cytf, cytF, Cyt f,psbF,psbE,ORF216, ClpP, clpP,ndhC,ndhF,rrn4.5,rrn23,rrn5,rrn4.5,psaC,ORF178, ndhI,ORF393, ndhH,rrn16,ndhG,rrn23,rrn16,psbD, D2, OsPsbD1, OsPsbD2,rpl36,psbK,rps2,psbI,rpl33,rps16,rps3,rps19,psbH, psbF ,psbL,psbN, PsbN,rps14 ,psbM,petG,psb(J),psaJ,trnS(GCU), trnS, trnS-GCU,trnQ(UUG), trnQ, trnQ-UUG,trnK(UUU), trnK, trnK-UUU,trnS(UGA), trnS, trnS-UGA,trnfM(CAU), trnfM, trnfM-CAU,trnT(GGU), trnT, trnT-GGU,trnG(UCC), trnG, trnG-UCC,trnY(GUA), trnY, tmY-GUA,trnD(GUC), trnD, trnD-GUC,trnH(GUG), trnH, trnH-GUG,PsaB, psaB, PsAA2,rpoC1, RPO beta', RPObeta',rps18,ndhB, NDH2, NADH2,petD,rps15,rps15,trnC, trnC(GCA), trnC-GCA,trnR(UCU), trnR, trnR-UCU,trnS(GGA), trnS, trnS-GGA,trnT(UGU), trnT, trnT-UGU,trnV, trnV(UAC), trnV-UAC,trnM, trnM(CAU), trnM-CAU,ORF82,trnW(CCA), trnW, trnW-CCA,trnP(UGG), trnP, trnP-UGG,ORF100,ORF109,trnV, trnV(GAC), trnV-GAC,trnI(GAU), trnI, trnI-GAU,trnA(UGC), trnA, trnA-UGC,ORF133,trnR(ACG), trnR, trnR-ACG,trnN(GUU), trnN, trnN-GUU,trnL(UAG), trnL, trnL-UAG,trnN(GUU), trnN, trnN-GUU,trnR(ACG), trnR, trnR-ACG,trnI(GAU), trnI, trnI-GAU,trnA(UGC), trnA, trnA-UGC,trnV, trnV(GAC), trnV-GAC,ORF249,ORF28,trnL(CAA), trnL, trnL-CAA,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnE(UUC), trnE, trnE-UUC,rpl23,trnH(GUG), trnH, trnH-GUG,ORF28,ORF63,ORF109,ORF64,ORF23,ORF91,ORF29, petN,ORF72,atpI,ORF106, accD,rps7,ORF42,ORF249,psaI, ORF36,ORF85,ORF31, petL,rpl20,rps11,infA,atpH,rps7,ORF133, ycf68,rps8,ORF85,ORF56, ndhH,ORF321, ccsA,rpl22,ORF63,rps4 ,ORF72,ORF82,ORF133, ycf68,ORF85,trnI(CAU), trnI, trnI-CAU,rrn5,ORF64,trnL(CAA), trnL, trnL-CAA, L-CAA,rpl14,rpl23,trnI(CAU), trnI, trnI-CAU,rbcL, rbcA, OsrbcL,ORF170, ycf3, IRF170,psbC, cp43 ,rope, rpoalpha, Rpoalpha, rope, RpoA ,ndhD, NdhD, NDH4, NADH4,petB,rpoB, RpoB, Rpobeta,matK, ORF542 ,3'rps12, 3'-rps12, rps12,ORF35, psbT,rpl16,rpl32, ORF63,atpE,ORF70,ORF230, cemA,ORF23,ORF137,psbB,atpF,rps12,rpl2,PsaA, psaA, PsAA1,rpoC2, RPO beta", RPObeta"
22656	16808934	Yang,G., Nakamura,H., Ichikawa,H., Kitano,H. and Komatsu,S.	OsBLE3, a brassinolide-enhanced gene, is involved in the growth of rice	Phytochemistry	67(14)	1442-1454	2006	BLE3,D61,BRD1	OsBLE3,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
22657	15279994	Passardi,F., Longet,D., Penel,C. and Dunand,C.	The class III peroxidase multigenic family in rice and its evolution in land plants	Phytochemistry	65(13)	1879-1893	2004	_,_,_,_,ATP6,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,POX1,_,POX,_,_,_,_,_,AM1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,POXA,_,_,_,POX5.1,_,_,_,POX22.3,_,POXN,_,_,_,POX3006,POXGX9,POX8.1,_,_,_,_,_	prx16, OsPOD1, POD1,prx5,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,prx4,atp6, OsPOX1, prx3, POX1,prx2,prx7,prx8,prx6,prx10,prx1,prx9,prx14,prx17,prx18,prx19,prx20,prx21,prx26,prx24,prx25,prx29,prx30,prx31,prx32,prx34,prx36,prx35,prx37,prx40,prx42,prx44,prx39,prx45,prx49,prx50,prx51,prx52,prx54,prx55,prx56,prx57,prx58,prx63,prx67,prx70,prx73,prx77,prx76,prx79,prx80,prx81,prx82,prx84,prx85,prx87,prx88,prx89,prx91,prx92,prx93,prx100, prx101,prx102,prx103,prx98,prx107,prx104,prx108,prx116,prx118,prx119,prx120,prx121,prx122,prx123,prx124,prx127,prx129,prx134,prx137,prx66,prx138,Pox1(Px,Pe), PRX74, Px, Pe, Pox1, prx74,RP-2 or RP-4, prx13,Pox, prx135,prx90,prx33,prx75,prx64,prx61,AM1, prx53,prx46, POD1, OSPOD1,prx130,prx69,prx128,prx72,prx97, Osprx97,prx59, OsPRX59,prx78, PRX78, OsPRX78,prx62, OsPRX62,prx12, PRX12, OsPRX12,OsPOD, prx11, Osprx11,prx125, PRX125, OsPRX125 ,prx27, PRX27, OsPRX27 ,prx65, PRX65, OsPRX65,prx43, OsPRX43,prx95, OsPRX95,prx68,prx23,prx47,prx99,prx106,prx136,prx132, prx133,poxA, prx126, prxRPA, RPA,prx131,prx83,prx15,POX5.1, prx113, POX5,prx60, POX-1,prx109, POX-2,prx117,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,prx86, PRX86, OsPRX86,poxN, prx38, prxRPN, RPN, poxN/PRX38,prx22, OsPRX22,prx71, Osprx71,prx105, OsPRX105,POX3006, prx114, PO-C1, POC-1, POC1,POXgX9, OsPOXgX9, prx112,POX8.1, prx110, POX8,prx48,prx94,prx28,prx96,prx115
22664		Nakamura,H., Satoh,W., Hidaka,S., Kagaya,Y., Ejiri,S. and Tsutsumi,K	Genomic structure of the rice aldolase isozyme C-1 gene and its regulation through a Ca-mediated protein kinase-phosphatase pathway	Plant Mol. Biol.	30	381-385	1996		
22669		Vitha,S., Froehlich,J.E., Koksharova,O., Pyke,K.A., Van Erp,H., Osteryoung,K.W., Vitha,S., Koksharova,O., van Erp,H., Froehlich,J.E., Osteryoung,K.W.	ARC6 Is a J-Domain Plastid Division Protein and an Evolutionary Descendant of the Cyanobacterial Cell Division Protein Ftn2 	Plant Cell	15 (8)	1918-1933	2003		
22681		Shikanai,T., Yang,Z.-Q. and Yamada,Y.	Properties of the circular plasmid-like DNA B1 from mitochondria of cytoplasmic male-sterile rice	Plant Cell Physiol.	28(7)	1243-1251	1987		
22682	7545979	Itadani,H., Wakasugi,T., Sugita,M., Sugiura,M., Nakazono,M. and Hirai,A.	Nucleotide sequence of a 28-kbp portion of rice mitochondrial DNA: the existence of many sequences that correspond to parts of mitochondrial genes in intergenic regions 	Plant Cell Physiol.	35(8)	1239-1244	1994	_,RPS2	trnfM(CAT), trnfM,rps2, orf483 
22683	8528607	Nishiwaki,S., Nakazono,M., Tsutsumi,N. and Hirai,A.	Structure of a gene for subunit 9 of NADH dehydrogenase(nad9) in rice mitochondria and RNA editing of its transcript	Plant Cell Physiol.	36(6)	1135-1138	1995	NAD9	nad9, nad9-1, CI-27kD, CI-27KD
22726	15604740	Fujimoto,S., Matsunaga,S., Yonemura,M., Uchiyama,S., Azuma,T. and Fukui,K.	Identification of a novel plant MAR DNA binding protein localized on chromosomal surfaces	Plant Mol. Biol.	56(2)	225-239	2004	_,_	OsAHL2, AHL2,OsAHL1, AHL1
22736		Dela Paz,M.A.G., Goodwin,P.H., Raymundo,A.K., Ardales,E.Y. and Vera Cruz,C.M.	Phylogenetic analysis based on ITS sequences and conditions affecting the type of conidial germination of Bipolaris oryzae 	Plant Pathol.	55 (6)	756-765	2006		
22741	15047897	Zhang,Z.L., Xie,Z., Zou,X., Casaretto,J., Ho,T.H. and Shen,Q.J.	A Rice WRKY Gene Encodes a Transcriptional Repressor of the Gibberellin Signaling Pathway in Aleurone Cells 	Plant Physiol.	134 (4)	1500-1513	2004	WRKY2,WRKY32,WRKY14,WRKY34,WRKY10,WRKY48,WRKY25,WRKY49,WRKY50,WRKY66,WRKY21,WRKY73,WRKY1,WRKY22,WRKY75,WRKY70,WRKY35,WRKY7,WRKY9,WRKY72,WRKY29,WRKY62,WRKY11,WRKY77,WRKY3,WRKY53,WRKY23,WRKY42,WRKY54,WRKY6,WRKY26,WRKY51,WRKY28,WRKY12,WRKY64,WRKY40,WRKY60,WRKY37,WRKY39,WRKY36,WRKY8,WRKY47,WRKY16,WRKY52,WRKY24,WRKY43,WRKY30,WRKY69,WRKY17,WRKY67,WRKY57,WRKY58,WRKY46,WRKY56,WRKY41,WRKY55,WRKY4,WRKY63,WRKY13,WRKY76,WRKY38,WRKY61,WRKY65,WRKY45,WRKY68,WRKY71,WRKY31,WRKY5,WRKY33,WRKY18,WRKY74,WRKY15,WRKY19,WRKY20,WRKY27	OsWRKY2,OsWRKY32,OsWRKY14,OsWRKY34,OsWRKY10,OsWRKY48,OsWRKY25, OsWRKY44, WRKY44,OsWRKY49,OsWRKY50,OsWRKY66,OsWRKY21,OsWRKY73,OsWRKY1, OsWRKY1v2,OsWRKY22,OsWRKY75,OsWRKY70,OsWRKY35,OsWRKY7,OsWRKY9,OsWRKY72, WRKY-72,OsWRKY29,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY77, WRKY-77,OsWRKY3 ,OsWRKY53, WRKY-53,OsWRKY23,OsWRKY42, WRKY-42,OsWRKY54,OsWRKY6, WRKY-6,OsWRKY26, OsWRKY59,OsWRKY51,OsWRKY28,OsWRKY12,OsWRKY64,OsWRKY40,OsWRKY60,OsWRKY37,OsWRKY39,OsWRKY36,OsWRKY8,OsWRKY47,OsWRKY16,OsWRKY52,OsWRKY24,OsWRKY43,OsWRKY30,OsWRKY69,OsWRKY17,OsWRKY67,OsWRKY57,OsWRKY58,OsWRKY46, WRKY91, OsWRKY91,OsWRKY56,OsWRKY41,OsWRKY55,OsWRKY4, WRKY122, OsWRKY122,OsWRKY63,OsWRKY13,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY38,OsWRKY61, OsWRKY103, WRKY103,OsWRKY65,OsWRKY45,OsWRKY68,OsWRKY71, WRKY-71,OsWRKY31,OsWRKY5 ,OsWRKY33,OsWRKY18,OsWRKY74,OsWRKY15,OsWRKY19,OsWRKY20,OsWRKY27
22743	15618416	Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ.	Annotations and Functional Analyses of the Rice WRKY Gene Superfamily Reveal Positive and Negative Regulators of Abscisic Acid Signaling in Aleurone Cells 	Plant Physiol.	137 (1)	176-189	2005	WRKY2,WRKY43,WRKY21,WRKY70,WRKY29,WRKY36,WRKY3,WRKY37,WRKY39,WRKY40,WRKY35,WRKY54,WRKY17,WRKY52,WRKY30,WRKY66,WRKY28,WRKY69,WRKY57,WRKY75,WRKY14,WRKY9,WRKY8,WRKY7,WRKY64,WRKY67,WRKY46,WRKY42,WRKY60,WRKY25,WRKY16,WRKY90,WRKY24,WRKY72,WRKY10,WRKY62,WRKY1,WRKY71,WRKY4,WRKY19,WRKY23,WRKY41,WRKY13,WRKY56,WRKY26,WRKY61,WRKY11,WRKY38,WRKY53,WRKY58,WRKY32,WRKY31,WRKY34,WRKY33,WRKY55,WRKY48,WRKY49,WRKY5,WRKY63,WRKY50,WRKY65,WRKY45,WRKY18,WRKY68,WRKY76,WRKY87,WRKY73,WRKY6,WRKY77,WRKY20,WRKY74,WRKY102,WRKY51,WRKY22,WRKY12,WRKY15,WRKY47,WRKY27	OsWRKY2,OsWRKY43,OsWRKY21,OsWRKY70,OsWRKY29,OsWRKY36,OsWRKY3 ,OsWRKY37,OsWRKY39,OsWRKY40,OsWRKY35,OsWRKY54,OsWRKY17,OsWRKY52,OsWRKY30,OsWRKY66,OsWRKY28,OsWRKY69,OsWRKY57,OsWRKY75,OsWRKY14,OsWRKY9,OsWRKY8,OsWRKY7,OsWRKY64,OsWRKY67,OsWRKY46, WRKY91, OsWRKY91,OsWRKY42, WRKY-42,OsWRKY60,OsWRKY25, OsWRKY44, WRKY44,OsWRKY16,OsWRKY90,OsWRKY24,OsWRKY72, WRKY-72,OsWRKY10,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY1, OsWRKY1v2,OsWRKY71, WRKY-71,OsWRKY4, WRKY122, OsWRKY122,OsWRKY19,OsWRKY23,OsWRKY41,OsWRKY13,OsWRKY56,OsWRKY26, OsWRKY59,OsWRKY61, OsWRKY103, WRKY103,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY38,OsWRKY53, WRKY-53,OsWRKY58,OsWRKY32,OsWRKY31,OsWRKY34,OsWRKY33,OsWRKY55,OsWRKY48,OsWRKY49,OsWRKY5 ,OsWRKY63,OsWRKY50,OsWRKY65,OsWRKY45,OsWRKY18,OsWRKY68,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY87, OsSUSIBA2-like,OsWRKY73,OsWRKY6, WRKY-6,OsWRKY77, WRKY-77,OsWRKY20,OsWRKY74,OsWRKY102,OsWRKY51,OsWRKY22,OsWRKY12,OsWRKY15,OsWRKY47,OsWRKY27
22744	16169968	Bogs,J., Downey,M.O., Harvey,J.S., Ashton,A.R., Tanner,G.J. and Robinson,S.P.	Proanthocyanidin synthesis and expression of genes encoding leucoanthocyanidin reductase and anthocyanidin reductase in developing grape berries and grapevine leaves	Plant Physiol.	139(2)	652-663	2005	LAR	OsLAR
22747	16384910	Tian,X., Zheng,J., Hu,S. and Yu,J.	The Rice Mitochondrial Genomes and Their Variations 	Plant Physiol.	140(2)	401-410	2006	_,26S  rRNA,NAD3,5S  rRNA,_,RPS11.P,_,_,_,_,_,RPS13,_,RPS2,_,_,_,_,_,_,_,_,_,_,_,_,_,NAD2,_,_,RPS19,RPS12,_,_,_,_,RPS4,_,_,_,RPS7,_,_,_,_,_,_,_,_,_,_,NAD5,_,NAD4L,_,_,_,_,NAD6,RPL16,_,_,_,_,_,_,_,_,_,NAD7,_,NAD4,NAD1,_,_,5S  rRNA,_,_,_,_,_,_,_,26S  rRNA,_,_,_,RPS1,_,_,_,_,18S  rRNA,_,GSLm	trnE(UUC), trnE, trnE-UUC,rrn26,nad3,rrn5,trnH(GTG), trnH,rps11.p, pseudo-rps11 ,trnW(CCA), trnW,rrn18,trnI(CAT), trnI,orf288, LD-orf310,trnW(CCA), trnW,rps13,rps14, rps14.p, pseudo-rps14,rps2, orf483 ,trnS(GGA), trnS,orf162, orf162-1,orf194,orf153,rps14, rps14.p, pseudo-rps14,orf173, orf173-1, orf173b,mat-r, mat-r-1,orf187, orf187-1,ccmFc, ccmFc-1,trnL(AAC), trnL,trnQ(TTG), trnQ,cox2, coxII,trnS(TGA), trnS,nad2,orfX,orf176, orf173 ,rps19,rps12,trnQ(TTG), trnQ,orf181,trnF(GAA), trnF,ccmC, orf240,rps4,orf25, atp4,orf152a, orf152b,orf490,rps7,trnM(CAT), trnM,trnM(CAT), trnM,ccmB,orfB, atp8 ,trnD(GTC), trnD,trnM(CAT), trnM,orf183,trnK(TTT), trnK,trnP(TGG), trnP,orf224, orf224a, orf224b,nad5,orf284, orf284-1,nad4L,ccmFn, ccmFn-1,orf165, orf165-1,orf160, orf160b ,nad9, nad9-2,nad6,rpl16, pseudo-rpl16,trnP(TGG), trnP,orf161,trnC(GCA), trnC,trnH(GTG), trnH,trnP(TGG), trnP,orf152b, orf152b-1, orf152,trnY(GTA), trnY,trnP(TGG), trnP,trnE(TTC), trnE,nad7,cox3, coxIII, cox3a, cox3b, cox3c,nad4, nadIV,nad1, nadI, nadIB,atp9, RMtATP9, aatp9,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,rrn5,rpl5, rpl5-1,trnS(GCT), trnS,trnC(GCA), trnC,trnfM(CAT), trnfM,trnY(GTA), trnY,atp1, atp1-2,trnR(TCT), trnR,rrn26,trnI, pseudo-trnI,trnS(GGA), trnS,trnN(GTT), trnN,rps1, rps1a, rps1b, rps1-1,trnE(TTC), trnE,trnF(GAA), trnF,coxI, COX1, cox1-1, cox1,cob, cob-1, cob-like,rrn18,orf162, orf162-2,orf241, OsGSLm, OsGSLmt, GSLmt
22748	17012407	Chu,H., Qian,Q., Liang,W., Yin,C., Tan,H., Yao,X., Yuan,Z., Yang,J., Huang,H., Luo,D., Ma,H. and Zhang,D.	The FLORAL ORGAN NUMBER4 Gene Encoding a Putative Ortholog of Arabidopsis CLAVATA3 Regulates Apical Meristem Size in Rice 	Plant Physiol.	142 (3)	1039-1052	2006	FON1,_,FON2,_,_,_,_,_,_,_,_,_,_,_	OsFON1, fon1, OsRLCK219, RLCK219,Os_CLE15, OsCLE15, CLE15,fon2, FON4, OsFON4, FON2/FON4, TG1,Os_CLE24, OsCLE24, CLE24,Os_CLE51, OsCLE51, CLE51,Os_CLE46, OsCLE46, CLE46,Os_CLE44, OsCLE44, CLE44,Os_CLE49, OsCLE49, CLE49,Os_CLE45, OsCLE45, CLE45,Os_CLE43, OsCLE43, CLE43,Os_CLE42, OsCLE42, CLE42,Os_CLE47, OsCLE47, CLE47,Os_CLE50, OsCLE50, CLE50,Os_CLE48, OsCLE48, CLE48
22752		Vitte,C., Chaparro,C., Quesneville,H. and Panaud,O.	Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8 	Plant Sci.	172 (1)	8-19	2007	SQUIQ,SPIP	Squiq,Spip
22755	12430018	van den Brule,S. and Smart,C.C.	The plant PDR family of ABC transporters 	Planta.	216 (1)	95-106	2002	PDR10,PDR11,PDR8,PDR9	OsABCG34, OsPDR10, OsPDR1,OsABCG35, OsPDR11, OsPDR2,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsPDR9, ospdr9, OsPDR3, PDR3
22756	15452707	Tobias,C.M. and Chow,E.K.	Structure of the cinnamyl-alcohol dehydrogenase gene family in rice and promoter activity of a member associated with lignification 	Planta.	220 (5)	678-688	2005	CAD6,FC1,CAD4,CAD1,CAD3,CAD5,CAD8A,CAD8B,CAD8D,CAD9,CAD8C,GH2	OsCAD6,OsCAD7, fc1, CAD7,OsCAD4,OsCAD1,OsCAD3,OsCAD5,OsCAD8A,OsCAD8B,OsCAD8D,OsCAD9,OsCAD8C, CAD8c,gh2, CAD2, CAD, OsCAD2, GH2 
22762	16896793	Yang, Q., Liang, C., Zhuang, W., Li, J., Deng, H., Deng, Q. and Wang, B.	Characterization and identification of the candidate gene of rice thermo-sensitive genic male sterile gene tms5 by mapping 	Planta.	225 (2)	321-330	2007	TMS5	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
22764	15210936	Schneider,C., Will,C.L., Brosius,J., Frilander,M.J. and Luhrmann,R.	Identification of an evolutionarily divergent U11 small nuclear ribonucleoprotein particle in Drosophila 	Proc. Natl. Acad. Sci. U.S.A.	101 (26)	9584-9589	2004	_	
22768	8710903	Bureau,T.E., Ronald,P.C. and Wessler,S.R.	A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes	Proc. Natl. Acad. Sci. U.S.A.	93(16)	8524-8529	1996	GAIJIN-OS1,GAIJIN-OS2,GAIJIN-OS3,GAIJIN-OS4,DITTO-OS1,DITTO-OS2,WANDERER-OS1,WANDERER-OS2,WANDERER-OS3,WANDERER-OS4,WANDERER-OS5,WANDERER-OL1,EXPLORER-OS1,EXPLORER-OS2,EXPLORER-OS3,CASTAWAY-OS1,CASTAWAY-OS2	Gaijin-Os1,Gaijin-Os2,Gaijin-Os3,Gaijin-Os4,Ditto-Os1,Ditto-Os2,Wanderer-Os1,Wanderer-Os2,Wanderer-Os3,Wanderer-Os4,Wanderer-Os5,Wanderer-Ol1,Explorer-Os1,Explorer-Os2,Explorer-Os3,Castaway-Os1,Castaway-Os2
22773	15016992	Yan,L., Loukoianov,A., Blechl,A., Tranquilli,G., Ramakrishna,W., SanMiguel,P., Bennetzen,J.L., Echenique,V. and Dubcovsky,J.	The wheat VRN2 gene is a flowering repressor down-regulated by vernalization	Science	303 (5664)	1640-1644	2004	_,-	OsCCT35, OsCMF11, OsH ,OsI
22775	15965650	Yang,T.J., Yu,Y., Chang,S.B., de Jong,H., Oh,C.S., Ahn,S.N., Fang,E. and Wing,R.A.	Toward closing rice telomere gaps: mapping and sequence characterization of rice subtelomere regions 	Theor. Appl. Genet.	111 (3)	467-478	2005		
22782		Motohashi,R., Mochizuki,K., Ohtsubo,H. and Ohtsubo,E.	Structures and distribution of p-SINE1 members in rice genomes	Theor. Appl. Genet.	95(3)	359-368	1997	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r21,p-SINE1-r23,p-SINE1-r24,p-SINE1-r26,p-SINE1-r22,p-SINE1-r27,p-SINE1-r28,p-SINE1-r31,p-SINE1-r33,p-SINE1-r35,p-SINE1-r36,p-SINE1-r100,p-SINE1-r101,p-SINE1-r102,p-SINE1-r103,p-SINE1-r104,p-SINE1-r105,p-SINE1-r106,p-SINE1-r107,p-SINE1-r108,p-SINE1-r109,p-SINE1-r111,p-SINE1-r112,p-SINE1-r38,p-SINE1-r2,p-SINE1-r4,p-SINE1-r5,p-SINE1-r6,p-SINE1-r3,p-SINE1-r25,p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r30,p-SINE1-r34,p-SINE1-r7,p-SINE1-r29,p-SINE1-r32
22783		Chen,J., Chen,J., Chen,J., Tang,W.H., Hong,M.M., Wang,Z.Y.	OsBP-73, a rice gene, encodes a nove	Thesis (University of Edinburgh, Dept. of Computer Science)			2002		
22784		Peng,L.T., Peng,L.T., Wang,J., Zhang,J.L., Peng,L.T.	 The functional analysis of gamma-glutamylcysteine synthetase gene in Oryza sativa	Thesis (University of Edinburgh, Dept. of Computer Science)		Institute	2003		
22786	16520319	Lu,Y.H., Ma,L.X. and Jiang,S.J.	[A universal high-throughput novel method of constructing the vectors]	Yi Chuan	28 (2)	212-218	2006		
22801	8939818	Aragon-Alcaide,L.F., Miller,T., Schwarzacher,T., Reader,S.and Moore,G.	A cereal centromeric sequence	Chromosoma	105(5)	261-268	1996		
22802	2693947	Tatsumi,H., Ogawa,Y., Murakami,S., Ishida,Y., Murakami,K., Masaki,A., Kawabe,H., Arimura,H., Nakano,E. and Motai,H.	A full length cDNA clone for the alkaline protease from Aspergillus oryzae: structural analysis and expression in Saccharomyces cerevisiae.,	Mol. Gen. Genet.	219(1-2)	33-38	1989		
22803	12872996	Park,K.C., Jeong,C.S., Song,M.T. and Kim,N.S.	A new MITE family, Pangrangja, in Gramineae species	Mol. Cells	15 (3)	373-380	2003	PANGRANGIA	Pangrangia
22805	16233720	Matsumura,K., Hisada,H., Obata,H., Hata,Y., Kawato,A., Abe,Y. and Akita,O.	A Novel Amine Oxidase-Encoding Gene from Aspergillus oryzae	J. Biosci. Bioeng.	98(5)	359-365	2004		
22807		Komori,T. and Nitta,N.	A simple method to control the seed purity of japonica hybrid rice varieties using PCR-based markers	Plant Breeding	123(6)	549-553	2004	_,RF1,[CMS-BO]	atp6, N-atp6, B-ATP6, B-atp6, atp6-1,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,[cms-bo]
22808	15056900	Jin,F.J., Maruyama,J., Juvvadi,P.R., Arioka,M. and Kitamoto,K.	Adenine Auxotrophic Mutants of Aspergillus oryzae: Development of a Novel Transformation System with Triple Auxotrophic Hosts	Biosci. Biotechnol. Biochem.	68(3)	656-662	2004		
22809	1495393	Tang,C.M., Cohen,J. and Holden,D.W.	An Aspergillus fumigatus alkaline protease mutant constructed by gene disruption is deficient in extracellular elastase activity	Mol. Microbiol.	6(12)	1663-1671	1992		
22818	16040802	Lee,H.R., Zhang,W., Langdon,T., Jin,W., Yan,H., Cheng,Z. and Jiang,J.	Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species	Proc. Natl. Acad. Sci. U.S.A.	102 (33)	11793-11798	2005	CENH3	CENH3, CenH3
22821	15757176	Yoshida,S., Suzuki,F., Tsukiboshi,T. and Shinohara,H.	Cloning and characterization of a gene rpg1 encoding polygalacturonase of Rhizopus oryzae	Mycol. Res.	108(PT 12)	1407-1414	2004		
22824	16306700	Watanabe,M., Sumida,N., Yanai,K. and Murakami,T.	Cloning and Characterization of Saponin Hydrolases from Aspergillus oryzae and Eupenicillium brefeldianum	Biosci. Biotechnol. Biochem.	69(11)	2178-2185	2005		
22825	15502348	Kaya,M., Matsumura,M., Higashida,K., Hata,Y.,  Kawato,A., Abe,Y., Akita,O., Takaya,N. and Shoun, H.	Cloning and Enhanced Expression of the Cytochrome P450nor Gene (nicA; CYP55A5) Encoding Nitric Oxide Reductase from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	68(10)	2040-2049	2004		
22826	16233832	Hisada,H., Hata,Y., Kawato,A., Abe,Y. and Akita,O.	Cloning and Expression Analysis of Two Catalase Genes from Aspergillus oryzae	J. Biosci. Bioeng.	99(6)	562-568	2005		
22828	15158278	Fu,Y., Lee,H., Collins,M., Tsai,H.F., Spellberg,B., Edwards,J.E.Jr, Kwon-Chung,K.J. and Ibrahim,A.S.	Cloning and functional characterization of the Rhizopus oryzae high affinity iron permease (rFTR1) gene	FEMS Microbiol. Lett.	235 (1)	169-176	2004		
22829	7584030	Ashikawa,I., Kurata,N., Nagamura,Y. and Minobe,Y.	Cloning and mapping of telomere-associated sequences from rice	DNA Res.	1	67-76	1994		
22830		Tada,S., Iimura,Y., Gomi,K., Takahashi,K., Hara,S. and Yoshizawa,K.	Cloning and nucleotide sequence of the genomic Taka-amylase A gene of Aspergillus oryzae	Agric. Biol. Chem.	53(3)	593-599	1989		
22831	12596854	Kato,Y., Kato,Y., Furukawa,K. and Hara,S.	Cloning and Nucleotide Sequence of the Glutamate Decarboxylase-encoding Gene gadA from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	66(12)	2600-2605	2002		
22832	12723619	Matsuo,I., Kim,S., Yamamoto,Y., Ajisaka,K., Maruyama,J., Nakajima,H. and Kitamoto,K.	Cloning and Overexpression of beta-N-Acetylglucosaminidase Encoding Gene nagA from Aspergillus oryzae and Enzyme-catalyzed Synthesis of Human Milk Oligosaccharid	Biosci. Biotechnol. Biochem.	67(3)	646-650	2003		
22835	9765593	Beer,H.D., McCarthy,J.E., Bornscheuer,U.T. and Schmid,R.D.	Cloning, expression, characterization and role of the leader sequence of a lipase from Rhizopus oryzae	Biochim. Biophys. Acta	1399 (2-3)	173-180	1998		
22836	14716498	Kihara,J., Moriwaki,A., Ueno,M., Tokunaga,T., Arase,S., Honda,Y.	Cloning, functional analysis and expression of a scytalone dehydratase gene (SCD1) involved in melanin biosynthesis of the phytopathogenic fungus Bipolaris oryzae	Curr. Genet.	45(4)	197-204	2004		
22837	15138697	Kihara,J., Moriwaki,A., Matsuo,N., Arase,S., Honda,Y.	Cloning, functional characterization, and near-ultraviolet radiation-enhanced expression of a photolyase gene (PHR1) from the phytopathogenic fungus Bipolaris oryzae	Curr. Genet.	46(1)	37-46	2004		
22838	12869764	The Rice Full-Length cDNA Consortium	Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice	Science	301(5631)	376-379	2003	EXPA31	OsEXPA31
22839	15689432	Seif,E., Leigh,J., Liu,Y., Roewer,I., Forget,L. and Lang,B.F.	Comparative mitochondrial genomics in zygomycetes: bacteria-like RNase P RNAs, mobile elements and a close source of the group I intron invasion in angiosperms	Nucleic Acids Res.	33 (2)	734-744	2005		
22840		Toda,T., Mghalu,J.M., Pryatomojo,A. and Hyakumachi,M.	Comparison of sequences for the internal transcribed spacer region in Rhizoctonia solani AG 1-ID and other subgroups of AG 1	J. Gen. Plant Pathol.	70(5)	270-272	2004		
22842	15587062	Bills,G.F., Platas,G. and Gams,W.	Conspecificity of the cerulenin and helvolic acid producing 'Cephalosporium caerulens', and the hypocrealean fungus Sarocladium oryzae	Mycol. Res.	108 (PT 11)	1291-1300	2004		
22844	15845386	Seshime,Y., Juvvadi,P.R., Fujii,I. and Kitamoto,K.	Discovery of a novel superfamily of type III polyketide synthases in Aspergillus oryzae	Biochem. Biophys. Res. Commun.	331(1)	253-260	2005		
22845	15302836	Mizutani,O., Nojima,A., Yamamoto,M., Furukawa,K., Fujioka,T., Yamagata,Y., Abe,K. and Nakajima,T.	Disordered Cell Integrity Signaling Caused by Disruption of the kexB Gene in Aspergillus oryzae	Eukaryotic Cell	3(4)	1036-1048	2004		
22851		Shirasawa,K., Kishitani,S. and Nishio,T.	Dot-Blot Analysis for Identification of japonica Rice Cultivars and Genotyping of Recombinant Inbred Lines.	Breeding Science	55(2)	187-192	2005		
22852	15716045	Kobayashi,S., Noro,Y., Nagano,H., Yoshida,K.T., Takano-Shimizu,T., Kishima,Y. and Sano,Y.	Evidence for an evolutionary force that prevents epigenetic silencing between tail-to-tail rice genes with a short spacer	Gene	346	231-240	2005	EPSPS,RPS20	EPSPs,rps20
22855		Hihara,Y., Shoda,K., Liu,Q., Hara,C., Umeda,M., Toriyama,K. and Uchiyama,H.	Expressed sequence tags in developing anthers of rice (Oryza sativa L.)	Plant Biotechnol.	14(1)	71-75	1997	_,_,_,_,_,_,_,_,_,_,_,_,_,_,BGAL7,_,_,_,_,_,EIF1A2,_,_,_,RPL7,_,_,_,_,_,_,RFA1,TIP1;1,HSP58.7,RPS5,RPL19,RPL26,RSUS2,_,EIF4A1,OC1,_,_,_,_,GRP3,TID1,RSUS1,SODA1,_,_,CHS,NIP1;1,_,LRT2,OSC6,_,PSBO	OsCKA2-2, CKA2-2,,,,,,,,,,,,,,OsBgal7, OsBGal7, CARSR12,,,,,,OseIF1A-2,DHFR,OsRab11D1, OsRab11, Rab11, ric2,,rpl7,,,,,,,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,OsTIP1;1, TIP1-1, rTIP1,OsHsp58.7, OsHSP58.7, OsISC25,RPS5A,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,RPL24b, OsRPL26, OsRPL24b,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,OsSK13/OsGSK6, OsSK13, OsGSK6, SK13, GSK6,eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1,YK704, Os60sP0,Dhr6, OsUBC5b, OsUBC16, UBC16,,,OsGRP3, RTP, RBP-152 ,OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, ,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsWD40-122, OsRACK1B, RACK1B,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,psbB,PsbO, psbO
22856	14717841	Kihara,J., Moriwaki,A., Ito,M., Arase,S. and Honda,Y.	Expression of THR1, a 1,3,8-trihydroxynaphthalene reductase gene involved in melanin biosynthesis in the phytopathogenic fungus Bipolaris oryzae, is enhanced by near-ultraviolet radiation	Pigment Cell Res.	17	15-23	2004		
22858	15466528	Akazawa,S., Karino,T., Yoshida,N., Katsuragi,T. and Tani,Y.	Functional Analysis of Fructosyl-Amino Acid Oxidases of Aspergillus oryzae	Appl. Environ. Microbiol.	70(10)	5882-5890	2004		
22859	1339327	Hata,Y., Kitamoto,K., Gomi,K., Kumagai,C. and Tamura,G.	Functional elements of the promoter region of the Aspergillus oryzae glaA gene encoding glucoamylase	Curr. Genet.	22(2)	85-91	1992		
22860		Fei,X.W., Deng,X.D., Wang,Y.S., Liu,L.S. and Xu,Z.F.	Genetic Analysis and molecular characterization of the GTP binding protein alpha-subunit gene from rice dwarf mutatant dwarf 69	Acta scientiarum naturalium, Universitatis Sunyatseni (Zhongshan Da Xue Xue Bao Zi Ran Ke Xue Ban)	43 (1)	70-74	2004	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
22861	15278242	Saito,K., Saito,A., Ohnishi,M. and Oda,Y.	Genetic diversity in Rhizopus oryzae strains as revealed by the sequence of lactate dehydrogenase genes	Arch. Microbiol.	182(1)	30-36	2004		
22862	15978416	Nagao,K., Ota,T., Tanikawa,A., Takae,Y., Mori,T., Udagawa,S. and Nishikawa,T.	Genetic identification and detection of human pathogenic Rhizopus species, a major mucormycosis agent, by multiplex PCR based on internal transcribed spacer region of rRNA gene	J. Dermatol. Sci.	39 (1)	23-31	2005		
22863	16372010	Machida,M. et al.	Genome sequencing and analysis of Aspergillus oryzae	Nature	438(7071)	1157-1161	2005		
22865	9872797	Watson,A.J., Fuller,L.J., Jeenes,D.J. and Archer,D.B.	Homologues of aflatoxin biosynthesis genes and sequence of aflR in Aspergillus oryzae and Aspergillus sojae	Appl. Environ. Microbiol.	65(1)	307-310	1999		
22869	15336395	Moriwaki,A., Kihara,J., Kobayashi,T., Tokunaga,T., Arase,S. and Honda,Y.	Insertional mutagenesis and characterization of a polyketide synthase gene (PKS1) required for melanin biosynthesis in Bipolaris oryzae	FEMS Microbiol. Lett.	238(1)	1-8	2004		
22875	15388959	Ishida,H., Hata,Y., Kawato,A., Abe,Y. and Kashiwagi,Y.	Isolation of a Novel Promoter for Efficient Protein Production in Aspergillus oryzae	Biosci. Biotechnol. Biochem.	68(9)	1849-1857	2004		
22880	12092808	Ishida,H., Moritani,T., Hata,Y., Kawato,A., Suginami,K., Abe,Y.and Imayasu,S.	Molecular Cloning and Overexpression of fleA Gene Encoding a Fucose-specific Lectin of Aspergillus oryzae	Biosci. Biotechnol. Biochem.	66(5)	1002-1008	2002		
22881	11999400	Kimura,T., Suzuki,H., Furuhashi,H., Aburatani,T., Morimoto,K., Sakka,K. and Ohmiya,K.	Molecular Cloning, Characterization, and Expression Analysis of the xynF3 Gene from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	66(2)	285-292	2002		
22882	11210150	Kimura,T., Suzuki,H., Furuhashi,H., Aburatani,T., Morimoto,K., Karita,S., Sakka,K. and Ohmiya,K.	Molecular Cloning, Overexpression, and Purification of a Major Xylanase from Aspergillus oryzae	Biosci. Biotechnol. Biochem.	64(12)	2734-2738	2000		
22883	15555943	Masuo,N., Ito,K., Yoshimune,K., Hoshino,M., Matsushima,K., Koyama,Y. and Moriguchi,M.	Molecular cloning, overexpression, and purification of Micrococcus luteus K-3-type glutaminase from Aspergillus oryzae RIB40	Protein Expr. Purif.	38 (2)	272-278	2004		
22885	15951485	Huang,C.Y., Gruenheit,N., Ahmadinejad,N., Timmis,J.N. and Martin,W.	Mutational decay and age of chloroplast and mitochondrial genomes transferred recently to angiosperm nuclear chromosomes.	Plant Physiol.	138(3)	1723-1733	2005		
22886	15710378	Sayari,A., Frikha,F., Miled,N., Mtibaa,H., Ben Ali,Y., Verger,R. and Gargouri,Y.	N-terminal peptide of Rhizopus oryzae lipase is important for its catalytic properties	FEBS Lett.	579 (5)	976-982	2005		
22890	2552410	Kadowaki,K., Suzuki,T., Kazama,S., Oh-fuchi,T. and Sakamoto,W.	Nucleotide sequence of the cytochrome oxidase subunit I gene from rice mitochondria	Nucleic Acids Res.	17(18)	7519	1989	_	coxI, COX1, cox1-1, cox1
22891	2138730	Kadowaki,K.I., Kazama,S. and Suzuki,T.	Nucleotide sequence of the F1-ATPase alpha subunit gene from rice mitochondria.	Nucleic Acids Res.	18(5)	1302	1990	_	atpA, RMtATPa 
22892	15802503	Couch,B.C., Fudal,I., Lebrun,M.H., Tharreau,D., Valent,B., van Kim,P., Notteghem,J.L. and Kohn,L.M.	Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice	Genetics	170 (2)	613-630	2005		
22897	15650813	Nishikawa,T., Vaughan,D.A. and Kadowaki,K.	Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes	Theor. Appl. Genet.	110(4)	696-705	2005		
22899	15046309	Haugland,R.A., Varma,M., Wymer,L.J. and Vesper,S.J.	Quantitative PCR analysis of selected Aspergillus, Penicillium and Paecilomyces species	Syst. Appl. Microbiol	27 (2)	198-210	2004		
22900	15488154	Kunii,M., Kanda,M., Nagano,H., Uyeda,I., Kishima,Y. and Sano,Y.	Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome: implications for integration and evolution	BMC Genomics.	5	80	2004		
22904	8752869	Ito, Y., Nakazono, M., Kadowaki, K., Tsutsumi, N .and Hirai, A.	RNA editing of transcripts of the gene for apocytochrome b (cob) in rice mitochondria	Genes Genet. Syst.	71(2)	85-89	1996	_	cob, cob-1, cob-like
22905	2326174	Kaleikau,E.K., Andre,C.P., Doshi,B. and Walbot,V.	Sequence of the rice mitochondrial gene for apocytochrome b	Nucleic Acids Res.	18(2)	372	1990	_	cob, cob-1, cob-like
22907	15616142	Nagaki,K., Neumann,P., Zhang,D., Ouyang,S., Buell,C.R., Cheng,Z. and Jiang,J.	Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice	Mol. Biol. Evol.	22 (4)	845-855	2005		
22908	12702266	Scorzetti,G., Fell,J.W., Fonseca,A. and Statzell-Tallman,A.	Systematics of basidiomycetous yeasts: a comparison of large subunit D1/D2 and internal transcribed spacer rDNA regions	FEMS Yeast Res.	2 (4)	495-517	2002		
22913	1718614	Suzuki,T., Kazama,S., Hirai,A., Akihama,T. and Kadowaki,K.	The rice mitochondrial nad3 gene has an extended reading frame at its 5' end: nucleotide sequence analysis of rice trnS, nad3, and rps12 genes	Curr. Genet.	20 (4)	331-337	1991	_,RPS12,_,NAD3	trnS(GCT), trnS,rps12,coxI, COX1, cox1-1, cox1,nad3
22920		James,D. and Schmidt, A.-M.	Use of an intron region of a chloroplast tRNA gene (trnL) as a target for PCR identification of specific food crops including sources of potential allergens	Food Res. Intern.	37(4)	395-402	2004	_	trnL(UAA), trnL, trnL-UAA
22921	16094432	Mian,M.A., Saha,M.C., Hopkins,A.A. and Wang,Z.Y.	Use of tall fescue EST-SSR markers in phylogenetic analysis of cool-season forage grasses	Genome	48 (4)	637-647	2005		
22922	16774645	Albar,L., Bangratz-Reyser,M., Hebrard,E., Ndjiondjop,M.N., Jones,M. and Ghesquiere,A.	Mutations in the eIF(iso)4G translation initiation factor confer high resistance of rice to Rice yellow mottle virus.	Plant J.	47(3)	417-426	2006	RYMV1	Rymv1, eIF(iso)4G
22923	16926158	Bashir,K., Inoue,H., Nagasaka,S., Takahashi,M., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Cloning and characterization of deoxymugineic Acid synthase genes from graminaceous plants.	J. Biol. Chem.	281(43)	32395-32402	2006	DMAS1	OsDMAS1
22924	16436304	Cao,Y., Song,F., Goodman,R.M. and Zheng,Z.	Molecular characterization of four rice genes encoding ethylene-responsive transcriptional factors and their expressions in response to biotic and abiotic stress.	J. Plant Physiol.	163(11)	1167-1178	2006	ERF72,ERF3	OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
22925	16977424	Chae,M.J., Lee,J.S., Nam,M.H., Cho,K., Hong,J.Y., Yi,S.A., Suh,S.C. and Yoon,I.S.	A rice dehydration-inducible SNF1-related protein kinase 2 phosphorylates an abscisic acid responsive element-binding factor and associates with ABA signaling.	Plant Mol. Biol.	63(2)	151-169	2007	SAPK6,ABI5	OsSAPK6, OSRK1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
22926	0	Chang,P.-F.L., Jinn,T.-L., Huang,W.-K., Chen,Y., Chang,H.-M. and Wang,C.-W.	Induction of a cDNA clone from rice encoding a class II small heat shock protein by heat stress, mechanical injury, and salicylic acid	Plant Sci.	172(1)	64-75	2007	HSP16.9A,HSP17.7,HSP16.9B,HSP18.0-CII,HSP17.9A,HSP16.9C,HSP18.0,HSP17.3	Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsHsp17.3, OsHSP17.3, Oshsp17.3 
22927	17400897	Chen,R., Zhao,X., Shao,Z., Wei,Z., Wang,Y., Zhu,L., Zhao,J. and Sun,M.	Rice UDP-Glucose Pyrophosphorylase1 Is Essential for Pollen Callose Deposition and Its Cosuppression Results in a New Type of Thermosensitive Genic Male Sterility	Plant Cell	19(3)	847-861	2007	UGP2,UGP1	Ugp2, OsUgp2,Ugp1, OsUgp1, UGP2, UGP3
22928	0	Chen,R., Zhao,X., Shao,Z., Zhu,L. and He,G.	Multiple isoforms of UDP-glucose pyrophosphorylase in rice	Physiol. Plantarum	129(4)	725-736	2007	UGP1,UGP2	Ugp1, OsUgp1, UGP2, UGP3,Ugp2, OsUgp2
22930	17388894	Duan,G.L., Zhou,Y., Tong,Y.P., Mukhopadhyay,R., Rosen,B.P. and Zhu,Y.G.	A CDC25 homologue from rice functions as an arsenate reductase.	New Phytol.	174(2)	311-321	2007	ACR2.2,ACR2.1	CDC25.2, OsACR2.2, OsStr21, STR21,CDC25.1, OsACR2.1, OsStr20, STR20
22932	17163879	Furukawa,T., Maekawa,M., Oki,T., Suda,I., Iida,S., Shimada,H., Takamure,I. and Kadowaki,K.I.	The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp.	Plant J.	49(1)	91-102	2007	RC,RD	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,Rd, DFR, OsDFR, OS-DFR
22934	16990291	Han,M.J., Jung,K.H., Yi,G., Lee,D.Y. and An,G.	Rice Immature Pollen 1 (RIP1) is a Regulator of Late Pollen Development.	Plant Cell Physiol.	47(11)	1457-1472	2006	_	OsWD40-193, RIP1
22936	16720649	Hayakawa,T., Kudo,T., Ito,T., Takahashi,N. and Yamaya,T.	ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei.	Plant Cell Physiol.	47(7)	891-904	2006	ACR1,ACR6,ACR7,ACR8,ACR9,ACR5	OsACR1,OsACR6,OsACR7,OsACR8,OsACR9,OsACR5
22937	17293362	Hirose,N., Makita,N., Kojima,M., Kamada-Nobusada,T. and Sakakibara,H.	Overexpression of a type-a response regulator alters rice morphology and cytokinin metabolism.	Plant Cell Physiol.	48(3)	523-539	2007	RR12,WRKY71,CKX5,RR3,GA2OX3,RR10,RR8,RR2,RR11,RR7,GN1A,GA20OX4,CKX11,CKX4,RR13,RR4,RR1,RR6,TMK,RR5	OsRR12, Rra11, OsRR8, RR8, OsRRA11,OsWRKY71, WRKY-71,OsCKX5, ckx5,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsRR10, Rra2, OsRRA2, RR2,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsRR11, Rra8, OsRRA8, RR8,rr7, OsRR7, Rra5, OsRRA5,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsGA20ox4, ga20ox4,OsCKX11,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsRR13, Rra12, OsRR12, OsRRA12, RR12,rr4, OsRR4, Rra3, OsRRA3,rr1, OsRR1, Rra9, OsRRA9,OsRR6, rr6, Rra6, OsRRA6,OsTMK,rr5, OsRR5, Rra4, OsRRA4
22939	16919402	Ito,Y. and Kurata,N.	Identification and characterization of cytokinin-signalling gene families in rice.	Gene	382	57-65	2006	RR7,HK4,RR22,RR23,RR25,RR21,HK5,RR26,RR12,CKT1,HK2,RR8,RR24,CRL4,RR9,AHP1,RR5,RR6,RR3,RR4,RR2,EF1,AHP2,RR10,RR1,RR13,RR11,HK3	rr7, OsRR7, Rra5, OsRRA5,OHK4, HK, OsHK4, Crl1b, Ohk4,OsRR22, Rrb4, Orr2, OsRR20, OsRRB4,OsRR23, Rrb5, Orr3, OsRR18, OsRRB5,OsRR25, Rrb3, Orr5, OsRR21, OsRRB3,OsRR21, Rrb1, Orr1, OsRR19, OsRRB1, ORR1,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OsRR26, Rrb6, Orr6, OsRR16, OsRRB6,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OHK1, HK, OsHK2, Ohk1,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2,rr5, OsRR5, Rra4, OsRRA4,OsRR6, rr6, Rra6, OsRRA6,OSRR3, OsRR3, rr3, Rra7, OsRRA7,rr4, OsRR4, Rra3, OsRRA3,rr2, Osrr2, OsRR2, Rra10, OsRRA10,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3,OsRR10, Rra2, OsRRA2, RR2,rr1, OsRR1, Rra9, OsRRA9,OsRR13, Rra12, OsRR12, OsRRA12, RR12,OsRR11, Rra8, OsRRA8, RR8,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b
22941	16906405	Janni,M., M., Roberti,S., Capodicasa,C. and D'Ovidio,R.	Characterization of expressed Pgip genes in rice and wheat reveals similar extent of sequence variation to dicot PGIPs and identifies an active PGIP lacking an entire LRR repeat.	Theor. Appl. Genet.	113(7)	1233-1245	2006	PGIP4,PGIP3,PGIP2,PGIP1	Ospgip4, pgip4, OsPGIP4,Ospgip3, pgip3, OsPGIP3,Ospgip2, pgip2, OsPGIP2,Ospgip1, pgip1, OsPGIP1
22943	17376611	Kang,S.G., Jeong,H.K., Lee,E. and Natarajan,S.	Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.).	Gene	393(1-2)	53-61	2007		
22944	17218330	Katou,S., Kuroda,K., Seo,S., Yanagawa,Y., Tsuge,T., Yamazaki,M., Miyao,A., Hirochika,H. and Ohashi,Y.	A Calmodulin-Binding Mitogen-Activated Protein Kinase Phosphatase is Induced by Wounding and Regulates the Activities of Stress-Related Mitogen-Activated Protein Kinases in Rice.	Plant Cell Physiol.	48(2)	332-344	2007	_,MPK6,MPK3,GSN1,_,_,_	OsIBR5, IBR5, OsPP85,OsMPK6,OsMPK3,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsPHS1a, OsPP3,OsDsPTP1, OsPP6,OsPHS1b, OsPP4, OsSTA14
22945	0	Kim,J.H., Yang,D.H., Kim,J.S., Baek,M.H., Park,Y.M., Wi,S.G., Cho,J.Y. and Chung,B.Y.	Cloning, characterization, and expression of two cDNA clones for a rice ferulate-5-hydroxylase gene, a cytochrome P450-dependent monooxygenase	J. Plant Biol.	49(3)	200-204	2006	_,_	OsF5HL2, F5HL2, CYP84A6, OsCYP84A6,OsF5HL, F5HL, CYP84A7 
22946	17148693	Kubota,Y., Miyao,A., Hirochika,H., Tozawa,Y., Yasuda,H., Tsunoyama,Y., Niwa,Y., Imamura,S., Shirai,M. and Asayama,M.	Two Novel Nuclear Genes, OsSIG5 and OsSIG6, Encoding Potential Plastid Sigma Factors of RNA Polymerase in Rice: Tissue-Specific and Light-Responsive Gene Expression.	Plant Cell Physiol.	48(1)	186-192	2007	SIG3,SIG5,SIG6	OsSIG3,OsSIG5, OsSig5, Os Sig5,OsSIG6, OsSig6
22949	0	Lin,R., Zhao,W., Meng,X., Wang,M. and Peng,Y.	Rice gene OsNAC19 encodes a novel NAC-domain transcription factor and responds to infection by Magnaporthe grisea	Plant Sci.	172(1)	120-130	2007	NAC4,NAC3,_,NAC5	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009
22950	17216230	Lin,Z., Griffith,M.E., Li,X., Zhu,Z., Tan,L., Fu,Y., Zhang,W., Wang,X., Xie,D. and Sun,C.	Origin of seed shattering in rice (Oryza sativa L.).	Planta.	226(1)	11-20	2007	SH4	sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
22953	17364810	Mahmood,T., Hyder,M.Z. and Naqvi,S.M.S.	Cloning and sequence analysis of germin-like protein gene 2 promoter from Oryza sativa L. ssp. indica	DNA Seq.	18(1)	26-32	2007	GLP8-7	OsGLP8-7, GER6, OsRGLP2, RGLP2
22955	17022177	Mei,C., Qi,M., Sheng,G. and Yang,Y.	Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection.	Mol. Plant Microbe Interact.	19(10)	1127-1137	2006	PR10A,AOS2	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsAOS2, CYP74A2, OsAOS, OsAOS1
22956	17327258	Mimida,N., Kitamoto,H., Osakabe,K., Nakashima,M., Ito,Y., Heyer,W.D., Toki,S. and Ichikawa,H.	Two Alternatively Spliced Transcripts Generated from OsMUS81, a Rice Homolog of Yeast MUS81, Are Up-Regulated by DNA-Damaging Treatments.	Plant Cell Physiol.	48(4)	648-654	2007	RAD54,_	OsRAD54, OsRad54,OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4
22958	0	Niu,Y., Chen,K., Wang,J., Liu,X., Qin,H., Zhang,A. and Wang,D.	Molecular and Functional Characterization of Sphingosine-1-Phosphate Lyase Homolog from Higher Plants	J. Integr. Plant Biol.	49(3)	323-335	2007	_	OsSPL, OsSPL1
22961	16956633	Peters,R.J.	Uncovering the complex metabolic network underlying diterpenoid phytoalexin biosynthesis in rice and other cereal crop plants.	Phytochemistry	67(21)	2307-2317	2006	KSL10,KS4,KS8,KS7,KS1	OsKSL10, KS10, OsKS10, OsTPS33,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26
22965	17205969	Saika,H., Okamoto,M., Miyoshi,K., Kushiro,T., Shinoda,S., Jikumaru,Y., Fujimoto,M., Arikawa,T., Takahashi,H., Ando,M., Arimura,S., Miyao,A., Hirochika,H., Kamiya,Y., Tsutsumi,N., Nambara,E. and Nakazono,M.	Ethylene Promotes Submergence-Induced Expression of OsABA8ox1, a Gene that Encodes ABA 8'-Hydroxylase in Rice.	Plant Cell Physiol.	48(2)	287-298	2007	NCED2,ABA1,ABA8OX2,ABA8OX3,ABA8OX1,NCED3	OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2
22966	16369540	Sakamoto,T., Morinaka,Y., Ohnishi,T., Sunohara,H., Fujioka,S., Ueguchi-Tanaka,M., Mizutani,M., Sakata,K., Takatsuto,S., Yoshida,S., Tanaka,H., Kitano,H. and Matsuoka,M.	Erect leaves caused by brassinosteroid deficiency increase biomass production and grain yield in rice.	Nat. Biotechnol.	24(1)	105-109	2005	DWARF4,D11,DWARF4L,BRD1,CPD1	OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsDWARF4L,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsCPD1, CYP90A3, CYP90A3/OsCPD1
22967	17216479	Shi,Z., Wang,J., Wan,X., Shen,G., Wang,X. and Zhang,J.	Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit.	Planta.	226(1)	99-108	2007	SHL4	shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2
22969	17082902	Su,W., Ma,H., Liu,C., Wu,J. and Yang,J.	Identification and characterization of two rice autophagy associated genes, OsAtg8 and OsAtg4.	Mol. Biol. Rep.	33(4)	273-278	2006	ATG4,ATG8	Atg4, OsAtg4, APG4, Atg4b, OsATG4b ,Atg8, OsAtg8, APG8, OsATG8a, Atg8a
22970	17056620	Suzaki,T., Toriba,T., Fujimoto,M., Tsutsumi,N., Kitano,H. and Hirano,H.Y.	Conservation and Diversification of Meristem Maintenance Mechanism in Oryza sativa: Function of the FLORAL ORGAN NUMBER2 Gene.	Plant Cell Physiol.	47(12)	1591-1602	2006	FON2,FON1	fon2, FON4, OsFON4, FON2/FON4, TG1,OsFON1, fon1, OsRLCK219, RLCK219
22973	16971692	Ueda,M., Fujimoto,M., Arimura,S., Tsutsumi,N. and Kadowaki,K.	Evidence for Transit Peptide Acquisition through Duplication and Subsequent Frameshift Mutation of a Preexisting Protein Gene in Rice.	Mol. Biol. Evol.	23(12)	2405-2412	2006	_,_,_,_	ppr564, PPR564,mt rpl13, mt RPL13,orf160, ORF160,cp rpl13, cp RPL13, WLP1, RPL13
22975	17172358	Wang,Y.S., Pi,L.Y., Chen,X., Chakrabarty,P.K., Jiang,J., A.L., Liu,G.Z., Li,L., Benny,U., Oard,J., Ronald,P.C. and Song,W.Y.	Rice XA21 Binding Protein 3 Is a Ubiquitin Ligase Required for Full Xa21-Mediated Disease Resistance	Plant Cell	18(12)	3635-3646	2006	_,_,_,_,_,_,XB3,XA21	XBOS32,XBOS33,XBOS34,XBOS35,XBOS36,XBOS31, OsRFPHC-7,Xb3,Xa21*, Xa21, OsXA21
22976	16896530	Wu,C., Zhou,S., Zhang,Q., Zhao,W. and Peng,Y.	Molecular cloning and differential expression of an gamma-aminobutyrate transaminase gene, OsGABA-T, in rice (Oryza sativa) leaves infected with blast fungus.	J. Plant Res.	119(6)	663-669	2006	_,_	Osl2,OsGABA-T, GABA-T
22977	16932879	Xiang,Y., Cao,Y., Xu,C., Li,X. and Wang,S.	Xa3, conferring resistance for rice bacterial blight and encoding a receptor kinase-like protein, is the same as Xa26.	Theor. Appl. Genet.	113(7)	1347-1355	2006	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
22979	0	Yang,D.H., Chung,B.Y., Kim,J.S., Kim,J.H., Yun,P.Y., Lee,Y.K., Lim,Y.P. and Lee,M.C.	cDNA Cloning and Sequence Analysis of the Rice Cinnamate-4-Hydroxylase Gene, a Cytochrome P450-Dependent Monooxygenase Involved in the General Phenylpropanoid Pathway	J. Plant Biol.	48(3)	311-318	2005	_	C4H2, OsC4H, OsC4HL, C4H
22980	17022939	Yang,S.-H. and Choi,D.	Characterization of genes encoding ABA 8'-hydroxylase in ethylene-induced stem growth of deepwater rice (Oryza sativa L.)	Biochem. Biophys. Res. Commun.	350(3)	685-690	2006	ABA8OX1,ABA8OX2	OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2
22981	17056618	Yoshida,K. and Komae,K.	A Rice Family 9 Glycoside Hydrolase Isozyme with Broad Substrate Specificity for Hemicelluloses in Type II Cell Walls.	Plant Cell Physiol.	47(11)	1541-1554	2006	CEL9A	OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A 
22982	17056619	Yoshida,K., Imaizumi,N., Kaneko,S., Kawagoe,Y., Tagiri,A., Tanaka,H., Nishitani,K. and Komae,K.	Carbohydrate-Binding Module of a Rice Endo-{beta}-1,4-glycanase, OsCel9A, Expressed in Auxin-Induced Lateral Root Primordia, is Post-Translationally Truncated.	Plant Cell Physiol.	47(11)	1555-1571	2006	CEL9D,CEL9A	OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A 
22983	16915519	Zhang,H., Li,J., Yoo,J.H., Yoo,S.C., Cho,S.H., Koh,H.J., Seo,H.S. and Paek,N.C.	Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development.	Plant Mol. Biol.	62(3)	325-337	2006	CHL1,CHL9	chl1, chl1(ch1), ch1,chl9
22984	17073304	Zhou,B., Qu,S., Liu,G., Dolan,M., Sakai,H., Lu,G., Bellizzi,M. and Wang,G.L.	The eight amino-acid differences within three leucine-rich repeats between Pi2 and Piz-t resistance proteins determine the resistance specificity to Magnaporthe grisea.	Mol. Plant Microbe Interact.	19(11)	1216-1228	2006	PIZ5,PI9,PIZT,PIZ	Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
22985	16463105	Zhou,H.L., He,S.J., Cao,Y.R., Chen,T., Du,B.X., Chu,C.C., Zhang,J.S. and Chen,S.Y.	OsGLU1, a putative membrane-bound endo-1,4-beta-D-glucanase from rice, affects plant internode elongation.	Plant Mol. Biol.	60(1)	137-151	2006	CEL9D,GLU	OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsGLU
30000		H. KUROSITA, J-I. ITOH and Y. NAGATO	FLATTENED SHOOT MERISTEM is required for shoot meristem maintenance in rice.	RGN	22	52-53	2005	FSM	fsm
30001		M. ABE, J-I. ITOH and Y. NAGATO	wavy leaf 1 causes depressed growth of above- and under-ground organs in rice.	RGN	22	50-51	2005	WAF1	waf1, waf1-1, waf1-2, HEN1
30020	10527416	Hwang YS, Thomas BR, Rodriguez RL.	Differential expression of rice alpha-amylase genes during seedling development under anoxia.	Plant Mol. Biol.	40(6)	911-920	1999	AMY1A,AMY3D,AMY2A,AMY1B,AMY3B,AMY3C,AMY1C,AMY3A,AMY3E	Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 
30023		A. YOSHIMURA, N. TAKANO-KAI and C. ANNO	Linkage mapping of genes for short panicle and awn in rice.	RGN	21	17-19	2004	AN6,SP2(T)	An6, An6(t), An6*,sp2(t), sp2
30025		A. Yoshimura and Y. Nagato	A. Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups.	RGN	22	6-8	2005	APD1,DBS1,OVC,CRL1,EF1,PLA2	apd1, apd1*,dbs1,Ovc, Ovc(t),crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,pla2, pla2(pla2-1, pla2-2), plt2, LHD2
30027	9869417	Kumpatla SP, Hall TC.	Longevity of 5-azacytidine-mediated gene expression and re-establishment of silencing in transgenic rice.	Plant Mol. Biol.	38(6)	1113-1122	1998	BAR	bar
30028	16927205	Pan,G., Zhang,X., Liu,K., Zhang,J., Wu,X., Zhu,J. and Tu,J.	Map-based cloning of a novel rice cytochrome P450 gene CYP81A6 that confers resistance to two different classes of herbicides.	Plant Mol. Biol.	61(6)	933-943	2006	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6
30029	15907692	Jung YH, Lee JH, Agrawal GK, Rakwal R, Kim JA, Shim JK, Lee SK, Jeon JS, Koh HJ, Lee YH, Iwahashi H, Jwa NS.	The rice (Oryza sativa) blast lesion mimic mutant, blm, may confer resistance to blast pathogens by triggering multiple defense-associated signaling pathways.	Plant Physiol. Biochem.	43(4)	397-406	2005	BLM	blm (=bl2)
30030		Sun L, Su C, Wang C, Zhai H, Wan J.	Mapping of a Major Resistance Gene to the Brown Planthopper in the Rice Cultivar Rathu Heenati	Breeding Science	55(4)	391-396	2005	BPH17	Bph17
30031	16240104	Jena KK, Jeung JU, Lee JH, Choi HC, Brar DS.	High-resolution mapping of a new brown planthopper (BPH) resistance gene, Bph18(t), and marker-assisted selection for BPH resistance in rice (Oryza sativa L.).	Theor. Appl. Genet.	112(2)	288-297	2006	BPH18	Bph18(t)
30032	16395578	Chen JW, Wang L, Pang XF, Pan QH.	Genetic analysis and fine mapping of a rice brown planthopper (Nilaparvata lugens Stal) resistance gene bph19(t).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275(4)	321-329	2006	BPH19	bph19(t)
30033	15994910	Hong Z, Ueguchi-Tanaka M, Fujioka S, Takatsuto S, Yoshida S, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M.	The Rice brassinosteroid-deficient dwarf2 mutant, defective in the rice homolog of Arabidopsis DIMINUTO/DWARF1, is rescued by the endogenously accumulated alternative bioactive brassinosteroid, dolichosterone.	Plant Cell	17(8)	2243-2254	2005	BRD2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1
30034		LIU Qiu-hua,LU Zuo-mei	Molecular mapping for bentazon suscptible lethality gene in rice cultiva Nonglin 8m	J. Nanjing Agri. Univ.	27(4)	17-19,	2004	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6
30037	9880342	Lorbiecke R, Sauter M.	Adventitious root growth and cell-cycle induction in deepwater rice	Plant Physiol.	119(1)	21-30	1999	CDC2-1,CYCA1;3,CYCB2;1,CYCB2;2,CDC2-2	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,cycA1;3, CycA1;3, CYCA1-3,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2
30038	12913143	Takahashi A, Kawasaki T, Wong HL, Suharsono U, Hirano H, Shimamoto K.	Hyperphosphorylation of a mitochondrial protein, prohibitin, is induced by calyculin A in a rice lesion-mimic mutant cdr1.	Plant Physiol.	132(4)	1861-1869	2003	CDR1,PHB1	cdr1, cdr1*,OsPHB1
30044	15159627	Day RB, Tanabe S, Koshioka M, Mitsui T, Itoh H, Ueguchi-Tanaka M, Matsuoka M, Kaku H, Shibuya N, Minami E.	Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.	Plant Mol. Biol.	54(2)	261-272	2004	CIGR1,CIGR2	OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36
30049	16574854	Keegstra K, Walton J.	Plant science. Beta-glucans--brewer's bane, dietician's delight.	Science	311(5769)	1872-1873	2006	CSLF	Csl,OsCslF
30054		Maekawa M, Takamure I, Ahmed N, Kyozuka J.	Bunketsu-waito, One of the Tillering Dwarfs, is Controlled by a Single Recessive Gene in Rice (Oryza sativa L.)	Breeding Science	55(2)	193-196	2005	D5,D4,D3	d5, dwf5,d4, dwf4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3
30058	16714407	Morinaka Y, Sakamoto T, Inukai Y, Agetsuma M, Kitano H, Ashikari M, Matsuoka M.	Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice.	Plant Physiol.	141(3)	924-931	2006	D61	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
30061	16040652	Komorisono M, Ueguchi-Tanaka M, Aichi I, Hasegawa Y, Ashikari M, Kitano H, Matsuoka M, Sazuka T.	Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling.	Plant Physiol.	138(4)	1982-1993	2005	DGL1	dgl1, dgl1-1, dgl1-2, dgl1-3
30063		Khun LH, Motomura K, Murayama S, Adaniya S, Nose A.	Trisomic Analysis of a Lateness Gene ef2 in Rice, Oryza sativa L.	Breeding Science	55(1)	35-39	2005	EF2	ef2 (=lf-1), ef2(t) (lf1), lf1, ef2
30064		Khun LH, Motomura K, Murayama S, Adaniya S, Nose A.	Linkage Analysis of a Lateness Gene ef4 in Rice, Oryza sativa L.	Breeding Science	55(2)	231-235	2005	EF4	ef4, ef4(t)
30065		Khun LH,Hiraiwa M, Sato S, Motomura K, Murayama S, Adaniya S, Nose A, Ishimine Y.	Location of New Gene for Late Heading in Rice, Oryza sativa L. Using Interchange Homozygotes	Breeding Science	54(3)	259-263	2004	EF5	ef5, ef5*
30067	15010620	Lertpiriyapong K, Sung ZR.	The elongation defective1 mutant of Arabidopsis is impaired in the gene encoding a serine-rich secreted protein.	Plant Mol. Biol.	53(4)	581-595	2003	ELD1	eld1-1, KOB1
30068		Kondou H, Ooka H, Yamada H, Satoh K, Kikuchi S, Takahara Y, Yamamoto K.	Microarray Analysis of Gene Expression at Initial Stages of Rice Seed Development	Breeding Science	56(3)	235-242	2006	ENL	enl
30069	15338279	Xu YH, Zhu YY, Zhou HC, Li Q, Sun ZX, Liu YG, Lin HX, He ZH.	Identification of a 98-kb DNA segment containing the rice Eui gene controlling uppermost internode elongation, and construction of a TAC transgene sublibrary.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(2)	149-155	2004	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
30070	16463101	Ma H, Zhang S, Ji L, Zhu H, Yang S, Fang X, Yang R.	Fine mapping and in silico isolation of the EUI1 gene controlling upper internode elongation in rice.	Plant Mol. Biol.	60(1)	87-94	2006	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
30071		M. KUSABA, S. IIDA, R. MORITA and N. NISHIMURA	Mapping of the EARLY YELLOWING 1 gene, EYE1 in rice.	RGN	21	9-10	2004	EYE1	eye1
30072	15928962	Wang GW, He YQ, Xu CG, Zhang Q.	Identification and confirmation of three neutral alleles conferring wide compatibility in inter-subspecific hybrids of rice (Oryza sativa L.) using near-isogenic lines.	Theor. Appl. Genet.	111(4)	702-710	2005	F6,S5,F5	f6, f6-Du, S5, S5-08,S5,f5, f5-Du, Sb, S24
30073	16317572	Wang GW, He YQ, Xu CG, Zhang Q.	Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.).	Theor. Appl. Genet.	112(2)	382-387	2006	F5	f5, f5-Du, Sb, S24
30074	15941402	Kang HG, Park S, Matsuoka M, An G.	White-core endosperm floury endosperm-4 in rice is generated by knockout mutations in the C-type pyruvate orthophosphate dikinase gene (OsPPDKB).	Plant J.	42(6)	901-911	2005	FLO1,FLO4	flo1, flo1-1, o,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD
30080	10394940	Washida H, Wu CY, Suzuki A, Yamanouchi U, Akihama T, Harada K, Takaiwa F.	Identification of cis-regulatory elements required for endosperm expression of the rice storage protein glutelin gene GluB-1.	Plant Mol. Biol.	40(1)	1-12	1999	GLUB1	GluB1, GluB1-A, GluB-1, OsGluB1
30081	12602898	Nishizawa Y, Saruta M, Nakazono K, Nishio Z, Soma M, Yoshida T, Nakajima E, Hibi T.	Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1.	Plant Mol. Biol.	51(1)	143-152	2003	GNS1	Gns1
30082	16770601	Tian F, Zhu Z, Zhang B, Tan L, Fu Y, Wang X, Sun CQ.	Fine mapping of a quantitative trait locus for grain number per panicle from wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	113(4)	619-629	2006	GPA7	gpa7
30086	16835766	Fujita D, Doi K, Yoshimura A, Yasui H.	Molecular mapping of a novel gene, Grh5, conferring resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice, Oryza sativa L.	Theor. Appl. Genet.	113(4)	567-573	2006	GRH5	Grh5
30087	15618434	Tsukamoto S, Morita S, Hirano E, Yokoi H, Masumura T, Tanaka K.	A novel cis-element that is responsive to oxidative stress regulates three antioxidant defense genes in rice.	Plant Physiol.	137(1)	317-327	2005	GRX,TRXH,SODCC1	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1
30088	10949377	Hoshida H, Tanaka Y, Hibino T, Hayashi Y, Tanaka A, Takabe T, Takabe T.	Enhanced tolerance to salt stress in transgenic rice that overexpresses chloroplast glutamine synthetase.	Plant Mol. Biol.	43(1)	103-111	2000	GS2	OsGS2, GLN2, RGS31
30092	17092317	Zou J, Zhang S, Zhang W, Li G, Chen Z, Zhai W, Zhao X, Pan X, Xie Q, Zhu L.	The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds.	Plant J.	48(5)	687-696	2006	_,D3,D17	OsCCD8a, OsCCD8c, CCD8a, CCD8c,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17
30093		S. Fukuoka, M.C.V. Newingham, M. Ishtiaq, T. nagamine, M. Kawase and K. Okuno	Identification and mapping of two new loci for hybrid breakdown in cultivated rice.	RGN	22	29-31	2005	HWG2,HWG1	hwg2(t),hwg1(t)
30101	16623909	Furutani I, Sukegawa S, Kyozuka J.	Genome-wide analysis of spatial and temporal gene expression in rice panicle development.	Plant J.	46(3)	503-511	2006	MOC1,LAX1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
30102	16525838	Maeng JY, Won YJ, Piao R, Cho YI, Jiang W, Chin JH, Koh HJ.	Molecular mapping of a gene 'ld(t)' controlling cleistogamy in rice.	Theor. Appl. Genet.	112(8)	1429-1433	2006	LD(T)	ld(t)
30105	15940509	Andaya CB, Tai TH.	Fine mapping of the rice low phytic acid (Lpa1) locus.	Theor. Appl. Genet.	111(3)	489-495	2005	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
30109	15448199	Ma JF, Mitani N, Nagao S, Konishi S, Tamai K, Iwashita T, Yano M.	Characterization of the silicon uptake system and molecular mapping of the silicon transporter gene in rice.	Plant Physiol.	136(2)	3284-3289	2004	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
30112		E. FRAKER, J. LI and S.R. MCCOUCH	SSR Mapping of Minute, a Major Gene for Grain Size, on Rice Chromosome 3	RGN	21	21-24	2004	MI	Mii, Mi1
30113	11713677	Akagi H, Yokozeki Y, Inagaki A, Mori K, Fujimura T.	Micron, a microsatellite-targeting transposable element in the rice genome.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	266(3)	471-480	2001	MICRON	Micron
30116	8879237	Nakazono M, Nishiwaki S, Tsutsumi N, Hirai A.	A chloroplast-derived sequence is utilized as a source of promoter sequences for the gene for subunit 9 of NADH dehydrogenase (nad9) in rice mitochondria.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	252(4)	371-378	1996	NAD9	nad9, nad9-1, CI-27kD, CI-27KD
30117	9952442	Higuchi K, Suzuki K, Nakanishi H, Yamaguchi H, Nishizawa NK, Mori S.	Cloning of nicotianamine synthase genes, novel genes involved in the biosynthesis of phytosiderophores.	Plant Physiol.	119(2)	471-480	1999	NAS4,NAS5,NAS6,NAS3,NAS2,NAS1	OsNAS4,OsNAS5,OsNAS6,OsNAS3,OsNAS2,OsNAS1
30125	15220467	Wong HL, Sakamoto T, Kawasaki T, Umemura K, Shimamoto K.	Down-regulation of metallothionein, a reactive oxygen scavenger, by the small GTPase OsRac1 in rice.	Plant Physiol.	135(3)	1447-1456	2004	MTI1A,MT2B,MTI3B,RAC1,MTII1A,MTI4A,MTI2B,MT2A,MTI3A,MTI4C	MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsMT4, OsMT-II-1a, MT4, MT-II-1a,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c
30128		Yamada T, Tozawa Y, Hasegawa H, Terakawa T, Ohkawa Y, Wakasa K.	Use of a feedback-insensitive  subunit of anthranilate synthase as a selectable marker for transformation of rice and potato	Molecular Breeding	14(4)	363-373	2004	ASA1	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
30130		A. Horigome, K. Ikeda, M. Ito, Y. Yamaguchi and Y. Nagato	OPEN BEAKgene regulates floral morphogenesis in rice.	RGN	22	39-41	2005	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB
30132	16798873	Yang B, Sugio A, White FF.	Os8N3 is a host disease-susceptibility gene for bacterial blight of rice.	Proc. Natl. Acad. Sci. U.S.A.	103(27)	10503-10508	2006	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
30133	16623902	de la Torre F, De Santis L, Suarez MF, Crespillo R, Canovas FM.	Identification and functional analysis of a prokaryotic-type aspartate aminotransferase: implications for plant amino acid metabolism.	Plant J.	46(3)	414-425	2006	AAT	OsAAT
30135	9037160	Zarembinski TI, Theologis A.	Expression characteristics of OS-ACS1 and OS-ACS2, two members of the 1-aminocyclopropane-1-carboxylate synthase gene family in rice (Oryza sativa L. cv. Habiganj Aman II) during partial submergence.	Plant Mol. Biol.	33(1)	71-77	1997	ACS2,ACS1	OsACS2, Os-ACS2,ACC1*, OsACS1, Os-ACS1, ACC1
30137	12011339	Zhou Z, de Almeida Engler J, Rouan D, Michiels F, Van Montagu M, Van Der Straeten D.	Tissue localization of a submergence-induced 1-aminocyclopropane-1-carboxylic acid synthase in rice.	Plant Physiol.	129(1)	72-84	2002	ACS5	OsACS5, OS-ACS5, OsBphi008a
30138	17059407	Zhuang X, Jiang J, Li J, Ma Q, Xu Y, Xue Y, Xu Z, Chong K.	Over-expression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle trafficking and root development.	Plant J.	48(4)	581-591	2006	AGAP	OsAGAP
30139		Osakabe K, Endo M, Kawai K, Nishizawa Y, Ono K, Abe K, Ishikawa Y, Nakamura H, Ichikawa H, Nishimura S, Shimizu T, Toki S.	The Mutant Form of Acetolactate Synthase Genomic DNA from Rice is an Efficient Selectable Marker for Genetic Transformation	Molecular Breeding	16(4)	313-320	2005	ALS	OsALS, AHAS
30140	8052231	Tanida I, Kim JK, Wu R.	Functional dissection of a rice high-pI alpha-amylase gene promoter.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	244(2)	127-134	1994	AMY1B	Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c 
30141	16514560	Zhou CJ, Li J, Zou JC, Liang FS, Ye CJ, Jin DM, Weng ML, Wang B.	Cloning and characterization of a second form of the rice adenine phosphoribosyl transferase gene (OsAPT2) and its association with TGMS.	Plant Mol. Biol.	60(3)	365-376	2006	APT2	OsAPT2, APRT
30143	16850192	Xu,R., Song,F. and Zheng,Z.	OsBISAMT1, a gene encoding S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase, is differentially expressed in rice defense responses.	Mol. Biol. Rep.	33(3)	223-231	2006	BISAMT1	OsBISAMT1
30146	16407447	Nakamura A, Fujioka S, Sunohara H, Kamiya N, Hong Z, Inukai Y, Miura K, Takatsuto S, Yoshida S, Ueguchi-Tanaka M, Hasegawa Y, Kitano H, Matsuoka M.	The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice.	Plant Physiol.	140(2)	580-590	2006	D61,BRL3,BRL1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsBRL3,OsBRL1
30147		Ganesh Kumar Agrawal, Shigeru Tamogami, Hitoshi Iwahashi, Vishwanath Prasad Agrawal, Randeep Rakwal.	Transient regulation of jasmonic acid-inducible rice MAP kinase gene (OsBWMK1) by diverse biotic and abiotic stresses.	Plant Physiol. Biochem.	41(4)	355-361	2003	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S
30148		Morita R, Kusaba M, Yamaguchi H, Amano E, Miyao A, Hirochika Hi, Nishimura M.	Characterization of Chlorophyllide a Oxygenase (CAO) in Rice	Breeding Science	55(3)	361-364	2005	CAO2	OsCAO2, OsCAO, CAO
30149	15952067	Lee S, Kim JH, Yoo ES, Lee CH, Hirochika H, An G.	Differential regulation of chlorophyll a oxygenase genes in rice.	Plant Mol. Biol.	57(6)	805-818	2005	YGL10,CAO2	CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsCAO2, OsCAO, CAO
30151	15980189	Hwang YS, Bethke PC, Cheong YH, Chang HS, Zhu T, Jones RL.	A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function.	Plant Physiol.	138(3)	1347-1358	2005	CBL8,CBL2,CBL5,CBL1,CBL3,CBL7,CBL9,CBL10,CBL6,CBL4	OsCBL8,OsCBL2,OsCBL5,OsCBL1, Os-CBL1,OsCBL3,OsCBL7,OsCBL9,OsCBL10,OsCBL6,OsCBL4, SOS3, OsSOS3
30154	12956525	Akimoto-Tomiyama C, Sakata K, Yazaki J, Nakamura K, Fujii F, Shimbo K, Yamamoto K, Sasaki T, Kishimoto N, Kikuchi S, Shibuya N, Minami E.	Rice gene expression in response to N-acetylchitooligosaccharide elicitor: comprehensive analysis by DNA microarray with randomly selected ESTs.	Plant Mol. Biol.	52(3)	537-551	2003	CDPK1,CDPK7,CDPK11	OsCDPK1, OsCPK1,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK11, OsCPK11
30157	15604699	Abbasi F, Onodera H, Toki S, Tanaka H, Komatsu S.	OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath.	Plant Mol. Biol.	55(4)	541-552	2004	CDPK13	OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2
30158	12970476	Tanaka K, Murata K, Yamazaki M, Onosato K, Miyao A, Hirochika H.	Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall.	Plant Physiol.	133(1)	73-83	2003	CESA1,BC7,CESA8,CESA6,CESA5,CESA10,BC6,CESA2,CESA3,CESA7	OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA6, OsCESA6, OS_CESA06,OsCesA5, OsCESA5, OS_CESA05,OsCesA10, OsCESA10,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA2, OsCESA2, OS_CESA02,OsCesA3, OsCESA3, OS_CESA03,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
30164	16574868	Burton RA, Wilson SM, Hrmova M, Harvey AJ, Shirley NJ, Medhurst A, Stone BA, Newbigin EJ, Bacic A, Fincher GB.	Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1,3;1,4)-beta-D-glucans.	Science	311(5769)	1940-1942	2006	CSLF	Csl,OsCslF
30166	14500792	Washio K.	Functional dissections between GAMYB and Dof transcription factors suggest a role for protein-protein associations in the gibberellin-mediated expression of the RAmy1A gene in the rice aleurone.	Plant Physiol.	133(2)	850-863	2003	RPBF,AMY1A	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A
30167	16778011	Kong Z, Li M, Yang W, Xu W, Xue Y.	A novel nuclear-localized CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence in rice.	Plant Physiol.	141(4)	1376-1388	2006	DOS	OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4
30168	16514565	Wang,G., Ding,X., Yuan,M., Qiu,D., Li,X., Xu,C. and Wang,S.	Dual function of rice OsDR8 gene in disease resistance and thiamine accumulation.	Plant Mol. Biol.	60(3)	437-449	2006	PR10A,PR1A,PR1B,PAL1,POX22.3,DR8,PR4,PR5	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsDR8, OsXNP, FOXRED1,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR5, Pir2, PR-5, PR5-1
30169		Fujimoto M, Arimura S, Nakazono M, Tsutsumi N.	A Rice Dynamin-like Protein, OsDRP3A, Is Involved in Mitochondrial Fission	Breeding Science	54(4)	367-372	2004	DRP3A,DRP3B	OsDRP3A,OsDRP3B
30172	16786297	Mao,C., Wang,S., Jia,Q. and Wu,P.	OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive component.	Plant Mol. Biol.	61(1-2)	141-152	2006	EIL1,EIL1A,EIL1B,EIL3,EIL2,EIL4,EIL5,EIL6	OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a,OsEIL1a,OsEIL1b,OsEIL3,OsEIL2,OsEIL4,OsEIL5,OsEIL6
30183	16361526	Zhou M, Xu H, Wei X, Ye Z, Wei L, Gong W, Wang Y, Zhu Z.	Identification of a glyphosate-resistant mutant of rice 5-enolpyruvylshikimate 3-phosphate synthase using a directed evolution strategy.	Plant Physiol.	140(1)	184-195	2006	EPSPS	OsEPSPS
30185	15480789	Yang L, Zheng B, Mao C, Qi X, Liu F, Wu P.	Analysis of transcripts that are differentially expressed in three sectors of the rice root system under water deficit.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(4)	433-442.	2004	SIP2A,EXPA2	Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
30195	15604710	Oikawa T, Koshioka M, Kojima K, Yoshida H, Kawata M.	A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice.	Plant Mol. Biol.	55(5)	687-700	2004	SD1,GA20OX1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1
30197	16915516	Jan A, Kitano H, Matsumoto H, Komatsu S.	The rice OsGAE1 is a novel gibberellin-regulated gene and involved in rice growth.	Plant Mol. Biol.	62(3)	439-452	2006	GAE1	OsGAE1
30198	16792694	Tsuji H, Aya K, Ueguchi-Tanaka M, Shimada Y, Nakazono M, Watanabe R, Nishizawa NK, Gomi K, Shimada A, Kitano H, Ashikari M, Matsuoka M.	GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers.	Plant J.	47(3)	427-444	2006	GAMYB,GAMYBL1,GAMYBL2	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsGAMYBL1,OsGAMYBL2
30201	10712532	van der Knaap E, Kim JH, Kende H.	A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth.	Plant Physiol.	122(3)	695-704	2000	GRF1	OsGRF1
30202	16741739	Andaya VC, Tai TH.	Fine mapping of the qCTS12 locus, a major QTL for seedling cold tolerance in rice.	Theor. Appl. Genet.	113(3)	467-475	2006	qCTS12,GSTZ1,GSTZ2	qCTS12,OsGSTZ1, GSTZ-1,OsGSTZ2, GSTZ-2
30204	8628242	Sato Y, Tamaoki M, Murakami T, Yamamoto N, Kano-Murakami Y, Matsuoka M.	Abnormal cell divisions in leaf primordia caused by the expression of the rice homeobox gene OSH1 lead to altered morphology of leaves in transgenic tobacco.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	251(1)	13-22	1996	OSH1	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
30208	12428000	Scarpella E, Boot KJ, Rueb S, Meijer AH.	The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.	Plant Physiol.	130(3)	1349-1360	2002	HOX1	Oshox1, OsHox1
30214	15803416	Guan JC, Jinn TL, Yeh CH, Feng SP, Chen YM, Lin CY.	Characterization of the genomic structures and selective expression profiles of nine class I small heat shock protein genes clustered on two chromosomes in rice (Oryza sativa L.).	Plant Mol. Biol.	56(5)	795-809	2004	HSP80.2,HSP16.9B,HSP16.9A,HSP16.9D,HSP17.9B,HSP17.9A,HSP16.9C,HSP,HSP17.7,HSP17.3,HSP18.0	OsHsp80.2, OsHSP80.2,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3,Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI,Oshsp16.9D,Oshsp17.9B., OsHsp17.9B,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C,Oshsp,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,OsHsp17.3, OsHSP17.3, Oshsp17.3 ,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
30215	12650620	Agarwal M, Sahi C, Katiyar-Agarwal S, Agarwal S, Young T, Gallie DR, Sharma VM, Ganesan K, Grover A.	Molecular characterization of rice hsp101: complementation of yeast hsp104 mutation by disaggregation of protein granules and differential expression in indica and japonica rice types.	Plant Mol. Biol.	51(4)	543-553	2003	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C
30225	16500989	Ghosh Dastidar K, Maitra S, Goswami L, Roy D, Das KP, Majumder AL.	An insight into the molecular basis of salt tolerance of L-myo-inositol 1-P synthase (PcINO1) from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice.	Plant Physiol.	140(4)	1279-1296	2006	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
30226	16861569	Sakamoto T, Sakakibara H, Kojima M, Yamamoto Y, Nagasaki H, Inukai Y, Sato Y, Matsuoka M.	Ectopic expression of KNOTTED1-like homeobox protein induces expression of cytokinin biosynthesis genes in rice.	Plant Physiol.	142(1)	54-62	2006	IPT1,IPT7,IPT6,IPT5,IPT2,IPT8,IPT4,IPT3	OsIPT1,OsIPT7,OsIPT6, OsIPT6.p,OsIPT5,OsIPT2,OsIPT8,OsIPT4,OsIPT3
30234	15618430	Kubo A, Rahman S, Utsumi Y, Li Z, Mukai Y, Yamamoto M, Ugaki M, Harada K, Satoh H, Konik-Rose C, Morell M, Nakamura Y.	Complementation of sugary-1 phenotype in rice endosperm with the wheat isoamylase1 gene supports a direct role for isoamylase1 in amylopectin biosynthesis.	Plant Physiol.	137(1)	43-56	2005	ISA1,ISA3,ISA2	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,OsISA3,OsISA2
30242	10364408	van der Knaap E, Song WY, Ruan DL, Sauter M, Ronald PC, Kende H.	Expression of a gibberellin-induced leucine-rich repeat receptor-like protein kinase in deepwater rice and its interaction with kinase-associated protein phosphatase.	Plant Physiol.	120(2)	559-570	1999	TMK,OSKAPP	OsTMK,OsKAPP, OsPP94
30243	15604716	Kuijt SJ, Lamers GE, Rueb S, Scarpella E, Ouwerkerk PB, Spaink HP, Meijer AH.	Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.	Plant Mol. Biol.	55(6)	781-796	2004	OSH15,OSH1,OSKN2	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
30245	11908517	Postma-Haarsma AD, Rueb S, Scarpella E, den Besten W, Hoge JH, Meijer AH.	Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.	Plant Mol. Biol.	48(4)	423-441	2002	OSKN2,OSH15	OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
30255	11197326	Lim J, Moon YH, An G, Jang SK.	Two rice MADS domain proteins interact with OsMADS1.	Plant Mol. Biol.	44(4)	513-527	2000	LHS1,RAP1B,RAP1A	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
30256	16217607	Agrawal GK, Abe K, Yamazaki M, Miyao A, Hirochika H.	Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene.	Plant Mol. Biol.	59(1)	125-135	2005	MADS5,LHS1	OsMADS5, FDRMADS2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
30262	14558657	Xiao H, Wang Y, Liu D, Wang W, Li X, Zhao X, Xu J, Zhai W, Zhu L.	Functional analysis of the rice AP3 homologue OsMADS16 by RNA interference.	Plant Mol. Biol.	52(5)	957-966	2003	MADS4	OsMADS4, PI1
30272	16927200	Lu XC, Gong HQ, Huang ML, Bai SL, He YB, Mao X, Geng Z, Li SG, Wei L, Yuwen JS, Xu ZH, Bai SN.	Molecular analysis of early rice stamen development using organ-specific gene expression profiling.	Plant Mol. Biol.	61(6)	845-861	2006	MADS7	OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
30275	16861571	Xie K, Wu C, Xiong L.	Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.	Plant Physiol.	142(1)	280-293	2006	WFP,SPL1,SPL5,SPL6,SPL19,SPL3,SPL17,SPL18,MIR156B,SPL,MIR156A,MIR156C,MIR156J,MIR156D,MIR156E,MIR156I,MIR156F,MIR156G,MIR156L,MIR156K,SDT,SPL9,SPL2,SPL10,SPL11,SPL15,SPL12,SPL4,LG1,SPL7,GLW7 ,GW8	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,OsSPL1,OsSPL5,OsSPL6,OsSPL19,OsSPL3,OsSPL17,OsSPL18,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,OsSPL,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,OsSPL9,OsSPL2,OsSPL10,OsSPL11,OsSPL15,OsSPL12,OsSPL4,SPL8, OsSPL8, OsLG1,OsSPL7,OsSPL13, SPL13,SPL16, OsSPL16, SLP1, qGW8
30277	12436254	Asakura N, Nakamura C, Ishii T, Kasai Y, Yoshida S.	A transcriptionally active maize MuDR-like transposable element in rice and its relatives.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(3)	321-330	2002	MU10-1,MU91665,MU03578,MU03854,MU4-2,MU74283,MU90882,MU79843,MU	OsMu10-1,OsMu91665,OsMu03578,OsMu03854,OsMu4-2,OsMu74283,OsMu90882,OsMu79843,OsMu element
30286		K. Hibara and Y. Nagato	Petunia NO APICAL MERISTEM ortholog, OsNAM, is expressed in the embryonic SAM and organ Boundary in rice.	RGN	22	83-85	2005	CUC3,NAM	OsCUC3, ONAC107, NAC107,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2
30287		Araki R, Hasegawa H.	Expression of Rice (Oryza sativa L.) Genes Involved in High-Affinity Nitrate Transport during the Period of Nitrate Induction	Breeding Science	56(3)	295-302	2006	NRT2.2,NRT2.4,NRT2.3,NRT2.1,NAR2.2,NAR2.1	OsNRT2.2, OsNRT2.1,OsNRT2.4,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2,OsNAR2.2, OsNRT3.1B,OsNAR2.1, OsNRT3.1A
30305		Ganesh Kumar Agrawal, Randeep Rakwal, Nam-Soo Jwa, Vishwanath Prasad Agrawal.	Oryza sativa proteinase inhibitor gene, OsPIN, whose mRNA specifically accumulates in a compatible hostblast pathogen interaction.	Plant Physiol. Biochem.	40(2)	175-182	2002	PIN	OsPIN
30311	11867229	Ganesh Kumar Agrawala, Randeep Rakwalb, Nam-Soo Jwac,Vishwanath Prasad Agrawal	Effects of signaling molecules, protein phosphatase inhibitors and blast pathogen (Magnaporthe grisea) on the mRNA level of a rice (Oryza sativa L.) phospholipid hydroperoxide glutathione peroxidase(OsPHGPX) gene in seedling leaves	Gene	283(1-2)	227-236	2002	PHGPX	OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX 
30317	12805623	Sanchez R, Cejudo FJ.	Identification and expression analysis of a gene encoding a bacterial-type phosphoenolpyruvate carboxylase from Arabidopsis and rice.	Plant Physiol.	132(2)	949-957	2003	_,PPC,_,_	Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,Osppc-b,Osppc3, Osppc2, ppc3,ppc2,PEPC-1, Osppc1, ppc1
30321		Randeep Rakwal, Ganesh Kumar Agrawal, Masami Yonekura.	Light-dependent induction of OsPR10 in rice (Oryza sativa L.) seedlings by the global stress signaling molecule jasmonic acid and protein phosphatase 2A inhibitors.	Plant Sci.	161(3)	469-479	2001	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
30323		Ganesh Kumar Agrawal, Randeep Rakwal, Nam-Soo Jwa, Vishwanath Prasad Agrawal.	Signalling molecules and blast pathogen attack activates rice OsPR1a and OsPR1b genes: A model illustrating components participating during defence/stress response.	Plant Physiol. Biochem.	39(2)	1095-1103	2001	PR1,PR1A,PR1B	OsPR1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
30324	11097833	Agrawal GK, Rakwal R, Jwa NS.	Rice (Oryza sativa L.) OsPR1b gene is phytohormonally regulated in close interaction with light signals.	Biochem. Biophys. Res. Commun.	278	290-298	2000	PR1B	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
30334	16172097	Miki D, Itoh R, Shimamoto K.	RNA silencing of single and multiple members in a gene family of rice.	Plant Physiol.	138(4)	1903-1913	2005	RAC3,RAC4,RAC2,PDA,RAC5,RAC7,RAC6,RAC1	OsRac3,OsRAC4, OsRac4, ROP4, OsRop4,OsRAC2, OsRac2,PDS1, PDS, OsPDS, Pds,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OSRAC7, OsRac7, ROP5, OsRop5,OsRacB, RacB, OsRac6,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
30336	16531052	Jung YH, Agrawal GK, Rakwal R, Kim JA, Lee MO, Choi PG, Kim YJ, Kim MJ, Shibato J, Kim SH, Iwahashi H, Jwa NS.	Functional characterization of OsRacB GTPase--a potentially negative regulator of basal disease resistance in rice.	Plant Physiol. Biochem.	44(1)	68-77	2006	RAC6,RAC1	OsRacB, RacB, OsRac6,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
30343	17052323	Shimada A, Ueguchi-Tanaka M, Sakamoto T, Fujioka S, Takatsuto S, Yoshida S, Sazuka T, Ashikari M, Matsuoka M.	The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis.	Plant J.	48(3)	390-402	2006	SPY,SLR1	OsSPY,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
30344	10982424	Matsukura C, Saitoh T, Hirose T, Ohsugi R, Perata P, Yamaguchi J.	Sugar uptake and transport in rice embryo. Expression of companion cell-specific sucrose transporter (OsSUT1) induced by sugar and light.	Plant Physiol.	124(1)	85-94	2000	SUT1	OsSUT1, OsSUT2
30347	10889249	Jeon JS, Lee S, Jung KH, Jun SH, Kim C, An G.	Tissue-preferential expression of a rice alpha-tubulin gene, OsTubA1, mediated by the first intron.	Plant Physiol.	123(3)	1005-1014	2000	TUBA1	OsTubA1, TubA1, OS-TubA3, TubA3
30348	16286450	Zhang S, Chen C, Li L, Meng L, Singh J, Jiang N, Deng XW, He ZH, Lemaux PG.	Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family.	Plant Physiol.	139(3)	1107-1124	2005	WAK105,WAK18,WAK46,WAK10,WAK125,WAK50,WAK74,DEES1,WAK73,WAK96/97,WAK111,WAK122,WAK9,WAK59,WAK66,WAK81,WAK55,WAK128,WAK112,WAK103,WAK104,WAK106,WAK107,WAK108,WAK109/110,WAK113,WAK115,WAK114,WAK116,WAK118,WAK117,WAK119,WAK120,WAK121,WAK124,WAK126,WAK127,WAK,WAK129,WAK1,WAK2,WAK3,WAK5,WAK6,WAK7/8,WAK11,WAK14,WAK17,WAK19,WAK21,WAK22,WAK23,WAK24,WAK27,WAK28,WAK29,WAK30/31,WAK34,WAK33,WAK35,WAK38,WAK43,WAK44,WAK48,WAK49,WAK51,WAK41,WAK53,WAK54,WAK61,WAK52,WAK63,WAK62,WAK64,WAK65,WAK67,WAK68,WAK69,WAK75,WAK76,WAK78,WAK79,WAK80,WAK83,WAK84,WAK86,WAK88,WAK89A,WAK89B,WAK90,WAK92,WAK123,WAK13,WAK26,WAK25,WAK37,WAK39,WAK40,WAK42,WAK56,WAK57/58,WAK60,WAK87,WAK94,WAK95,WAK85,WAK12,WAK15,WAK16,WAK71,WAK47,WAK4,WAK72,WAK82,WAK98,WAK70,WAK93,WAK100,WAK102,WAK36,WAK77,WAK20,WAK99,WAK101,WAK32,WAK45	OsWAK105, YK3,OsWAK18,OsWAK46,OsWAK10,OsWAK125,OsWAK50,OsWAK74,WAK91, OsWAK91, OsDEES1,OsWAK73,OsWAK96/97, OsWAK96, OsWAK97,OsWAK111,OsWAK122,OsWAK9,OsWAK59,OsWAK66,OsWAK81, OsRLCK273, RLCK273,OsWAK55,OsWAK128,OsWAK112, OsWAK112d ,OsWAK103,OsWAK104,OsWAK106,OsWAK107,OsWAK108,OsWAK109/110, OsWAK109, OsWAK110,OsWAK113,OsWAK115,OsWAK114,OsWAK116,OsWAK118,OsWAK117,OsWAK119,OsWAK120,OsWAK121,OsWAK124,OsWAK126,OsWAK127,OsWAK,OsWAK129, OsRLCK375, RLCK375,OsWAK1, WAK-1,OsWAK2,OsWAK3,OsWAK5,OsWAK6,OsWAK7/8, OsWAK7, OsWAK8,OsWAK11,OsWAK14,OsWAK17,OsWAK19,OsWAK21,OsWAK22,OsWAK23,OsWAK24,OsWAK27,OsWAK28,OsWAK29,OsWAK30, OsWAK30/OsWAK31, OsWAK31,OsWAK34,OsWAK33,OsWAK35,OsWAK38,OsWAK43,OsWAK44,OsWAK48,OsWAK49,OsWAK51,OsWAK41,OsWAK53, OsWAK53a,OsWAK54,OsWAK61,OsWAK52,OsWAK63,OsWAK62,OsWAK64,OsWAK65,OsWAK67,OsWAK68,OsWAK69,OsWAK75,OsWAK76,OsWAK78,OsWAK79,OsWAK80,OsWAK83,OsWAK84,OsWAK86,OsWAK88,OsWAK89a,OsWAK89b,OsWAK90,OsWAK92, OsDEES1-L4,OsWAK123,OsWAK13,OsWAK26,OsWAK25,OsWAK37,OsWAK39,OsWAK40,OsWAK42,OsWAK56,OsWAK57/58, OsWAK57, OsWAK58,OsWAK60,OsWAK87,OsWAK94,OsWAK95,OsWAK85, YK10,OsWAK12, OsRLCK75, RLCK75,OsWAK15, OsRLCK76, RLCK76,OsWAK16, OsRLCK77, RLCK77,OsWAK71, OsRLCK229, RLCK229,OsWAK47, OsRLCK147, RLCK147,OsWAK4, OsRLCK32, RLCK32,OsWAK72, OsRLCK228, RLCK228,OsWAK82, OsRLCK274, RLCK274,OsWAK98, OsRLCK287, RLCK287,OsWAK70, OsRLCK230, RLCK230,OsWAK93, OsRLCK286, RLCK286,OsWAK100, OsRLCK291, RLCK291,OsWAK102, OsRLCK293, RLCK293,OsWAK36, OsRLCK140, RLCK140,OsWAK77, OsRLCK252, RLCK252,OsWAK20,OsWAK99,OsWAK101, OsRLCK292, RLCK292,OsWAK32,OsWAK45, OsRLCK143, RLCK143
30350	16623886	Xie Z, Zhang ZL, Zou X, Yang G, Komatsu S, Shen QJ.	Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.	Plant J.	46(2)	231-242	2006	WRKY51,WRKY71	OsWRKY51,OsWRKY71, WRKY-71
30353	10712549	Uozu S, Tanaka-Ueguchi M, Kitano H, Hattori K, Matsuoka M.	Characterization of XET-related genes of rice.	Plant Physiol.	122(3)	853-859	2000	XTH23,XTH3,XTH11,XTH2	OsXTH23, XTR3, OsXTR3,OsXTH3, XTR4, OsXTR4,OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH2, XTR1, OsXTR1
30357	15604733	Jang S, Hur J, Kim SJ, Han MJ, Kim SR, An G.	Ectopic expression of OsYAB1 causes extra stamens and carpels in rice.	Plant Mol. Biol.	56(1)	133-143	2004	YAB1,SH1,YAB5,YAB3	OsYAB1, FIL1, osFIL1,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1,OsYAB3, OsYAB4, TOB3
30367		Ebron L A, Fukuta Y, Imbe T, Kato H, Yanoria JMT, Tsunematsu H, Khush GS, Yokoo M.	Estimation of Genes in Blast Resistance in Elite Indica-type Rice (Oryza sativa L.) Varieties-bred at the International Rice Research Institute	Breeding Science	54(4)	381-387	2004	PI20,PITA,PIK	Pi20, Pi20(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
30369	12111554	Liu G, Lu G, Zeng L, Wang GL.	Two broad-spectrum blast resistance genes, Pi9( t) and Pi2( t), are physically linked on rice chromosome 6.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	267(4)	472-480	2002	PI9,PIZ	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
30371	15856160	Wu JL, Fan YY, Li DB, Zheng KL, Leung H, Zhuang JY.	Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates.	Theor. Appl. Genet.	111(1)	50-56	2005	PI25,PI26,PIB	Pi25, Pi25(t),Pi26(t), Pi26,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
30372	16151856	Liu XQ, Wang L, Chen S, Lin F, Pan QH.	Genetic and physical mapping of Pi36(t), a novel rice blast resistance gene located on rice chromosome 8.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	274(4)	394-401	2005	PI11,PIGD1,PI29,PI33,PI36	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi-GD-1(t), PiGD1, PiGD-1(t),Pi-29(t), Pi29(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi36(t), Pi36
30373	16189658	Chen S, Wang L, Que Z, Pan R, Pan Q.	Genetic and physical mapping of Pi37(t), a new gene conferring resistance to rice blast in the famous cultivar St. No. 1.	Theor. Appl. Genet.	111(8)	1563-1570	2005	PIF,PI37	Pi f, PIF, Pif, RMg3, Pi-f,Pi37(t), Pi37
30374	12756540	Jeon JS, Chen D, Yi GH, Wang GL, Ronald PC.	Genetic and physical mapping of Pi5(t), a locus associated with broad-spectrum resistance to rice blast.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	269(2)	280-289	2003	PI3,PI5	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2
30376	12172799	Chauhan RS, Farman ML, Zhang HB, Leong SA.	Genetic and physical mapping of a rice blast resistance locus, Pi-CO39(t), that corresponds to the avirulence gene AVR1-CO39 of Magnaporthe grisea.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	267(5)	603-612	2002	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
30377		X. W. Chen, S. G. Li, J. C. Xu, W. X. Zhai, Z. Z. Ling, B. T. Ma, Y. P. Wang, W. M. Wang, G. Cao, Y. Q. Ma, J. J. Shang, X. F. Zhao, K. D. Zhou, L. H. Zhu	Identification of Two Blast Resistance Genes in a Rice Variety, Digu	J. Phytopathology	152(2)	77-85	2004	PID2,PID1	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t),Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
30378	16709195	Chen X, Shang J, Chen D, Lei C, Zou Y, Zhai W, Liu G, Xu J, Ling Z, Cao G, Ma B, Wang Y, Zhao X, Li S, Zhu L.	A B-lectin receptor kinase gene conferring rice blast resistance.	Plant J.	46(5)	794-804	2006	PID1,PID2	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t)
30383		C.L. Lei, D.Y. Huang, W. Li, J.L. Wang, Z.L. Liu, X.T. Wang, K. Shi, Z.J. Cheng, X. Zhsng, Z.Z. Ling and J.M. Wan	Molecular mapping of a blast resistance gene in an indica rice cultivar Yanxian No.1.	RGN	22	76-77	2005	PIX,PIY1,PIY2	Pi-x(t), Pi-x1,Pi-y1(t), Pi-y(t), Piy1(t),Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t)
30384		Fjellstrom R, McClung AM, Shank AR	SSR Markers Closely Linked to the Pi-z Locus are Useful for Selection of Blast Resistance in a Broad Array of Rice Germplasm	Molecular Breeding	17(2)	149-157	2006	PIZ,PIZT	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
30385	16791691	Hayashi K, Yoshida H, Ashikawa I.	Development of PCR-based allele-specific and InDel marker sets for nine rice blast resistance genes.	Theor. Appl. Genet.	113(2)	251-260	2006	PIB,PIKM,PIKP,PITA,PIT,PIZ,PIK,PIZT	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
30387		T. Kawakatsu and Y. Nagato	PLASTOCHRON3 gene regulates leaf initiation rate and terminstion of vegetative phase.	RGN	22	36-38	2005	GO	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7
30388	15912317	Lu Q, Li XH, Guo D, Xu CG, Zhang Q.	Localization of pms3, a gene for photoperiod-sensitive genic male sterility, to a 28.4-kb DNA fragment.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	273(6)	507-511	2005	PMS3	pms3, LDMAR
30392	16091467	Nishimura A, Ashikari M, Lin S, Takashi T, Angeles ER, Yamamoto T, Matsuoka M.	Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems.	Proc. Natl. Acad. Sci. U.S.A.	102(33)	11940-11944	2005	PSR1	PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR
30393		W.C. Li, L. Jiang, S.D. Huang, L.L. Liu, H.Q. Zhai and J.M. Wan	Fine mapping of a pollen semi-sterility gene in rice (Oryza sativa L.).	RGN	22	23-25	2005	PSS1	pss1, OsPSS1
30394		Takeuchi Y, Hayasaka H, Chiba B, Tanaka I, Shimano T, Yamagishi M, Nagano K, Sasaki T, Yano M.	Mapping Quantitative Trait Loci Controlling Cool-temperature Tolerance at Booting Stage in Temperate Japonica Rice	Breeding Science	51(3)	191-197	2001	qHD-3-1,qHD-3-2,qHD-6,qCL-1,qCL-7,qCT-1,qCT-11,qCT-7	qHD-3-1,qHD-3-1(t)(qHD-3),qHD-3-2,qHD-3-2(t)(hd3),qHD-6,qHD-6(t)(hd6),qCL-1,qCL-7,qCT-1,qCT-11,qCT-7
30400		Fujino K, Sekiguchi H.	Identification of QTLs Conferring Genetic Variation for Heading Date among Rice Varieties at the Northern-limit of Rice Cultivation	Breeding Science	55(2)	141-146	2005	-	qDTH (qDTH-1, qDTH-7)
30401	15940510	Fujino K, Sekiguchi H.	Mapping of QTLs conferring extremely early heading in rice (Oryza sativa L.).	Theor. Appl. Genet.	111(2)	393-398	2005	qDTH-7-1,qDTH-7-2	qDTH-7-1,qDTH-7-1(t)(dth7.1),qDTH-7-2,qDTH-7-2(t)(dth7.1)
30402	16791702	Zhang Y, Luo L, Xu C, Zhang Q, Xing Y.	Quantitative trait loci for panicle size, heading date and plant height co-segregating in trait-performance derived near-isogenic lines of rice (Oryza sativa).	Theor. Appl. Genet.	113(2)	361-368	2006	qGpp,qHd,qPh,-	qGpp,qHd,qPh,qSpp:
30407	16418858	Taguchi-Shiobara F, Yamamoto T, Yano M, Oka S.	Mapping QTLs that control the performance of rice tissue culture and evaluation of derived near-isogenic lines.	Theor. Appl. Genet.	112(5)	968-976	2006	qIC,qIw,qSc,qSv	qIc,qIw,qSc,qSv
30409		Takehisa H, Ueda T, Fukuta Y, Obara M, Abe T, Yano M, Yamaya T, Kameya T, Higashitani A, Sato T.	Epistatic Interaction of QTLs Controlling Leaf Bronzing in Rice (Oryza sativa L.) Grown in a Saline Paddy Field	Breeding Science	56(3)	287-293	2006	qLb-3, qLb-11	qLb-3, qLb-11
30410		Yamasaki M, Yoshimura A, Yasui H.	Genetic basis of ovicidal response to whitebacked planthopper (Sogatella furcifera Horvath) in rice (Oryza sativa L.)	Molecular Breeding	12(2)	133-143	2003	qOVA1-3,qOVA5-1,qOVA4	qOVA1-3,qOVA-1-3(t),qOVA5-1,qOVA-5-1(t),qOVA4,qOVA5-2,qOVA6 (?)
30411	16331475	Mei HW, Xu JL, Li ZK, Yu XQ, Guo LB, Wang YP, Ying CS, Luo LJ.	QTLs influencing panicle size detected in two reciprocal introgressive line (IL) populations in rice (Oryza sativa L.).	Theor. Appl. Genet.	112(4)	648-656	2006	qPBNm,qSBN,qSNP	qPBNm,qSBN,qSNP
30413		Dai L, Lin X, Ye C, Ise K, Saito K, Kato A, Xu F, Yu T, Zhang D.	Identification of Quantitative Trait Loci Controlling Cold Tolerance at the Reproductive Stage in Yunnan Landrace of Rice, Kunmingxiaobaigu	Breeding Science	54(3)	253-258	2004	qRCT3,qRCT6a,qRCT6b,qRCT7	qRCT3,qRCT6a,qRCT6b,qRCT7
30417		Sato H, Ideta O, Ando I, Kunihiro Y, Hirabayashi H, Iwano M, Miyasaka A, Nemoto H, Imbe T.	Mapping QTLs for Sheath Blight Resistance in the Rice Line WSS2	Breeding Science	54(3)	265-271	2004	qSB (qSB-3,qSB-12)	qSB (qSB-3,qSB-12)
30420	16845479	Zhang X, Zhou S, Fu Y, Su Z, Wang X, Sun C.	Identification of a drought tolerant introgression line derived from Dongxiang common wild rice (O. rufipogon Griff.).	Plant Mol. Biol.	62(1-2)	247-259	2006	qSDT12-2,qSDT2-1	qSDT12-2,qSDT2-1
30422	16614172	Konishi S, Izawa T, Lin SY, Ebana K, Fukuta Y, Sasaki T, Yano M.	An SNP caused loss of seed shattering during rice domestication.	Science	312(5778)	11392-1396	2006	qSH11,qSH12,qSH2,qSH5,qSH1	qSH11,qSH12,qSH2,qSH5,qSH1, qsh1, qSH-1
30430		Y. Hattori, M. Ashikari, H. Kitano and M. Matsuoka	Detection QTLs for deepwater rice ability.	RGN	22	71-72	2005	-	qTIL-4, qTIL-7, qTIL-12, qNEI-12
30436	10809440	Hu J, Reddy VS, Wessler SR.	The rice R gene family: two distinct subfamilies containing several miniature inverted-repeat transposable elements.	Plant Mol. Biol.	42(5)	667-678	2000	RA1,RB2,RB	Ra1,Rb2,Rb, Rb*, bhlh165, OsbHLH165
30438	10798615	Toyofuku K, Loreti E, Vernieri P, Alpi A, Perata P, Yamaguchi J.	Glucose modulates the abscisic acid-inducible Rab16A gene in cereal embryos.	Plant Mol. Biol.	42(3)	451-460	2000	RAB16A	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
30439		Saika H, Matsumura H, Takano T, Tsutsumi N, Nakazono M.	A Point Mutation of Adh1 Gene is Involved in the Repression of Coleoptile Elongation under Submergence in Rice	Breeding Science	56(1)	69-74	2006	RAD	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 
30445	9765537	Gesch RW, Boote KJ, Vu JC, Hartwell Allen Jr L , Bowes G.	Changes in growth CO2 result in rapid adjustments of ribulose-1, 5-bisphosphate Carboxylase/Oxygenase small subunit gene expression in expanding and mature leaves of rice	Plant Physiol.	118(2)	521-529	1998	_,RBCS	rbcL,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
30446	11094984	Nomura M, Katayama K, Nishimura A, Ishida Y, Ohta S, Komari T, Miyao-Tokutomi M, Tajima S, Matsuoka M.	The promoter of rbcS in a C3 plant (rice) directs organ-specific, light-dependent expression in a C4 plant (maize), but does not confer bundle sheath cell-specific expression.	Plant Mol. Biol.	44(1)	99-106	2000	_	rbcS
30448	15057557	Liu XQ, Xu X, Tan YP, Li SQ, Hu J, Huang JY, Yang DC, Li YS, Zhu YG.	Inheritance and molecular mapping of two fertility-restoring loci for Honglian gametophytic cytoplasmic male sterility in rice (Oryza sativaL.).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	271(5)	586-594	2004	RF6,RF1	Rf6(t),Rf6(t)*, Rf5, Rf6,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
30450	16798940	Yamamoto MP, Onodera Y, Touno SM, Takaiwa F.	Synergism between RPBF Dof and RISBZ1 bZIP activators in the regulation of rice seed expression genes.	Plant Physiol.	141(4)	1694-1707	2006	RISBZ1,RPBF	OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF
30451	15947907	Fujii S, Toriyama K.	Molecular mapping of the fertility restorer gene for ms-CW-type cytoplasmic male sterility of rice.	Theor. Appl. Genet.	111(4)	696-701	2005	RMS	RFcw, RFCW, RfcwARf17
30455	16889974	Liu D, Zhang X, Cheng Y, Takano T, Liu S.	rHsp90 gene expression in response to several environmental stresses in rice (Oryza sativa L.).	Plant Physiol. Biochem.	44(5-6)	380-386	2006	HSP90	OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
30457	10949374	Schaffrath U, Mauch F, Freydl E, Schweizer P, Dudler R.	Constitutive expression of the defense-related Rir1b gene in transgenic rice plants confers enhanced resistance to the rice blast fungus Magnaporthe grisea.	Plant Mol. Biol.	43(1)	59-66	2000	RIR1B,_	Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28,RIR1b, Rir1b, OsRALF-30, OsRALF30, RALF-30, RALF30
30459	16603668	Ueda M, Arimura S, Yamamoto MP, Takaiwa F, Tsutsumi N, Kadowaki K.	Promoter shuffling at a nuclear gene for mitochondrial RPL27. Involvement of interchromosome and subsequent intrachromosome recombinations.	Plant Physiol.	141(2)	702-710	2006	SPT16,RPL27-3,RPL27-2,RPL27-1	Osspt16,rpl27-3, rpl27, mtRPL27a,rpl27-2, rpl27, mtRPL27a, S27,rpl27-1, rpl27, mtRPL27b, S27
30460	2381420	Shimada H, Fukuta M, Ishikawa M, Sugiura M.	Rice chloroplast RNA polymerase genes: the absence of an intron in rpoC1 and the presence of an extra sequence in rpoC2.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	221(3)	395-402	1990	RPOC2,RPOC1	rpoC2, RPO beta", RPObeta",rpoC1, RPO beta', RPObeta'
30463	9645425	Handa H, Kubo N, Kadowaki K.	Genes for the ribosomal S4 protein encoded in higher plant mitochondria are transcribed, edited, and translated.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	258(3)	199-207	1998	RPS4	rps4
30464	16897470	Luo H, Lee JY, Hu Q, Nelson-Vasilchik K, Eitas TK, Lickwar C, Kausch AP, Chandlee JM, Hodges TK.	RTS, a rice anther-specific gene is required for male fertility and its promoter sequence directs tissue-specific gene expression in different plant species.	Plant Mol. Biol.	62(3)	397-408	2006	RTS	RTS, RTS2
30467	11999843	Price AH, Townend J, Jones MP, Audebert A, Courtois B.	Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa.	Plant Mol. Biol.	48(5-6)	683-695	2002	RWCA,RWCW,W7LD,W7LR,W8RWC	RWCA,RWCW,W7LD,W7LR,W8RWC
30469		F. Y. Hu, P. Xu, X. N. Deng, J. W. Zhou, J. Li and D.Y. Tao	Molecular mapping of a new pollen killer gene S29(t) on chromosome 2 in Oryza glaberrima.	RGN	21	31-33	2004	S29	S29(t)
30470		D.T. Li, S.S. Zhu, L. Jiang and J.M. Wan	Mapping for a new locus causing hybrid sterility in a China landrace (Oryza sativa L.).	RGN	22	20-22	2005	S32,S32N,S5	S32-kn , S32-ti ,S32-n,S32(t)(=qSS2) ,S32n(t)(=qSS5),S5-3, S5-4
30472		G. Ren, P. Xu, X. Deng, J. Zhou, F. Hu, J. Li, F. Li, Z. Zhang and D. Tao	A new gamete eliminator from Oryza glaberrima.	RGN	22	45-47	2005	S33	S33(t)
30473		Z. Zhang, P. Xu, F. Hu, J. Zhou, J.Li, X. Deng, G. Ren, F. Li and D. Tao	A new sterile gene from Oryza glaberrima on chromosome 3.	RGN	22	26-28	2005	S34	S34-id ,S34-j.,S34-n,S34(t) 
30474	16788798	Singh SP, Sundaram RM, Biradar SK, Ahmed MI, Viraktamath BC, Siddiq EA.	Identification of simple sequence repeat markers for utilizing wide-compatibility genes in inter-subspecific hybrids in rice (Oryza sativa L.).	Theor. Appl. Genet.	113(3)	509-517	2006	S5,S8	S5-3, S5-4,
30476	16177904	Qiu SQ, Liu K, Jiang JX, Song X, Xu CG, Li XH, Zhang Q.	Delimitation of the rice wide compatibility gene S5 ( n ) to a 40-kb DNA fragment.	Theor. Appl. Genet.	111(6)	1080-1086	2005	S5-N	S5-n
30477	16133303	Ji Q, Lu J, Chao Q, Gu M, Xu M.	Delimiting a rice wide-compatibility gene S5n to a 50 kb region.	Theor. Appl. Genet.	111(8)	1495-1503	2005	S5-N	S5-n
30482	14526120	Satoh H, Nishi A, Yamashita K, Takemoto Y, Tanaka Y, Hosaka Y, Sakurai A, Fujita N, Nakamura Y.	Starch-branching enzyme I-deficient mutation specifically affects the structure and properties of starch in rice endosperm.	Plant Physiol.	133(3)	1111-1121	2003	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
30483		Murai M, Komazaki T, Sato S.	Effects of sd1 and Ur1 (Undulate rachis -1) on Lodging Resistance and Related Traits in Rice	Breeding Science	54(4)	333-340	2004	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
30487	10323229	Teraishi M, Okumoto Y, Hirochika H, Horibata A, Yamagata H, Tanisaka T.	Identification of mutable slender glume gene in rice (Oryza sativa L.).	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	261(1)	487-494	1999	SLG	slg, Rurm1, Urm1
30490	12650614	Yap MN, Lee RH, Huang YJ, Liao CJ, Chen SC.	Molecular characterization of a novel senescence-associated gene SPA15 induced during leaf senescence in sweet potato.	Plant Mol. Biol.	51(4)	471-481	2003	SPA15	SPA15
30491		Miyata M, Komori T, Yamamoto T, Ueda T, Yano M, Nitta N.	Fine Scale and Physical Mapping of Spk(t) Controlling Spreading Stub in Rice	Breeding Science	55(2)	237-239	2005	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
30492	15258851	Liu G, Wang L, Zhou Z, Leung H, Wang GL, He C.	Physical mapping of a rice lesion mimic gene, Spl1 , to a 70-kb segment of rice chromosome 12.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	272(2)	108-115	2004	SPL1	Spl1, spl1(sl,bl2), sl, bl2, spl1
30493	12395200	Zeng L, Yin Z, Chen J, Leung H, Wang GL.	Fine genetic mapping and physical delimitation of the lesion mimic gene Spl11 to a 160-kb DNA segment of the rice genome.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	268(2)	253-261	2002	SPL11	spl11, spl11*, OsPUB11, PUB11
30494	15888683	Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL.	Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction.	Plant Physiol.	138(1)	105-115	2005	SPL11	spl11, spl11*, OsPUB11, PUB11
30497	11027714	Chavez-Barcenas AT, Valdez-Alarcon JJ, Martinez-Trujillo M, Chen L, Xoconostle-Cazares B, Lucas WJ, Herrera-Estrella L.	Tissue-specific and developmental pattern of expression of the rice sps1 gene.	Plant Physiol.	124(2)	641-654	2000	SPS1	sps1, OsSPS1, SPS
30498		S.G. Yao and M. Ichii	Genetic interaction between srt5 and srt6, two short-root mutations in rice (Oryza sativa L.).	RGN	21	10-13	2004	SRT5,SRT6	srt5,srt6
30500		Yu W, Wang C, Ikehashi H, Wan J.	Mapping of a Novel Gene for Semi-sterility in Rice (Oryza sativa L.)	Breeding Science	55(1)	15-20	2005	SS1	ss-1(t)
30501		Sunohara H, Miura K, Wu X, Saeda T, Mizuno S, Ashikari M, Matsuoka M, Kitano H.	Effects of Ssil Gene Controlling dm-type Internode Elongation Pattern on Lodging Resistance and Panicle Characters in Rice	Breeding Science	56(3)	261-268	2006	SSI1	Ssi1, Ssi1(Dm1)*, Dm1, Ssi1
30503	10852491	Xu K, Xu X, Ronald PC, Mackill DJ.	A high-resolution linkage map of the vicinity of the rice submergence tolerance locus Sub1.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	263(4)	681-389	2000	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
30504	16816135	Fukao T, Xu K, Ronald PC, Bailey-Serres J.	A variable cluster of ethylene response factor-like genes regulates metabolic and developmental acclimation responses to submergence in rice.	Plant Cell	18(8)	2021-2034	2006	SUB1B,SUB1C,SUB1,SUB1A	Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
30506		C.Y. Yu, X.J. Wei, L.M. Chen, L. Jiang, H.Q. Zhai and J.M. Wan	Identification of a dominant suppressor of photoperiod-sensitive gene using indica/japonica backcrossed progenies in rice (Oryza sativa L.).	RGN	22	54-57	2005	SUPS6	Su-PS-6(t)
30507		Takahashi S, Ishimaru K, Yazaki J, Fujii F, Shimbo K, Yamamoto K, Sakata K, Sasaki T, Kishimoto N, Kikuchi S.	Microarray Analysis of Sink-Source Transition in Rice Leaf Sheaths	Breeding Science	55(2)	153-162	2005	RSUS2,RSUS1	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2
30510		E. Yamamoto, M. Ashikari, T. Suzuka, A. Miyao, H. Hirochika, H. Kitano and M. Matsuoka	Characterization and mapping of tillering dwarf rice 1, tdr1.	RGN	22	42-44	2005	TDR1	tdr1
30511		Y. Hasegawa, E. Yamamoto, M. Ashikari, T. Sazuka, A. Miyao, H. Hirochika, H. Kitano and M. Matsuoka	Characterization and mapping of tillering dwarf rice 2, tdr2.	RGN	22	48-49	2005	TDR2	tdr2
30512	14576284	Ishimaru K.	Identification of a locus increasing rice yield and physiological analysis of its function.	Plant Physiol.	133(3)	1083-1090	2003	TGW6	tgw6, OsSTRL7, STRL7
30513	16133314	Lee DS, Chen LJ, Suh HS.	Genetic characterization and fine mapping of a novel thermo-sensitive genic male-sterile gene tms6 in rice (Oryza sativa L.).	Theor. Appl. Genet.	111(7)	1271-1277	2005	TMS6	tms6
30514	1685658	Umeda M, Ohtsubo H, Ohtsubo E.	Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns	Jpn. J. Genet.	66(5)	569-586	1991	TNR1	Tnr1
30516	11361345	Yamazaki M, Tsugawa H, Miyao A, Yano M, Wu J, Yamamoto S, Matsumoto T, Sasaki T, Hirochika H.	The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	265(2)	336-344	2001	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
30517	16821043	Cheng C, Daigen M, Hirochika H.	Epigenetic regulation of the rice retrotransposon Tos17.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	276(4)	378-390	2006	TOS17	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
30521		K. Asano, K. Miura, Y. Hasegawa, H. Hirochika, M. Ashikari, H. Kitano, M. Matsuoka and Y. R. Lin	Mapping of the TINY RICE 1 gene, TR1.	RGN	21	19-21	2004	TR1	tr1
30523		Y. Hattori, M. Kaneko, M. Ashikari, M. Matsuoka and K. Hattori	Mapping of the TEMPERATURE SENSITIVE gene, TS.	RGN	22	68-70	2005	TS	
30525		Masayuki Murai,Tomoaki Komazaki,Shigetoshi Sato	Effects of sd1 and Url1(Undulate rachis -1) on Lodging Resisitance and Related Traits in Rice	Breeding Science	54(4)	333-340	2004	UR1	Ur1
30526		Murai M, Nakamura K, Saito M, Nagayama A, Ise K.	Yield-increasing Effect of a Major Gene, Ur1 (Undulate rachis-1) on Different Genetic Backgrounds in Rice	Breeding Science	55(3)	279-285	2005	UR1	Ur1
30530	11244118	Isshiki M, Yamamoto Y, Satoh H, Shimamoto K.	Nonsense-mediated decay of mutant waxy mRNA in rice.	Plant Physiol.	125(3)	1388-1395	2001	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30532	14730444	Chu Z, Ouyang Y, Zhang J, Yang H, Wang S.	Genome-wide analysis of defense-responsive genes in bacterial blight resistance of rice mediated by the recessive R gene xa13.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	271(1)	111-120	2004	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
30533	16328230	Chu Z, Fu B, Yang H, Xu C, Li Z, Sanchez A, Park YJ, Bennetzen JL, Zhang Q, Wang S.	Targeting xa13, a recessive gene for bacterial blight resistance in rice.	Theor. Appl. Genet.	112(3)	455-461	2006	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
30534		He Q, Li D, Zhu Y, Tan M, Zhang D, Lin X.	Fine Mapping of Xa2, a Bacterial Blight Resistance Gene in Rice	Molecular Breeding	17(1)	1-6	2006	XA2	Xa2
30535	11370857	Wang W, Zhai W, Luo M, Jiang G, Chen X, Li X, Wing RA, Zhu L.	Chromosome landing at the bacterial blight resistance gene Xa4 locus using a deep coverage rice BAC library.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	265(1)	118-125	2001	XA4	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
30536	16614777	Jiang GH, Xia ZH, Zhou YL, Wan J, Li DY, Chen RS, Zhai WX, Zhu LH.	Testifying the rice bacterial blight resistance gene xa5 by genetic complementation and further analyzing xa5 (Xa5) in comparison with its homolog TFIIAgamma1.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	275(4)	354-366	2006	XA5	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
30537	14988479	Yokoyama R, Rose JK, Nishitani K.	A surprising diversity and abundance of xyloglucan endotransglucosylase/hydrolases in rice. Classification and expression analysis.	Plant Physiol.	134(3)	1088-1099	2004	XTH21,XTH29,XTH8,XTH2,XTH1,XTH10,XTH12,XTH13,XTH14,XTH16,XTH17,XTH18,XTH23,XTH22,XTH24,XTH25,XTH26,XTH28,XTH3,XTH4,XTH6,XTH5,XTH7,XTH20,XTH11,XTH27,XTH19,XTH15,XTH9	OsXTH21,OsXTH29,OsXTH8, OsSTA207,OsXTH2, XTR1, OsXTR1,OsXTH1,OsXTH10,OsXTH12,OsXTH13,OsXTH14,OsXTH16,OsXTH17, OsXTH8,OsXTH18,OsXTH23, XTR3, OsXTR3,OsXTH22,OsXTH24,OsXTH25,OsXTH26,OsXTH28,OsXTH3, XTR4, OsXTR4,OsXTH4,OsXTH6,OsXTH5,OsXTH7,OsXTH20, XET32,OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH27, XTH,OsXTH19,OsXTH15,OsXTH9, OsXET9, XTH1, OsXTH1
30538		Uchimiya H , Fujii S, Huang J, Fushimi T, Nishioka M,  Kim KM, Kawai Yamada M, Kurusu T, Kuchitsu K, Tagawa M.	Transgenic rice plants conferring increased tolerance to rice blast and multiple environmental stresses	Molecular Breeding	9(1)	25-31	2002	YK1	YK1
30539	15863611	Hayashi M, Takahashi H, Tamura K, Huang J, Yu LH, Kawai-Yamada M, Tezuka T, Uchimiya H.	Enhanced dihydroflavonol-4-reductase activity and NAD homeostasis leading to cell death tolerance in transgenic rice.	Proc. Natl. Acad. Sci. U.S.A.	102(19)	7020-7025	2005	YK1	YK1
30540	16528562	Ryu,H.S., Han,M., Lee,S.K., Cho,J.I., Ryoo,N., Heu,S., Lee,Y.H., Bhoo,S.H., Wang,G.L., Hahn,T.R. and Jeon,J.S.	A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response.	Plant Cell Rep.	25(8)	836-847	2006	WRKY20,WRKY89,WRKY2,WRKY1,WRKY11,WRKY51,WRKY60,WRKY53,WRKY30,WRKY19,WRKY36,WRKY41,WRKY29,WRKY65,WRKY57,WRKY9,WRKY28,WRKY62,WRKY25,WRKY94,WRKY8,WRKY96,WRKY3,PHB1,WRKY21,WRKY38,WRKY17,WRKY43,WRKY10,WRKY22,WRKY90,WRKY75,WRKY26,WRKY58,WRKY39,WRKY31,WRKY16,WRKY68,WRKY14,WRKY46,WRKY52,WRKY76,WRKY24,WRKY33,WRKY4,WRKY15,WRKY35,WRKY61,WRKY63,WRKY64,WRKY50,WRKY55,WRKY27,WRKY72,WRKY5,WRKY32,WRKY34,WRKY37,WRKY40,WRKY48,WRKY49,WRKY7,WRKY54,WRKY66,WRKY69,WRKY67,WRKY42,WRKY70,WRKY74,WRKY18,WRKY102,WRKY73,WRKY6,WRKY12,WRKY56,WRKY47,WRKY23,WRKY45,WRKY81,WRKY87,WRKY13,WRKY77	OsWRKY20,OsWRKY89,OsWRKY2,OsWRKY1, OsWRKY1v2,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY51,OsWRKY60,OsWRKY53, WRKY-53,OsWRKY30,OsWRKY19,OsWRKY36,OsWRKY41,OsWRKY29,OsWRKY65,OsWRKY57,OsWRKY9,OsWRKY28,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY25, OsWRKY44, WRKY44,OsWRKY94,OsWRKY8,OsWRKY96,OsWRKY3 ,OsPHB1,OsWRKY21,OsWRKY38,OsWRKY17,OsWRKY43,OsWRKY10,OsWRKY22,OsWRKY90,OsWRKY75,OsWRKY26, OsWRKY59,OsWRKY58,OsWRKY39,OsWRKY31,OsWRKY16,OsWRKY68,OsWRKY14,OsWRKY46, WRKY91, OsWRKY91,OsWRKY52,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY24,OsWRKY33,OsWRKY4, WRKY122, OsWRKY122,OsWRKY15,OsWRKY35,OsWRKY61, OsWRKY103, WRKY103,OsWRKY63,OsWRKY64,OsWRKY50,OsWRKY55,OsWRKY27,OsWRKY72, WRKY-72,OsWRKY5 ,OsWRKY32,OsWRKY34,OsWRKY37,OsWRKY40,OsWRKY48,OsWRKY49,OsWRKY7,OsWRKY54,OsWRKY66,OsWRKY69,OsWRKY67,OsWRKY42, WRKY-42,OsWRKY70,OsWRKY74,OsWRKY18,OsWRKY102,OsWRKY73,OsWRKY6, WRKY-6,OsWRKY12,OsWRKY56,OsWRKY47,OsWRKY23,OsWRKY45,OsWRKY81, OsWRKY33,OsWRKY87, OsSUSIBA2-like,OsWRKY13,OsWRKY77, WRKY-77
30541	12081375	Guiderdoni E, Cordero MJ, Vignols F, Garcia-Garrido JM, Lescot M, Tharreau D, Meynard D, Ferri	Inducibility by pathogen attack and developmental regulation of the rice Ltp1 gene.	Plant Mol. Biol.	49(6)	683-699	2002	LTP1	Ltp1
30543	16085936	Xu M, Zhu L, Shou H, Wu P.	A PIN1 family gene, OsPIN1, involved in auxin-dependent adventitious root emergence and tillering in rice.	Plant Cell Physiol.	46(10)	1674-81	2005	PIN10A,PIN1C,PIN1A,LRA1,PIN10B,PIN1B	PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN2, PIN2, OsLRA1,PIN3B, OsPIN3b, OsPIN10b,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
30550	17446351	Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K.	Hd3a Protein Is a Mobile Flowering Signal in Rice	Science	316(5827)	1033 - 1036	2007	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
30551	11598221	Nishi A, Nakamura Y, Tanaka N, Satoh H	Biochemical and genetic analysis of the effects of amylose-extender mutation in rice endosperm	Plant Physiol.	127(2)	459-72	2001	SSI,SBE4,SBE1,AE,SBE3	OsSSI, SSS 1, SSS1, SS1,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,ae,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
30552	17297616	Ryoo N, Yu C, Park CS, Baik MY, Park IM, Cho MH, Bhoo SH, An G, Hahn TR, Jeon JS.	Knockout of a starch synthase gene OsSSIIIa/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.).	Plant Cell Rep.	26(7)	1083-95	2007	ALK,SSIIIB,SSIIB,SSIVA,SSIVB,SSI,SSIIC,FLO5	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIb. SSIII-1,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2,OsSSI, SSS 1, SSS1, SS1,OsSSIIc, SSII-1, SSII1 ,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
30553	15232694	Hirose T, Terao T.	A comprehensive expression analysis of the starch synthase gene family in rice (Oryza sativa L.).	Planta.	220(1)	9-16	2004	ALK,SSIIIB,SSIVA,SSIIB,SSIIC,SSIVB,GBSSII,SSI,WX1,FLO5	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIb. SSIII-1,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSSIIc, SSII-1, SSII1 ,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2,GBSS2,OsSSI, SSS 1, SSS1, SS1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
30560	17804793	Nagasaki H, Itoh J, Hayashi K, Hibara K, Satoh-Nagasawa N, Nosaka M, Mukouhata M, Ashikari M, Kitano H, Matsuoka M, Nagato Y, Sato Y.	The small interfering RNA production pathway is required for shoot meristem initiation in rice.	Proc. Natl. Acad. Sci. U.S.A.	104(37)	14867-71	2007	SHO2,miR166,SHL1,SHO1,HOX9,SHL4, LF1,SHL2,PR4	sho2,miR166,shl1, sh1,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,Oshox9, OsHox9, OsHB2, HB2, OSHB2,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1 ,shl2, SHL2, sh2, OsRDR6, RDR6,OsPR4, OsPR4a, PR4a, OsPR-4
30561		S. Hortensteiner	Chlorophyll degradation during senescence	Annu. Rev. Plant Biol.	57	55-77	2006	SGR	sgr(t), sgr, OsSGR, OsSgr
30562	17204643	Armstead I, Donnison I, Aubry S, Harper J, Hortensteiner S, James C, Mani J, Moffet M, Ougham H, Roberts L, Thomas A, Weeden N, Thomas H, King I.	Cross-species identification of Mendel's I locus.	Science	315	73	2007	SGR	sgr(t), sgr, OsSGR, OsSgr
30563	17513504	Park SY, Yu JW, Park JS, Li J, Yoo SC, Lee NY, Lee SK, Jeong SW, Seo HS, Koh HJ, Jeon JS, Park YI, Paek NC.	The senescence-induced staygreen protein regulates chlorophyll degradation .	Plant Cell	19(5)	649-1664	2007	SGR	sgr(t), sgr, OsSGR, OsSgr
30564	17714430	Jiang H, Li M, Liang N, Yan H, Wei Y, Xu X, Liu J, Xu Z, Chen F, Wu G.	Molecular cloning and function analysis of the stay green gene in rice.	Plant J.	52(2)	197-209	2007	SGR	sgr(t), sgr, OsSGR, OsSgr
30565	17709752	Sato Y, Morita R, Nishimura M, Yamaguchi H, Kusaba M.	Mendel's green cotyledon gene encodes a positive regulator of the chlorophyll-degrading pathway.	Proc. Natl. Acad. Sci. U.S.A.	104	14169	2007	CHL,NYC1,SGR	OsCHL,nyc1, OsNYC1,sgr(t), sgr, OsSGR, OsSgr
30566	17675402	Nonomura K, Morohoshi A, Nakano M, Eiguchi M, Miyao A, Hirochika H, Kurata N.	A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis during sporogenesis in rice.	Plant Cell	19(8)	2583-94	2007	MEL1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c 
30567	17999151	Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X., Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z., Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.	A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members	Plant Mol. Biol.	66(1-2)	87-103	2008	HOX11,HOX13,HOX14,HOX15,HOX17,HOX18,HOX19,HOX2,HOX20,HOX22,HOX23,HOX25,HOX26,HOX27,HOX28,HOX30,HOX8,HOX3,HOX6,HOX31,HOX7,HOX29,HOX12,HOX33,HOX9,HOX1,HOX24, LF1,HB4,HOX16,HOX4,HOX5,HOX21	Oshox11, OsHox11,Oshox13, OsHox13,Oshox14, OsHox14,Oshox15, OsHox15,Oshox17, OsHox17,Oshox18, OsHox18,Oshox19, OsHox19,Oshox2, OsHox2,Oshox20, OsHox20,Oshox22, OsHox22,Oshox23, OsHox23,Oshox25, OsHox25,Oshox26,Oshox27, OsHox27,Oshox28, OsHox28,Oshox30,Oshox8,Oshox3, OsHox3,Oshox6, OsHox6,Oshox31,Oshox7, OsHox7,Oshox29, OsHox29, OSHB5,Oshox12, OsHox12,Oshox33, OsHox33, OSHB3, SIP22,Oshox9, OsHox9, OsHB2, HB2, OSHB2,Oshox1, OsHox1,Oshox24, OsHox24, OsSLI1,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1 ,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3,Oshox16, OsHox16,Oshox4, OsHox4,Oshox5, OsHox5, EIP9,Oshox21, OsHox21
30568	7915966	Akagi,H., Sakamoto,M., Shinjyo,C., Shimada,H. and Fujimura,T.	A unique sequence located downstream from the rice mitochondrial atp6 may cause male sterility	Curr. Genet.	25(1)	52-58	1994	RF1,_,_	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,ORF79, orf79,atp6, N-atp6, B-ATP6, B-atp6, atp6-1
30569	8595659	Akagi,H., Shimada,H. and Fujimura,T.	High-frequency inter-parental recombination between mitochondrial genomes of rice cybrids	Curr. Genet.	29(1)	58-65	1995	_,_,NAD5	ORF79, orf79,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,nad5
30570	12527425	Al Bitar,F., Roosens,N., Smeyers,M., Vauterin,M., Van Boxtel,J., Jacobs,M. and Homble,F.	Sequence analysis, transcriptional and posttranscriptional regulation of the rice vdac family	Biochim. Biophys. Acta	1625(1)	43-51	2003	_,_,_,_	OSVDAC3, osvdac3, OsVDAC3, VDAC3,OSVDAC4, osvdac4, OsVDAC4, VDAC4,OSVDAC2, osvdac2, OsVDAC2, VDAC2,OSVDAC1, osvdac1, OsVDAC1, VDAC1
30571	0	Attasart,P. and Sonthayanon,B.	Partial sequence of chloroplast 23S ribosomal RNA from indica rice	J. Sci. Soc. Thailand	22	89-94	1996	23S  rRNA	rrn23
30572	18197419	Bao,Y.M., Wang,J.F., Huang,J. and Zhang,H.S.	Cloning and characterization of three genes encoding Qb-SNARE proteins in rice	Mol. Genet. Genomics	279(3)	291-301	2008	NPSN11,NPSN13,NPSN12	OsNPSN11, OryzaNPSN11,OsNPSN13, OryzaNPSN13,OsNPSN12, OryzaNPSN12
30573	17380428	Bao,Y.M., Wang,J.F., Huang,J. and Zhang,H.S.	Molecular cloning and characterization of a novel SNAP25-type protein gene OsSNAP32 in rice (Oryza sativa L.)	Mol. Biol. Rep.	35(2)	145-152	2008	_	OsSNAP32, SNAP32
30574	17898986	Boisnard,A., Albar,L., Thiemele,D., Rondeau,M. and Ghesquiere,A.	Evaluation of genes from eIF4E and eIF4G multigenic families as potential candidates for partial resistance QTLs to Rice yellow mottle virus in rice	Theor. Appl. Genet.	116(1)	53-62	2007	EIF4G,EIF4E	,eIF(iso)4E
30575	18491070	Bourgis,F., Guyot,R., Gherbi,H., Tailliez,E., Amabile,I., Salse,J., Lorieux,M., Delseny,M. and Ghesquiere,A.	Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice	Theor. Appl. Genet.	117(3)	353-368	2008	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
30576	0	Chaban,C.	Phytochrome response in rice coleoptile - just a matter of auxin?	Thesis  Department of Botany, University of Freiburg, Freiburg, Germany			2002		
30577	18397370	Chaikam,V. and Karlson,D.	Functional characterization of two cold shock domain proteins from Oryza sativa	Plant Cell Environ.	31(7)	995-1006	2008	_,_	OsCSP1,OsCSP2, CPS2
30578	0	Chantarangsee,M., Tanthanuch,W., Fujimura,T., Fry,S.C. and Ketudat Cairns,J.	Molecular characterization of beta-galactosidases from germinating rice (Oryza sativa)	Plant Sci.	173(2)	118-134	2007	BGAL1,BGAL2,BGAL3,BGAL4,BGAL6,BGAL9,BGAL10,BGAL11,BGAL12,BGAL13,BGAL15,BGAL8,BGAL14,BGAL7,BGAL5	OsBgal1, beta-gal, OsBGal1,OsBgal2, OsBGal2,OsBgal3, OsBGal3,OsBgal4, OsBGal4,OsBgal6, OsBGal6,OsBgal9, OsBGal9,OsBgal10, OsBGal10,OsBgal11, OsBGal11,OsBgal12, OsBGal12,OsBgal13, OsBGal13,OsBgal15, OsBGal15,OsBgal8, OsBGal8,OsBgal14, OsBGal14, OsEnS-135,OsBgal7, OsBGal7, CARSR12,OsBgal5, OsBGal5, RMP1 
30580	0	Chen,J.		Thesis  Department of Biological Sciences, University of Cambridge, Cambridge, United Kingdom			2002		
30581	18182423	Cheung,M.Y., Zeng,N.Y., Tong,S.W., Li,F.W., Zhao,K.J., Zhang,Q., Sun,S.S. and Lam,H.M.	Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana	J. Exp. Bot.	58(15-16)	4147-4159	2007	LE	OsRHC1, RHC1, OsLE
30582	18596114	Cheung,M.Y., Zeng,N.Y., Tong,S.W., Wing-Yen Li,F., Zhao,K.J., Zhang,Q., Sai-Ming Sun,S. and Lam,H.M.	Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana	J. Exp. Bot.	59(10)	2903	2008	LE	OsRHC1, RHC1, OsLE
30583	17383991	Chhun,T., Uno,Y., Taketa,S., Azuma,T., Ichii,M., Okamoto,T. and Tsurumi,S.	Saturated humidity accelerates lateral root development in rice (Oryza sativa L.) seedlings by increasing phloem-based auxin transport	J. Exp. Bot.	58(7)	1695-1704	2007	_,_,_,_	OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3,OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4,OsLAX2, OsRAU2, OsAUX3, LAX2, RAU2, AUX3 
30584	1392595	Christopher,D.A., Kim,M. and Mullet,J.E.	A novel light-regulated promoter is conserved in cereal and dicot chloroplasts	Plant Cell	4(7)	785-798	1992	PSBD,PSBC	psbD, D2, OsPsbD1, OsPsbD2,psbC, cp43 
30585	18175928	Chujo,T., Kato,T., Yamada,K., Takai,R., Akimoto-Tomiyama,C., Minami,E., Nagamura,Y., Shibuya,N., Yasuda,M., Nakashita,H., Umemura,K., Okada,A., Okada,K., Nojiri,H. and Yamane,H.	Characterization of an elicitor-induced rice WRKY gene, OsWRKY71	Biosci. Biotechnol. Biochem.	72(1)	240-245	2008	WRKY71,_,_,_,_,_,_,_,RIXI ,_	OsWRKY71, WRKY-71,OsLP, PR-5, 14b,C10122,,,,prx66,RCB4,C10701,POD2, OsPOD2, PRX13, OSPRX13
30586	17532485	Chujo,T., Takai,R., Akimoto-Tomiyama,C., Ando,S., Minami,E., Nagamura,Y., Kaku,H., Shibuya,N., Yasuda,M., Nakashita,H., Umemura,K., Okada,A., Okada,K., Nojiri,H. and Yamane,H.	Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice	Biochim. Biophys. Acta	1769(7-8)	497-505	2007	WRKY53	OsWRKY53, WRKY-53
30588	3057446	Cote,J.C. and Wu,R.	Sequence of the chloroplast psbF gene encoding the Photosystem II 10 kDa phosphoprotein from Oryza sativa L	Nucleic Acids Res.	16(21)	10384	1988	PSBH	psbH, psbF 
30589	2922301	Cote,J.C. and Wu,R.	Sequence of the chloroplast rps14 gene encoding the chloroplast ribosomal protein S14 from rice	Nucleic Acids Res.	17(4)	1780	1989	RPS14	rps14 
30590	0	Cote,J.-C., Wu,N.-H. and Wu,R.	Nucleotide sequence of the rice chloroplast apocytochrome b6 gene (petB)	Plant Mol. Biol.	11	873-874	1988	_	petB
30591	17555605	Ding,J., Araki,H., Wang,Q., Zhang,P., Yang,S., Chen,J.Q. and Tian,D.	Highly asymmetric rice genomes	BMC Genomics	8(1)	154	2007	ASA1,_,_,_,_,_,_,_,_,_,_,TPI,PITA,PISH,PI64,IDH,_,_,_,_,_,_,PI37,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,,,,,,,,,OsIFCC043050,OsIFCC023444,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi sh, Pish, Pi-sh, Pish(t),Pi64,OsIDH,,OsIFCC009208,OsIFCC019895,OsIFSC046156,OsIFCC040819,,Pi37(t), Pi37,OsIFCC026523,OsIFCC035754,OsIFSC047991,OsIFCC045542,,,,,,,,,,,OsIFCC035229,OsIFCC035751
30592	18192436	Ding,X., Cao,Y., Huang,L., Zhao,J., Xu,C., Li,X. and Wang,S.	Activation of the Indole-3-Acetic Acid-Amido Synthetase GH3-8 Suppresses Expansin Expression and Promotes Salicylate- and Jasmonate-Independent Basal Immunity in Rice	Plant Cell	20(1)	228-240	2008	GH3-8	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2
30593	0	Ding,Z.-J., Wang,T., Chong,K. and Bai,S.-N.	Isolation and characterization of OsDMC1, the rice homologue of the yeast DMC1 gene essential for meiosis	Sex. Plant Reprod.	13	285-288	2001	DMC1A	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
30594	0	Doyle,J.A., Donoghue,M.J. and Zimmer,E.A.	Integration of morphological and ribosomal RNA data on the origin of angiosperms	Ann. Mo. Bot. Gard.	81(3)	419-450	1994	28S rRNA,18S rRNA	28S rRNA,18S rRNA
30595	18293011	Fujino,K., Matsuda,Y., Ozawa,K., Nishimura,T., Koshiba,T., Fraaije,M.W. and Sekiguchi,H.	NARROW LEAF 7 controls leaf shape mediated by auxin in rice	Mol. Genet. Genomics	279(5)	499-507	2008	COW1,YUCCA9,YUCCA10,YUCCA11,YUCCA14,YUCCA12,YUCCA13,YUCCA6,YUCCA7,YUCCA3,YUCCA4,YUCCA5,YUCCA2,YUCCA1	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsYUCCA9, OsYUC9, YUC9,OsYUCCA10, OsYUC10,OsYUCCA11, OsYUC11,OsYUCCA14, OsYUC14,OsYUCCA12, OsYUC12,OsYUCCA13, OsYUC13,OsYUCCA6, OsYUC6,OsYUCCA7, OsYUC7,OsYUCCA3, OsYUC3,OsYUCCA4, OsYUC4, YUC4,OsYUCCA5, OsYUC5, YUC5,OsYUCCA2, OsYUC2,OsYUCCA1, OsYUC1
30596	18719107	Fujino,K., Sekiguchi,H., Matsuda,Y., Sugimoto,K., Ono,K. and Yano,M.	Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low temperature germinability in rice	Proc. Natl. Acad. Sci. U.S.A.	105(34)	12623-12628	2008	qLTG-3-1(t)	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5
30597	0	Fukuda,T., Osaki,M., Shinano,T. and Wasaki,J.	Cloning and characterization of two secreted acid phosphatases from rice calli	In Horst,W.J., Schenk,M.K. and etc. (Eds.); PLANT NUTRITION - FOOD SECURITY AND SUSTAINABILITY OF AGRO-SYSMS THROUGH BASIC AND APPLIED RESEARCH  Kluwer Academic Publishers, The Netherlands		34-35	2001		
30598	0	Furukawa,T., Kimura,S., Ishibashi,T., Hashimoto,J. and Sakaguchi,K.	A plant homologue of 36 kDa subunit of replication factor C: molecular cloning and characterization	Plant Sci.	161(1)	99-106	2001	_	OsRFC3, RFC3
30599	0	Gao,Z., Zeng,D., Cui,X., Zhou,Y., Yan,M., Huang,D., Li,J. and Qian,Q.	Map-based cloning of the ALK gene, which controls the gelatinization temperature of rice	Sci. China, C, Life Sciences	46	661-668	2003	ALK	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
30600	18365248	Ge,L.F., Chao,D.Y., Shi,M., Zhu,M.Z., Gao,J.P. and Lin,H.X.	Overexpression of the trehalose-6-phosphate phosphatase gene OsTPP1 confers stress tolerance in rice and results in the activation of stress responsive genes	Planta.	228(1)	191-201	2008	TPP1	OsTPP1, OsTPS
30601	21665625	Ge,S., Li,A., Lu,B.-R., Zhang,S.-Z. and Hong,D.-Y.	A phylogeny of the rice tribe Oryzeae (Poaceae) based on matK sequence data	Am. J. Bot.	89(12)	1967-1972	2002	_	matK, ORF542 
30603	18395997	Gu,Z., Ma,B., Jiang,Y., Chen,Z., Su,X. and Zhang,H.	Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses	Gene	415(1-2)	1-12	2008	CBL8,CBL2,CBL5,CBL1,CBL3,CBL4,CBL7,CBL9,CBL6,CBL10	OsCBL8,OsCBL2,OsCBL5,OsCBL1, Os-CBL1,OsCBL3,OsCBL4, SOS3, OsSOS3,OsCBL7,OsCBL9,OsCBL6,OsCBL10
30604	0	Hayakawa,T., Sakai,T., Ishiyama,K., Hirose,N., Nakajima,H., Takezawa,M., Naito,K., Hino-Nakayama,M., Akagawa,T., Goto,S. and Yamaya,T.	Organization and structure of ferredoxin-dependent glutamate synthase gene and intracellular localization of the enzyme protein in rice plants	Plant Biotechnol.	20(1)	43-55	2003	GLT1,ABC1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
30605		Hirabayashi,S., Matsushita,Y., Sato,M., Oh-i,R., Kasahara,M., Abe,H. and Nyunoya,H.	Two Proton Pump Interactors Identified from a Direct Phosphorylation Screening of a Rice cDNA Library by Using a Recombinant BRI1 Receptor Kinase	Plant Biotechnol.	21(1)	35-45	2004	D61,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,BZIP59,C3H13 ,_,_,_,_,_,YSS2	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,BIP115, OsRH18,BIP124,BIP103,BIP112,BIP135,BIP127,BIP107,BIP109,BIP117,BIP118,BIP119,BIP121,BIP128,BIP130,BIP132,BIP120,BIP116,BIP111,BIP126,BIP113,BIP133,BIP104,BIP102,BIP101,BIP108,BIP131,BIP129,OsbZIP59, BIP125,OsC3H13, BIP105,OsFKBP58, OsFKBP53a, BIP122,OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28,BIP123, RPL24a, OsRPL24a,BIP134, OsBIP134,BIP106,OsNDPK2, NDPK2, BIP114
30606	12764611	Hirouchi,T., Nakajima,S., Najrana,T., Tanaka,M., Matsunaga,T., Hidema,J., Teranishi,M., Fujino,T., Kumagai,T. and Yamamoto,K.	A gene for a Class II DNA photolyase from Oryza sativa: cloning of the cDNA by dilution-amplification	Mol. Genet. Genomics	269(4)	508-516	2003	_	qUVR-10, OsPHR, OsCPD, CPD
30607	0	Hou,F.-Y., Huang,J., Yu,S.-L. and Zhang,H.-S.	The 6-phosphogluconate Dehydrogenase Genes Are Responsive to Abiotic Stresses in Rice	J. Integr. Plant Biol.	49(5)	655-663	2007	_,_,_,_	OsG6PDH3, OsG6PDH2,OsG6PDH2, OsG6PDH1, OsG6PDH,Os6PGDH2,Os6PGDH1, Os6PGDH
30608	8589847	Howland,D.E. and Hewitt,G.M.	Phylogeny of the Coleoptera based on mitochondrial cytochrome oxidase I sequence data	Insect Mol. Biol.	4(3)	203-215	1995		
30609	8552712	Hsing,Y.-I.C., Tsao,C.W., Hsieh,J.-S., Chen,Z.-Y., Shu,T.-F. and Chow,T.-Y.	A Rice Early Embryogenesis-specific Enolase cDNA (Accession No. U09450) (PGR95-084)	Plant Physiol.	109(3)	1125	1995	_	OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4
30610	18622033	Huang,C.L., Hwang,S.Y., Chiang,Y.C. and Lin,T.P.	Molecular Evolution of Pi-ta Gene Resistance to Rice Blast in Wild Rice (Oryza rufipogon)	Genetics	179(3)	1527-1538	2008	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
30611	0	Huang,H.J.		Thesis  Department of Biology, National Cheng-Kung University, Tainan, Taiwan			2001		
30612	0	Huang,J., Wang,M., Jiang,Y., Wang,Q., Huang,X. and Zhang,H.	Stress repressive expression of rice SRZ1 and characterization of plant SRZ gene family	Plant Sci.	174(2)	227-235	2008	_,_,_,_	OsZFP1, SRZ3,SRZ3,SRZ4,SRZ1
30613	18588956	Huang,J., Wang,M.M., Jiang,Y., Bao,Y.M., Huang,X., Sun,H., Xu,D.Q., Lan,H.X. and Zhang,H.S.	Expression analysis of rice A20/AN1-type zinc finger genes and characterization of ZFP177 that contributes to temperature stress tolerance	Gene	420(2)	135-144	2008	ZFP157,ZFP173,ZFP176,ZFP181,ZFP177	,,,,OsSAP9, SAP9, ZFP33
30614	17434609	Huang,J., Yang,X., Wang,M.M., Tang,H.J., Ding,L.Y., Shen,Y. and Zhang,H.S.	A novel rice C2H2-type zinc finger protein lacking DLN-box/EAR-motif plays a role in salt tolerance	Biochim. Biophys. Acta	1769(4)	220-227	2007	_,ZFP182	ZFP182,ZFP182/ZOS3-21, ZOS3-21
30615	18054244	Huang,Y.W., Tsay,W.S., Chen,C.C., Lin,C.W. and Huang,H.J.	Increased expression of the rice C-type cyclin-dependent protein kinase gene, Orysa;CDKC;1, in response to salt stress	Plant Physiol. Biochem.	46(1)	71-81	2008	CDKC;1,CDC2-1,CDKB2;1 ,CDKC;2	CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,CDKC;2, Orysa;CDKC;2, Orysa;CDKC;1, CDKC;1, OsCDKC1, OsCDKC;1
30616	17415667	Hur,Y.J., Lee,H.G., Jeon,E.J., Lee,Y.Y., Nam,M.H., Yi,G., Eun,M.Y., Nam,J., Lee,J.H. and Kim,D.H.	A phosphate starvation-induced acid phosphatase from Oryza sativa: phosphate regulation and transgenic expression	Biotechnol. Lett.	29(5)	829-835	2007	_	OsACP1, ACP1
30617	17666027	Ikeda,K., Ito,M., Nagasawa,N., Kyozuka,J. and Nagato,Y.	Rice ABERRANT PANICLE ORGANIZATION 1, encoding an F-box protein, regulates meristem fate	Plant J.	51(6)	1030-1040	2007	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393
30618	0	Ito,H., Kimizuka,F., Ohbayashi,A., Matsui,H., Honma,M., Shinmyo,A., Ohashi,Y., Rodriguez,R.L. and Caplan,A.B.	Molecular cloning and characterization of two complementary DNAs encoding putative peroxidases from rice (Oryza sativa L.) shoots	Plant Cell Rep.	13(7)	361-366	1994	POXA,POXN	poxA, prx126, prxRPA, RPA,poxN, prx38, prxRPN, RPN, poxN/PRX38
30619	17531407	Josefsen,L., Bohn,L., Sorensen,M.B. and Rasmussen,S.K.	Characterization of a multifunctional inositol phosphate kinase from rice and barley belonging to the ATP-grasp superfamily	Gene	397(1-2)	114-25	2007	IPK	OsIpk
30620	0	Jwa,N.-S., Park,S.-G., Park,C.-H., Kim,S.-O., Ahn,I.-P., Park,S.-Y., Yoon,C.-H. and Lee,Y.-H.	Cloning and expression of a rice cDNA encoding a Lls1 homolog of maize	Plant Pathol. J.	16(3)	151-155	2000	BLM,YGL10	blm (=bl2),CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
30621	2139209	Kaleikau,E.K., Andre,C.P. and Walbot,V.	Sequence of the F0-atpase proteolipid (atp9) gene from rice mitochondria	Nucleic Acids Res.	18(2)	370	1990	_	atp9, RMtATP9, aatp9
30622	2158075	Kaleikau,E.K., Andre,C.P. and Walbot,V.	Sequence of the rice mitochondrial gene for cytochrome oxidase subunit 3	Nucleic Acids Res.	18(2)	371	1990	_	cox3, coxIII, cox3a, cox3b, cox3c
30623	1282087	Kaleikau,E.K., Andre,C.P. and Walbot,V.	Structure and expression of the rice mitochondrial apocytochrome b gene (cob-1) and pseudogene (cob-2)	Curr. Genet.	22(6)	463-470	1992	_,_	cob-2,cob, cob-1, cob-like
30624	17376611	Kang,S.G., Jeong,H.K., Lee,E. and Natarajan,S.	Characterization of a lipoate-protein ligase A gene of rice (Oryza sativa L.)	Gene	393(1-2)	53-61	2007	_	OsLPLA
30625	18205020	Kanneganti,V. and Gupta,A.K.	Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice	Plant Mol. Biol.	66(5)	445-462	2008	SAP8	Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1
30626	1588598	Karlovsky,P. and Fartmann,B.	Genetic code and phylogenetic origin of oomycetous mitochondria	J. Mol. Evol.	34(3)	254-258	1992	_	cox3, coxIII, cox3a, cox3b, cox3c
30627	8675024	Katayama,M., Sakai,Y., Okamoto,S., Ihara,F., Nihira,T. and Yamada,Y.	Gene organization in the ada-rplL region of Streptomyces virginiae	Gene	171(1)	135-136	1996		
30628	0	Kathiresan,A., Khush,G.S. and Bennett,J.	Two rice DMC1 genes are differentially expressed during meiosis and during haploid and diploid mitosis	Sex. Plant Reprod.	14	257-267	2002	DMC1B,DMC1A	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
30629	0	Kato,A., Shimazaki,T., Nishi,R. and Uchimiya,H.	Isolation and characterization of a rice cDNA homologous to the Xenopus maternal G10 protein gene	Thesis  Nagoya City University Medical School			1992		
30630	0	Kim,Y.-K., Cha,Y.-K., Jun,H.-Y., Kim,J.-D., Choi,J.-S., Kim,H.-R. and Han,I.-S.	Nucleotide Sequence of a cDNA (OstubG2) (Accession No. AF036957) Encoding a gamma-Tubulin in the Rice Plant (PGR99-186)	Plant Physiol.	121(4)	1383	1999		
30631	17991631	Kinoshita,A., Nakamura,Y., Sasaki,E., Kyozuka,J., Fukuda,H. and Sawa,S.	Gain-of-Function Phenotypes of Chemically Synthetic CLAVATA3/ESR-Related (CLE) Peptides in Arabidopsis thaliana and Oryza sativa	Plant Cell Physiol.	48(12)	1821-1825	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsCLE508, CLE508,FCP1, FCP1/Os CLE402, Os CLE402, OsCLE402,OsCLE501, CLE501,OsCLE502, CLE502,OsCLE506, CLE506,OsCLE504, CLE504,OsCLE505, CLE505,OsCLE206, CLE206,OsCLE104, CLE104,OsCLE503, CLE503,OsCLE101, CLE101,OsCLE301, CLE301,FOS1, OsCLE202, CLE202,OsCLE403, CLE403,OsCLE204, CLE204,OsCLE303, CLE303,OsCLE302, CLE302,OsCLE603, CLE603,OsCLE103, CLE103,OsCLE404, CLE404,OsCLE201, CLE201,OsCLE205, CLE205,OsCLE102, CLE102,OsCLE507, CLE507,OsCLE306, CLE306,OsCLE305, CLE305,OsCLE304, CLE304,OsCLE801, CLE801,OsCLE401, CLE401,OsCLE203, CLE203,OsCLE601, CLE601,OsCLE602, CLE602,OsCLE509, CLE509,OsCLE701, CLE701
30632	0	Kitaura,K., Nakazaki,T., Yoshimichi,F. and Ikehashi,H.	Polymorphism and linked markers of S-type thioredoxin-like genes in rice(Oriza sativa L.)	Breeding Science	48(Suppl. 2)	113	1998	STRN1	S-trn1(t)*, Strn-l(t)*, Strn, S-trn-l
30633	8806415	Kubo,N., Ozawa,K., Hino,T. and Kadowaki,K.	A ribosomal protein L2 gene is transcribed, spliced, and edited at one site in rice mitochondria	Plant Mol. Biol.	31(4)	853-862	1996	RPL2,RPS19	rpl2,rps19
30634	0	Kumamaru,T., Uemura,U., Takemoto,Y., Ogawa,M. and Satoh,H.	High-resolution mapping of glup3 gene accumulating high amount of glutelin precursor	RGN	19	62-63	2002	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
30635	17416733	Kusaba,M., Ito,H., Morita,R., Iida,S., Sato,Y., Fujimoto,M., Kawasaki,S., Tanaka,R., Hirochika,H., Nishimura,M. and Tanaka,A.	Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence	Plant Cell	19(4)	1362-1375	2007	NOL,_,NYC1	nol, NOL1, OsNOL, OsNOL1,,nyc1, OsNYC1
30636	17852346	Lee,D.H. and Kang,S.G.	Characterization of phosphatidylinositol-glycan biosynthesis protein class F gene in rice	DNA Seq.	19(3)	282-290	2008	_	PIGF, PIG-F, OsPIG-F
30637	16792693	Lee,J.R., Jang,H.H., Park,J.H., Jung,J.H., Lee,S.S., Park,S.K., Chi,Y.H., Moon,J.C., Lee,Y.M., Kim,S.Y., Kim,J.Y., Yun,D.J., Cho,M.J., Lee,K.O. and Lee,S.Y.	Cloning of two splice variants of the rice PTS1 receptor, OsPex5pL and OsPex5pS, and their functional characterization using pex5-deficient yeast and Arabidopsis	Plant J.	47(3)	457-466	2006	PEX5,PEX7,PEX14	OsPEX5, OsPex5pL, OsPex5pS, OsPex5L, OsPex5S, OsPex5p,OsPex7, OsPex7p,OsPex14, OsPex14p, OsPEX14
30638	18162592	Li,F., Vallabhaneni,R. and Wurtzel,E.T.	PSY3, a New Member of the Phytoene Synthase Gene Family Conserved in the Poaceae and Regulator of Abiotic Stress-Induced Root Carotenogenesis	Plant Physiol.	146(3)	1333-1345	2008	PSY1,_,PSY2	PSY1, OsPSY1 ,OsPSY, PSY, OsPSY3, PSY3,PSY2, OsPSY2
30639	0	Li,G., Zhan,S. and Cao,K.	Rice Lipid Transfer Protein Gene	Thesis  Biochemistry, Fudan University			1995		
30640	0	Li,J.C., Guo,J.B., Xu,W.Z. and Ma,M.	RNA Interference-mediated Silencing of Phytochelatin Synthase Gene Reduce Cadmium Accumulation in Rice Seeds	J. Integr. Plant Biol.	49(7)	1032-1037	2007	PCS1	OsPCS1, OsPCS2, PCS2 
30641	17947408	Lin,F., Chen,S., Que,Z., Wang,L., Liu,X. and Pan,Q.	The Blast Resistance Gene Pi37 Encodes a Nucleotide Binding Site-Leucine-Rich Repeat Protein and Is a Member of a Resistance Gene Cluster on Rice Chromosome 1	Genetics	177(3)	1871-1880	2007	PI37,PI36,PI9,PIB,PIZ,PIZT	Pi37(t), Pi37,Pi36(t), Pi36,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
30642	0	Lin,R., Zhao,W., Meng,X. and Peng,Y.L.	Molecular cloning and characterization of a rice gene encoding AP2/EREBP-type transcription factor and its expression in response to infection with blast fungus and abiotic stresses	Physiol. Mol. Plant Pathol.	70(1-3)	60-68	2007	ERF72	OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2
30644	1617739	Liu,A.W., Narayanan,K.K., Andre,C.P., Kaleikau,E.K. and Walbot,V.	Co-transcription of orf25 and coxIII in rice mitochondria	Curr. Genet.	21(6)	507-513	1992	_,_	orf25, atp4,cox3, coxIII, cox3a, cox3b, cox3c
30645	17905898	Liu,B., Chen,Z., Song,X., Liu,C., Cui,X., Zhao,X., Fang,J., Xu,W., Zhang,H., Wang,X., Chu,C., Deng,X., Xue,Y. and Cao,X.	Oryza sativa Dicer-like4 Reveals a Key Role for Small Interfering RNA Silencing in Plant Development	Plant Cell	19(9)	2705-2718	2007	SHO1,TAS3	sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,TAS3
30646	18037265	Liu,F., Xu,W., Tan,L., Xue,Y., Sun,C. and Su,Z.	Case study for identification of potentially indel-caused alternative expression isoforms in the rice subspecies japonica and indica by integrative genome analysis	Genomics	91(2)	186-194	2008	_	prx90
30648	16919842	Liu,X., Bai,X., Wang,X. and Chu,C.	OsWRKY71, a rice transcription factor, is involved in rice defense response	J. Plant Physiol.	164(8)	969-979	2007	PR1B,WRKY71	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsWRKY71, WRKY-71
30649	17507669	Liu,X., Lin,F., Wang,L. and Pan,Q.	The in silico map-based cloning of pi36, a rice coiled-coil nucleotide-binding site leucine-rich repeat gene that confers race-specific resistance to the blast fungus	Genetics	176(4)	2541-2549	2007	PI36	Pi36(t), Pi36
30650	17999149	Li,X., Tan,L., Huang,H., Zhu,Z., Li,C., Hu,S. and Sun,C.	Construction of a bacterial artificial chromosome (BAC) library of common wild rice (Oryza rufipogon Griff.) for map-based cloning of genes selected during the domestication of rice	Biotechnol. Lett.	30(3)	555-561	2008	_,_,_,SH4	LGH1,Rf,SP,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
30651	16766658	Londo,J.P., Chiang,Y.C., Hung,K.H., Chiang,T.Y. and Schaal,B.A.	Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa	Proc. Natl. Acad. Sci. U.S.A.	103(25)	9578-9583	2006	_,_,_	,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,Vatp, OsSTA154
30652	17625566	Ma,J.F., Yamaji,N., Mitani,N., Tamai,K., Konishi,S., Fujiwara,T., Katsuhara,M. and Yano,M.	An efflux transporter of silicon in rice	Nature	448(7150)	209-212	2007	LSI2,LSI1	Lsi2, SIET1, OsLsi2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
30654	15653800	Mashiguchi,K., Yamaguchi,I. and Suzuki,Y.	Isolation and identification of glycosylphosphatidylinositol-anchored arabinogalactan proteins and novel beta-glucosyl Yariv-reactive proteins from seeds of rice (Oryza sativa)	Plant Cell Physiol.	45(12)	1817-1829	2004	_,_,AGP14,AGP19,AGP1,ENODL1	OsAGPEP3,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsAGP14, OsAGPEP2,OsAGP19, OsAGPEP1,OsAGP1,OsENODL1, OsELA1, ELA1
30655	17947413	Mather,K.A., Caicedo,A.L., Polato,N.R., Olsen,K.M., McCouch,S. and Purugganan,M.D.	The Extent of Linkage Disequilibrium in Rice (Oryza sativa L.)	Genetics	177(4)	2223-2232	2007	WRKY21	OsWRKY21
30657	0	Meng,X.-B., Zhao,W.-S., Lin,R.-M., Wang,M. and Peng,Y.-L.	Identification of a novel rice bZIP-type transcription factor gene, OsbZIP1 involved in response to infection of Magnaporthe grisea	Plant Mol. Biol.	23(3)	301a-301m	2005	BZIP28	OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08
30658	18305920	Mikami,I., Uwatoko,N., Ikeda,Y., Yamaguchi,J., Hirano,H.Y., Suzuki,Y. and Sano,Y.	Allelic diversification at the wx locus in landraces of Asian rice	Theor. Appl. Genet.	116(7)	979-989	2008	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30659	8790446	Miyata,S., Kanazawa,A., Tsutsumi,N., Sano,Y. and Hirai,A.	Mitochondrial plasmid-like DNAs of the B1 family in the genus Oryza: sequence heterogeneity and evolution	Jpn. J. Genet.	70(6)	675-685	1995	_,_,_	M2,M3,M1
30660	3240862	Moon,E. and Wu,R.	Organization and nucleotide sequence of genes at both junctions between the two inverted repeats and the large single-copy region in the rice chloroplast genome	Gene	70(1)	1-12	1988	RPL23,_,RPS19,RPL2,_,RPL22,_,_,RPL23,RPL2,PSBA,_	rpl23,trnI(CAU), trnI, trnI-CAU,rps19,rpl2,trnH(GUG), trnH, trnH-GUG,rpl22,trnI(CAU), trnI, trnI-CAU,trnH(GUG), trnH, trnH-GUG,rpl23,rpl2,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,rps19
30661	3029686	Moon,E., Kao,T.H. and Wu,R.	Rice chloroplast DNA molecules are heterogeneous as revealed by DNA sequences of a cluster of genes	Nucleic Acids Res.	15(2)	611-630	1987	RBCL	rbcL, rbcA, OsrbcL
30662	2954029	Moon,E., Kao,T.H. and Wu,R.	Sequence of the chloroplast-encoded atpB-atpE-trnM gene clusters from rice	Nucleic Acids Res.	15(10)	4358-4359	1987	_,_,_,_,_,_	atpE,atpE.p,atpB.p,atpB.p,atpE.p,atpB, AtpB, atpcf1, ATPbeta
30663	0	Moon,E.P., Lee,K.W., Lee,J.S., Choi,Y.D. and Kim,H.J.	Isolation and Characterization of cDNAs for Ribulose Bisphosphate Carboxylase Multigene Family in Rice (Oryza)	Mol. Cells	1	287-294	1991	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
30664	17675406	Nakagawa,Y., Hanaoka,H., Kobayashi,M., Miyoshi,K., Miwa,K. and Fujiwara,T.	Cell-Type Specificity of the Expression of Os BOR1, a Rice Efflux Boron Transporter Gene, Is Regulated in Response to Boron Availability for Efficient Boron Uptake and Xylem Loading	Plant Cell	19(8)	2624-2635	2007	BOR3,BOR4,BOR2,BOR1	OsBOR3,OsBOR4,OsBOR2,OsBOR1
30665	0	Nakazaki,T., Misawa,T., Horibata,A., Yamahira,S., Okumoto,Y., Yamagata,H. and Tanisaka,T.	Insertion-polymorphism of transposable-element-like fragment within the region spanning the mutable slender-glume gene slg	Breeding Research	3	116	2001	SRT,SLG	Srt,slg, Rurm1, Urm1
30666	0	Nakazaki,T., Tomimoto,Y., Ikehashi,H., Kowyama,Y., Yano,M., Yamamoto,K. and Sasaki,T.	A novel chitinase in rice (Oryza sativa L.) detected from husk proteins and its gene locus	Breeding Science	47(4)	363-369	1997	CHT4	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3
30667	8437578	Nakazono,M. and Hirai,A.	Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice	Mol. Gen. Genet.	236(2-3)	341-346	1993	RPOC1,NDHK,_,_,_,_,_,_,_,RPS4,RPL23,_,RPL14,_,_,RPOC1,_,NDHG,_,_,_,_,RPS19,_,NDHJ,_,_,CLPP.P,_,_,_,RPL2,RPL23.P,RPS19.P,_,_,RPOB,_,_,_,_,_,RPL14.P,NDHE,NDHG,RPS4,RPOC2.P,_,_,_,RPOB,RBCL,_,RPOC2,RPL2,CLPP,NDHE,_,_,_,_,RPOB.P,_,_,_,_,_	rpoC1,ndhK,trnM,atpE,atpH,trnV, trnV(UAC), trnV-UAC,trnR(TCT), trnR,atpE,trnI(CAU), trnI, trnI-CAU,rps4 ,rpl23,ORF85,rpl14,petB,atpA,rpoC1, RPO beta', RPObeta',trnR(UCU), trnR, trnR-UCU,ndhG,trnS(GGA), trnS, trnS-GGA,trnV, trnV(GAC), trnV-GAC,trnN(GUU), trnN, trnN-GUU,trnI, pseudo-trnI,rps19,trnH(GUG), trnH, trnH-GUG,ORF159, ndhJ,trnP(UGG), trnP, trnP-UGG,trnC, trnC(GCA), trnC-GCA,ClpP, ClpP.p,trnM, trnM(CAU), trnM-CAU,trnW(CCA), trnW, trnW-CCA,ORF85,rpl2,rpl23.p,rps19, rps19.p,atpB,rbcL,rpoB,trnL,atpA, atpA.p,trnV(GAC), trnV,petB, petB.p,atpH, atpH.p,rpl14, rpl14.p,ndhE,ndhG,rps4,rpoC2.p, rpoC2,ORF159,trnL(UAA), trnL, trnL-UAA,trnF(GAA), trnF, trnF-GAA,rpoB, RpoB, Rpobeta,rbcL, rbcA, OsrbcL,atpB, AtpB, atpcf1, ATPbeta,rpoC2, RPO beta", RPObeta",rpl2,ORF216, ClpP, clpP,ndhE,trnH(GTG), trnH,trnW(CCA), trnW,trnP(TGG), trnP,ndhK,rpoB.p,trnN(GTT), trnN,trnV.p, pseudo-trnV, trnV,trnC(GCA), trnC,trnS(GGA), trnS,trnF(GAA), trnF
30668	8625419	Nakazono,M., Ishikawa,M., Yoshida,K.T., Tsutsumi,N. and Hirai,A.	Multiple initiation sites for transcription of a gene for subunit 1 of F1-ATPase (atp1) in rice mitochondria	Curr. Genet.	29(5)	417-422	1996	ATP	ATP*(atp1), ATPX, atp1
30669	8625418	Nakazono,M., Ito,Y., Tsutsumi,N. and Hirai,A.	The gene for a subunit of an ABC-type heme transporter is transcribed together with the gene for subunit 6 of NADH dehydrogenase in rice mitochondria	Curr. Genet.	29(5)	412-416	1996	NAD6,_,_	nad6,ccmC, orf240,trnI, pseudo-trnI
30670	7509206	Nakazono,M., Kanno,A., Tsutsumi,N. and Hirai,A.	Palindromic repeated sequences (PRSs) in the mitochondrial genome of rice: evidence for their insertion after divergence of the genus Oryza from the other Gramineae	Plant Mol. Biol.	24(2)	273-281	1994	RPS3,_	rps3,trnN(GTT), trnN
30671	0	Nakazono,M., Tsutsumi,N. and Hirai,A.	The CRTA motif is present in the promoters of mitochondrial genes of rice	Plant Sci.	105	227-234	1995	RPS2,_,RPS12,RPL16,NAD3,26S  rRNA,RPS3,18S  rRNA,_	rps2, orf483 ,trnfM(CAT), trnfM,rps12,rpl16, pseudo-rpl16,nad3,rrn26,rps3,rrn18,atp9, RMtATP9, aatp9
30672	7599319	Nakazono,M., Tsutsumi,N., Sugiura,M. and Hirai,A.	A small repeated sequence contains the transcription initiation sites for both trnfM and rrn26 in rice mitochondria	Plant Mol. Biol.	28(2)	343-346	1995	_,26S  rRNA	trnfM(CAT), trnfM,rrn26
30673	16987950	Nardmann,J. and Werr,W.	The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution	Mol. Biol. Evol.	23(12)	2492-2504	2006	WOX5,NAL2,FON1,WOX4,WOX8,WOX9,WOX1,WOX10,QHB,WOX9C	OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsFON1, fon1, OsRLCK219, RLCK219,OsWOX4, Os WOX4,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,OsWOX9, DWL1,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX9C, DWL2
30674	17768306	Nardmann,J., Zimmermann,R., Durantini,D., Kranz,E. and Werr,W.	WOX Gene Phylogeny in Poaceae: A Comparative Approach Addressing Leaf and Embryo Development	Mol. Biol. Evol.	24(11)	2474-2484	2007	NAL2,WOX4,WOX10,WOX8,QHB,WOX5,GL1,WOX9,WOX9C	nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsWOX4, Os WOX4,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,OsWOX9, DWL1,OsWOX9C, DWL2
30675	0	Nishizawa,Y. and Hirai,A.	Nucleotide sequence and expression of the gene for the large subunit of rice ribulose 1, 5-bisphosphate carboxylase	Jpn. J. Genet.	62	389-395	1987	RBCL	rbcL, rbcA, OsrbcL
30676	2534354	Nishizawa,Y. and Hirai,A.	The nucleotide sequences and expression of genes for the beta and epsilon subunits of ATP synthase from rice (Oryza sativa L.)	Jpn. J. Genet.	64(3)	223-229	1989	_,_	atpE,atpB, AtpB, atpcf1, ATPbeta
30677	18193402	Nonoue,Y., Fujino,K., Hirayama,Y., Yamanouchi,U., Lin,S.Y. and Yano,M.	Detection of quantitative trait loci controlling extremely early heading in rice	Theor. Appl. Genet.	116(5)	715-722	2008	HD4,SE1,HD5	Hd4(t), qHD4(t), qHD4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
30678	0	Nugroho,S. and Jefferson,R.A.	The identification of rice O. sativa GSK-3 related protein kinase gene family using the yeast S. cerevisiae meiotic regulatory gene RIMM11 as probe	Ann Bogor	7	39-55	2001		
30679	18308732	Ogo,Y., Kobayashi,T., Nakanishi Itai,R., Nakanishi,H., Kakei,Y., Takahashi,M., Toki,S., Mori,S. and Nishizawa,N.K.	A Novel NAC Transcription Factor, IDEF2, That Recognizes the Iron Deficiency-responsive Element 2 Regulates the Genes Involved in Iron Homeostasis in Plants	J. Biol. Chem.	283(19)	13407-13417	2008	NAC36	ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2
30680	17634747	Okada,A., Shimizu,T., Okada,K., Kuzuyama,T., Koga,J., Shibuya,N., Nojiri,H. and Yamane,H.	Elicitor induced activation of the methylerythritol phosphate pathway toward phytoalexins biosynthesis in rice	Plant Mol. Biol.	65(1-2)	177-187	2007	_,DXS2,_,KS7,DXS1,_,_,DXS3,CPS2,_,CPS4,_	OsHDR, HDR, OsIspH, IspH,OsDXS2, dxs2,OsCMS, CMS, OsIspD, IspD,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsMCS, MCS, IspF, OsIspF,OsCMK, CMK, OsIspE, IspE,OsDXS, OsDXS3, dxs3,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsDXR, DXR, OsIspC, IspC,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsHDS, HDS, OsIspG, IspG
30681	17893735	Onishi,K., Takagi,K., Kontani,M., Tanaka,T. and Sano,Y.	Different patterns of genealogical relationships found in the two major QTLs causing reduction of seed shattering during rice domestication	Genome	50(8)	757-766	2007	qSH3,SH4,qSH1	,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,qSH1, qsh1, qSH-1
30682	0	Park,S. and Thornburg,R.W.	Characterization of UMP kinase cDNAs from rice (Accession Nos. AF187062 and AF187063) (PGR 99-174)	Plant Physiol.	121(4)	1383	1999		
30683	17913295	Peng,L.T., Shi,Z.Y., Li,L., Shen,G.Z. and Zhang,J.L.	Overexpression of transcription factor OsLFL1 delays flowering time in Oryza sativa	J. Plant Physiol.	165(8)	876-885	2008	LFL2,LFL1	OsLFL2,OsLFL1, OsSTA29, STA29
30684	0	Peng,L.T.	The functional analysis of gamma-glutamylcysteine synthetase gene in Oryza sativa	Thesis  Institute of Plant Physiology and Ecology, SIBS, CAS, Shanghai, China			2003		
30685	18562767	Qi,J., Qian,Q., Bu,Q., Li,S., Chen,Q., Sun,J., Liang,W., Zhou,Y., Chu,C., Li,X., Ren,F., Palme,K., Zhao,B., Chen,J., Chen,M. and Li,C.	Mutation of the Rice NARROW LEAF1 Gene, Which Encodes a Novel Protein, Affects Vein Patterning and Polar Auxin Transport	Plant Physiol.	147(4)	1947-1959	2008	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4
30686	17506327	Qiu,D., Xiao,J., Ding,X., Xiong,M., Cai,M., Cao,Y., Li,X., Xu,C. and Wang,S.	OsWRKY13 mediates rice disease resistance by regulating defense-related genes in salicylate- and jasmonate-dependent signaling	Mol. Plant Microbe Interact.	20(5)	492-499	2007	WRKY13,PR1A,_,_,NH1,PAL1,PR10A,_,CHS,AOS2,_	OsWRKY13,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,ICS1, OsICS1, OsICS, ICS,OsEDS1, EDS1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,PAD4, OsPAD4,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsAOS2, CYP74A2, OsAOS, OsAOS1,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
30688	18467323	Qu,L.Q., Xing,Y.P., Liu,W.X., Xu,X.P. and Song,Y.R.	Expression pattern and activity of six glutelin gene promoters in transgenic rice	J. Exp. Bot.	59(9)	2417-2424	2008	GLUA2,GLUA1,GLUB3.P,GLUA3,GLUB4,GLUC	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,GluB-3.P, GluB-3,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,GluB4, GluB-5,GluC, OsEnS-36, EnS-36, GLU2.2
30689	0	Raghuvanshi,S., Dhingra,A., Grover,M., Kelkar,A., Bansal,K.C., Sharma,A.K., Khurana,J.P., Maheshwari,S.C. and Tyagi,A.K.	Regulation of gene expression and transformation in plastids of rice	(in) GENERAL MEETING OF THE INTERNATIONAL PROGRAM ON RICE BIOTECHNOLOGY: 319; Phuket, Thailand 		319	1999		
30690	0	Rajguru,S.N., Burgos,N.R., Shivrain,V.K. and Stewart,J.M.	Mutations in the red rice ALS gene associated with resistance to imazethapyr	Weed Sci.	53(5)	567-577	2005	ALS	OsALS, AHAS
30691	17339651	Rzewuski,G., Cornell,K.A., Rooney,L., Burstenbinder,K., Wirtz,M., Hell,R. and Sauter,M.	OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.)	J. Exp. Bot.	58(6)	1505-1514	2007	_,_,SIP2	OsMTN, MTN,OsSAHH, SAHH,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1
30692	18583359	Sakane,I., Kamataki,C., Takizawa,Y., Nakashima,M., Toki,S., Ichikawa,H., Ikawa,S., Shibata,T. and Kurumizaka,H.	Filament formation and robust strand exchange activities of the rice DMC1A and DMC1B proteins	Nucleic Acids Res.	36(13)	4266-4276	2008	DMC1B,DMC1A	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
30693	0	Scheffler,B.E., Reddy,A., Hoffmann,I. and Wienand,U.	Chalcone synthase cDNA from Rice (Oryza sativa)	Plant Physiol.	109	722-722	1995	CHS	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26
30694	2791032	Shikanai,T., Yang,Z.Q. and Yamada,Y.	Nucleotide sequence and molecular characterization of plasmid-like DNAs from mitochondria of cytoplasmic male-sterile rice	Curr. Genet.	15(5)	349-354	1989		
30695	0	Shimazu,J., Matsukura,C., Senda,M., Ishikawa,R., Akada,S., Harada,T., Tabata,S. and Niizeki,M.	Characterization of a DMC1 homologue, RiLIM15, in meiotic panicles, mitotic cultured cells, and mature leaves of rice (Oryza sativa L.)	Theor. Appl. Genet.	102(8)	1159-1163	2001	LIM15	RiLIM15*, RiLIM15
30696	18604208	Shomura,A., Izawa,T., Ebana,K., Ebitani,T., Kanegae,H., Konishi,S. and Yano,M.	Deletion in a gene associated with grain size increased yields during rice domestication	Nat Genet	40(8)	1023-1028	2008	qSW5	GW5, OsGW5
30697	0	Sikka,V.K., Choi,S.-B., Kavakli,I.H., Gupta,S., Ito,H. and Okita,T.W.	Subcellular compartmentation and allosteric regulation of the rice endosperm ADP-glucose pyrophosphorylase	Plant Sci.	161(3)	461-468	2001	AGPS1	OsAGPS1, APS1, OsAPS1, AGPsma
30699	17520342	Song,D., Li,G., Song,F. and Zheng,Z.	Molecular characterization and expression analysis of OsBISERK1, a gene encoding a leucine-rich repeat receptor-like kinase, during disease resistance responses in rice	Mol. Biol. Rep.	35(2)	275-283	2008	_,TMS10,_,_	OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3
30700	17727616	Sugimoto,H., Kusumi,K., Noguchi,K., Yano,M., Yoshimura,A. and Iba,K.	The rice nuclear gene, VIRESCENT 2, is essential for chloroplast development and encodes a novel type of guanylate kinase targeted to plastids and mitochondria	Plant J.	52(3)	512-527	2007	V2,GK1	v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,cGK, OsGK1
30701	18666953	Sun,A.J., Xu,H.L., Gong,W.K., Zhai,H.L., Meng,K., Wang,Y.Q., Wei,X.L., Xiao,G.F. and Zhu,Z.	Cloning and Expression Analysis of Rice Sucrose Transporter Genes OsSUT2M and OsSUT5Z	J. Integr. Plant Biol.	50(1)	62-75	2008		
30703	0	Sun,T. and Yin,L.	Profiling of microarray data for iron deficiency in rice root	Bioinformatics	2(3)	1-5	2004		
30704	18676878	Suzaki,T., Yoshida,A. and Hirano,H.	Functional Diversification of CLAVATA3-Related CLE Proteins in Meristem Maintenance in Rice	Plant Cell	20	2049-58	2008	FON1,_,_,FON2	OsFON1, fon1, OsRLCK219, RLCK219,FCP2,FCP1, FCP1/Os CLE402, Os CLE402, OsCLE402,fon2, FON4, OsFON4, FON2/FON4, TG1
30705	16972867	Suzuki,M., Takahashi,M., Tsukamoto,T., Watanabe,S., Matsuhashi,S., Yazaki,J., Kishimoto,N., Kikuchi,S., Nakanishi,H., Mori,S. and Nishizawa,N.K.	Biosynthesis and secretion of mugineic acid family phytosiderophores in zinc-deficient barley	Plant J.	48(1)	85-97	2006	_,SIP2A,_,FDH,_,_,YSL15,NAAT1,_,NAS1,_	OsSAM2, OsSAMS2, OS-SAMS2,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1,OsIDI4, IDI4,OsFDH, FDH 1,OsDEP, DEP,OsAPT1, APRT, APT1,OsYSL15, OsYs7,OsNAAT1,OsMTK, OsMTK1, MTK, MTK1,OsNAS1,OsMTN, MTN
30706	17696613	Sweeney,M.T., Thomson,M.J., Cho,Y.G., Park,Y.J., Williamson,S.H., Bustamante,C.D. and McCouch,S.R.	Global dissemination of a single mutation conferring white pericarp in rice	PLoS Genet.	3 (8)	E133	2007	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
30707	17350935	Tabuchi,M., Abiko,T. and Yamaya,T.	Assimilation of ammonium ions and reutilization of nitrogen in rice (Oryza sativa L.)	J. Exp. Bot.	58(9)	2319-2327	2007	GLT2,_,GLN1;1,GLN1;2,GLT1	OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1
30708	0	Tada,Y.	PCR-amplified resistance gene analogs link to resistance loci in rice	Breeding Science	49(3)	267-273	1999	_,_,_,_,_,_,_,_,_,_	AT320-101,A320-111,T320-11,A320-4,A320-103,AT320-1,AT320-110,A320-114,A1.1-4,T580-9
30709	0	Takei,N., Nakazaki,T., Tsuchiya,T., Kowyama,Y. and Ikehashi,H.	Isolation of a pistil-specific chitinase gene in rice(Oryza sativa L.).(in Japanese)	Breeding Science	48	281	1998		
30710	0	Tang,S.J., Hou,Y.M. and Liu,L.S.	Studies on repeated DNA sequence of wide compatibility rice	(in) Yuan,L.P. (Ed.); CURRENT STATUS OF TWO LINE HYBRID RICE RESEARCH: 280-285; Agricultural Press, China 		280-285	1992		
30712	18664295	Tanthanuch,W., Chantarangsee,M., Maneesan,J. and Ketudat Cairns,J.R.	Genomic and expression analysis of glycosyl hydrolase family 35 genes from rice (Oryza sativa L.)	BMC Plant Biol	8(1)	84	2008	BGAL13,BGAL2,BGAL3,BGAL4,BGAL6,BGAL9,BGAL10,BGAL11,BGAL15,BGAL12,BGAL8,BGAL7,BGAL14,BGAL5,BGAL1	OsBgal13, OsBGal13,OsBgal2, OsBGal2,OsBgal3, OsBGal3,OsBgal4, OsBGal4,OsBgal6, OsBGal6,OsBgal9, OsBGal9,OsBgal10, OsBGal10,OsBgal11, OsBGal11,OsBgal15, OsBGal15,OsBgal12, OsBGal12,OsBgal8, OsBGal8,OsBgal7, OsBGal7, CARSR12,OsBgal14, OsBGal14, OsEnS-135,OsBgal5, OsBGal5, RMP1 ,OsBgal1, beta-gal, OsBGal1
30713	17449652	Terada,R., Johzuka-Hisatomi,Y., Saitoh,M., Asao,H. and Iida,S.	Gene targeting by homologous recombination as a biotechnological tool for rice functional genomics	Plant Physiol.	144(2)	846-856	2007	ADH2,ADH3	Adh2*, Adh2,Adh3, adh2(t)*
30714	16188032	Rice Chromosomes 11 and 12 Sequencing Consortia	The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications	BMC Biol.	3	20	2005		
30715	18193457	Thirumurugan,T., Ito,Y., Kubo,T., Serizawa,A. and Kurata,N.	Identification, characterization and interaction of HAP family genes in rice	Mol. Genet. Genomics	279(3)	279-289	2008	HAP3G,HAP2E,HAP5G,HAP5D,DRAP1,HAP2C,HAP2H,HAP2G,HAP2J,HAP2A,HAP3D,HAP2B,HAP3F,HAP2I,HAP2D,HAP3E,HAP3I,HAP3K,HAP3J,HAP5A,HAP5C,HAP5B,HAP5E,HAP5F,HAP2F,HAP3A,HAP3C,HAP3B,HD5,DRAP2	OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsDrAp1, DrAp1,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsDrAp2, DrAp2, OsHAPL1, HAPL1
30716	17938177	Tozawa,Y., Nozawa,A., Kanno,T., Narisawa,T., Masuda,S., Kasai,K. and Nanamiya,H.	Calcium-activated (p)ppGpp synthetase in chloroplasts of land plants	J. Biol. Chem.	282(49)	35536-45	2007	CRSH1,CRSH2,CRSH3	OsCRSH1,OsCRSH2,OsCRSH3
30717	18247046	Uchiyama,Y., Suzuki,Y. and Sakaguchi,K.	Characterization of plant XRCC1 and its interaction with proliferating cell nuclear antigen	Planta.	227(6)	1233-1241	2008	_,FEN1	OsXRCC1,OsFEN1, OsFEN-1a, FEN-1
30718	17644730	Ueguchi-Tanaka,M., Nakajima,M., Katoh,E., Ohmiya,H., Asano,K., Saji,S., Hongyu,X., Ashikari,M., Kitano,H., Yamaguchi,I. and Matsuoka,M.	Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin	Plant Cell	19(7)	2140-2155	2007	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
30719	18185911	Wang,R., Shen,W., Liu,L., Jiang,L., Liu,Y., Su,N. and Wan,J.	A novel lipoxygenase gene from developing rice seeds confers dual position specificity and responds to wounding and insect attack	Plant Mol. Biol.	66(4)	401-414	2008	LOX1	OsLOX1, OsLOX5
30720	0	Wang,S. and Xiao,X.	Isolation and linkage mapping of disease-resistance-like sequences from various rice cultivars, containing different recognition specificities	Plant Breeding	121	203-209	2002	_,_,_,_,_,_	Osh359-2,,YR2, YR6, YR9, YR10, YR21, YR23,YR48,YR1, YR7, YR11, YR20, YR22, YR24,
30721	18506478	Wang,Y., Xiao,Y., Zhang,Y., Chai,C., Wei,G., Wei,X., Xu,H., Wang,M., Ouwerkerk,P.B. and Zhu,Z.	Molecular cloning, functional characterization and expression analysis of a novel monosaccharide transporter gene OsMST6 from rice (Oryza sativa L.)	Planta.	228(4)	525-535	2008	MST1,MST3,MST4,MST6,MST8,MST5,MST2	OsMST1,OsMST3,OsMST4,OsMST6,OsMST8, OSMST8,OsMST5,OsMST2
30722	17874189	Wang,Y., Xu,H., Wei,X., Chai,C., Xiao,Y., Zhang,Y., Chen,B., Xiao,G., Ouwerkerk,P.B., Wang,M. and Zhu,Z.	Molecular cloning and expression analysis of a monosaccharide transporter gene OsMST4 from rice (Oryza sativa L.)	Plant Mol. Biol.	65(4)	439-451	2007	MST1,MST2,MST3,MST4,MST6,MST8,MST5	OsMST1,OsMST2,OsMST3,OsMST4,OsMST6,OsMST8, OSMST8,OsMST5
30723	0	Wu,J., Cramer,C.L. and Hatzios,K.K.	Nucleotide sequence of a cDNA encoding the second glutathione S-transferase from rice (Oryza sativa) (accession No. AJ002381)	Plant Physiol.	117	1126-1126	1998		
30724	2884170	Wu,N., Cote,J.C. and Wu,R.	Nucleotide sequence of the rice cytochrome f gene and the presence of sequence variation near this gene	Gene	50(1-3)	271-278	1986	PETA	petA, Cytf, cytF, Cyt f
30725	0	Wu,N.-H., Cote,J.-C. and Wu,R.	Structure of the chloroplast psbA gene encoding the Q-B protein from Oryza sativa L	Dev Genet.	8	339-350	1987	PSBA	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1
30726	17535821	Wu,Z., Zhang,X., He,B., Diao,L., Sheng,S., Wang,J., Guo,X., Su,N., Wang,L., Jiang,L., Wang,C., Zhai,H. and Wan,J.	A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis	Plant Physiol.	145(1)	29-40	2007	YGL1,CAB1R,CAB2R	OsYGL1, CHLG, Ygl1, CS, OsCHLG,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a 
30727	0	Xiang,T.	Cloning and characterization of a full-length cDNA encoding the RuBPCase small subunit(rbcS) in rice(Oryza sativa L.)	J. Zhejiang Univ. Sci.	32(3)	314-319	2005	_	RbcS3, OsRBCS3, OsRbcS3, rbcS 
30728	17426956	Xiao,B., Huang,Y., Tang,N. and Xiong,L.	Over-expression of a LEA gene in rice improves drought resistance under the field conditions	Theor. Appl. Genet.	115(1)	35-46	2007	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
30729	0	Xiao,C.	Sequencing of the cDNA encoding the 16 kDA proteolipid subunit of vacuolar H+-ATPase from rice and homology searching	Thesis  Biochemistry, Fudan University			1995		
30730	0	Xie,Y., Cai,Y., Peng,Z. and Wu,R.	Cloning and structure analysis of histone H3 gene and small subunit gene of 1,5-biphosphoric acid ribulose carboxylase rubisco of rice	Sci. China B	35(No.2)	148-160	1987	_	H3
30731	18325341	Xu,D.Q., Huang,J., Guo,S.Q., Yang,X., Bao,Y.M., Tang,H.J. and Zhang,H.S.	Overexpression of a TFIIIA-type zinc finger protein gene ZFP252 enhances drought and salt tolerance in rice (Oryza sativa L.)	FEBS Lett.	582	1037-1043	2008	ZFP252,LEA3-1,_,DREB1A,P5CS	RZF71,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsProT, ProT, OsProT2, ProT2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
30732	18454147	Xue,W., Xing,Y., Weng,X., Zhao,Y., Tang,W., Wang,L., Zhou,H., Yu,S., Xu,C., Li,X. and Zhang,Q.	Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice	Nat Genet	40(6)	761-767	2008	GHD7	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
30733	0	Xu,Z., Yamaguchi,I., Chen,J., Wan,J., Jiang,H. and Gao,X.	Cloning and Expression Analysis Of NADPH Oxidoreductase-Like Gene from Rice	Rice Science			2006		
30734	18487352	Yamada,T., Matsuda,F., Kasai,K., Fukuoka,S., Kitamura,K., Tozawa,Y., Miyagawa,H. and Wakasa,K.	Mutation of a rice gene encoding a phenylalanine biosynthetic enzyme results in accumulation of phenylalanine and tryptophan	Plant Cell	20(5)	1316-1329	2008	_	Mtr1, MTR1, PDT, ADT
30735	18515498	Yamaji,N., Mitatni,N. and Ma,J.F.	A transporter regulating silicon distribution in rice shoots	Plant Cell	20(5)	1381-1389	2008	LSI2,LSI1,LSI6	Lsi2, SIET1, OsLsi2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
30736	17895582	Yamamoto,A., Hirouchi,T., Mori,T., Teranishi,M., Hidema,J., Morioka,H., Kumagai,T. and Yamamoto,K.	Biochemical and biological properties of DNA photolyases derived from utraviolet-sensitive rice cultivars	Genes Genet. Syst.	82(4)	311-319	2007	_	qUVR-10, OsPHR, OsCPD, CPD
30737	17578919	Yang,G., Zhang,F., Hancock,C.N. and Wessler,S.R.	Transposition of the rice miniature inverted repeat transposable element mPing in Arabidopsis thaliana	Proc. Natl. Acad. Sci. U.S.A.	104(26)	10962-10967	2007	MPING,PONG,PING	mPing,Pong,Ping
30738	0	Yang,H.J.		Thesis  Department of Biological Sciences, University of Cambridge, Cambridge, United Kingdom			2001		
30739	17932646	Yang,S., Gu,T., Pan,C., Feng,Z., Ding,J., Hang,Y., Chen,J.Q. and Tian,D.	Genetic variation of NBS-LRR class resistance genes in rice lines	Theor. Appl. Genet.	116(2)	165-177	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PIB,_,_,_	,,,,,,,,,PIC22,,,,,,,,,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,,,
30740	17716996	Yara,A., Yaeno,T., Hasegawa,M., Seto,H., Montillet,J.L., Kusumi,K., Seo,S. and Iba,K.	Disease resistance against Magnaporthe grisea is enhanced in transgenic rice with suppression of omega-3 fatty acid desaturases	Plant Cell Physiol.	48(9)	1263-1274	2007	PR10A,PR1B,JAMYB,FAD8,MSRMK2,FAD7,FAD3	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsJAmyb, JAmyb, OsJAMyb ,OsFAD8, Osfad8,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsFAD7,OsFAD3
30741	17541629	Yuan,B., Shen,X., Li,X., Xu,C. and Wang,S.	Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens	Planta.	226(4)	953-960	2007	NH1,CHT1,MPK6,WRKY12,PR10A,PR5,PAL1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsMPK6, OsDR6, OsMPK4,OsWRKY12,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR5, Pir2, PR-5, PR5-1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1
30742	18258694	Yuan,J., Chen,D., Ren,Y., Zhang,X. and Zhao,J.	Characteristic and Expression Analysis of a Metallothionein Gene, OsMT2b, Down-Regulated by Cytokinin Suggests Functions in Root Development and Seed Embryo Germination of Rice	Plant Physiol.	146(4)	1637-1650	2008	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
30743	15685292	Yu,J., Wang,J., Lin,W., Li,S., Li,H., Zhou,J., Ni,P., Dong,W., Hu,S., Zeng,C., Zhang,J., Zhang,Y., Li,R., Xu,Z., Li,S., Li,X., Zheng,H., Cong,L., Lin,L., Yin,J., Geng,J., Li,G., Shi,J., Liu,J., Lv,H., Li,J., Wang,J., Deng,Y., Ran,L., Shi,X., Wang,X., Wu,Q., Li,C., Ren,X., Wang,J., Wang,X., Li,D., Liu,D., Zhang,X., Ji,Z., Zhao,W., Sun,Y., Zhang,Z., Bao,J., Han,Y., Dong,L., Ji,J., Chen,P., Wu,S., Liu,J., Xiao,Y., Bu,D., Tan,J., Yang,L., Ye,C., Zhang,J., Xu,J., Zhou,Y., Yu,Y., Zhang,B., Zhuang,S., Wei,H., Liu,B., Lei,M., Yu,H., Li,Y., Xu,H., Wei,S., He,X., Fang,L., Zhang,Z., Zhang,Y., Huang,X., Su,Z., Tong,W., Li,J., Tong,Z., Li,S., Ye,J., Wang,L., Fang,L., Lei,T., Chen,C., Chen,H., Xu,Z., Li,H., Huang,H., Zhang,F., Xu,H., Li,N., Zhao,C., Li,S., Dong,L., Huang,Y., Li,L., Xi,Y., Qi,Q., Li,W., Zhang,B., Hu,W., Zhang,Y., Tian,X., Jiao,Y., Liang,X., Jin,J., Gao,L., Zheng,W., Hao,B., Liu,S., Wang,W., Yuan,L., Cao,M., McDermott,J., Samudrala,R., Wang,J., Wong,G.K. and Yang,H.	The Genomes of Oryza sativa: A History of Duplications	PLos Biol.	3 (2)	E38	2005		
30744	12602862	Yu,R.M.K., Zhou,Y., Xu,Z.-F., Chye,M.L. and Kong,R.Y.C.	Two genes encoding protein phosphatase 2A catalytic subunits are differentially expressed in rice	Plant Mol. Biol.	51(3)	295-311	2003	PP2A-3,PP2A-1	OsPP2A-3, PP2A3, OsPP20,OsPP2A-1, PP2A1, OsPP88
30745	8790296	Zeltz,P., Kadowaki,K., Kubo,N., Maier,R.M., Hirai,A. and Kossel,H.	A promiscuous chloroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited	Plant Mol. Biol.	31(3)	647-656	1996	RPOB,RPOB	rpoB,rpoB, RpoB, Rpobeta
30746	0	Zhang,J.-S., Gu,J., Liu,F.-H. and Chen,S.-Y.	A gene encoding a truncated large subunit of Rubisco is transcribed and salt-inducible in rice	Theor. Appl. Genet.	91	361-366	1995	RBCL	rbcL, rbcA, OsrbcL
30747	17182895	Zhang,L.B. and Ge,S.	Multilocus analysis of nucleotide variation and speciation in Oryza officinalis and its close relatives	Mol. Biol. Evol.	24(3)	769-783	2007	ADH1,SSIIC,CPD1,CPS1,KS1,D1,GBSSII,_,WX1,LHS1	Adh1, Adh1/2, adh1/adh2, OsADH1,OsSSIIc, SSII-1, SSII1 ,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,GBSS2,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
30748	17534720	Zhang,S., Gu,Y.Q., Singh,J., Coleman-Derr,D., Brar,D.S., Jiang,N. and Lemaux,P.G.	New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification	Plant Mol. Biol.	64(5)	589-600	2007	DREB1B,ERF133,DREB1A	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
30749	0	Zhang,X.		Thesis  National Center for Gene Research			1999		
30751	18162595	Zhao,N., Ferrer,J.L., Ross,J., Guan,J., Yang,Y., Pichersky,E., Noel,J.P. and Chen,F.	Structural, Biochemical and Phylogenetic Analyses Suggest that Indole-3-acetic Acid Methyltransferase Is An Evolutionarily Ancient Member of the SABATH Family	Plant Physiol.	146(2)	455-467	2008	IAMT1	OsIAMT1, OsSABATH4
30752	17249423	Zhou,B., Dolan,M., Sakai,H. and Wang,G.L.	The genomic dynamics and evolutionary mechanism of the Pi2/9 locus in rice	Mol. Plant Microbe Interact.	20(1)	63-71	2007	_,_,_,_,_,_,_,_,_,_,_,_,_	NIP,Nbs5-Pi9, Nbs4-Pi2,Nbs2-Pi9, Pi9, Nbs2-Pi2, Nbs2-NPB,Nbs3-Pi9,Nbs6-Pi9,Nbs7-75, Nbs7-Pi2, Nbs5-NPB,Nbs9-75, Nbs9-Pi2, Nbs7-NPB,Nbs5-Pi2, Nbs3-NPB,Nbs6-Pi2, Nbs4-NPB,Nbs8-75, Nbs8-Pi2, Nbs6-NPB,PK,Nbs4-Pi9, Nbs3-Pi2,Nbs1-Pi9, Nbs1-Pi2, Nbs1-NPB
30753	0	Zhou,Z., Zhu,Z., Liu,C., Zhang,H., Xiao,G. and Li,X.	Construction of a rice immature seeds cDNA library and molecular cloning of the oryzacystatin cDNA	Sci. China, C, Life Sciences	39(3)	320-328	1996	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
30754	17218640	Zhu,Q., Zheng,X., Luo,J., Gaut,B.S. and Ge,S.	Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice	Mol. Biol. Evol.	24(3)	875-888	2007	SSIIC,CPD1,KS1,WX1,LHS1,_,ADH1,_,GBSSII,CATA	OsSSIIc, SSII-1, SSII1 ,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,Adh1, Adh1/2, adh1/adh2, OsADH1,Os0053, OsGL1-6,GBSS2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
30755	0	Zhu,T., Song,F. and Zheng,Z.	Molecular Characterization of the Rice Pathogenesis-related Protein, OsPR-4b, and Its Antifungal Activity Against Rhizoctonia solani	J. Phytopathology	154(6)	378-384	2006	PR4B	OsPR4b, OsPR-4b
30756	0	Zhu,Y.	A new Myc-protein	Thesis  Department of Genetics, Shanghai Institute of Plant Physiology, Shanghai, China			2002		
30757	0	Zong,H., Jiang,Y. and Cao,K.	Isolation and Characterization of a rice QM gene, tumor suppressor or development regulator	Thesis  Biochemistry, Fudan University			1996		
30758	17604002	Zou,M., Guan,Y., Ren,H., Zhang,F. and Chen,F.	Characterization of alternative splicing products of bZIP transcription factors OsABI5	Biochem. Biophys. Res. Commun.	360(2)	307-313	2007	VP1,ABI5	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
30759	18315873	Zou,X.H., Zhang,F.M., Zhang,J.G., Zang,L.L., Tang,L., Wang,J., Sang,T. and Ge,S.	Analysis of 142 genes resolves the rapid diversification of the rice genus	Genome Biol.	9 (3)	R49	2008		
30760	17022630	Jung YH, Rakwal R, Agrawal GK, Shibato J, Kim JA, Lee MO, Choi PK, Jung SH, Kim SH, Koh HJ, Yonekura M, Iwahashi H, Jwa NS.	Differential expression of defense/stress-related marker proteins in leaves of a unique rice blast lesion mimic mutant (blm).	J Proteome Res.	5(10)	2586-98	2006		
30761	15659436	Ishikawa S, Maekawa M, Arite T, Onishi K, Takamure I, Kyozuka J.	Suppression of Tiller Bud Activity in Tillering Dwarf Mutants of Rice	Plant Cell Physiol.	46(1)	79-86	2005	D17,D10,D27,D3,D14	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d27(d t), dt, dwf23, d27, OsD27,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4
30762		Khun LH, Sato S	Identification of few lateness genes in rice.	Breeding Research	4(Suppl. 2)	368	2002		
30764	16010732	Zhuang X, Xu Y, Chong K, Lan L, Xue Y, Xu Z.	OsAGAP, an ARF-GAP from rice, regulates root development mediated by auxin in Arabidopsis.	Plant Cell Environ.	28(2)	147-56	2005	AGAP	OsAGAP
30765		L.L. LIU, L. ZHAO, Q. LI, L. JIANG, C.M. WANG, W.W. ZHANG, S.J. LIU, L.M. CHEN, H.Q. ZHAI and J.M. WAN	Molecular cloning and expression of a novel glutamate decarboxylase gene in rice 	RGN	21	39-41	2004		
30767	17369428	Dai M, Zhao Y, Ma Q, Hu Y, Hedden P, Zhang Q, Zhou DX.	The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism.	Plant Physiol.	144(1)	121-33	2007	SD1,D18,YAB1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsYAB1, FIL1, osFIL1
30768	15759867	Zhao XQ, Liang GH, Zhou JS, Yan CJ, Cao XY, Gu MH.	Molecular mapping of two semidwarf genes in an indica rice variety Aitaiyin3 (Oryza sativa L.)]	Yi Chuan Xue Bao	32(2)	189-96	2005		
30769	11209709	Li X, Gu MH, Liang GH, Xu JF, Chen ZX, Yang HS.	[Chromosome location of a semidwarf gene sd-t in indica rice (O. sativa L.)]	Yi Chuan Xue Bao	28(1)	33-40	2001		
30770	17579813	Zeng D, Yan M, Wang Y, Liu X, Qian Q, Li J.	Du1, encoding a novel Prp1 protein, regulates starch biosynthesis through affecting the splicing of Wxb pre-mRNAs in rice (Oryza sativa L.).	Plant Mol. Biol.	65(4)	501-9	2007	DU1,_,WX1	du1,Du1L,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30800	16289628	Ciaffi M, Paolacci AR, D'Aloisio E, Tanzarella OA, Porceddu E.	Cloning and characterization of wheat PDI (protein disulfide isomerase) homoeologous genes and promoter sequences.	Gene	366(2)	209-18	2006		
30801	16364243	Long L, Lin X, Zhai J, Kou H, Yang W, Liu B.	Heritable alteration in DNA methylation pattern occurred specifically at mobile elements in rice plants following hydrostatic pressurization.	Biochem. Biophys. Res. Commun.	340(2)	369-76	2006		
30802	16369532	Li L, Wang X, Stolc V, Li X, Zhang D, Su N, Tongprasit W, Li S, Cheng Z, Wang J, Deng XW.	Genome-wide transcription analyses in rice using tiling microarrays.	Nat Genet	38(1)	124-9	2006		
30803	16380417	Kawasaki T, Koita H, Nakatsubo T, Hasegawa K, Wakabayashi K, Takahashi H, Umemura K, Umezawa T, Shimamoto K.	Cinnamoyl-CoA reductase, a key enzyme in lignin biosynthesis, is an effector of small GTPase Rac in defense signaling in rice.	Proc. Natl. Acad. Sci. U.S.A.	103(1)	230-5	2006	CCR1,RAC1	OsCCR1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
30804	16381819	Ma J, Bennetzen JL.	Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice.	Proc. Natl. Acad. Sci. U.S.A.	103(2)	383-8	2006		
30805	16407940	Lowe DC.	Global change: a green source of surprise.	Nature	439(7073)	148-9	2006		
30806	16467140	Chapman BA, Bowers JE, Feltus FA, Paterson AH.	Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication.	Proc. Natl. Acad. Sci. U.S.A.	103(8)	2730-5	2006		
30807	16473138	Zhang L, Tamura K, Shin-ya K, Takahashi H.	The telomerase inhibitor telomestatin induces telomere shortening and cell death in Arabidopsis.	Biochim. Biophys. Acta	1763(1)	39-44	2006	TERT	OsTERT
30808	16483690	Morokuma, M.	Ethanolic fermentation and anoxia tolerance in four rice cultivars.	J. Plant Physiol.	164, no. 2	168	2007		
30809	16488558	Terol J, Domingo C, Talon M.	The GH3 family in plants: genome wide analysis in rice and evolutionary history based on EST analysis.	Gene	371(2)	279-90	2006		
30810	16500726	Stewart, J.M.	Alteration of oxidative and carbohydrate metabolism under abiotic stress in two rice (Oryza sativa L.) genotypes contrasting in chilling tolerance.	J. Plant Physiol.	164, no. 2	157	2007		
30811	16537502	Gill, B.S.	Gene evolution at the ends of wheat chromosomes.	Proc. Natl. Acad. Sci. U.S.A.	103, no. 11	4162	2006		
30812	16554820	Gilbert MJ, Thornton CR, Wakley GE, Talbot NJ.	A P-type ATPase required for rice blast disease and induction of host resistance.	Nature	440(7083)	535-9	2006		
30813	16632598	Wang BB, Brendel V.	Genomewide comparative analysis of alternative splicing in plants.	Proc. Natl. Acad. Sci. U.S.A.	103(18)	7175-80	2006		
30814	16644142	Shi X, Wang X, Li Z, Zhu Q, Tang W, Ge S, Luo J.	Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias.	Gene	376(2)	199-206	2006		
30815	16645096	Veneault-Fourrey C, Barooah M, Egan M, Wakley G, Talbot NJ.	Autophagic fungal cell death is necessary for infection by the rice blast fungus.	Science	312(5773)	580-3	2006		
30816	16690022	Jain M, Nijhawan A, Tyagi AK, Khurana JP.	Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR.	Biochem. Biophys. Res. Commun.	345(2)	646-51	2006	18S  rRNA,RUBQ2,RFA4,UBQ5,TUB4,_,EEF1A,25S rRNA,ACT1,UBC,EIF4A2	,rubq2, rub1, Ubq1, Rubq1, UBQ10 ,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,RPS27a, OsUBQ5, OsRPS27a,OsTUB4, TUBB4, OSTB-16, R1623, RTUB-1, Ostub16,GAPDH, OsGAPDH, OsGapC2,eEF-1alpha,25S rRNA,act1, AC1, RAC1, RAc1, ACT11, OsACT1,UBC, OsUBC32, UBC32,eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23
30817	16702555	Li ZK, Arif M, Zhong DB, Fu BY, Xu JL, Domingo-Rey J, Ali J, Vijayakumar CH, Yu SB, Khush GS.	Complex genetic networks underlying the defensive system of rice (Oryza sativa L.) to Xanthomonas oryzae pv. oryzae.	Proc. Natl. Acad. Sci. U.S.A.	103(21)	7994-9	2006		
30818	16753273	Iwamoto M, Higo K.	Accumulation of sense-antisense transcripts of the rice catalase gene CatB under dark conditions requires signals from shoots.	Gene	377()	186-94	2006	CATB	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
30819	16763049	Yadav, N.S.	Identification of bifunctional delta12/omega3 fatty acid desaturases for improving the ratio of omega3 to omega6 fatty acids in microbes and plants.	Proc. Natl. Acad. Sci. U.S.A.	103, no. 25	9446	2006		
30820	16769152	Jin, S.	Molecular cloning and characterization of an arginine decarboxylase gene up-regulated by chilling stress in rice seedlings.	J. Plant Physiol.	164, no. 5	645	2007	ADC1	OsADC1, ARGDC, ADC, OsAdc1
30821	16809532	Ort, Donald R.	Food for thought: lower-than-expected crop yield stimulation with rising CO2 concentrations.	Science	312, no. 5782	1918	2006		
30822	16822623	Frankel N, Carrari F, Hasson E, Iusem ND.	Evolutionary history of the Asr gene family.	Gene	378	74-83	2006	ASR5,ASR6,ASR2,ASR3,ASR4,ASR1	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,Asr6,OsAsr2, OsASR4, OsASR6,Asr3, OsASR5, OsASR1, Asr1,Asr4, OsASR6, OsASR2, Asr2,OsAsr1, OsASR3, ASR3, Asr3
30823	16831523	Leseberg CH, Li A, Kang H, Duvall M, Mao L.	Genome-wide analysis of the MADS-box gene family in Populus trichocarpa.	Gene	378	84-94	2006		
30824	16843620	Krupa A, Anamika , Srinivasan N.	Genome-wide comparative analyses of domain organisation of repertoires of protein kinases of Arabidopsis thaliana and Oryza sativa.	Gene	380(1)	1-13	2006		
30825	16857943	Erkel C, Kube M, Reinhardt R, Liesack W.	Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere.	Science	313(5785)	370-2	2006		
30826	16873616	Normile D.	Agricultural research. Consortium aims to supercharge rice photosynthesis.	Science	313(5786)	423	2006		
30827	16876912	Duff, S.M.G	Phylogenetic and expression analysis of sucrose phosphate synthase isozymes in plants.	J. Plant Physiol.	164	923	2007		
30828	16893175	Smagghe BJ, Kundu S, Hoy JA, Halder P, Weiland TR, Savage A, Venugopal A, Goodman M, Premer S, Hargrove MS.	Role of phenylalanine B10 in plant nonsymbiotic hemoglobins.	Biochemistry	45(32)	9735-45	2006		
30829	16900186	Sasaki T.	Plant breeding: rice in deep water.	Nature	442(7103)	635-6	2006		
30830	16901582	Yasuda, Y.	Effect of low temperature on ethanolic fermentation in rice seedlings.	J. Plant Physiol.	164	1013	2007		
30832	16990520	Vogel G.	Genetically modified crops. Tracing the transatlantic spread of GM rice.	Science	313(5794)	1714	2006		
30833	16996700	Lin J, Chen ZZ, Tian B, Hua YJ.	Evolutionary pathways of an ancient gene recX.	Gene	387(1-2)	15-20	2007		
30834	17000027	Cho, S.H.	Expression of rice acyl-CoA oxidase isoenzymes in response to wounding.	J. Plant Physiol.	164, no. 5	665	2007	ACX2,ACX1,ACX3	OsACX2,OsACX1 ,OsACX3
30835	17027118	Chong, K.	Transgenic rice plants ectopically expressing AtBAK1 are semi-dwarfed and hypersensitive to 24-epibrassinolide.	J. Plant Physiol.	164, no. 5	655	2007		
30836	17052766	Washio K, Morikawa M.	Common mechanisms regulating expression of rice aleurone genes that contribute to the primary response for gibberellin.	Biochim. Biophys. Acta	1759(10)	478-90	2006	GAMYB,RPBF	OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF
30837	17077941	Chen, L.	Photosynthetic and biochemical activities in flag leaves of a newly developed superhigh-yield hybrid rice (Oryza sativa) and its parents during the reproductive stage.	Journal of plant research.	120	209	2007		
30838	17139419	Narangajavana, Jarunya 	Development of genotype-independent regeneration system for transformation of rice (Oryza sativa ssp. indica).	Journal of plant research.	120	237	2007		
30839	17182003	Akutsu N, Iijima K, Hinata T, Tauchi H.	Characterization of the plant homolog of Nijmegen breakage syndrome 1: Involvement in DNA repair and recombination.	Biochem. Biophys. Res. Commun.	353(2)	394-8	2007	NBS1	OsNbs1
30840	17187943	Dong H, Deng Y, Chen J, Wang S, Peng S, Dai C, Fang Y, Shao J, Lou Y, Li D.	An exploration of 3'-end processing signals and their tissue distribution in Oryza sativa.	Gene	389	107-13	2006		
30841	17210233	Sakai H, Tanaka T, Itoh T.	Birth and death of genes promoted by transposable elements in Oryza sativa.	Gene	392	59-63	2006		
30842	17213316	Chen, Xingcan	Plants and people from the Early Neolithic to Shang periods in North China.	Proc. Natl. Acad. Sci. U.S.A.	104	1087	2007		
30843	17215059	Kao, C.H.	The participation of hydrogen peroxide in methyl jasmonate-induced NH(4)(+) accumulation in rice leaves.	J. Plant Physiol.	9	1469	2007		
30844	17250976	Numata K, Okada Y, Saito R, Kiyosawa H, Kanai A, Tomita M.	Comparative analysis of cis-encoded antisense RNAs in eukaryotes.	Gene	392	134-41	2006		
30845	17254555	Zhao B, Liang R, Ge L, Li W, Lin H, Ruan K, Jin Y, Xiao H.	Identification of drought-induced microRNAs in rice.	Biochem. Biophys. Res. Commun.	354	585-90	2007	MIR169g	MIR-169g, osa-MIR169g
30846	17306416	Zheng, J.	Heredity, physiology and mapping of a chlorophyll content gene of rice (Oryza sativa L.).	J. Plant Physiol.	165	324	2008	GC	Gc
30847	17350139	Dubery, I.A.	Expression of mitochondrial tatC in Nicotiana tabacum is responsive to benzothiadiazole and salicylic acid.	J. Plant Physiol.	164	1231	2007	TATC	OsTATC, OsTatC, TatC
30848	17404686	Peng, Youliang 	Induced expression of oryzain alpha gene encoding a cysteine proteinase under stress conditions.	Journal of plant research.	120	465	2007	OCP	ocp*, ocp
30849	17446357	Pennisi E	Plant science. Long-sought plant flowering signal unmasked, again.	Science	316	350-1	2007		
30850	17446396	Cui H,Levesque MP,Vernoux T,Jung JW,Paquette AJ,Gallagher KL,Wang JY,Blilou I,Scheres B,Benfey PN	An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.	Science	316	421-5	2007	SCR,SCR1,SHR2,SHR1	OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38
30851	17449639	Ishimaru Y,Kim S,Tsukamoto T,Oki H,Kobayashi T,Watanabe S,Matsuhashi S,Takahashi M,Nakanishi H,Mori S,Nishizawa NK	Mutational reconstructed ferric chelate reductase confers enhanced tolerance in rice to iron deficiency in calcareous soil.	Proc. Natl. Acad. Sci. U.S.A.	104	7373-8.	2007		
30852	17456599	Xu M,Wilderman PR,Peters RJ	Following evolution's lead to a single residue switch for diterpene synthase product outcome.	Proc. Natl. Acad. Sci. U.S.A.	104	7397-401	2007		
30853	17459330	Zulfugarov IS,Ham OK,Mishra SR,Kim JY,Nath K,Koo HY,Kim HS,Moon YH,An G,Lee CH	Dependence of reaction center-type energy-dependent quenching on photosystem II antenna size.	Biochim. Biophys. Acta	1767	773-80	2007		
30854	17460040	Guerinot ML	It's elementary: enhancing Fe3+ reduction improves rice yields.	Proc. Natl. Acad. Sci. U.S.A.	104	7311	2007		
30855	17460628	Ledford H	Elusive flowering signal pruned of mystery at last.	Nature	446	956-7	2007		
30856	17460688	Matsuoka M,Ashikari M	A quantitative trait locus regulating rice grain width.	Nat Genet	39	583-4	2007		
30857	17483453	Naylor RL,Battisti DS,Vimont DJ,Falcon WP,Burke MB	Assessing risks of climate variability and climate change for Indonesian rice agriculture.	Proc. Natl. Acad. Sci. U.S.A.	104	7752-7	2007		
30858	17498837	Ino, T.	UV-induced momilactone B accumulation in rice rhizosphere.	J. Plant Physiol.	9	1548	2007		
30859	17499610	Nagasaka R,Chotimarkorn C,Shafiqul IM,Hori M,Ozaki H,Ushio H	Anti-inflammatory effects of hydroxycinnamic acid derivatives.	Biochem. Biophys. Res. Commun.	358	615-9	2007		
30860	17512990	Ng DW,Wang T,Chandrasekharan MB,Aramayo R,Kertbundit S,Hall TC	Plant SET domain-containing proteins: structure, function and regulation.	Biochim. Biophys. Acta	1769	316-29	2007		
30861	17521606	Liu T,Gu JY,Xu CJ,Gao Y,An CC	Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants.	Biochem. Biophys. Res. Commun.	358	983-9	2007	SLRL2,SLRL1,SLR1	OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
30862	17540516	Garrocho-Villegas V,Gopalasubramaniam SK,Arredondo-Peter R	Plant hemoglobins: what we know six decades after their discovery.	Gene	398	78-85	2007	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
30863	17558543	Okamoto, Takashi 	Identification of the major protein components of rice egg cells.	Journal of plant research.	120	575	2007		
30864	17563377	Sugio A,Yang B,Zhu T,White FF	Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice.	Proc. Natl. Acad. Sci. U.S.A.	104	10720-5	2007	XA5,TFX1,_,XA13	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,OsbZIP73, bZIP73, OsTFX1,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
30865	17566602	Chong, K.	Over-expression of OsUGE-1 altered raffinose level and tolerance to abiotic stress but not morphology in Arabidopsis.	J. Plant Physiol.	164	1384	2007	UGE1	OsUGE-1
30866	17568562	Lee JR,Park SC,Kim MH,Jung JH,Shin MR,Lee DH,Cheon MG,Park Y,Hahm KS,Lee SY	Antifungal activity of rice Pex5p, a receptor for peroxisomal matrix proteins.	Biochem. Biophys. Res. Commun.	359	941-6	2007	PEX5	OsPEX5, OsPex5pL, OsPex5pS, OsPex5L, OsPex5S, OsPex5p
30867	17573530	Nochi T,Takagi H,Yuki Y,Yang L,Masumura T,Mejima M,Nakanishi U,Matsumura A,Uozumi A,Hiroi T,Morita S,Tanaka K,Takaiwa F,Kiyono H	Rice-based mucosal vaccine as a global strategy for cold-chain- and needle-free vaccination.	Proc. Natl. Acad. Sci. U.S.A.	104	10986-91	2007	GLUB1	GluB1, GluB1-A, GluB-1, OsGluB1
30868	17586462	Koo SC,Yoon HW,Kim CY,Moon BC,Cheong YH,Han HJ,Lee SM,Kang KY,Kim MC,Lee SY,Chung WS,Cho MJ	Alternative splicing of the OsBWMK1 gene generates three transcript variants showing differential subcellular localizations.	Biochem. Biophys. Res. Commun.	360	188-93	2007	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S
30869	17592727	Peng LT,Shi ZY,Li L,Shen GZ,Zhang JL	Ectopic expression of OsLFL1 in rice represses Ehd1 by binding on its promoter.	Biochem. Biophys. Res. Commun.	360	251-6	2007	LFL2,LFL1,EF1	OsLFL2,OsLFL1, OsSTA29, STA29,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
30870	17595297	Salvi S,Sponza G,Morgante M,Tomes D,Niu X,Fengler KA,Meeley R,Ananiev EV,Svitashev S,Bruggemann E,Li B,Hainey CF,Radovic S,Zaina G,Rafalski JA,Tingey SV,Miao GH,Phillips RL,Tuberosa R	Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.	Proc. Natl. Acad. Sci. U.S.A.	104	11376-81	2007		
30871	17599908	Peres A,Churchman ML,Hariharan S,Himanen K,Verkest A,Vandepoele K,Magyar Z,Hatzfeld Y,Van Der Schueren E,Beemster GT,Frankard V,Larkin JC,Inze D,De Veylder L	Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses.	J. Biol. Chem.	282	25588-96	2007	EL2,CDKA1;1,CYCD5;3	Orysa; EL2,CDKA1;1,CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3
30872	17600089	Egan MJ,Wang ZY,Jones MA,Smirnoff N,Talbot NJ	Generation of reactive oxygen species by fungal NADPH oxidases is required for rice blast disease.	Proc. Natl. Acad. Sci. U.S.A.	104	11772-7	2007		
30873	17615239	Liu R,Vitte C,Ma J,Mahama AA,Dhliwayo T,Lee M,Bennetzen JL	A GeneTrek analysis of the maize genome.	Proc. Natl. Acad. Sci. U.S.A.	104	11844-9	2007		
30874	17616579	Rice, Charles M.	Cellular cofactors affecting hepatitis C virus infection and replication.	Proc. Natl. Acad. Sci. U.S.A.	104	12884	2007		
30875	17629420	Mukhopadhyay P,Basak S,Ghosh TC	Nature of selective constraints on synonymous codon usage of rice differs in GC-poor and GC-rich genes.	Gene	400	71-81	2007		
30876	17629421	Yang Z,Wang X,Gu S,Hu Z,Xu H,Xu C	Comparative study of SBP-box gene family in Arabidopsis and rice.	Gene	407	1-11	2008		
30877	17631271	Takahashi-Ando N,Inaba M,Ohsato S,Igawa T,Usami R,Kimura M	Identification of multiple highly similar XIP-type xylanase inhibitor genes in hexaploid wheat.	Biochem. Biophys. Res. Commun.	360	880-4	2007		
30878	17681400	Panda, S.K.	Chromium-mediated oxidative stress and ultrastructural changes in root cells of developing rice seedlings.	J. Plant Physiol.	9	1419	2007		
30879	17686457	Scortecci KC,Lima AF,Carvalho FM,Silva UB,Agnez-Lima LF,Batistuzzo de Medeiros SR	A characterization of a MutM/Fpg ortholog in sugarcane--A monocot plant.	Biochem. Biophys. Res. Commun.	361	1054-60	2007	MUTM2,MUTM1	MutM2, Fpg,MutM1, Fpg
30880	17689888	Riese M,Hohmann S,Saedler H,Munster T,Huijser P	Comparative analysis of the SBP-box gene families in P. patens and seed plants.	Gene	401	28-37	2007		
30881	17698298	Han Y,Sun FJ,Rosales-Mendoza S,Korban SS	Three orthologs in rice, Arabidopsis, and Populus encoding starch branching enzymes (SBEs) are different from other SBE gene families in plants.	Gene	401	123-30	2007		
30882	17699623	Bai MY,Zhang LY,Gampala SS,Zhu SW,Song WY,Chong K,Wang ZY	Functions of OsBZR1 and 14-3-3 proteins in brassinosteroid signaling in rice.	Proc. Natl. Acad. Sci. U.S.A.	104	13839-44	2007	BZR4,BZR1,BZR3,BZR2,GF14C	OsBZR4,OsBZR1, Os BZR1,OsBZR3,OsBZR2,GF14c, OsGF14c, 14-3-3c
30883	17721507	Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruy?re C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, P? ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Qu?tier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.	The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.	Nature	449	463-7	2007		
30884	17728010	Itoh, K.	Suppression and promotion of growth by ethylene in rice seedlings depends on ambient humidity.	J. Plant Physiol.	164	1683	2007		
30885	17826739	Seong ES,Guo J,Kim YH,Cho JH,Lim CK,Hyun Hur J,Wang MH	Regulations of marker genes involved in biotic and abiotic stress by overexpression of the AtNDPK2 gene in rice.	Biochem. Biophys. Res. Commun.	363	126-32	2007	NH1,SODCC2,APX2,SODCC1,PR4,APX1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsPR4, OsPR4a, PR4a, OsPR-4,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
30886	17872948	Shimura K,Okada A,Okada K,Jikumaru Y,Ko KW,Toyomasu T,Sassa T,Hasegawa M,Kodama O,Shibuya N,Koga J,Nojiri H,Yamane H	Identification of a biosynthetic gene cluster in rice for momilactones.	J. Biol. Chem.	282	34013-8	2007	CYP99A2,CYP99A3,MAS	CYP99A2,,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 
30887	17881564	Karaba A,Dixit S,Greco R,Aharoni A,Trijatmiko KR,Marsch-Martinez N,Krishnan A,Nataraja KN,Udayakumar M,Pereira A	Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene.	Proc. Natl. Acad. Sci. U.S.A.	104	15270-5	2007		
30888	17897620	Ochiai N,Tokai T,Nishiuchi T,Takahashi-Ando N,Fujimura M,Kimura M	Involvement of the osmosensor histidine kinase and osmotic stress-activated protein kinases in the regulation of secondary metabolism in Fusarium graminearum.	Biochem. Biophys. Res. Commun.	363	639-44	2007		
30889	17898767	Zong Y,Chen Z,Innes JB,Chen C,Wang Z,Wang H	Fire and flood management of coastal swamp enabled first rice paddy cultivation in east China.	Nature	449	459-62	2007		
30890	17904519	Ichida H,Maeda K,Ichise H,Matsuyama T,Abe T,Yoneyama K,Koba T	In silico restriction landmark genome scanning analysis of Xanthomonas oryzae pathovar oryzae MAFF 311018.	Biochem. Biophys. Res. Commun.	363	852-6	2007		
30891	17922660	Yao Y,Du Y,Jiang L,Liu JY	Interaction between ACC synthase 1 and 14-3-3 proteins in rice: a new insight.	Biochemistry (Mosc)	72	1003-7	2007		
30892	17923480	Garvey GS,McCormick SP,Rayment I	Structural and functional characterization of the TRI101 trichothecene 3-O-acetyltransferase from Fusarium sporotrichioides and Fusarium graminearum: kinetic insights to combating Fusarium head blight.	J. Biol. Chem.	283	1660-9	2008		
30893	17923667	Zhang Q	Strategies for developing Green Super Rice.	Proc. Natl. Acad. Sci. U.S.A.	104	16402-9	2007		
30894	17932040	Katsuyama Y,Matsuzawa M,Funa N,Horinouchi S	In vitro synthesis of curcuminoids by type III polyketide synthase from Oryza sativa.	J. Biol. Chem.	282	37702-9	2007		
30895	17950698	Hernandez Torres J,Maldonado MA,Chomilier J	Tandem duplications of a degenerated GTP-binding domain at the origin of GTPase receptors Toc159 and thylakoidal SRP.	Biochem. Biophys. Res. Commun.	364	325-31	2007		
30896	17961759	Nemoto T,Okada A,Okada K,Shibuya N,Toyomasu T,Nojiri H,Yamane H	Promoter analysis of the rice stemar-13-ene synthase gene OsDTC2, which is involved in the biosynthesis of the phytoalexin oryzalexin S.	Biochim. Biophys. Acta	1769	678-83	2007	KS8	OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32
30897	17961936	Suzuki M,Tanaka K,Kuwano M,Yoshida KT	Expression pattern of inositol phosphate-related enzymes in rice (Oryza sativa L.): implications for the phytic acid biosynthetic pathway.	Gene	405	55-64	2007	_,_,INO2,_,ITPK1,DSM3,ITPK5,ITPK4,_,INO1,ITPK3,ITPK6	OsIMP-2, IMP-2,OsIMP-1, IMP-1, OsIMP, IMP,OsINO2, RINO2, OsINO1-2,OsIPK1, IPK1,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1,OsITPK5, OsITP5/6K-5, OsITL3,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsIPK2, IPK2, IP6K,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsITPK6, OsITP5/6K-6, ITP5/6K-6
30898	17988639	Yang L,Kajiura H,Suzuki K,Hirose S,Fujiyama K,Takaiwa F	Generation of a transgenic rice seed-based edible vaccine against house dust mite allergy.	Biochem. Biophys. Res. Commun.	365	334-9	2008	GLUB1	GluB1, GluB1-A, GluB-1, OsGluB1
30899	18024592	Nelson EJ,Chowdhury A,Harris JB,Begum YA,Chowdhury F,Khan AI,Larocque RC,Bishop AL,Ryan ET,Camilli A,Qadri F,Calderwood SB	Complexity of rice-water stool from patients with Vibrio cholerae plays a role in the transmission of infectious diarrhea.	Proc. Natl. Acad. Sci. U.S.A.	104	19091-6	2007		
30900	18025467	Kobayashi T,Ogo Y,Itai RN,Nakanishi H,Takahashi M,Mori S,Nishizawa NK	The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.	Proc. Natl. Acad. Sci. U.S.A.	104	19150-5	2007	IDEF1,_,NAS2,IRT1	OsLFL2, LFL2, OsIDEF1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS2,OsIRT1
30901	18042708	Zhou F,Pu Y,Wei T,Liu H,Deng W,Wei C,Ding B,Omura T,Li Y	The P2 capsid protein of the nonenveloped rice dwarf phytoreovirus induces membrane fusion in insect host cells.	Proc. Natl. Acad. Sci. U.S.A.	104	19547-52	2007		
30902	18042724	Miya A,Albert P,Shinya T,Desaki Y,Ichimura K,Shirasu K,Narusaka Y,Kawakami N,Kaku H,Shibuya N	CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis.	Proc. Natl. Acad. Sci. U.S.A.	104	19613-8	2007	CEBiP	CEBIP, Os-LYP1, LYP1, OsCEBiP
30903	18079367	Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL.	The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.	Science	319	64-9	2008		
30904	18154307	Sawano M,Yamamoto H,Ogasahara K,Kidokoro S,Katoh S,Ohnuma T,Katoh E,Yokoyama S,Yutani K	Thermodynamic basis for the stabilities of three CutA1s from Pyrococcus horikoshii,Thermus thermophilus, and Oryza sativa, with unusually high denaturation temperatures.	Biochemistry	47	721-30	2008	CUTA1	OsCutA1
30905	18155857	Liu Q,Zhu H	Molecular evolution of the MLO gene family in Oryza sativa and their functional divergence.	Gene	409	1-10	2008	MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_	OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3,OsMLO4, OsMLO1, MLO1,OsMLO4, MLO4,OsMLO7, MLO7,OsMLO5, MLO5,OsMLO9, MLO9,OsMLO10, MLO10,OsMLO12, MLO12,OsMLO8, MLO8,OsMLO11, MLO11,OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6,OsMLO5, OsMLO2
30906	18287029	Tsai J,Lee JT,Wang W,Zhang J,Cho H,Mamo S,Bremer R,Gillette S,Kong J,Haass NK,Sproesser K,Li L,Smalley KS,Fong D,Zhu YL,Marimuthu A,Nguyen H,Lam B,Liu J,Cheung I,Rice J,Suzuki Y,Luu C,Settachatgul C,Shellooe R,Cantwell J,Kim SH,Schlessinger J,Zhang KY,West BL,Powell B,Habets G,Zhang C,Ibrahim PN,Hirth P,Artis DR,Herlyn M,Bollag G	Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity.	Proc. Natl. Acad. Sci. U.S.A.	105	3041	2008		
30907	18291601	Xu Z,Ramakrishna W	Retrotransposon insertion polymorphisms in six rice genes and their evolutionary history.	Gene	412	50-8	2008		
30908	18291602	Nayidu NK,Wang L,Xie W,Zhang C,Fan C,Lian X,Zhang Q,Xiong L	Comprehensive sequence and expression profile analysis of PEX11 gene family in rice.	Gene	412	59-70	2008	PEX11-2,PEX11-4,PEX11-5,PEX11-3,PEX11-1	OsPEX11-2, OsPEX11-5,OsPEX11-4,OsPEX11-5,OsPEX11-3, OsPEX11 ,OsPEX11-1, OsPEX11
30909	18303117	Batista R,Saibo N,Lourenco T,Oliveira MM	Microarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion.	Proc. Natl. Acad. Sci. U.S.A.	105	3640-5	2008		
30910	18305171	Rao NN,Prasad K,Kumar PR,Vijayraghavan U	Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture.	Proc. Natl. Acad. Sci. U.S.A.	105	3646-51	2008	RFL,MADS50	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208
30911	18353984	Lu C,Jeong DH,Kulkarni K,Pillay M,Nobuta K,German R,Thatcher SR,Maher C,Zhang L,Ware D,Liu B,Cao X,Meyers BC,Green PJ	Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs).	Proc. Natl. Acad. Sci. U.S.A.	105	4951-6	2008	DCL1,MIR1427,MIR810B,MIR1432	Dcl1, OsDCL1, osDCL1, Os-DCL1,miR1427, osa-miR1427, osa-MIR1427,miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432
30912	18362346	Gilbert M,Xiao X,Pfeiffer DU,Epprecht M,Boles S,Czarnecki C,Chaitaweesub P,Kalpravidh W,Minh PQ,Otte MJ,Martin V,Slingenbergh J	Mapping H5N1 highly pathogenic avian influenza risk in Southeast Asia.	Proc. Natl. Acad. Sci. U.S.A.	105	4769-74	2008		
30913	16208503	Steele KA, Price AH, Shashidhar HE, Witcombe JR.	Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety.	Theor. Appl. Genet.	112(2)	208-21	2006		
30914	16311724	Kota R, Spielmeyer W, McIntosh RA, Lagudah ES.	Fine genetic mapping fails to dissociate durable stem rust resistance gene Sr2 from pseudo-black chaff in common wheat (Triticum aestivum L.).	Theor. Appl. Genet.	112(3)	492-9	2006		
30915	16331476	Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, Sun CQ.	Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits.	Theor. Appl. Genet.	112(3)	570-80	2006		
30916	16365756	Kao FI, Cheng YY, Chow TY, Chen HH, Liu SM, Cheng CH, Chung MC.	An integrated map of Oryza sativa L. chromosome 5.	Theor. Appl. Genet.	112(5)	891-902	2006		
30917	16395568	Bethel CM, Sciara EB, Estill JC, Bowers JE, Hanna W, Paterson AH.	A framework linkage map of bermudagrass (Cynodon dactylon x transvaalensis) based on single-dose restriction fragments.	Theor. Appl. Genet.	112(4)	727-37	2006		
30918	16432737	Yoon DB, Kang KH, Kim HJ, Ju HG, Kwon SJ, Suh JP, Jeong OY, Ahn SN.	Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O. sativa japonica cultivar Hwaseongbyeo.	Theor. Appl. Genet.	112(6)	1052-62	2006		
30919	16432738	Valarik M, Linkiewicz AM, Dubcovsky J.	A microcolinearity study at the earliness per se gene Eps-A(m)1 region reveals an ancient duplication that preceded the wheat-rice divergence.	Theor. Appl. Genet.	112(5)	945-57	2006	NDK3	Ndk3
30920	16456656	Lu HJ, Fellers JP, Friesen TL, Meinhardt SW, Faris JD.	Genomic analysis and marker development for the Tsn1 locus in wheat using bin-mapped ESTs and flanking BAC contigs.	Theor. Appl. Genet.	112(6)	1132-42	2006		
30921	16463157	Calderini O, Chang SB, de Jong H, Busti A, Paolocci F, Arcioni S, de Vries SC, Abma-Henkens MH, Lankhorst RM, Donnison IS, Pupilli F.	Molecular cytogenetics and DNA sequence analysis of an apomixis-linked BAC in Paspalum simplex reveal a non pericentromere location and partial microcolinearity with rice.	Theor. Appl. Genet.	112(6)	1179-91	2006		
30922	16477428	Wan XY, Wan JM, Jiang L, Wang JK, Zhai HQ, Weng JF, Wang HL, Lei CL, Wang JL, Zhang X, Cheng ZJ, Guo XP.	QTL analysis for rice grain length and fine mapping of an identified QTL with stable and major effects.	Theor. Appl. Genet.	112(7)	1258-70	2006	qGL-3(t) (gl3),qGL-3a	qGL-3(t) (gl3),qGL-3a
30923	16496119	Ueda A, Kathiresan A, Bennett J, Takabe T.	Comparative transcriptome analyses of barley and rice under salt stress.	Theor. Appl. Genet.	112(7)	1286-94	2006		
30924	16501940	Pozzi, C.	Candidate genes for barley mutants involved in plant architecture: an in silico approach.	Theor. Appl. Genet.	112, no. 6	1073	2006	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1
30925	16505997	Upadhyaya NM, Zhu QH, Zhou XR, Eamens AL, Hoque MS, Ramm K, Shivakkumar R, Smith KF, Pan ST, Li S, Peng K, Kim SJ, Dennis ES.	Dissociation (Ds) constructs, mapped Ds launch pads and a transiently-expressed transposase system suitable for localized insertional mutagenesis in rice.	Theor. Appl. Genet.	112(7)	1326-41	2006		
30926	16783595	Shirasawa K, Shiokai S, Yamaguchi M, Kishitani S, Nishio T.	Dot-blot-SNP analysis for practical plant breeding and cultivar identification in rice.	Theor. Appl. Genet.	113(1)	147-55	2006		
30927	16791687	Dong ZY, Wang YM, Zhang ZJ, Shen Y, Lin XY, Ou XF, Han FP, Liu B.	Extent and pattern of DNA methylation alteration in rice lines derived from introgressive hybridization of rice and Zizania latifolia Griseb.	Theor. Appl. Genet.	113(2)	196-205	2006		
30928	16832648	Deng Y, Zhu X, Shen Y, He Z.	Genetic characterization and fine mapping of the blast resistance locus Pigm(t) tightly linked to Pi2 and Pi9 in a broad-spectrum resistant Chinese variety.	Theor. Appl. Genet.	113(4)	705-13	2006	PIZ,PI9,PIGM,PI26	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pigm(t), Pi-gm(t), Pigm,Pi26(t), Pi26
30929	16838138	Nguyen TT, Koizumi S, La TN, Zenbayashi KS, Ashizawa T, Yasuda N, Imazaki I, Miyasaka A.	Pi35(t), a new gene conferring partial resistance to leaf blast in the rice cultivar Hokkai 188.	Theor. Appl. Genet.	113(4)	697-704	2006	PI35,PISH,PI27	Pi35(t),Pi sh, Pish, Pi-sh, Pish(t),Pi27, Pi27(t), Pi-27(t)
30930	16847662	Brown PJ, Klein PE, Bortiri E, Acharya CB, Rooney WL, Kresovich S.	Inheritance of inflorescence architecture in sorghum.	Theor. Appl. Genet.	113(5)	931-42	2006		
30931	16850313	Bao JS, Corke H, Sun M.	Nucleotide diversity in starch synthase IIa and validation of single nucleotide polymorphisms in relation to starch gelatinization temperature and other physicochemical properties in rice (Oryza sativa L.).	Theor. Appl. Genet.	113(7)	1171-83	2006	ALK,WX1,SBE3	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
30932	16850315	Xie X, Song MH, Jin F, Ahn SN, Suh JP, Hwang HG, McCouch SR.	Fine mapping of a grain weight quantitative trait locus on rice chromosome 8 using near-isogenic lines derived from a cross between Oryza sativa and Oryza rufipogon.	Theor. Appl. Genet.	113(5)	885-94	2006		
30933	16874488	MacMillan K, Emrich K, Piepho HP, Mullins CE, Price AH.	Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population. I: a soil-filled box screen.	Theor. Appl. Genet.	113(6)	977-86	2006		
30934	16896706	Brueggeman R, Drader T, Kleinhofs A.	The barley serine/threonine kinase gene Rpg1 providing resistance to stem rust belongs to a gene family with five other members encoding kinase domains.	Theor. Appl. Genet.	113(6)	1147-58	2006		
30935	16896711	Bossolini E, Krattinger SG, Keller B.	Development of simple sequence repeat markers specific for the Lr34 resistance region of wheat using sequence information from rice and Aegilops tauschii.	Theor. Appl. Genet.	113(6)	1049-62	2006		
30936	16896715	MacMillan K, Emrich K, Piepho HP, Mullins CE, Price AH.	Assessing the importance of genotype x environment interaction for root traits in rice using a mapping population II: conventional QTL analysis.	Theor. Appl. Genet.	113(5)	953-64	2006		
30937	16964521	Bao JS, Corke H, Sun M.	Microsatellites, single nucleotide polymorphisms and a sequence tagged site in starch-synthesizing genes in relation to starch physicochemical properties in nonwaxy rice (Oryza sativa L.).	Theor. Appl. Genet.	113(7)	1185-96	2006	SSI,SBE3,WX1,SBE1	OsSSI, SSS 1, SSS1, SS1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
30938	17136372	Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS, McCouch SR.	Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers.	Theor. Appl. Genet.	114(3)	559-68	2007		
30939	17146664	Li D, Chen L, Jiang L, Zhu S, Zhao Z, Liu S, Su N, Zhai H, Ikehashi H, Wan J.	Fine mapping of S32(t), a new gene causing hybrid embryo sac sterility in a Chinese landrace rice (Oryza sativa L.).	Theor. Appl. Genet.	114(3)	515-24	2007	S32,S31	S32-kn , S32-ti ,S32-n,S32(t)(=qSS2) ,S31-gi,S31-un,S31-n,S31(t)
30940	17177062	Sano, Yoshio 	Genetic variations in rice in vitro cultures at the EPSPs-RPS20 region.	Theor. Appl. Genet.	114	705	2007		
30941	17219208	Graner, Andreas 	A 1,000-loci transcript map of the barley genome: new anchoring points for integrative grass genomics.	Theor. Appl. Genet.	114	823	2007		
30942	17219209	Liu QL, Xu XH, Ren XL, Fu HW, Wu DX, Shu QY.	Generation and characterization of low phytic acid germplasm in rice (Oryza sativa L.).	Theor. Appl. Genet.	114	803-14	2007	_,LPA1	OsMIK, LPA,Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
30943	17279367	Li W, Jiang L, Zhou S, Wang C, Liu L, Chen L, Ikehashi H, Wan J.	Fine mapping of pss1, a pollen semi-sterile gene in rice (Oryza sativa L.).	Theor. Appl. Genet.	114(5)	939-46	2007	PSS1	pss1, OsPSS1
30944	17287976	Jing W, Zhang W, Jiang L, Chen L, Zhai H, Wan J.	Two novel loci for pollen sterility in hybrids between the weedy strain Ludao and the Japonica variety Akihikari of rice (Oryza sativa L.).	Theor. Appl. Genet.	114	915-925	2007	S33,S34,S33	S33-id,S33-j.,S33-n,S34-id ,S34-j.,S34-n,S34(t) ,S33(t)
30945	17356864	Hayashi, Takeshi 	Bayesian association mapping of multiple quantitative trait loci and its application to the analysis of genetic variation among Oryza sativa L. germplasms.	Theor. Appl. Genet.	114	1437	2007		
30946	17375281	Komatsuda, T. 	Analysis of the barley chromosome 2 region containing the six-rowed spike gene vrs1 reveals a breakdown of rice-barley micro collinearity by a transposition.	Theor. Appl. Genet.	114	1357	2007		
30947	17406851	Uga Y, Nonoue Y, Liang ZW, Lin HX, Yamamoto S, Yamanouchi U, Yano M.	Accumulation of additive effects generates a strong photoperiod sensitivity in the extremely late-heading rice cultivar 'Nona Bokra'.	Theor. Appl. Genet.	114	1457-66	2007	HD3A,HD4,SE1,HD9,qHD13,HD2,HD9,HD6,HD5	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd4(t), qHD4(t), qHD4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd9(t), qHD9(t),Hd13,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd9, qHd9,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
30948	17479243	Wang J,Wan X,Li H,Pfeiffer WH,Crouch J,Wan J	Application of identified QTL-marker associations in rice quality improvement through a design-breeding approach.	Theor. Appl. Genet.	115	87-100	2007		
30949	17486310	Matsubara K,Ando T,Mizubayashi T,Ito S,Yano M	Identification and linkage mapping of complementary recessive genes causing hybrid breakdown in an intraspecific rice cross.	Theor. Appl. Genet.	115	179-86	2007	HBD3,HBD2	hbd3,OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1
30950	17487470	Yamamoto E,Takashi T,Morinaka Y,Lin S,Kitano H,Matsuoka M,Ashikari M	Interaction of two recessive genes, hbd2 and hbd3, induces hybrid breakdown in rice.	Theor. Appl. Genet.	115	187-94	2007	HBD3,HBD2	hbd3,OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1
30951	17492423	Hori Y,Fujimoto R,Sato Y,Nishio T	A novel wx mutation caused by insertion of a retrotransposon-like sequence in a glutinous cultivar of rice (Oryza sativa).	Theor. Appl. Genet.	115	217-24	2007	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30952	17522835	Lohithaswa HC,Feltus FA,Singh HP,Bacon CD,Bailey CD,Paterson AH	Leveraging the rice genome sequence for monocot comparative and translational genomics.	Theor. Appl. Genet.	115	237-43	2007		
30953	17534593	Saski C,Lee SB,Fjellheim S,Guda C,Jansen RK,Luo H,Tomkins J,Rognli OA,Daniell H,Clarke JL	Complete chloroplast genome sequences of Hordeum vulgare, Sorghum bicolor and Agrostis stolonifera, and comparative analyses with other grass genomes.	Theor. Appl. Genet.	115	571-90	2007		
30954	17534594	Gao YM,Zhu J	Mapping QTLs with digenic epistasis under multiple environments and predicting heterosis based on QTL effects.	Theor. Appl. Genet.	115	325-33	2007		
30955	17551710	Wang J,Raman H,Zhou M,Ryan PR,Delhaize E,Hebb DM,Coombes N,Mendham N	High-resolution mapping of the Alp locus and identification of a candidate gene HvMATE controlling aluminium tolerance in barley (Hordeum vulgare L.).	Theor. Appl. Genet.	115	265-76	2007		
30956	17571251	Schnurbusch T,Collins NC,Eastwood RF,Sutton T,Jefferies SP,Langridge P	Fine mapping and targeted SNP survey using rice-wheat gene colinearity in the region of the Bo1 boron toxicity tolerance locus of bread wheat.	Theor. Appl. Genet.	115	451-61	2007		
30957	17585380	Park DS,Lee SK,Lee JH,Song MY,Song SY,Kwak DY,Yeo US,Jeon NS,Park SK,Yi G,Song YC,Nam MH,Ku YC,Jeon JS	The identification of candidate rice genes that confer resistance to the brown planthopper (Nilaparvata lugens) through representational difference analysis.	Theor. Appl. Genet.	115	537-47	2007	BPH1	Bph1
30958	17593343	Wang LQ,Liu WJ,Xu Y,He YQ,Luo LJ,Xing YZ,Xu CG,Zhang Q	Genetic basis of 17 traits and viscosity parameters characterizing the eating and cooking quality of rice grain.	Theor. Appl. Genet.	115	463-76	2007	ALK,WX1	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
30959	17619853	Srinivasachary,Dida MM,Gale MD,Devos KM	Comparative analyses reveal high levels of conserved colinearity between the finger millet and rice genomes.	Theor. Appl. Genet.	115	489-99	2007		
30960	17622509	Yuan QH,Shi L,Wang F,Cao B,Qian Q,Lei XM,Liao YL,Liu WG,Cheng L,Jia SR	Investigation of rice transgene flow in compass sectors by using male sterile line as a pollen detector.	Theor. Appl. Genet.	115	549-60	2007	BAR	bar
30961	17657469	Cao Y,Duan L,Li H,Sun X,Zhao Y,Xu C,Li X,Wang S	Functional analysis of Xa3/Xa26 family members in rice resistance to Xanthomonas oryzae pv. oryzae.	Theor. Appl. Genet.	115	887-95	2007	XA3,MRKd,MRKa,MRKc	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,MRKd, RKd, TRKd,MRKa, RKa, TRKa,MRKc, RKc, TRKc
30962	17657470	Neeraja CN,Maghirang-Rodriguez R,Pamplona A,Heuer S,Collard BC,Septiningsih EM,Vergara G,Sanchez D,Xu K,Ismail AM,Mackill DJ	A marker-assisted backcross approach for developing submergence-tolerant rice cultivars.	Theor. Appl. Genet.	115	767-76	2007	SUB1	Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1
30963	17657471	Kuroki M,Saito K,Matsuba S,Yokogami N,Shimizu H,Ando I,Sato Y	A quantitative trait locus for cold tolerance at the booting stage on rice chromosome 8.	Theor. Appl. Genet.	115	593-600	2007	qCTB8	qCTB8
30964	17823787	Shirasawa K,Maeda H,Monna L,Kishitani S,Nishio T	The number of genes having different alleles between rice cultivars estimated by SNP analysis.	Theor. Appl. Genet.	115	1067-74	2007		
30965	17846741	Wang H,Zhang H,Gao F,Li J,Li Z	Comparison of gene expression between upland and lowland rice cultivars under water stress using cDNA microarray.	Theor. Appl. Genet.	115	1109-26	2007		
30966	17851647	Yan CJ,Zhou JH,Yan S,Chen F,Yeboah M,Tang SZ,Liang GH,Gu MH	Identification and characterization of a major QTL responsible for erect panicle trait in japonica rice (Oryza sativa L.).	Theor. Appl. Genet.	115	1093-1100	2007	qPE9-2,DEP1	qPE9-2,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
30967	17909744	Jeung JU,Kim BR,Cho YC,Han SS,Moon HP,Lee YT,Jena KK	A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance in rice.	Theor. Appl. Genet.	115	1163-77	2007	PI9,PI40,PIZ5,PIZ,PIZT	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
30968	17924090	Gu K,Sangha JS,Li Y,Yin Z	High-resolution genetic mapping of bacterial blight resistance gene Xa10.	Theor. Appl. Genet.	116	155-63	2008	XA10	Xa10, Xa-10
30969	17952400	Leonard JM,Watson CJ,Carter AH,Hansen JL,Zemetra RS,Santra DK,Campbell KG,Riera-Lizarazu O	Identification of a candidate gene for the wheat endopeptidase Ep-D1 locus and two other STS markers linked to the eyespot resistance gene Pch1.	Theor. Appl. Genet.	116	261-70	2008		
30970	17989953	Zheng X,Wu JG,Lou XY,Xu HM,Shi CH	The QTL analysis on maternal and endosperm genome and their environmental interactions for characters of cooking quality in rice (Oryza sativa L.).	Theor. Appl. Genet.	116	335-342	2008		
30971	18060657	Nishimura H,Ahmed N,Tsugane K,Iida S,Maekawa M	Distribution and mapping of an active autonomous aDart element responsible for mobilizing nonautonomous nDart1 transposons in cultivated rice varieties.	Theor. Appl. Genet.	116	395-405	2008	ADART,NDART1,ClpP5	aDart,nDart, nDART1, nDART,OsClpP5
30972	18074114	Spielmeyer W,Singh RP,McFadden H,Wellings CR,Huerta-Espino J,Kong X,Appels R,Lagudah ES	Fine scale genetic and physical mapping using interstitial deletion mutants of Lr34 /Yr18: a disease resistance locus effective against multiple pathogens in wheat.	Theor. Appl. Genet.	116	481-90	2008		
30973	18075727	Zhao CJ,Wang AR,Shi YJ,Wang LQ,Liu WD,Wang ZH,Lu GD	Identification of defense-related genes in rice responding to challenge by Rhizoctonia solani.	Theor. Appl. Genet.	116	501-16	2008	PR1B	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
30974	18092146	Xie X,Jin F,Song MH,Suh JP,Hwang HG,Kim YG,McCouch SR,Ahn SN	Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa x O. rufipogon cross.	Theor. Appl. Genet.	116	613-22	2008		
30975	18092148	Perugini LD,Murphy JP,Marshall D,Brown-Guedira G	Pm37, a new broadly effective powdery mildew resistance gene from Triticum timopheevii.	Theor. Appl. Genet.	116	417-25	2008		
30976	18097643	Madoka Y,Kashiwagi T,Hirotsu N,Ishimaru K	Indian rice "Kasalath" contains genes that improve traits of Japanese premium rice "Koshihikari".	Theor. Appl. Genet.	116	603-12	2008		
30977	18214422	Chung MC,Lee YI,Cheng YY,Chou YJ,Lu CF	Chromosomal polymorphism of ribosomal genes in the genus Oryza.	Theor. Appl. Genet.	116	745-53	2008		
30978	18219477	Xing YZ,Tang WJ,Xue WY,Xu CG,Zhang Q	Fine mapping of a major quantitative trait loci, qSSP7, controlling the number of spikelets per panicle as a single Mendelian factor in rice.	Theor. Appl. Genet.	116	789-96	2008	qSPP7	qSPP7
30979	18236025	Prigge V,Maurer HP,Mackill DJ,Melchinger AE,Frisch M	Comparison of the observed with the simulated distributions of the parental genome contribution in two marker-assisted backcross programs in rice.	Theor. Appl. Genet.	116	739-44	2008		
30980	18274726	Ando T,Yamamoto T,Shimizu T,Ma XF,Shomura A,Takeuchi Y,Lin SY,Yano M	Genetic dissection and pyramiding of quantitative traits for panicle architecture by using chromosomal segment substitution lines in rice.	Theor. Appl. Genet.	116	881-90	2008	qPBN6,qSBN1	qPBN6,qSBN1
30981		Virmani, S.S.	Development and use of a two-gene marker-aided selection system for fertility restorer genes in rice.	Euphytica	153	35	2007	RF4,RF3	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
30982		Li, P.	Introduction of the PPF1 gene into rice (Oryza sativa L.) results in delayed leaf senescence.	Euphytica	153	257	2007		
30983		Ahmadi, N. 	Genetic diversity of the two cultivated rice species (O. sativa &amp; O. glaberrima) in Maritime Guinea. Evidence for interspecific recombination.	Euphytica	154	127	2007		
30984		Torrizo, Lina	Golden rice: introgression, breeding, and field evaluation.	Euphytica	154	271	2007		
30985		Graham, Robin D.	Quantitative trait loci for phytate in rice grain and their relationship with grain micronutrient content.	Euphytica	154	289	2007		
30986		Ahn, Sang-Nag	Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa.	Euphytica	154	317	2007		
30987		Sano, Yoshio 	Evolutionary significances of cryptic variation in the reaction norm of photoperiod sensitivity of rice (Oryza sativa L.).	Euphytica	155	153	2007	S E1	s e1
30988		Palchamy, Kadirvel	Development of a DNA marker for distinguishing CMS lines from fertile lines in rice (Oryza sativa L.).	Euphytica	156	129	2007		
30989		van Eeuwijk, Fred A. 	QTL-based analysis of genotype-by-environment interaction for grain yield of rice in stress and non-stress environments.	Euphytica	156	213	2007		
30990		Zhang, Guiquan 	Construction and characterization of 3-S Lines, an alternative population for mapping studies in rice (Oryza sativa L.).	Euphytica	156	237	2007		
30991		Suh, Hak Soo 	Use of herbicide-resistant genic male sterility in hybrid rice seed production.	Euphytica	156	297	2007	BAR	bar
30992		Zhang, Guoping 	Genetic analysis of genotype x iron nutrition interaction on coleoptile elongation rate in rice (Oryza sativa L.).	Euphytica	156	311	2007		
30993		Jia, Yulin	Molecular characterization of the recombinant inbred line population derived from a japonica-indica rice cross.	Euphytica	159	73	2008		
30994		Yang, Xian-Ci 	Fixation of hybrid vigor in rice: opportunities and challenges.	Euphytica	160	287	2008		
30995		Virmani, Sant S. 	Comparative genetic analysis and molecular mapping of fertility restoration genes for WA, Dissi, and Gambiaca cytoplasmic male sterility systems in rice.	Euphytica	160	305	2008	RF4,RF3	Rf4* (R1, Rf1), R1, Rf1, RfWA1, Rf4,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
30996		Schrevens, Eddie 	Dealing with sources of variability in the data-analysis of phenotyping experiments with transgenic rice.	Euphytica	160	325	2008		
30997		Eizenga, G. C. 	Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives.	Euphytica	160	339	2008		
30998		Shashidhar, H. E. 	Identification of near-isogenic lines: an innovative approach, validated for root and shoot morphological characters in a mapping population of rice (Oryza sativa L.).	Euphytica	160	357	2008		
30999		Zhang, Gui-Quan 	Characterization of donor genome contents of backcross progenies detected by SSR markers in rice.	Euphytica	160	369	2008		
31000		Wan, Jianmin 	Genetic analysis of a novel dominant rice dwarf mutant 986083D.	Euphytica	160	379	2008	DX,D53	Dx,D53(D K3), DK3, Dwf34, SMXL6/7/8
31001		Sanchez, I. 	Geographical patterns of phenotypic diversity in Oryza sativa landraces of Cote d'Ivoire.	Euphytica	160	389	2008		
31002		Singh, Kuldeep 	Development of high yielding IR64 x Oryza rufipogon (Griff.) introgression lines and identification of introgressed alien chromosome segments using SSR markers.	Euphytica	160	401	2008		
31003		Yamagishi, Junko 	Identification of QTLs controlling rice drought tolerance at seedling stage in hydroponic culture.	Euphytica	160	423	2008		
31004		Oard, James H. 	Development and application of allele-specific PCR assays for imazethapyr resistance in rice (Oryza sativa).	Euphytica	160	431	2008	ALS	OsALS, AHAS
31005	17143630	Jiang L, Zhang W, Xia Z, Jiang G, Qian Q, Li A, Cheng Z, Zhu L, Mao L, Zhai W.	A paracentric inversion suppresses genetic recombination at the FON3 locus with breakpoints corresponding to sequence gaps on rice chromosome 11L.	Mol. Genet. Genomics	277	263-72	2007	FON3	FON3
31006	17180359	Moreno-Risueno MA, Martz M, Vicente-Carbajosa J, Carbonero P.	The family of DOF transcription factors: from green unicellular algae to vascular plants.	Mol. Genet. Genomics	277	379-90	2007		
31007	17237941	Grover A, Aishwarya V, Sharma PC.	Biased distribution of microsatellite motifs in the rice genome.	Mol. Genet. Genomics	277	469-80	2007		
31008	17593393	Zimmer A,Lang D,Richardt S,Frank W,Reski R,Rensing SA	Dating the early evolution of plants: detection and molecular clock analyses of orthologs.	Mol. Genet. Genomics	278	393-402	2007		
31009	17576597	Liu X,Yang Q,Lin F,Hua L,Wang C,Wang L,Pan Q	Identification and fine mapping of Pi39(t), a major gene conferring the broad-spectrum resistance to Magnaporthe oryzae.	Mol. Genet. Genomics	278	403-10	2007	PITA,PI39	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi39(t), Pi39
31010	17579886	Venu RC,Jia Y,Gowda M,Jia MH,Jantasuriyarat C,Stahlberg E,Li H,Rhineheart A,Boddhireddy P,Singh P,Rutger N,Kudrna D,Wing R,Nelson JC,Wang GL	RL-SAGE and microarray analysis of the rice transcriptome after Rhizoctonia solani infection.	Mol. Genet. Genomics	278	421-31	2007		
31011	17636330	Ray S,Agarwal P,Arora R,Kapoor S,Tyagi AK	Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica).	Mol. Genet. Genomics	278	493-505	2007	CDPK11,CDPK20,CDPK30,SPK,CDPK9,CDPK14,CDPK15,CDPK22,CDPK2,CDPK25,CDPK26,CDPK27,CDPK3,CDPK12,CDPK5,CDPK10,CDPK19,CDPK21,CDPK4,CDPK6,CDPK1,CDPK29,CDPK16,CDPK13,CDPK28,CDPK31,CDPK8,CDPK7,CDPK17,CDPK24,CDPK18	OsCDPK11, OsCPK11,OsCDPK20, OsCPK20,OsCDPK30, OsCPK30,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23,OsCDPK9, OsCPK9, CPK9,OsCDPK14, OsCPK14,OsCDPK15, OsCPK15,OsCDPK22, OsCPK22,OsCDPK2, OsCPK2,OsCDPK25, OsCPK25,OsCDPK26, OsCPK26,OsCDPK27, OsCPK27,OsCDPK3, OsCPK3,OsCDPK12, OsCPK12, CPK12,OsCDPK5, OsCPK5,OsCDPK10, OsCPK10, CPK10,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,OsCDPK21, OsCPK21,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK6, OsCPK6,OsCDPK1, OsCPK1,OsCDPK29, OsCPK29,OsCDPK16, OsCPK16,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,OsCDPK28, OsCPK28,OsCDPK31, OsCPK31,OsCDPK8, OsCPK8,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsCDPK24, OsCPK24, OsCDPK14,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18
31012	17680272	Das SK,Pathak RR,Choudhury D,Raghuram N	Genomewide computational analysis of nitrate response elements in rice and Arabidopsis.	Mol. Genet. Genomics	278	519-25	2007		
31013	17665216	Fu BY,Xiong JH,Zhu LH,Zhao XQ,Xu HX,Gao YM,Li YS,Xu JL,Li ZK	Identification of functional candidate genes for drought tolerance in rice.	Mol. Genet. Genomics	278	599-609	2007		
31014	17805575	Sasaki K,Yuichi O,Hiraga S,Gotoh Y,Seo S,Mitsuhara I,Ito H,Matsui H,Ohashi Y	Characterization of two rice peroxidase promoters that respond to blast fungus-infection.	Mol. Genet. Genomics	278	709-22	2007		
31015	18000683	Sharma A,Presting GG	Centromeric retrotransposon lineages predate the maize/rice divergence and differ in abundance and activity.	Mol. Genet. Genomics	279	133-47	2008		
31016	17952471	Suzuki T,Eiguchi M,Kumamaru T,Satoh H,Matsusaka H,Moriguchi K,Nagato Y,Kurata N	MNU-induced mutant pools and high performance TILLING enable finding of any gene  mutation in rice.	Mol. Genet. Genomics	279	213-23	2008		
31017	16289622	Rao RS, Muralikrishna G.	Water soluble feruloyl arabinoxylans from rice and ragi: changes upon malting and their consequence on antioxidant activity.	Phytochemistry	67(1)	91-9	2006		
31018	16516937	Zeleny R, Leonard R, Dorfner G, Dalik T, Kolarich D, Altmann F.	Molecular cloning and characterization of a plant alpha1,3/4-fucosidase based on sequence tags from almond fucosidase I.	Phytochemistry	67(7)	641-8	2006		
31019	16777157	Horvath G, Wessjohann L, Bigirimana J, Jansen M, Guisez Y, Caubergs R, Horemans N.	Differential distribution of tocopherols and tocotrienols in photosynthetic and non-photosynthetic tissues.	Phytochemistry	67(12)	1185-95	2006		
31020	17466346	Ahn YO,Zheng M,Bevan DR,Esen A,Shiu SH,Benson J,Peng HP,Miller JT,Cheng CL,Poulton JE,Shih MC	Functional genomic analysis of Arabidopsis thaliana glycoside hydrolase family 35.	Phytochemistry	68	1510-20	2007		
31021	17499824	Fujitani Y,Horiuchi T,Ito K,Sugimoto M	Serine racemases from barley, Hordeum vulgare L., and other plant species represent a distinct eukaryotic group: gene cloning and recombinant protein characterization.	Phytochemistry	68	1530-6	2007		
31022	17524436	Cheng AX,Xiang CY,Li JX,Yang CQ,Hu WL,Wang LJ,Lou YG,Chen XY	The rice (E)-beta-caryophyllene synthase (OsTPS3) accounts for the major inducible volatile sesquiterpenes.	Phytochemistry	68	1632-41	2007	TPS13,TPS3,_	OsTPS13,OsTPS3,OsFPPS1, FPPS1, FPPS, OsFPS
31023	17512025	Iino M,Nomura T,Tamaki Y,Yamada Y,Yoneyama K,Takeuchi Y,Mori M,Asami T,Nakano T,Yokota T	Progesterone: its occurrence in plants and involvement in plant growth.	Phytochemistry	68	1664-73	2007	SBP,MSBP1,MSBP2	OsSBP,OsMSBP1,OsMSBP2, OsMSBP1 
31024	17532018	Yamazoe S,Hasegawa K,Shigemori H	Growth inhibitory indole acetic acid polyacetylenic ester from Japanese ivy (Hedera rhombea Bean).	Phytochemistry	68	1706-11	2007		
31025	17475294	Huege J,Sulpice R,Gibon Y,Lisec J,Koehl K,Kopka J	GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after 13CO2 labelling.	Phytochemistry	68	2258-72	2007		
31026	17512026	Matsuda F,Wakasa K,Miyagawa H	Metabolic flux analysis in plants using dynamic labeling technique: application to tryptophan biosynthesis in cultured rice cells.	Phytochemistry	68	2290-301	2007		
31027	17628621	Kai K,Wakasa K,Miyagawa H	Metabolism of indole-3-acetic acid in rice: identification and characterization of N-beta-D-glucopyranosyl indole-3-acetic acid and its conjugates.	Phytochemistry	68	2512-22	2007		
31028	18022655	Shi F,Takasaki H,Komatsu S	Quantitative analysis of auxin-regulated proteins from basal part of leaf sheaths in rice by two-dimensional difference gel electrophoresis.	Phytochemistry	69	637-46	2008		
31029	17950386	Lin YZ,Chen HY,Kao R,Chang SP,Chang SJ,Lai EM	Proteomic analysis of rice defense response induced by probenazole.	Phytochemistry	69	715-28	2008	_,PAL1,GSTU17,PAL,_,PAL1,_,ROMT9,_	OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsGSTU17, OsGST23, GST23 ,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL05, PAL05, OsPAL3, PAL5, PAL3,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL04, PAL04, PAL, OsPAL7, PAL7,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7
31030	18045629	Shimizu T,Jikumaru Y,Okada A,Okada K,Koga J,Umemura K,Minami E,Shibuya N,Hasegawa M,Kodama O,Nojiri H,Yamane H	Effects of a bile acid elicitor, cholic acid, on the biosynthesis of diterpenoid  phytoalexins in suspension-cultured rice cells.	Phytochemistry	69	973-81	2008	KS7,CPS4,CPS2,KS4	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16
31031	18191969	Kato A,Kato N,Miyauchi S,Minoshima Y,Adachi I,Ikeda K,Asano N,Watson AA,Nash RJ	Iminosugars from Baphia nitida Lodd.	Phytochemistry	69	1261-5	2008		
31032	16275658	Szeverenyi I, Ramamoorthy R, Teo ZW, Luan HF, Ma ZG, Ramachandran S.	Large-scale systematic study on stability of the Ds element and timing of transposition in rice.	Plant Cell Physiol.	47(1)	84-95	2006	BAR	bar
31033	16275657	Kamiya T, Akahori T, Ashikari M, Maeshima M.	Expression of the vacuolar Ca2+/H+ exchanger, OsCAX1a, in rice: cell and age specificity of expression, and enhancement by Ca2+.	Plant Cell Physiol.	47(1)	96-106	2006	CAX1A	OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a
31034	16284406	Ito Y, Katsura K, Maruyama K, Taji T, Kobayashi M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K.	Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice.	Plant Cell Physiol.	47(1)	141-53	2006	DREB1B,DREB1A	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
31035	16299003	Chen CW, Yang YW, Lur HS, Tsai YG, Chang MC.	A novel function of abscisic acid in the regulation of rice (Oryza sativa L.) root growth and development.	Plant Cell Physiol.	47(1)	1-13	2006		
31036	16306061	Luo A, Qian Q, Yin H, Liu X, Yin C, Lan Y, Tang J, Tang Z, Cao S, Wang X, Xia K, Fu X, Luo D, Chu C.	EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice.	Plant Cell Physiol.	47(2)	181-91	2006	EUI1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
31037	16352697	Jan A, Nakamura H, Handa H, Ichikawa H, Matsumoto H, Komatsu S.	Gibberellin regulates mitochondrial pyruvate dehydrogenase activity in rice.	Plant Cell Physiol.	47(2)	244-53	2006	PDK2,PDK1	OsPDK2,OsPDK1
31038	16614094	Yasuda H, Hayashi Y, Jomori T, Takaiwa F.	The correlation between expression and localization of a foreign gene product in rice endosperm.	Plant Cell Physiol.	47(6)	756-63	2006	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1
31039	16774928	Tsuji H, Saika H, Tsutsumi N, Hirai A, Nakazono M.	Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice.	Plant Cell Physiol.	47(7)	995-1003	2006	ADH1,PDC1	Adh1, Adh1/2, adh1/adh2, OsADH1,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2
31040	16816407	Kojo K, Yaeno T, Kusumi K, Matsumura H, Fujisawa S, Terauchi R, Iba K.	Regulatory mechanisms of ROI generation are affected by rice spl mutations.	Plant Cell Physiol.	47(8)	1035-44	2006	SPL2,SPL7,SPL11	spl2(bl3), spl2, bl3,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,spl11, spl11*, OsPUB11, PUB11
31041	17132630	Murakami M, Tago Y, Yamashino T, Mizuno T.	Comparative Overviews of Clock-Associated Genes of Arabidopsis thaliana and Oryza sativa.	Plant Cell Physiol.	48(1)	110-21	2007	PRR73,ZTL1,HD2,ZTL2,FKF1,PRR95,CCA1,PCL1,PRR59,TOC1,GI	OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,OsZTL1, OsFbox066, OsFbox66, Os_F0484,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,OsFbox609, Os_F0370, OsFKF1,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,OsPCL1,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsGI, Gi, Os-GI
31042	17468126	Jiang PL,Wang CS,Hsu CM,Jauh GY,Tzen JT	Stable oil bodies sheltered by a unique oleosin in lily pollen.	Plant Cell Physiol.	48	812-21	2007		
31043	17517758	Iwai T,Seo S,Mitsuhara I,Ohashi Y	Probenazole-induced accumulation of salicylic acid confers resistance to Magnaporthe grisea in adult rice plants.	Plant Cell Physiol.	48	915-24	2007		
31044	17567639	Fouquaert E,Hanton SL,Brandizzi F,Peumans WJ,Van Damme EJ	Localization and topogenesis studies of cytoplasmic and vacuolar homologs of the  Galanthus nivalis agglutinin.	Plant Cell Physiol.	48	1010-21	2007		
31045	17566055	Sugiura M,Georgescu MN,Takahashi M	A nitrite transporter associated with nitrite uptake by higher plant chloroplasts.	Plant Cell Physiol.	48	1022-35	2007		
31046	17597080	Chang CC,Huang PS,Lin HR,Lu CH	Transactivation of protein expression by rice HSP101 in planta and using Hsp101 as a selection marker for transformation.	Plant Cell Physiol.	48	1098-107	2007	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C
31047	17609219	Imamura T,Kusano H,Kajigaya Y,Ichikawa M,Shimada H	A rice dihydrosphingosine C4 hydroxylase (DSH1) gene, which is abundantly expressed in the stigmas, vascular cells and apical meristem, may be involved in  fertility.	Plant Cell Physiol.	48	1108-20	2007	DSH1,DSH2,DSH3,DSH4,DSH5	DSH1,DSH2,DSH3,DSH4,DSH5
31048	17634180	Koizumi K,Ookawa T,Satoh H,Hirasawa T	A wilty mutant of rice has impaired hydraulic conductance.	Plant Cell Physiol.	48	1219-28	2007		
31049	17693452	Oliver SN,Dennis ES,Dolferus R	ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice.	Plant Cell Physiol.	48	1319-30	2007	MST8,_,MST7,ABA8OX2,ABA1,ABA8OX3,ABA8OX1,NCED2,NCED1,NCED3	OsMST8, OSMST8,OSINV4, OsINV4, INV4, OsCIN3,OsMST7, OSMST7,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2
31050	17804480	Makino A,Sage RF	Temperature response of photosynthesis in transgenic rice transformed with 'sense' or 'antisense' rbcS.	Plant Cell Physiol.	48	1472-83	2007	RBCS	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
31051	18003669	Reid R	Identification of boron transporter genes likely to be responsible for tolerance  to boron toxicity in wheat and barley.	Plant Cell Physiol.	48	1673-8	2007		
31052	17981875	Nozawa A,Nanamiya H,Miyata T,Linka N,Endo Y,Weber AP,Tozawa Y	A cell-free translation and proteoliposome reconstitution system for functional analysis of plant solute transporters.	Plant Cell Physiol.	48	1815-20	2007		
31053	18037673	Ishida K,Yamashino T,Yokoyama A,Mizuno T	Three type-B response regulators, ARR1, ARR10 and ARR12, play essential but redundant roles in cytokinin signal transduction throughout the life cycle of Arabidopsis thaliana.	Plant Cell Physiol.	49	47-57	2008		
31054	18296724	Abe M,Fujiwara M,Kurotani K,Yokoi S,Shimamoto K	Identification of dynamin as an interactor of rice GIGANTEA by tandem affinity purification (TAP).	Plant Cell Physiol.	49	420-32	2008	GI,SE1	OsGI, Gi, Os-GI,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
31055	18252732	Suzuki K,Nagasuga K,Okada M	The chilling injury induced by high root temperature in the leaves of rice seedlings.	Plant Cell Physiol.	49	433-42	2008		
31056	18037610	Sakurai J,Ahamed A,Murai M,Maeshima M,Uemura M	Tissue and cell-specific localization of rice aquaporins and their water transport activities.	Plant Cell Physiol.	49	30-9	2008	TIP2;2,TIP2;1,PIP2;3,PIP2;5,TIP1;1,PIP2A	OsTIP2;2, TIP2-2,OsTIP2;1, TIP2-1, TIP2,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP2;5, PIP2-5,OsTIP1;1, TIP1-1, rTIP1,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1
31057	16944204	Sarhan, Fathey 	Putative fasciclin-like arabinogalactan-proteins (FLA) in wheat (Triticum aestivum) and rice (Oryza sativa): identification and bioinformatic analyses [electronic resource].	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	276(5)	478-494	2006		
31058	17103227	Francki, Michael G. 	Arabidopsis-rice-wheat gene orthologues for Na transport and transcript analysis in wheat-L. elongatum aneuploids under salt stress.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	277	199-212	2007	NHX1	OsNHX1
31059	17216490	Toriba,T., Harada,K., Takamura,A., Nakamura,H., Ichikawa,H., Suzaki,T. and Hirano,H.	Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	277	457-468	2007	YAB7,YAB6,YAB1,YAB4,YAB3,YAB5,SH1	OsYAB7,OsYAB6, OsYAB5,OsYAB1, FIL1, osFIL1,OsYAB4, OsYAB7, TOB2, ,OsYAB3, OsYAB4, TOB3,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1
31060	17404758	He, Chaozu 	The rice OsLOL2 gene encodes a zinc finger protein involved in rice growth and disease resistance.	Molecular Genetics & Genomics (Molecular General Genetics up to 2001)	278	85-94	2007	KS1,LOL2,PR1B	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsLOL2, OsLSD5, OsLOL5, LOL5,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
31061	17169384	Komatsu, S.	A proteomics approach for identifying osmotic-stress-related proteins in rice [electronic resource].	Phytochemistry	68(4)	426-437	2007		
31062	17078983	Edwards, R.	Carboxylesterase activities toward pesticide esters in crops and weeds [electronic resource].	Phytochemistry	67(23)	2561-2567	2006		
31063	17379698	Makino, Amane	Increased Rubisco Content in Transgenic Rice Transformed with the 'Sense' rbcS Gene.	Plant Cell Physiol.	48(4)	626-637	2007	_,_,_,_,RBCL,RBCS	RbcS1, OsRBCS1, OsRbcS1,RbcS5, OsRBCS5, OsRbcS5,RbcS, RbcS4, OsRBCS4, OsRbcS4,RbcS3, OsRBCS3, OsRbcS3, rbcS ,rbcL, rbcA, OsrbcL,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
31064	17412736	Iino, Moritoshi	Identification of the Gravitropism-Related Rice Gene LAZY1 and Elucidation of LAZY1-Dependent and -Independent Gravity Signaling Pathways.	Plant Cell Physiol.	48(5)	678-688	2007	LAZY1	lazy1, LA1, OsLazy1
31065	16990289	An, Gynheung	Identification of Active Transposon dTok, a Member of the hAT Family, in Rice.	Plant Cell Physiol.	47(11)	1473-1483	2006	FON1,MP2,DTOK0	OsFON1, fon1, OsRLCK219, RLCK219,mp2,dTok0
31066	16339852	Isshiki M, Tsumoto A, Shimamoto K.	The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.	Plant Cell	18(1)	146-58	2006	RSZP37A,SCL26,RSZP37B,SRP33B,RSP33,RSp29,SRP20,RSZP39,SCL30B,SRP33B,SC35C,SC35B,RSZP23,SCL26,RSZP36,SRP33A,RSZP21B,SRP32,RSP29,SCL25,RSZP21A,SCL30A,SC35A	Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a,SCL26,Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b,SRp33b,OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2,RSp29,Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20,Os-RS2Z39, OsRS2Z39, Os-RSZ39, OsRSZ39,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b,Os-SC25, OsSC25, Os-SC35c, OsSC35c,OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b,Os-RSZ23, OsRSZ23, Os-RSZp23, OsRSZp23,Os-SCL26, OsSCL26,Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36,Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a,Os-RSZ21, OsRSZ21, RSZ21, Os-RSZp21b, OsRSZp21b,Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32,OsRS29, Os-RS29, OsRSp29, Os-RSp29,Os-SCL25, OsSCL25,Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a,Os-SCL30a, OsSCL30a, SCL30a,Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a
31067	16452510	Hartweck LM, Olszewski NE.	Rice GIBBERELLIN INSENSITIVE DWARF1 is a gibberellin receptor that illuminates and raises questions about GA signaling.	Plant Cell	18(2)	278-82	2006	GID1	gid1, OsGID1, Thl, Os GID1
31068	16399802	Bortiri E, Chuck G, Vollbrecht E, Rocheford T, Martienssen R, Hake S.	ramosa2 encodes a LATERAL ORGAN BOUNDARY domain protein that determines the fate of stem cells in branch meristems of maize.	Plant Cell	18(3)	574-85	2006	RA2	ra2, Osra2, OsCrll4, CRL1L4, OsRA2
31069	16829590	Wang W, Zheng H, Fan C, Li J, Shi J, Cai Z, Zhang G, Liu D, Zhang J, Vang S, Lu Z, Wong GK, Long M, Wang J.	High rate of chimeric gene origination by retroposition in plant genomes.	Plant Cell	18(8)	1791-802	2006		
31070	16877494	Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J.	Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere.	Plant Cell	18(9)	2123-33	2006	CENH3	CENH3, CenH3
31071	16935986	Mulvenna JP, Mylne JS, Bharathi R, Burton RA, Shirley NJ, Fincher GB, Anderson MA, Craik DJ.	Discovery of cyclotide-like protein sequences in graminaceous crop plants: ancestral precursors of circular proteins?	Plant Cell	18(9)	2134-44	2006		
31072	16905658	Chen PW, Chiang CM, Tseng TH, Yu SM.	Interaction between rice MYBGA and the gibberellin response element controls tissue-specific sugar sensitivity of alpha-amylase genes.	Plant Cell	18(9)	2326-40	2006	AMY3E,AMY3D	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
31073	17041148	Yang G, Weil CF, Wessler SR.	A rice Tc1/mariner-like element transposes in yeast.	Plant Cell	18(10)	2469-78	2006	MAR5	Osmar5
31074	17056708	Park G, Xue C, Zhao X, Kim Y, Orbach M, Xu JR.	Multiple upstream signals converge on the adaptor protein Mst50 in Magnaporthe grisea.	Plant Cell	18(10)	2822-35	2006		
31075	17056706	Oide S, Moeder W, Krasnoff S, Gibson D, Haas H, Yoshioka K, Turgeon BG.	NPS6, encoding a nonribosomal peptide synthetase involved in siderophore-mediated iron metabolism, is a conserved virulence determinant of plant pathogenic ascomycetes.	Plant Cell	18(10)	2836-53	2006		
31076	17098810	Kim DW, Lee SH, Choi SB, Won SK, Heo YK, Cho M, Park YI, Cho HT.	Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns.	Plant Cell	18(11)	2958-70	2006		
31077	17138695	Li N, Zhang DS, Liu HS, Yin CS, Li XX, Liang WQ, Yuan Z, Xu B, Chu HW, Wang J, Wen TQ, Huang H, Luo D, Ma H, Zhang DB.	The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development.	Plant Cell	18(11)	2999-3014	2006	CP1,TDR,OSC6	OsCP1, Os CP1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6
31078	17138699	Jung KH, Han MJ, Lee DY, Lee YS, Schreiber L, Franke R, Faust A, Yephremov A, Saedler H, Kim YW, Hwang I, An G.	Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development.	Plant Cell	18(11)	3015-32	2006	WDA1	OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5
31079	17114350	Maruyama-Nakashita A, Nakamura Y, Tohge T, Saito K, Takahashi H.	Arabidopsis SLIM1 is a central transcriptional regulator of plant sulfur response and metabolism.	Plant Cell	18(11)	3235-51	2006		
31080	17209124	Lam SK, Siu CL, Hillmer S, Jang S, An G, Robinson DG, Jiang L.	Rice SCAMP1 Defines Clathrin-Coated, trans-Golgi-Located Tubular-Vesicular Structures as an Early Endosome in Tobacco BY-2 Cells.	Plant Cell	19	296-319	2007	SCAMP1	Scamp1, OsSCAMP1
31081	17586655	Shitsukawa N,Tahira C,Kassai K,Hirabayashi C,Shimizu T,Takumi S,Mochida K,Kawaura K,Ogihara Y,Murai K	Genetic and epigenetic alteration among three homoeologous genes of a class E MADS box gene in hexaploid wheat.	Plant Cell	19	1723-37	2007	LHS1,MADS7	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
31082	17586654	Hong JP,Byun MY,Koo DH,An K,Bang JW,Chung IK,An G,Kim WT	Suppression of RICE TELOMERE BINDING PROTEIN 1 results in severe and gradual developmental defects accompanied by genome instability in rice.	Plant Cell	19	1770-81	2007	RTBP1	rtbp1, TBP1, OsTBP1
31083	17586658	Xiang Y,Huang X,Wang T,Zhang Y,Liu Q,Hussey PJ,Ren H	ACTIN BINDING PROTEIN 29 from Lilium pollen plays an important role in dynamic actin remodeling.	Plant Cell	19	1930-46	2007		
31084	17601827	Shimono M,Sugano S,Nakayama A,Jiang CJ,Ono K,Toki S,Takatsuji H	Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance.	Plant Cell	19	2064-76	2007	NH1,PR10A,_,CYP709C9,GSTU4,LOX11,PR1B,WRKY76,PR1A,WRKY19,WRKY45,WRKY62	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsSGT, SGT, UGT74H3,OsCYP709C9,OsGSTU4,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsWRKY19,OsWRKY45,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10
31085	17720868	Gingerich DJ,Hanada K,Shiu SH,Vierstra RD	Large-scale, lineage-specific expansion of a bric-a-brac/tramtrack/broad complex  ubiquitin-ligase gene family in rice.	Plant Cell	19	2329-48	2007		
31086	17766403	Lu CA,Lin CC,Lee KW,Chen JL,Huang LF,Ho SL,Liu HJ,Hsing YI,Yu SM	The SnRK1A protein kinase plays a key role in sugar signaling during germination  and seedling growth of rice.	Plant Cell	19	2484-99	2007	OSK1,_,OSK4,AMY3D	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a,OsMYBS1, MYBS1, Os-MYBS1, Mybs1,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
31087	17704215	Skamnioti P,Gurr SJ	Magnaporthe grisea cutinase2 mediates appressorium differentiation and host penetration and is required for full virulence.	Plant Cell	19	2674-89	2007		
31088	17890377	Takahashi A,Agrawal GK,Yamazaki M,Onosato K,Miyao A,Kawasaki T,Shimamoto K,Hirochika H	Rice Pti1a negatively regulates RAR1-dependent defense responses.	Plant Cell	19	2940-51	2007	PISH,PI19	Pi sh, Pish, Pi-sh, Pish(t),Pi19(t), Pi14, Pi19
31089	17965272	Hayama R,Agashe B,Luley E,King R,Coupland G	A circadian rhythm set by dusk determines the expression of FT homologs and the short-day photoperiodic flowering response in Pharbitis.	Plant Cell	19	2988-3000	2007	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
31090	17965273	Hirano K,Nakajima M,Asano K,Nishiyama T,Sakakibara H,Kojima M,Katoh E,Xiang H,Tanahashi T,Hasebe M,Banks JA,Ashikari M,Kitano H,Ueguchi-Tanaka M,Matsuoka M	The GID1-mediated gibberellin perception mechanism is conserved in the Lycophyte  Selaginella moellendorffii but not in the Bryophyte Physcomitrella patens.	Plant Cell	19	3058-79	2007	GID1,GID2	gid1, OsGID1, Thl, Os GID1,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e
31091	18083909	Chhun T,Aya K,Asano K,Yamamoto E,Morinaka Y,Watanabe M,Kitano H,Ashikari M,Matsuoka M,Ueguchi-Tanaka M	Gibberellin regulates pollen viability and pollen tube growth in rice.	Plant Cell	19	3876-88	2007	GID1,SLR1,KS1,CPS1,D35,GID2,KAO,GAMYB	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB
31092	18156215	Wong HL,Pinontoan R,Hayashi K,Tabata R,Yaeno T,Hasegawa K,Kojima C,Yoshioka H,Iba K,Kawasaki T,Shimamoto K	Regulation of rice NADPH oxidase by binding of Rac GTPase to its N-terminal extension.	Plant Cell	19	4022-34	2007	RAC2,RAC3,RAC4,RAC5,RAC6,RAC7,RBOHI,RBOHF,RBOHC,RBOHG,RBOHD,RAC1,RBOHH,RBOHA,RBOHE,RBOHB	OsRAC2, OsRac2, Os Rac2,OsRAC3, OsRac3, Os Rac3,OsRAC4, OsRac4, Os Rac4,OsRAC5, OsRac5, Os Rac5,OsRAC6, OsRac6, Os Rac6,OsRAC7, OsRac7, Os Rac7,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,rbohH, OsrbohH, Os rbohH, OsNox9, OsRboh9, Os-RbohH, RbohH ,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB 
31093	18156216	Thao NP,Chen L,Nakashima A,Hara S,Umemura K,Takahashi A,Shirasu K,Kawasaki T,Shimamoto K	RAR1 and HSP90 form a complex with Rac/Rop GTPase and function in innate-immune responses in rice.	Plant Cell	19	4035-45	2007	HSP90,HSP70,RAC1	OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsHSP70, OsEnS-45, EnS-45,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
31094	17918309	Eckardt NA	GA perception and signal transduction: molecular interactions of the GA receptor  GID1 with GA and the DELLA protein SLR1 in rice.	Plant Cell	19	2095-7	2007	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
31095	18223036	Lee JH,Terzaghi W,Gusmaroli G,Charron JB,Yoon HJ,Chen H,He YJ,Xiong Y,Deng XW	Characterization of Arabidopsis and Rice DWD Proteins and Their Roles as Substrate Receptors for CUL4-RING E3 Ubiquitin Ligases.	Plant Cell	20	152-67	2008		
31096	18263775	Li X,Wang X,He K,Ma Y,Su N,He H,Stolc V,Tongprasit W,Jin W,Jiang J,Terzaghi W,Li S,Deng XW	High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression.	Plant Cell	20	259-76	2008		
31097	18178768	Salse J,Bolot S,Throude M,Jouffe V,Piegu B,Quraishi UM,Calcagno T,Cooke R,Delseny M,Feuillet C	Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution.	Plant Cell	20	11-24	2008		
31098	17220363	Chen FC, Wang SS, Chaw SM, Huang YT, Chuang TJ.	PGAA, a Plant Genome Annotation Pipeline for Rice Gene and Alternatively Spliced Variant Identification with Cross-species EST Conservation from Seven Plant Species.	Plant Physiol.	143	1086-95	2007		
31099	17172291	Dardick C, Chen J, Richter T, Ouyang S, Ronald P.	The Rice Kinase Database. A Phylogenomic Database for the Rice Kinome.	Plant Physiol.	143	579-86	2006		
31100	17189339	Kleffmann T, von Zychlinski A, Russenberger D, Hirsch-Hoffmann M, Gehrig P, Gruissem W, Baginsky S.	Proteome Dynamics during Plastid Differentiation in Rice (Oryza sativa L.).	Plant Physiol.	143	912-23	2006		
31101	17449648	McSteen P,Malcomber S,Skirpan A,Lunde C,Wu X,Kellogg E,Hake S	barren inflorescence2 Encodes a co-ortholog of the PINOID serine/threonine kinase and is required for organogenesis during inflorescence and vegetative development in maize.	Plant Physiol.	144	1000-11	2007	BIF2	bif2, Osbif2, OsBIF2, OsPID, PID
31102	17535819	Xiang Y,Huang Y,Xiong L	Characterization of stress-responsive CIPK genes in rice for stress tolerance improvement.	Plant Physiol.	144	1416-28	2007	CIPK21,CIPK22,CIPK23,CIPK25,CIPK26,CIPK27,CIPK16,CIPK29,CIPK17,CIPK18,CIPK15,CIPK14,CIPK13,CIPK28,CIPK05,CIPK10,PK4,CIPK11,CIPK20,CIPK30,CIPK06,CIPK07,CIPK09,CIPK08,CIPK24,CIPK01,CIPK02,CIPK03,CIPK04,PK7	OsCIPK21,OsCIPK22,OsCIPK23, Os-CIPK23,OsCIPK25,OsCIPK26,OsCIPK27,OsCIPK16,OsCIPK29,OsCIPK17,OsCIPK18,OsCIPK15,OsCIPK14,OsCIPK13,OsCIPK28,OsCIPK05, CIPK5, OsCIPK5, OsSTA7,OsCIPK10, CIPK10, OsCIPK10,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19,OsCIPK11, CIPK11, OsMSURPK2, OsCIPK11,OsCIPK20,OsCIPK30,OsCIPK06, CIPK6, OsCIPK6 ,OsCIPK07, CIPK7, OsCIPK7,OsCIPK09, CIPK9, OsCIPK9,OsCIPK08, CIPK8, OsCIPK8,OsCIPK24, SOS2, OsSOS2,OsCIPK01, CIPK1, OsCIPK1,OsCIPK02, CIPK2, OsCIPK2,OsCIPK03, CIPK3, OsCIPK3,OsCIPK04, CIPK4, OsCIPK4,OsPK7, OsPK07, OsCIPK12, CIPK12
31103	17468215	Huang L,Sun Q,Qin F,Li C,Zhao Y,Zhou DX	Down-regulation of a SILENT INFORMATION REGULATOR2-related histone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice.	Plant Physiol.	144	1508-19	2007	SRT1,_,_,_,_,_,_,_,JIOSPR10	srt1*, srt1,OsSAG12,OsSAG13,HSR203J,osSRT702, OsSRT2,Oschib1, PR-8, PR8, OsPR8,HSR201,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,JIOsPR10, OsPR10, PR10 
31104	17496110	Ner-Gaon H,Leviatan N,Rubin E,Fluhr R	Comparative cross-species alternative splicing in plants.	Plant Physiol.	144	1632-41	2007		
31105	17556508	Shultz RW,Tatineni VM,Hanley-Bowdoin L,Thompson WF	Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice.	Plant Physiol.	144	1697-714	2007	_,ORC5,ORC6,MCM7,MCM6,POLA2,POLA3,POLA4,POLD4,POLD3,PSF1,PSF2,PSF3,RNASEH2,ORC2,CDC45-2,ORC1,CDC45-1,ORC4,ORC3,MCM5,CDC6,MCM2,MCM3,MCM4,MCM10,MCM9,NOC3,MCM8	OSPOLA, Ospolalpha,OsORC5,OsORC6,OsMCM7,OsMCM6,POLA2,POLA3,POLA4,POLD4,POLD3,PSF1,PSF2,PSF3,RNASEH2,OsORC2,OsCDC45, CDC45,OsORC1,CDC45, OsCDC45, CDC45A,OsORC4,OsORC3,OsMCM5,OsCDC6,OsMCM2,OsMCM3,OsMCM4,OsMCM10,OsMCM9,NOC3,OsMCM8
31106	17556504	Li M,Xu W,Yang W,Kong Z,Xue Y	Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice.	Plant Physiol.	144	1797-812	2007		
31107	17586689	Obata T,Kitamoto HK,Nakamura A,Fukuda A,Tanaka Y	Rice shaker potassium channel OsKAT1 confers tolerance to salinity stress on yeast and rice cells.	Plant Physiol.	144	1978-85	2007	_,KAT3,KAT2,KAT1,_	OsAKT2,OsKAT3,OsKAT2,OsKAT1,OsAKT1, Os-AKT1, AKT1
31108	17586688	Fujita N,Yoshida M,Kondo T,Saito K,Utsumi Y,Tokunaga T,Nishi A,Satoh H,Park JH,Jane JL,Miyao A,Hirochika H,Nakamura Y	Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and  pleiotropic effects by SSIIIa deficiency in the rice endosperm.	Plant Physiol.	144	2009-23	2007	SSIIIB,SSI,WX1,FLO5	OsSSIIIb. SSIII-1,OsSSI, SSS 1, SSS1, SS1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
31109	17468223	Hecht V,Knowles CL,Vander Schoor JK,Liew LC,Jones SE,Lambert MJ,Weller JL	Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs.	Plant Physiol.	144	648-61	2007		
31110	17468221	Horst I,Welham T,Kelly S,Kaneko T,Sato S,Tabata S,Parniske M,Wang TL	TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase.	Plant Physiol.	144	806-20	2007		
31111	17932303	Thole V,Worland B,Snape JW,Vain P	The pCLEAN dual binary vector system for Agrobacterium-mediated plant transformation.	Plant Physiol.	145	1211-9	2007		
31112	17951464	Campbell MA,Zhu W,Jiang N,Lin H,Ouyang S,Childs KL,Haas BJ,Hamilton JP,Buell CR	Identification and characterization of lineage-specific genes within the Poaceae.	Plant Physiol.	145	1311-22	2007		
31113	17932309	Sindhu A,Langewisch T,Olek A,Multani DS,McCann MC,Vermerris W,Carpita NC,Johal G	Maize Brittle stalk2 encodes a COBRA-like protein expressed in early organ development but required for tissue flexibility at maturity.	Plant Physiol.	145	1444-59	2007	BC1	bc1, bc-1, OsBC1, CWA1, FP1
31114	17951465	Kim SL,Lee S,Kim HJ,Nam HG,An G	OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.	Plant Physiol.	145	1484-94	2007	SE1,RAP1B,MADS51,HD3A,EF1,GI	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS51, OsMADS65, MADS65,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsGI, Gi, Os-GI
31115	17951462	Menges M,Pavesi G,Morandini P,Bogre L,Murray JA	Genomic organization and evolutionary conservation of plant D-type cyclins.	Plant Physiol.	145	1558-76	2007	CYCD1;3,CYCD2;2,CYCD2;3,CYCD4;2,CYCD3;1,CYCD5;2,CYCD1;1,CYCD1;2,CYCD5;3,CYCD6;1,CYCD2;1,CYCD5;1,CYCD3,CYCD7,CYCD7;1,CYCD4;1	CycD1;3, CycD1;os;3, Orysa;CycD1;3, Orysa;CYCD1;3,CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2,CycD2;3, CycD2;os;3, Orysa;CycD2;3, Orysa;CYCD2;3,CycD4;2, CycD4;os;2, Orysa;CycD4;2, Orysa;CYCD4;2,CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1,CycD5;2, CycD5;os;2, Orysa;CycD5;2, Orysa;CYCD5;2,CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1,CycD1;2, CycD1;os;2, Orysa;CycD1;2, Orysa;CYCD1;2,CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3,CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1,CycD2;1, CYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2,CYCD3,CYCD7,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,
31116	17965173	Chen C,Gao M,Liu J,Zhu H	Fungal symbiosis in rice requires an ortholog of a legume common symbiosis gene encoding a Ca2+/calmodulin-dependent protein kinase.	Plant Physiol.	145	1619-28	2007	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
31117	17951455	Cheng L,Wang F,Shou H,Huang F,Zheng L,He F,Li J,Zhao FJ,Ueno D,Ma JF,Wu P	Mutation in nicotianamine aminotransferase stimulated the Fe(II) acquisition system and led to iron accumulation in rice.	Plant Physiol.	145	1647-57	2007		
31118	17704235	Oh CS,Beer SV	AtHIPM, an ortholog of the apple HrpN-interacting protein, is a negative regulator of plant growth and mediates the growth-enhancing effect of HrpN in Arabidopsis.	Plant Physiol.	145	426-36	2007	HIPM	OsHIPM
31119	17827266	Lee S,Kim YY,Lee Y,An G	Rice P1B-type heavy-metal ATPase, OsHMA9, is a metal efflux protein.	Plant Physiol.	145	831-42	2007	HMA8,_,HMA9,HMA4,HMA6,HMA5	OsHMA6, osHMA8, HMA6,OsHMA4, HMA4,OsHMA9 ,oshma9-1, oshma9-2, HMA9,OsHMA7, osHMA4, HMA7,OsHMA5, osHMA6, HMA5,OsHMA8, osHMA5, HMA8
31120	17905867	Ma JF,Yamaji N,Tamai K,Mitani N	Genotypic difference in silicon uptake and expression of silicon transporter genes in rice.	Plant Physiol.	145	919-24	2007	LSI2,LSI1	Lsi2, SIET1, OsLsi2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31121	17993541	Qu S,Desai A,Wing R,Sundaresan V	A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants.	Plant Physiol.	146	189-99	2008		
31122	17981989	Ahn IP	Glufosinate ammonium-induced pathogen inhibition and defense responses culminate  in disease protection in bar-transgenic rice.	Plant Physiol.	146	213-27	2008		
31123	17993543	Danilevskaya ON,Meng X,Hou Z,Ananiev EV,Simmons CR	A genomic and expression compendium of the expanded PEBP gene family from maize.	Plant Physiol.	146	250-64	2008		
31124	18065552	Nijhawan A,Jain M,Tyagi AK,Khurana JP	Genomic survey and gene expression analysis of the basic leucine zipper transcription factor family in rice.	Plant Physiol.	146	333-50	2008	OSBZ8,TRAB1,BZIP62,BZIP70,BZIP39,BZIP13,BZIP22,BZIP31,BZIP51,BZIP69,BZIP89,OBF1,BZIP53,BZIP74,BZIP42,BZIP37,TFX1,BZIP18,ABI5,BZIP57,BZIP50,RISBZ5,BZIP23,BZIP46,RISBZ1,_,ZIP2A,ZIP1A,BZIP54,BZIP61,BZIP64,BZIP65,RF2A,BZIP76,BZIP82,BZIP83,RSG,BZIP85,LG2,BZIP88,RISBZ4,RITA1,BZIP6,BZIP14,BZIP17,BZIP19,BZIP21,BZIP26,BZIP25,BZIP27,BZIP29,BZIP32,RF2B,BZIP35,BZIP36,BZIP40,BZIP43,BZIP44,BZIP45,BZIP47,BZIP49,BZIP56,BZIP48,BZIP7,BZIP55,BZIP71,BZIP1,BZIP34,BZIP8,BZIP67,BZIP68,BZIP78,BZIP79,BZIP81,REB,LIP19,BZIP2,BZIP16,BZIP41,BZIP63,BZIP4,BZIP59,BZIP77,BZIP3,BZIP72,BZIP9,BZIP24,BZIP12,BZIP60,BZIP28	OsBZ8, OsbZIP05,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsbZIP62, OsABF8, OsEEL, EEL,OsbZIP70,OsbZIP39, bZIP39,OsbZIP13,OsbZIP22,OsbZIP31,OsbZIP51,OsbZIP69, OsFD4,OsbZIP89,OsOBF1, OsbZIP87,OsbZIP53, APIP5 ,OsbZIP74, OsTGA10, TGA10 ,OsbZIP42, OsABF7, ABF7, HBF1,OsTGAP1, TGAP1, OsbZIP37,OsbZIP73, bZIP73, OsTFX1,OsbZIP18,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsbZIP57,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsbZIP52,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsZIP-2b,OsbZIP80, OsZIP-2a,OsbZIP86, OsZIP-1a,OsbZIP54, OsFD6,OsbZIP61,OsbZIP64,OsbZIP65,RF2a, OsbZIP75,OsbZIP76,OsbZIP82,OsbZIP83,OsbZIP84, BZIP84,OsbZIP85,OsLG2, OsbZIP11, BZIP11,OsbZIP88,OsbZIP15,OsbZIP20, RITA-1, RISBZ3,OsbZIP06, OsbZIP6,OsbZIP14,OsbZIP17,OsbZIP19,OsbZIP21,OsbZIP26,OsbZIP25,OsbZIP27,OsbZIP29,OsbZIP32,RF2b, OsbZIP30,OsbZIP35,OsbZIP36,OsbZIP40,OsbZIP43,OsbZIP44,OsbZIP45,OsbZIP47,OsbZIP49,OsbZIP56, OsFD5,OsbZIP48, OsHY5, HY5,OsbZIP07, OsbZIP7,OsbZIP55, OsFD2,OsbZIP71,OsbZIP01, OsbZIP1,OsbZIP34,OsbZIP08, OsbZIP8, OsTGA2, TGA2, OsTGA2/OsbZIP28,OsbZIP67,OsbZIP68,OsbZIP78,OsbZIP79,OsbZIP81,OsZIP33, RISBZ2, OsbZIP33,Lip19, lip19, OsbZIP38,OsbZIP02, OsbZIP2, OsSTA8,OsbZIP16, OsSTA51,OsbZIP41, TGA1 ,OsbZIP63,OsbZIP04, OsbZIP4,OsbZIP59, BIP125,OsbZIP77, OsFD1, FD1,OsbZIP03, OsbZIP3, OsHBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3,OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2,OsbZIP24, OsFD3, FD3,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2,OsbZIP60, bZIP60,OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08
31125	18156295	Kerk D,Templeton G,Moorhead GB	Evolutionary radiation pattern of novel protein phosphatases revealed by analysis of protein data from the completely sequenced genomes of humans, green algae, and higher plants.	Plant Physiol.	146	351-67	2008		
31126	18032588	Kronmiller BA,Wise RP	TEnest: automated chronological annotation and visualization of nested plant transposable elements.	Plant Physiol.	146	45-59	2008		
31127	18083797	Yang JL,Li YY,Zhang YJ,Zhang SS,Wu YR,Wu P,Zheng SJ	Cell wall polysaccharides are specifically involved in the exclusion of aluminum  from the rice root apex.	Plant Physiol.	146	602-11	2008		
31128	16403737	Kurata N, Yamazaki Y.	Oryzabase. An integrated biological and genome information database for rice.	Plant Physiol.	140(1)	39789	2006		
31129	16361516	Wang X, Xu Y, Han Y, Bao S, Du J, Yuan M, Xu Z, Chong K.	Overexpression of RAN1 in rice and Arabidopsis alters primordial meristem, mitotic progress, and sensitivity to auxin.	Plant Physiol.	140(1)	91-101	2006		
31130	16407444	Nakano T, Suzuki K, Fujimura T, Shinshi H.	Genome-wide analysis of the ERF gene family in Arabidopsis and rice.	Plant Physiol.	140(2)	411-32	2006	ERF68,DREB1B,ERF77,SUB1C,ERF105,ERF104,EREBP1,ERF134,FZP,ERF91,DREB2A,ERF92,ERF7,ERF8,ERF11,ERF13,ERF16,ERF23,ERF45,ERF57,ERF65,ERF112,ERF120,ERF128,ERF135,ERF138,ERF74,ERF82,ERF84,ERF87,ERF89,ERF109,ERF110,ERF111,ERF113,ERF119,ERF121,ERF122,ERF125,ERF126,ERF129,ERF130,ERF132,ERF69,ERF79,ERF80,ERF81,ERF83,ERF85,ERF86,ERF90,ERF94,ERF97,ERF17,ERF18,ERF88,ERF53,ERF95,ERF61,ERF72,ERF50,ERF19,ERF21,ERF32,ERF36,ERF37,ERF39,ERF43,ERF46,ERF47,ERF49,ERF51,ERF52,ERF54,ERF55,ERF56,ERF117,ERF137,ERF41,ERF136,DREB1D,ERF58,ERF96,ERF22,ERF139,ERF1,ERF108,ERF114,ERF131,ERF76,ERF93,ERF127,ERF123,ERF66,ERF67,ERF20,ERF59,ERF15,ERF4,ERF5,ERF6,ERF10,ERF9,ERF14,ERF98,ERF107,ERF103,ERF100,ERF118,ERF124,ERF38,ERF35,ERF28,ERF33,ERF34,ERF64,ERF44,ERF106,ERF99,SUB1B,ERF2,DREB1F,ERF42,ERF115,EBP-89,ERF12,ERF133,DREB1G,ERF3,ERF62,ERF101,DREB1A,DREB1C,ERF71,ERF48,ERF102,DREB1E,ERF3	OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsAP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142,OsERF#008, OsERF008, OsERF8, AP2/EREBP#128, AP2/EREBP128,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83,OsERF#013, OsERF013, OsERF13, AP2/EREBP#143, AP2/EREBP143,OsERF#016, OsERF016, OsERF16, AP2/EREBP#055, AP2/EREBP55,OsERF#023, OsERF023, OsERF23, AP2/EREBP#144, AP2/EREBP144,OsERF#045, OsERF045, OsERF45, AP2/EREBP#119, AP2/EREBP119,OsERF#057, OsERF057, OsERF57, AP2/EREBP#145, AP2/EREBP145,OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107,OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9,OsERF#120, OsERF120, AP2/EREBP#105, AP2/EREBP105,OsERF#128, OsERF128, AP2/EREBP#034, AP2/EREBP34,OsERF#135, OsERF135,OsERF#138, OsERF138, AP2/EREBP#108, AP2/EREBP108,OsERF#074, OsERF074, OsERF74, AP2/EREBP#051, AP2/EREBP51,OsERF#082, OsERF082, OsERF82, AP2/EREBP#035, AP2/EREBP35,OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97,OsERF#087, OsERF087, OsERF87, AP2/EREBP#067, AP2/EREBP67,OsERF#089, OsERF089, OsERF89, AP2/EREBP#154, AP2/EREBP154,OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63,OsERF#110, OsERF110, AP2/EREBP#008, AP2/EREBP8,OsERF#111, OsERF111,OsERF#113, OsERF113, AP2/EREBP#058, AP2/EREBP58,OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104,OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61,OsERF#122, OsERF122, AP2/EREBP#056, AP2/EREBP56,OsERF#125, OsERF125, AP2/EREBP#016, AP2/EREBP16,OsERF#126, OsERF126,OsERF#129, OsERF129, AP2/EREBP#045, AP2/EREBP45,OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165,OsERF#132, OsERF132, AP2/EREBP#010, AP2/EREBP10,OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28,OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17,OsERF#080, OsERF080, OsERF80, AP2/EREBP#069, AP2/EREBP69,OsERF#081, OsERF081, OsERF81, AP2/EREBP#014, AP2/EREBP14,OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163,OsERF#085, OsERF085, OsERF85, AP2/EREBP#151, AP2/EREBP151, AP2/EREBP#062, AP2/EREBP62,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71,OsERF#094, OsERF094, OsERF94, AP2/EREBP#039, AP2/EREBP39,OsERF#097, OsERF097, OsERF97, AP2/EREBP#038, AP2/EREBP38,OsERF#017, OsERF017, OsERF17, AP2/EREBP#091, AP2/EREBP91,OsERF#018, OsERF018, OsERF18, AP2/EREBP#115, AP2/EREBP115,OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23,OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134,OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2 ,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6,OsERF#019, OsERF019, OsERF19, AP2/EREBP#157, AP2/EREBP157,OsERF#021, OsERF021, OsERF21, AP2/EREBP#140, AP2/EREBP140,OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21,OsERF#036, OsERF036, OsERF36, AP2/EREBP#007, AP2/EREBP7,OsERF#037, OsERF037, OsERF37, AP2/EREBP#041, AP2/EREBP41,OsERF#039, OsERF039, OsERF39, AP2/EREBP#002, AP2/EREBP2,OsERF#043, OsERF043, OsERF43, AP2/EREBP#095, AP2/EREBP95,OsERF#046, OsERF046, OsERF46,OsERF#047, OsERF047, OsERF47, AP2/EREBP#121, AP2/EREBP121,OsERF#049, OsERF049, OsERF49, AP2/EREBP#132, AP2/EREBP132,OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156,OsERF#052, OsERF052, OsERF52, AP2/EREBP#053, AP2/EREBP53,OsERF#054, OsERF054, OsERF54, AP2/EREBP#162, AP2/EREBP162,OsERF#055, OsERF055, OsERF55, AP2/EREBP#146, AP2/EREBP146,OsERF#056, OsERF056, OsERF56, AP2/EREBP#164, AP2/EREBP164,OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4,OsERF#137, OsERF137, AP2/EREBP136, AP2/EREBP#136,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsERF#058, OsERF058, OsERF58, AP2/EREBP#032, AP2/EREBP32,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2 ,OsERF#022, OsERF022, OsERF22, AP2/EREBP#087, AP2/EREBP87,OsERF#139, OsERF139,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1,OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2,OsERF#114, OsERF114,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46,OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23,OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66,OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30,OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76,OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G,OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6,OsERF#015, OsERF015, OsERF15, AP2/EREBP#102, AP2/EREBP102,OsERF#004, OsERF004, OsERF4, AP2/EREBP#159, AP2/EREBP159,OsERF#005, OsERF005, OsERF5, AP2/EREBP#072, AP2/EREBP72,OsERF#006, OsERF006, OsERF6, AP2/EREBP#075, AP2/EREBP75,OsERF#010, OsERF010, OsERF10,OsERF#009, OsERF009, OsERF9, AP2/EREBP#135, AP2/EREBP135,OsERF#014, OsERF014, OsERF14, AP2/EREBP#103, AP2/EREBP103,OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120,OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130,OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36,OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1,OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42,OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
31131	16384900	Bethke PC, Hwang YS, Zhu T, Jones RL.	Global patterns of gene expression in the aleurone of wild-type and dwarf1 mutant rice.	Plant Physiol.	140(2)	484-98	2006	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
31132	16384895	Fujiwara M, Umemura K, Kawasaki T, Shimamoto K.	Proteomics of Rac GTPase signaling reveals its predominant role in elicitor-induced defense response of cultured rice cells.	Plant Physiol.	140(2)	734-45	2006	PHB,CPN60,RAC1	prohibitin,chaperonin 60,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
31133	16443699	Fujita N, Yoshida M, Asakura N, Ohdan T, Miyao A, Hirochika H, Nakamura Y.	Function and characterization of starch synthase I using mutants in rice.	Plant Physiol.	140(3)	1070-84	2006	FLO5,SSI,ALK,SSIIIB	OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIb. SSIII-1
31134	16524980	Klimmek F, Sjdin A, Noutsos C, Leister D, Jansson S.	Abundantly and rarely expressed Lhc protein genes exhibit distinct regulation patterns in plants.	Plant Physiol.	140(3)	793-804	2006		
31135	16415213	Gualtieri G, Conner JA, Morishige DT, Moore LD, Mullet JE, Ozias-Akins P.	A segment of the apospory-specific genomic region is highly microsyntenic not only between the apomicts Pennisetum squamulatum and buffelgrass, but also with a rice chromosome 11 centromeric-proximal genomic region.	Plant Physiol.	140(3)	963-71	2006		
31136	16461379	Ytterberg AJ, Peltier JB, van Wijk KJ.	Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes.	Plant Physiol.	140(3)	984-97	2006		
31137	16607027	Grennan AK.	Abiotic stress in rice. An "omic" approach.	Plant Physiol.	140(4)	1139-41	2006		
31138	16607028	Mukherjee K, BEglin TR.	MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins.	Plant Physiol.	140(4)	1142-50	2006		
31139	16607031	Feltus FA, Singh HP, Lohithaswa HC, Schulze SR, Silva TD, Paterson AH.	A comparative genomics strategy for targeted discovery of single-nucleotide polymorphisms and conserved-noncoding sequences in orphan crops.	Plant Physiol.	140(4)	1183-91	2006		
31140	16500991	Charng YY, Liu HC, Liu NY, Hsu FC, Ko SS.	Arabidopsis Hsa32, a novel heat shock protein, is essential for acquired thermotolerance during long recovery after acclimation.	Plant Physiol.	140(4)	1297-305	2006	HSA32	Hsa32, OsPPS1 
31141	16461384	Koga J, Kubota H, Gomi S, Umemura K, Ohnishi M, Kono T.	Cholic acid, a bile acid elicitor of hypersensitive cell death, pathogenesis-related protein synthesis, and phytoalexin accumulation in rice.	Plant Physiol.	140(4)	1475-83	2006		
31142	16531481	Chehab EW, Raman G, Walley JW, Perea JV, Banu G, Theg S, Dehesh K.	Rice HYDROPEROXIDE LYASES with unique expression patterns generate distinct aldehyde signatures in Arabidopsis.	Plant Physiol.	141(1)	121-34	2006	HPL3,AOS4,AOS3	OsHPL3, CYP74B2,OsAOS4, CYP74A4, OsHPL1, HPL1,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2
31143	16684934	McNally KL, Bruskiewich R, Mackill D, Buell CR, Leach JE, Leung H.	Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes.	Plant Physiol.	141(1)	26-31	2006		
31144	16531478	Sauret-GEto S, Botella-Pav} P, Flores-Prez U, Martez-Garc} JF, San Romn C, Len P, Boronat A, Rodruez-Concepcin M.	Plastid cues posttranscriptionally regulate the accumulation of key enzymes of the methylerythritol phosphate pathway in Arabidopsis.	Plant Physiol.	141(1)	75-84	2006		
31145	16760495	Grennan AK.	Gibberellin metabolism enzymes in rice.	Plant Physiol.	141(2)	524-6	2006		
31146	16632592	Drakakaki G, Marcel S, Arcalis E, Altmann F, Gonzalez-Melendi P, Fischer R, Christou P, Stoger E.	The intracellular fate of a recombinant protein is tissue dependent.	Plant Physiol.	141(2)	578-86	2006		
31147	16679424	Bari R, Datt Pant B, Stitt M, Scheible WR.	PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.	Plant Physiol.	141(3)	988-99	2006	LTN1,MIR399F,MIR399D,MIR399A,MIR399J	LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j
31148	16896230	Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D.	Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.	Plant Physiol.	141(4)	1167-84	2006	_,ILI1,_,_,_,RB,_,PIL13,_,PIL12,PIL11,ILI3,_,PIL16,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,DPF,_,_,_,_,_,PTF1,_,_,RC,_,_,EAT1,_,_,_,_,_,_,_,_,_,_,_,_,RHL1,_,LGS1,RA,_,_,_,_,_,_,PIL14,_,_,_,_,_,_,_,_,_,_,_,_,_,LAX1,_,_,_,_,AN1,_,TDR,_,_,_,_,_,UDT1,_	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,ILI1, OsbHLH154, OsILI1,OsbHLH004,OsFBH1, OsbHLH112,OsbHLH155,Rb, Rb*, bhlh165, OsbHLH165,OsbHLH007,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,OsPIL12, OsbHLH103, bHLH103,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2,OsbHLH133, bHLH133, OsRSL8, RSL8,APG, OsPIL16, OsbHLH106,OsbHLH008, bHLH008, OsMYL2, MYL2,OsbHLH011,OsbHLH012,OsbHLH014,OsbHLH022,OsbHLH023,OsbHLH018,OsbHLH019,OsbHLH021,OsbHLH026,OsbHLH027,OsbHLH028,OsbHLH029,OsbHLH030,OsbHLH032,OsbHLH034,OsbHLH036,OsbHLH039,OsbHLH040,OsbHLH041,OsbHLH043,OsbHLH045,OsbHLH046,OsbHLH048,OsbHLH049,OsbHLH050,OsbHLH052,OsbHLH057,OsbHLH058,OsbHLH067,OsbHLH069,OsbHLH070,OsbHLH072,OsbHLH073,OsbHLH074,OsbHLH075,OsbHLH076,OsbHLH077,OsbHLH078,OsbHLH080,OsbHLH084,OsbHLH087,OsbHLH066,OsbHLH101,OsbHLH111,OsbHLH116,OsbHLH117,OsbHLH118,OsbHLH121,OsbHLH122,OsbHLH124,OsbHLH135,OsbHLH136,OsbHLH137,OsbHLH139,OsbHLH140,OsbHLH143,OsbHLH145,OsbHLH149,OsbHLH150,OsbHLH151,OsbHLH156,OsbHLH094, bHLH094, bHLH94,OsbHLH1, OsbHLH062 ,OsbHLH082,OsbHLH097,OsbHLH053, bHLH053, OsSPCH2, SPCH2,OsbHLH054,OsbHLH055,OsbHLH051,OsbHLH100,OsbHLH114,OsbHLH099,OsbHLH015, OsGL3B, GL3B,OsbHLH016, Kala4, OSB2,OsbHLH159,OsbHLH161,OsbHLH167,OsbHLH088,OsbHLH083,OsbHLH085,OsbHLH090,OsbHLH086, TA1,OsbHLH142, bHLH142, TIP2, OsTIP2,OsbHLH033, bHLH033, bHLH33, OsZFP, ZFP ,OsbHLH042, bHLH042,OsbHLH148, bHLH148,OsbHLH162, bHLH162,OsbHLH146, bHLH146, OsZOU-2, OsZOU2, ZOU-2, ZOU2,OsbHLH025, bHLH025, bHLH25,OsbHLH071, bHLH071, bHLH71,OsbHLH120, bHLH120,OsbHLH038,OsbHLH068, bHLH068, bHLH68,OsbHLH037, bHLH037,OsPTF1, OsbHLH096,OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1,OsbHLH109, bHLH109,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,OsbHLH031,OsbHLH024,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsbHLH091, bHLH091,OsbHLH095, bHLH095,OsbHLH061,OsbHLH092,OsbHLH064,OsbHLH110,OsbHLH163, bHLH163, OsHLH61, HLH61,OsbHLH147, bHLH147,OsbHLH158. bHLH158,OsbHLH020, bHLH020, bHLH20,OsbHLH134, bHLH134,OsbHLH105,OsbHLH115, OsRHL1,OsRAI1, RAI1, OsbHLH003, bHLH003, bHLH3,OsbHLH107, bHLH107,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,OsbHLH166, bHLH166,OsbHLH079, OsbHLH79, bHLH079, bHLH79,OsbHLH035, bHLH035, OsbHLH35, bHLH35,OsbHLH047, bHLH047,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsPIL14, OsbHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsbHLH113, bHLH113,OsbHLH044, bHLH044, OsbHLH96, bHLH96, bHLH096,OsbHLH138, bHLH138, OsPIF4, PIF4,OsbHLH108, OsbHLH108/SPT, bHLH108, SPT,OsbHLH127, bHLH127, OsRSL3, RSL3,OsbHLH125, bHLH125, OsRSL1, RSL1 ,OsbHLH126, bHLH126, OsRSL2, RSL2,OsbHLH059, bHLH059, OsbHLH59, bHLH59 ,OsbHLH089, bHLH089, bHLH89,OsbHLH098,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116 ,OsbHLH157, bHLH157,OsLF, LF, OsbHLH119,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,OsbHLH160, bHLH160, SIP19, OsSIP19,OsbHLH128, bHLH128, OsRSL6, RSL6,OsbHLH130, bHLH130, OsRSL9, RSL9,OsbHLH081, bHLH081, OsBC1, BC1,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1,OsbHLH132, bHLH132, OsRSL7, RSL7,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH131, bHLH131, OsRSL5, RSL5,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsbHLH009, bHLH009, OsMYC2, MYC2,OsbHLH129, bHLH129, OsRSL4, RSL4,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsbHLH065, OsbHLH65
31149	16861570	Travella S, Klimm TE, Keller B.	RNA interference-based gene silencing as an efficient tool for functional genomics in hexaploid bread wheat.	Plant Physiol.	142(1)	6-20	2006		
31150	16844829	Arrighi JF, Barre A, Ben Amor B, Bersoult A, Soriano LC, Mirabella R, de Carvalho-Niebel F, Journet EP, Ghardi M, Huguet T, Geurts R, DariEJ, RougP, Gough C.	The Medicago truncatula lysine motif-receptor-like kinase gene family includes NFP and new nodule-expressed genes.	Plant Physiol.	142(1)	265-79	2006		
31151	16891544	Pareek A, Singh A, Kumar M, Kushwaha HR, Lynn AM, Singla-Pareek SL.	Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis.	Plant Physiol.	142(2)	380-97	2006	PRR73,HD2,HK5,RR8,RR1,_,RR26,RR12,RR21,RR24,RR5,RR3,ERS2,RR6,ETR2,ETR3,ETR4,RR4,RR10,RR11,RR13,PHP1,PHP2,RR25,RR27,PRR95,RR22,RR28,RR33,_,_,HK1,HK2,RR29,PHP3,AHP2,ERS1,TOC1,PHYB,AHP1,RR23,HK3,_,PHYC,CKT1,RR9,PRR59,RR2,PHYA,HK4,RR7	OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,rr1, OsRR1, Rra9, OsRRA9,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,OsRR26, Rrb6, Orr6, OsRR16, OsRRB6,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OsRR21, Rrb1, Orr1, OsRR19, OsRRB1, ORR1,OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1,rr5, OsRR5, Rra4, OsRRA4,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsRR6, rr6, Rra6, OsRRA6,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2,PK3, OsPK3, OsETR4, OS-ETR4,rr4, OsRR4, Rra3, OsRRA3,OsRR10, Rra2, OsRRA2, RR2,OsRR11, Rra8, OsRRA8, RR8,OsRR13, Rra12, OsRR12, OsRRA12, RR12,OsPHP1, Hpt1, OsHP3, OsHpt1,OsPHP2, Hpt4, OsHP5, OsHpt4,OsRR25, Rrb3, Orr5, OsRR21, OsRRB3,OsRR27, Rra16, OsPRR5, OsRRA16,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsRR22, Rrb4, Orr2, OsRR20, OsRRB4,OsRR28, Rra22, OsPRR3, OsRRA22,OsRR33, Rra19, OsRRA19,OsRR42, Rra15, OsRR13, OsRRA15,OsPRR10, Rra18, OsRRA18,OsHK1, OHK1,OHK1, HK, OsHK2, Ohk1,OsRR29, Rrb7, OsPRR4, OsRRB7,OsPHP3, Hpt5, OsHP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,phyB, PHYB1, OsPHYB, OsphyB,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2,OsRR23, Rrb5, Orr3, OsRR18, OsRRB5,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b,OsPRR12, Rra17, OsRRA17, OsEnS-61,OsPHYC, OsPHYCa, OsPHYCb,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,rr2, Osrr2, OsRR2, Rra10, OsRRA10,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OHK4, HK, OsHK4, Crl1b, Ohk4,rr7, OsRR7, Rra5, OsRRA5
31152	16905665	Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S.	Whole-plant growth stage ontology for angiosperms and its application in plant biology.	Plant Physiol.	142(2)	414-28	2006		
31153	16920874	Xu P, Zhang Y, Kang L, Roossinck MJ, Mysore KS.	Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants.	Plant Physiol.	142(2)	429-40	2006		
31154	16920880	Cao D, Cheng H, Wu W, Soo HM, Peng J.	Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis.	Plant Physiol.	142(2)	509-25	2006	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
31155	16905666	Wissuwa M, Ismail AM, Yanagihara S.	Effects of zinc deficiency on rice growth and genetic factors contributing to tolerance.	Plant Physiol.	142(2)	731-41	2006		
31156	17012406	Barro RM, Peres A, Droual AM, De Veylder L, Nguyen le SL, De Wolf J, Mironov V, Peerbolte R, Beemster GT, InzD, Broekaert WF, Frankard V.	The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice.	Plant Physiol.	142(3)	1053-64	2006	KRP2,KRP5,KRP3,KRP4,KRP1	OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1 
31157	16998090	Jang CS, Kamps TL, Skinner DN, Schulze SR, Vencill WK, Paterson AH.	Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expression.	Plant Physiol.	142(3)	1148-59	2006		
31158	17012402	Iwai T, Miyasaka A, Seo S, Ohashi Y.	Contribution of ethylene biosynthesis for resistance to blast fungus infection in young rice plants.	Plant Physiol.	142(3)	1202-15	2006	PII,ACS3,ACS5,ACS1,ACO1,ACS2,ACO4,ACO2,ACO3,PII2,ACO5,ACO7,ACS4,SSG6	Pi i, Pii, Pi-i, Pii(t),ACC3*, ACC3, OsACS3, OS-ACS3,OsACS5, OS-ACS5, OsBphi008a,ACC1*, OsACS1, Os-ACS1, ACC1,OsACO1, ACO,OsACS2, Os-ACS2,OsACO4,OsACO2,OsACO3,Pi i2, Pii2, Pii2(t),OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsACO7,OsACS4, OS-ACS4,OsACS6, ACS6
31159	16980566	Yang X, Tuskan GA, Cheng MZ.	Divergence of the Dof gene families in poplar, Arabidopsis, and rice suggests multiple modes of gene evolution after duplication.	Plant Physiol.	142(3)	820-30	2006		
31160	16998087	Lease KA, Walker JC.	The Arabidopsis unannotated secreted peptide database, a resource for plant peptidomics.	Plant Physiol.	142(3)	831-8	2006		
31161	16980567	Miao Y, Yan PK, Kim H, Hwang I, Jiang L.	Localization of green fluorescent protein fusions with the seven Arabidopsis vacuolar sorting receptors to prevacuolar compartments in tobacco BY-2 cells.	Plant Physiol.	142(3)	945-62	2006		
31162	17041027	Shen W, Hanley-Bowdoin L.	Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1- and mammalian AMPK-activating kinases.	Plant Physiol.	142(4)	1642-55	2006		
31163	17071645	Huang S, Spielmeyer W, Lagudah ES, James RA, Platten JD, Dennis ES, Munns R.	A sodium transporter (HKT7) is a candidate for Nax1, a gene for salt tolerance in durum wheat.	Plant Physiol.	142(4)	1718-27	2006	HKT7	OsHKT7, OsHKT1;4, HKT1;4
31164	17098858	Brady SM, Song S, Dhugga KS, Rafalski JA, Benfey PN.	Combining Expression and Comparative Evolutionary Analysis. The COBRA Gene Family.	Plant Physiol.	143(1)	172-87	2007		
31165	17098851	Murcha MW, Elhafez D, Lister R, Tonti-Filippini J, Baumgartner M, Philippar K, Carrie C, Mokranjac D, Soll J, Whelan J.	Characterization of the preprotein and amino Acid transporter gene family in Arabidopsis.	Plant Physiol.	143(1)	199-212	2007		
31166	17098850	Nikolic M, Nikolic N, Liang Y, Kirkby EA, Rmheld V.	Germanium-68 as an adequate tracer for silicon transport in plants. Characterization of silicon uptake in different crop species.	Plant Physiol.	143(1)	495-503	2007		
31168	17259261	Cao, XiaoFeng	SDG714, a Histone H3K9 Methyltransferase, Is Involved in Tos17 DNA Methylation and Transposition in Rice.	Plant Cell	19(1)	9-22	2007	SDG714	SDG714, OsSET5, OsSUVH4
31169	17322409	Valent, Barbara	Roles for Rice Membrane Dynamics and Plasmodesmata during Biotrophic Invasion by the Blast Fungus.	Plant Cell	19(2)	706-724	2007		
31171	16384901	Sopory, S.K.	Transgenic Tobacco Overexpressing Glyoxalase Pathway Enzymes Grow and Set Viable Seeds in Zinc-Spiked Soils.	Plant Physiol.	140(2)	613-623	2006		
31172	17142475	Rhee, Seung Y.	The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant.	Plant Physiol.	143(2)	587-599	2007		
31173	17259288	Kim CM, Park SH, Je BI, Park SH, Park SJ, Piao HL, Eun MY, Dolan L, Han CD	OsCSLD1, a Cellulose Synthase-Like D1 Gene, Is Required for Root Hair Morphogenesis in Rice.	Plant Physiol.	143(3)	1220-230	2007	CSLD1	csld1, OsCSLD1, OsCslD1
31174	17220362	Cosgrove, Daniel J.	Recent Proliferation and Translocation of Pollen Group 1 Allergen Genes in the Maize Genome.	Plant Physiol.	143(3)	1269-1281	2007		
31175	17259286	Ma, Jian Feng	Spatial Distribution and Temporal Variation of the Rice Silicon Transporter Lsi1.	Plant Physiol.	143(3)	1306-1313	2007	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31176	17220367	Yamamoto Y, Kamiya N, Morinaka Y, Matsuoka M, Sazuka T.	Auxin Biosynthesis by the YUCCA Genes in Rice.	Plant Physiol.	143(3)	1362-1371	2007	YUCCA3,YUCCA6,YUCCA4,YUCCA7,YUCCA5,YUCCA2,YUCCA1	OsYUCCA3, OsYUC3,OsYUCCA6, OsYUC6,OsYUCCA4, OsYUC4, YUC4,OsYUCCA7, OsYUC7,OsYUCCA5, OsYUC5, YUC5,OsYUCCA2, OsYUC2,OsYUCCA1, OsYUC1
31177	17293439	Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP.	F-Box Proteins in Rice. Genome-Wide Analysis, Classification, Temporal and Spatial Gene Expression during Panicle and Seed Development, and Regulation by Light and Abiotic Stress.	Plant Physiol.	143(4)	1467-1483	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LC4,_,_,_,_,_,_,_,_,_,_,_,_,_,ZTL1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,ZTL2,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,APO1,D3,_,FKF1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,EP3,_	OsFbox412, Fbox412, Os_F0356,OsFbox592, Os_F0128, Fbox-4,OsFbox291, Os_F0516,OsTLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,OsFbox581, Os_F0649,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,OsFbox007, OsFbox7, Os_F0351,OsKMD1, OsFbox074, OsFbox74, Os_F0323,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,OsWD40-110, OsFbox233, Os_F0069,OsFbox182, Os_F0223, F-box118,OsFbox003, OsFbox3, Os_F0209, OsFBX3,OsFbox625, Os_F0458,OsFbox005, OsFbox5, Os_F0747, OsFBX4,Os_F0794, OsFBDUF48, FBDUF48, PEG3,OsFbox004, OsFbox4, Os_F0387,OsFbox053, OsFbox53, Os_F0309, OsLC4,OsFbox012, OsFbox12, Os_F0539, OsFBX8,OsFbox341, Fbox341, Os_F0215,IBF1, OsFBX310, FBX310,OsFbox183, Fbox183, Os_F0203, F-box119,OsFbox008, OsFbox8, Os_F0329,OsFbox557, Fbox557, Os_F0256,OsFbox009, OsFbox9, Os_F0616,OsFbox017, OsFbox17, Os_F0392,OsFbox018, OsFbox18, Os_F0259,OsFbox020, OsFbox20, Os_F0674,OsFbox021, OsFbox21, Os_F0117,OsFbox022, OsFbox22, Os_F0366,OsFbox024, OsFbox24, Os_F0087,OsZTL1, OsFbox066, OsFbox66, Os_F0484,OsRALyase, OsFbox090, OsFbox90, Os_F0337,OsKMD3, OsFbox096, OsFbox96, Os_F0169,MAIF1, OsFbox104, Os_F0528,OsFBK12, OsFbox130, Os_F0642,OsTLP14, OsTLP6, OsFbox139, Os_F0681,JMJ711, OsFbox149, Os_F0347,OsDRF1, OsFbox209, Os_F0001,OsTLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,OsFbox304, Os_F0494,OsKMD2, OsFbox314, Os_F0507,OsFbox594, Os_F0295, Fbox-1,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,OsFbx352, OsFbox516, Os_F0046,OsWD40-184, OsFbox571, Os_F0380,OsFbox002, OsFbox2,OsFbox591, Os_F0435, Fbox-5,OsKMD4, OsFbox596, Os_F0436,OsFBX234, OsFbox369, Os_F0191,OsFbox013, OsFbox13, Os_F0590, OsFBX10,OsFbox015, OsFbox15, Os_F0481, OsFBX12,OsFbox016, OsFbox16, Os_F0471, OsFBX13,OsTLP11, OsTLP10, OsFbox278, Os_F0631,OsFbox026, OsFbox26, Os_F0242,OsTLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,OsFbox027, OsFbox27, Os_F0595,OsFbox028, OsFbox28, Os_F0158,OsFbox032, OsFbox32, Os_F0271,OsFbox040, OsFbox40, Os_F0476,OsFbox031, OsFbox31, Os_F0326,OsFbox030, OsFbox30, Os_F0577,OsFbox035, OsFbox35, Os_F0556,OsFbox036, OsFbox36, Os_F0051,OsFbox037, OsFbox37, Os_F0332,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,OsFbox044, OsFbox44, Os_F0491,OsFbox045, OsFbox45, Os_F0307,OsFbox046, OsFbox46, Os_F0609,OsFbox047, OsFbox47, Os_F0754,OsFbox048, OsFbox48, Os_F0202,OsFbox049, OsFbox49, Os_F0364,OsFbox051, OsFbox51, Os_F0330,OsFbox052, OsFbox52, Os_F0755,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,OsFbox056, OsFbox56, Os_F0469,OsFbox057, OsFbox57, Os_F0570,OsFbox058, OsFbox58, Os_F0591,OsFbox059, OsFbox59, Os_F0692,OsFbox060, OsFbox60, Os_F0125,OsFbox061, OsFbox61, Os_F0473,OsFbox062, OsFbox62, Os_F0282,OsFbox063, OsFbox63, Os_F0090,OsFbox064, OsFbox64, Os_F0285,OsFbox065, OsFbox65, Os_F0311,OsFbox068, OsFbox68, Os_F0346,OsFbox069, OsFbox69, Os_F0227,OsFbox070, OsFbox70, Os_F0151,OsFbox071, OsFbox71, Os_F0306,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsFbox073, OsFbox73, Os_F0359,OsFbox075, OsFbox75, Os_F0514,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,OsFbox080, OsFbox80, Os_F0533,OsFbox081, OsFbox81, Os_F0375,OsFbox082, OsFbox82, Os_F0509,OsFbox083, OsFbox83, Os_F0360,OsFbox084, OsFbox84, Os_F0452,OsFbox086, OsFbox86, Os_F0482,OsFbox087, OsFbox87, Os_F0536,OsFbox088, OsFbox88, Os_F0475,OsFbox089, OsFbox89, Os_F0377,OsFbox091, OsFbox91, Os_F0517,OsFbox092, OsFbox92, Os_F0704,OsFbox093, OsFbox93, Os_F0270,OsFbox094, OsFbox94, Os_F0336,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,OsFbox023, OsFbox23, Os_F0211, OsSTA20,OsFbox095, OsFbox95, Os_F0274, OsSTA64,SaF, OsFbox019, OsFbox19, Os_F0070,OsFbox097, OsFbox97, Os_F0402,OsFbox098, OsFbox98, Os_F0174,OsFbox099, OsFbox99, Os_F0180,OsFbox101, Os_F0678,OsFbox102, Os_F0177,OsFbox103, Os_F0039,OsTLP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,OsFbox105, Os_F0549,OsFbox106, Os_F0496,OsFbox108, Os_F0236,OsFbox125, Os_F0403,OsFbox110, Os_F0551,OsFbox109, Os_F0628,OsFbox111, Os_F0005,OsFbox112, Os_F0657,OsFbox113, Os_F0234,OsFbox114, Os_F0103,OsFbox115, Os_F0639,OsFbox116, Os_F0291,OsFbox117, Os_F0679,OsFbox119, Os_F0693,OsFbox118, Os_F0460,OsFbox120, Os_F0441,OsFbox121, Os_F0352,OsFbox122, Os_F0288,OsFbox123, Os_F0289,OsFbox124, Os_F0262,OsFbox128, Os_F0506,OsFbox127, Os_F0532,OsFbox131, Os_F0292,OsFbox135, Os_F0341,OsFbox137, Os_F0544,OsFbox136, Os_F0187,OsFbox134, Os_F0443,OsFbox133, Os_F0449,OsFbox132, Os_F0228,OsFbox138, Os_F0340,OsFbox140, Os_F0065,OsFbox141, Os_F0122,OsFbox142, Os_F0023,OsFbox100,OsFbox067, OsFbox67, Os_F0477,OsFbox143, Os_F0129,OsFbox152, Os_F0251,OsFbox154, Os_F0130,OsFbox158, Os_F0008,OsFbox159, Os_F0006,OsFbox160, Os_F0017,OsFbox144, Os_F0237,OsFbox145, Os_F0026,OsFbox146, Os_F0179,OsFbox147, Os_F0266,OsFbox148, Os_F0426,OsFbox150, Os_F0123,OsFbox151, Os_F0222,OsFbox155, Os_F0503,OsFbox234, Os_F0170,OsFbox157, Os_F0188,OsFbox161, Os_F0076,OsFbox162, Os_F0012,OsFbox163, Os_F0009,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,OsFbox609, Os_F0370, OsFKF1,OsFbox164, Os_F0040,OsFbox167, Os_F0244,OsFbox168, Os_F0132,OsFbox169, Os_F0378,OsFbox170, Os_F0296,OsFbox171, Os_F0153,OsFbox172, Os_F0303,OsFbox173, Os_F0094,OsFbox174, Os_F0714,OsFbox175, Os_F0633,OsFbox176, Os_F0077,OsFbox177, Os_F0120,OsFbox179, Os_F0161,OsFbox180, Os_F0342,OsFbox181, Os_F0655,OsFbox184, Os_F0197,OsFbox185, Os_F0197,OsFbox186, Os_F0322,OsFbox187, Os_F0245,OsFbox188, Os_F0182,OsFbox189, Os_F0133,OsFbox190, Os_F0204,OsFbox191, Os_F0109,OsFbox192, Os_F0688,OsFbox193, Os_F0515,OsFbox237, Os_F0241,OsFbox196, Os_F0324,OsFbox195, Os_F0144,OsFbox197, Os_F0620,OsFbox198, Os_F0644,OsFbox199, Os_F0630,OsFbox200, Os_F0645,OsFbox201, Os_F0552,OsFbox203, Os_F0600,OsFbox204, Os_F0139,OsFbox205, Os_F0044,OsFbox207, Os_F0611,OsFbox208, Os_F0775,OsFbox211, Os_F0331,OsFbox212, Os_F0238,OsFbox213, Os_F0422,OsFbox214, Os_F0430,OsFbox215, Os_F0110,OsFbox216, Os_F0328,OsFbox218, Os_F0597,OsFbox219, Os_F0485,OsFbox220, Os_F0518,OsFbox221, Os_F0036,OsFbox222, Os_F0047,OsFbox224, Os_F0093,OsFbox223, Os_F0055,OsFbox225, Os_F0540,OsFbox226, Os_F0022,OsFbox227, Os_F0286,OsFbox228, Os_F0553,OsFbox229, Os_F0493,OsFbox230, Os_F0308,OsFbox231, Os_F0565,OsFbox232, Os_F0576,OsFbox235, Os_F0248,OsFbox238, Os_F0385,OsFbox242, Os_F0706,OsFbox241, Os_F0593,OsFbox244, Os_F0497,OsFbox245, Os_F0037,OsFbox246, Os_F0004,OsFbox247, Os_F0660,OsTLP3, OsTLP7, OsFbox240, Os_F0401,OsFbox249, Os_F0030,OsFbox250, Os_F0011,OsFbox251, Os_F0085,OsFbox252, Os_F0066,OsFbox253, Os_F0052,OsFbox254, Os_F0290,OsFbox255, Os_F0067,OsFbox256, Os_F0111,OsFbox257, Os_F0400,OsFbox258, Os_F0658,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,OsFbox261, Os_F0604,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,OsFbox266, Os_F0434,OsFbox268, Os_F0080,OsFbox269, Os_F0444,OsFbox270, Os_F0454,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,OsFbox275, Os_F0483,OsFbox276, Os_F0412,OsTIR1, TIR1, OsFbox248, Os_F0717,OsFbox277, Os_F0150,OsFbox279, Os_F0100,OsFbox280, Os_F0260,OsFbox283, Os_F0368,OsFbox284, Os_F0301,OsFbox285, Os_F0166,OsFbox286, Os_F0619,OsFbox287, Os_F0750,OsFbox288, Os_F0622,OsFbox289, Os_F0510,OsFbox290, Os_F0343,OsFbox292, Os_F0618,OsFbox293, Os_F0585,OsFbox294, Os_F0333,OsFbox295, Os_F0299,OsFbox296, Os_F0612,OsFbox297, Os_F0442,OsFbox298, Os_F0486,OsFbox299, Os_F0015,OsFbox300, Os_F0003,OsFbox301, Os_F0013,OsFbox302, Os_F0143,OsFbox303, Os_F0405,OsFbox305, Os_F0041,OsFbox306, Os_F0305,OsFbox307, Os_F0034,OsFbox308, Os_F0081,OsFbox309, Os_F0312,OsFbox310, Os_F0057,OsFbox311, Os_F0115,OsFbox313, Os_F0104,OsFbox354, Os_F0275,OsFbox315, Os_F0369,OsFbox317, Os_F0038,OsFbox318, Os_F0416,OsFbox319, Os_F0429,OsFbox320, Os_F0613,OsFbox322, Os_F0520,OsFbox323, Os_F0105,OsFbox324, Os_F0220,OsFbox326, Os_F0327,OsFbox327, Os_F0126,OsFbox328, Os_F0254,OsFbox329, Os_F0529,OsFbox330, Os_F0521,OsFbox331, Os_F0273,OsFbox332, Os_F0267,OsFbox333, Os_F0159,OsFbox334, Os_F0361,OsFbox335, Os_F0487,OsFbox336, Os_F0293,OsFbox337, Os_F0302,OsFbox338, Os_F0537,OsFbox339, Os_F0636,OsFbox340, Os_F0124,OsFbox343, Os_F0141,OsFbox342, Os_F0418,OsFbox344, Os_F0183,OsFbox345, Os_F0495,OsFbox346, Os_F0078,OsFbox347, Os_F0072,OsFbox348, Os_F0035,OsFbox349, Os_F0252,OsFbox350, Os_F0212,OsFbox351, Os_F0298,OsFbox352, Os_F0525,OsFbox353, Os_F0501,OsFbox355, Os_F0349,OsFbox356, Os_F0118,OsFbox357, Os_F0033,OsFbox358, Os_F0098,OsFbox359, Os_F0431,OsFbox360, Os_F0235,OsFbox361, Os_F0171,OsFbox362, Os_F0439,OsFbox363, Os_F0353,OsFbox364, Os_F0107,OsFbox365, Os_F0205,OsFbox366, Os_F0784,OsFbox367, Os_F0432,OsFbox368, Os_F0425,OsFbox370, Os_F0625,OsFbox371, Os_F0357,OsFbox372, Os_F0371,OsFbox377, Os_F0465,OsFbox378, Os_F0217,OsFbox379, Os_F0261,OsFbox373, Os_F0163,OsFbox375, Os_F0062,OsFbox376, Os_F0063,OsFbox380, Os_F0423,OsFbox384, Os_F0579,OsFbox381, Os_F0656,OsFbox382, Os_F0731,OsFbox383, Os_F0702,OsFbox385, Os_F0148,OsFbox386, Os_F0523,OsFbox387, Os_F0534,OsFbox388, Os_F0605,OsFbox374, Os_F0598,OsFbox389, Os_F0673,OsFbox391, Os_F0082,OsFbox392, Os_F0313,OsFbox393, Os_F0462,OsFbox394, Os_F0722,OsFbox395, Os_F0032,OsFbox397, Os_F0108,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,OsTLP7, OsTLP11, OsFbox398, Os_F0421,OsFbox399, Os_F0281,OsFbox400, Os_F0541,OsFbox408, Os_F0490,OsFbox401, Os_F0042,OsFbox403, Os_F0338,OsFbox404, Os_F0566,OsFbox405, Os_F0623,OsFbox406, Os_F0075,OsFbox407, Os_F0406,OsFbox409, Os_F0265,OsFbox410, Os_F0192,OsFbox411, Os_F0280,OsFbox413, Os_F0321,OsFbox414, Os_F0654,OsFbox415, Os_F0498,OsFbox416, Os_F0464,OsFbox417, Os_F0682,OsFbox418, Os_F0453,OsFbox420, Os_F0206,OsFbox421, Os_F0249,OsFbox423, Os_F0386,OsFbox422, Os_F0246,OsFbox424, Os_F0348,OsFbox425, Os_F0168,OsFbox426, Os_F0184,OsFbox427, Os_F0221,OsFbox428, Os_F0440,OsFbox429, Os_F0367,OsFbox430, Os_F0456,OsFbox431, Os_F0614,OsFbox432, Os_F0694,OsFbox433, Os_F0239,OsFbox435, Os_F0317,OsFbox436, Os_F0146,OsFbox437, Os_F0277,OsFbox438, Os_F0427,OsFbox439, Os_F0320,OsFbox440, Os_F0542,OsFbox441, Os_F0010,OsFbox444, Os_F0648,OsFbox447, Os_F0225,OsFbox446, Os_F0095,OsFbox448, Os_F0428,OsFbox449, Os_F0345,OsFbox450, Os_F0185,OsFbox452, Os_F0193,OsFbox451, Os_F0189,OsFbox453, Os_F0339,OsFbox454, Os_F0207,OsFbox455, Os_F0173,OsFbox457, Os_F0575,OsFbox458, Os_F0530,OsFbox459, Os_F0074,OsFbox460, Os_F0200,OsFbox461, Os_F0025,OsFbox462, Os_F0019,OsFbox463, Os_F0230,OsFbox464, Os_F0048,OsFbox465, Os_F0016,OsFbox466, Os_F0587,OsFbox467, Os_F0397,OsFbox468, Os_F0398,OsFbox469, Os_F0272,OsFbox470, Os_F0504,OsFbox471, Os_F0538,OsFbox472, Os_F0599,OsFbox473, Os_F0455,OsFbox474, Os_F0632,OsFbox475, Os_F0634,OsFbox476, Os_F0457,OsFbox477, Os_F0147,OsFbox478, Os_F0354,OsFbox479, Os_F0399,OsFbox480, Os_F0388,OsFbox482, Os_F0167,OsFbox483, Os_F0233,OsFbox484, Os_F0373,OsFbox491, Os_F0580,OsFbox485, Os_F0149,OsFbox486, Os_F0355,OsFbox487, Os_F0548,OsFbox494, Os_F0637,OsFbox495, Os_F0522,OsFbox488, Os_F0562,OsFbox489, Os_F0053,OsFbox490, Os_F0091,OsFbox492, Os_F0175,OsFbox493, Os_F0049,OsFbox496, Os_F0287,OsFbox497, Os_F0433,OsFbox498, Os_F0145,OsFbox499, Os_F0020,OsFbox500, Os_F0186,OsFbox501, Os_F0050,OsFbox502, Os_F0060,OsFbox503, Os_F0101,OsFbox504, Os_F0474,OsFbox505, Os_F0638,OsFbox507, Os_F0071,OsFbox508, Os_F0127,OsFbox510, Os_F0210,OsFbox511, Os_F0112,OsFbox512, Os_F0102,OsFbox513, Os_F0131,OsFbox514, Os_F0140,OsFbox515, Os_F0086,OsFbox517, Os_F0054,OsFbox518, Os_F0218,OsFbox520, Os_F0588,OsFbox521, Os_F0526,OsFbox522, Os_F0408,OsFbox523, Os_F0629,OsFbox524, Os_F0561,OsFbox525, Os_F0176,OsFbox526, Os_F0056,OsFbox527, Os_F0059,OsFbox528, Os_F0224,OsFbox534, Os_F0527,OsFbox531, Os_F0024,OsFbox532, Os_F0058,OsFbox533, Os_F0350,OsFbox535, Os_F0208,OsFbox536, Os_F0201,OsFbox537, Os_F0165,OsFbox538, Os_F0470,OsFbox539, Os_F0316,OsFbox481, Os_F0362, FBX322 ,OsFbox540, Os_F0468,OsFbox541, Os_F0409,OsFbox543, Os_F0162,OsFbox544, Os_F0652,OsFbox545, Os_F0535,OsFbox546, Os_F0513,OsFbox547, Os_F0119,OsFbox548, Os_F0160,OsFbox549, Os_F0255,OsFbox550, Os_F0263,OsFbox551, Os_F0073,OsFbox552, Os_F0216,OsFbox554, Os_F0677,OsFbox555, Os_F0152,OsFbox556, Os_F0154,OsFbox558, Os_F0376,OsFbox559, Os_F0572,OsFbox560, Os_F0582,OsFbox561, Os_F0014,OsFbox564, Os_F0113,OsFbox562, Os_F0002,OsFbox565, Os_F0027,OsFbox566, Os_F0279,OsFbox568, Os_F0335,OsTLP6, OsTLP13, OsFbox569, Os_F0461,OsFbox570, Os_F0219,OsFbox572, Os_F0135,OsFbox577, Os_F0135,OsFbox578, Os_F0136,OsFbox579, Os_F0334,OsFbox580, Os_F0096,OsFbox582, Os_F0511,OsFbox583, Os_F0363,OsFbox584, Os_F0231,OsFbox585, Os_F0294,OsFbox587, Os_F0097,OsFbox595, Os_F0194,OsFbox597, Os_F0447,OsFbox519,OsFbox600, Os_F0472,OsFbox602, Os_F0512,OsFbox604, Os_F0232,OsFbox588, Os_F0365, Fbox-10,OsFbox603, Os_F0489,OsFbox605, Os_F0437,OsFbox606, Os_F0155,OsFbox607, Os_F0045,OsFbox608, Os_F0043,OsFbox616, Os_F0314,OsFbox617, Os_F0505,OsFbox621, Os_F0621,OsFbox622, Os_F0499,OsFbox623, Os_F0502,OsFbox630, Os_F0318,OsFbox641, Os_F0319,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,OsFbox573,OsFbox574,OsFbox575,OsFbox576,OsFbox626,JMJ710, OsFbox611, Os_F0574,OsFbox610, Os_F0557,OsFbox612, Os_F0268,OsFbox613, Os_F0243,OsFbox614, Os_F0381,OsFbox615, Os_F0099,OsFbox618, Os_F0583,OsFbox620, Os_F0358,OsFbox624, Os_F0226,OsFbox627, Os_F0089,OsFbox628, Os_F0028,OsFbox629, Os_F0564,OsFbox631, Os_F0064,OsFbox632, Os_F0391,OsFbox633, Os_F0413,OsFbox634, Os_F0372,OsFbox635, Os_F0310,OsTLP4, OsTLP14, OsFbox645, Os_F0315,OsFbox648, Os_F0414,OsFbox638, Os_F0021,OsFbox639, Os_F0382,OsFbox640, Os_F0395,OsFbox642, Os_F0213,OsFbox643,OsFbox644, Os_F0725,OsFbox646, Os_F0134,OsFbox647, Os_F0466,OsFbox649, Os_F0410,OsFbox650, Os_F0568,OsFbox651, Os_F0018,OsFbox652, Os_F0284,OsFbox553, Os_F0250,OsFbox654, Os_F0092,OsFbox655, Os_F0116,OsFbox657, Os_F0500,OsFbox658, Os_F0589,OsFbox659, Os_F0424,OsFbox660, Os_F0569,OsFbox661, Os_F0665,OsFbox662, Os_F0567,OsFbox663, Os_F0276,OsFbox664, Os_F0592,OsFbox665, Os_F0555,OsFbox666, Os_F0411,OsFbox667, Os_F0594,OsFbox668, Os_F0389,OsFbox669, Os_F0383,OsFbox670, Os_F0419,OsFbox671, Os_F0524,OsFbox673, Os_F0735,OsFbox674, Os_F0164,OsFbox676, Os_F0269,OsFbox677, Os_F0195,OsFbox678, Os_F0417,Os_F0653,Os_F0699,Os_F0798,Os_F0607,Os_F0756,Os_F0796,Os_F0659,Os_F0687,,Os_F0344,,Os_F0669,Os_F0733,,Os_F0671,Os_F0451,Os_F0695,,Os_F0720,Os_F0138,OsFbox656,Os_F0780, OsFBX9,Os_F0785, OsEnS-103,,OsFbox653, Os_F0172,OsFbox506, Os_F0596,OsFbox593, Os_F0278, Fbox-3,OsFbox590, Os_F0068, Fbox-6,OsFbox589, Os_F0137, Fbox-8,OsFbox586, Os_F0088, Fbox-13,Os_F0247,OsFbox675, Os_F0744,OsFbox129, Os_F0178,OsFbox210,Os_F0732,OsFbox001, OsFbox1, Os_F0615, OsFBX1,Os_F0739, OsFBX2,OsFbox010, OsFbox10, Os_F0156, OsFBX6,OsFbox011, OsFbox11, Os_F0196, OsFBX7,OsFbox014, OsFbox14, Os_F0467, OsFBX11,OsFbox178, Os_F0705,OsFbox025, OsFbox25, Os_F0325,Os_F0698,OsFbox529, Os_F0667, OsEnS-132,OsFbox509, Os_F0258, OsADF, ADF,OsFbox396, Os_F0578, OsMsr9,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,OsFbox456, Fbox456, Os_F0543,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,OsFbox542, Os_F0480, OsSTA237,OsFbox619, Os_F0190, OsSTA265,OsFbox443, Os_F0084, OsSTA212,OsFbox672, Os_F0707,OsFbox165, Os_F0229,OsFbox166, Os_F0438,OsFbox217, Os_F0121, MOF, OsMOF,EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646
31178	17293435	Chong, Kang	Overexpression of an R1R2R3 MYB Gene, OsMYB3R-2, Increases Tolerance to Freezing, Drought, and Salt Stress in Transgenic Arabidopsis.	Plant Physiol.	143(4)	1739-1751	2007	_,_	OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,OsMYB3R-1, OsMYB3R1, MYB3R1
31179	17322341	Reid, James B.	Characterization of Two Brassinosteroid C-6 Oxidase Genes in Pea.	Plant Physiol.	143(4)	1894-1904	2007		
31180	17337526	Liu, Yongsheng	An Unusual Posttranscriptional Processing in Two Betaine Aldehyde Dehydrogenase Loci of Cereal Crops Directed by Short, Direct Repeats in Response to Stress Conditions.	Plant Physiol.	143(4)	1929-1942	2007		
31181	17351055	Shewry, Peter R.	A Novel Bioinformatics Approach Identifies Candidate Genes for the Synthesis and Feruloylation of Arabinoxylan.	Plant Physiol.	144(1)	43-53	2007		
31182	17369434	Perata, Pierdomenico	Transcript Profiling of the Anoxic Rice Coleoptile.	Plant Physiol.	144(1)	218-231	2007	EXPA7,EXPB12,WX1	OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXPB12, OsaEXPb1.17,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
31183	17384160	Yamaguchi, Takeshi	Comprehensive Expression Profiling of Rice Grain Filling-Related Genes under High Temperature Using DNA Microarray.	Plant Physiol.	144(1)	258-277	2007	SBE4	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
31184	17351053	Zhou, Dao-Xiu	A WUSCHEL-LIKE HOMEOBOX Gene Represses a YABBY Gene Expression Required for Rice Leaf Development.	Plant Physiol.	144(1)	380-390	2007	YAB5,WOX4,SH1,YAB6,WOX10,WOX5,QHB,WOX8,NAL3,YAB1,WOX6,GL1,DWT1,YAB4,YAB3,NAL2,WOX1,WOX11	OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1,OsWOX4, Os WOX4,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,OsYAB6, OsYAB5,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsYAB1, FIL1, osFIL1,OsWOX6, Os WOX6, OsWOX12B,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,OsWOX7, Os WOX7, WOX7, OsWOX9A,OsYAB4, OsYAB7, TOB2, ,OsYAB3, OsYAB4, TOB3,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1,OsWOX11, Os WOX11, OsWOX12A
31185	17351054	Wang, Guo-Liang	Magnaporthe grisea Infection Triggers RNA Variation and Antisense Transcript Expression in Rice.	Plant Physiol.	144(1)	524-533	2007		
31186	18281415	Wobus, Ulrich	Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory Network Commonalities and Differences Highlighted by New MapMan/PageMan Profiling Tools.	Plant Physiol.	146(4)	1738-1758	2008		
31187	18245456	He, Guangcun	Herbivore-Induced Callose Deposition on the Sieve Plates of Rice: An Important Mechanism for Host Resistance.	Plant Physiol.	146(4)	1810-1820	2008	BPH15,BPH14,AMY3D	Bph15 (Qbp2), Bph15, Qbp2, qBPH-4,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
31188	18088314	Roulin A, Piegu B, Wing RA, Panaud O.	Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.	Plant J.	53(6)	950-9	2008	RIRE1	RIRE1, Osr11, Rire1
31189	12481052	Jiang N, Jordan IK, Wessler SR.	Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome.	Plant Physiol.	130(4)	1697-705	2002	RIRE2,DASHENG	RIRE2, Osr26, Rire2, Retrosat2,Dasheng
31191	12897975	Wang R, Hong GF, Han B.	Characterization of the copy number of RIRE10 retrotransposon and transcriptional activity of its LTR in rice genome	Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai).	35(8)	768-73	2003	RIRE10	RIRE10
31192	15695435	Asano T, Tanaka N, Yang G, Hayashi N, Komatsu S.	Genome-wide identification of the rice calcium-dependent protein kinase and its closely related kinase gene families: comprehensive analysis of the CDPKs gene family in rice.	Plant Cell Physiol.	46(2)	356-66	2005	CDPK21,CDPK18,CDPK24,CDPK8,CRK2,CRK3,CRK4,CRK5,_,_,CDPK27,CDPK14,CDPK11,CRK1,CDPK7,CDPK5,CDPK10,CDPK13,CDPK12,CDPK2,SPK,CDPK9,DMI3,CDPK22,CDPK25,CDPK28,CDPK3,CDPK19,CDPK31,CDPK6,CDPK1,CDPK15,CDPK26,CDPK29,CDPK16,CDPK20,CDPK30,CDPK17,CDPK4	OsCDPK21, OsCPK21,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,OsCDPK24, OsCPK24, OsCDPK14,OsCDPK8, OsCPK8,OsCRK2,OsCRK3,OsCRK4,OsCRK5,OsPEPRK1,OsPEPRK2,OsCDPK27, OsCPK27,OsCDPK14, OsCPK14,OsCDPK11, OsCPK11,OsCRK1, OsCBK, CBK,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK5, OsCPK5,OsCDPK10, OsCPK10, CPK10,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,OsCDPK12, OsCPK12, CPK12,OsCDPK2, OsCPK2,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23,OsCDPK9, OsCPK9, CPK9,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsCDPK22, OsCPK22,OsCDPK25, OsCPK25,OsCDPK28, OsCPK28,OsCDPK3, OsCPK3,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,OsCDPK31, OsCPK31,OsCDPK6, OsCPK6,OsCDPK1, OsCPK1,OsCDPK15, OsCPK15,OsCDPK26, OsCPK26,OsCDPK29, OsCPK29,OsCDPK16, OsCPK16,OsCDPK20, OsCPK20,OsCDPK30, OsCPK30,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsCDPK4, OsCPK4, CPK4, CDPK1
31193	12096107	Bughio,N., Yamaguchi,H., Nishizawa,N.K., Nakanishi,H. and Mori,S.	Cloning an iron-regulated metal transporter from rice	J. Exp. Bot.	53(374)	1677-1682	2002	IRT1	OsIRT1
31194	18678896	Chen,J., Ding,J., Ouyang,Y., Du,H., Yang,J., Cheng,K., Zhao,J., Qiu,S., Zhang,X., Yao,J., Liu,K., Wang,L., Xu,C., Li,X., Xue,Y., Xia,M., Ji,Q., Lu,J., Xu,M. and Zhang,Q.	A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice	Proc. Natl. Acad. Sci. U.S.A.	105(32)	11436-11441	2008	S5	S5-3, S5-4
31195	18599581	Chen,S., Yang,Y., Shi,W., Ji,Q., He,F., Zhang,Z., Cheng,Z., Liu,X. and Xu,M.	Badh2, encoding betaine aldehyde dehydrogenase, inhibits the biosynthesis of 2-acetyl-1-pyrroline, a major component in rice fragrance	Plant Cell	20(7)	1850-1861	2008	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
31197	18586507	Garrocho-Villegas,V., Bustos-Rivera,G., Gough,J., Vinogradov,S.N. and Arredondo-Peter,R.	Expression and in silico structural analysis of a rice (Oryza sativa) hemoglobin 5	Plant Physiol. Biochem.	46(10)	855-859	2008	Hb5	OsHB5, HB5, OsPgb1.5, Pgb1.5
31198	18831738	Guo,X., Gui,Y., Wang,Y., Zhu,Q.H., Helliwell,C. and Fan,L.	Selection and mutation on microRNA target sequences during rice evolution	BMC Genomics.	9(1)	454	2008	miR535,MIR820A,MIR390,MIR408,MIR397A	OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a
31199	18755256	Huang,J., Wang,M.M., Bao,Y.M., Sun,S.J., Pan,L.J. and Zhang,H.S.	SRWD: A novel WD40 protein subfamily regulated by salt stress in rice (Oryza sativa L.)	Gene	424(1-2)	71-79	2008	SRWD5,SRWD1,SRWD4,SRWD3,SRWD2	SRWD5, OsWD40-73,SRWD1, OsWD40-162,SRWD4, OsWD40-160,SRWD3, OsWD40-126,SRWD2, OsWD40-52
31200	18566795	Kim,S.I., Andaya,C.B., Goyal,S.S. and Tai,T.H.	The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism	Theor. Appl. Genet.	117(5)	769-779	2008	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
31201	18723891	Koide,Y., Ikenaga,M., Sawamura,N., Nishimoto,D., Matsubara,K., Onishi,K., Kanazawa,A. and Sano,Y.	The evolution of sex-independent transmission ratio distortion involving multiple allelic interactions at a single locus in rice	Genetics	180(1)	409-420	2008	S6	
31202	18619847	Kumar,K., Rao,K.P., Sharma,P. and Sinha,A.K.	Differential regulation of rice mitogen activated protein kinase kinase (MKK) by abiotic stress	Plant Physiol. Biochem.	46(10)	891-897	2008	MKK10-2,MKK5,MKK6,MKK1,MKK3,MKK10-1,MKK10-3,SMG1	OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMPKK10-2D, MPKK10-2D, MPKK10.2,OsMKK5, BUD1, OsBUD1,OsMKK6, OsMEK1,OsMKK1, OsMEK2,OsMKK3,OsMKK10-1, MPKK10.1 ,MPKK10.3,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1
31203	18820696	Lin,H.-X., Jin,J., Huang,W., Gao,J.-P., Yang,J., Shi,M., Zhu,M.-Z. and Luo,D.	Genetic control of rice plant architecture domestication	Nat Genet	40(11)	1365-69	2008	PROG1	OsPROG1
31204	14645394	Li,Y., Ohtsu,K., Nemoto,K., Tsutsumi,N., Hirai,A. and Nakazono,M.	The rice pyruvate decarboxylase 3 gene, which lacks introns, is transcribed in mature pollen	J. Exp. Bot.	55(394)	145-146	2004	PDC3	pdc3*, pdc3, OsPDC3, OsSTA202
31205	18718933	Moon,S., Giglione,C., Lee,D.Y., An,S., Jeong,D.H., Meinnel,T. and An,G.	Rice peptide deformylase PDF1B is crucial for development of chloroplasts	Plant Cell Physiol.	49(10)	1536-1546	2008	_,_,_	OsPDF1B,OsPDF1A,OsPDF1B2, OsPDF1B2.p
31206	18421420	Niu,X., Chen,Q. and Wang,X.	OsITL1 gene encoding an inositol 1,3,4-trisphosphate 5/6-kinase is a negative regulator of osmotic stress signaling	Biotechnol. Lett.	30(9)	1687-1692	2008	DSM3,ITPK5,ITPK1	OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1,OsITPK5, OsITP5/6K-5, OsITL3,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2
31207	18695945	Rajanikant,C., Melzer,M., Rao,B.J. and Sainis,J.K.	Homologous recombination properties of OsRad51, a recombinase from rice	Plant Mol. Biol.	68(4-5)	479-491	2008	RAD51A1,RAD51A2	OsRAD51A1,OsRad51A2, OsRAD51
31208	18621947	Satoh,H., Shibahara,K., Tokunaga,T., Nishi,A., Tasaki,M., Hwang,S.K., Okita,T.W., Kaneko,N., Fujita,N., Yoshida,M., Hosaka,Y., Sato,A., Utsumi,Y., Ohdan,T. and Nakamura,Y.	Mutation of the Plastidial {alpha}-Glucan Phosphorylase Gene in Rice Affects the Synthesis and Structure of Starch in the Endosperm	Plant Cell	20(7)	1833-1849	2008	ALK,_,_,SBE3,FLO5,SSI,SBE1,SBE4	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,Pho2, OsPho2,Pho1, OsPho1, OsPHOL, PHOL,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
31209	18643954	Sengupta,S., Patra,B., Ray,S. and Majumder,A.L.	Inositol methyl tranferase from a halophytic wild rice, Porteresia coarctata Roxb. (Tateoka): regulation of pinitol synthesis under abiotic stress	Plant Cell Environ.	31(10)	1442-1459	2008	INO1,_	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,PcIMT1
31210	18820699	Tan,L., Li,X., Liu,F., Sun,X., Li,C., Zhu,Z., Fu,Y., Cai,H., Wang,X., Xie,D. and Sun,C.	Control of a key transition from prostrate to erect growth in rice domestication	Nat Genet	40(11)	1360-1364	2008	PROG1	OsPROG1
31211	15020633	Watanabe,H., Saigusa,M., Hase,S., Hayakawa,T. and Satoh,S.	Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments	J. Exp. Bot.	55(399)	1145-1148	2004	ETR2	etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3
31212	18326788	Welsch,R., Wust,F., Bar,C., Al-Babili,S. and Beyer,P.	A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes	Plant Physiol.	147(1)	367-380	2008	NCED2,ABA1,NCED1,NCED3,PSY1,_,PSY2	OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,PSY1, OsPSY1 ,OsPSY, PSY, OsPSY3, PSY3,PSY2, OsPSY2
31213	18725639	Wu,C., You,C., Li,C., Long,T., Chen,G., Byrne,M.E. and Zhang,Q.	RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice	Proc. Natl. Acad. Sci. U.S.A.	105(35)	12915-12920	2008	EHD2/RID1	Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2
31214	18679055	Zhang,W., Chen,J., Zhang,H. and Song,F.	Overexpression of a rice diacylglycerol kinase gene OsBIDK1 enhances disease resistance in transgenic tobacco	Mol. Cells	26(3)	258-264	2008	_	OsBIDK1, BIDK1
31215	18687877	Zhu,Q.H., Spriggs,A., Matthew,L., Fan,L., Kennedy,G., Gubler,F. and Helliwell,C.	A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains	Genome Res.	18(9)	1456-1465	2008	MIR1846D,MIR1847,MIR1848,MIR1846A,MIR1846B,MIR1846C,MIR1849,MIR1851,MIR1852,MIR1853,MIR1854,MIR1855,MIR1856,MIR1857,MIR1858A,MIR1858B,MIR1859,MIR1861A,MIR1861B,MIR1861F,MIR1861I,MIR1861L,MIR1861C,MIR1861D,MIR1861E,MIR1861K,MIR1861M,MIR1861G,MIR1861H,MIR1861J,MIR1861N,MIR1862A,MIR1862B,MIR1862C,MIR1862E,MIR1864,MIR1865,MIR1866,MIR1868,MIR1869,MIR1870,MIR1871,MIR1872,MIR1873,miR1874,MIR1875,MIR1876,MIR1877,MIR1878,MIR1880,MIR1881,MIR1882A,MIR1882B,MIR1882C,MIR1882D,MIR1882F,MIR1882G,MIR1882H,MIR1883A,MIR1883B,MIR531B,MIR806I_AS,MIR806J_AS,MIR812F,MIR812G,MIR812H,MIR812I,MIR812J,MIR1428B,MIR1428C,MIR1423,TAS3A1,TAS3B2,MIR1867,MIR1860,TAS3B1,MIR1428E,MIR1850,MIR1882E,MIR1862D,MIR529B,MIR1879,MIR1428D,MIR1863	miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p,miR1847, osa-miR1847, osa-MIR1847,miR1848, osa-miR1848, osa-MIR1848,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,miR1846c, osa-miR1846c, osa-MIR1846c,miR1849, osa-miR1849, osa-MIR1849,miR1851, osa-miR1851, osa-MIR1851,miR1852, osa-miR1852, osa-MIR1852,miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p,miR1854, osa-miR1854, osa-MIR1854,miR1855, osa-miR1855, osa-MIR1855,miR1856, osa-miR1856, osa-MIR1856,miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p,miR1858a, osa-miR1858a, osa-MIR1858a,miR1858b, osa-miR1858b, osa-MIR1858b,miR1859, osa-miR1859, osa-MIR1859 ,miR1861a, osa-miR1861a, osa-MIR1861a,miR1861b, osa-miR1861b, osa-MIR1861b,miR1861f, osa-miR1861f, osa-MIR1861f,miR1861i, osa-miR1861i, osa-MIR1861i,miR1861l, osa-miR1861l, osa-MIR1861l,miR1861c, osa-miR1861c, osa-MIR1861c,miR1861d, osa-miR1861d, osa-MIR1861d,miR1861e, osa-miR1861e, osa-MIR1861e,miR1861k, osa-miR1861k, osa-MIR1861k,miR1861m, osa-miR1861m, osa-MIR1861m,miR1861g, osa-miR1861g, osa-MIR1861g,miR1861h, osa-miR1861h, osa-MIR1861h,miR1861j, osa-miR1861j, osa-MIR1861j,miR1861n, osa-miR1861n, osa-MIR1861n,miR1862a, osa-miR1862a, osa-MIR1862a,miR1862b, osa-miR1862b, osa-MIR1862b,miR1862c, osa-miR1862c, osa-MIR1862c,miR1862e, osa-miR1862e, osa-MIR1862e,miR1864, osa-miR1864, osa-MIR1864,miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p,miR1866, osa-miR1866, osa-MIR1866,miR1868, osa-miR1868, osa-MIR1868,miR1869, osa-miR1869, osa-MIR1869,miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p,miR1871, osa-miR1871, osa-MIR1871,miR1872, osa-miR1872, osa-MIR1872,miR1873, osa-miR1873, osa-MIR1873,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,miR1875, osa-miR1875, osa-MIR1875,miR1876, osa-miR1876, osa-MIR1876,miR1877, osa-miR1877, osa-MIR1877,miR1878, osa-miR1878, osa-MIR1878,miR1880, osa-miR1880, osa-MIR1880,miR1881, osa-miR1881, osa-MIR1881,miR1882a, osa-miR1882a, osa-MIR1882a,miR1882b, osa-miR1882b, osa-MIR1882b,miR1882c, osa-miR1882c, osa-MIR1882c,miR1882d, osa-miR1882d, osa-MIR1882d,miR1882f, osa-miR1882f, osa-MIR1882f,miR1882g, osa-miR1882g, osa-MIR1882g,miR1882h, osa-miR1882h, osa-MIR1882h,miR1883a, osa-miR1883a, osa-MIR1883a,miR1883b, osa-miR1883b, osa-MIR1883b,miR531b, osa-MIR531b,miR806i_as, osa-MIR806i_as,miR806j_as, osa-MIR806j_as,miR812f, osa-miR812f, osa-MIR812f,miR812g, osa-miR812g, osa-MIR812g,miR812h, osa-miR812h, osa-MIR812h,miR812i, osa-miR812i, osa-MIR812i,miR812j, osa-miR812j, osa-MIR812j,miR1428b, osa-miR1428b, osa-MIR1428b,miR1428c, osa-miR1428c, osa-MIR1428c,miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p,TAS3a1,TAS3b2,miR1867, osa-miR1867, osa-MIR1867,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a,OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.3,miR1882e, osa-miR1882e, osa-MIR1882e,miR1862d, osa-miR1862d, osa-MIR1862d,miR529b, Osa-miR529b, OsmiR529b,miR1879, osa-miR1879, osa-MIR1879,miR1428d, osa-miR1428d, osa-MIR1428d,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a
31216	18757558	Azimzadeh,J., Nacry,P., Christodoulidou,A., Drevensek,S., Camilleri,C., Amiour,N., Parcy,F., Pastuglia,M. and Bouchez,D.	Arabidopsis TONNEAU1 Proteins Are Essential for Preprophase Band Formation and Interact with Centrin	Plant Cell	20(8)	2146-2159	2008		
31217		Masao Iwamoto, Hiromi Higo1 and Kenichi Higo	Differential diurnal expression of rice catalase genes: the 5-flanking region of CatA is not sufficient for circadian control	Plant Sci.	151	39-46	2000	CATC,CATA	OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
31218	8900187	Sheu JJ, Yu TS, Tong WF, Yu SM.	Carbohydrate starvation stimulates differential expression of rice alpha-amylase genes that is modulated through complicated transcriptional and posttranscriptional processes.	J. Biol. Chem.	271(43)	26998-7004	1996	AMY1C,AMY2A,AMY1B,AMY3A,AMY3B,AMY3C,AMY1A,AMY3E,AMY3D	Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A,Amy1B*(RAmy1B), AMYC, RAmy1B, Amy2, Amy1B, Osamy-c, OSamy-c, OSamy--c ,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
31219	11333304	Mizuno K, Kobayashi E, Tachibana M, Kawasaki T, Fujimura T, Funane K, Kobayashi M, Baba T.	Characterization of an isoform of rice starch branching enzyme, RBE4, in developing seeds.	Plant Cell Physiol.	42(4)	349-57	2001	SBE4	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
31300	18073142	Rice KL,Kees UR,Greene WK	Transcriptional regulation of FHL1 by TLX1/HOX11 is dosage, cell-type and promoter context-dependent.	Biochem. Biophys. Res. Commun.	367	707-13	2008		
31301	18245346	Zhao T,Gu T,Rice HC,McAdams KL,Roark KM,Lawson K,Gauthier SA,Reagan KL,Hewes RS	A Drosophila gain-of-function screen for candidate genes involved in steroid-dependent neuroendocrine cell remodeling.	Genetics	178	883-901	2008		
31302	18388201	Rice LM,Montabana EA,Agard DA	The lattice as allosteric effector: structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly.	Proc. Natl. Acad. Sci. U.S.A.	105	5378-83	2008		
31303	18392778	Dugas DV,Bartel B	Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases.	Plant Mol. Biol.	67	403-17	2008		
31304	18398005	Sidhu GK,Rustgi S,Shafqat MN,von Wettstein D,Gill KS	Fine structure mapping of a gene-rich region of wheat carrying Ph1, a suppressor  of crossing over between homoeologous chromosomes.	Proc. Natl. Acad. Sci. U.S.A.	105	5815-20	2008		
31305	18401574	Ochiai K,Uemura S,Shimizu A,Okumoto Y,Matoh T	Boron toxicity in rice (Oryza sativa L.). I. Quantitative trait locus (QTL) analysis of tolerance to boron toxicity.	Theor. Appl. Genet.	117	125-33	2008		
31306	18409027	Fujino K,Sekiguchi H	Site specific cytosine methylation in rice nonautonomous transposable element nDart.	Plant Mol. Biol.	67	511-8	2008	NDART1	nDart, nDART1, nDART
31307	18410482	Wang C,Washida H,Crofts AJ,Hamada S,Katsube-Tanaka T,Kim D,Choi SB,Modi M,Singh S,Okita TW	The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization.	Plant J.	55	443-54	2008		
31308	18420595	Uddin MI,Qi Y,Yamada S,Shibuya I,Deng XP,Kwak SS,Kaminaka H,Tanaka K	Overexpression of a new rice vacuolar antiporter regulating protein OsARP improves salt tolerance in tobacco.	Plant Cell Physiol.	49	880-90	2008	_	OsARP, OsCTP
31309	18430767	Hanashiro I,Itoh K,Kuratomi Y,Yamazaki M,Igarashi T,Matsugasako J,Takeda Y	Granule-bound starch synthase I is responsible for biosynthesis of extra-long unit chains of amylopectin in rice.	Plant Cell Physiol.	49	925-33	2008		
31310	18432238	Yang CG,Yi C,Duguid EM,Sullivan CT,Jian X,Rice PA,He C	Crystal structures of DNA/RNA repair enzymes AlkB and ABH2 bound to dsDNA.	Nature	452	961-5	2008		
31311	18433437	Li C,Dubcovsky J	Wheat FT protein regulates VRN1 transcription through interactions with FDL2.	Plant J.	55	543-54	2008		
31312	18438440	Zhang Y,Mao JX,Yang K,Li YF,Zhang J,Huang YX,Shen FC,Zhang CD	Characterization and mapping of a male-sterility mutant, tapetum desquamation (t), in rice.	Genome	51	368-74	2008		
31313	18438637	Srinivas G,Satish K,Murali Mohan S,Nagaraja Reddy R,Madhusudhana R,Balakrishna D,Venkatesh Bhat B,Howarth CJ,Seetharama N	Development of genic-microsatellite markers for sorghum staygreen QTL using a comparative genomic approach with rice.	Theor. Appl. Genet.	117	283-96	2008		
31314	18438730	Baek JM,Han P,Iandolino A,Cook DR	Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice.	Plant Mol. Biol.	67	499-510	2008		
31315	18451033	Garg RP,Qian XL,Alemany LB,Moran S,Parry RJ	Investigations of valanimycin biosynthesis: elucidation of the role of seryl-tRNA.	Proc. Natl. Acad. Sci. U.S.A.	105	6543-7	2008		
31316	18451263	Fouquaert E,Peumans WJ,Smith DF,Proost P,Savvides SN,Van Damme EJ	The "old" Euonymus europaeus agglutinin represents a novel family of ubiquitous plant proteins.	Plant Physiol.	147	1316-24	2008		
31317	18470484	Wang Q,Guan Y,Wu Y,Chen H,Chen F,Chu C	Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.	Plant Mol. Biol.	67	589-602	2008	DREB1F	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F
31318	18470504	Coram TE,Settles ML,Wang M,Chen X	Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus.	Theor. Appl. Genet.	117	401-11	2008		
31319	18477473	Byun MY,Hong JP,Kim WT	Identification and characterization of three telomere repeat-binding factors in rice.	Biochem. Biophys. Res. Commun.	372	85-90	2008	TRBF2,TRBF3,TRBF1	OsTRBF2,OsTRBF3,OsTRBF1
31320	18480059	Houston SI,McManus KJ,Adams MM,Sims JK,Carpenter PB,Hendzel MJ,Rice JC	Catalytic function of the PR-Set7 histone H4 lysine 20 monomethyltransferase is essential for mitotic entry and genomic stability.	J. Biol. Chem.	283	19478-88	2008		
31321	18481185	Laspina NV,Vega T,Seijo JG,Gonzalez AM,Martelotto LG,Stein J,Podio M,Ortiz JP,Echenique VC,Quarin CL,Pessino SC	Gene expression analysis at the onset of aposporous apomixis in Paspalum notatum.	Plant Mol. Biol.	67	615-28	2008		
31322	18491141	Nuruzzaman M,Gupta M,Zhang C,Wang L,Xie W,Xiong L,Zhang Q,Lian X	Sequence and expression analysis of the thioredoxin protein gene family in rice.	Mol. Genet. Genomics	280	139-51	2008		
31323	18492871	Wang JW,Schwab R,Czech B,Mica E,Weigel D	Dual effects of miR156-targeted SPL genes and CYP78A5/KLUH on plastochron length  and organ size in Arabidopsis thaliana.	Plant Cell	20	1231-43	2008		
31324	18493037	Chen CL,Chen CJ,Vallon O,Huang ZP,Zhou H,Qu LH	Genomewide analysis of box C/D and box H/ACA snoRNAs in Chlamydomonas reinhardtii reveals an extensive organization into intronic gene clusters.	Genetics	179	21-30	2008		
31325	18493049	Shen Y,Liu Y,Liu L,Liang C,Li QQ	Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii.	Genetics	179	167-76	2008		
31326	18495384	Guo AY,Zhu QH,Gu X,Ge S,Yang J,Luo J	Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family.	Gene	418	1-8	2008		
31327	18496756	Liu H,Zhang H,Yang Y,Li G,Yang Y,Wang X,Basnayake BM,Li D,Song F	Functional analysis reveals pleiotropic effects of rice RING-H2 finger protein gene OsBIRF1 on regulation of growth and defense responses against abiotic and biotic stresses.	Plant Mol. Biol.	68	17-30	2008	_	OsBIRF1
31328	18506581	Aleman L,Kitamura J,Abdel-mageed H,Lee J,Sun Y,Nakajima M,Ueguchi-Tanaka M,Matsuoka M,Allen RD	Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1.	Plant Mol. Biol.	68	1-16	2008	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
31329	18508761	Liu Y,Matthews KS,Bondos SE	Multiple intrinsically disordered sequences alter DNA binding by the homeodomain  of the Drosophila hox protein ultrabithorax.	J. Biol. Chem.	283	20874-87	2008		
31330	18508959	Conner JA,Goel S,Gunawan G,Cordonnier-Pratt MM,Johnson VE,Liang C,Wang H,Pratt LH,Mullet JE,Debarry J,Yang L,Bennetzen JL,Klein PE,Ozias-Akins P	Sequence analysis of bacterial artificial chromosome clones from the apospory-specific genomic region of Pennisetum and Cenchrus.	Plant Physiol.	147	1396-411	2008		
31331	18511458	Tokunaga T,Miyata Y,Fujikawa Y,Esaka M	RNAi-mediated knockdown of the XIP-type endoxylanase inhibitor gene, OsXIP, has no effect on grain development and germination in rice.	Plant Cell Physiol.	49	1122-7	2008	_	OsXIP, XIP
31332	18516584	Barret P,Brinkmann M,Beckert M	A major locus expressed in the male gametophyte with incomplete penetrance is responsible for in situ gynogenesis in maize.	Theor. Appl. Genet.	117	581-94	2008		
31333	18522800	Saito T,Abe D,Sekiya K	Sakuranetin induces adipogenesis of 3T3-L1 cells through enhanced expression of PPARgamma2.	Biochem. Biophys. Res. Commun.	372	835-9	2008		
31334	18522943	Brazier-Hicks M,Evans KM,Cunningham OD,Hodgson DR,Steel PG,Edwards R	Catabolism of glutathione conjugates in Arabidopsis thaliana. Role in metabolic reactivation of the herbicide safener fenclorim.	J. Biol. Chem.	283	21102-12	2008		
31335	18535011	Ishizaki K,Chiyoda S,Yamato KT,Kohchi T	Agrobacterium-mediated transformation of the haploid liverwort Marchantia polymorpha L., an emerging model for plant biology.	Plant Cell Physiol.	49	1084-91	2008		
31336	18539606	Banuelos MA,Haro R,Fraile-Escanciano A,Rodriguez-Navarro A	Effects of polylinker uATGs on the function of grass HKT1 transporters expressed  in yeast cells.	Plant Cell Physiol.	49	1128-32	2008		
31337	18547394	Pata MO,Wu BX,Bielawski J,Xiong TC,Hannun YA,Ng CK	Molecular cloning and characterization of OsCDase, a ceramidase enzyme from rice.	Plant J.	55	1000-9	2008		
31338	18553067	Lehmensiek A,Sutherland MW,McNamara RB	The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley.	Theor. Appl. Genet.	117	721-8	2008		
31339	18553105	Park DS,Song MY,Park SK,Lee SK,Lee JH,Song SY,Eun MY,Hahn TR,Sohn JK,Yi G,Nam MH,Jeon JS	Molecular tagging of the Bph1 locus for resistance to brown planthopper (Nilaparvata lugens Stal) through representational difference analysis.	Mol. Genet. Genomics	280	163-72	2008	_,_,BPH1,LOX11	OsBphi262,OsBphi237,Bph1,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2
31340	18564381	Chen H,Samadder PP,Tanaka Y,Ohira T,Okuizumi H,Yamaoka N,Miyao A,Hirochika H,Ohira T,Tsuchimoto S,Ohtsubo H,Nishiguchi M	OsRecQ1, a QDE-3 homologue in rice, is required for RNA silencing induced by particle bombardment for inverted repeat DNA, but not for double-stranded RNA.	Plant J.	56	274-86	2008	-	OsRecQ1
31341	18567825	Itoh J,Hibara K,Sato Y,Nagato Y	Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.	Plant Physiol.	147	1960-75	2008	HB4,HOX9, LF1,HOX29,HOX33	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3,Oshox9, OsHox9, OsHB2, HB2, OSHB2,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1 ,Oshox29, OsHox29, OSHB5,Oshox33, OsHox33, OSHB3, SIP22
31342	18571878	Liu H,Wang X,Zhang H,Yang Y,Ge X,Song F	A rice serine carboxypeptidase-like gene OsBISCPL1 is involved in regulation of defense responses against biotic and oxidative stress.	Gene	420	57-65	2008		
31343	18579782	de Meaux J,Hu JY,Tartler U,Goebel U	Structurally different alleles of the ath-MIR824 microRNA precursor are maintained at high frequency in Arabidopsis thaliana.	Proc. Natl. Acad. Sci. U.S.A.	105	8994-9	2008		
31344	18586868	Vega-Sanchez ME,Zeng L,Chen S,Leung H,Wang GL	SPIN1, a K homology domain protein negatively regulated and ubiquitinated by the  E3 ubiquitin ligase SPL11, is involved in flowering time control in rice.	Plant Cell	20	1456-69	2008	_,SPL11,SE1,HD3A	Spin1, SPIN1,spl11, spl11*, OsPUB11, PUB11,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
31345	18587653	Kim NS,Kim TG,Kim OH,Ko EM,Jang YS,Jung ES,Kwon TH,Yang MS	Improvement of recombinant hGM-CSF production by suppression of cysteine proteinase gene expression using RNA interference in a transgenic rice culture.	Plant Mol. Biol.	68	263-75	2008		
31346	18593744	Ohmori Y,Abiko M,Horibata A,Hirano HY	A transposon, Ping, is integrated into intron 4 of the DROOPING LEAF gene of rice, weakly reducing its expression and causing a mild drooping leaf phenotype.	Plant Cell Physiol.	49	1176-84	2008	DL	DL, dl(lop), lop, dl, dl1
31347	18596062	Itoh J,Sato Y,Nagato Y	The SHOOT ORGANIZATION2 gene coordinates leaf domain development along the central-marginal axis in rice.	Plant Cell Physiol.	49	1226-36	2008		
31348	18614707	Alkhalfioui F,Renard M,Frendo P,Keichinger C,Meyer Y,Gelhaye E,Hirasawa M,Knaff DB,Ritzenthaler C,Montrichard F	A novel type of thioredoxin dedicated to symbiosis in legumes.	Plant Physiol.	148	424-35	2008		
31349	18615082	Niu F,Silver PG,Daley TM,Cheng X,Majer EL	Preseismic velocity changes observed from active source monitoring at the Parkfield SAFOD drill site.	Nature	454	204-8	2008		
31350	18626020	Ma JF,Yamaji N,Mitani N,Xu XY,Su YH,McGrath SP,Zhao FJ	Transporters of arsenite in rice and their role in arsenic accumulation in rice grain.	Proc. Natl. Acad. Sci. U.S.A.	105	9931-5	2008	LSI1,LSI2	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi2, SIET1, OsLsi2
31351	18626624	Kofler R,Bartos J,Gong L,Stift G,Suchankova P,Simkova H,Berenyi M,Burg K,Dolezel J,Lelley T	Development of microsatellite markers specific for the short arm of rye (Secale cereale L.) chromosome 1.	Theor. Appl. Genet.	117	915-26	2008		
31352	18632585	Baani M,Liesack W	Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2.	Proc. Natl. Acad. Sci. U.S.A.	105	10203-8	2008		
31353	18632665	Zhai P,Stanworth C,Liu S,Silberg JJ	The human escort protein Hep binds to the ATPase domain of mitochondrial hsp70 and regulates ATP hydrolysis.	J. Biol. Chem.	283	26098-106	2008		
31354	18633717	Kim NS,Kim TG,Jang YS,Shin YJ,Kwon TH,Yang MS	Amylase gene silencing by RNA interference improves recombinant hGM-CSF production in rice suspension culture.	Plant Mol. Biol.	68	369-77	2008		
31355	18657232	Goepfert S,Vidoudez C,Tellgren-Roth C,Delessert S,Hiltunen JK,Poirier Y	Peroxisomal Delta(3),Delta(2)-enoyl CoA isomerases and evolution of cytosolic paralogues in embryophytes.	Plant J.	56	728-42	2008		
31356	18670134	Tsuchimoto S,Hirao Y,Ohtsubo E,Ohtsubo H	New SINE families from rice, OsSN, with poly(A) at the 3' ends.	Genes Genet. Syst.	83	227-36	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsSN1-1,OsSN1-2,OsSN1-6,OsSN1-10,OsSN1-12,OsSN1-13,OsSN1-25,OsSN1-27,OsSN1-37,OsSN1-51,OsSN1-61,OsSN2-1,OsSN2-2,OsSN2-7,OsSN2-12,OsSN2-14,OsSN2-30,OsSN2-50,OsSN2-8,OsSN3-1,OsSN3-30,OsSN3-42,OsSN3-59,OsSN3-69,OsSN3-76,OsSN3-80,OsSN3-89,OsSN3-81
31357	18670140	Fujioka T,Kaneko F,Kazama T,Suwabe K,Suzuki G,Makino A,Mae T,Endo M,Kawagishi-Kobayashi M,Watanabe M	Identification of small RNAs in late developmental stage of rice anthers.	Genes Genet. Syst.	83	281-4	2008		
31359	17570562	Perales L, Pe?arrubia L, Cornejo MJ.	Induction of a polyubiquitin gene promoter by dehydration stresses in transformed rice cells.	J. Plant Physiol.	165(2)	159-71	2008		
31360	17765359	Kim TH, Park JH, Kim MC, Cho SH.	Cutin monomer induces expression of the rice OsLTP5 lipid transfer protein gene.	J. Plant Physiol.	165(3)	345-9	2008		
31362	18210155	Takasaki H, Mahmood T, Matsuoka M, Matsumoto H, Komatsu S.	Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths.	Mol. Genet. Genomics	279(4)	359-70	2008	ASR5	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
31363	18219493	Nigam N, Singh A, Sahi C, Chandramouli A, Grover A.	SUMO-conjugating enzyme (Sce) and FK506-binding protein (FKBP) encoding rice (Oryza sativa L.) genes: genome-wide analysis, expression studies and evidence for their involvement in abiotic stress response.	Mol. Genet. Genomics	279(4)	371-83	2008	_,_,_	OsFKBP20-1a, OsFKBP20,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2
31364	18320227	Lu J, Sivamani E, Azhakanandam K, Samadder P, Li X, Qu R.	Gene expression enhancement mediated by the 5' UTR intron of the rice rubi3 gene varied remarkably among tissues in transgenic rice plants.	Mol. Genet. Genomics	279(6)	563-72	2008		
31365	18308761	Fujii S, Toriyama K.	DCW11, down-regulated gene 11 in CW-type cytoplasmic male sterile rice, encoding mitochondrial protein phosphatase 2c is relPlant Cell Physiol.ated to cytoplasmic male sterility.	Plant Cell Physiol.	49(4)	633-40	2008	AOX1A,DCW11	Ao1-1, AOX1a, OsAOX1a, AOX 1a,DCW11, OsPP2C13, PP2C13, OsPP22
31366	18319396	Rose AB, Elfersi T, Parra G, Korf I.	Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression.	Plant Cell	20(3)	543-51	2008		
31367	18182026	Woo MO, Ham TH, Ji HS, Choi MS, Jiang W, Chu SH, Piao R, Chin JH, Kim JA, Park BS, Seo HS, Jwa NS, McCouch S, Koh HJ.	Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.).	Plant J.	54(2)	190-204	2008		
31368	18208517	Lee M, Huang T, Toro-Ramos T, Fraga M, Last RL, Jander G.	Reduced activity of Arabidopsis thaliana HMT2, a methionine biosynthetic enzyme, increases seed methionine content.	Plant J.	54(2)	310-20	2008		
31369	18248596	Zhao X, de Palma J, Oane R, Gamuyao R, Luo M, Chaudhury A, Herv? P, Xue Q, Bennett J.	OsTDL1A binds to the LRR domain of rice receptor kinase MSP1, and is required to limit sporocyte numbers.	Plant J.	54(3)	375-87	2008	MSP1,_,_	Msp1, OsMSP1,OsTDL1A, TDL1A, MIL2, OsTDL1A/MIL2, OsTDL1a ,OsTDL1B, TDL1B
31370	18298667	Hochholdinger F, Wen TJ, Zimmermann R, Chimot-Marolle P, da Costa e Silva O, Bruce W, Lamkey KR, Wienand U, Schnable PS.	The maize (Zea mays L.) roothairless 3 gene encodes a putative GPI-anchored, monocot-specific, COBRA-like protein that significantly affects grain yield.	Plant J.	54(5)	888-98	2008	BC1L1,BC1L8	OsBC1L1,OsBC1L8
31371	18049796	Dai M, Hu Y, Ma Q, Zhao Y, Zhou DX.	Functional analysis of rice HOMEOBOX4 (Oshox4) gene reveals a negative function in gibberellin responses.	Plant Mol. Biol.	66(3)	289-301	2008	HOX4	Oshox4, OsHox4
31372	18034312	Inoue H, Takahashi M, Kobayashi T, Suzuki M, Nakanishi H, Mori S, Nishizawa NK.	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice.	Plant Mol. Biol.	66(1-2)	193-203	2008	NAAT3,NAAT5,NAAT6,NAAT2,NAAT4,DMAS1,NAAT1	OsNAAT3,OsNAAT5,OsNAAT6,OsNAAT2,OsNAAT4, OsNAAT1 ,OsDMAS1,OsNAAT1
31373	18180880	Li A, Zhang Y, Wu X, Tang W, Wu R, Dai Z, Liu G, Zhang H, Wu C, Chen G, Pan X.	DH1, a LOB domain-like protein required for glume formation in rice.	Plant Mol. Biol.	66(5)	491-502	2008	DH1	OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16
31374	18231866	Furukawa T, Imamura T, Kitamoto HK, Shimada H.	Rice exonuclease-1 homologue, OsEXO1, that interacts with DNA polymerase lambda and RPA subunit proteins, is involved in cell proliferation.	Plant Mol. Biol.	66(5)	519-31	2008	_	OsEXO1, OsExo1, EXO1
31375	18236009	Zou M, Guan Y, Ren H, Zhang F, Chen F.	A bZIP trA bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.	Plant Mol. Biol.	66(6)	675-83	2008	ABI5	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
31376	18273684	Hu H, You J, Fang Y, Zhu X, Qi Z, Xiong L.	Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice.	Plant Mol. Biol.	67(1-2)	169-81	2008	NAC6,ERD1	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
31377	18354041	Lee S, Woo YM, Ryu SI, Shin YD, Kim WT, Park KY, Lee IJ, An G.	Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.	Plant Physiol.	147(1)	156-68	2008		
31378	18274724	Liu G, Zhang Z, Zhu H, Zhao F, Ding X, Zeng R, Li W, Zhang G.	Detection of QTLs with additive effects and additive-by-environment interaction effects on panicle number in rice (Oryza sativa L.) with single-segment substitution lines.	Theor. Appl. Genet.	116(7)	923-31.	2008		
31379	18335199	Jiang W, Chu SH, Piao R, Chin JH, Jin YM, Lee J, Qiao Y, Han L, Piao Z, Koh HJ.	Fine mapping and candidate gene analysis of hwh1 and hwh2, a set of complementary genes controlling hybrid breakdown in rice.	Theor. Appl. Genet.	116	1117	2008	HWH1,HWH2	hwh1,hwh2
31380	16254725	Chen ZX, Wu JG, Ding WN, Chen HM, Wu P, Shi CH.	Morphogenesis and molecular basis on naked seed rice, a novel homeotic mutation of OsMADS1 regulating transcript level of AP3 homologue in rice.	Planta.	223(5)	882-90	2006	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
31381		C. C. Su , J. Wan , H. Q. Zhai, C. M. Wang , L. H. Sun , H. Yasui and A. Yoshimura	A new locus for resistance to brown planthopper identified in the indica rice variety DV85.	Plant Breeding	124	93-95	2005	qBPH11	Qbph11
31383	18313797	Hu,Y., Zhao,L., Chong,K. and Wang,T.	Overexpression of OsERF1, a novel rice ERF gene, up-regulates ethylene-responsive genes expression besides affects growth and development in Arabidopsis	J. Plant Physiol.	165(16)	1717-1725	2008	ERF93	OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168
31384	18820696	Jin,J., Huang,W., Gao,J.P., Yang,J., Shi,M., Zhu,M.Z., Luo,D. and Lin,H.X.	Genetic control of rice plant architecture under domestication	Nat Genet	40(11)	1365-1369	2008	PROG1	OsPROG1
31386	18726583	Kim,S.I., Andaya,C.B., Newman,J.W., Goyal,S.S. and Tai,T.H.	Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK	Theor. Appl. Genet.	117(8)	1291-1301	2008	_	OsMIK, LPA
31387	0	Long,Y., Zhao,L., Niu,B., Su,J., Wu,H., Chen,Y., Zhang,Q., Guo,J., Zhuang,C., Mei,M., Xia,J., Wang,L., Wu,H.B. and Liu,Y.-G.	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes	Proc. Natl. Acad. Sci. U.S.A.			2008		
31388	18726584	Matsubara,K., Kono,I., Hori,K., Nonoue,Y., Ono,N., Shomura,A., Mizubayashi,T., Yamamoto,S., Yamanouchi,U., Shirasawa,K., Nishio,T. and Yano,M.	Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivars	Theor. Appl. Genet.	117(6)	935-945	2008	HD6,HD16,SE1,E3,HD3B,EF1	Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,,Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31391	17112320	Tang,T., Lu,J., Huang,J., He,J., McCouch,S.R., Shen,Y., Kai,Z., Purugganan,M.D., Shi,S. and Wu,C.-I.	Genomic Variation in Rice: Genesis of Highly Polymorphic Linkage Blocks during Domestication	PLoS Genet. 2 (11), e199  REMARK Publication Status: Online-Only	2(11)		2006	_,_,_,_,_,_,_,_,PITA,SPL7,SBE1,_,GI,CCA1,HKT1,_,_,_,qSH1,MSP1	,,RVDE1,,OsFbox553, Os_F0250,,,Xa21, OsXA21, OsXA21-C11, XA21-C11,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,DFO1, EMF1, OsDFO1, OsEMF1, CCP1, OsCCP1,OsGI, Gi, Os-GI,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,,,,qSH1, qsh1, qSH-1,Msp1, OsMSP1
31392	0	Tang,X., Wu,H., Jia,M., Yu,X. and He,Y.	Isolation and expressional analysis of cDNA encoding a dsRNA binding protein homolog OsRBP of rice	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	28(1)	41-45	2002	_	OsRBP, OsDRB1b, DRB1b
31393	18820698	Wang,E., Wang,J., Zhu,X., Hao,W., Wang,L., Li,Q., Zhang,L., He,W., Lu,B., Lin,H., Ma,H., Zhang,G. and He,Z.	Control of rice grain-filling and yield by a gene with a potential signature of domestication	Nat Genet	40(11)	1370-1374	2008	GIF1	gif1, CIN2, OsCIN2, OsGIF1
31394	18281124	Yamauchi,T., Moritoh,S., Johzuka-Hisatomi,Y., Ono,A., Terada,R., Nakamura,I. and Iida,S.	Alternative splicing of the rice OsMET1 genes encoding maintenance DNA methyltransferase	J. Plant Physiol.	165(17)	1774-82	2008	MET1B,MET1A	OsMET1b, OsMET1-2, MET1b, MET1,OsMET1a, OsMET1-1, MET1a, MET1-1
31395	0	Yang,H.J.		Thesis  Department of Biological Sciences, University of Cambridge, Cambridge, United Kingdom			2001		
31396	18594992	Yan,S., Yan,C.J., Zeng,X.H., Yang,Y.C., Fang,Y.W., Tian,C.Y., Sun,Y.W., Cheng,Z.K. and Gu,M.H.	ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice	Plant Mol. Biol.	68(3)	239-250	2008	RL7,RL8,RL9	rl7,rl8,rl9, SLL1/RL9, SLL1
31397	18712516	Zhou,H.F., Zheng,X.M., Wei,R.X., Second,G., Vaughan,D.A. and Ge,S.	Contrasting population genetic structure and gene flow between Oryza rufipogon and Oryza nivara	Theor. Appl. Genet.	117(7)	1181-1189	2008	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
31398	19098269	Ammiraju,J.S., Lu,F., Sanyal,A., Yu,Y., Song,X., Jiang,N., Pontaroli,A.C., Rambo,T., Currie,J., Collura,K., Talag,J., Fan,C., Goicoechea,J.L., Zuccolo,A., Chen,J., Bennetzen,J.L., Chen,M., Jackson,S. and Wing,R.A.	Dynamic Evolution of Oryza Genomes Is Revealed by Comparative Genomic Analysis of a Genus-Wide Vertical Data Set	Plant Cell	20(12)	3191-3209	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,ADH2,_,_,ADH1,_,_,_,_,_,_,_,_,_	Os_F0257, Fbox-2,RZ53,Adh3,NifS,prx132, prx133,OsPI4K1, OsPI4K2,,,,OsFbox592, Os_F0128, Fbox-4,,,,,,,Adh2*, Adh2,OsFbox591, Os_F0435, Fbox-5,OsFbox594, Os_F0295, Fbox-1,Adh1, Adh1/2, adh1/adh2, OsADH1,OsFbox593, Os_F0278, Fbox-3,OsFbox590, Os_F0068, Fbox-6,Os_F0761, Fbox-7,OsFbox589, Os_F0137, Fbox-8,OsFbox588, Os_F0365, Fbox-10,Os_F0690, Fbox-12-pseuso,OsFbox586, Os_F0088, Fbox-13,Fbox-14,Fbox-9-pseudo, Os_F0394
31399	18573188	Cao,Y., Yang,Y., Zhang,H., Li,D., Zheng,Z. and Song,F.	Overexpression of a rice defense-related F-box protein gene OsDRF1 in tobacco improves disease resistance through potentiation of defense gene expression	Physiol Plant	134(3)	440-452	2008	_	OsDRF1, OsFbox209, Os_F0001
31400	19027836	Cheng,X., Liu,G., Ye,G., Wang,H., Shen,X., Wu,K., Xie,J. and Altosaar,I.	Screening and cloning of antimicrobial DNA sequences using a vital staining method	Gene	430(1-2)	132-139	2009	_,_,TOND1,GLP8-2,DHN1,RAB16B,LEA3-1,LEA16	prx33,,,OsGLP8-2, GER3, OsGER3, GLP16, OsEnS-117,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,rab21, OsLEA28, OsRAB16D, OsRAB16b,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsLEA16
31401	0	Chen,P., Wang,C., Li,K., Chang,J., Wang,Y., Yang,G., Shewry,P.R. and He,G.	Cloning, expression and characterization of novel avenin-like genes in wheat and related species	J. Cereal Sci.	48(3)	734-740	2008	_	
31402	18824474	Fukao,T., Harris,T. and Bailey-Serres,J.	Evolutionary analysis of the Sub1 gene cluster that confers submergence tolerance to domesticated rice	Ann. Bot.	103(2)	143-150	2009	SUB1B,ERF68,SUB1C,SUB1A	Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
31403	18808453	Hayashi,K. and Yoshida,H.	Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retrotransposon as a promoter	Plant J.	57(3)	413-25	2009	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
31404	0	Shapter,F.M., Eggler,P., Lee,L.S. and Henry,R.J.	Variation in Granule Bound Starch Synthase I (GBSSI) loci amongst Australian wild cereal relatives (Poaceae)	J. Cereal Sci.	49(1)	4-11	2009	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
31405	19168991	Teranishi,C., Yoshida,K. and Miyashita,N.T.	DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species	Genes Genet. Syst.	83(5)	403-415	2008	SPW1	SPW1, spw1, MADS16, OsMADS16
31407	19825617	Wang,Z., Xing,S., Birkenbihl,R.P. and Zachgo,S.	Conserved Functions of Arabidopsis and Rice CC-Type Glutaredoxins in Flower Development and Pathogen Response	Mol Plant	2	323-35	2009	GRX8,GRX13	OsGRX8, OsROXY1, OsROXY2,OsGRX13, OsROXY1
31408	0	Wu,J., Mizuno,H., Sasaki,T. and Matsumoto,T.	Comparative Analysis of Rice Genome Sequence to Understand the Molecular Basis of Genome Evolution	Rice 1, 119-126  REMARK Publication_Status: Available-Online			2008	SD1,ADH1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Adh1, Adh1/2, adh1/adh2, OsADH1
31409	19074278	Yano,K., Yoshida,S., Muller,J., Singh,S., Banba,M., Vickers,K., Markmann,K., White,C., Schuller,B., Sato,S., Asamizu,E., Tabata,S., Murooka,Y., Perry,J., Wang,T.L., Kawaguchi,M., Imaizumi-Anraku,H., Hayashi,M. and Parniske,M.	From the Cover: CYCLOPS, a mediator of symbiotic intracellular accommodation	Proc. Natl. Acad. Sci. U.S.A.	105(51)	20540-20545	2008	IPD3	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS
31410	18980655	Yoshii,M., Shimizu,T., Yamazaki,M., Higashi,T., Miyao,A., Hirochika,H. and Omura,T.	Disruption of a novel gene for a NAC-domain protein in rice confers resistance to Rice dwarf virus	Plant J.	57(4)	615-25	2009	RIM1	ONAC054, ONAC54, NAC54
31411	18952859	Yuan,Z., Gao,S., Xue,D.W., Luo,D., Li,L.T., Ding,S.Y., Yao,X., Wilson,Z.A., Qian,Q. and Zhang,D.B.	RETARDED PALEA1 (REP1) Controls Palea Development and Floral Zygomorphy in Rice	Plant Physiol.	149(1)	235-244	2009	_,REP1,FC1	OsTCP22, OsTCP15, TCP22, TCP15,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
31412	19033526	Yu,Y., Tang,T., Qian,Q., Wang,Y., Yan,M., Zeng,D., Han,B., Wu,C.I., Shi,S. and Li,J.	Independent Losses of Function in a Polyphenol Oxidase in Rice: Differentiation in Grain Discoloration between Subspecies and the Role of Positive Selection under Domestication	Plant Cell	20(11)	2946-2959	2008	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
31413	18939965	Zhou,Y., Li,S., Qian,Q., Zeng,D., Zhang,M., Guo,L., Liu,X., Zhang,B., Deng,L., Liu,X., Luo,G., Wang,X. and Li,J.	BC10, A DUF266-Containing and Golgi-Located Type II Membrane Protein, Is Required for Cell Wall Biosynthesis in Rice (Oryza sativa L.)	Plant J.	57(3)	446-62	2008	BC10	BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116
31414		Ichitani K, Fukuta Y, Taura S, Sato M	Chromosomal location of Hwc2, one of the complementary hybrid weakness genes, in rice	Plant Breeding	120	523-525	2001	HWC2	Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2
31415		Sato et al.	Gene symbols for gametic effect, sterility and weakness.	RGN	4	46-51	1987	HWC2,HWC1	Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2,Hwc1(L2a),L-2-a, Lr1, Hwc-1, L2a
31416	17375279	Ichitani K, Namigoshi K, Sato M, Taura S, Aoki M, Matsumoto Y, Saitou T, Marubashi W, Kuboyama T.	Fine mapping and allelic dosage effect of Hwc1, a complementary hybrid weakness gene in rice.	Theor. Appl. Genet.	114(8)	1407-15	2007	HWC1	Hwc1(L2a),L-2-a, Lr1, Hwc-1, L2a
31417		Nino-Liu, D.O., P.C. Ronald and A.J. Bogdanove	Pathogen profile Xanthomonas oryzae pathovars: model pathogens of a model crop.	Mol. Plant Pathol.	7(5)	303-324	2006	XA14,XA12,XA2,XA24,XA29,XA8,XA25,XA11,XA4,XA23,XA7,XA5,XA10,XA27,XA1,XA3,XA13,XA21	Xa14,Xa12(Xa kg), Xakg, Xa12,Xa2,xa24(t)*, xa24,Xa29,xa8,Xa25(t), Xa25*, Xa25, Xa-25(t),Xa11(Xa pt), Xa11, Xapt,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,Xa23(t)*, Xa23(t), Xa23, Xa23-Ni ,Xa7,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,Xa10, Xa-10,Xa27(t), Xa27(t)*, Xa27,Xa1(Xe), Xe, Xa1, Xa-1,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,Xa21*, Xa21, OsXA21
31418	18943128	Lee, K. S., Rasabandith, S., Angeles, E.R. and Khush, G. S.	Inheritance of resistance to bacterial blight in 21 cultivars of rice.	Phytopathology	93	147-152	2003	XA28	xa28
31419	15473325	Tan, G., Ren, X., Weng, Q. M., Shi, Z. Y., Zhu, L. L. and He, G. C.	Mapping of a resistance gene to bacterial blight in rice line introgrssed from Oryza officinalis.	Acta Genetica Sinica	31(7)	714-729	2004	XA29	Xa29
31420		Jin, X., C. Wang, Q. Yang, Q. Jiang, Y. Fan, G. Liu and K. Zhao	Breeding of near-isogenic line CBB30 and molecular mapping of Xa30(t), a new resistance gene to bacterial blight in rice.	Sci. Agric. Sin.	40	1094-1100	2007	XA30	Xa30(t)
31421		Singh, K., Y. Vikal, R. Mahajan, K.K. Cheema, D. Bhatia, R. Sharma, J.S. Lore and T.S. Bharaj	Three novel bacterial blight resistance genes identified, mapped and transfer to cultivated rice O. sativa L.	In: The 2nd International Conference on Bacterial Blight of Rice, Nanjing, China		82-84	2007	XA31,XA32	Xa31,Xa32
31422	16936841	Nakazaki T, Tsukiyama T, Okumoto Y, Kageyama D, Naito K, Inouye K, Tanisaka T.	Distribution, structure, organ-specific expression, and phylogenic analysis of the pathogenesis-related protein-3 chitinase gene family in rice (Oryza sativa L.).	Genome	49(6)	619-30	2006	CHT10,CHT6,CHT9,CHT11,CHT8,CHT5,CHIA1;175,RCH10	Cht10,Cht6,Cht9, Cht1,Cht11,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14,Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3,OsChia1;175, PC, Cht7, OsChia1d, Chia1d ,RCH10*, Cht13, Cht12, Rcht2
31423	17273822	Mori M, Tomita C, Sugimoto K, Hasegawa M, Hayashi N, Dubouzet JG, Ochiai H, Sekimoto H, Hirochika H, Kikuchi S.	Isolation and molecular characterization of a Spotted leaf 18 mutant by modified activation-tagging in rice.	Plant Mol. Biol.	63(6)	847-60	2007	SPL18	Spl18, OsAT1
31424	17507777	Takagi K, Ishikawa N, Maekawa M, Tsugane K, Iida S.	Transposon display for active DNA transposons in rice.	Genes Genet. Syst.	82(2)	109-22	2007	ADART,NDART1	aDart,nDart, nDART1, nDART
31425	17619151	Woo YM, Park HJ, Su'udi M, Yang JI, Park JJ, Back K, Park YM, An G	Constitutively wilted 1, a member of the rice YUCCA gene family, is required for maintaining water homeostasis and an appropriate root to shoot ratio.	Plant Mol. Biol.	65(1-2)	125-36	2007	COW1	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
31426	17721709	Xue Y, Jiang L, Su N, Wang JK, Deng P, Ma JF, Zhai HQ, Wan JM.	The genetic basic and fine-mapping of a stable quantitative-trait loci for aluminium tolerance in rice.	Planta.	227(1)	255-62	2007	ALT9	Alt-9,qPRE-9
31427	18357468	Wu C, Bordeos A, Madamba MR, Baraoidan M, Ramos M, Wang GL, Leach JE, Leung H.	Rice lesion mimic mutants with enhanced resistance to diseases.	Mol. Genet. Genomics	279(6)	605-19	2008	SPL26,SPL25,SPL27,SPL17,SPL19,SPL20,SPL21,SPL22,SPL23,SPL24	Spl26,spl25,Spl27,spl17,spl19,spl20,spl21,spl22,spl23,Spl24
31428	18596034	Koszelak-Rosenblum M, Krol AC, Simmons DM, Goulah CC, Wroblewski L, Malkowski MG.	His-311 and Arg-559 are key residues involved in fatty acid oxygenation in pathogen-inducible oxygenase.	J. Biol. Chem.	283(36)	24962-71	2008	COX-1,COX-2	COX-1,COX-2
31429	18663450	Ueda S, Horino T, Arii K, Morita T, Takao T, Hashimoto K.	Magnetic resonance imaging of palindromic rheumatism.	Rheumatol Int.	29(1)	87-9	2008	CHT11	Cht11
31430	15905328	Guimil S, Chang HS, Zhu T, Sesma A, Osbourn A, Roux C, Ioannidis V, Oakeley EJ, Docquier M, Descombes P, Briggs SP, Paszkowski U.	Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization.	Proc. Natl. Acad. Sci. U.S.A.	102(22)	8066-70	2005	AM34,AM20,AM15,AM24,AM26,AM29,AM31,AM42,AM10,AM39,AM3,AM2,AM1,AM14,AM11,GRAS16,AM25,BAD1	AM34,AM20,AM15,AM24,AM26,AM29,AM31,AM42,AM10,AM39,AM3,AM2,AM1, prx53,AM14,AM11,AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
31431	17129318	Bradbury LM, Fitzgerald TL, Henry RJ, Jin Q, Waters DL.	The gene for fragrance in rice.	Plant Biotechnol J.	3(3)	363-70	2005	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
31432	18340459	Yang J, Yunying C, Zhang H, Liu L, Zhang J.	Involvement of polyamines in the post-anthesis development of inferior and superior spikelets in rice.	Planta.	228(1)	137-49	2008	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
31433	18509653	Roychoudhury A, Basu S, Sarkar SN, Sengupta DN.	Comparative physiological and molecular responses of a common aromatic indica rice cultivar to high salinity with non-aromatic indica rice cultivars	Plant Cell Rep.	27(8)	1395-410.	2008	SAMDC	SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
31434	18704694	Bradbury LM, Gillies SA, Brushett DJ, Waters DL, Henry RJ.	Inactivation of an aminoaldehyde dehydrogenase is responsible for fragrance in rice.	Plant Mol. Biol.	68(4-5)	439-49.	2008	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
31436	18852152	Banba M, Gutjahr C, Miyao A, Hirochika H, Paszkowski U, Kouchi H, Imaizumi-Anraku H.	Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway.	Plant Cell Physiol.	49(11)	1659-71.	2008	CASTOR,POLLUX,DMI3	Os-CASTOR,OsPOLLUX, Os-POLLUX,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
31437	18978069	Chen C, Fan C, Gao M, Zhu H.	Antiquity and function of CASTOR and POLLUX, the twin ion channel-encoding genes key to the evolution of root symbioses in plants.	Plant Physiol.	149(1)	306-17.	2009	CASTOR,POLLUX	Os-CASTOR,OsPOLLUX, Os-POLLUX
31438	19033192	Long Y, Zhao L, Niu B, Su J, Wu H, Chen Y, Zhang Q, Guo J, Zhuang C, Mei M, Xia J, Wang L, Wu H, Liu YG.	Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes.	Proc. Natl. Acad. Sci. U.S.A.	105(48)	18871-6.	2008	SAF,SAM	SaF, OsFbox019, OsFbox19, Os_F0070,SaM 
31439	19033527	Gutjahr C, Banba M, Croset V, An K, Miyao A, An G, Hirochika H, Imaizumi-Anraku H, Paszkowski U.	Arbuscular mycorrhiza-specific signaling in rice transcends the common symbiosis signaling pathway.	Plant Cell	20(11)	2989-3005.	2008	AM1,AM2,AM26,AM29,AM31,AM39,AM42,CASTOR,NUP85,POLLUX,NUP133,AM34,AM25,BAD1,SYMRK,AM15,AM20,AM24,PT11,AM14,GRAS16,DMI3,AM10,AM3,AM11	AM1, prx53,AM2,AM26,AM29,AM31,AM39,AM42,Os-CASTOR,NUP85,OsPOLLUX, Os-POLLUX,NUP133,AM34,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,OsSYMRK,AM15,AM20,AM24,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,AM14,AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,AM10,AM3,AM11
31441	17893721	Luo Z, Yang Z, Zhong B, Li Y, Xie R, Zhao F, Ling Y, He G.	Genetic analysis and fine mapping of a dynamic rolled leaf gene, RL10(t), in rice (Oryza sativa L.).	Genome	50(9)	811-7.	2007	RL10	rl10
31442	19011003	Manosalva PM, Davidson RM, Liu B, Zhu X, Hulbert SH, Leung H, Leach JE.	A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice.	Plant Physiol.	149(1)	286-96.	2009	GLP8-1,GLP8-3,GLP8-5,GLP12-1,GLP8-12,GLP8-6,GLP8-8,GLP8-9,GLP8-11,GLP8-4,GLP8-10,GLP12-3,GLP12-4,GLP8-2,GLP8-7,GLP12-2	OsGLP8-1,OsGLP8-3, GER2,OsGLP8-5,OsGLP12-1,OsGLP8-12,OsGLP8-6,OsGLP8-8,OsGLP8-9,OsGLP8-11, RGLP1, OsRGLP1,OsGLP8-4, GER1. OsGer1,OsGLP8-10, OsRGLP2, RGLP2,OsGLP12-3,OsGLP12-4,OsGLP8-2, GER3, OsGER3, GLP16, OsEnS-117,OsGLP8-7, GER6, OsRGLP2, RGLP2,OsGLP12-2
31443	19104064	Dai S, Wei X, Alfonso AA, Pei L, Duque UG, Zhang Z, Babb GM, Beachy RN.	Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.	Proc. Natl. Acad. Sci. U.S.A.	105(52)	21012-6.	2008	RF2B,RF2A	RF2b, OsbZIP30,RF2a, OsbZIP75
31444		Yan Changjie , Yan Song , Zhang Zhengqiu, Liang Guohua , Lu Jufei and Gu Minghong 	Genetic analysis and gene fine mapping for a rice novel mutant (rl9(t)) with rolling leaf character.	Chin. Sci. Bull.	51	63-69	2006	RL7,RL8,RL9	rl7,rl8,rl9, SLL1/RL9, SLL1
31445		L. Bazrkar, A. J. Ali , N. A. Babaeian, A. A. Ebadi, M. Allahgholipour, K. Kazemitabar and G. Nematzadeh	Tagging of four fertility restorer loci for wild abortive?cytoplasmic male sterility system in rice ( Oryza sativa L.) using microsatellite markers.	Euphytica	164	669-677	2008	RF7	RF7
31446	17086445	Fujii S, Komatsu S, Toriyama K.	Retrograde regulation of nuclear gene expression in CW-CMS of rice.	Plant Mol. Biol.	63(3)	405-17.	2007	AOX1A,AOX1B,AOX1C,[CMS-CW],RMS	Ao1-1, AOX1a, OsAOX1a, AOX 1a,AOX1b, OsAOX1b,OsAOX1c,[cms-CW],RFcw, RFCW, RfcwARf17
31447	18301900	He X, Miyasaka SC, Fitch MM, Moore PH, Zhu YJ.	Agrobacterium tumefaciens-mediated transformation of taro (Colocasia esculenta (L.) Schott) with a rice chitinase gene for improved tolerance to a fungal pathogen Sclerotium rolfsii.	Plant Cell Rep.	27(5)	903-9.	2008	CHT11	Cht11
31450	17333504	Nozoye T, Inoue H, Takahashi M, Ishimaru Y, Nakanishi H, Mori S, Nishizawa NK.	The expression of iron homeostasis-related genes during rice germination.	Plant Mol. Biol.	64(1-2)	35-47.	2007	DMAS1,NAAT1	OsDMAS1,OsNAAT1
31451	17406793	Lee SK, Hwang SK, Han M, Eom JS, Kang HG, Han Y, Choi SB, Cho MH, Bhoo SH, An G, Hahn TR, Okita TW, Jeon JS.	Identification of the ADP-glucose pyrophosphorylase isoforms essential for starch synthesis in the leaf and seed endosperm of rice (Oryza sativa L.).	Plant Mol. Biol.	65(4)	531-46.	2007	AGPL3,AGPS1,AGPL4,AGPL1,AGPS2,AGPL2	OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL4, APL4, OsAPL4, OsSTA193,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
31452	17468002	Narayanan NN, Vasconcelos MW, Grusak MA.	Expression profiling of Oryza sativa metal homeostasis genes in different rice cultivars using a cDNA macroarray.	Plant Physiol. Biochem.	45(5)	277-86.	2007	NAS1,ZIP7,ZIP10,NAAT,YSL19,YSL5,YSL7,YSL12,YSL16,YSL8,YSL17,NRAMP5,YSL13,ZIP3,NRAMP2,NRAMP7,FER1,YSL18,YSL6,ZIP6,ZIP5,NRAMP6,FRO1,FDH,NRAMP4,FER2,NRAMP1,PDR9,FRO2,NAS2,ZIP2,YSL2,ZIP1	OsNAS1,OsZIP7,OsZIP10,OsNAAT,OsYSL19,OsYSL5, OsYs9 ,OsYSL7, OsYs4,OsYSL12, OsYs11 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL8, OsYs3 ,OsYSL17, OsYs18 ,OsNRAMP5, OsNramp5,OsYSL13, OsYs12 ,OsZIP3,OsNramp2, OsNRAMP2,OsNRAMP7,OsFER1, OsFer1 ,OsYSL18, OsYs2 ,OsYSL6, OsYs8 ,OsZIP6,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6,OsFRO1,OsFDH, FDH 1,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,OsFER2, OsFer2,OsNramp1, OsNRAMP1, OsNramp6,OsPDR9, ospdr9, OsPDR3, PDR3,OsFRO2,OsNAS2,OsZIP2, OsZIP11, ZIP11 ,OsYSL2, Os-YSL2, OsYs6 ,OsZIP1
31453	18160413	Yang JH, Seo HH, Han SJ, Yoon EK, Yang MS, Lee WS.	Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells.	Nucleic Acids Res.	36(4)	1220-6.	2007	SHL2,RDR3	shl2, SHL2, sh2, OsRDR6, RDR6,OsRDR3, OsRDR3a
31454	18217708	Hirose S, Kawahigashi H, Tagiri A, Ohkawa Y.	Herbicide-induced anthocyanin accumulation in transgenic rice by expression of rice OSB2 under the control of rice CYP72A21 promoter.	J. Agric. Food Chem.	56(4)	1259-63.	2008	ANS	ANS, OsANS1, ANS1, LDOX
31455	18224446	Suzuki M, Tsukamoto T, Inoue H, Watanabe S, Matsuhashi S, Takahashi M, Nakanishi H, Mori S, Nishizawa NK.	Deoxymugineic acid increases Zn translocation in Zn-deficient rice plants.	Plant Mol. Biol.	66(6)	609-17.	2008	NAAT1,DMAS1	OsNAAT1,OsDMAS1
31456	18700826	Quilis J, Penas G, Messeguer J, Brugidou C, San Segundo B.	 The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitivity to abiotic stresses in transgenic rice.	Mol. Plant Microbe Interact.	21(9)	1215-31.	2008	RDR1,PR10A	OsRDR1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
31457	18726614	Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C.	 Functional characterization of key structural genes in rice flavonoid biosynthesis.	Planta.	228(6)	1043-54.	2008	F3H1,RD,F3'H,ANS,_,_,RA,CHS	OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H,Rd, DFR, OsDFR, OS-DFR,OsF3'H, OsCYP75B3, CYP75B3,ANS, OsANS1, ANS1, LDOX,OsbHLH016, Kala4, OSB2,gh1, GH1, OsCHI, Cfi, CHI,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26
31458	18761634	Chen C, Ane JM, Zhu H.	OsIPD3, an ortholog of the Medicago truncatula DMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice.	New Phytol.	80(2)	311-5.	2008	IPD3	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS
31459	18826656	Kapoor M, Arora R, Lama T, Nijhawan A, Khurana JP, Tyagi AK, Kapoor S.	Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice.	BMC Genomics.	9	451	2008	RDR1,AGO2,AGO14,SHL4,DCL1A,DCL1B,DCL1C,DCL2B,AGO16,RDR4,AGO11,AGO12,AGO13,AGO15,AGO17,AGO3,DCL3B,DCL2A,DCL3A,RDR3,AGO1D,AGO18,AGO1B,AGO4B,AGO4A,RDR2,AGO1C,AGO1A	OsRDR1,OsAGO2,OsAGO14,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsDCL1a,OsDCL1b,OsDCL1c,OsDCL2b,OsAGO16, OsAGO6, ZP1,OsRDR4, OsRDR3b,OsAGO11,OsAGO12,OsAGO13,OsAGO15,OsAGO17,OsAGO3,OsDCL3b,OsDCL2a, OsDCL2,OsDCL3a,OsRDR3, OsRDR3a,OsAGO1d, AGO1d,OsAGO18,OsAGO1b, AGO1b, AGO1-2 ,OsAGO4b, AGO4-1 ,OsAGO4a, AGO4-2,OsRDR2,OsAGO1c, OsAGO1, AGO1, AGO1c,OsAGO1a, AGO1a, AGO10, AGO1-1 
31460	18830621	Moons A.	Transcriptional profiling of the PDR gene family in rice roots in response to plant growth regulators, redox perturbations and weak organic acid stresses.	Planta.	229(1)	53-71.	2008	PDR20,PDR8,PDR9,PDR6	OsPDR20,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsPDR9, ospdr9, OsPDR3, PDR3,OsPDR6, OsABCG31, OsABCG31_1
31461	19017626	Kuramata M, Masuya S, Takahashi Y, Kitagawa E, Inoue C, Ishikawa S, Youssefian S, Kusano T.	 Novel cysteine-rich peptides from Digitaria ciliaris and Oryza sativa enhance tolerance to cadmium by limiting its cellular accumulation.	Plant Cell Physiol.	50(1)	106-17.	2009	CDT4,CDT2,CDT5,CDT3,CDT1	OsCDT4,OsCDT2,OsCDT5,OsCDT3,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
31462	19049971	Inoue H, Kobayashi T, Nozoye T, Takahashi M, Kakei Y, Suzuki K, Nakazono M, Nakanishi H, Mori S, Nishizawa NK.	Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid transporter expressed in the roots and is essential for iron uptake in early growth of the seedlings.	J. Biol. Chem.	284(6)	3470-9.	2009	YSL15	OsYSL15, OsYs7
31463	19052152	Shin JH, Kim SR, An G.	Rice aldehyde dehydrogenase7 is needed for seed maturation and viability.	Plant Physiol.	149(2)	905-15.	2009	ALDH7	OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6 
31464	19099599	Wan L, Li D, Zhang D, Liu X, Fu WJ, Zhu L, Deng M, Sun F, Qian M.	Conservation and implications of eukaryote transcriptional regulatory regions across multiple species.	BMC Genomics.	9	623	2008	ALYL1	OsALYL1
31466	16263903	Ishimaru Y, Suzuki M, Kobayashi T, Takahashi M, Nakanishi H, Mori S, Nishizawa NK.	OsZIP4, a novel zinc-regulated zinc transporter in rice.	J. Exp. Bot.	56(422)	3207-14.	2005	ZIP6,ZIP1,ZIP7,ZIP3,ZIP4,ZIP5	OsZIP6,OsZIP1,OsZIP7,OsZIP3,OsZIP4,OsZIP5, OsZIP8, ZIP8, OsZIP9
31467	17630290	Ishimaru Y, Masuda H, Suzuki M, Bashir K, Takahashi M, Nakanishi H, Mori S, Nishizawa NK.	Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants.	J. Exp. Bot.	58(11)	2909-15.	2007	ZIP4	OsZIP4
31468	18038191	Yang X, Huang J, Jiang Y, Zhang HS.	Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.).	Mol. Biol. Rep.	36(2)	281-7.	2009	ZIP7,ZIP5	OsZIP7,OsZIP5, OsZIP8, ZIP8, OsZIP9
31469	18071708	Jain M, Tyagi AK, Khurana JP.	Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1, from rice confers abiotic stress tolerance in transgenic Arabidopsis plants.	Plant Cell Rep.	27(4)	767-78.	2008	TOP6A3,TOP6B,TOP6A1,TOP6A2	OsTOP6A3, OsSPO11-3, OsSPO11C,OsTOP6B, OsSPO11-6B,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B
31470	18707797	Li GW, Peng YH, Yu X, Zhang MH, Cai WM, Sun WN, Su WA.	Transport functions and expression analysis of vacuolar membrane aquaporins in response to various stresses in rice.	J. Plant Physiol.	165(18)	1879-88.	2008	TIP3;2,TIP1;2,TIP4;3,TIP2;1,TIP3;1,TIP5;1,TIP4;2,TIP4;1,TIP2;2,TIP1;1	OsTIP3;2, TIP3-2, OsEnS-70,OsTIP1;2, TIP1-2, TIP1.2, TIP1,OsTIP4;3, TIP4.3, TIP4-3,OsTIP2;1, TIP2-1, TIP2,OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139,OsTIP5;1,OsTIP4;2, TIP4.2, TIP4-2,OsTIP4;1, TIP4-1,OsTIP2;2, TIP2-2,OsTIP1;1, TIP1-1, rTIP1
31471	19458265	Fujii S, Toriyama K.	Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in cytoplasmic male sterile rice plants.	Proc. Natl. Acad. Sci. U.S.A.	106(23)	9513-18	2009	RMS	RFcw, RFCW, RfcwARf17
31472	18940787	Ashikawa,I., Hayashi,N., Yamane,H., Kanamori,H., Wu,J., Matsumoto,T., Ono,K. and Yano,M.	Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance	Genetics	180(4)	2267-2276	2008	PIKM,PIK	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
31473	19298266	Hagiwara,W.E., Uwatoko,N., Sasaki,A., Matsubara,K., Nagano,H., Onishi,K. and Sano,Y.	Diversification in flowering time due to tandem FT-like gene duplication, generating novel Mendelian factors in wild and cultivated rice	Mol. Ecol.	18(7)	1537-49	2009	RFT1,HD3A	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
31475	19244140	Huang,C.F., Yamaji,N., Mitani,N., Yano,M., Nagamura,Y. and Ma,J.F.	A Bacterial-Type ABC Transporter Is Involved in Aluminum Tolerance in Rice	Plant Cell	21(2)	655-667	2009	STAR1,STAR2	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsSTAR2, OsSATR2
31476	19071208	Huang,J., Zhang,K., Shen,Y., Huang,Z., Li,M., Tang,D., Gu,M. and Cheng,Z.	Identification of a high frequency transposon induced by tissue culture, nDaiZ, a member of the hAT family in rice	Genomics	93(3)	274-281	2009	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,GH2,_	nDaiZ9,nDaiZ1,nDaiZ2,nDaiZ3,nDaiZ4,nDaiZ5,nDaiZ6,nDaiZ7,nDaiZ8,nDaiZ10,nDaiZ11,nDaiZ12,nDaiZ14,nDaiZ15,nDaiZ16,nDaiZ13,DaiZ4,DaiZ1,DaiZ6,DaiZ10,gh2, CAD2, CAD, OsCAD2, GH2 ,DaiZ7
31477	19305410	Huang,X., Qian,Q., Liu,Z., Sun,H., He,S., Luo,D., Xia,G., Chu,C., Li,J. and Fu,X.	Natural variation at the DEP1 locus enhances grain yield in rice	Nat Genet	41(4)	494-497	2009	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
31478	19228340	Kawakatsu,T., Taramino,G., Itoh,J., Allen,J., Sato,Y., Hong,S.-K., Yule,R., Nagasawa,N., Kojima,M., Kusaba,M., Sakakibara,H., Sakai,H. and Nagato,Y.	PLASTOCHRON3/GOLIATH encodes a glutamate carboxypeptidase required for proper development in rice	Plant J.	58i6j	1028-1040	2009	GO,PLA2,PLA1	go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,pla2, pla2(pla2-1, pla2-2), plt2, LHD2,pla1, OsPLA1, plt1, CYP78A11
31479	19181864	Lai,K.W., Yau,C.P., Tse,Y.C., Jiang,L. and Yip,W.K.	Heterologous expression analyses of rice OsCAS in Arabidopsis and in yeast provide evidence for its roles in cyanide detoxification rather than in cysteine synthesis in vivo	J. Exp. Bot.	60(3)	993-1008	2009	_	OsCAS
31480	19164767	Lu,F., Ammiraju,J.S., Sanyal,A., Zhang,S., Song,R., Chen,J., Li,G., Sui,Y., Song,X., Cheng,Z., de Oliveira,A.C., Bennetzen,J.L., Jackson,S.A., Wing,R.A. and Chen,M.	Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes	Proc. Natl. Acad. Sci. U.S.A.	106(6)	2071-2076	2009	MOC1	moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33
31481	0	Ren,Y. and Zhao,J.	Functional analysis of the rice metallothionein gene OsMT2b promoter in transgenic Arabidopsis plants and rice germinated embryos	Plant Sci.	176(4)	528-538	2009	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
31482	0	Udomchalothorn,T., Maneeprasobsuk,S., Bangyeekhun,E., Boon-Long,P. and Chadchawan,S.	The role of the bifunctional enzyme, fructose-6-phosphate-2-kinase/fructose-2,6- bisphosphatase, in carbon partitioning during salt stress and salt tolerance in Rice (Oryza sativa L.)	Plant Sci.	176(3)	334-341	2009	_,_	OsF2KP2,OsF2KP1
31485	14645724	Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K.	Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses.	Plant Physiol.	133(4)	1755-67	2003	ASR1,LIP19	OsAsr1, OsASR3, ASR3, Asr3,Lip19, lip19, OsbZIP38
31486	18435825	Kazama T, Nakamura T, Watanabe M, Sugita M, Toriyama K.	Suppression mechanism of mitochondrial ORF79 accumulation by Rf1 protein in BT-type cytoplasmic male sterile rice.	Plant J.	55(4):	619-28	2008	ATP6	atp6, OsPOX1, prx3, POX1
31487	2151651	Yamaguchi-Shinozaki K, Mundy J, Chua NH.	Four tightly linked rab genes are differentially expressed in rice.	Plant Mol. Biol.	14(1)	29-39	1990	RAB16C,RAB16B,RAB16D,RAB16A	rab21, OsLEA27, rab16C,rab21, OsLEA28, OsRAB16D, OsRAB16b,rab21, OsLEA26, Rab16D, OsRab16,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
31488		Yoshiyuki Yamagata, Kazuyuki Doi, Hideshi Yasui and Atsushi Yoshimura	Identification of Mutants for Abnormal Pollen Development in Rice	Breeding Science	.57(4)	 331-337	2007	SPS8,SPS9,SPS7,GPS1,GPS10,GPS11,GPS12,GPS2,GPS4,GPS3,GPS5,GPS6,GPS7,GPS8,GPS9,SPS10,SPS1,SPS11,SPS12,SPS2,SPS3,SPS4,SPS5,SPS6	sps8,sps9,sps7,gps1,gps10,gps11,gps12,gps2,gps4,gps3,gps5,gps6,gps7,gps8,gps9,sps10,sps1,sps11,sps12,sps2,sps3,sps4,sps5,sps6
31489		Y. Yamagata, K. Doi, H. Yasui and A. Yoshimur	Linkage analysis of SPS6, SPS9 and SPS12, the sporophytic rice genes acting in pollen development.	RGN	24	14	2008	SPS6,SPS9,SPS12	sps6,sps9,sps12
31490	16668800	Bostock RM, Quatrano RS.	Regulation of Em Gene Expression in Rice : Interaction between Osmotic Stress and Abscisic Acid.	Plant Physiol.	98(4)	1356-1363	1992	EM	Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 
31491	8819309	Sun JL, Nakagawa H, Karita S, Ohmiya K, Hattori T.	Rice embryo globulins: amino-terminal amino acid sequences, cDNA cloning and expression.	Plant Cell Physiol.	37(5)	612-20.	1996	REG1,REG2	,REG-2
31492	16152656	Komatsu S, Abbasi F, Kobori E, Fujisawa Y, Kato H, Iwasaki Y.	Proteomic analysis of rice embryo: an approach for investigating Galpha protein-regulated proteins.	Proteomics	5(15)	3932-41	2005	REG2	REG-2
31493	2137613	Mundy J, Yamaguchi-Shinozaki K, Chua NH.	Nuclear proteins bind conserved elements in the abscisic acid-responsive promoter of a rice rab gene.	Proc. Natl. Acad. Sci. U.S.A.	87(4)	1406-10	1990	RAB16B,RAB16C,RAB16D,RAB16A	rab21, OsLEA28, OsRAB16D, OsRAB16b,rab21, OsLEA27, rab16C,rab21, OsLEA26, Rab16D, OsRab16,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
31495	10767423	Tsuji H, Nakazono M, Saisho D, Tsutsumi N, Hirai A.	Transcript levels of the nuclear-encoded respiratory genes in rice decrease by oxygen deprivation: evidence for involvement of calcium in expression of the alternative oxidase 1a gene.	FEBS Lett.	471(2-3)	201-4.	2000	AOX1A	Ao1-1, AOX1a, OsAOX1a, AOX 1a
31496	12036102	Saika H, Ohtsu K, Hamanaka S, Nakazono M, Tsutsumi N, Hirai A.	AOX1c, a novel rice gene for alternative oxidase; comparison with rice AOX1a and AOX1b.	Genes Genet. Syst.	77(1)	31-8.	2002	AOX1A,AOX1C,AOX1B	Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsAOX1c,AOX1b, OsAOX1b
31497	11971906	Masiero S, Imbriano C, Ravasio F, Favaro R, Pelucchi N, Gorla MS, Mantovani R, Colombo L, Kater MM.	Ternary complex formation between MADS-box transcription factors and the histone fold protein NF-YB.	J. Biol. Chem.	277(29)	26429-35.	2002	HAP3K	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
31500	19249065	Gogami,Y., Ito,K., Kamitani,Y., Matsushima,Y. and Oikawa,T.	Occurrence of D-serine in rice and characterization of rice serine racemase	Phytochemistry	70(3)	380-387	2009	_	SerR
31501	19215594	He,C., Lin,Z., McElroy,D. and Wu,R.	Identification of a rice actin2 gene regulatory region for high-level expression of transgenes in monocots	Plant Biotechnol J.	7(3)	227-239	2009	ACT2	OsACT2, Act2
31502	19207212	Horigome,A., Nagasawa,N., Ikeda,K., Ito,M., Itoh,J.I. and Nagato,Y.	Rice OPEN BEAK is a negative regulator of class 1 knox genes and a positive regulator of class B floral homeotic gene	Plant J.	58	724-36	2009	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB
31504	18943978	Jia,Y., Wang,Z., Fjellstrom,R.G., Moldenhauer,K.A., Azam,M.A., Correll,J., Lee,F.N., Xia,Y. and Rutger,J.N.	Rice Pi-ta gene Confers Resistance to the Major Pathotypes of the Rice Blast Fungus in the United States	Phytopathology	94(3)	296-301	2004	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
31505	19153255	Lee,S.K., Song,M.Y., Seo,Y.S., Kim,H.K., Ko,S., Cao,P.J., Suh,J.P., Yi,G., Roh,J.H., Lee,S., An,G., Hahn,T.R., Wang,G.L., Ronald,P. and Jeon,J.S.	Rice Pi5-Mediated Resistance to Magnaporthe oryzae Requires the Presence of Two Coiled-Coil-Nucleotide-Binding-Leucine-Rich Repeat Genes	Genetics	181(4)	1627-1638	2009	PI5,PI37,PI3	Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi37(t), Pi37,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
31506	19167778	Sahu,B.B. and Shaw,B.P.	Salt-inducible isoform of plasma membrane H+ATPase gene in rice remains constitutively expressed in natural halophyte, Suaeda maritima	J. Plant Physiol.	166(10)	1077-1089	2009	AHA3	OSA3, OsA3, osAHA3, AHA3, PAM3
31508	19000005	Wang,X., Jia,Y., Shu,Q.Y. and Wu,D.	Haplotype diversity at the Pi-ta locus in cultivated rice and its wild relatives	Phytopathology	98(12)	1305-1311	2008	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
31509	19240804	Xiao,W., Liu,H., Li,Y., Li,X., Xu,C., Long,M. and Wang,S.	A rice gene of de novo origin negatively regulates pathogen-induced defense response	PLoS One	4 (2)	E4603	2009	CHS,PAL1,CHT1,PR1A,_,_,AOS2,DR10,WRKY13	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,ICS1, OsICS1, OsICS, ICS,PAD4, OsPAD4,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsDR10,OsWRKY13
31510	19297585	Yoo,S.C., Cho,S.H., Sugimoto,H., Li,J., Kusumi,K., Koh,H.J., Iba,K. and Paek,N.C.	Rice Virescent3 and Stripe1 Encoding the Large and Small Subunits of Ribonucleotide Reductase Are Required for Chloroplast Biogenesis during Early Leaf Development	Plant Physiol.	150(1)	388-401	2009	V3,RNRL2,RNRS2,ST1	v3, RNRL1, rnrl1, RNR1, RNRL,,,st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL
31511	19290563	Zhang,Y., Wang,J., Zhang,X., Chen,J.Q., Tian,D. and Yang,S.	Genetic signature of rice domestication shown by a variety of genes	J. Mol. Evol.	68(4)	393-402	2009	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PIB,_,_,SH4	,,,,,,,,,,,PIC22,,Vatp, OsSTA154,,,,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,,,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
31512	19484258	Kim EH,Suh SC,Park BS,Shin KS,Kweon SJ,Han EJ,Park SH,Kim YS,Kim JK	Chloroplast-targeted expression of synthetic cry1Ac in transgenic rice as an alternative strategy for increased pest protection.	Planta.	230	397-405	2009		
31513	19482918	Jabnoune M,Espeout S,Mieulet D,Fizames C,Verdeil JL,Conejero G,Rodriguez-Navarro A,Sentenac H,Guiderdoni E,Abdelly C,Very AA	Diversity in expression patterns and functional properties in the rice HKT transporter family.	Plant Physiol.	150	1955-71	2009	HKT4,HKT6,HKT1	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsHKT6, OsHKT1;3, HKT1;3,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1
31514	19480680	Kim SH,Bhat PR,Cui X,Walia H,Xu J,Wanamaker S,Ismail AM,Wilson C,Close TJ	Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array.	BMC Plant Biol	9	65	2009	HKT8	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
31515	19476655	Wang H,Chai Y,Chu X,Zhao Y,Wu Y,Zhao J,Ngezahayo F,Xu C,Liu B	Molecular characterization of a rice mutator-phenotype derived from an incompatible cross-pollination reveals transgenerational mobilization of multiple transposable elements and extensive epigenetic instability.	BMC Plant Biol	9	63	2009		
31516	19474214	Huang S,Taylor NL,Whelan J,Millar AH	Refining the definition of plant mitochondrial presequences through analysis of sorting signals, N-terminal modifications, and cleavage motifs.	Plant Physiol.	150	1272-85	2009		
31517	19473328	Kawakatsu T,Yamamoto MP,Touno SM,Yasuda H,Takaiwa F	Compensation and interaction between RISBZ1 and RPBF during grain filling in rice.	Plant J.	59	908-20	2009	RISBZ1,RPBF	OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF
31518	19472976	Kim ST,Wang Y,Kang SY,Kim SG,Rakwal R,Kim YC,Kang KY	Developing rice embryo proteomics reveals essential role for embryonic proteins in regulation of seed germination.	J Proteome Res.	8	3598-605	2009		
31519	19470656	Clark SM,Di Leo R,Van Cauwenberghe OR,Mullen RT,Shelp BJ	Subcellular localization and expression of multiple tomato gamma-aminobutyrate transaminases that utilize both pyruvate and glyoxylate.	J. Exp. Bot.	60	3255-67	2009		
31520	19470589	Lin H,Wang R,Qian Q,Yan M,Meng X,Fu Z,Yan C,Jiang B,Su Z,Li J,Wang Y	DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth.	Plant Cell	21	1512-25	2009	D27	d27(d t), dt, dwf23, d27, OsD27
31521	19468840	Aoyama T,Kobayashi T,Takahashi M,Nagasaka S,Usuda K,Kakei Y,Ishimaru Y,Nakanishi H,Mori S,Nishizawa NK	OsYSL18 is a rice iron(III)-deoxymugineic acid transporter specifically expressed in reproductive organs and phloem of lamina joints.	Plant Mol. Biol.	70	681-92	2009	YSL11,YSL10,YSL7,YSL14,YSL5,YSL12,YSL16,YSL4,YSL17,YSL8,YSL3,YSL9,YSL13,YSL6,YSL1,YSL2,YSL15,YSL18	OsYSL11,OsYSL10,OsYSL7, OsYs4,OsYSL14, OsYs5,OsYSL5, OsYs9 ,OsYSL12, OsYs11 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL4, OsYs17 ,OsYSL17, OsYs18 ,OsYSL8, OsYs3 ,OsYSL3, OsYs16 ,OsYSL9, OsYs13 ,OsYSL13, OsYs12 ,OsYSL6, OsYs8 ,OsYSL1, OsYs1,OsYSL2, Os-YSL2, OsYs6 ,OsYSL15, OsYs7,OsYSL18, OsYs2 
31522	19468748	Peng H,Zhang Q,Li Y,Lei C,Zhai Y,Sun X,Sun D,Sun Y,Lu T	A putative leucine-rich repeat receptor kinase, OsBRR1, is involved in rice blast resistance.	Planta.	230	377-85	2009		
31523	19466605	Koo SC,Choi MS,Chun HJ,Shin DB,Park BS,Kim YH,Park HM,Seo HS,Song JT,Kang KY,Yun DJ,Chung WS,Cho MJ,Kim MC	The calmodulin-binding transcription factor OsCBT suppresses defense responses to pathogens in rice.	Mol. Cells	27	563-70	2009		
31524	19465440	Kuwano M,Takaiwa F,Yoshida KT	Differential effects of a transgene to confer low phytic acid in caryopses located at different positions in rice panicles.	Plant Cell Physiol.	50	1387-92	2009		
31525	19457861	Guy JE,Stahl U,Lindqvist Y	Crystal structure of a class XIB phospholipase A2 (PLA2): rice (oryza sativa) isoform-2 pla2 and an octanoate complex.	J. Biol. Chem.	284	19371-9	2009		
31526	19454733	Aya K,Ueguchi-Tanaka M,Kondo M,Hamada K,Yano K,Nishimura M,Matsuoka M	Gibberellin modulates anther development in rice via the transcriptional regulation of GAMYB.	Plant Cell	21	1453-72	2009	GID2,GID1,KAR,CYP703A3,GAMYB	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,gid1, OsGID1, Thl, Os GID1,,OsCYP703A3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB
31527	19453459	Kim SR,Yang JI,Moon S,Ryu CH,An K,Kim KM,Yim J,An G	Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria.	Plant J.	59	738-49	2009	OGR1	ogr1
31528	19453457	Chung PJ,Kim YS,Jeong JS,Park SH,Nahm BH,Kim JK	The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice.	Plant J.	59	764-76	2009	HDAC1,NAC6	OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
31529	19453447	Morita R,Sato Y,Masuda Y,Nishimura M,Kusaba M	Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice.	Plant J.	59	940-952	2009	NOL,NHL1,NHL2,NHL3,NYC3,NYC1	nol, NOL1, OsNOL, OsNOL1,,,,nyc3, OsNYC3, PPH,nyc1, OsNYC1
31530	19453444	Xiao H,Tang J,Li Y,Wang W,Li X,Jin L,Xie R,Luo H,Zhao X,Meng Z,He G,Zhu L	STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ  identity in rice.	Plant J.	59	789-801	2009	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB
31531	19449811	Sookwong P,Murata K,Nakagawa K,Shibata A,Kimura T,Yamaguchi M,Kojima Y,Miyazawa T	Cross-fertilization for enhancing tocotrienol biosynthesis in rice plants and QTL analysis of their F2 progenies.	J. Agric. Food Chem.	57	4620-5	2009		
31532	19448729	Lee D,Lupotto E,Powell W	G-string slippage turns white rice red.	Genome	52	490-3	2009		
31533	19447378	Ma L,Yang C,Zeng D,Cai J,Li X,Ji Z,Xia Y,Qian Q,Bao J	Mapping QTLs for heading synchrony in a doubled haploid population of rice in two environments.	J Genet Genomics	36	297-304	2009		
31534	19439571	Kang K,Kim YS,Park S,Back K	Senescence-induced serotonin biosynthesis and its role in delaying senescence in  rice leaves.	Plant Physiol.	150	1380-93	2009	TDC1,TDC2	OsTDC, TDC2, OsTDC1,OsTDC2
31535	19434509	Akama K,Kanetou J,Shimosaki S,Kawakami K,Tsuchikura S,Takaiwa F	Seed-specific expression of truncated OsGAD2 produces GABA-enriched rice grains that influence a decrease in blood pressure in spontaneously hypertensive rats.	Transgenic Res	18(6)	865-76	2009		
31536	19430792	Qiu X,Xie W,Lian X,Zhang Q	Molecular analyses of the rice glutamate dehydrogenase gene family and their response to nitrogen and phosphorous deprivation.	Plant Cell Rep.	28	1115-26	2009		
31537	19429605	Oh SJ,Kim YS,Kwon CW,Park HK,Jeong JS,Kim JK	Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions.	Plant Physiol.	150	1368-1379	2009	ERF91,ERF3	OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
31538	19423186	Hong CY,Chao YY,Yang MY,Cho SC,Huei Kao C	Na(+) but not Cl(-) or osmotic stress is involved in NaCl-induced expression of Glutathione reductase in roots of rice seedlings.	J. Plant Physiol.	166(15)	1598-1606	2009		
31539	19420799	Oki K,Inaba N,Kitano H,Takahashi S,Fujisawa Y,Kato H,Iwasaki Y	Study of novel d1 alleles, defective mutants of the alpha subunit of heterotrimeric G-protein in rice.	Genes Genet. Syst.	84	35-42	2009		
31540	19417056	Wuriyanghan H,Zhang B,Cao WH,Ma B,Lei G,Liu YF,Wei W,Wu HJ,Chen LJ,Chen HW,Cao YR,He SJ,Zhang WK,Wang XJ,Chen SY,Zhang JS	The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice.	Plant Cell	21	1473-94	2009	ETR3,ETR2,ETR4	OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,PK3, OsPK3, OsETR4, OS-ETR4
31541	19415325	Guo X,Wu Y,Wang Y,Chen Y,Chu C	OsMSRA4.1 and OsMSRB1.1, two rice plastidial methionine sulfoxide reductases, are involved in abiotic stress responses.	Planta.	230	227-38	2009	_,_	OsMSRA4, MSRA4, OsMSRA4.1, MSRA4.1,OsMSRB1, MSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1
31542	19415284	Wu R,Guo WL,Wang XR,Wang XL,Zhuang TT,Clarke JL,Liu B	Unintended consequence of plant transformation: biolistic transformation caused transpositional activation of an endogenous retrotransposon Tos17 in rice ssp. japonica cv. Matsumae.	Plant Cell Rep.	28	1043-51	2009		
31543	19411659	Brazier-Hicks M,Evans KM,Gershater MC,Puschmann H,Steel PG,Edwards R	The C-glycosylation of flavonoids in cereals.	J. Biol. Chem.	284	17926-34	2009	_	OsCGT, CGT
31544	19410335	Fujino K,Matsuda Y,Sekiguchi H	Transcriptional activity of rice autonomous transposable element Dart.	J. Plant Physiol.	166	1537-43	2009	DART01,DART02,DART28,_	Dart01,Dart02,Dart28,
31545	19410334	Magneschi L,Kudahettige RL,Alpi A,Perata P	Expansin gene expression and anoxic coleoptile elongation in rice cultivars.	J. Plant Physiol.	166	1576-80	2009	EXPA7,EXPA1,EXPA4,EXPA2	OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
31546	19409457	Chen J,Ouyang Y,Wang L,Xie W,Zhang Q	Aspartic proteases gene family in rice: Gene structure and expression, predicted  protein features and phylogenetic relation.	Gene	442	108-18	2009		
31547	19407986	Wang J,Nakazaki T,Chen S,Chen W,Saito H,Tsukiyama T,Okumoto Y,Xu Z,Tanisaka T	Identification and characterization of the erect-pose panicle gene EP conferring  high grain yield in rice (Oryza sativa L.).	Theor. Appl. Genet.	119	85-91	2009	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
31548	19407983	Saito H,Yuan Q,Okumoto Y,Doi K,Yoshimura A,Inoue H,Teraishi M,Tsukiyama T,Tanisaka T	Multiple alleles at Early flowering 1 locus making variation in the basic vegetative growth period in rice (Oryza sativa L.).	Theor. Appl. Genet.	119	315-23	2009	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31549	19401410	Tang T,Xie H,Wang Y,Lu B,Liang J	The effect of sucrose and abscisic acid interaction on sucrose synthase and its relationship to grain filling of rice (Oryza sativa L.).	J. Exp. Bot.	60	2641-52	2009		
31550	19401269	Teerawanichpan P,Krittanai P,Chauvatcharin N,Narangajavana J	Purification and characterization of rice DNA methyltransferase.	Plant Physiol. Biochem.	47	671-80	2009	MET1A,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1,OsMET1b, OsMET1-2, MET1b, MET1
31551	19396402	Tsugama D,Liu S,Takano T	Stage- and tissue-specific expression of rice OsIsu1 gene encoding a scaffold protein for mitochondrial iron-sulfur-cluster biogenesis.	Biotechnol. Lett.	31	1305-10	2009		
31552	19395386	Senadheera P,Singh RK,Maathuis FJ	Differentially expressed membrane transporters in rice roots may contribute to cultivar dependent salt tolerance.	J. Exp. Bot.	60	2553-63	2009		
31553	19393612	Chen Q,Zhang B,Hicks LM,Wang S,Jez JM	A liquid chromatography-tandem mass spectrometry-based assay for indole-3-acetic  acid-amido synthetase.	Anal Biochem	390	149-54	2009		
31554	19392701	Yuan W,Li X,Chang Y,Wen R,Chen G,Zhang Q,Wu C	Mutation of the rice gene PAIR3 results in lack of bivalent formation in meiosis.	Plant J.	59	303-15	2009	PAIR3	
31555	19390838	Zhao J,Fu J,Li X,Xu C,Wang S	Dissection of the factors affecting development-controlled and race-specific disease resistance conferred by leucine-rich repeat receptor kinase-type R genes  in rice.	Theor. Appl. Genet.	119	231-9	2009		
31556	19390828	Koo SC,Choi MS,Chun HJ,Park HC,Kang CH,Shim SI,Chung JI,Cheong YH,Lee SY,Yun DJ,Chung WS,Cho MJ,Kim MC	Identification and characterization of alternative promoters of the rice MAP kinase gene OsBWMK1.	Mol. Cells	27	467-73	2009	BWMK1	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S
31557	19390827	Kwon SJ,Park KC,Son JH,Bureau T,Park CH,Kim NS	Sequence diversity of a domesticated transposase gene, MUG1, in Oryza species.	Mol. Cells	27	459-65	2009		
31558	19390826	Kim SJ,Lee SC,Hong SK,An K,An G,Kim SR	Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.	Mol. Cells	27	449-58	2009		
31559	19386809	Ikeda-Kawakatsu K,Yasuno N,Oikawa T,Iida S,Nagato Y,Maekawa M,Kyozuka J	Expression level of ABERRANT PANICLE ORGANIZATION1 determines rice inflorescence  form through control of cell proliferation in the meristem.	Plant Physiol.	150	736-47	2009	APO1,NDART1-0	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,nDART1-0
31560	19381642	Hu X,Zhang H,Li G,Yang Y,Zheng Z,Song F	Ectopic expression of a rice protein phosphatase 2C gene OsBIPP2C2 in tobacco improves disease resistance.	Plant Cell Rep.	28	985-95	2009	_,ERF64,ERF91	OsPP2C34, PP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c,OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3
31561	19380351	Sawada T,Francisco PB Jr,Aihara S,Utsumi Y,Yoshida M,Oyama Y,Tsuzuki M,Satoh H,Nakamura Y	Chlorella starch branching enzyme II (BEII) can complement the function of BEIIb  in rice endosperm.	Plant Cell Physiol.	50	1062-74	2009		
31562	19376836	Lee S,Chiecko JC,Kim SA,Walker EL,Lee Y,Guerinot ML,An G	Disruption of OsYSL15 leads to iron inefficiency in rice plants.	Plant Physiol.	150	786-800	2009	YSL15	OsYSL15, OsYs7
31563	19373444	Morita R,Kusaba M,Iida S,Nishio T,Nishimura M	Development of PCR markers to detect the glb1 and Lgc1 mutations for the production of low easy-to-digest protein rice varieties.	Theor. Appl. Genet.	119	125-30	2009		
31564	19372371	Wei G,Tao Y,Liu G,Chen C,Luo R,Xia H,Gan Q,Zeng H,Lu Z,Han Y,Li X,Song G,Zhai H,Peng Y,Li D,Xu H,Wei X,Cao M,Deng H,Xin Y,Fu X,Yuan L,Yu J,Zhu Z,Zhu L	A transcriptomic analysis of superhybrid rice LYP9 and its parents.	Proc. Natl. Acad. Sci. U.S.A.	106	7695-701	2009		
31565	19370321	Xu XH,Zhao HJ,Liu QL,Frank T,Engel KH,An G,Shu QY	Mutations of the multi-drug resistance-associated protein ABC transporter gene 5  result in reduction of phytic acid in rice seeds.	Theor. Appl. Genet.	119	75-83	2009	MRP13	OsABCC13, OsMRP13, OsMRP5
31566	19370320	Xie W,Chen Y,Zhou G,Wang L,Zhang C,Zhang J,Xiao J,Zhu T,Zhang Q	Single feature polymorphisms between two rice cultivars detected using a median polish method.	Theor. Appl. Genet.	119	151-64	2009		
31567	19369275	Kojima M,Kamada-Nobusada T,Komatsu H,Takei K,Kuroha T,Mizutani M,Ashikari M,Ueguchi-Tanaka M,Matsuoka M,Suzuki K,Sakakibara H	Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa.	Plant Cell Physiol.	50	1201-14	2009		
31568	19369274	Darwish E,Testerink C,Khalil M,El-Shihy O,Munnik T	Phospholipid signaling responses in salt-stressed rice leaves.	Plant Cell Physiol.	50	986-97	2009		
31569	19363683	Ding X,Hou X,Xie K,Xiong L	Genome-wide identification of BURP domain-containing genes in rice reveals a gene family with diverse structures and responses to abiotic stresses.	Planta.	230	149-63	2009	_,_,_,_,_,_,_,_,_,_,_,_,_,RA8,_,_,RAFTIN1	OsBURP01, OsBURP1,OsBURP02, OsBURP2,OsBURP04, OsBURP4,OsBURP05, OsBURP5,OsBURP06, OsBURP6,OsBURP07, OsBURP7,RD22, OsBURP03, OsBURP3,OsBURP08, OsBURP8,OsBURP09, OsBURP9,OsBURP10,OsBURP11,OsBURP12,OsBURP14,OsBURP15, BURP15,OsBURP17,OsRD22, RD22, OsBURP16, BURP16,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1
31570	19363620	Krishnamurthy P,Ranathunge K,Franke R,Prakash HS,Schreiber L,Mathew MK	The role of root apoplastic transport barriers in salt tolerance of rice (Oryza sativa L.).	Planta.	230	119-34	2009		
31571	19357984	Rai M,He C,Wu R	Comparative functional analysis of three abiotic stress-inducible promoters in transgenic rice.	Transgenic Res	18	787-99	2009		
31572	19357089	Mosquera G,Giraldo MC,Khang CH,Coughlan S,Valent B	Interaction transcriptome analysis identifies Magnaporthe oryzae BAS1-4 as Biotrophy-associated secreted proteins in rice blast disease.	Plant Cell	21	1273-90	2009		
31573	19353748	Wang C,Zhang Q,Shou HX	Identification and expression analysis of OsHsfs in rice.	J Zhejiang Univ Sci B	10	291-300	2009	HSFB1,SPL7,HSFA2E,HSFA2B,HSFA4A,HSFA5,HSFB2A,HSFA2C,HSFB4D,HSFA6,HSFB4B,HSFB4C,HSFC2B,HSFC2A,HSFC1A,HSFB2B,HSFB2C,HSFA1,HSFA9,HSFB4A,HSFA2D,HSFA3,HSFA2A,HSFA7,HSFC1B	HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1 ,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,HSfA2e, OsHsfA2e, OsHsf-12, HSF12, OsHsfA2a, HsfA2a,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, HSF5, OsHSF5,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, HSF9, OsHsfA4b, OsHSF9,HSfA5, OsHsfA5, OsHsf-06, HSF06,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, HSF6, OsHsfA6a, HsfA6a ,OsHsfB4d, HSfB4d, OsHsf-10, HSF10,HSfA6, OsHsfA6, OsHsf-17, HSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSFB4b, OsHSFB4b, OsHsf-19, rHsf12, OsHSF12, HSF12, HSF19,HSfB4c, OsHsfB4c, OsHsf-22, HSF22,HSfC2b, OsHsfC2b, OsHsf-16, HSF16,HSfC2a, OsHsfC2a, OsHsf-05, HSF05,HSfC1a, OsHsfC1a, OsHsf-02, rHsf13, HSF02, HSF13,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsHsfA1, HSFA1, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, HSF8, OsHsfA8, HsfA8 ,HSfB4a, OsHsfB4a, OsHsf-20, HSF20,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b ,HSfA3, OsHsfA3, OsHsf-07, HSF07,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsEnS-9, OsHsfA7a, HsfA7a ,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, HSF11,  rHsf11
31574	19346465	Oikawa T,Kyozuka J	Two-Step Regulation of LAX PANICLE1 Protein Accumulation in Axillary Meristem Formation in Rice.	Plant Cell	21	1095-108	2009	LAX1	lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
31575	19339508	Huang CF,Yamaji N,Nishimura M,Tajima S,Ma JF	A rice mutant sensitive to Al toxicity is defective in the specification of root  outer cell layers.	Plant Cell Physiol.	50	976-85	2009		
31576	19339499	Hou X,Xie K,Yao J,Qi Z,Xiong L	A homolog of human ski-interacting protein in rice positively regulates cell viability and stress tolerance.	Proc. Natl. Acad. Sci. U.S.A.	106	6410-5	2009	FLO6,_,_,_,SKIPB,_,_,CYP18-2,_,_,_,HOX33,_,_,_,_,_,_,_,XB15,_,_,_,_,_,_,_,_,_,_,SKIPA,_,_,_,_,_,_	SIP4,SIP24 ,SIP2,SIP32,OsSKIPb,PAKRP1, OsKRP1, SIP18 ,SIP6 ,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,SPIN6, Spin6, SIP11 ,OsHUB1, HUB1, SIP20,OsSWAP70B, SWAP70B, SIP21,Oshox33, OsHox33, OSHB3, SIP22,SIP8,SIP9,SIP10,SIP14,SIP15,SIP16,SIP17,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,SIP23,SIP26,SIP27,SIP28,SIP25,SIP29,SIP31,SIP30,SIP33,SIP34,OsSKIPa, OsSKIP, SKIP,SIP7,OsbHLH160, bHLH160, SIP19, OsSIP19,OsRFPHC-10, SIP13 ,OsARID3, ARID3, SIP5 ,SIP1, EIP5,SIP3
31577	19337737	Qiu D,Mao J,Yang X,Zeng H	Expression of an elicitor-encoding gene from Magnaporthe grisea enhances resistance against blast disease in transgenic rice.	Plant Cell Rep.	28	925-33	2009		
31578	19337211	Wang L,Yin H,Qian Q,Yang J,Huang C,Hu X,Luo D	NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice.	Cell Res	19	598-611	2009	NL1,PLA1	nl1, OsGATA15, GATA15,pla1, OsPLA1, plt1, CYP78A11
31580	19327164	Alinsug MV,Yu CW,Wu K	Phylogenetic analysis, subcellular localization, and expression patterns of RPD3/HDA1 family histone deacetylases in plants.	BMC Plant Biol	9	37	2009		
31581	19326953	Jiang L,Yang L,Zhang H,Guo J,Mazzara M,Van den Eede G,Zhang D	International collaborative study of the endogenous reference gene, sucrose phosphate synthase (SPS), used for qualitative and quantitative analysis of genetically modified rice.	J. Agric. Food Chem.	57	3525-32	2009		
31582	19326262	Han Y,Zhang W,Zhang B,Zhang S,Wang W,Ming F	One novel mitochondrial citrate synthase from Oryza sativa L. can enhance aluminum tolerance in transgenic tobacco.	Mol Biotechnol	42	299-305	2009		
31583	19324458	Zhou J,Li F,Wang JL,Ma Y,Chong K,Xu YY	Basic helix-loop-helix transcription factor from wild rice (OrbHLH2) improves tolerance to salt- and osmotic stress in Arabidopsis.	J. Plant Physiol.	166	1296-306	2009		
31584	19322663	Islam MA,Du H,Ning J,Ye H,Xiong L	Characterization of Glossy1-homologous genes in rice involved in leaf wax accumulation and drought resistance.	Plant Mol. Biol.	70	443-56	2009	_,_,_,_,_,WSL2,_,WDA1,CER1,_,_	OsGL1-11,OsGL1-9,OsGL1-10,OsGL1-2,OsGL1-8, GL1-8,OsGL1-1, WSL2,OsGL1-7, CER2, CER1, OsCER1, OsCER2,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsCER1, OsGL1-4, Os CER1,OsGL1-3,Os0053, OsGL1-6
31585	19318375	Yuan M,Chu Z,Li X,Xu C,Wang S	Pathogen-induced expressional loss of function is the key factor in race-specific bacterial resistance conferred by a recessive R gene xa13 in rice.	Plant Cell Physiol.	50	947-55	2009	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
31586	19306686	Hu LW,Cui da Y,Zang AP,Neill S,Cai WM	Auxin-regulated OsRGP1 and OsSuS are involved in gravitropic bending of rice shoot bases.	Fen Zi Xi Bao Sheng Wu Xue Bao	42	27-34	2009		
31587	19304997	Greenup A,Peacock WJ,Dennis ES,Trevaskis B	The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals.	Ann Bot (Lond)	103	1165-72	2009		
31588	19304938	Zhang GH,Xu Q,Zhu XD,Qian Q,Xue HW	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development.	Plant Cell	21	719-35	2009	4CL4,_,RL9,_,_	Os4CL4,CP, OsSAG12-2, SAG12-2 ,rl9, SLL1/RL9, SLL1,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsLTPd8, OsLtpV.4, PI
31589	19302973	Li J,Xie Y,Dai A,Liu L,Li Z	Root and shoot traits responses to phosphorus deficiency and QTL analysis at seedling stage using introgression lines of rice.	J Genet Genomics	36	173-83	2009		
31590	19302972	Yang Z,Gao Q,Sun C,Li W,Gu S,Xu C	Molecular evolution and functional divergence of HAK potassium transporter gene family in rice (Oryza sativa L.).	J Genet Genomics	36	161-72	2009	HAK8,HAK9,HAK12,HAK13,HAK14,HAK25,HAK21,HAK16,HAK27,HAK11,HAK17,HAK10,HAK4,HAK6,HAK5,HAK3,HAK2,HAK15,LCS,HAK18,HAK19,HAK22,HAK20,HAK23,HAK24,HAK26,HAK7	OsHAK8,OsHAK9,OsHAK12,OsHAK13,OsHAK14,OsHAK25,OsHAK21,OsHAK16,OsHAK27,OsHAK11,OsHAK17, FCO3, FCO4,OsHAK10,OsHAK4,OsHAK6, OsSTA42,OsHAK5, FCO13, OsFCO13,OsHAK3,OsHAK2,OsHAK15,OsHAK1, HAK1,OsHAK18,OsHAK19,OsHAK22,OsHAK20,OsHAK23,OsHAK24,OsHAK26,OsHAK7
31591	19293370	Jung B,Florchinger M,Kunz HH,Traub M,Wartenberg R,Jeblick W,Neuhaus HE,Mohlmann T	Uridine-ribohydrolase is a key regulator in the uridine degradation pathway of Arabidopsis.	Plant Cell	21	876-91	2009		
31592	19288292	Zhang X,Li D,Zhang H,Wang X,Zheng Z,Song F	Molecular characterization of rice OsBIANK1, encoding a plasma membrane-anchored  ankyrin repeat protein, and its inducible expression in defense responses.	Mol. Biol. Rep.	37(2)	653-60	2010		
31593	19286937	Yamaguchi T,Kuroda M,Yamakawa H,Ashizawa T,Hirayae K,Kurimoto L,Shinya T,Shibuya N	Suppression of a phospholipase D gene, OsPLDbeta1, activates defense responses and increases disease resistance in rice.	Plant Physiol.	150	308-19	2009	PLDbeta1	OsPLDbeta1
31594	19285007	Park HY,Kang IS,Han JS,Lee CH,An G,Moon YH	OsDEG10 encoding a small RNA-binding protein is involved in abiotic stress signaling.	Biochem. Biophys. Res. Commun.	380	597-602	2009		
31595	19279197	Ma Q,Dai X,Xu Y,Guo J,Liu Y,Chen N,Xiao J,Zhang D,Xu Z,Zhang X,Chong K	Enhanced tolerance to chilling stress in OsMYB3R-2 transgenic rice is mediated by alteration in cell cycle and ectopic expression of stress genes.	Plant Physiol.	150	244-56	2009	_,_,CAL1,CYCB2;2,CYCB2;1,CYCB1;1	OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm
31596	19277876	Ouyang Y,Chen J,Xie W,Wang L,Zhang Q	Comprehensive sequence and expression profile analysis of Hsp20 gene family in rice.	Plant Mol. Biol.	70	341-57	2009		
31597	19270400	Toyomasu T,Kagahara T,Hirose Y,Usui M,Abe S,Okada K,Koga J,Mitsuhashi W,Yamane H	Cloning and characterization of cDNAs encoding ent-copalyl diphosphate synthases  in wheat: insight into the evolution of rice phytoalexin biosynthetic genes.	Biosci. Biotechnol. Biochem.	73	772-5	2009		
31598	19267902	Barakat A,Bagniewska-Zadworna A,Choi A,Plakkat U,DiLoreto DS,Yellanki P,Carlson JE	The cinnamyl alcohol dehydrogenase gene family in Populus: phylogeny, organization, and expression.	BMC Plant Biol	9	26	2009		
31599	19266175	Liu T,Mao D,Zhang S,Xu C,Xing Y	Fine mapping SPP1, a QTL controlling the number of spikelets per panicle, to a BAC clone in rice (Oryza sativa).	Theor. Appl. Genet.	118	1509-17	2009		
31600	19266169	Song Y,You J,Xiong L	Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis.	Plant Mol. Biol.	70	297-309	2009	IAA1,IAA9,ARF1	OsIAA1, OsIAA4,OsIAA9, OsIAA2,OsARF1, arf1, OsARF23, ARF23
31601	19264754	Xu H,Zhang J,Zeng J,Jiang L,Liu E,Peng C,He Z,Peng X	Inducible antisense suppression of glycolate oxidase reveals its strong regulation over photosynthesis in rice.	J. Exp. Bot.	60	1799-809	2009	GLO2,GLO3,GLO6,GLO4,GLO5,GLO1	GLO2, OsGLO2,GLO3, OsGLO3,GLO6, OsGLO6,GLO5, OsGLO5, OsGLO4, ,GLO4, OsGLO4, OsGLO5,GLO1, OsGLO1
31602	19263224	Ye S,Wang L,Xie W,Wan B,Li X,Lin Y	Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa  L. ssp. indica).	Plant Mol. Biol.	70	311-25	2009	CDPK17,CDPK15,CDPK12,CDPK27,CDPK7,CDPK28,CDPK31,CDPK11,CDPK16,CDPK2,CDPK14,CDPK22,CDPK26,CDPK25,CDPK29,CDPK20,CDPK3,CDPK8,CDPK5,CDPK24,CDPK30,SPK,CDPK6,CDPK13,CDPK9,CDPK10,CDPK19,CDPK21,CDPK18,CDPK4,CDPK1	OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsCDPK15, OsCPK15,OsCDPK12, OsCPK12, CPK12,OsCDPK27, OsCPK27,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,OsCDPK28, OsCPK28,OsCDPK31, OsCPK31,OsCDPK11, OsCPK11,OsCDPK16, OsCPK16,OsCDPK2, OsCPK2,OsCDPK14, OsCPK14,OsCDPK22, OsCPK22,OsCDPK26, OsCPK26,OsCDPK25, OsCPK25,OsCDPK29, OsCPK29,OsCDPK20, OsCPK20,OsCDPK3, OsCPK3,OsCDPK8, OsCPK8,OsCDPK5, OsCPK5,OsCDPK24, OsCPK24, OsCDPK14,OsCDPK30, OsCPK30,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23,OsCDPK6, OsCPK6,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,OsCDPK9, OsCPK9, CPK9,OsCDPK10, OsCPK10, CPK10,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,OsCDPK21, OsCPK21,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK1, OsCPK1
31603	19259642	Zhou Y,Cai H,Xiao J,Li X,Zhang Q,Lian X	Over-expression of aspartate aminotransferase genes in rice resulted in altered nitrogen metabolism and increased amino acid content in seeds.	Theor. Appl. Genet.	118	1381-90	2009		
31604	19258439	Zhao Y,Hu Y,Dai M,Huang L,Zhou DX	The WUSCHEL-related homeobox gene WOX11 is required to activate shoot-borne crown root development in rice.	Plant Cell	21	736-48	2009	WOX11,RR2	OsWOX11, Os WOX11, OsWOX12A,rr2, Osrr2, OsRR2, Rra10, OsRRA10
31605	19252083	Yi M,Chi MH,Khang CH,Park SY,Kang S,Valent B,Lee YH	The ER chaperone LHS1 is involved in asexual development and rice infection by the blast fungus Magnaporthe oryzae.	Plant Cell	21	681-95	2009		
31606	19251430	Li QF,Zhang GY,Dong ZW,Yu HX,Gu MH,Sun SS,Liu QQ	Characterization of expression of the OsPUL gene encoding a pullulanase-type debranching enzyme during seed development and germination in rice.	Plant Physiol. Biochem.	47	351-8	2009		
31607	19250836	Lin CW,Lin CY,Chang CC,Lee RH,Tsai TM,Chen PY,Chi WC,Huang HJ	Early signalling pathways in rice roots under vanadate stress.	Plant Physiol. Biochem.	47	369-76	2009		
31608	19247688	Takaiwa F,Hirose S,Takagi H,Yang L,Wakasa Y	Deposition of a recombinant peptide in ER-derived protein bodies by retention with cysteine-rich prolamins in transgenic rice seed.	Planta.	229	1147-58	2009		
31609	19246394	Takahashi Y,Teshima KM,Yokoi S,Innan H,Shimamoto K	Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice.	Proc. Natl. Acad. Sci. U.S.A.	106	4555-60	2009	MADS51,GI,HD3A,SE1,EF1	OsMADS51, OsMADS65, MADS65,OsGI, Gi, Os-GI,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31610	19242671	Takai T,Ohsumi A,San-oh Y,Laza MR,Kondo M,Yamamoto T,Yano M	Detection of a quantitative trait locus controlling carbon isotope discrimination and its contribution to stomatal conductance in japonica rice.	Theor. Appl. Genet.	118	1401-10	2009		
31611	19234674	Peremarti A,Bassie L,Christou P,Capell T	Spermine facilitates recovery from drought but does not confer drought tolerance  in transgenic rice plants expressing Datura stramonium S-adenosylmethionine decarboxylase.	Plant Mol. Biol.	70	253-64	2009		
31612	19234555	Wang WY,Ding HF,Li GX,Jiang MS,Li RF,Liu X,Zhang Y,Yao FY	Delimitation of the PSH1(t) gene for rice purple leaf sheath to a 23.5 kb DNA fragment.	Genome	52	268-74	2009		
31613	19233441	Seto Y,Hamada S,Matsuura H,Matsushige M,Satou C,Takahashi K,Masuta C,Ito H,Matsui H,Nabeta K	Purification and cDNA cloning of a wound inducible glucosyltransferase active toward 12-hydroxy jasmonic acid.	Phytochemistry	70	370-9	2009	_	OsSGT, SGT, UGT74H3
31614	19232772	Kato-Noguchi H,Kobayashi K	Jasmonic acid, protein phosphatase inhibitor, metals and UV-irradiation increased momilactone A and B concentrations in the moss Hypnum plumaeforme.	J. Plant Physiol.	166	1118-22	2009		
31615	19232310	Chen T,Zhang Y,Zhao L,Zhu Z,Lin J,Zhang S,Wang C	Fine mapping and candidate gene analysis of a green-revertible albino gene gra(t) in rice.	J Genet Genomics	36	117-23	2009		
31616	19232050	Zhang N,Wang X,Chen J	Role of OsHAL3 protein, a putative 4'-phosphopantothenoylcysteine decarboxylase in rice.	Biochemistry (Mosc)	74(1)	61-67	2009	_	OsHAL3, HAL3
31617	19229638	Yang Z,Wu Y,Li Y,Ling HQ,Chu C	OsMT1a, a type 1 metallothionein, plays the pivotal role in zinc homeostasis and  drought tolerance in rice.	Plant Mol. Biol.	70	219-29	2009		
31618	19229294	Kaneda T,Taga Y,Takai R,Iwano M,Matsui H,Takayama S,Isogai A,Che FS	The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death.	EMBO J.	28	926-36	2009	IREN,HSP90,NAC4	,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068
31619	19225807	Yokotani N,Ichikawa T,Kondou Y,Matsui M,Hirochika H,Iwabuchi M,Oda K	Tolerance to various environmental stresses conferred by the salt-responsive rice gene ONAC063 in transgenic Arabidopsis.	Planta.	229	1065-75	2009	NAC63	ONAC063, ONAC63
31620	19224952	Fujii S,Yamada M,Toriyama K	Cytoplasmic male sterility-related protein kinase, OsNek3, is regulated downstream of mitochondrial protein phosphatase 2C, DCW11.	Plant Cell Physiol.	50	828-37	2009	AOX1A,_,_,_,DCW11,_,_,_,_,_	Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsNek5,OsPLIM2c,OsPLIM2a,DCW11, OsPP2C13, PP2C13, OsPP22,OsNek3, OsSTA192,OsNek1,OsNek2,OsNek4,OsNek6
31621	19224195	Xu Y,This D,Pausch RC,Vonhof WM,Coburn JR,Comstock JP,McCouch SR	Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping.	Theor. Appl. Genet.	118	1065-81	2009		
31622	19220793	Tong H,Jin Y,Liu W,Li F,Fang J,Yin Y,Qian Q,Zhu L,Chu C	DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice.	Plant J.	58	803-16	2009	BRD1,DLT,D2,BZR1,CPD1,D11	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsBZR1, Os BZR1,OsCPD1, CYP90A3, CYP90A3/OsCPD1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
31623	19219608	Tougou M,Yamagishi N,Furutani N,Kaku K,Shimizu T,Takahata Y,Sakai J,Kanematsu S,Hidaka S	The application of the mutated acetolactate synthase gene from rice as the selectable marker gene in the production of transgenic soybeans.	Plant Cell Rep.	28	769-76	2009		
31624	19214808	Kumari S,Singh P,Singla-Pareek SL,Pareek A	Heterologous expression of a salinity and developmentally regulated rice cyclophilin gene (OsCyp2) in E. coli and S. cerevisiae confers tolerance towards  multiple abiotic stresses.	Mol Biotechnol	42	195-204	2009		
31625	19214435	Shin JH,Yoshimoto K,Ohsumi Y,Jeon JS,An G	OsATG10b, an autophagosome component, is needed for cell survival against oxidative stresses in rice.	Mol. Cells	27	67-74	2009		
31626	19211695	Kim EH,Kim YS,Park SH,Koo YJ,Choi YD,Chung YY,Lee IJ,Kim JK	Methyl jasmonate reduces grain yield by mediating stress signals to alter spikelet development in rice.	Plant Physiol.	149	1751-60	2009		
31627	19208695	Zhu G,Ye N,Zhang J	Glucose-induced delay of seed germination in rice is mediated by the suppression  of ABA catabolism rather than an enhancement of ABA biosynthesis.	Plant Cell Physiol.	50	644-51	2009	ABA8OX2,NCED2,NCED1,NCED3,ABA8OX3,NCED1,NCED2	OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,OsNCED2, OsNced2, OsCCD4b, CCD4b,OsNCED1, OsCCD4a, CCD4a,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OSNCED2, OsNCED2, OsNCED5, NCED5
31628	19205894	Li H,Yang J,Wang Y,Chen Z,Tu S,Feng L,Zhu Y,Li Y	Expression of a novel OSPGYRP (rice proline-, glycine- and tyrosine-rich protein) gene, which is involved in vesicle trafficking, enhanced cold tolerance in E. coli.	Biotechnol. Lett.	31	905-10	2009		
31629	19199048	Zhang ZL,Shin M,Zou X,Huang J,Ho TH,Shen QJ	A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.	Plant Mol. Biol.	70	139-51	2009		
31630	19198875	Li D,Yang C,Li X,Gan Q,Zhao X,Zhu L	Functional characterization of rice OsDof12.	Planta.	229	1159-69	2009		
31631	19192388	Liu JG,Qin QL,Zhang Z,Peng RH,Xiong AS,Chen JM,Yao QH	OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor.	BMB Rep	42	16-21	2009	HSFA2B,HSFA4A,HSFA2D	HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, HSF5, OsHSF5,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, HSF9, OsHsfA4b, OsHSF9,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b 
31632	19190097	Fujita N,Toyosawa Y,Utsumi Y,Higuchi T,Hanashiro I,Ikegami A,Akuzawa S,Yoshida M,Mori A,Inomata K,Itoh R,Miyao A,Hirochika H,Satoh H,Nakamura Y	Characterization of pullulanase (PUL)-deficient mutants of rice (Oryza sativa L.) and the function of PUL on starch biosynthesis in the developing rice endosperm.	J. Exp. Bot.	60	1009-23	2009	PUL	OsPUL, SDBE, OsPUL3, RE
31633	19187041	Picault N,Chaparro C,Piegu B,Stenger W,Formey D,Llauro C,Descombin J,Sabot F,Lasserre E,Meynard D,Guiderdoni E,Panaud O	Identification of an active LTR retrotransposon in rice.	Plant J.	58	754-65	2009	TOS17,TOS19	Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7,Tos19, Lullaby
31634	19184094	Riemann M,Bouyer D,Hisada A,Muller A,Yatou O,Weiler EW,Takano M,Furuya M,Nick P	Phytochrome A requires jasmonate for photodestruction.	Planta.	229	1035-45	2009		
31635	19183860	Chapman NH,Burt C,Nicholson P	The identification of candidate genes associated with Pch2 eyespot resistance in  wheat using cDNA-AFLP.	Theor. Appl. Genet.	118	1045-57	2009		
31636	19183299	Lee S,An G	Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice.	Plant Cell Environ.	32	408-16	2009		
31637	19181865	Slewinski TL,Meeley R,Braun DM	Sucrose transporter1 functions in phloem loading in maize leaves.	J. Exp. Bot.	60	881-92	2009		
31638	19179350	Purwestri YA,Ogaki Y,Tamaki S,Tsuji H,Shimamoto K	The 14-3-3 protein GF14c acts as a negative regulator of flowering in rice by interacting with the florigen Hd3a.	Plant Cell Physiol.	50	429-38	2009	GF14B,GF14C,GF14D,GF14G,GF14H,GF14A,GF14F,GID2,HD3A	GF14b, OsGF14b, 14-3-3b,GF14c, OsGF14c, 14-3-3c,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14g, OsGF14g, 14-3-3g,GF14h, OsGF14h, 14-3-3h,GF14a, OsGF14a, WIN2, 14-3-3a,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
31639	19179349	Srinivasan T,Kumar KR,Kirti PB	Constitutive expression of a trypsin protease inhibitor confers multiple stress tolerance in transgenic tobacco.	Plant Cell Physiol.	50	541-53	2009		
31640	19175766	Orashakova S,Lange M,Lange S,Wege S,Becker A	The CRABS CLAW ortholog from California poppy (Eschscholzia californica, Papaveraceae), EcCRC, is involved in floral meristem termination, gynoecium differentiation and ovule initiation.	Plant J.	58	682-93	2009		
31641	19161943	Wang B,Sang Y,Song J,Gao XQ,Zhang X	Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size.	J Genet Genomics	36	31-40	2009	_	OsARGOS 
31642	19161601	De Vleesschauwer D,Chernin L,Hofte MM	Differential effectiveness of Serratia plymuthica IC1270-induced systemic resistance against hemibiotrophic and necrotrophic leaf pathogens in rice.	BMC Plant Biol	9	9	2009		
31643	19157639	Wang A,Tang J,Li D,Chen C,Zhao X,Zhu L	Isolation and functional analysis of LiYAB1, a YABBY family gene, from lily (Lilium longiflorum).	J. Plant Physiol.	166	988-95	2009		
31644	19154618	Kashiwagi T,Shindoh K,Hirotsu N,Ishimaru K	Evidence for separate translocation pathways in determining cadmium accumulation  in grain and aerial plant parts in rice.	BMC Plant Biol	9	8	2009		
31645	19154227	Wang Y,Zhu S,Liu S,Jiang L,Chen L,Ren Y,Han X,Liu F,Ji S,Liu X,Wan J	The vacuolar processing enzyme OsVPE1 is required for efficient glutelin processing in rice.	Plant J.	58	606-17	2009	GLUP3	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
31646	19154200	Li S,Qian Q,Fu Z,Zeng D,Meng X,Kyozuka J,Maekawa M,Zhu X,Zhang J,Li J,Wang Y	Short panicle1 encodes a putative PTR family transporter and determines rice panicle size.	Plant J.	58	592-605	2009	SP1	sp, SP, OsNPF4.1, NPF4.1
31647	19153709	Yang Q,Lin F,Wang L,Pan Q	Identification and mapping of Pi41, a major gene conferring resistance to rice blast in the Oryza sativa subsp. indica reference cultivar, 93-11.	Theor. Appl. Genet.	118	1027-34	2009	PI41,PI24	Pi41(t), Pi41,Pi24, Pi24(t)
31648	19153708	Zhang Y,Luo L,Liu T,Xu C,Xing Y	Four rice QTL controlling number of spikelets per panicle expressed the characteristics of single Mendelian gene in near isogenic backgrounds.	Theor. Appl. Genet.	118	1035-44	2009		
31649	19152316	Ko S,Yu EY,Shin J,Yoo HH,Tanaka T,Kim WT,Cho HS,Lee W,Chung IK	Solution structure of the DNA binding domain of rice telomere binding protein RTBP1.	Biochemistry	48	827-38	2009		
31650	19060383	Ko KW,Lin F,Katsumata T,Sugai Y,Miyazaki S,Kawaide H,Okada K,Nojiri H,Yamane H	Functional identification of a rice ent-kaurene oxidase, OsKO2, using the Pichia  pastoris expression system.	Biosci. Biotechnol. Biochem.	72	3285-8	2008		
31651	19055717	Lacombe S,Nagasaki H,Santi C,Duval D,Piegu B,Bangratz M,Breitler JC,Guiderdoni E,Brugidou C,Hirsch J,Cao X,Brice C,Panaud O,Karlowski WM,Sato Y,Echeverria M	Identification of precursor transcripts for 6 novel miRNAs expands the diversity  on the genomic organisation and expression of miRNA genes in rice.	BMC Plant Biol	8	123	2008	MIR2055,miR1874,MIR1428E,MIR1425,MIR159A,miR827,miR1428.1,MIR1428D	miR2055, OsmiR2055, osa-miR2055, osa-MIR2055,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsmiR1428.1, osa-miR1428.1,miR1428d, osa-miR1428d, osa-MIR1428d
31652	19017488	Phean-o-pas S,Limpaseni T,Buaboocha T	Structure and expression analysis of the OsCam1-1 calmodulin gene from Oryza sativa L.	BMB Rep	41	771-7	2008		
31653	19014580	Kubo N,Fujimoto M,Arimura S,Hirai M,Tsutsumi N	Transfer of rice mitochondrial ribosomal protein L6 gene to the nucleus: acquisition of the 5'-untranslated region via a transposable element.	BMC Evol. Biol.	8	314	2008	_,_	OsRpl6-1,OsRpl6-2
31654	19011360	Shin SY,Kim IS,Kim YH,Park HM,Lee JY,Kang HG,Yoon HS	Scavenging reactive oxygen species by rice dehydroascorbate reductase alleviates  oxidative stresses in Escherichia coli.	Mol. Cells	26	616-20	2008		
31655	18953406	Wang L,Xu Y,Zhang C,Ma Q,Joo SH,Kim SK,Xu Z,Chong K	OsLIC, a Novel CCCH-Type Zinc Finger Protein with Transcription Activation, Mediates Rice Architecture via Brassinosteroids Signaling.	PLoS One	3	e3521	2008	 LIC,D2,D61	OsC3H46, C3H46, OsLIC,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
31656	18946700	Liu D,Lu Z,Mao Z,Liu S	Enhanced thermotolerance of E. coli by expressed OsHsp90 from rice (Oryza sativa  L.).	Curr Microbiol	58	129-33	2009		
31657	18840300	Niu X,Tang W,Huang W,Ren G,Wang Q,Luo D,Xiao Y,Yang S,Wang F,Lu BR,Gao F,Lu T,Liu Y	RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.).	BMC Plant Biol	8	100	2008	BAD1,SK2(T)(SCL, FGR)	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
31658	18811733	Lee SK,Jeon JS,Bornke F,Voll L,Cho JI,Goh CH,Jeong SW,Park YI,Kim SJ,Choi SB,Miyao A,Hirochika H,An G,Cho MH,Bhoo SH,Sonnewald U,Hahn TR	Loss of cytosolic fructose-1,6-bisphosphatase limits photosynthetic sucrose synthesis and causes severe growth retardations in rice (Oryza sativa).	Plant Cell Environ.	31	1851-63	2008		
31659	18804072	Yang W,Kong Z,Omo-Ikerodah E,Xu W,Li Q,Xue Y	Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.).	J Genet Genomics	35	531-43, S1-2	2008		
31660	18796165	Li D,Yang C,Li X,Ji G,Zhu L	Sense and antisense OsDof12 transcripts in rice.	BMC Mol Biol	9	80	2008	RDD4,DOF12OS	OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12,OsDof12os, Dof12os
31661	18779926	Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP	Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.	Biotechnol. Lett.	30	2191-8	2008	ERF28,ERF42	OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A
31662	18779180	Hu JT,Zhang J,Li YY,Fu CY,Zheng J,Chen JB,Hu Y,Li SG	[Genetic analysis and mapping of a rice white midrib mutant Oswm2]	Yi Chuan	30	1201-6	2008		
31663	18779157	Wang L,Cai H,Bai X,Li LW,Li Y,Zhu YM	[Cultivation of transgenic rice plants with OsCDPK7 gene and its salt tolerance]	Yi Chuan	30	1051-5	2008		
31664	18765925	Oda T,Hashimoto H,Kuwabara N,Hayashi K,Kojima C,Kawasaki T,Shimamoto K,Sato M,Shimizu T	Crystallographic characterization of the N-terminal domain of a plant NADPH oxidase.	Acta Crystallogr Sect F Struct Biol Cryst Commun	64	867-9	2008		
31665	18755073	Cho JH,Kim HB,Kim HS,Choi SB	Identification and characterization of a rice MCM2 homologue required for DNA replication.	BMB Rep	41	581-6	2008		
31666	18721784	Zheng B,Yang L,Mao C,Huang Y,Wu P	Comparison of QTLs for rice seedling morphology under different water supply conditions.	J Genet Genomics	35	473-84	2008		
31667	18713381	Wang YQ,Wei XL,Xu HL,Chai CL,Meng K,Zhai HL,Sun AJ,Peng YG,Wu B,Xiao GF,Zhu Z	Cell-wall invertases from rice are differentially expressed in Caryopsis during the grain filling stage.	J. Integr. Plant Biol.	50	466-74	2008		
31668	18713378	Cai C,Wang JY,Zhu YG,Shen QR,Li B,Tong YP,Li ZS	Gene structure and expression of the high-affinity nitrate transport system in rice roots.	J. Integr. Plant Biol.	50	443-51	2008		
31669	18676379	Mitani N,Yamaji N,Ma JF	Identification of maize silicon influx transporters.	Plant Cell Physiol.	50	5-12	2009		
31670	18668337	Giani S,Altana A,Campanoni P,Morello L,Breviario D	In trangenic rice, alpha- and beta-tubulin regulatory sequences control GUS amount and distribution through intron mediated enhancement and intron dependent  spatial expression.	Transgenic Res	18	151-62	2009		
31671	18666953	Sun AJ,Xu HL,Gong WK,Zhai HL,Meng K,Wang YQ,Wei XL,Xiao GF,Zhu Z	Cloning and expression analysis of rice sucrose transporter genes OsSUT2M and OsSUT5Z.	J. Integr. Plant Biol.	50	62-75	2008	SUT2,SUT5	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT5(t), OsSUT5Z, OsSUT5
31672	18603363	Jalloh MA,Chen J,Zhen F,Zhang G	Effect of different N fertilizer forms on antioxidant capacity and grain yield of rice growing under Cd stress.	J Hazard Mater	162	1081-5	2009		
31673	18594887	Kumari S,Sabharwal VP,Kushwaha HR,Sopory SK,Singla-Pareek SL,Pareek A	Transcriptome map for seedling stage specific salinity stress response indicates  a specific set of genes as candidate for saline tolerance in Oryza sativa L.	Funct Integr Genomics	9	109-23	2009		
31674	18593528	Chang-Qing Z,Shunsaku N,Shenkui L,Tetsuo T	Characterization of two plasma membrane protein 3 genes (PutPMP3) from the alkali grass, Puccinellia tenuiflora, and functional comparison of the rice homologues,  OsLti6a/b from rice.	BMB Rep	41	448-54	2008		
31675	18589810	Yang K,Fu Y,Zhang Y,Yan Y,Zhao Z,Fang R,Sun Z,Chen X	[Analysis of rice OsPLD3 and OsPLD4 genes and promoters]	Sheng Wu Gong Cheng Xue Bao	24	368-75	2008		
31676	18544156	Bienert GP,Thorsen M,Schussler MD,Nilsson HR,Wagner A,Tamas MJ,Jahn TP	A subgroup of plant aquaporins facilitate the bi-directional diffusion of As(OH)3 and Sb(OH)3 across membranes.	BMC Biol.	6	26	2008	NIP3;2,LSI6,LSI1	OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31677	18433929	Lee DG,Ahsan N,Lee SH,Lee JJ,Bahk JD,Kang KY,Lee BH	Chilling stress-induced proteomic changes in rice roots.	J. Plant Physiol.	166	1-11	2009		
31678	18422887	Li M,Singh R,Bazanova N,Milligan AS,Shirley N,Langridge P,Lopato S	Spatial and temporal expression of endosperm transfer cell-specific promoters in  transgenic rice and barley.	Plant Biotechnol J.	6	465-76	2008		
31679	18323646	Mizuno R,Itoh Y,Nishizawa Y,Kezuka Y,Suzuki K,Nonaka T,Watanabe T	Purification and characterization of a rice class I chitinase, OsChia1b, produced in Esherichia coli.	Biosci. Biotechnol. Biochem.	72	893-5	2008		
31680	18315698	Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J	Abscisic acid regulates gene expression in cortical fiber cells and silica cells  of rice shoots.	New Phytol.	178	68-79	2008	LEA3-1,BZIP46,WSI18,EM,BZIP9,BZIP62,BZIP42,TRAB1,BZIP72,CESA7,ABI5,BZIP23,BC6,BC7,VP1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2,OsbZIP62, OsABF8, OsEEL, EEL,OsbZIP42, OsABF7, ABF7, HBF1,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
31681	18304453	Lee YJ,Kim JH,Kim BG,Lim Y,Ahn JH	Characterization of flavone synthase I from rice.	BMB Rep	41	68-71	2008		
31682	18283411	Komatsu S,Jan A,Koga Y	Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice.	Amino Acids	36	137-46	2009		
31683	18282189	Kudo T,Kawai A,Yamaya T,Hayakawa T	Cellular distribution of ACT domain repeat protein 9, a nuclear localizing protein, in rice (Oryza sativa).	Physiol Plant	133	167-79	2008		
31684	18266905	Riemann M,Riemann M,Takano M	Rice JASMONATE RESISTANT 1 is involved in phytochrome and jasmonate signalling.	Plant Cell Environ.	31	783-92	2008		
31685	18257679	Wang Y,Gao M,Li Q,Wang L,Wang J,Jeon JS,Qu N,Zhang Y,He Z	OsRAR1 and OsSGT1 physically interact and function in rice basal disease resistance.	Mol. Plant Microbe Interact.	21	294-303	2008		
31686	18256497	Hayashi Y,Toyomasu T,Hirose Y,Onodera Y,Mitsuhashi W,Yamane H,Sassa T,Dairi T	Comparison of the enzymatic properties of ent-copalyl diphosphate synthases in the biosynthesis of phytoalexins and gibberellins in rice.	Biosci. Biotechnol. Biochem.	72	523-30	2008		
31687	18246316	Li A,Chen L,Ren H,Wang X,Zhang H,Huang RF	Analysis of the essential DNA region for OsEBP-89 promoter in response to methyl  jasmonic acid.	Sci. China, C, Life Sciences	51	280-5	2008		
31688	18223202	Komiya R,Ikegami A,Tamaki S,Yokoi S,Shimamoto K	Hd3a and RFT1 are essential for flowering in rice.	Development	135	767-74	2008	HD3A,RAP1B,RAP1A,RFT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
31689	18214526	Mitani N,Yamaji N,Ma JF	Characterization of substrate specificity of a rice silicon transporter, Lsi1.	Pflugers Arch	456	679-86	2008	NIP3;1,NIP1;1,LSI6,LSI1	OsNIP3;1, NIP3-1, OsNIP3.1, NIP3.1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
31690	18211919	Mizuno R,Fukamizo T,Sugiyama S,Nishizawa Y,Kezuka Y,Nonaka T,Suzuki K,Watanabe T	Role of the loop structure of the catalytic domain in rice class I chitinase.	J. Biochem.	143	487-95	2008		
31691	18183401	Roychoudhury A,Gupta B,Sengupta DN	Trans-acting factor designated OSBZ8 interacts with both typical abscisic acid responsive elements as well as abscisic acid responsive element-like sequences in the vegetative tissues of indica rice cultivars.	Plant Cell Rep.	27	779-94	2008		
31692	18071364	Zhang J,Peng Y,Guo Z	Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants.	Cell Res	18	508-21	2008		
31693	18071256	Sobajima H,Tani T,Chujo T,Okada K,Suzuki K,Mori S,Minami E,Nishiyama M,Nojiri H,Yamane H	Identification of a jasmonic acid-responsive region in the promoter of the rice 12-oxophytodienoic acid reductase 1 gene OsOPR1.	Biosci. Biotechnol. Biochem.	71	3110-5	2007	OPR1	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR
31694	18057047	Fan J,Niu X,Wang Y,Ren G,Zhuo T,Yang Y,Lu BR,Liu Y	Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa).	J. Exp. Bot.	58	3811-7	2007		
31695	18052121	Frank T,Meuleye BS,Miller A,Shu QY,Engel KH	Metabolite profiling of two low phytic acid (lpa) rice mutants.	J. Agric. Food Chem.	55	11011-9	2007		
31696	18037139	Yan C,Yan S,Zeng X,Zhang Z,Gu M	Fine mapping and isolation of Bc7(t), allelic to OsCesA4.	J Genet Genomics	34	1019-27	2007	BC7	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
31697	17986178	Cai M,Qiu D,Yuan T,Ding X,Li H,Duan L,Xu C,Li X,Wang S	Identification of novel pathogen-responsive cis-elements and their binding proteins in the promoter of OsWRKY13, a gene regulating rice disease resistance.	Plant Cell Environ.	31	86-96	2008		
31698	17960050	Liu SM,Wang ZY,Cai XL	[Preliminary screening of target genes of rice transcription factor OsBP-73]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33	456-62	2007		
31699	17916638	Hong CY,Hsu YT,Tsai YC,Kao CH	Expression of ASCORBATE PEROXIDASE 8 in roots of rice (Oryza sativa L.) seedlings in response to NaCl.	J. Exp. Bot.	58	3273-83	2007	APX2,APX5,APX3,APX8,APX6,APX7,APX4,APX1	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
31700	17914176	Heine GF,Malik V,Dias AP,Grotewold E	Expression and molecular characterization of ZmMYB-IF35 and related R2R3-MYB transcription factors.	Mol Biotechnol	37	155-64	2007		
31701	17888111	Mao C,Ding W,Wu Y,Yu J,He X,Shou H,Wu P	Overexpression of a NAC-domain protein promotes shoot branching in rice.	New Phytol.	176	288-98	2007	NAC2	OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2
31702	17806099	Katsuyama Y,Funa N,Horinouchi S	Precursor-directed biosynthesis of stilbene methyl ethers in Escherichia coli.	Biotechnol J	2	1286-93	2007		
31703	17764519	Yoshida H,Itoh J,Ohmori S,Miyoshi K,Horigome A,Uchida E,Kimizu M,Matsumura Y,Kusaba M,Satoh H,Nagato Y	superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice.	Plant Biotechnol J.	5	835-46	2007		
31704	17728297	Scofield GN,Hirose T,Aoki N,Furbank RT	Involvement of the sucrose transporter, OsSUT1, in the long-distance pathway for  assimilate transport in rice.	J. Exp. Bot.	58	3155-69	2007	SUT5,SUT2,SUT1,SUT4,SUT3	OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT1, OsSUT2,OsSUT4(t), OsSUT4,OsSUT3(t), OsSUT3, SUC3, OsSUT2
31705	17683575	Boden SA,Shadiac N,Tucker EJ,Langridge P,Able JA	Expression and functional analysis of TaASY1 during meiosis of bread wheat (Triticum aestivum).	BMC Mol Biol	8	65	2007		
31706	17676337	Liu HL,Xu YY,Xu ZH,Chong K	A rice YABBY gene, OsYABBY4, preferentially expresses in developing vascular tissue.	Dev Genes Evol	217	629-37	2007		
31707	17674779	Wu LJ,Zhang Z,Peng RH,Xiong AS,Liu JG,Fu XY,Gao F,Yao QH	[Cloning and bioinformatic analysis of the cDNA encoding a novel heat-shock factor OsHSF13 in Oryza sative L]	Fen Zi Xi Bao Sheng Wu Xue Bao	40	251-7	2007		
31708	17669266	Cho HY,Lee HJ,Kong KH	A phi class glutathione S-transferase from Oryza sativa (OsGSTF5): molecular cloning, expression and biochemical characteristics.	J. Biochem. Mol. Biol.	40	511-6	2007	GSTF5	OsGSTF5, OsGST F5
31709	17571267	Lu Z,Liu D,Liu S	Two rice cytosolic ascorbate peroxidases differentially improve salt tolerance in transgenic Arabidopsis.	Plant Cell Rep.	26	1909-17	2007		
31710	17562689	Akama K,Takaiwa F	C-terminal extension of rice glutamate decarboxylase (OsGAD2) functions as an autoinhibitory domain and overexpression of a truncated mutant results in the accumulation of extremely high levels of GABA in plant cells.	J. Exp. Bot.	58	2699-707	2007		
31711	17562293	Wang Z,Wang F,Duan R,Liu JY	Purification and physicochemical characterization of a recombinant phospholipid hydroperoxide glutathione peroxidase from Oryza sativa.	J. Biochem. Mol. Biol.	40	412-8	2007		
31712	17562286	Yao Y,Du Y,Jiang L,Liu JY	Molecular analysis and expression patterns of the 14-3-3 gene family from Oryza sativa.	J. Biochem. Mol. Biol.	40	349-57	2007	GF14G,GF14D,GF14H,GF14F,GF14A,GF14C,GID2,GF14B	GF14g, OsGF14g, 14-3-3g,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14h, OsGF14h, 14-3-3h,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14a, OsGF14a, WIN2, 14-3-3a,GF14c, OsGF14c, 14-3-3c,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14b, OsGF14b, 14-3-3b
31713	17556805	Xu QJ,Cui CR	[Genetic transformation of OSISAP1 gene to onion (Allium cepa L.) mediated by amicroprojectile bombardment]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33	188-96	2007		
31714	17556768	Yin C,Gan L,Ng D,Zhou X,Xia K	Decreased panicle-derived indole-3-acetic acid reduces gibberellin A1 level in the uppermost internode, causing panicle enclosure in male sterile rice Zhenshan  97A.	J. Exp. Bot.	58	2441-9	2007		
31715	17545250	Saio T,Kumeta H,Ogura K,Yokochi M,Asayama M,Katoh S,Katoh E,Teshima K,Inagaki F	The cooperative role of OsCnfU-1A domain I and domain II in the iron sulphur cluster transfer process as revealed by NMR.	J. Biochem.	142	113-21	2007		
31716	17541409	Horie T,Costa A,Kim TH,Han MJ,Horie R,Leung HY,Miyao A,Hirochika H,An G,Schroeder JI	Rice OsHKT2;1 transporter mediates large Na+ influx component into K+-starved roots for growth.	EMBO J.	26	3003-14	2007	HKT1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1
31717	17536181	Verma D,Singla-Pareek SL,Rajagopal D,Reddy MK,Sopory SK	Functional validation of a novel isoform of Na+/H+ antiporter from Pennisetum glaucum for enhancing salinity tolerance in rice.	J Biosci	32	621-8	2007		
31718	17516027	Fu XY,Zhang Z,Peng RH,Xiong AS,Liu JG,Wu LJ,Gao F,Zhu H,Guo ZK,Yao QH	Isolation and characterization of a novel cDNA encoding ERF/AP2-type transcription factor OsAP25 from Oryza sativa L.	Biotechnol. Lett.	29	1293-9	2007		
31719	17486123	Chen SY,Wang ZY,Cai XL	OsRRM, a Spen-like rice gene expressed specifically in the endosperm.	Cell Res	17	713-21	2007	_	OsRRM
31720	17485859	Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T	Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.	Biosci. Biotechnol. Biochem.	71	1183-91	2007	PIL15,PIL13,PIL12,PIL11,PIL16,PIL14,TOC1	OsPIL15, OsbHLH105, PIF3, OsPIF3,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7,OsPIL12, OsbHLH103, bHLH103,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,APG, OsPIL16, OsbHLH106,OsPIL14, OsbHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
31721	17470145	Jiang J,Li J,Xu Y,Han Y,Bai Y,Zhou G,Lou Y,Xu Z,Chong K	RNAi knockdown of Oryza sativa root meander curling gene led to altered root development and coiling which were mediated by jasmonic acid signalling in rice.	Plant Cell Environ.	30	690-9	2007	OPR1,_,RMC	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10,OsRMC, OsRLK, OsDUF26, DUF26
31722	17464219	You MK,Oh SI,Ok SH,Cho SK,Shin HY,Jeung JU,Shin JS	Identification of putative MAPK kinases in Oryza minuta and O. sativa responsive  to biotic stresses.	Mol. Cells	23	108-14	2007		
31723	17464198	Hwang du H,Kim ST,Kim SG,Kang KY	Comprehensive analysis of the expression of twenty-seven beta-1, 3-glucanase genes in rice (Oryza sativa L.).	Mol. Cells	23	207-14	2007		
31724	17464192	Lee JR,Jung JH,Kang JS,Kim JC,Jung IJ,Seok MS,Kim JH,Kim WY,Kim MG,Kim JY,Lim CO,Lee KO,Lee SY	Molecular and functional characterization of monocot-specific Pex5p splicing variants, using OsPex5pL and OsPex5pS from rice (Oryza sativa).	Mol. Cells	23	161-9	2007		
31725	17452999	Liu HY,Yu X,Cui DY,Sun MH,Sun WN,Tang ZC,Kwak SS,Su WA	The role of water channel proteins and nitric oxide signaling in rice seed germination.	Cell Res	17	638-49	2007		
31726	17447911	Jouannic S,Collin M,Vidal B,Verdeil JL,Tregear JW	A class I KNOX gene from the palm species Elaeis guineensis (Arecaceae) is associated with meristem function and a distinct mode of leaf dissection.	New Phytol.	174	551-68	2007		
31727	17431550	Kumeta H,Ogura K,Asayama M,Katoh S,Katoh E,Teshima K,Inagaki F	The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.	J Biomol NMR	38	161-4	2007		
31728	17253710	Kawahigashi H,Hirose S,Iwai T,Ohashi Y,Sakamoto W,Maekawa M,Ohkawa Y	Chemically induced expression of rice OSB2 under the control of the OsPR1.1 promoter confers increased anthocyanin accumulation in transgenic rice.	J. Agric. Food Chem.	55	1241-7	2007		
31729	17219102	Kim SH,Kim JY,Kim SJ,An KS,An G,Kim SR	Isolation of cold stress-responsive genes in the reproductive organs, and characterization of the OsLti6b gene from rice (Oryza sativa L.).	Plant Cell Rep.	26	1097-110	2007	_	OsLti6b, Lti6b, OsLTI6B, OsRCI2-6
31730	17172048	Chen C,Xiao H,Zhang W,Wang A,Xia Z,Li X,Zhai W,Cheng Z,Zhu L	Adapting rice anther culture to gene transformation and RNA interference.	Sci. China, C, Life Sciences	49	414-28	2006		
31731	17172047	Ming F,Lu Q,Wang W,Zhang S,Guo B,Shen D	Cloning, expression and function of phosphate transporter encoded gene in Oryza sativa L.	Sci. China, C, Life Sciences	49	409-13	2006	PT6	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1
31732	17091197	Hu TZ,Cao KM,Xia M,Wang XP	Functional characterization of a putative nitrate transporter gene promoter from  rice.	Acta Biochim. Biophys. Sin. (Shanghai)	38	795-802	2006		
31733	17080612	Tanaka N,Matsuoka M,Kitano H,Asano T,Kaku H,Komatsu S	gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack.	Plant Cell Environ.	29	619-31	2006	GID1	gid1, OsGID1, Thl, Os GID1
31734	17016673	Yu S,Zhang X,Guan Q,Takano T,Liu S	Expression of a carbonic anhydrase gene is induced by environmental stresses in rice (Oryza sativa L.).	Biotechnol. Lett.	29	89-94	2007		
31735	16957091	Sasaki C,Varum KM,Itoh Y,Tamoi M,Fukamizo T	Rice chitinases: sugar recognition specificities of the individual subsites.	Glycobiology	16	1242-50	2006		
31736	16875320	Ning J,Yuan B,Xie KB,Hu HH,Wu CQ,Xiong LZ	Isolation and identification of SA and JA inducible protein kinase gene OsSJMK1 in rice.	Acta genetica Sinica	33	625-33	2006		
31737	16807830	Werner T,Kollmer I,Bartrina I,Holst K,Schmulling T	New insights into the biology of cytokinin degradation.	Plant Biol (Stuttg)	8	371-81	2006		
31738	16807829	Nick P	Noise yields order--auxin, actin, and polar patterning.	Plant Biol (Stuttg)	8	360-70	2006		
31739	16775631	Yu X,Peng YH,Zhang MH,Shao YJ,Su WA,Tang ZC	Water relations and an expression analysis of plasma membrane intrinsic proteins  in sensitive and tolerant rice during chilling and recovery.	Cell Res	16	599-608	2006	PIP2;2,PIP2;8,PIP2;7,PIP2;3,PIP2;5,PIP2;6,PIP1;2,PIP2;4,PIP1;3,PIP1A,PIP2A	OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP2;5, PIP2-5,OsPIP2;6, PIP2-6, OsPIP2-5,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1
31740	16773042	Lian HL,Yu X,Lane D,Sun WN,Tang ZC,Su WA	Upland rice and lowland rice exhibited different PIP expression under water deficit and ABA treatment.	Cell Res	16	651-60	2006	PIP1;3,PIP2;8,PIP2;2,PIP2;7,PIP2;5,PIP1A,PIP1;2,PIP2;4,PIP2;3,PIP2;6,PIP2A	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6,OsPIP2;5, PIP2-5,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP2;6, PIP2-6, OsPIP2-5,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1
31741	16761097	Luo M,Gu SH,Zhao SH,Zhang F,Wu NH	Rice GTPase OsRacB: potential accessory factor in plant salt-stress signaling.	Acta Biochim. Biophys. Sin. (Shanghai)	38	393-402	2006		
31742	16730464	Mamun EA,Alfred S,Cantrill LC,Overall RL,Sutton BG	Effects of chilling on male gametophyte development in rice.	Cell Biol Int	30	583-91	2006	MST8,_	OsMST8, OSMST8,OSINV4, OsINV4, INV4, OsCIN3
31743	16704112	Shen S,Wang Z,Shan X,Wang H,Li L,Lin X,Long L,Weng K,Liu B,Zou G	Alterations in DNA methylation and genome structure in two rice mutant lines induced by high pressure.	Sci. China, C, Life Sciences	49	97-104	2006		
31744	16699542	Ma H,Lou Y,Lin WH,Xue HW	MORN motifs in plant PIPKs are involved in the regulation of subcellular localization and phospholipid binding.	Cell Res	16	466-78	2006		
31745	16689935	Rajanikant C,Kumbhakar M,Pal H,Rao BJ,Sainis JK	DNA strand exchange activity of rice recombinase OsDmc1 monitored by fluorescence resonance energy transfer and the role of ATP hydrolysis.	FEBS J.	273	1497-506	2006		
31746	16639503	Guglielminetti L,Morita A,Yamaguchi J,Loreti E,Perata P,Alpi A	Differential expression of two fructokinases in Oryza sativa seedlings grown under aerobic and anaerobic conditions.	J. Plant Res.	119	351-6	2006	_,_	OsFKI, OsFK2,OsFKII, OsFK1, FKII, FK1
31747	16556979	Yamaguchi T,Hayashi T,Nakayama K,Koike S	Expression analysis of genes for callose synthases and Rho-type small GTP-binding proteins that are related to callose synthesis in rice anther.	Biosci. Biotechnol. Biochem.	70	639-45	2006	RAC6,GSL8,RAC5,GSL9,RAC3,GSL4,RAC7,GSL5,GSLm,GSL1,RAC2,GSL10,RAC4,GSL3,GSL6,GSL2,GSL7,RAC1	OsRacB, RacB, OsRac6,OsGSL8, OsGSC, GSC, CRR1, OsCRR1,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsGSL9,OsRac3,OsGSL4,OSRAC7, OsRac7, ROP5, OsRop5,OsGSL5, OsSTA170,orf241, OsGSLm, OsGSLmt, GSLmt,OsGSL1,OsRAC2, OsRac2,OsGSL10,OsRAC4, OsRac4, ROP4, OsRop4,OsGSL3,OsGSL6,OsGSL2,OsGSL7,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
31748	16548068	Dai S,Li L,Chen T,Chong K,Xue Y,Wang T	Proteomic analyses of Oryza sativa mature pollen reveal novel proteins associated with pollen germination and tube growth.	Proteomics	6	2504-29	2006		
31749	16541126	Guo L,Wang ZY,Lin H,Cui WE,Chen J,Liu M,Chen ZL,Qu LJ,Gu H	Expression and functional analysis of the rice plasma-membrane intrinsic protein  gene family.	Cell Res	16	277-86	2006	PIP1;2,PIP2A,PIP2;2,PIP2;7,PIP1;3,PIP2;4,PIP2;3,PIP1A,PIP2;6	OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2;6, PIP2-6, OsPIP2-5
31750	16477129	Jia QJ,Qi XP,Wu P	[A preliminary analysis of the function of the OsRab5a gene in rice (Oryza sativa L.)]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	32	37-44	2006		
31751	16472405	Jain M,Tyagi AK,Khurana JP	Molecular characterization and differential expression of cytokinin-responsive type-A response regulators in rice (Oryza sativa).	BMC Plant Biol	6	1	2006	RR5,RR4,RR3,RR7,RR10,RR9,RR1,RR2,RR6,RR8	rr5, OsRR5, Rra4, OsRRA4,rr4, OsRR4, Rra3, OsRRA3,OSRR3, OsRR3, rr3, Rra7, OsRRA7,rr7, OsRR7, Rra5, OsRRA5,OsRR10, Rra2, OsRRA2, RR2,OsRR9, Rra1, OsRRA1, OsRR10, RR10,rr1, OsRR1, Rra9, OsRRA9,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsRR6, rr6, Rra6, OsRRA6,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13
31752	16452316	Takashima S,Abe T,Yoshida S,Kawahigashi H,Saito T,Tsuji S,Tsujimoto M	Analysis of sialyltransferase-like proteins from Oryza sativa.	J. Biochem.	139	279-87	2006		
31753	16428324	Ishibashi T,Kimura S,Sakaguchi K	A higher plant has three different types of RPA heterotrimeric complex.	J. Biochem.	139	99-104	2006	RPA1A,RPA1	OsRPA70a, OsRPA1a, RPA1a,OsRPA1, OsRPA70b, RPA70b
31754	16397782	Park JI,Hakozaki H,Endo M,Takada Y,Ito H,Uchida M,Okabe T,Watanabe M	Molecular characterization of mature pollen-specific genes encoding novel small cysteine-rich proteins in rice (Oryza sativa L.).	Plant Cell Rep.	25	466-74	2006		
31755	16290186	Yang Y,Yu X,Wu P	Comparison and evolution analysis of two rice subspecies LATERAL ORGAN BOUNDARIES domain gene family and their evolutionary characterization from Arabidopsis.	Mol. Phylogenet. Evol.	39	248-62	2006		
31756	16263700	Imin N,Kerim T,Weinman JJ,Rolfe BG	Low temperature treatment at the young microspore stage induces protein changes in rice anthers.	Mol Cell Proteomics	5	274-92	2006	_,_,_,_,_,_,_,_,_,OSC6,_,_,RCS3,_,_	OsGDCH,,,,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,OsMDAR4, OsMDHAR4,OsLTP1.1, T42, OsLtp1.1, LTP1.1,,OsPBF1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsCIA,coxVb, COX5b,rcs3,,CRO1, CRT
31757	16200395	Jain M,Kaur N,Garg R,Thakur JK,Tyagi AK,Khurana JP	Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa).	Funct Integr Genomics	6	47-59	2006	IAA25,IAA22,IAA16,IAA19,IAA15,IAA5,IAA7,IAA12,IAA31,IAA2,IAA6,IAA20,IAA9,IAA1,IAA3,IAA21,IAA4,IAA17,IAA18,IAA8,IAA10,IAA13,IAA14,IAA24,IAA11,IAA29,IAA23,IAA26,IAA27,IAA28,IAA30	OsIAA25,OsIAA22,OsIAA16,OsIAA19,OsIAA15,OsIAA5,OsIAA7,OsIAA12,OsIAA3, OsIAA31,OsIAA2,OsIAA6,OsIAA20,OsIAA9, OsIAA2,OsIAA1, OsIAA4,OsIAA3,OsIAA21,OsIAA4,OsIAA17,OsIAA18,OsIAA8,OsIAA10, OsIAA5,OsIAA13, OsIAA1, OsiIAA1,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsIAA24,OsIAA11,OsIAA29, OsEnS-141,OsIAA23,OsIAA26,OsIAA27,OsIAA28,OsIAA30
31760	16200411	Laura Morello, Mauro Bardini, Mauro Cricr?, Francesco Sala and Diego Breviario	Functional analysis of DNA sequences controlling the expression of the rice OsCDPK2 gene	Planta.	 223, no. 3	479-91	2006	CDPK19	OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2
31763		Mi-Jeong Jeong, Seong-Kon Lee, Beom-Gi Kim, Tack-Ryoun Kwon, Woo-Suk Cho, Young-Taik Park, Jin-Ohk Lee, Hawk-Bin Kwon, Myong-Ok Byun and Soo-Chul Park	A rice (Oryza sativa L.) MAP kinase gene, OsMAPK44, is involved in response to abiotic stresses [electronic resource].	Plant cell, tissue and organ culture.	 85, no. 2	151-160	2006		
31766		Baozhen Li, Weijie Xin, Shubin Sun, Qirong Shen and Guohua Xu	Physiological and Molecular Responses of Nitrogen-starved Rice Plants to Re-supply of Different Nitrogen Sources [electronic resource].	Plant and soil.	 287 (1-2)	145-159	2006		
31767		Tomoaki Sakamoto and Makoto Matsuoka	Characterization of CONSTITUTIVE PHOTOMORPHOGENESIS AND DWARFISM Homologs in Rice (Oryza sativa L.) [electronic resource].	Journal of plant growth regulation.	 25, no. 3	245	2006	CPD1,CPD2	OsCPD1, CYP90A3, CYP90A3/OsCPD1,OsCPD2, CYP90A4, CYP90A4/OsCPD2
31769		Lifeng Zhao, Shengbao Xu, Tuanyao Chai and Tai Wang 	OsAP2-1, an AP2-like gene from Oryza sativa, is required for flower development and male fertility [electronic resource].	Sexual Plant Reproduction	 19i4j	197-206	2006		
31770	17309686	Yuexing Yuan, Sihui Zhong, Qun Li, Zengrong Zhu, Yonggen Lou, Linyou Wang, Jianjun Wang, Muyang Wang, Qiaoli Li, Donglei Yang  and Zuhua He 	 Functional analysis of rice NPR1-like genes reveals that OsNPR1/NH1 is the rice orthologue conferring disease resistance with enhanced herbivore susceptibility.	Plant Biotechnol J.	5	313-324	2007	_,_,_,NH1,NH2	OsNPR5,OsNPR3, OsNH3, NPR3, NH3,OsNPR4, NPR4,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsNH2, OsNPR2, OsNPR2/NH2 
31771	17111096	Jie Chen, Weidong Zhang, Fengming Song and Zhong Zheng	 Phospholipase C/diacylglycerol kinase-mediated signalling is required for benzothiadiazole-induced oxidative burst and hypersensitive cell death in rice suspension-cultured cells.	Protoplasma.	230	13-21	2007		
31775		Jin Kong, Zhong Li, Yan-Ping Tan, Cui-Xiang Wan, Shao-Qing Li, Ying-Guo Zhu	 Different gene expression patterns of sucrose-starch metabolism during pollen maturation in cytoplasmic male-sterile and male-fertile lines of rice.	Physiologia plantarum.	130	136-147	2007		
31776	17541632	Liu W,Fu Y,Hu G,Si H,Zhu L,Wu C,Sun Z	Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.).	Planta.	226	785-95	2007		
31778		Y. Chen and D.-Q. Xu	 Changes in leaf photosynthesis of transgenic rice with silenced OsBP-73 gene.	Photosynthetica.	45	419-425	2007		
31781		Yibing Hu, Kang Chong and Tai Wang	OsRAF is an ethylene responsive and root abundant factor gene of rice.	Plant growth regulation.	54	55-61	2008		
31782	17624547	Sung Han Park, Chul Min Kim, Byoung Il Je, Su Hyun Park, Soon Ju Park, Hai Long Piao, Yuan-hu Xuan, Mi Sook Choe, Kouji Satoh, Shoshi Kikuchi, Kon Ho Lee, Young Soon Cha, Byung Ohg Ahn, Hyeon So Ji, Doh Won Yun, Myung Chul Lee, Seok-cheol Suh, Moo Young Eun and Chang-deok Han	A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.	Planta.	227	1-12	2007		
31784	17938955	Tani T,Sobajima H,Okada K,Chujo T,Arimura S,Tsutsumi N,Nishimura M,Seto H,Nojiri H,Yamane H	 Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice.	Planta.	227	517-26	2008	OPR10,OPR3,OPR6,OPR5,OPR1,OG1,OPR8,OPR9,OPR2,OPR4	OsOPR10, OsOPR12, OsOPR01-1,OsOPR3, OsOPR06-4,OsOPR6, OsOPR4, OsOPR06-1,OsOPR5, OsOPR6, OsOPR06-2,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsOPR8, OsOPR7, OsOPR02-1,OsOPR9, OsOPR01-2,OsOPR2, OsOPR06-5,OsOPR4, OsOPR10, OsOPR06-3
31785		Yukihiro Ito and Nori Kurata	Disruption of KNOX gene suppression in leaf by introducing its cDNA in rice	Plant Sci.	174(3)	357-365	2008		
31786		YanWen Feng, , Setsuko Komatsu, Toshiko Furukawa, Tomokazu Koshiba and Yoshihisa Kohno	Proteome analysis of proteins responsive to ambient and elevated ozone in rice seedlings	Agriculture, ecosystems & environment.	125	255-265	2008		
31787	18066586	Lee MO,Cho K,Kim SH,Jeong SH,Kim JA,Jung YH,Shim J,Shibato J,Rakwal R,Tamogami S,Kubo A,Agrawal GK,Jwa NS	Novel rice OsSIPK is a multiple stress responsive MAPK family member showing rhythmic expression at mRNA level.	Planta.	227	981-90	2008		
31788		Zhengge Zhu and Ray Wu	Regeneration of transgenic rice plants using high salt for selection without the need for antibiotics or herbicides	Plant Sci.	174(5)	519-523	2008		
31790		W. R. Chen, Y. Feng and Y. E. Chao 	Genomic analysis and expression pattern of OsZIP1, OsZIP3, and OsZIP4 in two rice (Oryza sativa L.) genotypes with different zinc efficiency	Russian Journal of Plant Physiology	55i3j	400-409	2008		
31791		Guillaume Rzewuski and Margret Sauter	Ethylene biosynthesis and signaling in rice	Plant Sci.	175(1-2)	32-42	2008		
31793		Wei Li, Cailin Lei, Zhijun Cheng, Yulin Jia, Dongyi Huang, Jiulin Wang, Jiankang Wang, Xin Zhang, Ning Su, Xiuping Guo, Huqu Zhaiand Jianmin Wan	Identification of SSR markers for a broad-spectrum blast resistance gene Pi20(t) for marker-assisted breeding	Molecular Breeding	22	141-149	2008	PI20	Pi20, Pi20(t)
31794		Shanyue Zhou, Wensheng Zhao, Hui Li, Zejian Guo and You-Liang Peng	Characterization of a Novel RING Finger Gene OsRFP1, which is Induced by Ethylene, Salicylic Acid and Blast Fungus Infection in Rice.	J. Phytopathology	156	396-402	2008	_	OsRZFP34, OsRFP1, RZFP34, RFP1
31795		Hu, T. Zh. 	OsLEA3, a late embryogenesis abundant protein gene from rice, confers tolerance to water deficit and salt stress to transgenic rice	Russian Journal of Plant Physiology	55(4)	530-537	2008		
31796	18510577	Ashok K. Shrawat, Rebecka T. Carroll, Mary DePauw, Gregory J. Taylor and Allen G. Good	Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression of alanine aminotransferase.	Plant Biotechnol J.	6	722-732	2008		
31797	18425430	Tingting Ning, Tingting Xie, Qingchuan Qiu, Wei Yang, Shunquan Zhou, Limei Zhou, Congyi Zheng, Yingguo Zhu and Daichang Yang 	Oral administration of recombinant human granulocyte-macrophage colony stimulating factor expressed in rice endosperm can increase leukocytes in mice.	Biotechnology letters.	30	1679-86	2008		
31798	18563580	Hyoun-Mi Seo, Yunhui Jung, Songyi Song, Yunhye Kim, Tackmin Kwon, Doh-Hoon Kim, Soon-Jae Jeung, Young-Byung Yi, Gihwan Yi, Min-Hee Nam and Jaesung Nam 	Increased expression of OsPT1, a high-affinity phosphate transporter, enhances phosphate acquisition in rice.	Biotechnology letters.	30	1833-8	2008		
31799	18686304	Sun Tae Kim, Sun Young Kang, Yiming Wang, Sang Gon Kim, Du Hyeon Hwang and Kyu Young Kang	Analysis of embryonic proteome modulation by GA and ABA from germinating rice seeds.	Proteomics	8	3577-87	2008		
31800		Scott, Robert C.	Imazethapyr Use with and without Clomazone for Weed Control in Furrow-Irrigated, Imidazolinone-Tolerant Rice.	Weed technology.	22	217-221	2008		
31801		Fu-Qiao Xua, Xiao-Rong Lia and Yong-Ling Ruan	RNAi-mediated suppression of hexokinase gene OsHXK10 in rice leads to non-dehiscent anther and reduction of pollen germination.	Plant Sci.	175(5)	674-684	2008		
31802		Hai-Jun Zhao, Qing-Long Liu, Xue-Liang Ren, Dian-Xing Wu and Qing-Yao Shu	Gene identification and allele-specific marker development for two allelic low phytic acid mutations in rice (Oryza sativa L.).	Molecular Breeding	22	603-612	2008		
31804	18437520	Xianquan Bai, Qiuyun Wang and Chengcai Chu	Excision of a selective marker in transgenic rice using a novel Cre/loxP system controlled by a floral specific promoter.	Transgenic Res	17	1035-43	2008		
31805		Bing Song Zheng, Ling Yang, Chuan Zao Mao, You Jun Huang and Ping Wu	Mapping QTLs for morphological traits under two water supply conditions at the young seedling stage in rice.	Plant Sci.	175(6)	767-776	2008		
31806		G. H. Zhu, J. J. Zhang, J. S. Chen and X. X. Peng	Characterization of a rice metallothionein type 3 gene with different expression profiles under various nitrogen forms.	Biologia plantarum.	52(4)	668-673	2008		
31807		Li-Hong Wang, Gui-Lan Duan, Paul N. Williams and Yong-Guan Zhu	Influences of phosphorus starvation on OsACR2.1 expression and arsenic metabolism in rice seedlings.	Plant and soil.	313(1-2)	129-139	2008		
31808	18545264	Yang XC, Hwa CM.	Genetic and physiological characterization of the OsCem mutant in rice: formation of connected embryos with multiple plumules or multiple radicles.	Heredity	101	239-46.	2008		
31809		Yuping Qiu and Diqiu Yu	Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis.	Environmental and experimental botany.	65	35-47	2008		
31810		Weihua Qiao, Shouhua Xiao, Liang Yu and Liu-Min Fan	Expression of a rice gene OsNOA1 re-establishes nitric oxide synthesis and stress-related gene expression for salt tolerance in Arabidopsis nitric oxide-associated 1 mutant Atnoa1.	Environmental and experimental botany.	65	90-98	2008		
31811	17111113	Zhu QH, Dennis ES, Upadhyaya NM.	Compact shoot and leafy head 1, a mutation affects leaf initiation and developmental transition in rice (Oryza sativa L).	Plant Cell Rep.	26(4)	421-7	2007	CSL1	csl1
31812	19103426	Jiang L, Guo L, Jiang H, Zeng D, Hu J, Wu L, Liu J, Gao Z, Qian Q.	Genetic analysis and fine-mapping of a dwarfing with withered leaf-tip mutant in rice.	J Genet Genomics	35(12)	715-21	2008	DWL1	
31813	19422603	Heuer S,Lu X,Chin JH,Tanaka JP,Kanamori H,Matsumoto T,De Leon T,Ulat VJ,Ismail AM,Yano M,Wissuwa M	Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure.	Plant Biotechnol J.	7	456-71	2009	_,_,_,_,_,PSTOL1,_,_	OsPupK04-1,OsPupK01,OsPupK53,OsPupK67,OsPupK05-1,Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPupK20-2,OsPupK29-1
31814	19405033	Wei Z,Hu W,Lin Q,Cheng X,Tong M,Zhu L,Chen R,He G	Understanding rice plant resistance to the Brown Planthopper (Nilaparvata lugens): a proteomic approach.	Proteomics	9	2798-808	2009		
31815	19210638	Iwamoto M,Higo K,Takano M	Circadian clock- and phytochrome-regulated Dof-like gene, Rdd1, is associated with grain size in rice.	Plant Cell Environ.	32	592-603	2009	RPBF,RDD3,RDD2,RDD1,RDD4	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsDof26, Dof26, OsDof-26,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3,OsDof2, OsDof9, Dof9, OsDof-9 ,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12
31816	19203276	Suh JP,Roh JH,Cho YC,Han SS,Kim YG,Jena KK	The pi40 gene for durable resistance to rice blast and molecular analysis of pi40-advanced backcross breeding lines.	Phytopathology	99	243-50	2009	PI9,PI40	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi40(t), Pi40, pi40, Pi-40(t), Pi-40
31817	19161350	Tian D,Yin Z	Constitutive heterologous expression of avrXa27 in rice containing the R gene Xa27 confers enhanced resistance to compatible Xanthomonas oryzae strains.	Mol. Plant Pathol.	10	29-39	2009		
31818	19159310	Lysoe E,Bone KR,Klemsdal SS	Real-time quantitative expression studies of the zearalenone biosynthetic gene cluster in Fusarium graminearum.	Phytopathology	99	176-84	2009		
31819	19001425	Ismail AM,Ella ES,Vergara GV,Mackill DJ	Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa).	Ann. Bot.	103	197-209	2009		
31820	18974101	Septiningsih EM,Pamplona AM,Sanchez DL,Neeraja CN,Vergara GV,Heuer S,Ismail AM,Mackill DJ	Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond.	Ann. Bot.	103	151-60	2009		
31821	18930897	Zhang XQ,Zou JS,Zhu HT,Li XY,Zeng RZ	[Genetic analysis and gene mapping of an early flowering and multi-ovary mutant in rice (Oryza sativa L.).]	Yi Chuan	30	1349-55	2008		
31822	18850055	Yao C,Ge L,Li W,Zhao B,Li C,Ruan K,Lin H,Jin Y	Expression and characterization of rice putative PAUSED gene.	Acta Biochim. Biophys. Sin. (Shanghai)	40	893-900	2008		
31823	18831036	Suzuki R,Shindo H,Tase A,Kikuchi Y,Shimizu M,Yamazaki T	Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.	Proteins	75	336-47	2009	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 
31824	18827181	Ueguchi-Tanaka M,Hirano K,Hasegawa Y,Kitano H,Matsuoka M	Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant.	Plant Cell	20	2437-46	2008	SLR1	slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
31825	18817453	Park CJ,Peng Y,Chen X,Dardick C,Ruan D,Bart R,Canlas PE,Ronald PC	Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity.	PLos Biol.	6	e231	2008	XB15,XA21	XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,Xa21*, Xa21, OsXA21
31826	18755262	Norton GJ,Aitkenhead MJ,Khowaja FS,Whalley WR,Price AH	A bioinformatic and transcriptomic approach to identifying positional candidate genes without fine mapping: an example using rice root-growth QTLs.	Genomics	92	344-52	2008	_,_,_,_,_,CSLE2,_,_,_	OMT8,,UGT705A3, OsUGT705A3,OsCCR15, CCR15 ,,OsCslE2, OsCSLE2 ,Vatp, OsSTA154,,OsDegp3, DEGP3, OsDeg9.1
31827	18723578	Nakashima A,Chen L,Thao NP,Fujiwara M,Wong HL,Kuwano M,Umemura K,Shirasu K,Kawasaki T,Shimamoto K	RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex.	Plant Cell	20	2265-79	2008	RACK1,_,_,_,RAC1,RBOHB,PR10A	RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsWD40-122, OsRACK1B, RACK1B,RAR1, Os RAR1, OsRAR1,OsSgt1, SGT1, OsSGT1, Os SGT1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
31828	18713442	Zhu SQ,Zhao H,Liang JS,Ji BH,Jiao DM	Relationships between phosphatidylglycerol molecular species of thylakoid membrane lipids and sensitivities to chilling-induced photoinhibition in rice.	J. Integr. Plant Biol.	50	194-202	2008		
31829	18713364	Xu JD,Zhang QF,Zhang T,Zhang HY,Xu PZ,Wang XD,Wu XJ	Phenotypic characterization, genetic analysis and gene-mapping for a brittle mutant in rice.	J. Integr. Plant Biol.	50	319-28	2008		
31830	18618285	Jha S,Tank HG,Prasad BD,Chattoo BB	Expression of Dm-AMP1 in rice confers resistance to Magnaporthe oryzae and Rhizoctonia solani.	Transgenic Res	18	59-69	2009		
31831	18558385	Lu WH,Wang XZ,Zheng Q,Guan SH,Xin P,Sun YQ	Diversity and stability study on rice mutants induced in space environment.	Genomics Proteomics Bioinformatics	6	51-60	2008		
31832	18487614	Kimpara T,Aohara T,Soga K,Wakabayashi K,Hoson T,Tsumuraya Y,Kotake T	Beta-1,3:1,4-glucan synthase activity in rice seedlings under water.	Ann. Bot.	102	221-6	2008		
31833	18464639	Qiu L,Wang HB,Xiong J,Fang CX,Wu WX,He HB,Lin WX	[Regulation effect of exogenous salicylic acid on weed suppression and molecular  physiological characteristics of allelopathic rice]	Ying Yong Sheng Tai Xue Bao	19	330-6	2008		
31834	18461470	Wang X,Wang H,Li Y,Cao K,Ge X	A rice lipid transfer protein binds to plasma membrane proteinaceous sites.	Mol. Biol. Rep.	36	745-50	2009		
31835	18449577	Luo Q,Han WW,Zhou YH,Yao Y,Li ZS	The 3D structure of the defense-related rice protein Pir7b predicted by homology  modeling and ligand binding studies.	J Mol Model	14	559-69	2008		
31836	18430022	Jain M,Tyagi AK,Khurana JP	Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice.	FEBS J.	275	2845-61	2008	OSH1,HOS59,HOS66,OSH43,OSH15,OSH6,HOS58,OSKN2,OSH3,OSH45	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,,HB365, KNAT7,OsH43, H43,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsH6, HOS16,,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsH3, H3, HOS13,OSH42, OSH44, H45
31837	18426477	Diedhiou CJ,Popova OV,Dietz KJ,Golldack D	The SUI-homologous translation initiation factor eIF-1 is involved in regulation  of ion homeostasis in rice.	Plant Biol (Stuttg)	10	298-309	2008		
31838	18407058	Guo J,Wu J,Ji Q,Wang C,Luo L,Yuan Y,Wang Y,Wang J	Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.	J Genet Genomics	35	105-18	2008		
31839	18366162	Morrone D,Xu M,Fulton DB,Determan MK,Peters RJ	Increasing complexity of a diterpene synthase reaction with a single residue switch.	J Am Chem Soc	130	5400-1	2008		
31840	18349506	Zhao XH,Yang JX,Gao J,Zhou Q,Kuai BK	Analysis of probenazole-responsiveness of rice RPR1 upstream fragments.	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33	524-30	2007		
31841	18338860	Kim ST,Kim SG,Kang YH,Wang Y,Kim JY,Yi N,Kim JK,Rakwal R,Koh HJ,Kang KY	Proteomics analysis of rice lesion mimic mutant (spl1) reveals tightly localized  probenazole-induced protein (PBZ1) in cells undergoing programmed cell death.	J Proteome Res.	7	1750-60	2008		
31842	18315879	Ventelon-Debout M,Tranchant-Dubreuil C,Nguyen TT,Bangratz M,Sire C,Delseny M,Brugidou C	Rice yellow mottle virus stress responsive genes from susceptible and tolerant rice genotypes.	BMC Plant Biol	8	26	2008		
31843	18251929	Mattana M,Vannini C,Espen L,Bracale M,Genga A,Marsoni M,Iriti M,Bonazza V,Romagnoli F,Baldoni E,Coraggio I,Locatelli F	The rice Mybleu transcription factor increases tolerance to oxygen deprivation in Arabidopsis plants.	Physiol Plant	131	106-21	2007		
31844	18221561	Wang D,Guo Y,Wu C,Yang G,Li Y,Zheng C	Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.	BMC Genomics.	9	44	2008	C3H25,C3H23,C3H26,C3H27,C3H28,C3H30,C3H31,C3H34,C3H15,C3H39,C3H36,C3H4,C3H42,C3H43,C3H44,C3H45,C3H48,C3H5,C3H49,C3H51,C3H53,C3H54,C3H55,C3H56,C3H57,C3H58,C3H59,C3H6,C3H62,C3H63,C3H65,C3H66,C3H7,C3H8,C3H9,C3H33,C3H67,C3H47,C3H41,DOS,C3H22,C3H35,C3H29,C3H60 ,C3H38  ,C3H16,C3H40,C3H24,C3H21,C3H3,C3H17,C3H14,C3H50,C3H32,C3H13 ,EHD4,C3H12, LIC,C3H37,C3H11,C3H10,C3H1,C3H18,C3H19	OsC3H25,OsC3H23,OsC3H26,OsC3H27,OsC3H28,OsC3H30,OsC3H31,OsC3H34,OsC3H15, OsRFPHC-3,OsC3H39,OsC3H36,OsC3H4,OsC3H42,OsC3H43,OsC3H44,OsC3H45,OsC3H48,OsC3H5,OsC3H49,OsC3H51,OsC3H53,OsC3H54,OsC3H55,OsC3H56,OsC3H57,OsC3H58,OsC3H59,OsC3H6,OsC3H62,OsC3H63,OsC3H65,OsC3H66,OsC3H7,OsC3H8,OsC3H9,OsC3H33, OsTZF5, OsCCCH-Zn-5,OsC3H67, OsTZF4, OsCCCH-Zn-7,OsC3H47, OsCCCH-Zn-10,OsC3H41, MKRN,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsC3H22,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsC3H29, OsCCCH-Zn-9,OsC3H60, U2AF35a, U2AF35A, OsU2AF35a,OsC3H38, U2AF35B, OsU2AF35b,OsC3H16,OsC3H40,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,OsC3H21,OsC3H3,OsC3H17, OsWD40-49 ,OsC3H14,OsC3H50, OsTZF6, OsCCCH-Zn-6,OsC3H32,OsC3H13, BIP105,OsC3H20, C3H20, Ehd4,OsC3H12,OsC3H46, C3H46, OsLIC,OsC3H37, OsTZF7, OsCCCH-Zn-1,OsC3H11,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12,OsC3H1, OsEnS-1,OsC3H18,OsC3H19
31845	18208628	Tong JP,Liu XJ,Zhang SY,Li SQ,Peng XJ,Yang J,Zhu YG	Identification, genetic characterization, GA response and molecular mapping of Sdt97: a dominant mutant gene conferring semi-dwarfism in rice (Oryza sativa L.).	Genet. Res.	89	221-30	2007	_	Sdt97 
31846	18089549	Tanaka T,Antonio BA,Kikuchi S,Matsumoto T,Nagamura Y,Numa H,Sakai H,Wu J,Itoh T,Sasaki T,Aono R,Fujii Y,Habara T,Harada E,Kanno M,Kawahara Y,Kawashima H,Kubooka H,Matsuya A,Nakaoka H,Saichi N,Sanbonmatsu R,Sato Y,Shinso Y,Suzuki M,Takeda J,Tanino M,Todokoro F,Yamaguchi K,Yamamoto N,Yamasaki C,Imanishi T,Okido T,Tada M,Ikeo K,Tateno Y,Gojobori T,Lin YC,Wei FJ,Hsing YI,Zhao Q,Han B,Kramer MR,McCombie RW,Lonsdale D,O'Donovan CC,Whitfield EJ,Apweiler R,Koyanagi KO,Khurana JP,Raghuvanshi S,Singh NK,Tyagi AK,Haberer G,Fujisawa M,Hosokawa S,Ito Y,Ikawa H,Shibata M,Yamamoto M,Bruskiewich RM,Hoen DR,Bureau TE,Namiki N,Ohyanagi H,Sakai Y,Nobushima S,Sakata K,Barrero RA,Sato Y,Souvorov A,Smith-White B,Tatusova T,An S,An G,OOta S,Fuks G,Fuks G,Messing J,Christie KR,Lieberherr D,Kim H,Zuccolo A,Wing RA,Nobuta K,Green PJ,Lu C,Meyers BC,Chaparro C,Piegu B,Panaud O,Echeverria M	The Rice Annotation Project Database (RAP-DB): 2008 update.	Nucleic Acids Res.	36	D1028-33	2008		
31847	18070109	Liu Q	Identification of rice TUBBY-like genes and their evolution.	FEBS J.	275	163-71	2008		
31848	17988855	Sang T,Ge S	Genetics and phylogenetics of rice domestication.	Curr Opin Genet Dev	17	533-8	2007		
31849	17907810	Caicedo AL,Williamson SH,Hernandez RD,Boyko A,Fledel-Alon A,York TL,Polato NR,Olsen KM,Nielsen R,McCouch SR,Bustamante CD,Purugganan MD	Genome-wide patterns of nucleotide polymorphism in domesticated rice.	PLoS Genet.	3	1745-56	2007		
31850	17891549	Kuraparthy V,Sood S,Gill BS	Genomic targeting and mapping of tiller inhibition gene (tin3) of wheat using ESTs and synteny with rice.	Funct Integr Genomics	8	33-42	2008		
31851	17650514	Fourquin C,Vinauger-Douard M,Chambrier P,Berne-Dedieu A,Scutt CP	Functional conservation between CRABS CLAW orthologues from widely diverged angiosperms.	Ann. Bot.	100	651-7	2007		
31852	17623303	Kang SG,Matin MN,Bae H,Natarajan S	Proteome analysis and characterization of phenotypes of lesion mimic mutant spotted leaf 6 in rice.	Proteomics	7	2447-58	2007		
31853	17622268	Kato H,Tezuka K,Feng YY,Kawamoto T,Takahashi H,Mori K,Akagi H	Structural diversity and evolution of the Rf-1 locus in the genus Oryza.	Heredity	99	516-24	2007	RF1F,RF1B,RF1E,RF1C,RF1D,RF1	Rf-1F,RF1b, Rf-1B, PPR7,Rf-1E,Rf-1C,Rf-1D,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
31854	17608495	Akiyama H,Sasaki N,Sakata K,Ohmori K,Toyota A,Kikuchi Y,Watanabe T,Furui S,Kitta K,Maitani T	Indicated detection of two unapproved transgenic rice lines contaminating vermicelli products.	J. Agric. Food Chem.	55	5942-7	2007		
31855	17601611	Zhang Q,Xu J,Li Y,Xu P,Zhang H,Wu X	Morphological, anatomical and genetic analysis for a rice mutant with abnormal hull.	J Genet Genomics	34	519-26	2007		
31856	17587382	Ballini E,Berruyer R,Morel JB,Lebrun MH,Notteghem JL,Tharreau D	Modern elite rice varieties of the 'Green Revolution' have retained a large introgression from wild rice around the Pi33 rice blast resistance locus.	New Phytol.	175	340-50	2007	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
31857	17561926	Wu J,Yu L,Li L,Hu J,Zhou J,Zhou X	Oral immunization with transgenic rice seeds expressing VP2 protein of infectious bursal disease virus induces protective immune responses in chickens.	Plant Biotechnol J.	5	570-8	2007		
31858	17548332	Guo SQ,Huang J,Jiang Y,Zhang HS	[Cloning and characterization of RZF71 encoding a C2H2-type zinc finger protein from rice]	Yi Chuan	29	607-13	2007	ZFP252	RZF71
31859	17472566	Ueguchi-Tanaka M,Nakajima M,Motoyuki A,Matsuoka M	Gibberellin receptor and its role in gibberellin signaling in plants.	Annu. Rev. Plant Biol.	58	183-98	2007		
31860	17469777	Jiang L,Xu J,Wei X,Wang S,Tang J,Zhai H,Wan J	The inheritance of early heading in the rice variety USSR5.	J Genet Genomics	34	46-55	2007	HD4,ISE1,EF1	Hd4(t), qHD4(t), qHD4,iSe1, i-Se-1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31861	17468779	Li P,Wang Y,Qian Q,Fu Z,Wang M,Zeng D,Li B,Wang X,Li J	LAZY1 controls rice shoot gravitropism through regulating polar auxin transport.	Cell Res	17	402-10	2007	LAZY1	lazy1, LA1, OsLazy1
31862	17237471	Yasuno N,Yasui Y,Takamure I,Kato K	Genetic interaction between 2 tillering genes, reduced culm number 1 (rcn1) and tillering dwarf gene d3, in rice.	J. Hered.	98	169-72	2007		
31863	17226056	Zhang H,Li S,Yi P,Wan C,Chen Z,Zhu Y	A Honglian CMS line of rice displays aberrant F0 of F0F1-ATPase.	Plant Cell Rep.	26	1065-71	2007		
31864	17208508	Perata P,Voesenek LA	Submergence tolerance in rice requires Sub1A, an ethylene-response-factor-like gene.	Trends Plant Sci.	12	43-6	2007		
31865	17138543	Chen YH,Zhao S,Liu J,Yan QQ,Xiao GY	[Genetic analysis and SSR marker of tolerance to submergence in rice]	Yi Chuan	28	1562-6	2006		
31866	17136305	Liu JG,Zhang Z,Qin QL,Peng RH,Xiong AS,Chen JM,Xu F,Zhu H,Yao QH	Isolated and characterization of a cDNA encoding ethylene-responsive element binding protein (EREBP)/AP2-type protein, RCBF2, in Oryza sativa L.	Biotechnol. Lett.	29	165-73	2007		
31867	17103003	Tobias DJ,Manoharan M,Pritsch C,Dahleen LS	Co-bombardment, integration and expression of rice chitinase and thaumatin-like protein genes in barley (Hordeum vulgare cv. Conlon).	Plant Cell Rep.	26	631-9	2007		
31868	17075175	Wang Y,Wang YF,Zhang DB	[Identification of the rice (Oryza sativa L.) mutant msp1-4 and expression analysis of its UDT1 and GAMYB genes]	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	32	527-34	2006		
31869	17056172	Nakai H,Ito T,Hayashi M,Kamiya K,Yamamoto T,Matsubara K,Kim YM,Jintanart W,Okuyama M,Mori H,Chiba S,Sano Y,Kimura A	Multiple forms of alpha-glucosidase in rice seeds (Oryza sativa L., var Nipponbare).	Biochimie	89	49-62	2007	ONG2,ONG4,ONG3,ONG1	,,,
31870	17035185	Tang D,Guo LB,Zeng DL,Zhang GH,Cheng ZK,Qian Q	[Genetic analysis of two extremely segregation distorted populations in rice (Oryza sativa L.)]	Yi Chuan	28	1259-64	2006		
31871	17002881	Zhou G,Xu Y,Li J,Yang L,Liu JY	Molecular analyses of the metallothionein gene family in rice (Oryza sativa L.).	J. Biochem. Mol. Biol.	39	595-606	2006	MTII1A,MTI3B,MTI4A,MTI4B,MTI1B,MTI3A,MT2A,MTI1A,MT2B,MTI4C	OsMT4, OsMT-II-1a, MT4, MT-II-1a,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc ,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c
31872	16939006	Sun LH,Wang CM,Su CC,Liu YQ,Zhai HQ,Wan JM	Mapping and marker-assisted selection of a brown planthopper resistance gene bph2 in rice (Oryza sativa L.).	Acta genetica Sinica	33	717-23	2006		
31873	16912923	Jin S,Cheng Y,Guan Q,Liu D,Takano T,Liu S	A metallothionein-like protein of rice (rgMT) functions in E. coli and its gene expression is induced by abiotic stresses.	Biotechnol. Lett.	28	1749-53	2006		
31874	16670901	Rasmussen TB,Donaldson IA	Investigation of the endosperm-specific sucrose synthase promoter from rice using transient expression of reporter genes in guar seed tissue.	Plant Cell Rep.	25	1035-42	2006		
31875	16553215	Su CC,Zhai HQ,Wang CM,Sun LH,Wan JM	SSR mapping of brown planthopper resistance gene Bph9 in Kaharamana, an Indica rice (Oryza sativa L.).	Acta genetica Sinica	33	262-8	2006		
31876	16540337	Pagliano C,Raviolo M,Dalla Vecchia F,Gabbrielli R,Gonnelli C,Rascio N,Barbato R,La Rocca N	Evidence for PSII donor-side damage and photoinhibition induced by cadmium treatment on rice (Oryza sativa L.).	J Photochem Photobiol B	84	70-8	2006		
31877	16511358	Moon S,Jung KH,Lee DE,Lee DY,Lee J,An K,Kang HG,An G	The rice FON1 gene controls vegetative and reproductive development by regulating shoot apical meristem size.	Mol. Cells	21	147-52	2006		
31879	17335506	Morel, J.-B.	Early and specific gene expression triggered by rice resistance gene Pi33 in response to infection by ACE1 avirulent blast fungus.	New Phytol.	174	159	2007	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
31880		R. Nandakumar , S. Babu, K. Kalpana, T. Raguchander, P. Balasubramanian and R. Samiyappan	 Agrobacterium-mediated transformation of indica rice with chitinase gene for enhanced sheath blight resistance.	Biologia plantarum.	51(1)	142-148	2007		
31881	17221232	Yuemin Huang, Benze Xiao and Lizhong Xiong	 Characterization of a stress responsive proteinase inhibitor gene with positive effect in improving drought resistance in rice.	Planta.	226	73-85	2007		
31883		H. Q. Feng, H. Y. Li, G. M. Zhou, H. G. Liang, J. G. Duan, D. J. Zhi, X. Li and J. Ma 	 Influence of irradiation on cyanide-resistant respiration and AOX1 multi-gene family expression during greening of etiolated rice seedlings.	Photosynthetica.	45	272-279	2007		
31884	17549514	Z. G. Zhao, L. Jiang, W. W. Zhang, C. Y. Yu, S. S. Zhu, K. Xie, H. Tian, L. L. Liu, H. Ikehashi and J. M. Wan	 Fine mapping of S31, a gene responsible for hybrid embryo-sac abortion in rice (Oryza sativa L.).	Planta.	226	1087-96	2007		
31885	18943579	K. Zenbayashi-Sawata, S. Fukuoka, S. Katagiri, M. Fujisawa, T. Matsumoto, T. Ashizawa and S. Koizumi	 Genetic and Physical Mapping of the Partial Resistance Gene, Pi34, to Blast in Rice.	Phytopathology	97	598-602	2007	PIQ6,PI34	Piq6(t),Pi34, RMg71, Pi24(t)
31886		Yellari Amarawathi, Rakesh Singh, Ashok K. Singh, Vijai P. Singh, Trilochan Mohapatra, Tilak R. Sharma and Nagendra K. Singh	Mapping of quantitative trait loci for basmati quality traits in rice (Oryza sativa L.)	Molecular Breeding	21	49-65	2008		
31887		Duncan A. Vaughan, Bao-Rong Lu and Norihiko Tomooka	 The evolving story of rice evolution.	Plant Sci.	174(4)	394-408	2008		
31888		Tatsuro Hirose, Graham N. Scofield and Tomio Terao	An expression analysis profile for the entire sucrose synthase gene family in rice	Plant Sci.	174(5)	534-543	2008		
31889		Xiangjin Wei a, Ling Jiang a, Junfeng Xu a, Wenwei Zhang a, Guangwen Lu a, Yongsheng Zhang a and Jianmin Wan	Genetic analyses of heading date of Japonica rice cultivars from Northeast China	Field Crops Research	107	147-154	2008	E1,SE1,EF1	E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
31890	18317774	Xianran Li, Feng Tian, Haiyan Huang, Lubin Tan, Zuofeng Zhu, Songnian Hu and Chuanqing Sun	Construction of the physical map of the gpa7 locus reveals that a large segment was deleted during rice domestication	Plant Cell Rep.	27	1087-92	2008	GPA7	gpa7
31891		Yipei Wei1, Fangyin Yao, Changxiang Zhu, Mingsong Jiang, Guangxian Li, Yunzhi Song and Fujiang Wen	Breeding of transgenic rice restorer line for multiple resistance against bacterial blight, striped stem borer and herbicide	Euphytica	163	177-184	2008		
31892		Weiwei Shi, Yi Yang, Saihua Chen and Mingliang Xu 	Discovery of a new fragrance allele and the development of functional markers for the breeding of fragrant rice varieties.	Molecular Breeding	22	185-192	2008		
31893		Timothy Liam Fitzgerald, Daniel Lex Ean Waters and Robert James Henry	The effect of salt on betaine aldehyde dehydrogenase transcript levels and 2-acetyl-1-pyrroline concentration in fragrant and non-fragrant rice (Oryza sativa).	Plant Sci.	175(4)	539-546	2008		
31894		Ping Chen, Ling Jianga Chuanyuan Yu, Wenwei Zhang, Jiankang Wang and Jianmin Wan	The Identification and Mapping of a Tiller Angle QTL on Rice Chromosome 9.	Crop Sci.	48	1799-1806	2008		
31895	18560761	Yamaji, N. 	Functions and transport of silicon in plants.	Cellular and molecular life sciences CMLS.	65	3049	2008		
31896		Sarah K. Moore and Vibha Srivastava	A bacterial haloalkane dehalogenase (dhlA) gene as conditional negative selection marker for rice callus cells.	In vitro cellular & developmental biology. Plant.	44	468-473	2008		
31897	16033806	Sakurai J, Ishikawa F, Yamaguchi T, Uemura M, Maeshima M	Identification of 33 rice aquaporin genes and analysis of their expression and function	Plant Cell Physiol.	46(9)	1568-77	2005	PIP2;5,PIP2;3,NIP1;1,PIP1;2,LSI1,SIP1;1,NIP4;1,PIP2;8,PIP2;7,PIP2;4,PIP2;6,NIP3;2,NIP3;3,PIP2;2,PIP1A,NIP1;2,NIP1;3,AM25,SIP1;2,NIP3;1,PIP1;3,PIP2A,LSI6	OsPIP2;5, PIP2-5,OsPIP2;3, PIP2-3, OsPIP2-2,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsPIP1;2, PIP1-2, OsPIP1-2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsSIP1;1, SIP1-1,OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;6, PIP2-6, OsPIP2-5,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2,OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,OsSIP1;2, OsSTA98,OsNIP3;1, NIP3-1, OsNIP3.1, NIP3.1,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
31898	19020855	Zhou L, Chen L, Jiang L, Zhang W, Liu L, Liu X, Zhao Z, Liu S, Zhang L, Wang J, Wan J.	Fine mapping of the grain chalkiness QTL qPGWC-7 in rice (Oryza sativa L.)	Theor. Appl. Genet.	118	581-590	2009		
31899	19760367	Liu L, Ma X, Liu S, Zhu C, Jiang L, Wang Y, Shen Y, Ren Y, Dong H, Chen L, Liu X, Zhao Z, Zhai H, Wan J.	Identification and characterization of a novel Waxy allele from a Yunnan rice landrace.	Plant Mol. Biol.	71	609-26	2009	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
31900		Zhu Susong,Jiang Ling,Wang Chunming,Zhai Huqu,Li Danting,Wan Jianmin,Jiang Ling	The Origin of Weedy Rice Ludao in China Deduced by Genome Wide Analysis of Its Hybrid Sterility Genes	Breeding Science	55(4)	409-414 	2005	S30 	S30-i , S30-j ,S30-n
31901		Zhao Z.G., C. M. Wang, L. Jiang, S. S. Zhu, H. Ikehashi, J. Wan	 Identification of a new hybrid sterility gene in rice (Oryza sativa L.). 	Euphytica	151	 331-337	2006	S31	S31-gi,S31-un,S31-n,S31(t)
31903	16117852	Wang YH, Liu SJ, Ji SL, Zhang WW, Wang CM, Jiang L, Wan JM.	Fine mapping and marker-assisted selection (MAS) of a low glutelin content gene in rice.	Cell Res	15(8)	622-30	2005	LGC2	
31904		Kinae, T., Hong, S.-K., Nagato, Y.	APICAL DISPLACEMENT 1 gene regulates apical-basal pattern formation in rice embryo.	Plant Sci.	168(5)	1345-1351	2005	APD1	apd1, apd1*
31905		T. KINA, M. MATSUOKA and Y. NAGATO	apical displacement 1 affects the shoot position and the number of radicles in rice embryo.	RGN	16	27-30	1999	APD1	apd1, apd1*
31906	16183700	Takashi Sazuka, Ikuko Aichi, Takayuki Kawai, Naoki Matsuo, Hidemi Kitano and Makoto Matsuoka	The Rice Mutant dwarf bamboo shoot 1: A Leaky Mutant of the NACK-type Kinesin-like Gene Can Initiate Organ Primordia but not Organ Development	Plant Cell Physiol.	46(12)	1934-1943	2005	DBS1	dbs1
31907		A. Yoshimura and Y. Nagato	A. Report of the committee on Gene Symbolizatiion, Nomenclature and Linkage Groups	RGN	24	7-9	2008	S30 ,S32,S33,LGC2,S34,S31,PSS1	S30-i , S30-j ,S30-n,S32-kn , S32-ti ,S32-n,S32(t)(=qSS2) ,S33-id,S33-j.,S33-n,,S34-id ,S34-j.,S34-n,S34(t) ,S31-gi,S31-un,S31-n,S31(t),pss1, OsPSS1
31908		Tsutomu Kuboyama, Toshiya Saito, Takashi Matsumoto, Jianzhong Wu, Hiroyuki Kanamori, Satoru Taura, Muneharu Sato, Wataru Marubashi and Katsuyuki Ichitani	Fine Mapping of HWC2, a Complementary Hybrid Weakness Gene, and Haplotype Analysis Around the Locus in Rice	RICE	2	93-103	2009	HWC2	Hwc2(L2b),L-2-b, Lr2, Hwc-2, L2b, Hwc2
31909	19693083	Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M.	The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.	Nature	460(7258)	1026-30	2009	SNK1,SNK2	SK1,SK2
31910	16147864	Huang, Ji; Wang, Jian Fei; Wang, Qi Hong; Zhang, Hong Sheng	Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid	DNA Seq.	16	130-136	2005	ZFP245	OsZFP245
31911	19135985	Zheng X,Chen B,Lu G,Han B	Overexpression of a NAC transcription factor enhances rice drought and salt tolerance.	Biochem. Biophys. Res. Commun.	379	985-9	2009	_,NAC45,LEA3-1	AWPM-19, PM19, OsPM1, OsPM19L1, PM1, PM19L1, OsAWPM-19, OsPM19,ONAC045, ONAC45,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
31912	19135278	Zou J,Liu A,Chen X,Zhou X,Gao G,Wang W,Zhang X	Expression analysis of nine rice heat shock protein genes under abiotic stresses  and ABA treatment.	J. Plant Physiol.	166	851-61	2009	HSP50.2,HSP26,HSP17.7,HSP16.9B,HSP58.7,HSP71.1,HSP80.2,HSP90,HSP23.7,HSP74.8,HSP24.1	OsHsp50.2, OsHSP50.2,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3,OsHsp58.7, OsHSP58.7, OsISC25,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsHsp80.2, OsHSP80.2,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsHsp23.7, OsHSP23.7,OsHsp74.8, OsHSP74.8,OsHsp24.1, OsHSP24.1
31913	19132872	Domingo C,Andres F,Tharreau D,Iglesias DJ,Talon M	Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice.	Mol. Plant Microbe Interact.	22	201-10	2009	LC1	OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1
31914	19123010	Shimatani Z,Takagi K,Eun CH,Maekawa M,Takahara H,Hoshino A,Qian Q,Terada R,Johzuka-Hisatomi Y,Iida S,Tsugane K	Characterization of autonomous Dart1 transposons belonging to the hAT superfamily in rice.	Mol. Genet. Genomics	281	329-44	2009	ADART1-27,NDART1-0,DART1-27	aDart1-27,nDART1-0,Dart1-27
31915	19123004	Cai H,Zhou Y,Xiao J,Li X,Zhang Q,Lian X	Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic  stress responses in rice.	Plant Cell Rep.	28	527-37	2009		
31916	19118651	Tian L,Zhang L,Zhang J,Song Y,Guo Y	Differential proteomic analysis of soluble extracellular proteins reveals the cysteine protease and cystatin involved in suspension-cultured cell proliferation in rice.	Biochim. Biophys. Acta	1794	459-67	2009		
31917	19116760	Li X,Yang Y,Yao J,Chen G,Li X,Zhang Q,Wu C	FLEXIBLE CULM 1 encoding a cinnamyl-alcohol dehydrogenase controls culm mechanical strength in rice.	Plant Mol. Biol.	69	685-97	2009	FC1	OsCAD7, fc1, CAD7
31918	19116133	Cho K,Agrawal GK,Jwa NS,Kubo A,Rakwal R	Rice OsSIPK and its orthologs: a "central master switch" for stress responses.	Biochem. Biophys. Res. Commun.	379	649-53	2009		
31919	19103168	Ke Y,Han G,He H,Li J	Differential regulation of proteins and phosphoproteins in rice under drought stress.	Biochem. Biophys. Res. Commun.	379	133-8	2009	GLP1	OsGLP1, GER1, GER5, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14
31920	19098326	Matsumoto T,Lian HL,Su WA,Tanaka D,Liu C,Iwasaki I,Kitagawa Y	Role of the aquaporin PIP1 subfamily in the chilling tolerance of rice.	Plant Cell Physiol.	50	216-29	2009	PIP1A,PIP2;2,PIP2A,PIP2;7,PIP2;3,PIP1;2,PIP2;5,PIP2;6,PIP2;4,PIP1;3,PIP2;8	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6,OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2;5, PIP2-5,OsPIP2;6, PIP2-6, OsPIP2-5,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7
31921	19089317	Goh CH,Jang S,Jung S,Kim HS,Kang HG,Park YI,Bae HJ,Lee CH,An G	Rice phot1a mutation reduces plant growth by affecting photosynthetic responses to light during early seedling growth.	Plant Mol. Biol.	69	605-19	2009		
31922	19086295	Cheung MY,Zeng NY,Tong SW,Li WY,Xue Y,Zhao KJ,Wang C,Zhang Q,Fu Y,Sun Z,Sun SS,Lam HM	Constitutive expression of a rice GTPase-activating protein induces defense responses.	New Phytol.	179	530-45	2008	_,_,PR1B,PR10A,_	GRP, Osgrp-2, OsGRP-2, GRCWP,OsYchF1, YchF1, OsPM8ATP ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsGAP1, GAP1
31923	19054337	Tang LK,Chu H,Yip WK,Yeung EC,Lo C	An anther-specific dihydroflavonol 4-reductase-like gene (DRL1) is essential for  male fertility in Arabidopsis.	New Phytol.	181	576-87	2009		
31924	19048288	Lu G,Gao C,Zheng X,Han B	Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice.	Planta.	229	605-15	2009	BZIP72	OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5
31925	19047499	Chang C,Hu Y,Sun S,Zhu Y,Ma G,Xu G	Proton pump OsA8 is linked to phosphorus uptake and translocation in rice.	J. Exp. Bot.	60	557-65	2009	AHA8,PT6	OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1
31926	19039666	Li H,Zhou SY,Zhao WS,Su SC,Peng YL	A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance.	Plant Mol. Biol.	69	337-46	2009		
31927	19036832	Zhang L,Tian LH,Zhao JF,Song Y,Zhang CJ,Guo Y	Identification of an apoplastic protein involved in the initial phase of salt stress response in rice root by two-dimensional electrophoresis.	Plant Physiol.	149	916-28	2009	RAB16A,RMC,DREB2A	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsRMC, OsRLK, OsDUF26, DUF26,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
31928	19011004	Yokosho K,Yamaji N,Ueno D,Mitani N,Ma JF	OsFRDL1 is a citrate transporter required for efficient translocation of iron in  rice.	Plant Physiol.	149	297-305	2009	_,_,_,_	OsFRDL2,OsFRDL3,OsFRDL1, FRDL1,OsFRDL4, FRDL4, MATE
31929	19010999	Cho JI,Ryoo N,Eom JS,Lee DW,Kim HB,Jeong SW,Lee YH,Kwon YK,Cho MH,Bhoo SH,Hahn TR,Park YI,Hwang I,Sheen J,Jeon JS	Role of the rice hexokinases OsHXK5 and OsHXK6 as glucose sensors.	Plant Physiol.	149	745-59	2009		
31930	19000161	Wang C,Ying S,Huang H,Li K,Wu P,Shou H	Involvement of OsSPX1 in phosphate homeostasis in rice.	Plant J.	57	895-904	2009	PT8,PI1,PAP10,LTN1,IPS1,PT6,MIR399D,PI1,PT2,MIR399J,_,_	OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsIPS2, IPS2, OsPI1,OsPAP10,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsIPS1, IPS1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,Pi1, Pi-1, Pi1-5C, Pi1-6C,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsSPX1, SPX1,OsSQD2, SQD2, SQD2.2, OsSQD2.2
31931	18988636	Li GW,Zhang MH,Cai WM,Sun WN,Su WA	Characterization of OsPIP2;7, a water channel protein in rice.	Plant Cell Physiol.	49	1851-8	2008		
31932	18986259	Takai R,Isogai A,Takayama S,Che FS	Analysis of flagellin perception mediated by flg22 receptor OsFLS2 in rice.	Mol. Plant Microbe Interact.	21	1635-42	2008	NAC4,_	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,Os-FLS2, FLS2, OsFLS2
31933	18980953	Kawakatsu T,Yamamoto MP,Hirose S,Yano M,Takaiwa F	Characterization of a new rice glutelin gene GluD-1 expressed in the starchy endosperm.	J. Exp. Bot.	59	4233-45	2008	GLUD1	GluD1, GluD-1, OsEnS-33, EnS-33
31934	18980660	Wang L,Wang Z,Xu Y,Joo SH,Kim SK,Xue Z,Xu Z,Wang Z,Chong K	OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice.	Plant J.	57	498-510	2009	D61,BRD1,GA20OX1,_,SLR1,_,_,_	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsGASR1, GASR1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,DWF1, DIM/DWF1, DIM,OsGASR2, GASR2,OsGSR1, GASR7
31935	18980647	Ai P,Sun S,Zhao J,Fan X,Xin W,Guo Q,Yu L,Shen Q,Wu P,Miller AJ,Xu G	Two rice phosphate transporters, OsPht1;2 and OsPht1;6, have different functions  and kinetic properties in uptake and translocation.	Plant J.	57	798-809	2009	PT6,PT2	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2
31936	18956194	Itabashi E,Kazama T,Toriyama K	Characterization of cytoplasmic male sterility of rice with Lead Rice cytoplasm in comparison with that with Chinsurah Boro II cytoplasm.	Plant Cell Rep.	28	233-9	2009		
31937	18952157	Singh A,Sahi C,Grover A	Chymotrypsin protease inhibitor gene family in rice: Genomic organization and evidence for the presence of a bidirectional promoter shared between two chymotrypsin protease inhibitor genes.	Gene	428	9-19	2009		
31938	18931143	Xiang Y,Tang N,Du H,Ye H,Xiong L	Characterization of OsbZIP23 as a key player of the basic leucine zipper transcription factor family for conferring abscisic acid sensitivity and salinity and drought tolerance in rice.	Plant Physiol.	148	1938-52	2008	BZIP23,_	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsABA45, ABA45, OsGDP, GDP
31939	18854333	Jang YH,Lee JH,Kim JK	Abscisic acid does not disrupt either the Arabidopsis FCA-FY interaction or its rice counterpart in vitro.	Plant Cell Physiol.	49	1898-901	2008		
31940	18826431	Boden SA,Langridge P,Spangenberg G,Able JA	TaASY1 promotes homologous chromosome interactions and is affected by deletion of Ph1.	Plant J.	57	487-97	2009		
31941	18826428	Umemura K,Satou J,Iwata M,Uozumi N,Koga J,Kawano T,Koshiba T,Anzai H,Mitomi M	Contribution of salicylic acid glucosyltransferase, OsSGT1, to chemically induced disease resistance in rice plants.	Plant J.	57	463-72	2009		
31943	18813955	Ning J,Liu S,Hu H,Xiong L	Systematic analysis of NPK1-like genes in rice reveals a stress-inducible gene cluster co-localized with a quantitative trait locus of drought resistance.	Mol. Genet. Genomics	280	535-46	2008		
31944	18810384	Peng HF,Zhang ZF,Wu B,Chen XH,Zhang GQ,Zhang ZM,Wan BH,Lu YP	Molecular mapping of two reverse photoperiod-sensitive genic male sterility genes (rpms1 and rpms2) in rice (Oryza sativa L.).	Theor. Appl. Genet.	118	77-83	2008		
31945	18790997	Matsubara K,Yamanouchi U,Wang ZX,Minobe Y,Izawa T,Yano M	Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1.	Plant Physiol.	148	1425-35	2008	EHD2/RID1	Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2
31946	18778405	Sato Y,Morita R,Katsuma S,Nishimura M,Tanaka A,Kusaba M	Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.	Plant J.	57	120-31	2009	NOL,NYC1	nol, NOL1, OsNOL, OsNOL1,nyc1, OsNYC1
31947	18777179	Gao S,Zhang H,Tian Y,Li F,Zhang Z,Lu X,Chen X,Huang R	Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity.	Plant Cell Rep.	27	1787-95	2008		
31948	18774969	Park SJ,Kim SL,Lee S,Je BI,Piao HL,Park SH,Kim CM,Ryu CH,Park SH,Xuan YH,Colasanti J,An G,Han CD	Rice Indeterminate 1 (OsId1) is necessary for the expression of Ehd1 (Early heading date 1) regardless of photoperiod.	Plant J.	56	1018-29	2008	MADS50,GI,MADS51,HD3A,EHD2/RID1,EF1,RFT1	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,OsGI, Gi, Os-GI,OsMADS51, OsMADS65, MADS65,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
31949	18765808	Sun Q,Zhou DX	Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development.	Proc. Natl. Acad. Sci. U.S.A.	105	13679-84	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,MADS24,MADS47,_,_,_,DH1	JMJ711, OsFbox149, Os_F0347,JMJ701,JMJ707,JMJ702,JMJ708,JMJ704,JMJ716,JMJ718,JMJ720,JMJ719,JMJ715,JMJ714,JMJ713,JMJ712,JMJ717,JMJ709,JMJ706, OsJMJ706,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS47, OsMDP1, MDP, MDP1,JMJ710, OsFbox611, Os_F0574,JMJ703,JMJ705,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16
31950	18762904	Li S,Tan Y,Wang K,Wan C,Zhu Y	Gametophytically alloplasmic CMS line of rice (Oryza sativa L.) with variant orfH79 haplotype corresponds to specific fertility restorer.	Theor. Appl. Genet.	117	1389-97	2008		
31951	18758744	Xu X,Chen H,Fujimura T,Kawasaki S	Fine mapping of a strong QTL of field resistance against rice blast, Pikahei-1(t), from upland rice Kahei, utilizing a novel resistance evaluation system in the greenhouse.	Theor. Appl. Genet.	117	997-1008	2008	PI63	Pi63, Pikahei-1(t), RGA3, RGA1-NB
31952	18723667	Chi YH,Moon JC,Park JH,Kim HS,Zulfugarov IS,Fanata WI,Jang HH,Lee JR,Lee YM,Kim ST,Chung YY,Lim CO,Kim JY,Yun DJ,Lee CH,Lee KO,Lee SY	Abnormal chloroplast development and growth inhibition in rice thioredoxin m knock-down plants.	Plant Physiol.	148	808-17	2008	TRXM2,TRXM5	OsTRX m2, TRX m2, OsTRXM2,OsTRX m5, Ostrxm5, OsTRXM5
31953	18701670	Han Y,Cao H,Jiang J,Xu Y,Du J,Wang X,Yuan M,Wang Z,Xu Z,Chong K	Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner.	Plant Physiol.	148	843-55	2008		
31954	18701522	Konishi S,Ebana K,Izawa T	Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.	Plant Cell Physiol.	49	1283-93	2008	RD,qSW5,RC,WX1,qSH1	Rd, DFR, OsDFR, OS-DFR,GW5, OsGW5,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,qSH1, qsh1, qSH-1
31955	18689882	Wan X,Weng J,Zhai H,Wang J,Lei C,Liu X,Guo T,Jiang L,Su N,Wan J	Quantitative trait loci (QTL) analysis for rice grain width and fine mapping of an identified QTL allele gw-5 in a recombination hotspot region on chromosome 5.	Genetics	179	2239-52	2008		
31956	18656444	Kim BK,Fujioka S,Takatsuto S,Tsujimoto M,Choe S	Castasterone is a likely end product of brassinosteroid biosynthetic pathway in rice.	Biochem. Biophys. Res. Commun.	374	614-9	2008	BRD1	brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
31957	18643988	Miki D,Shimamoto K	De novo DNA methylation induced by siRNA targeted to endogenous transcribed sequences is gene-specific and OsMet1-independent in rice.	Plant J.	56	539-49	2008		
31958	18641966	Shimizu A,Kato K,Komatsu A,Motomura K,Ikehashi H	Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.): fine QTL mapping and multivariate analysis of related traits.	Theor. Appl. Genet.	117	987-96	2008		
31959	18614714	Pedas P,Ytting CK,Fuglsang AT,Jahn TP,Schjoerring JK,Husted S	Manganese efficiency in barley: identification and characterization of the metal  ion transporter HvIRT1.	Plant Physiol.	148	455-66	2008		
31960	18575836	Kashiwagi T,Togawa E,Hirotsu N,Ishimaru K	Improvement of lodging resistance with QTLs for stem diameter in rice (Oryza sativa L.).	Theor. Appl. Genet.	117	749-57	2008		
31961	18574592	Yu D,Ranathunge K,Huang H,Pei Z,Franke R,Schreiber L,He C	Wax Crystal-Sparse Leaf1 encodes a beta-ketoacyl CoA synthase involved in biosynthesis of cuticular waxes on rice leaf.	Planta.	228	675-85	2008	WSL1	WSL1, FAE', OsFAE1', OsCER6
31962	18557835	Whiteman SA,Nuhse TS,Ashford DA,Sanders D,Maathuis FJ	A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membrane.	Plant J.	56	146-56	2008		
31963	18516586	Brooks SA,Yan W,Jackson AK,Deren CW	A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g.	Theor. Appl. Genet.	117	575-80	2008	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
31964	18449564	Kim SK,Yun CH,Lee JH,Jang YH,Park HY,Kim JK	OsCO3, a CONSTANS-LIKE gene, controls flowering by negatively regulating the expression of FT-like genes under SD conditions in rice.	Planta.	228	355-65	2008	_	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31
31965	18442365	Diedhiou CJ,Popova OV,Dietz KJ,Golldack D	The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice.	BMC Plant Biol	8	49	2008		
31966	18441339	Li D,Liu H,Zhang H,Wang X,Song F	OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress.	J. Exp. Bot.	59	2133-46	2008	_	OsRH50, OsBIRH1
31967	18413994	Kim JH,Lee YJ,Kim BG,Lim Y,Ahn JH	Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.	Mol. Cells	25	312-6	2008	F3H2,F3H3,F3H1	OsF3H-2, F3H-2, OsF3H2,OsF3H-3, F3H-3, OsF3H3,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H
31968	18392854	Mizuno H,Wu J,Katayose Y,Kanamori H,Sasaki T,Matsumoto T	Characterization of chromosome ends on the basis of the structure of TrsA subtelomeric repeats in rice (Oryza sativa L.).	Mol. Genet. Genomics	280	19-24	2008		
31969	18356966	Zuo L,Li S,Chu M,Wang S,Deng Q,Ding L,Zhang J,Wen Y,Zheng A,Li P	Phenotypic characterization, genetic analysis, and molecular mapping of a new mutant gene for male sterility in rice.	Genome	51	303-8	2008	VR1	
31970	18356944	Liu LL,Yan XY,Jiang L,Zhang WW,Wang MQ,Zhou SR,Shen Y,Shen YY,Liu SJ,Chen LM,Wang JK,Wan JM	Identification of stably expressed quantitative trait loci for cooked rice elongation in non-Basmati varieties.	Genome	51	104-12	2008		
31971	18321185	Jia Y,Martin R	Identification of a new locus, Ptr(t), required for rice blast resistance gene Pi-ta-mediated resistance.	Mol. Plant Microbe Interact.	21	396-403	2008		
31972	18317796	Jia L,Zhang B,Mao C,Li J,Wu Y,Wu P,Wu Z	OsCYT-INV1 for alkaline/neutral invertase is involved in root cell development and reproductivity in rice (Oryza sativa L.).	Planta.	228	51-9	2008	CYT-INV1	OsCYT-INV1
31973	18295371	Jiang AL,Cheng Y,Li J,Zhang W	A zinc-dependent nuclear endonuclease is responsible for DNA laddering during salt-induced programmed cell death in root tip cells of rice.	J. Plant Physiol.	165	1134-41	2008	_,_	OsNuc37,OsCyt20
31974	18193274	Hwang SH,Lee IA,Yie SW,Hwang DJ	Identification of an OsPR10a promoter region responsive to salicylic acid.	Planta.	227	1141-50	2008	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
31975	18073417	Kashkush K,Khasdan V	Large-scale survey of cytosine methylation of retrotransposons and the impact of  readout transcription from long terminal repeats on expression of adjacent rice genes.	Genetics	177	1975-85	2007		
31977	18064488	Yokotani N,Ichikawa T,Kondou Y,Matsui M,Hirochika H,Iwabuchi M,Oda K	Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis.	Planta.	227	957-67	2008		
31978	18022281	Wang J,Shi ZY,Wan XS,Shen GZ,Zhang JL	The expression pattern of a rice proteinase inhibitor gene OsPI8-1 implies its role in plant development.	J. Plant Physiol.	165	1519-29	2008		
31979	17960484	Wang H,Hao J,Chen X,Hao Z,Wang X,Lou Y,Peng Y,Guo Z	Overexpression of rice WRKY89 enhances ultraviolet B tolerance and disease resistance in rice plants.	Plant Mol. Biol.	65	799-815	2007		
31980	17960419	Ishimaru K,Togawa E,Ookawa T,Kashiwagi T,Madoka Y,Hirotsu N	New target for rice lodging resistance and its effect in a typhoon.	Planta.	227	601-9	2008		
31981	17943312	Lee YJ,Kim BG,Chong Y,Lim Y,Ahn JH	Cation dependent O-methyltransferases from rice.	Planta.	227	641-7	2008	_,_,_	ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,ROMT-17, ROMT17, CCoAOMT1
31983	17908158	Yu B,Lin Z,Li H,Li X,Li J,Wang Y,Zhang X,Zhu Z,Zhai W,Wang X,Xie D,Sun C	TAC1, a major quantitative trait locus controlling tiller angle in rice.	Plant J.	52	891-8	2007	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
31984	17895583	Morita R,Kusaba M,Iida S,Nishio T,Nishimura M	Knockout of glutelin genes which form a tandem array with a high level of homology in rice by gamma irradiation.	Genes Genet. Syst.	82	321-7	2007		
31985	17893719	Liu X,Wang S,Wang Y,Wei S	Genetic analysis and molecular mapping of a nuclear recessive male sterility gene, ms91(t), in rice.	Genome	50	796-801	2007		
31986	17884044	Wang S,Zhu QH,Guo X,Gui Y,Bao J,Helliwell C,Fan L	Molecular evolution and selection of a gene encoding two tandem microRNAs in rice.	FEBS Lett.	581	4789-93	2007	SDT,MIR156D,MIR156C,MIR156G,MIR156J,MIR156E,MIR156I,MIR156B,MIR156L,MIR156F,MIR156K	miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k
31987	17870591	Arumugam TU,Davies E,Morita EH,Abe S	Sequence, expression and tissue localization of a gene encoding a makorin RING zinc-finger protein in germinating rice (Oryza sativa L. ssp. Japonica) seeds.	Plant Physiol. Biochem.	45	767-80	2007		
31988	17764506	Ammiraju JS,Zuccolo A,Yu Y,Song X,Piegu B,Chevalier F,Walling JG,Ma J,Talag J,Brar DS,SanMiguel PJ,Jiang N,Jackson SA,Panaud O,Wing RA	Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.	Plant J.	52	342-51	2007	GRAN1,GRAN2,GRAN3,GRAN4,WALLABI,RIRE2	Gran1,Gran2,Gran3,Gran4,Wallabi,RIRE2, Osr26, Rire2, Retrosat2
31989	17710555	Bashir K,Nagasaka S,Itai RN,Kobayashi T,Takahashi M,Nakanishi H,Mori S,Nishizawa NK	Expression and enzyme activity of glutathione reductase is upregulated by Fe-deficiency in graminaceous plants.	Plant Mol. Biol.	65	277-84	2007	_,_,_	OsGR1, GR1, OsGR2,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsGR3, GR3
31990	17690841	Koh S,Lee SC,Kim MK,Koh JH,Lee S,An G,Choe S,Kim SR	T-DNA tagged knockout mutation of rice OsGSK1, an orthologue of Arabidopsis BIN2, with enhanced tolerance to various abiotic stresses.	Plant Mol. Biol.	65	453-66	2007	_,XTH23,_,EXPA4,_,DHN1,SALT,_	LIP5, lip5, ,OsXTH23, XTR3, OsXTR3,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, SKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8
31991	17651366	Tozawa Y,Teraishi M,Sasaki T,Sonoike K,Nishiyama Y,Itaya M,Miyao A,Hirochika H	The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts.	Plant J.	52	124-32	2007	YGL13,PSAA,PSAB	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,PsaA, psaA, PsAA1,PsaB, psaB, PsAA2
31992	17594063	Lee J,Park JJ,Kim SL,Yim J,An G	Mutations in the rice liguleless gene result in a complete loss of the auricle, ligule, and laminar joint.	Plant Mol. Biol.	65	487-99	2007	LG1,LG2	SPL8, OsSPL8, OsLG1,OsLG2, OsbZIP11, BZIP11
31993	17562186	Deng ZY,Wang T	OsDMC1 is required for homologous pairing in Oryza sativa.	Plant Mol. Biol.	65	31-42	2007	DMC1A,DMC1B	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B 
31994	17559517	Ogo Y,Itai RN,Nakanishi H,Kobayashi T,Takahashi M,Mori S,Nishizawa NK	The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions.	Plant J.	51	366-77	2007	_	OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
31995	17559513	Koiwai H,Tagiri A,Katoh S,Katoh E,Ichikawa H,Minami E,Nishizawa Y	RING-H2 type ubiquitin ligase EL5 is involved in root development through the maintenance of cell viability in rice.	Plant J.	51	92-104	2007	EL5	EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6
31996	17549515	Liu K,Wang L,Xu Y,Chen N,Ma Q,Li F,Chong K	Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in  rice.	Planta.	226	1007-16	2007	NCA1A,P5CS	OsCOIN, COIN, OsNCA1a, NCA1a,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
31998	17522954	Takeuchi R,Kimura S,Saotome A,Sakaguchi K	Biochemical properties of a plastidial DNA polymerase of rice.	Plant Mol. Biol.	64	601-11	2007		
31999	17522952	Hua H,Lu Q,Cai M,Xu C,Zhou DX,Li X,Zhang Q	Analysis of rice genes induced by striped stemborer (Chilo suppressalis) attack identified a promoter fragment highly specifically responsive to insect feeding.	Plant Mol. Biol.	65	519-30	2007		
32000	17502899	Smith PH,Hadfield J,Hart NJ,Koebner RM,Boyd LA	STS markers for the wheat yellow rust resistance gene Yr5 suggest a NBS-LRR-type  resistance gene cluster.	Genome	50	259-65	2007		
32001	17245561	Liu S,Cheng Y,Zhang X,Guan Q,Nishiuchi S,Hase K,Takano T	Expression of an NADP-malic enzyme gene in rice (Oryza sativa. L) is induced by environmental stresses; over-expression of the gene in Arabidopsis confers salt and osmotic stress tolerance.	Plant Mol. Biol.	64	49-58	2007	NADP-ME2	OscytME1
32003	17115300	Wang HJ,Wan AR,Hsu CM,Lee KW,Yu SM,Jauh GY	Transcriptomic adaptations in rice suspension cells under sucrose starvation.	Plant Mol. Biol.	63	441-63	2007		
32004	17036080	Liu S,Tinker NA,Mather DE	Exact word matches in rice pseudomolecules.	Genome	49	1047-51	2006		
32005	17036076	Luo H,Li Y,Yang Z,Zhong B,Xie R,Ren M,Luo D,He G	Fine mapping of a pistilloid-stamen (PS) gene on the short arm of chromosome 1 in rice.	Genome	49	1016-22	2006	SL1	sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB
32006	17032619	Ushimaru T,Nakagawa T,Fujioka Y,Daicho K,Naito M,Yamauchi Y,Nonaka H,Amako K,Yamawaki K,Murata N	Transgenic Arabidopsis plants expressing the rice dehydroascorbate reductase gene are resistant to salt stress.	J. Plant Physiol.	163	1179-84	2006		
32007	16959252	Luo YC,Zhou H,Li Y,Chen JY,Yang JH,Chen YQ,Qu LH	Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development.	FEBS Lett.	580	5111-6	2006	MIR583C,MIR156B,MIR156C,MIR159A,MIR397B,MIR528,MIR156G	miR583c, osa-miR583c, osa-MIR583c,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p
32008	16805731	Zhang YC,Gong SF,Li QH,Sang Y,Yang HQ	Functional and signaling mechanism analysis of rice CRYPTOCHROME 1.	Plant J.	46	971-83	2006		
32009	16766513	Chen F,Li Q,Sun L,He Z	The rice 14-3-3 gene family and its involvement in responses to biotic and abiotic stress.	DNA Res.	13	53-63	2006	GF14D,GF14G,GF14F,GID2,GF14H,GF14B,GF14A	GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14g, OsGF14g, 14-3-3g,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14h, OsGF14h, 14-3-3h,GF14b, OsGF14b, 14-3-3b,GF14a, OsGF14a, WIN2, 14-3-3a
32010	16755133	Kwon SJ,Lee JK,Hong SW,Park YJ,McNally KL,Kim NS	Genetic diversity and phylogenetic relationship in AA Oryza species as revealed by Rim2/Hipa CACTA transposon display.	Genes Genet. Syst.	81	93-101	2006		
32011	16713279	Lee H,Auh CK,Kim D,Lee TK,Lee S	Exogenous cytokinin treatment maintains cyclin homeostasis in rice seedlings that show changes of cyclin expression when the photoperiod is rapidly changed.	Plant Physiol. Biochem.	44	248-52	2006		
32012	16623891	Nakamura A,Umemura I,Gomi K,Hasegawa Y,Kitano H,Sazuka T,Matsuoka M	Production and characterization of auxin-insensitive rice by overexpression of a  mutagenized rice IAA protein.	Plant J.	46	297-306	2006	IAA10,IAA13,IAA31,IAA9,ARF1,IAA1	OsIAA10, OsIAA5,OsIAA13, OsIAA1, OsiIAA1,OsIAA3, OsIAA31,OsIAA9, OsIAA2,OsARF1, arf1, OsARF23, ARF23,OsIAA1, OsIAA4
32013	16604111	Subramanian S,Bonen L	Rapid evolution in sequence and length of the nuclear-located gene for mitochondrial L2 ribosomal protein in cereals.	Genome	49	275-81	2006		
32014	16582442	Ji HS,Chu SH,Jiang W,Cho YI,Hahn JH,Eun MY,McCouch SR,Koh HJ	Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes.	Genetics	173	995-1005	2006	SH-H	sh-h, OsCPL1
32015	16397796	Teixeira FK,Menezes-Benavente L,Galvao VC,Margis R,Margis-Pinheiro M	Rice ascorbate peroxidase gene family encodes functionally diverse isoforms localized in different subcellular compartments.	Planta.	224	300-14	2006	APX7,APX8,APX5,APX3,APX6,APX4,APX1,APX2	OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
32016	16362329	Toyota K,Tamura M,Ohdan T,Nakamura Y	Expression profiling of starch metabolism-related plastidic translocator genes in rice.	Planta.	223	248-57	2006	GPT2-1,PPT1,PPT3,BT1-1,PPT2,MT,TPT1,BT1-2,GPT2-3,NTT1,NTT2,PPT4,BT1-3,GPT1,TPT2,GPT2-2,PGLCT	OsGPT2-1,OsPPT1,OsPPT3,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsPPT2,OsMT, OsMEX1, MEX1,OsTPT1, TPT, tpt,OsBT1-2,OsGPT2-3,OsNTT1,OsNTT2,OsPPT4,OsBT1-3, SLA,OsGPT1,OsTPT2,OsGPT2-2,OsPGLCT
32017	16272412	Gu XY,Kianian SF,Foley ME	Dormancy genes from weedy rice respond divergently to seed development environments.	Genetics	172	1199-211	2006		
32023	17086397	Seiji Murayama and Hirokazu Handa	Genes for alkaline/neutral invertase in rice: alkaline/neutral invertases are located in plant mitochondria and also in plastids.	Planta.	225	1193-1203	2007		
32024		Qiu-lin Qin, Jin-ge Liu, Zhen Zhang, Ri-he Peng, Ai-sheng Xiong, Quan-hong Yao  and Jian-min Chen 	Isolation, optimization, and functional analysis of the cDNA encoding transcription factor OsDREB1B in Oryza Sativa L.	Molecular Breeding	19	329-340	2007		
32025	17185738	Fatima Alkhalfioui, Michelle Renard and Fran?oise Montrichard	Unique properties of NADP-thioredoxin reductase C in legumes.	J. Exp. Bot.	58	969-78	2007		
32026		Jerome Bernier, Arvind Kumar, Venuprasad Ramaiah, Dean Spaner and Gary Atlin	A Large-Effect QTL for Grain Yield under Reproductive-Stage Drought Stress in Upland Rice 	Crop Sci.	 47, no. 2	507-518	2007		
32027	17364223	Yeon Jong Koo, Myeong Ae Kim, Eun Hye Kim, Jong Tae Song, Choonkyun Jung, Joon-Kwan Moon, Jeong-Han Kim, Hak Soo Seo, Sang Ik Song, Ju-Kon Kim, Jong Seob Lee, Jong-Joo Cheong and Yang Do Choi 	Overexpression of salicylic acid carboxyl methyltransferase reduces salicylic acid-mediated pathogen resistance in Arabidopsis thaliana.	Plant Mol. Biol.	64	1-15	2007		
32032	17389586	Agnes Lendvai, Aladar Pettko-Szandtner, Eva Csord?s-Toth, Pal Miskolczi, Gabor V. Horvath, Janos Gyorgyey and Denes Dudits	Dicot and monocot plants differ in retinoblastoma-related protein subfamilies.	J. Exp. Bot.	58	1663-75	2007	_,_	Orysa;Rb2, RBR2, OsRBR1,Orysa;Rb1, RBR1, OsRBR2
32035		Virgilio C. Andaya and Thomas H. Tai	Fine mapping of the qCTS4 locus associated with seedling cold tolerance in rice (Oryza sativa L.).	Molecular Breeding	20	349-358	2007		
32037	17875553	Kimura, Atsuo	Function-unknown Glycoside Hydrolase Family 31 Proteins, mRNAs of which were Expressed in Rice Ripening and Germinating Stages, are a-Glucosidase and a-Xylosidase.	J. Biochem.	142	491-500	2007		
32049	18263782	Zhou J, Jiao F, Wu Z, Li Y, Wang X, He X, Zhong W, Wu P.	OsPHR2 Is Involved in Phosphate-Starvation Signaling and Excessive Phosphate Accumulation in Shoots of Plants.	Plant Physiol.	146(4)	1673-86.	2008	PHR1,PHR2,PAP10,LTN1	OsPHR1,OsPHR2, Os-PHR2,OsPAP10,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
32050	18208525	Jun Fang, Chenglin Chai, Qian Qian, Chunlai Li, Jiuyou Tang, Lei Sun, Zejun Huang, Xiaoli Guo, Changhui Sun, Min Liu, Yan Zhang, Qingtao Lu, Yiqin Wang, Congming Lu, Bin Han, Fan Chen, Zhukuan Cheng, and Chengcai Chu	Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice	Plant J.	54	177-189	2008		
32055	18266919	Atsushi Ishihara, Yumi Hashimoto, Chihiro Tanaka, Joseph G. Dubouzet, Takahito Nakao, Fumio Matsuda, Takaaki Nishioka, Hisashi Miyagawa and Kyo Wakasa 	The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production	Plant J.	54	481-495	2008		
32062	18680302	Wu, Mei-Li	Biosynthetic Mechanism of 2-Acetyl-1-pyrroline and Its Relationship with delta 1-Pyrroline-5-carboxylic Acid and Methylglyoxal in Aromatic Rice (Oryza sativa L.) Callus.	J. Agric. Food Chem.	56	7399-404	2008		
32063	18663452	Rajasekaran Sripriya, Vengoji Raghupathy and Karuppannan Veluthambi	Generation of selectable marker-free sheath blight resistant transgenic rice plants by efficient co-transformation of a cointegrate vector T-DNA and a binary vector T-DNA in one Agrobacterium tumefaciens strain.	Plant Cell Rep.	27	1635-44	2008		
32064	18679687	Gemma Pasquali, Stefano Biricolti, Franca Locatelli, Elena Baldoni and Monica Mattana	Osmyb4 expression improves adaptive responses to drought and cold stress in transgenic apples.	Plant Cell Rep.	27	1677-86	2008		
32066		Jing Li, Peng Xu, Xianneng Deng, Jiawu Zhou, Fengyi Hu, Jianmin Wan   and Dayun Tao	Identification of four genes for stable hybrid sterility and an epistatic QTL from a cross between Oryza sativa and Oryza glaberrima.	Euphytica	164	699-708	2008		
32067		Y. Xue , S. Q. Zhang, Q. H. Yao, R. H. Peng, A. S. Xiong, X. Li, W. M. Zhu, Y. Y. Zhu and D. S. Zha	Identification of quantitative trait loci for seed storability in rice (Oryza sativa L.).	Euphytica	164	739-744	2008		
32068		Yohei Koide, Mitsunobu Ikenaga, Yuhei Shinya, Kazuki Matsubara, Yoshio Sano	Two loosely linked genes controlling the female specificity for cross-incompatibility in rice.	Euphytica	164	753-760	2008	CIF1,CIM,CIF2,SUCIF	Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,cinm*, CINM, cim, cinm,,SuCinf*, SUCINF, Su-Cif, Su Cinf
32069		Fan Na Kong, Jia Yu Wang, Ji Cheng Zou, Li Xue Shi, Min De Jin, Zheng Jin Xu  and Bin Wang	Molecular tagging and mapping of the erect panicle gene in rice	Molecular Breeding	19	297-304	2007	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
32070		R. Naga Amrutha, P. Nataraj Sekhar, Rajeev K. Varshney and P.B. Kavi Kishor	Genome-wide analysis and identification of genes related to potassium transporter families in rice (Oryza sativa L.)	Plant Sci.	172(4)	708-721	2007	HAK26,HAK24,HAK2,HAK4,HAK7,HAK8,HAK12,HAK13,HAK14,HAK15,HAK3,HAK25,HAK6,HAK11,HAK5,HAK10,HAK21,LCS,HAK9,HAK16,HAK17,HAK18,HAK19,HAK20,HAK23,HAK22	OsHAK26,OsHAK24,OsHAK2,OsHAK4,OsHAK7,OsHAK8,OsHAK12,OsHAK13,OsHAK14,OsHAK15,OsHAK3,OsHAK25,OsHAK6, OsSTA42,OsHAK11,OsHAK5, FCO13, OsFCO13,OsHAK10,OsHAK21,OsHAK1, HAK1,OsHAK9,OsHAK16,OsHAK17, FCO3, FCO4,OsHAK18,OsHAK19,OsHAK20,OsHAK23,OsHAK22
32071	17876344	Li G, Lin F, Xue HW.	Genome-wide analysis of the phospholipase D family in Oryza sativa and functional characterization of PLD beta 1 in seed germination.	Cell Res	17(10)	881-94.	2007	NHL1,NHL2,NHL3,HAK27,PLDalpha8,PLDalpha5,PLDalpha6,PLDdelta3,PLDalpha7,PLDzeta1,PLDzeta2,PLDALPHA3,PLDbeta1,PLDbeta2,PLDdelta1,PLDalpha1,PLDalpha2,PLDalpha4,NYC3,NOL,PLDvarphi,PLDkappa,PLDdelta2	,,,OsHAK27,OsPLDalpha8, OsPLDlambda,OsPLDalpha5, RPLD4, OsPLDeta3,OsPLDalpha6, OsPLDeta1, OsPLDmu,OsPLDdelta3, OsPLDnu2,OsPLDalpha7, OsPLDtheta,OsPLDzeta1, OsPLDrho1 ,OsPLDzeta2, OsPLDrho2,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2,OsPLDbeta1,OsPLDbeta2, OsSTA86,OsPLDdelta1, OsPLDdelta, OsSTA233,RPLD1, PLD1, OsPLDalpha1,OsPLDalpha2,OsPLDalpha4, RPLD3, OsPLDeta2,nyc3, OsNYC3, PPH,nol, NOL1, OsNOL, OsNOL1,OsPLDvarphi,OsPLDkappa,OsPLDdelta2, RPLD5, OsPLDnu1
32072		Jirapong Jairin , Kittiphong Phengrat, Sanguan Teangdeerith, Apichart Vanavichit and Theerayut Toojinda	Mapping of a broad-spectrum brown planthopper resistance gene, Bph3, on rice chromosome 6	Molecular Breeding	19	35-44	2007	BPH3	Bph3
32073	19767453	Kitajima A, Asatsuma S, Okada H, Hamada Y, Kaneko K, Nanjo Y, Kawagoe Y, Toyooka K, Matsuoka K, Takeuchi M, Nakano A, Mitsui T.	The rice alpha-amylase glycoprotein is targeted from the Golgi apparatus through the secretory pathway to the plastids.	Plant Cell	21(9)	2844-58.	2009	AMY3B,AMY3C,AMY3E,AMY3D,AMY1A	Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A
32074	14745172	Nanjo Y, Asatsuma S, Itoh K, Hori H, Mitsui T.	Proteomic identification of alpha-amylase isoforms encoded by RAmy3B/3C from germinating rice seeds.	Biosci. Biotechnol. Biochem.	68(1)	112-8.	2004	AMY3C,AMY3B	Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C
32075		Mitsui T, Itoh K.	The alpha-amylase multigene family.	Trends Plant Sci.	2(7)	255-261	1997	AMY3D,AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 
32076	0	Bao,Y. and Ge,S.	Origin and phylogeny of Oryza species with the CD genome based on multiple-gene sequence data	Plant Syst. Evol.	249(1-2)	55-66	2004	ADH2,_,_,_,D1,ADH1	Adh2*, Adh2,trnL(UAA), trnL, trnL-UAA,trnF(GAA), trnF, trnF-GAA,matK, ORF542 ,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,Adh1, Adh1/2, adh1/adh2, OsADH1
32078	0	Buder,G., Grossmann,C., Hundsdoerfer,A.K. and Klass,K.D.	A contribution to the phylogeny of the Ciidae and its relationships with other cucujoid and tenebrionoid beetles (Coleoptera: Cucujiformia)	Arthropod Syst Phylogeny	66(2)	165-190	2008		
32083	19651988	Huang,X.Y., Chao,D.Y., Gao,J.P., Zhu,M.Z., Shi,M. and Lin,H.X.	A previously unknown zinc finger protein, DST, regulates drought and salt tolerance in rice via stomatal aperture control	Genes Dev.	23(15)	1805-1817	2009	DST	OsDST
32085	19607808	Koo,S.C., Moon,B.C., Kim,J.K., Kim,C.Y., Sung,S.J., Kim,M.C., Cho,M.J. and Cheong,Y.H.	OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33	Biochem. Biophys. Res. Commun.	387(2)	365-370	2009	BWMK1,WRKY81	OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,OsWRKY81, OsWRKY33
32087	19825585	Luo,J.-J., Hao,W., Jin,J., Gao,J.-P. and Lin,H.-X.	Fine Mapping of Spr3, a Locus for Spreading Panicle from African Cultivated Rice (Oryza glaberrima Steud.)	Mol Plant	1(5)	830-838	2008	SPR3	Spr3(t), Spr3
32088	15016817	Majee,M., Maitra,S., Dastidar,K.G., Pattnaik,S., Chatterjee,A., Hait,N.C., Das,K.P. and Majumder,A.L.	A novel salt-tolerant L-myo-inositol-1-phosphate synthase from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice: molecular cloning, bacterial overexpression, characterization, and functional introgression into tobacco-conferring salt tolerance phenotype	J. Biol. Chem.	279(27)	28539-28552	2004	INO1,_	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,PINO1, INO1
32091	0	Rangan,L., Rout,A., Sudarshan,M. and Gregorio,G.	Molecular cloning, expression and mapping of the translational initiation factor eIF1 gene in Oryza sativa	Funct. Plant Biol.	36(5)	442-452	2009	_	GOS2, OseIF1, OsGOS2, SUI1, PtfS 
32092	19018609	Sungkaew,S., Stapleton,C.M., Salamin,N. and Hodkinson,T.R.	Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s	J. Plant Res.	122(1)	95-108	2009	_,RPS16	matK, ORF542 ,rps16
32093	19543273	Sun,S.Y., Chao,D.Y., Li,X.M., Shi,M., Gao,J.P., Zhu,M.Z., Yang,H.Q., Luan,S. and Lin,H.X.	OsHAL3 mediates a new pathway in the light-regulated growth of rice	Nat. Cell Biol.	11(7)	845-851	2009	_,HIP1	OsHAL3, HAL3,OsHIP1, HAF1, OsHAF1
32094	19506305	Takano-Kai,N., Jiang,H., Kubo,T., Sweeney,M., Matsumoto,T., Kanamori,H., Padhukasahasram,B., Bustamante,C., Yoshimura,A., Doi,K. and McCouch,S.	Evolutionary history of GS3, a gene conferring grain length in rice	Genetics	182(4)	1323-34	2009	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
32096	19470578	Wang,K., Tang,D., Wang,M., Lu,J., Yu,H., Liu,J., Qian,B., Gong,Z., Wang,X., Chen,J., Gu,M. and Cheng,Z.	MER3 is required for normal meiotic crossover formation, but not for presynaptic alignment in rice	J. Cell Sci.	122(PT 12)	2055-2063	2009	RMC1	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
32098	19556706	Yoshida,K. and Miyashita,N.T.	DNA polymorphism in the blast disease resistance gene Pita of the wild rice Oryza rufipogon and its related species	Genes Genet. Syst.	84(2)	121-136	2009	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
32099	14504241	Matsubara K, Khin-Thidar, Sano Y.	A gene block causing cross-incompatibility hidden in wild and cultivated rice.	Genetics	165(1)	343-52.	2003	SUCIF,CIF1,CIM	SuCinf*, SUCINF, Su-Cif, Su Cinf,Cinf(t)*(Lcr), cinf(t), Cif, Lcr, Cinf,cinm*, CINM, cim, cinm
32100		Hidetaka Nishida, Hiromo Inoue, Yutaka Okumoto, Takatoshi Tanisaka	A Novel Gene ef1-h Conferring an Extremely Long Basic Vegetative Growth Period in Rice	Crop Sci.	42	348-354	2002		
32101	16539615	Li C, Zhou A, Sang T.	Genetic analysis of rice domestication syndrome with the wild annual species, Oryza nivara.	New Phytol.	170(1)	185-93.	2006	qSH3,qSH8,SH4	,sh8,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
32102	19493335	Yang B,Jiang Y,Rahman MH,Deyholos MK,Kav NN	Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments.	BMC Plant Biol	9	68	2009		
32103	19495721	Yuan Q,Saito H,Okumoto Y,Inoue H,Nishida H,Tsukiyama T,Teraishi M,Tanisaka T	Identification of a novel gene ef7 conferring an extremely long basic vegetative  growth phase in rice.	Theor. Appl. Genet.	119(4)	675-84	2009	HD3B	Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1
32104	19502382	Fujiwara M,Hamada S,Hiratsuka M,Fukao Y,Kawasaki T,Shimamoto K	Proteome analysis of detergent-resistant membranes (DRMs) associated with OsRac1-mediated innate immunity in rice.	Plant Cell Physiol.	50(7)	1191-200	2009		
32105	19506306	Shang J,Tao Y,Chen X,Zou Y,Lei C,Wang J,Li X,Zhao X,Zhang M,Lu Z,Xu J,Cheng Z,Wan J,Zhu L	Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site--leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes.	Genetics	182(4)	1303-11	2009	PID3	Pi-d3, Pid3, Pi25
32106	19508361	Hao W,Zhu MZ,Gao JP,Sun SY,Lin HX	Identification of quantitative trait loci for rice quality in a population of chromosome segment substitution lines.	J. Integr. Plant Biol.	51(5)	500-12	2009		
32107	19515790	Leasure CD,Tong H,Yuen G,Hou X,Sun X,He ZH	ROOT UV-B SENSITIVE2 acts with ROOT UV-B SENSITIVE1 in a root ultraviolet B-sensing pathway.	Plant Physiol.	150(4)	1902-15	2009		
32108	19519802	Yamauchi T,Johzuka-Hisatomi Y,Fukada-Tanaka S,Terada R,Nakamura I,Iida S	Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice.	Plant J.	60(2)	386-96	2009	MET1A	OsMET1a, OsMET1-1, MET1a, MET1-1
32109	19521518	Luan W,Chen H,Fu Y,Si H,Peng W,Song S,Liu W,Hu G,Sun Z,Xie D,Sun C	The effect of the crosstalk between photoperiod and temperature on the heading-date in rice.	PLoS One	4(6)	e5891	2009		
32110	19523506	Ma K,Xiao J,Li X,Zhang Q,Lian X	Sequence and expression analysis of the C3HC4-type RING finger gene family in rice.	Gene	444	33-45	2009		
32111	19529831	Xiao BZ,Chen X,Xiang CB,Tang N,Zhang QF,Xiong LZ	Evaluation of seven function-known candidate genes for their effects on improving drought resistance of transgenic rice under field conditions.	Mol Plant	2(1)	73-83	2009		
32112	19534828	Qiu D,Xiao J,Xie W,Cheng H,Li X,Wang S	Exploring transcriptional signalling mediated by OsWRKY13, a potential regulator  of multiple physiological processes in rice.	BMC Plant Biol	9	74	2009		
32113	19541604	Miura K,Agetsuma M,Kitano H,Yoshimura A,Matsuoka M,Jacobsen SE,Ashikari M	A metastable DWARF1 epigenetic mutant affecting plant stature in rice.	Proc. Natl. Acad. Sci. U.S.A.	106(27)	11218-23	2009		
32114	19542179	Arite T,Umehara M,Ishikawa S,Hanada A,Maekawa M,Yamaguchi S,Kyozuka J	d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers.	Plant Cell Physiol.	50(8)	1416-24	2009	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4
32115	19542298	Li RY,Ago Y,Liu WJ,Mitani N,Feldmann J,McGrath SP,Ma JF,Zhao FJ	The rice aquaporin Lsi1 mediates uptake of methylated arsenic species.	Plant Physiol.	150(4)	2071-80	2009	LSI1,LSI2	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi2, SIET1, OsLsi2
32116	19546322	Zhou Y,Zhu J,Li Z,Yi C,Liu J,Zhang H,Tang S,Gu M,Liang G	Deletion in a quantitative trait gene qPE9-1 associated with panicle erectness improves plant architecture during rice domestication.	Genetics	183(1)	315-24	2009	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
32117	19556707	Ishikawa M,Ohmori Y,Tanaka W,Hirabayashi C,Murai K,Ogihara Y,Yamaguchi T,Hirano HY	The spatial expression patterns of DROOPING LEAF orthologs suggest a conserved function in grasses.	Genes Genet. Syst.	84	137-46	2009		
32118	19556711	Ishikawa R,Shinomura T,Takano M,Shimamoto K	Phytochrome dependent quantitative control of Hd3a transcription is the basis of  the night break effect in rice flowering.	Genes Genet. Syst.	84	179-84	2009		
32119	19561057	Jang YH,Park HY,Kim SK,Lee JH,Suh MC,Chung YS,Paek KH,Kim JK	Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.	Plant Cell Physiol.	50(8)	1479-92	2009		
32120	19561334	Frey N,Klotz J,Nick P	Dynamic bridges--a calponin-domain kinesin from rice links actin filaments and microtubules in both cycling and non-cycling cells.	Plant Cell Physiol.	50(8)	1493-506	2009		
32121	19566645	Wang Z,Hu H,Huang H,Duan K,Wu Z,Wu P	Regulation of OsSPX1 and OsSPX3 on expression of OsSPX domain genes and Pi-starvation signaling in rice.	J. Integr. Plant Biol.	51(7)	663-74	2009	_,LTN1,_,_,_,_,MIR399D,MIR399J,IPS1,_	OsSPX2, SPX2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSPX4, SPX4, Os-SPX4,OsSPX3, SPX3,OsSPX6, SPX6,OsSPX5, SPX5,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsIPS1, IPS1,OsSPX1, SPX1
32122	19567376	Yasuda H,Hirose S,Kawakatsu T,Wakasa Y,Takaiwa F	Overexpression of BiP has inhibitory effects on the accumulation of seed storage  proteins in endosperm cells of rice.	Plant Cell Physiol.	50(8)	1532-43	2009	_,_	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
32123	19570592	Akiyama T,Jin S,Yoshida M,Hoshino T,Opassiri R,Ketudat Cairns JR	Expression of an endo-(1,3;1,4)-beta-glucanase in response to wounding, methyl jasmonate, abscisic acid and ethephon in rice seedlings.	J. Plant Physiol.	166(16)	1814-25	2009	_,_,_,_,_	OsEGL2,OsGLN1,OsPR2, Gns1, OsEGL1,OsPR2, PR2, Gns4, OsGLN2,Osg1, g1
32124	19574435	Mitani N,Chiba Y,Yamaji N,Ma JF	Identification and characterization of maize and barley Lsi2-like silicon efflux  transporters reveals a distinct silicon uptake system from that in rice.	Plant Cell	21(7)	2133-42	2009		
32125	19587102	Seshadri S,Akiyama T,Opassiri R,Kuaprasert B,Cairns JK	Structural and enzymatic characterization of Os3BGlu6, a rice beta-glucosidase hydrolyzing hydrophobic glycosides and (1->3)- and (1->2)-linked disaccharides.	Plant Physiol.	151(1)	47-58	2009	BGLU7,BGLU6	Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os3bglu6, Os3BGlu6, 3BGlu6
32126	19588119	Shan JX,Zhu MZ,Shi M,Gao JP,Lin HX	Fine mapping and candidate gene analysis of spd6, responsible for small panicle and dwarfness in wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	119(5)	827-36	2009		
32127	19593540	Yan HB,Pan XX,Jiang HW,Wu GJ	Comparison of the starch synthesis genes between maize and rice: copies, chromosome location and expression divergence.	Theor. Appl. Genet.	119(5)	815-25	2009		
32128	19603144	Gao Z,Qian Q,Liu X,Yan M,Feng Q,Dong G,Liu J,Han B	Dwarf 88, a novel putative esterase gene affecting architecture of rice plant.	Plant Mol. Biol.	71(3)	265-76	2009	_,_,_,_,D14,D27,D10,D3,D17,OSH1	OsCDAP2,OsCDAP3,OsCDAP1, GID1L2,D14L, ,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d27(d t), dt, dwf23, d27, OsD27,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
32129	19604382	Ngezahayo F,Xu C,Wang H,Jiang L,Pang J,Liu B	Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice.	BMC Plant Biol	9	91	2009		
32130	19605414	Nakamura A,Fujioka S,Takatsuto S,Tsujimoto M,Kitano H,Yoshida S,Asami T,Nakano T	Involvement of C-22-hydroxylated brassinosteroids in auxin-induced lamina joint bending in rice.	Plant Cell Physiol.	50(9)	1627-35	2009	BRD2,D61,D2,D11,DWARF4,BRD1	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
32131	19609685	Huang J,Zhao X,Yu H,Ouyang Y,Wang L,Zhang Q	The ankyrin repeat gene family in rice: genome-wide identification, classification and expression profiling.	Plant Mol. Biol.	71(3)	207-26	2009		
32132	19618278	Ye H,Du H,Tang N,Li X,Xiong L	Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.	Plant Mol. Biol.	71(3)	291-305	2009	TIFY11C,TIFY10A,TIFY11G,TIFY11E,TIFY11D,TIFY6A,TIFY11F,TIFY6B,TIFY9,TIFY8,GATA18 ,GATA17,EG2,TIFY10B,GATA19,GATA20,TIFY10C,TIFY11A,TIFY11B,TIFY5	OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ 15, OsJAZ15, OsTIFY11g,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ 14, OsJAZ14, OsTIFY11f,OsJAZ8, OsJAZ 4, OsJAZ4, OsTIFY6b,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9 ,OsJAZ12, OsTIFY8, OsSTA75,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsTIFY2a, OsCCT04, OsGATA17, OsGATA17a, OsGATA17b,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsTIFY1b, TIFY1B, OsCCT15, OsGATA19, OsGATA19a, OsGATA19b,OsTIFY2b, TIFY2B, OsCCT24, OsGATA20,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188
32133	19619287	Winters A,Heywood S,Farrar K,Donnison I,Thomas A,Webb KJ	Identification of an extensive gene cluster among a family of PPOs in Trifolium pratense L. (red clover) using a large insert BAC library.	BMC Plant Biol	9	94	2009		
32134	19622530	Yun MS,Kawagoe Y	Amyloplast division progresses simultaneously at multiple sites in the endosperm  of rice.	Plant Cell Physiol.	50(9)	1617-26	2009		
32135	19635799	Okada A,Okada K,Miyamoto K,Koga J,Shibuya N,Nojiri H,Yamane H	OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice.	J. Biol. Chem.	284(39)	26510-8	2009	KS7,KS4,MAS,CPS4,CYP99A3,CYP99A2,DXS3,BZIP37	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 ,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,,CYP99A2,OsDXS, OsDXS3, dxs3,OsTGAP1, TGAP1, OsbZIP37
32136	19648232	Tanaka A,Nakagawa H,Tomita C,Shimatani Z,Ohtake M,Nomura T,Jiang CJ,Dubouzet JG,Kikuchi S,Sekimoto H,Yokota T,Asami T,Kamakura T,Mori M	BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice.	Plant Physiol.	151(2)	669-80	2009	BU1,D1,D61,BRD1	ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
32137	19649188	Oki K,Kitagawa K,Fujisawa Y,Kato H,Iwasaki Y	Function of alpha subunit of heterotrimeric G protein in brassinosteroid response of rice plants.	Plant Signal Behav	4(2)	126-8	2009		
32138	19653105	Yokotani N,Ichikawa T,Kondou Y,Maeda S,Iwabuchi M,Mori M,Hirochika H,Matsui M,Oda K	Overexpression of a rice gene encoding a small C2 domain protein OsSMCP1 increases tolerance to abiotic and biotic stresses in transgenic Arabidopsis.	Plant Mol. Biol.	71(4-5)	391-402	2009		
32139	19656341	Zhou G,Qi J,Ren N,Cheng J,Erb M,Mao B,Lou Y	Silencing OsHI-LOX makes rice more susceptible to chewing herbivores, but enhances resistance to a phloem feeder.	Plant J.	60(4)	638-48	2009	_,LOX11	Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2
32140	19656904	Steffens B,Sauter M	Heterotrimeric G protein signaling is required for epidermal cell death in rice.	Plant Physiol.	151(2)	732-40	2009		
32141	19664599	Hu Y,Qin F,Huang L,Sun Q,Li C,Zhao Y,Zhou DX	Rice histone deacetylase genes display specific expression patterns and developmental functions.	Biochem. Biophys. Res. Commun.	388	266-71	2009	HDAC1,HDAC3,HDAC2	OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsHDAC3, HDA703,OsHDAC2, HDA710, OsHDA710 
32142	19666483	Onda Y,Kumamaru T,Kawagoe Y	ER membrane-localized oxidoreductase Ero1 is required for disulfide bond formation in the rice endosperm.	Proc. Natl. Acad. Sci. U.S.A.	106(33)	14156-61	2009		
32143	19669727	Rahman ML,Jiang W,Chu SH,Qiao Y,Ham TH,Woo MO,Lee J,Khanam MS,Chin JH,Jeung JU,Brar DS,Jena KK,Koh HJ	High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t)  and Bph21(t), originating from Oryza minuta.	Theor. Appl. Genet.	119(7)	1237-46	2009	BPH20,BPH21	Bph20(t),Bph21(t)
32144	19675157	Andres F,Galbraith DW,Talon M,Domingo C	Analysis of PHOTOPERIOD SENSITIVITY5 sheds light on the role of phytochromes in photoperiodic flowering in rice.	Plant Physiol.	151(2)	681-90	2009		
32145	19682283	Sazuka T,Kamiya N,Nishimura T,Ohmae K,Sato Y,Imamura K,Nagato Y,Koshiba T,Nagamura Y,Ashikari M,Kitano H,Matsuoka M	A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos.	Plant J.	60(2)	227-41	2009		
32146	19684243	Mugford ST,Qi X,Bakht S,Hill L,Wegel E,Hughes RK,Papadopoulou K,Melton R,Philo M,Sainsbury F,Lomonossoff GP,Roy AD,Goss RJ,Osbourn A	A serine carboxypeptidase-like acyltransferase is required for synthesis of antimicrobial compounds and disease resistance in oats.	Plant Cell	21(8)	2473-84	2009		
32147	19686374	Shi Y,Zhao S,Yao J	Premature tapetum degeneration: a major cause of abortive pollen development in photoperiod sensitive genic male sterility in rice.	J. Integr. Plant Biol.	51(8)	774-81	2009		
32148	19688299	Dai X,You C,Wang L,Chen G,Zhang Q,Wu C	Molecular characterization, expression pattern, and function analysis of the OsBC1L family in rice.	Plant Mol. Biol.	71(4-5)	469-81	2009	BC1L4,BC1L6,BC1L2,BC1L5,BC1L9,BC1L3,BC1L1,BC1L7,BC1L8	OsBC1L4,OsBC1L6,OsBC1L2,OsBC1L5,OsBC1L9,OsBC1L3,OsBC1L1,OsBC1L7,OsBC1L8
32149	19690613	Rohila JS,Chen M,Chen S,Chen J,Cerny RL,Dardick C,Canlas P,Fujii H,Gribskov M,Kanrar S,Knoflicek L,Stevenson B,Xie M,Xu X,Zheng X,Zhu JK,Ronald P,Fromm ME	Protein-protein interactions of tandem affinity purified protein kinases from rice.	PLoS One	4(8)	e6685	2009		
32150	19696351	Fukuoka S,Saka N,Koga H,Ono K,Shimizu T,Ebana K,Hayashi N,Takahashi A,Hirochika H,Okuno K,Yano M	Loss of function of a proline-containing protein confers durable disease resistance in rice.	Science	325	998-1001	2009	PI21	pi21, rMg40
32151	19697141	Zhang B,Deng L,Qian Q,Xiong G,Zeng D,Li R,Guo L,Li J,Zhou Y	A missense mutation in the transmembrane domain of CESA4 affects protein abundance in the plasma membrane and results in abnormal cell wall biosynthesis in rice.	Plant Mol. Biol.	71(4-5)	509-24	2009	BC7	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
32152	19700558	Tao Z,Liu H,Qiu D,Zhou Y,Li X,Xu C,Wang S	A pair of allelic WRKY genes play opposite roles in rice-bacteria interactions.	Plant Physiol.	151(2)	936-48	2009	WRKY45,PR1A,PAL1,AOS2,NH1,WRKY13,_,_,PR1B,_	OsWRKY45,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsWRKY13,PAD4, OsPAD4,ICS1, OsICS1, OsICS, ICS,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
32153	19700562	Kant S,Bi YM,Zhu T,Rothstein SJ	SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice.	Plant Physiol.	151(2)	691-701	2009	SAUR39	OsSAUR39
32154	19701685	Qin Y,Ye H,Tang N,Xiong L	Systematic identification of X1-homologous genes reveals a family involved in stress responses in rice.	Plant Mol. Biol.	71(4-5)	483-96	2009		
32155	19702667	Gao D,Gill N,Kim HR,Walling JG,Zhang W,Fan C,Yu Y,Ma J,SanMiguel P,Jiang N,Cheng Z,Wing RA,Jiang J,Jackson SA	A lineage-specific centromere retrotransposon in Oryza brachyantha.	Plant J.	60(5)	820-31	2009	FRETRO2,FRETRO1,FRETRO3,FRETRO4,FRETRO5,RIRE2	FRetro2,FRetro1,FRetro3,FRetro4,FRetro5,RIRE2, Osr26, Rire2, Retrosat2
32156	19702669	Wu J,Fujisawa M,Tian Z,Yamagata H,Kamiya K,Shibata M,Hosokawa S,Ito Y,Hamada M,Katagiri S,Kurita K,Yamamoto M,Kikuta A,Machita K,Karasawa W,Kanamori H,Namiki N,Mizuno H,Ma J,Sasaki T,Matsumoto T	Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.	Plant J.	60(5)	805-19	2009		
32157	19706531	Kovach MJ,Calingacion MN,Fitzgerald MA,McCouch SR	The origin and evolution of fragrance in rice (Oryza sativa L.).	Proc. Natl. Acad. Sci. U.S.A.	106(34)	14444-9	2009	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
32158	19706555	Takano M,Inagaki N,Xie X,Kiyota S,Baba-Kasai A,Tanabata T,Shinomura T	Phytochromes are the sole photoreceptors for perceiving red/far-red light in rice.	Proc. Natl. Acad. Sci. U.S.A.	106(34)	14705-10	2009	PHYC,PHYA,RBCS,PHYB,_,SE5	OsPHYC, OsPHYCa, OsPHYCb,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,phyB, PHYB1, OsPHYB, OsphyB,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
32159	19711051	Shan XH,Ou XF,Liu ZL,Dong YZ,Lin XY,Li XW,Liu B	Transpositional activation of mPing in an asymmetric nuclear somatic cell hybrid  of rice and Zizania latifolia was accompanied by massive element loss.	Theor. Appl. Genet.	119(7)	1325-33	2009		
32160	19714920	Guo Y,Song Y	Differential proteomic analysis of apoplastic proteins during initial phase of salt stress in rice.	Plant Signal Behav	4(2)	121-2	2009		
32161	19717618	Wang F,Zhu D,Huang X,Li S,Gong Y,Yao Q,Fu X,Fan LM,Deng XW	Biochemical insights on degradation of Arabidopsis DELLA proteins gained from a cell-free assay system.	Plant Cell	21(8)	2378-90	2009		
32162	19720627	Suzuki Y,Nakabayashi K,Yoshizawa R,Mae T,Makino A	Differences in expression of the RBCS multigene family and rubisco protein content in various rice plant tissues at different growth stages.	Plant Cell Physiol.	50(10)	1851-5	2009		
32163	19723240	Ma L,Bao J,Guo L,Zeng D,Li X,Ji Z,Xia Y,Yang C,Qian Q	Quantitative trait Loci for panicle layer uniformity identified in doubled haploid lines of rice in two environments.	J. Integr. Plant Biol.	51(9)	818-24	2009		
32164	19723241	Liu WY,Wang MM,Huang J,Tang HJ,Lan HX,Zhang HS	The OsDHODH1 gene is involved in salt and drought tolerance in rice.	J. Integr. Plant Biol.	51(9)	825-33	2009	_	OsDHODH1
32165	19723247	Hu SP,Zhou Y,Zhang L,Zhu XD,Li L,Luo LJ,Liu GL,Zhou QM	Correlation and quantitative trait loci analyses of total chlorophyll content and photosynthetic rate of rice (Oryza sativa) under water stress and well-watered conditions.	J. Integr. Plant Biol.	51(9)	879-88	2009		
32166	19723322	Itoh N,Toda H,Matsuda M,Negishi T,Taniguchi T,Ohsawa N	Involvement of S-adenosylmethionine-dependent halide/thiol methyltransferase (HTMT) in methyl halide emissions from agricultural plants: isolation and characterization of an HTMT-coding gene from Raphanus sativus (daikon radish).	BMC Plant Biol	9	116	2009		
32167	19727653	Xu JH,Messing J	Amplification of prolamin storage protein genes in different subfamilies of the Poaceae.	Theor. Appl. Genet.	119(8)	1397-412	2009		
32168	19729221	Taheri P,Tarighi S	Riboflavin induces resistance in rice against Rhizoctonia solani via jasmonate-mediated priming of phenylpropanoid pathway.	J. Plant Physiol.	167(3)	201-8	2010		
32169	20131478	Sanan-Mishra N,Kumar V,Sopory SK,Mukherjee SK	Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses.	Mol. Genet. Genomics	282(5)	463-474	2009		
32170	19734433	Yamaji N,Ma JF	A transporter at the node responsible for intervascular transfer of silicon in rice.	Plant Cell	21(9)	2878-83	2009	LSI6	Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2
32171	19737364	Kobayashi T,Itai RN,Ogo Y,Kakei Y,Nakanishi H,Takahashi M,Nishizawa NK	The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes.	Plant J.	60(6)	948-61	2009	IDEF1,YSL2,DMAS1,IRT1,NAS1,_,NAS3,NAS2,YSL15	OsLFL2, LFL2, OsIDEF1,OsYSL2, Os-YSL2, OsYs6 ,OsDMAS1,OsIRT1,OsNAS1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS3,OsNAS2,OsYSL15, OsYs7
32172	19745569	Sunohara H,Kawai T,Shimizu-Sato S,Sato Y,Sato K,Kitano H	A dominant mutation of TWISTED DWARF 1 encoding an alpha-tubulin protein causes severe dwarfism and right helical growth in rice.	Genes Genet. Syst.	84	209-18	2009	TID1	OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, 
32173	19749151	Reinheimer R,Kellogg EA	Evolution of AGL6-like MADS box genes in grasses (Poaceae): ovule expression is ancient and palea expression is new.	Plant Cell	21(9)	2591-605	2009	MADS17,MFO1	OsMADS17, NMADS3, RMADS213, nmads3,OsMADS6, MADS6, OsMFO1
32174	19751706	Huang J,Sun SJ,Xu DQ,Yang X,Bao YM,Wang ZF,Tang HJ,Zhang H	Increased tolerance of rice to cold, drought and oxidative stresses mediated by the overexpression of a gene that encodes the zinc finger protein ZFP245.	Biochem. Biophys. Res. Commun.	389	556-61	2009	ZFP245,P5CS	OsZFP245,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
32175	19756471	Piao R,Jiang W,Ham TH,Choi MS,Qiao Y,Chu SH,Park JH,Woo MO,Jin Z,An G,Lee J,Koh HJ	Map-based cloning of the ERECT PANICLE 3 gene in rice.	Theor. Appl. Genet.	119(8)	1497-506	2009	EP3	EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3
32176	19763843	Liu Q,Zhang Q,Burton RA,Shirley NJ,Atwell BJ	Expression of vacuolar H(+)-pyrophosphatase (OVP3) is under control of an anoxia-inducible promoter in rice.	Plant Mol. Biol.	72(1-2)	47-60	2010		
32177	19765235	Li M,Xiong G,Li R,Cui J,Tang D,Zhang B,Pauly M,Cheng Z,Zhou Y	Rice cellulose synthase-like D4 is essential for normal cell-wall biosynthesis and plant growth.	Plant J.	60(6)	1055-69	2009	CSLD3,CSLD2,CSLD5,ND1	OsCSLD3,OsCSLD2,OsCSLD5,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1
32178	19768557	Gollan PJ,Bhave M	Genome-wide analysis of genes encoding FK506-binding proteins in rice.	Plant Mol. Biol.	72(1-2)	1-16	2010		
32179	19772648	Berri S,Abbruscato P,Faivre-Rampant O,Brasileiro AC,Fumasoni I,Satoh K,Kikuchi S,Mizzi L,Morandini P,Pe ME,Piffanelli P	Characterization of WRKY co-regulatory networks in rice and Arabidopsis.	BMC Plant Biol	9	120	2009	WRKY16,WRKY45,WRKY71,WRKY68,WRKY42,WRKY5,WRKY76,WRKY80,WRKY53,WRKY18,WRKY88,WRKY31,WRKY94,WRKY43,WRKY12,WRKY15,WRKY51,WRKY58,WRKY27,WRKY63,WRKY110,WRKY32,WRKY34,WRKY36,WRKY37,WRKY70,WRKY107,WRKY40,WRKY52,WRKY104,WRKY106,WRKY74,WRKY55,WRKY69,WRKY73,WRKY90,WRKY28,WRKY75,WRKY72,WRKY117,WRKY118,WRKY121,WRKY114,WRKY19,WRKY39,WRKY116,WRKY111,WRKY56,WRKY65,WRKY95,WRKY82,WRKY6,WRKY7,WRKY79,WRKY84,WRKY20,WRKY87,WRKY47,WRKY22,WRKY54,WRKY96,WRKY66,WRKY102,WRKY108,WRKY113,WRKY81,WRKY67,WRKY89,WRKY105,WRKY109,WRKY115,WRKY9,WRKY64,WRKY50,WRKY1,WRKY24,WRKY14,WRKY46,WRKY23,WRKY13,WRKY57,WRKY29,WRKY35,WRKY30,WRKY112,WRKY4,WRKY8,WRKY10,WRKY17,WRKY11,WRKY119,WRKY2,WRKY21,WRKY3,WRKY26,WRKY25,WRKY48,WRKY60,WRKY49,WRKY61,WRKY77,WRKY62	OsWRKY16,OsWRKY45,OsWRKY71, WRKY-71,OsWRKY68,OsWRKY42, WRKY-42,OsWRKY5 ,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY80,OsWRKY53, WRKY-53,OsWRKY18,OsWRKY88,OsWRKY31,OsWRKY94,OsWRKY43,OsWRKY12,OsWRKY15,OsWRKY51,OsWRKY58,OsWRKY27,OsWRKY63,OsWRKY110,OsWRKY32,OsWRKY34,OsWRKY36,OsWRKY37,OsWRKY70,OsWRKY107,OsWRKY40,OsWRKY52,OsWRKY104,OsWRKY106,OsWRKY74,OsWRKY55,OsWRKY69,OsWRKY73,OsWRKY90,OsWRKY28,OsWRKY75,OsWRKY72, WRKY-72,OsWRKY117,OsWRKY118,OsWRKY121,OsWRKY114,OsWRKY19,OsWRKY39,OsWRKY116,OsWRKY111,OsWRKY56,OsWRKY65,OsWRKY95,OsWRKY82,OsWRKY6, WRKY-6,OsWRKY7,OsWRKY79, WRKY-79,OsWRKY84,OsWRKY20,OsWRKY87, OsSUSIBA2-like,OsWRKY47,OsWRKY22,OsWRKY54,OsWRKY96,OsWRKY66,OsWRKY102,OsWRKY108,OsWRKY113,OsWRKY81, OsWRKY33,OsWRKY67,OsWRKY89,OsWRKY105,OsWRKY109,OsWRKY115,OsWRKY9,OsWRKY64,OsWRKY50,OsWRKY1, OsWRKY1v2,OsWRKY24,OsWRKY14,OsWRKY46, WRKY91, OsWRKY91,OsWRKY23,OsWRKY13,OsWRKY57,OsWRKY29,OsWRKY35,OsWRKY30,OsWRKY112,OsWRKY4, WRKY122, OsWRKY122,OsWRKY8,OsWRKY10,OsWRKY17,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY119,OsWRKY2,OsWRKY21,OsWRKY3 ,OsWRKY26, OsWRKY59,OsWRKY25, OsWRKY44, WRKY44,OsWRKY48,OsWRKY60,OsWRKY49,OsWRKY61, OsWRKY103, WRKY103,OsWRKY77, WRKY-77,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10
32180	19776160	Zhang SW,Li CH,Cao J,Zhang YC,Zhang SQ,Xia YF,Sun DY,Sun Y	Altered architecture and enhanced drought tolerance in rice via the down-regulation of indole-3-acetic acid by TLD1/OsGH3.13 activation.	Plant Physiol.	151(4)	1889-901	2009	TLD1	OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2
32181	19778402	Wei XJ,Jiang L,Xu JF,Liu X,Liu SJ,Zhai HQ,Wan JM	The distribution of japonica rice cultivars in the lower region of the Yangtze River valley is determined by its photoperiod-sensitivity and heading date genotypes.	J. Integr. Plant Biol.	51(10)	922-32	2009		
32182	19778404	Zhao FY,Liu W,Zhang SY	Different responses of plant growth and antioxidant system to the combination of  cadmium and heat stress in transgenic and non-transgenic rice.	J. Integr. Plant Biol.	51(10)	942-50	2009		
32183	19798512	Hiraga S,Sasaki K,Hibi T,Yoshida H,Uchida E,Kosugi S,Kato T,Mie T,Ito H,Katou S,Seo S,Matsui H,Ohashi Y,Mitsuhara I	Involvement of two rice ETHYLENE INSENSITIVE3-LIKE genes in wound signaling.	Mol. Genet. Genomics	282(5)	517-29	2009	EIL3,EIL2,EIL4,EIL5,EIL6,EIL1	OsEIL3,OsEIL2,OsEIL4,OsEIL5,OsEIL6,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a
32184	19807881	Ji H,Kim SR,Kim YH,Kim H,Eun MY,Jin ID,Cha YS,Yun DW,Ahn BO,Lee MC,Lee GS,Yoon UH,Lee JS,Lee YH,Suh SC,Jiang W,Yang JI,Jin P,McCouch SR,An G,Koh HJ	Inactivation of the CTD phosphatase-like gene OsCPL1 enhances the development of  the abscission layer and seed shattering in rice.	Plant J.	61(1)	96-106	2010	SH-H	sh-h, OsCPL1
32185	19808806	Nakamura H,Muramatsu M,Hakata M,Ueno O,Nagamura Y,Hirochika H,Takano M,Ichikawa H	Ectopic overexpression of the transcription factor OsGLK1 induces chloroplast development in non-green rice cells.	Plant Cell Physiol.	50(11)	1933-49	2009	_,_,_,SIG2B,_,SIG5,RPOTP,YGL13,SIG6	RbcS, RbcS4, OsRBCS4, OsRbcS4,OsGLK2, OsGlk2,GADPH, OsGAPDHB, GAPDHB,OsSIG2B,OsGLK1, OsGlk1,OsSIG5, OsSig5, Os Sig5,OsRpo Tp, OsRpoTp, NEP, RpoTp,OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA,OsSIG6, OsSig6
32186	19808807	Endo M,Tsuchiya T,Hamada K,Kawamura S,Yano K,Ohshima M,Higashitani A,Watanabe M,Kawagishi-Kobayashi M	High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.	Plant Cell Physiol.	50(11)	1911-22	2009		
32187	19812064	Aohara T,Kotake T,Kaneko Y,Takatsuji H,Tsumuraya Y,Kawasaki S	Rice BRITTLE CULM 5 (BRITTLE NODE) is involved in secondary cell wall formation in the sclerenchyma tissue of nodes.	Plant Cell Physiol.	50(11)	1886-97	2009	BC5	bc5, bn, bc-5
32188	19812186	Chang Y,Gong L,Yuan W,Li X,Chen G,Li X,Zhang Q,Wu C	Replication protein A (RPA1a) is required for meiotic and somatic DNA repair but  is dispensable for DNA replication and homologous recombination in rice.	Plant Physiol.	151(4)	2162-73	2009	RPA1A	OsRPA70a, OsRPA1a, RPA1a
32189	19816106	Matsuda T,Kuramata M,Takahashi Y,Kitagawa E,Youssefian S,Kusano T	A novel plant cysteine-rich peptide family conferring cadmium tolerance to yeast  and plants.	Plant Signal Behav	4(5)	419-21	2009	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
32190	19816108	Cho K,Agrawal GK,Jwa NS,Shibato J,Torres NL,Kubo A,Rakwal R	Rice OsSIPK: a central component of ozone-triggered physiological responses.	Plant Signal Behav	4(5)	448-50	2009		
32191	19816111	Tong H,Chu C	Roles of DLT in fine modulation on brassinosteroid response in rice.	Plant Signal Behav	4(5)	438-9	2009		
32192	19816140	Miwa H,Tamaki T,Fukuda H,Sawa S	Evolution of CLE signaling: origins of the CLV1 and SOL2/CRN receptor diversity.	Plant Signal Behav	4(6)	477-81	2009		
32193	19820190	Ohmori S,Kimizu M,Sugita M,Miyao A,Hirochika H,Uchida E,Nagato Y,Yoshida H	MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.	Plant Cell	21(10)	3008-25	2009	MADS17,MFO1	OsMADS17, NMADS3, RMADS213, nmads3,OsMADS6, MADS6, OsMFO1
32194	19820307	Chung PJ,Kim JK	Epigenetic interaction of OsHDAC1 with the OsNAC6 gene promoter regulates rice root growth.	Plant Signal Behav	4(7)	675-7	2009	HDAC1,NAC6	OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
32195	19820313	Goh CH	Phototropins and chloroplast activity in plant blue light signaling.	Plant Signal Behav	4(8)	693-5	2009		
32196	19820319	Kim YS,Kim JK	Rice transcription factor AP37 involved in grain yield increase under drought stress.	Plant Signal Behav	4(8)	735-6	2009		
32197	19820348	Taga Y,Takai R,Kaneda T,Matsui H,Isogai A,Che FS	Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.	Plant Signal Behav	4(8)	740-2	2009	NAC4,IREN,HSP90	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
32198	19822337	Takashima S,Seino J,Nakano T,Fujiyama K,Tsujimoto M,Ishida N,Hashimoto Y	Analysis of CMP-sialic acid transporter-like proteins in plants.	Phytochemistry	70(17-18)	1973-81	2009		
32199	19822730	Lee S,Costanzo S,Jia Y,Olsen KM,Caicedo AL	Evolutionary dynamics of the genomic region around the blast resistance gene Pi-ta in AA genome oryza species.	Genetics	183(4)	1315-25	2009	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
32200	19822732	Ducrocq S,Giauffret C,Madur D,Combes V,Dumas F,Jouanne S,Coubriche D,Jamin P,Moreau L,Charcosset A	Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10.	Genetics	183(4)	1555-63	2009		
32201	19823935	Gu XY,Liu T,Feng J,Suttle JC,Gibbons J	The qSD12 underlying gene promotes abscisic acid accumulation in early developing seeds to induce primary dormancy in rice.	Plant Mol. Biol.	73(1-2)	97-104	2010		
32202	19825616	Chibani K,Wingsle G,Jacquot JP,Gelhaye E,Rouhier N	Comparative genomic study of the thioredoxin family in photosynthetic organisms with emphasis on Populus trichocarpa.	Mol Plant	2(2)	308-22	2009		
32203	19825651	Luo M,Platten D,Chaudhury A,Peacock WJ,Dennis ES	Expression, imprinting, and evolution of rice homologs of the polycomb group genes.	Mol Plant	2(4)	711-23	2009	EMF2B,EMF2A,CLF,IEZ1,FIE1,FIE2	OsEMF2b, EMF2b,OsEMF2a, OsEMF2, EMF2,OsSET24, SDG711, EZ1, OsCLF,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsFIE2, FIE, OsWD40-153
32204	19825657	Wang JR,Hu H,Wang GH,Li J,Chen JY,Wu P	Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones.	Mol Plant	2(4)	823-31	2009	PIN4,PIN5A,PIN1D,PIN5C,PIN10B,PIN1C,PIN5B,LRA1,PIN1A,PIN1B,PIN10A,PIN9,PIN8	OsPIN4,OsPIN5a,OsPIN1D, OsPIN1d,PIN5B, OsPIN5b, OsPIN5c,PIN3B, OsPIN3b, OsPIN10b,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN5C, OsPIN5c, OsPIN5b,OsPIN2, PIN2, OsLRA1,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsPIN9,OsPIN8
32205	19825675	Caffall KH,Pattathil S,Phillips SE,Hahn MG,Mohnen D	Arabidopsis thaliana T-DNA mutants implicate GAUT genes in the biosynthesis of pectin and xylan in cell walls and seed testa.	Mol Plant	2(5)	1000-14	2009		
32206	19825680	Ishimaru Y,Bashir K,Fujimoto M,An G,Itai RN,Tsutsumi N,Nakanishi H,Nishizawa NK	Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in  iron homeostasis.	Mol Plant	2(5)	1059-66	2009	_	OsMIR, MIR 
32207	19825834	Swaminathan S,Morrone D,Wang Q,Fulton DB,Peters RJ	CYP76M7 is an ent-cassadiene C11alpha-hydroxylase defining a second multifunctional diterpenoid biosynthetic gene cluster in rice.	Plant Cell	21(10)	3315-25	2009	KS1,KS5,CYP71Z6,CYP76M6,CYP76M1,CYP76L1,CYP71Z3,CYP71Z5,CYP76C2,CYP71W1,CYP71B13,CYP76M5,CYP76M14,CYP76M9,CYP76M10,CYP76M13,CYP76M2,CYP76M8,CYP71Z8,CYP99A3,CYP99A2,CYP71Z1,CYP76M7,CYP71Z2,KSL10,KSL11,KS7,CPS2,KS4,CYP71Z4,KS6,CPS4,D35,KS8,CYP71Z7	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8,Oscyp71Z6,CYP76M6,CYP76M1,CYP76L1,Oscyp71Z3,Oscyp71Z5,CYP76C2,CYP71W1,CYP71B13,CYP76M5,CYP76M14,CYP76M9,CYP76M10,CYP76M13,CYP76M2,CYP76M8,Oscyp71Z8,,CYP99A2,Oscyp71Z1,OsCYP76M7, CYP76M10, OsCYP76M10,Oscyp71Z2,OsKSL10, KS10, OsKS10, OsTPS33,OsKSL11, KS11, OsKS11,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,Oscyp71Z4,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,Oscyp71Z7
32208	19938377	Cho JI,Ryoo N,Hahn TR,Jeon JS	Evidence for a role of hexokinases as conserved glucose sensors in both monocot and dicot plant species.	Plant Signal Behav	4(9)	908-910	2009		
32209	19826229	Sanz A,Llamas A,Ullrich CI	Distinctive phytotoxic effects of Cd and Ni on membrane functionality.	Plant Signal Behav	4(10)	980-2	2009		
32210	19826775	Zhou Y,Cao Y,Huang Y,Xie W,Xu C,Li X,Wang S	Multiple gene loci affecting genetic background-controlled disease resistance conferred by R gene Xa3/Xa26 in rice.	Theor. Appl. Genet.	120(1)	127-38	2009		
32211	20514239	Kant S,Rothstein S	Auxin-responsive SAUR39 gene modulates auxin level in rice.	Plant Signal Behav	4(12)	1174-1175	2009	SAUR39	OsSAUR39
32212	20514236	Senadheera P,Maathuis FJ	Differentially regulated kinases and phosphatases in roots may contribute to inter-cultivar difference in rice salinity tolerance.	Plant Signal Behav	4(12)	1163-1165	2009		
32213	19830390	Gothandam KM,Nalini E,Karthikeyan S,Shin JS	OsPRP3, a flower specific proline-rich protein of rice, determines extracellular  matrix structure of floral organs and its overexpression confers cold-tolerance.	Plant Mol. Biol.	72(1-2)	125-35	2010		
32214	19833360	Violante-Mota F,Tellechea E,Moran JF,Sarath G,Arredondo-Peter R	Analysis of peroxidase activity of rice (Oryza sativa) recombinant hemoglobin 1:  Implications for in vivo function of hexacoordinate non-symbiotic hemoglobins in  plants.	Phytochemistry	71(1)	21-26	2010		
32215	19837870	Kuroha T,Tokunaga H,Kojima M,Ueda N,Ishida T,Nagawa S,Fukuda H,Sugimoto K,Sakakibara H	Functional analyses of LONELY GUY cytokinin-activating enzymes reveal the importance of the direct activation pathway in Arabidopsis.	Plant Cell	21(10)	3152-69	2009	LABA1,LOG1,LOGL1,LOGL2,LOGL3,LOGL4,LOGL5,LOGL10,LOGL8,LOGL7,LOGL9	LOGL6, OsLOGL6, An-2,LOG1, LOG, Log, log,LOGL1,LOGL2,LOGL3,LOGL4,LOGL5,LOGL10,LOGL8,LOGL7,LOGL9
32216	19841886	Venuprasad R,Dalid CO,Del Valle M,Zhao D,Espiritu M,Sta Cruz MT,Amante M,Kumar A,Atlin GN	Identification and characterization of large-effect quantitative trait loci for grain yield under lowland drought stress in rice using bulk-segregant analysis.	Theor. Appl. Genet.	120(1)	177-90	2009		
32217	19843335	Fauteux F,Stromvik MV	Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae.	BMC Plant Biol	9	126	2009		
32218	19847104	Ghanashyam C,Jain M	Role of auxin-responsive genes in biotic stress responses.	Plant Signal Behav	4(9)	846-8	2009	SAUR39,SAUR5,SAUR10,SAUR21,SAUR22,SAUR25,SAUR28,SAUR30,SAUR33,SAUR38,SAUR53,SAUR58,SAUR2,SAUR12,SAUR57,SAUR19,SAUR20	OsSAUR39,OsSAUR5,OsSAUR10,OsSAUR21,OsSAUR22,OsSAUR25,OsSAUR28,OsSAUR30,OsSAUR33,OsSAUR38,OsSAUR53,OsSAUR58,OsSAUR2,OsSAUR12,OsSAUR57,OsSAUR19,OsSAUR20
32219	19847266	Naito K,Zhang F,Tsukiyama T,Saito H,Hancock CN,Richardson AO,Okumoto Y,Tanisaka T,Wessler SR	Unexpected consequences of a sudden and massive transposon amplification on rice  gene expression.	Nature	461	1130-4	2009		
32220	19851874	Fujino K,Matsuda Y	Genome-wide analysis of genes targeted by qLTG3-1 controlling low-temperature germinability in rice.	Plant Mol. Biol.	72(1-2)	137-52	2010		
32221	19853963	Lee K,Bae DW,Kim SH,Han HJ,Liu X,Park HC,Lim CO,Lee SY,Chung WS	Comparative proteomic analysis of the short-term responses of rice roots and leaves to cadmium.	J. Plant Physiol.	167(3)	161-8	2010		
32222	19856189	Petit J,Bourgeois E,Stenger W,Bes M,Droc G,Meynard D,Courtois B,Ghesquiere A,Sabot F,Panaud O,Guiderdoni E	Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus.	Mol. Genet. Genomics	282(6)	633-52	2009		
32223	19864426	Oda T,Hashimoto H,Kuwabara N,Akashi S,Hayashi K,Kojima C,Wong HL,Kawasaki T,Shimamoto K,Sato M,Shimizu T	Structure of the N-terminal regulatory domain of a plant NADPH oxidase and its functional implications.	J. Biol. Chem.	285(2)	1435-45	2010		
32224	20514227	Fernandes J,Tavares S,Amancio S	Identification and expression of cytokinin signaling and meristem identity genes  in sulfur deficient grapevine (Vitis vinifera L.).	Plant Signal Behav	4(12)	1128-1135	2009		
32225	19880795	Yamaji N,Huang CF,Nagao S,Yano M,Sato Y,Nagamura Y,Ma JF	A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice.	Plant Cell	21(10)	3339-49	2009	STAR2,CDT3,EXPA10,STAR1,ART1	OsSTAR2, OsSATR2,OsCDT3,OsEXPA10, OsEXP10, osaEXPa1.28,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,ART1, STAR3
32226	19885651	Fu Z,Yan J,Zheng Y,Warburton ML,Crouch JH,Li JS	Nucleotide diversity and molecular evolution of the PSY1 gene in Zea mays compared to some other grass species.	Theor. Appl. Genet.	120(4)	709-20	2010	PSY1	PSY1, OsPSY1 
32227	19888555	Li T,Gong C,Wang T	RA68 is required for postmeiotic pollen development in Oryza sativa.	Plant Mol. Biol.	72(3)	265-77	2010		
32228	19889878	Yao X,Horie T,Xue S,Leung HY,Katsuhara M,Brodsky DE,Wu Y,Schroeder JI	Differential sodium and potassium transport selectivities of the rice OsHKT2;1 and OsHKT2;2 transporters in plant cells.	Plant Physiol.	152(1)	341-55	2010		
32229	19890663	Chaudhary N,Nijhawan A,Khurana JP,Khurana P	Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis.	Mol. Genet. Genomics	283(1)	13-33	2010		
32230	19891703	Lacombe S,Bangratz M,Vignols F,Brugidou C	The rice yellow mottle virus P1 protein exhibits dual functions to suppress and activate gene silencing.	Plant J.	61(3)	371-82	2010		
32231	19891707	Gomi K,Satoh M,Ozawa R,Shinonaga Y,Sanada S,Sasaki K,Matsumura M,Ohashi Y,Kanno H,Akimitsu K,Takabayashi J	Role of hydroperoxide lyase in white-backed planthopper (Sogatella furcifera Horvath)-induced resistance to bacterial blight in rice, Oryza sativa L.	Plant J.	61(1)	46-57	2010		
32232	19892983	Lee SW,Han SW,Sririyanum M,Park CJ,Seo YS,Ronald PC	A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity.	Science	326	850-3	2009		
32233	19898814	Chi XF,Lou XY,Shu QY	Combining DNA pooling with selective recombinant genotyping for increased efficiency in fine mapping.	Theor. Appl. Genet.	120(4)	775-83	2010		
32234	19898828	Li Q,Yang X,Bai G,Warburton ML,Mahuku G,Gore M,Dai J,Li J,Yan J	Cloning and characterization of a putative GS3 ortholog involved in maize kernel  development.	Theor. Appl. Genet.	120(4)	753-63	2010	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
32235	19901325	Yoshida A,Suzaki T,Tanaka W,Hirano HY	The homeotic gene long sterile lemma (G1) specifies sterile lemma identity in the rice spikelet.	Proc. Natl. Acad. Sci. U.S.A.	106(47)	20103-8	2009	G1L2,G1L1,G1L9,G1L4,G1,BLS1,G1L7,G1L5,G1L8,G1L3	OsG1L2,OsG1L1,OsG1L9,OsG1L4,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsG1L7,OsG1L5, TAW1, OsTAW1,OsG1L8,OsG1L3
32236	19903225	Zhu SQ,Zhao H,Zhou R,Ji BH,Dan XY	Substrate selectivity of glycerol-3-phosphate acyl transferase in rice.	J. Integr. Plant Biol.	51(11)	1040-9	2009		
32237	19903869	Wu L,Zhang Q,Zhou H,Ni F,Wu X,Qi Y	Rice MicroRNA effector complexes and targets.	Plant Cell	21(11)	3421-35	2009	AGO1C,AGO1D,MIR2863A,MIR2865,MIR2866,MIR2867,MIR2868,MIR2869,MIR2870,MIR2863B,MIR2905,MIR2872,MIR2873,MIR2874,MIR2875,MIR2876,MIR2877,MIR2878,MIR2879,MIR2880,MIR2871A,MIR1863B,MIR2864,MIR396G,MIR396H,AGO1B,AGO1A	OsAGO1c, OsAGO1, AGO1, AGO1c,OsAGO1d, AGO1d,miR2863a, osa-miR2863a, osa-MIR2863a,miR2865, osa-miR2865, osa-MIR2865,miR2866, osa-miR2866, osa-MIR2866,miR2867, osa-miR2867, osa-MIR2867osa-miR2867-3p osa-miR2867-5p,miR2868, osa-miR2868, osa-MIR2868,miR2869, osa-miR2869, osa-MIR2869,miR2870, osa-miR2870, osa-MIR2870,miR2863b, osa-miR2863b, osa-MIR2863b,miR2905, osa-miR2905, osa-MIR2905,miR2872, osa-miR2872, osa-MIR2872,miR2873, osa-miR2873, osa-MIR2873, osa-MIR2873a,miR2874, osa-miR2874, osa-MIR2874,miR2875, osa-miR2875, osa-MIR2875,miR2876, osa-miR2876, osa-MIR2876, osa-miR2876.1, osa-miR2876.2,miR2877, osa-miR2877, osa-MIR2877,miR2878, osa-miR2878, osa-MIR2878, osa-miR2878-5p, osa-miR2878-3posa-miR2878-3p osa-miR2878-5p,miR2879, osa-miR2879, osa-MIR2879,miR2880, osa-miR2880, osa-MIR2880,miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p,miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p,miR2864, osa-miR2864, osa-MIR2864, osa-miR2864.1, osa-miR2864.2,miR396g, osa-miR396g, osa-MIR396g,miR396h, osa-miR396h, osa-MIR396h,OsAGO1b, AGO1b, AGO1-2 ,OsAGO1a, AGO1a, AGO10, AGO1-1 
32238	19903871	Strader LC,Beisner ER,Bartel B	Silver ions increase auxin efflux independently of effects on ethylene response.	Plant Cell	21(11)	3585-90	2009		
32239	19910532	Romer P,Recht S,Lahaye T	A single plant resistance gene promoter engineered to recognize multiple TAL effectors from disparate pathogens.	Proc. Natl. Acad. Sci. U.S.A.	106(48)	20526-31	2009		
32240	19923234	Hong JP,Byun MY,An K,Yang SJ,An G,Kim WT	OsKu70 is associated with developmental growth and genome stability in rice.	Plant Physiol.	152(1)	374-87	2010	_,_	OsKu80, Ku80,OsKu70, Ku70
32241	19924544	Huang S,Taylor NL,Narsai R,Eubel H,Whelan J,Millar AH	Functional and composition differences between mitochondrial complex II in Arabidopsis and rice are correlated with the complex genetic history of the enzyme.	Plant Mol. Biol.	72(3)	331-42	2010	_,SDH2,SDH3,SDH2-2,SDH1,SDH4,SDH5,SDH6,SDH7	sdh3, SDH3,SDHB, sdhB, RPS14, rps14, sdh2-1, SDH2-RPS14,,sdh2-2,sdh1, FP, sdh1-1,,,,
32242	19926801	Zimmermann R,Sakai H,Hochholdinger F	The Gibberellic Acid Stimulated-Like gene family in maize and its role in lateral root development.	Plant Physiol.	152(1)	356-65	2010		
32243	19930558	Gupta AB,Sankararamakrishnan R	Genome-wide analysis of major intrinsic proteins in the tree plant Populus trichocarpa: characterization of XIP subfamily of aquaporins from evolutionary perspective.	BMC Plant Biol	9	134	2009		
32244	19933265	Kumamaru T,Uemura Y,Inoue Y,Takemoto Y,Uddin Siddiqui S,Ogawa M,Hara-Nishimura I,Satoh H	Vacuolar Processing Enzyme plays an Essential Role in the Crystalline Structure of Glutelin in Rice Seed.	Plant Cell Physiol.	51(1)	38-46	2010		
32245	19933266	Urayama S,Moriyama H,Aoki N,Nakazawa Y,Okada R,Kiyota E,Miki D,Shimamoto K,Fukuhara T	Knock-down of OsDCL2 in Rice Negatively Affects Maintenance of the Endogenous dsRNA Virus, Oryza sativa Endornavirus.	Plant Cell Physiol.	51(1)	58-67	2010	RDR1,RDR4,RDR2,DCL2A,DCL3A,RDR3,RDR5	OsRDR1,OsRDR4, OsRDR3b,OsRDR2,OsDCL2a, OsDCL2,OsDCL3a,OsRDR3, OsRDR3a,OsRDR5
32246	19933267	Kobayashi K,Maekawa M,Miyao A,Hirochika H,Kyozuka J	PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice.	Plant Cell Physiol.	51(1)	47-57	2010	PAP2	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 
32247	19933874	Zhu K,Tang D,Yan C,Chi Z,Yu H,Chen J,Liang J,Gu M,Cheng Z	ERECT PANICAL2 Encodes a Novel Protein That Regulates Panicle Erectness in Indica Rice.	Genetics	184(2)	343-50.	2010	DEP2,EP2	,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, CL7(t)
32248	19938377	Cho JI,Ryoo N,Hahn TR,Jeon JS	Evidence for a role of hexokinases as conserved glucose sensors in both monocot and dicot plant species.	Plant Signal Behav	4(9)	908-10	2009		
32249	19949766	Liu T,Shao D,Kovi MR,Xing Y	Mapping and validation of quantitative trait loci for spikelets per panicle and 1,000-grain weight in rice (Oryza sativa L.).	Theor. Appl. Genet.	120(5)	933-42	2010		
32250	19949767	Maas LF,McClung A,McCouch S	Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice.	Theor. Appl. Genet.	120(5)	895-908	2010	HD3A,YL1,MADS50,EMF1,SE1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,OsEMF1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
32251	19953291	Kusumi K,Hirotsuka S,Shimada H,Chono Y,Matsuda O,Iba K	Contribution of chloroplast biogenesis to carbon-nitrogen balance during early leaf development in rice.	J. Plant Res.	short communication		2009		
32252	19957018	Lim SD,Yim WC,Moon JC,Kim DS,Lee BM,Jang CS	A gene family encoding RING finger proteins in rice: their expansion, expression  diversity, and co-expressed genes.	Plant Mol. Biol.	72(4-5)	369-80	2010		
32253	19965875	Sun Y,Reinders A,Lafleur KR,Mori T,Ward JM	Transport Activity of Rice Sucrose Transporters OsSUT1 and OsSUT5.	Plant Cell Physiol.	51(1)	114-122	2010	SUT1,SUT4,SUT3,SUT5,SUT2	OsSUT1, OsSUT2,OsSUT4(t), OsSUT4,OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
32254	19965963	Liu X,Williams CE,Nemacheck JA,Wang H,Subramanyam S,Zheng C,Chen MS	Reactive Oxygen Species Are Involved in Plant Defense against a Gall Midge.	Plant Physiol.	152(2)	985-9	2010		
32255	19969519	Cohu CM,Abdel-Ghany SE,Gogolin Reynolds KA,Onofrio AM,Bodecker JR,Kimbrel JA,Niyogi KK,Pilon M	Copper delivery by the copper chaperone for chloroplast and cytosolic copper/zinc-superoxide dismutases: regulation and unexpected phenotypes in an Arabidopsis mutant.	Mol Plant	2(6)	1336-50	2009		
32256	20003164	Cui R,Han J,Zhao S,Su K,Wu F,Du X,Xu Q,Chong K,Theissen G,Meng Z	Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).	Plant J.	61(5)	767-81	2010	MADS24,MADS7,LHS1,MADS5	OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsMADS5, FDRMADS2
32257	20007444	Ning J,Li X,Hicks LM,Xiong L	A Raf-like MAPKKK gene DSM1 mediates drought resistance through ROS scavenging in rice.	Plant Physiol.	152(2)	876-90	2010	DSM1,POX8.1,_,POX22.3,_	OsDSM1,POX8.1, prx110, POX8,,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,
32258	20007447	Ogiso E,Takahashi Y,Sasaki T,Yano M,Izawa T	The role of casein kinase II in flowering time regulation has diversified during evolution.	Plant Physiol.	152(2)	808-20	2010	SE1,HD6,_,_,_,CCA1,TOC1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,OsCKA2-2, CKA2-2,OsCKA2-4, CKA2-4,OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
32259	20008096	Charron JB,He H,Elling AA,Deng XW	Dynamic Landscapes of Four Histone Modifications during Deetiolation in Arabidopsis.	Plant Cell	21(12)	3732-48	2009		
32260	20009022	Zhang LY,Bai MY,Wu J,Zhu JY,Wang H,Zhang Z,Wang W,Sun Y,Zhao J,Sun X,Yang H,Xu Y,Kim SH,Fujioka S,Lin WH,Chong K,Lu T,Wang ZY	Antagonistic HLH/bHLH Transcription Factors Mediate Brassinosteroid Regulation of Cell Elongation and Plant Development in Rice and Arabidopsis.	Plant Cell	21(12)	3767-80	2009	_,ILI5,BU1,ILI3,ILI6,ILI1,ILI7,ILI2	Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2,ILI6, OsILI6, PGL1, OsPGL1,ILI1, OsbHLH154, OsILI1,OsILI7, OsbHLH173, bHLH173,ILI2, OsbHLH186, bHLH186
32261	20009505	Shimizu H,Shinomura T,Yamamoto KT	Similarities and differences between phytochrome-mediated growth inhibition of coleoptiles and seminal roots in rice seedlings.	Plant Signal Behav	5(2)	134-5	2010		
32262	20012261	Peng HF,Chen XH,Lu YP,Peng YF,Wan BH,Chen ND,Wu B,Xin SP,Zhang GQ	Fine mapping of a gene for non-pollen type thermosensitive genic male sterility in rice (Oryza sativa L.).	Theor. Appl. Genet.	120(5)	1013-20	2010		
32263	20012263	Suh JP,Jeung JU,Lee JI,Choi YH,Yea JD,Virk PS,Mackill DJ,Jena KK	Identification and analysis of QTLs controlling cold tolerance at the reproductive stage and validation of effective QTLs in cold-tolerant genotypes of rice (Oryza sativa L.).	Theor. Appl. Genet.	120(5)	985-95	2010		
32264	20015061	Yoshii M,Yamazaki M,Rakwal R,Kishi-Kaboshi M,Miyao A,Hirochika H	The NAC transcription factor RIM1 of rice is a new regulator of jasmonate signaling.	Plant J.	61(5)	804-15	2010	OG1,AOS2,RIM1	OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsAOS2, CYP74A2, OsAOS, OsAOS1,ONAC054, ONAC54, NAC54
32265	20017947	Zhu QH,Upadhyaya NM,Gubler F,Helliwell CA	Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa).	BMC Plant Biol	9	149	2009	SNB,MIR172B,MIR172C,MIR172D,MIR172A	AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a 
32266	20018598	Takenaka M	MEF9, an E subclass PPR protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis thaliana.	Plant Physiol.	152(2)	939-47	2010	MEF9	
32267	20018603	You MK,Shin HY,Kim YJ,Ok SH,Cho SK,Jeung JU,Yoo SD,Kim JK,Shin JS	Novel bifunctional nucleases, OmBBD and AtBBD1, are involved in ABA-mediated callose deposition in Arabidopsis.	Plant Physiol.	152(2)	1015-29	2010	_,_	OsBBD1,OmBBD
32268	20018701	Du B,Zhang W,Liu B,Hu J,Wei Z,Shi Z,He R,Zhu L,Chen R,Han B,He G	Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice.	Proc. Natl. Acad. Sci. U.S.A.	106(52)	22163-22168	2009	BPH14	Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
32269	20021558	Duan ZQ,Bai L,Zhao ZG,Zhang GP,Cheng FM,Jiang LX,Chen KM	Drought-stimulated activity of plasma membrane nicotinamide adenine dinucleotide  phosphate oxidase and its catalytic properties in rice.	J. Integr. Plant Biol.	51(12)	1104-15	2009		
32270	20023399	Kobayashi T,Nakanishi H,Nishizawa NK	Dual regulation of iron deficiency response mediated by the transcription factor  IDEF1.	Plant Signal Behav	5(2)	157-9	2010		
32271	20023405	Meng Y,Chen D,Ma X,Mao C,Cao J,Wu P,Chen M	Mechanisms of microRNA-mediated auxin signaling inferred from the rice mutant osaxr.	Plant Signal Behav	5(3)	252-4	2010		
32272	20028842	Shim D,Hwang JU,Lee J,Lee S,Choi Y,An G,Martinoia E,Lee Y	Orthologs of the Class A4 Heat Shock Transcription Factor HsfA4a Confer Cadmium Tolerance in Wheat and Rice.	Plant Cell	21(12)	4031-43	2009		
32273	20032208	Shinya T,Osada T,Desaki Y,Hatamoto M,Yamanaka Y,Hirano H,Takai R,Che FS,Kaku H,Shibuya N	Characterization of receptor proteins using affinity cross-linking with biotinylated ligands.	Plant Cell Physiol.	51(2)	262-70	2010		
32274	20035315	Chin JH,Lu X,Haefele SM,Gamuyao R,Ismail A,Wissuwa M,Heuer S	Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1.	Theor. Appl. Genet.	120(6)	1073-86	2010		
32275	20037474	Xu Y,Cao H,Chong K	APC-targeted RAA1 degradation mediates the cell cycle and root development in plants.	Plant Signal Behav	5(3).	218-23	2010		
32276	20039013	Tezuka K,Miyadate H,Katou K,Kodama I,Matsumoto S,Kawamoto T,Masaki S,Satoh H,Yamaguchi M,Sakurai K,Takahashi H,Satoh-Nagasawa N,Watanabe A,Fujimura T,Akagi H	A single recessive gene controls cadmium translocation in the cadmium hyperaccumulating rice cultivar Cho-Ko-Koku.	Theor. Appl. Genet.	120(6)	1175-82	2010		
32277	20039179	Fang Y,Xie K,Hou X,Hu H,Xiong L	Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses.	Mol. Genet. Genomics	283(2)	157-69	2010		
32278	20039193	Amir Hossain M,Lee Y,Cho JI,Ahn CH,Lee SK,Jeon JS,Kang H,Lee CH,An G,Park PB	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor  that enhances abiotic stress signaling in rice.	Plant Mol. Biol.	72(4-5)	557-66	2010	BZIP12,_,NAC6,LEA3-1	OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2,OsABA45, ABA45, OsGDP, GDP,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
32279	20040584	Izawa Y,Takayanagi Y,Inaba N,Abe Y,Minami M,Fujisawa Y,Kato H,Ohki S,Kitano H,Iwasaki Y	Function and Expression Pattern of the {alpha} Subunit of the Heterotrimeric G Protein in Rice.	Plant Cell Physiol.	51(2)	271-81	2010		
32280	20049613	Matsukura S,Mizoi J,Yoshida T,Todaka D,Ito Y,Maruyama K,Shinozaki K,Yamaguchi-Shinozaki K	Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes.	Mol. Genet. Genomics	283(2)	185-96	2010	ERF117,ERF41,ERF44,ERF42,DREB2A	OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
32281	20062964	Fujita D,Ebron LA,Araki E,Kato H,Khush GS,Sheehy JE,Lafarge T,Fukuta Y,Kobayashi N	Fine mapping of a gene for low-tiller number, Ltn, in japonica rice (Oryza sativa L.) variety Aikawa 1.	Theor. Appl. Genet.	120(6)	1233-40	2010		
32282	20064202	Gutierrez AG,Carabali JS,Giraldo OX,Martinez CP,Correa F,Prado G,Tohme J,Lorieux M	Identification of a Rice Stripe Necrosis Virus resistance locus and yield component QTLs using Oryza sativa x O. glaberrima introgression lines.	BMC Plant Biol	10	6	2010		
32283	20072620	Liu F,Xu W,Wei Q,Zhang Z,Xing Z,Tan L,Di C,Yao D,Wang C,Tan Y,Yan H,Ling Y,Sun C,Xue Y,Su Z	Gene expression profiles deciphering rice phenotypic variation between Nipponbare (Japonica) and 93-11 (Indica) during oxidative stress.	PLoS One	5(1)	e8632	2010		
32284	11448732	Takai R, Hasegawa K, Kaku H, Shibuya N, Minami E.	Isolation and analysis of expression mechanisms of a rice gene, EL5, which shows structural similarity to ATL family from Arabidopsis, in response to N-acetylchitooligosaccharide elicitor.	Plant Sci.	160(4)	577-583	2001	RRF1,EL5	,EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6
32285		Liu H., Chen Y., Li G., Lin X.-Q., Qin R.	Analyses of karyotypes and comparative physical locations of the resistance gene, Xa-5, between Oryza sativa and Oryza officinalis	African Journal of Biotechnology	8(21)	5673-5678	2009		
32286		Hao Z.N., Wang J., Wang L.P., Tao R.X.	Influences of the disease resistance conferred by the individual transgenes, Pi-d2, Pi-d3 and Xa21, on the transgenic rice plants in yield and grain quality	African Journal of Biotechnology	8(19)	4845-4848	2009	PID3,PID2	Pi-d3, Pid3, Pi25,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t)
32287		Kuriakose B., Ganesan V., Thomas G., Viswanathan A., Anand N.	Random amplification of genomic ends (RAGE) as an efficient method for isolation and cloning of promoters and uncloned genomic regions	African Journal of Biotechnology	8(19)	4765-4773	2009		
32288		Naqvi S.M.S., Raza S.Q., Hyder M.Z., Ozalp C.V., Oktem H.A., Yucel M.	Sub-cellular distribution of two salt-induced peptides in roots of Oryza sativa L. var Nonabokra	African Journal of Biotechnology	8(18)	4613-4617	2009		
32289		Niranjan Reddy B.P., Bhavna R., Kotasthane A.S.	Saturation mapping of QTL region determining resistance specificity to bacterial leaf blight pathogen in rice with molecular markers, ESTs and genes on sequences in silico	African Journal of Biotechnology	8(17)	4058-4065	2009		
32290		Chen G., Pourkheirandish M., Sameri M., Wang N., Nair S., Shi Y., Li C., Nevo E., Komatsuda T.	Genetic targeting of candidate genes for drought sensitive gene eibi1 of wild barley (Hordeum spontaneum)	Breeding Science	59(5)	637-644	2009		
32291		Win K.T., Kubo T., Miyazaki Y., Doi K., Yamagata Y., Yoshimura A.	Identification of two loci causing F<sub>1</sub> pollen sterility in inter- and intraspecific crosses of rice	Breeding Science	59(4)	411-418	2009	S25	S25(t), S25(t)*
32292		Karki S., Tsukiyama T., Okumoto Y., Rizal G., Naito K., Teraishi M., Nakazaki T., Tanisaka T.	Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.)	Breeding Science	59(3)	297-307	2009		
32293		Takehisa H., Yasuda M., Fukuta Y., Kobayashi N., Hayashi N., Nakashita H., Abe T., Sato T.	Genetic analysis of resistance genes in an Indica-type rice (Oryza sativa L.), Kasalath, using DNA markers	Breeding Science	59(3)	253-260	2009		
32294		Kawasaki A., Imai K., Ushiki J., Ishii T., Ishikawa R.	Molecular constitution of weedy rice (Oryza sativa L.) found in Okayama prefecture, Japan	Breeding Science	59(3)	229-236	2009		
32295		Katayama H., Mori M., Kawamura Y., Tanaka T., Mori M., Hasegawa H.	Production and characterization of transgenic rice plants carrying a high-affinity nitrate transporter gene (OsNRT2.1)	Breeding Science	59(3)	237-243	2009	NRT2.1	OsNRT2.1, OsNRT2.2
32296		Hori K., Yamamoto T., Ebana K., Takeuchi Y., Yano M.	A novel quantitative trait locus, qCL1, involved in semi-dwarfism derived from Japanese rice cultivar Nipponbare	Breeding Science	59(3)	285-295	2009		
32297		Yuo T., Toyota M., Ichii M., Taketa S.	Molecular cloning of a root hairless gene rth1 in rice	Breeding Science	59(1)	13-20	2009	_,RTH1	OsAPYL,OsAPY, RTH1
32298		Dufey I., Hakizimana P., Draye X., Lutts S., Bertin P.	QTL mapping for biomass and physiological parameters linked to resistance mechanisms to ferrous iron toxicity in rice	Euphytica	167(3)	143-160	2009		
32299		Yan C.-J., Yan S., Yang Y.-C., Zeng X.-H., Fang Y.-W., Zeng S.-Y., Tian C.-Y., Sun Y.-W., Tang S.-Z., Gu M.-H.	Development of gene-tagged markers for quantitative trait loci underlying rice yield components	Euphytica	169(2)	215-226	2009		
32300		Liu W., Zeng J., Jiang G., He Y.	QTLs identification of crude fat content in brown rice and its genetic basis analysis using DH and two backcross populations	Euphytica	169(2)	197-205	2009		
32301		Bernier J., Kumar A., Venuprasad R., Spaner D., Verulkar S., Mandal N.P., Sinha P.K., Peeraju P., Dongre P.R., Mahto R.N., Atlin G.	Characterization of the effect of a QTL for drought resistance in rice, qtl12.1, over a range of environments in the Philippines and eastern India	Euphytica	166(2)	207-217	2009		
32302		Subashri M., Robin S., Vinod K.K., Rajeswari S., Mohanasundaram K., Raveendran T.S.	Trait identification and QTL validation for reproductive stage drought resistance in rice using selective genotyping of near flowering RILs	Euphytica	166(2)	291-305	2009		
32303		Norton G.J., Price A.H.	Mapping of quantitative trait loci for seminal root morphology and gravitropic response in rice	Euphytica	166(2)	229-237	2009		
32304		Xue D., Chen M., Zhang G.	Mapping of QTLs associated with cadmium tolerance and accumulation during seedling stage in rice (Oryza sativa L.)	Euphytica	165(3)	587-596	2009		
32305		Baruah A.R., Ishigo-Oka N., Adachi M., Oguma Y., Tokizono Y., Onishi K., Sano Y.	Cold tolerance at the early growth stage in wild and cultivated rice	Euphytica	165(3)	459-470	2009		
32306		Wu S.-J., Zhong H., Zhou Y., Zuo H., Zhou L.-H., Zhu J.-Y., Ji C.-Q., Gu S.-L., Gu M.-H., Liang G.-H.	Identification of QTLs for the resistance to rice stripe virus in the indica rice variety Dular	Euphytica	165(3)	557-565	2009		
32307		Kashiwagi T., Hirotsu N., Ujiie K., Ishimaru K.	Lodging resistance locus prl5 improves physical strength of the lower plant part under different conditions of fertilization in rice (Oryza sativa L.)	Field Crops Research	115(1)	107-115	2010		
32308		Tomita M.	Introgression of Green Revolution sd1 gene into isogenic genome of rice super cultivar Koshihikari to create novel semidwarf cultivar 'Hikarishinseiki' (Koshihikari-sd1)	Field Crops Research	114(2)	173-181	2009		
32309		Kato Y., Nemoto K., Yamagishi J.	QTL analysis of panicle morphology response to irrigation regime in aerobic rice culture	Field Crops Research	114(2)	295-303	2009		
32310		Cairns J.E., Audebert A., Mullins C.E., Price A.H.	Mapping quantitative trait loci associated with root growth in upland rice (Oryza sativa L.) exposed to soil water-deficit in fields with contrasting soil properties	Field Crops Research	114(1)	108-118	2009		
32311		Cairns J.E., Namuco O.S., R.Torres, Simborio F.A., Courtois B., Aquino G.A., Johnson D.E.	Investigating early vigour in upland rice (Oryza sativa L.): Part II. Identification of QTLs controlling early vigour under greenhouse and field conditions	Field Crops Research	113(3)	207-217	2009		
32312		Yi M., Nwe K.T., Vanavichit A., Chai-arree W., Toojinda T.	Marker assisted backcross breeding to improve cooking quality traits in Myanmar rice cultivar Manawthukha	Field Crops Research	113(2)	178-186	2009		
32313		Singh S., Mackill D.J., Ismail A.M.	Responses of SUB1 rice introgression lines to submergence in the field: Yield and grain quality	Field Crops Research	113(1)	12-23	2009		
32314		Jairin J., Teangdeerith S., Leelagud P., Kothcharerk J., Sansen K., Yi M., Vanavichit A., Toojinda T.	Development of rice introgression lines with brown planthopper resistance and KDML105 grain quality characteristics through marker-assisted selection	Field Crops Research	110(3)	263-271	2009		
32315		Bernier J., Serraj R., Kumar A., Venuprasad R., Impa S., R.P. V.G., Oane R., Spaner D., Atlin G.	The large-effect drought-resistance QTL qtl12.1 increases water uptake in upland rice	Field Crops Research	110(2)	139-146	2009		
32316		Hwang S.-G., Chen H.-C., Huang W.-Y., Chu Y.-C., Shii C.-T., Cheng W.-H.	Ectopic expression of rice OsNCED3 in Arabidopsis increases ABA level and alters leaf morphology	Plant Sci.	178(1)	12-22	2010		
32317		Stein R.J., Ricachenevsky F.K., Fett J.P.	Differential regulation of the two rice ferritin genes (OsFER1 and OsFER2)	Plant Sci.	177(6)	563-569	2009		
32318		Yoon S., Park J., Ryu M., Yoon I.S., Kim K.-N.	Calcineurin B-like proteins in rice can bind with calcium ion and associate with the Arabidopsis CIPK family members	Plant Sci.	177(6)	577-583	2009	CBL1,CBL3,CBL5	OsCBL1, Os-CBL1,OsCBL3,OsCBL5
32319		Costanzo S., Jia Y.	Alternatively spliced transcripts of Pi-ta blast resistance gene in Oryza sativa	Plant Sci.	177(5)	468-478	2009	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
32320		Chaudhary N., Khurana P.	Vitamin E biosynthesis genes in rice: Molecular characterization, expression profiling and comparative phylogenetic analysis	Plant Sci.	177(5)	479-491	2009		
32321		Kuriakose B., Arun V., Gnanamanickam S.S., Thomas G.	Tissue-specific expression in transgenic rice and Arabidopsis thaliana plants of GUS gene driven by the 50 regulatory sequences of an anther specific rice gene YY2	Plant Sci.	177(5)	390-397	2009	LAP6	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6
32322		Fukayama H., Fukuda T., Masumoto C., Taniguchi Y., Sakai H., Cheng W., Hasegawa T., Miyao M.	Rice plant response to long term CO<sub>2</sub> enrichment: Gene expression profiling	Plant Sci.	177(3)	203-210	2009		
32323		Ariyaratne M., Takamure I., Kato K.	Shoot branching control by reduced culm number 4 in rice (Oryza sativa L.)	Plant Sci.	176(6)	744-748	2009		
32324		Yao S.-G., Kodama R., Wang H., Ichii M., Taketa S., Yoshida H.	Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family	Plant Sci.	176(5)	627-634	2009		
32325		Jain M.	Genome-wide identification of novel internal control genes for normalization of gene expression during various stages of development in rice	Plant Sci.	176(5)	702-706	2009		
32326		Hu W., Hu G., Han B.	Genome-wide survey and expression profiling of heat shock proteins and heat shock factors revealed overlapped and stress specific response under abiotic stresses in rice	Plant Sci.	176(4)	583-590	2009		
32328		Mohapatra P.K., Sarkar R.K., Kuanar S.R.	Starch synthesizing enzymes and sink strength of grains of contrasting rice cultivars	Plant Sci.	176(2)	256-263	2009		
32329		LI B.-z., MERRICK M., LI S.-m., LI H.-y., ZHU S.-w., SHI W.-m., SU Y.-h.	Molecular Basis and Regulation of Ammonium Transporter in Rice	Rice Science	16(4)	314-322	2009	AMT4;1,AMT2;2,AMT5;2,AMT5;1,AMT2;3,AMT2;1,AMT3;2,AMT3;3,AMT3;1,AMT1;3,AMT1;1,AMT1;2	OsAMT4, OsAMT4;1, AMT4-1,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT5.2, OsAMT5;2,OsAMT5.1, OsAMT5;1,OsAMT2;3, AMT2;3, OsAMT2.3,OsAMT2;1, AMT2-1, OsAMT2.1,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
32330		WANG X.-g., JI Z.-j., CAI J., MA L.-y., LI X.-m., YANG C.-d.	Construction of Near Isogenic Lines for Pericarp Color and Evaluation on Their Near isogenicity in Rice	Rice Science	16(4)	261-266	2009		
32331		CHA-UM S., SUPAIBULWATTANA K., KIRDMANEE C.	Comparative Effects of Salt Stress and Extreme pH Stress Combined on Glycinebetaine Accumulation, Photosynthetic Abilities and Growth Characters of Two Rice Genotypes	Rice Science	16(4)	274-282	2009		
32332		FANG L.-k., SANG X.-c., YANG Z.-l., LIN Y.-h., WAN N., HE G.-h.	Genetic Analysis and Gene Mapping of a Rice Tiller Angle Mutant tac2	Rice Science	16(4)	323-326	2009		
32333		XIAO Y.-l., YU C.-y., LEI J.-g., LI M.-z., JIANG L., WAN J.-m.	Genetic Mechanism of Dominant Earliness in Kefeng A, a New Rice Cytoplasmic Male Sterile Line	Rice Science	16(4)	267-273	2009		
32334		WANG Z.-f., WANG J.-f., WANG F.-h., BAO Y.-m., WU Y.-y., ZHANG H.-s.	Genetic Control of Germination Ability under Cold Stress in Rice	Rice Science	16(3)	173-180	2009		
32335		WU K., RAO Y.-c., HU J., ZHU G.-l., ZHANG G.-h., HU X.-m., GUO L.-b., WANG Y.-h., QIAN Q., ZENG D.-l.	Characterization and Fine Mapping of Non-panicle Mutant (nop) in Rice	Rice Science	16(3)	165-172	2009		
32336		WEI K.-s., CHENG F.-m., ZHANG Q.-f., LIU K.-g.	Temperature Stress at Grain Filling Stage Mediates Expression of Three Isoform Genes Encoding Starch Branching Enzymes in Rice Endosperm	Rice Science	16(3)	187-193	2009		
32337		KONG Y., WANG Z., CHEN J., PAN X.-t., LIU D.-t., ZHANG E.-j.	Effects of Ethephon on Aerenchyma Formation in Rice Roots	Rice Science	16(3)	210-216	2009		
32338		Chen S., Cai S.-g., Chen X., Zhang G.-p.	Genotypic Differences in Growth and Physiological Responses to Transplanting and Direct Seeding Cultivation in Rice	Rice Science	16(2)	143-150	2009		
32339		Wang D., Sun S.-x., Gao F.-y., Lu X.-j., Li Z.-h., Ren G.-j.	Mapping a Rice Glabrous Gene Using Simple Sequence Repeat Markers	Rice Science	16(2)	93-98	2009		
32340		Liu Q.-h., Zhou X.-b., Yang L.-q., Li T.	Effects of Chalkiness on Cooking, Eating and Nutritional Qualities of Rice in Two indica Varieties	Rice Science	16(2)	161-164	2009		
32341		Chen T., Zhang Y.-d., Zhao L., Zhu Z., Lin J., Zhang S.-b., Wang C.-l.	A Cleaved Amplified Polymorphic Sequence Marker to Detect Variation in Wx Locus Conditioning Translucent Endosperm in Rice	Rice Science	16(2)	106-110	2009		
32342		GE C.-l., WANG Z.-g., WAN D.-z., DING Y., WANG Y.-l., SHANG Q., LUO S.-s.	Proteomic Study for Responses to Cadmium Stress in Rice Seedlings	Rice Science	16(1)	33-44	2009		
32343		LI J.-b., XIA M.-y., WAN B.-l., DU X.-s., ZHA Z.-p., YU D.-z., QI H.-x.	Genetic Analysis and Mapping of TWH Gene in Rice Twisted Hull Mutant	Rice Science	16(1)	79-82	2009		
32344		LIU W.-q., FAN Y.-y., CHEN J., SHI Y.-f., WU J.-l.	Avoidance of Linkage Drag Between Blast Resistance Gene and the QTL Conditioning Spikelet Fertility Based on Genotype Selection Against Heading Date in Rice	Rice Science	16(1)	21-26	2009		
32345		IKEHASHI H.	Why are There Indica Type and Japonica Type in Rice? - History of the Studies and a View for Origin of Two Types	Rice Science	16(1)	1-13	2009		
32346		LI D.-h., LIU H., YANG Y.-l., ZHEN P.-p., LIANG J.-s.	Down-Regulated Expression of RACK1 Gene by RNA Interference Enhances Drought Tolerance in Rice	Rice Science	16(1)	14-20	2009		
32347		JIANG J., ZHUANG J.-y., FAN Y.-y., SHEN B.	Mapping of QTLs for Leaf Malondialdehyde Content Associated with Stress Tolerance in Rice	Rice Science	16(1)	72-74	2009		
32348		ZHANG J.-z., LIU X., LI C., XIAO K., DONG Y.-j.	Genetic Analysis and Molecular Mapping of Light-Sensitive Red-Root Mutant in Rice	Rice Science	16(1)	27-32	2009		
32349		LI Y., XU P.-z., ZHANG H.-y., FU S.-h., YANG J., ZHANG R.-q., WU X.-j.	Characterization and Genetic Analysis of a Novel Mutant mst of Rice Defective in Flower Development	Rice Science	16(1)	75-78	2009		
32350	19010998	Huang S, Taylor NL, Narsai R, Eubel H, Whelan J, Millar AH.	Experimental analysis of the rice mitochondrial proteome, its biogenesis, and heterogeneity.	Plant Physiol.	149(2)	719-734	2009		
32353	15950602	Ikeda K, Nagasawa N, Nagato Y.	ABERRANT PANICLE ORGANIZATION 1 temporally regulates meristem identity in rice.	Dev. Biol.	282(2)	349-60.	2005	APO1	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393
32354		Ganesh Kumar Agrawal, Nam-Soo Jwa, Shyam Kumar Agrawal, Shigeru Tamogami, Hitoshi Iwahashi, Randeep Rakwal	Cloning of novel rice allene oxide cyclase (OsAOC): mRNA expression and comparative analysis with allene oxide synthase (OsAOS) gene provides insight into the transcriptional regulation of octadecanoid pathway biosynthetic genes in rice	Plant Sci.	164(6)	979-992	2003	AOC,AOS1	OsAOC, AOC1, OsAOC1, HB, CPM2,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2
32355	16452146	Thomson MJ, Edwards JD, Septiningsih EM, Harrington SE, McCouch SR.	Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL.	Genetics	172(4)	2501-2514	2006	YL1	MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP
32356	17166135	Tadege M, Sheldon CC, Helliwell CA, Upadhyaya NM, Dennis ES, Peacock WJ.	Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice.	Plant Biotechnol J.	1(5)	361-9	2003	MADS50	OsMADS50, AGL20, SOC1, OsSOC1, RMADS208
32357	17185171	Xia JC, Wang YP, Ma BT, Yin ZQ, Hao M, Kong DW, Li SG	Ultrastructure and Gene Mapping of the Albino Mutant al12 in Rice (Oryza sativa L.)	Acta Genetica Sinica	33(12)	1112-1119	2006	AL12	al12
32358	20228626	Asano,K., Miyao,A., Hirochika,H., Kitano,H., Matsuoka,M. and Ashikari,M.	SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice	Proc. Jpn. Acad., Ser. B, Phys. Biol. Sci.	86(3)	265-273	2010	_	SSD1
32359	20188068	Banerjee,J. and Maiti,M.K.	Functional role of rice germin-like protein1 in regulation of plant height and disease resistance	Biochem. Biophys. Res. Commun.	394(1)	178-183	2010	GLP1	OsGLP1, GER1, GER5, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14
32361	20062805	Chen,S., Yao,H., Han,J., Liu,C., Song,J., Shi,L., Zhu,Y., Ma,X., Gao,T., Pang,X., Luo,K., Li,Y., Li,X., Jia,X., Lin,Y. and Leon,C.	Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species	PLoS ONE	5 (1)	E8613	2010		
32362	19714315	Choi,M.S., Kim,Y.H., Park,H.M., Seo,B.Y., Jung,J.K., Kim,S.T., Kim,M.C., Shin,D.B., Yun,H.T., Choi,I.S., Kim,C.K. and Lee,J.Y.	Expression of BrD1, a plant defensin from Brassica rapa, confers resistance against brown planthopper (Nilaparvata lugens) in transgenic rices	Mol. Cells	28(2)	131-137	2009		
32363	0	Costanzo,S. and Jia,Y.	Sequence variation at the rice blast resistance gene Pi-km locus: Implications for the development of allele specific markers	Plant Sci.	178(6)	523-530	2010	PIKM,PIK	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
32367	19674331	Gross,B.L., Skare,K.J. and Olsen,K.M.	Novel Phr1 mutations and the evolution of phenol reaction variation in US weedy rice (Oryza sativa)	New Phytol.	184(4)	842-850	2009	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
32368	19564155	Gu,X., Wages,C.J., Davis,K.E., Guyett,P.J. and Bar-Peled,M.	Enzymatic characterization and comparison of various poaceae UDP-GlcA 4-epimerase isoforms	J. Biochem.	146(4)	527-534	2009	_,_,_,_,_	OsUGlcAE1,OsUGlcAE2,OsUGlcAE3,OsUGlcAE4,OsUGlcAE5, UGlcAE5, OsSTA172
32370	19741004	Hirsch,C.D., Wu,Y., Yan,H. and Jiang,J.	Lineage-specific adaptive evolution of the centromeric protein CENH3 in diploid and allotetraploid Oryza species	Mol. Biol. Evol.	26(12)	2877-2885	2009	CENH3	CENH3, CenH3
32372	20003305	Jacquemin,J., Laudie,M. and Cooke,R.	A recent duplication revisited: phylogenetic analysis reveals an ancestral duplication highly-conserved throughout the Oryza genus and beyond	BMC Plant Biol	9	146	2009	LACS7,_,ZIFL5,ZIFL10,_,_,_,_,_,_,_,_,_,_,_,_,_,_	LACS7,,OsZIFL5, OsTOM2, TOM2,OsZIFL10, Os-mfs2, mfs2,,,,,,,RPL9, OsRPL9,,,,OsARAF3,,,
32374	15821864	Kant,C.R., Rao,B.J. and Sainis,J.K.	DNA binding and pairing activity of OsDmc1, a recombinase from rice	Plant Mol. Biol.	57(1)	1-11	2005	DMC1B,DMC1A	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
32375	0	Komori,T., Miyata,M., Yamamoto,T., Nitta,N., Hiei,Y., Yano,M., Ueki,J. and Komari,T.	Isolation and functional analysis of the gene controlling the stub-spreading trait in rice (Oryza sativa L.)	Plant Breeding	128(6)	568-575	2009	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
32377	0	Kushwaha,H., Gupta,N., Singh,V.K., Kumar,A. and Yadav,D.	In silico analysis of PCR amplified DOF (DNA binding with one finger) transcription factor domain and cloned genes from cereals and millets	Online J Bioinform	9(2)	130-143	2008		
32378	19958136	Lee,J.H., Muhsin,M., Atienza,G.A., Kwak,D.Y., Kim,S.M., De Leon,T.B., Angeles,E.R., Coloquio,E., Kondoh,H., Satoh,K., Cabunagan,R.C., Cabauatan,P.Q., Kikuchi,S., Leung,H. and Choi,I.R.	Single nucleotide polymorphisms in a gene for translation initiation factor (eIF4G) of rice (Oryza sativa) associated with resistance to Rice tungro spherical virus	Mol. Plant Microbe Interact.	23(1)	29-38	2010	_	eIF4Gtsv1, tsv1, eIF4G
32379	16215849	Li,K.G., Yang,J.S., Attia,K., Su,W., He,G.M. and Qian,X.Y.	Cloning and characterization of OsORC2, a new member of rice origin recognition complex	Biotechnol. Lett.	27(18)	1355-1359	2005	ORC2	OsORC2
32381	18726469	Liu,G., Yan,C., Zhai,W., He,P., Yang,J., Li,X. and Zhu,L.	Amplification, analysis and chromosome mapping of novel homeobox-containing and homeobox-flanking sequences in rice	Sci. China, C, Life Sciences	42(2)	162-170	1999	HOS66,OSH10,OSH15,OSH1	HB365, KNAT7,OsH10, H10, HB412,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
32382	15960615	Liu,H., Wang,S., Yu,X., Yu,J., He,X., Zhang,S., Shou,H. and Wu,P.	ARL1, a LOB-domain protein required for adventitious root formation in rice	Plant J.	43(1)	47-56	2005	CRL1	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
32384	18758715	Liu,Z., Wang,J., Wang,Q., Huang,X., Xu,W., Zhu,L., He,P. and Fang,R.	Structure, expression pattern and chromosomal localization of the rice Osgrp-2 gene	Sci. China, C, Life Sciences	46(6)	584-594	2003	_	GRP, Osgrp-2, OsGRP-2, GRCWP
32386	18726210	Meng,Z., Liu,G., Xu,Z., Tang,G., Wang,N., Chen,R. and Zhu,L.	Structural and functional analysis of a MADS box containing genomic DNA sequence cloned from rice	Sci. China, C, Life Sciences	41(6)	561-568	1998	_	RgMADS1
32387	0	Pedro,P.M.	The impact of habitat fragmentation on a forest-exclusive species of Sabethes mosquito.	PhD Thesis  University of Leeds			2004		
32389	0	Rho,H.S., Heo,J.B., Bang,W.Y., Hwang,S.M., Nahm,M.Y., Kwon,H.J., Kim,S.W., Lee,B.H. and Bahk,J.D.	The role of OsPRA1 in vacuolar trafficking by OsRab GTPases in plant system	Plant Sci.	177(5)	411-417	2009	_,_,_,_,_,_,GLUP4	OsRab11D1, OsRab11, Rab11, ric2,OsPRA1,OsRab1C3, OsRab1,OsRab2A1, OsRab2,OsRab5A1, OsRab5b, Rab5b,OsRab7B3, Rab7B3, OsRab7, Rab7,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a
32390	20220098	Sugimoto,K., Takeuchi,Y., Ebana,K., Miyao,A., Hirochika,H., Hara,N., Ishiyama,K., Kobayashi,M., Ban,Y., Hattori,T. and Yano,M.	Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice	Proc. Natl. Acad. Sci. U.S.A.	107(13)	5792-5797	2010	VP1,PIP1;3,GA20OX1,EXPB3,SDR4,_,_,_,PIP2;2	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsEXPB3, osaEXPb1.10, EXPb1.10,Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L ,OsDOG1L-1,OsDOG1L-3,OsDOG1L-2, DOG1L-2,OsPIP2;2, PIP2-2, OsPIP2-3
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32397	20154151	Wang,M., Wang,K., Tang,D., Wei,C., Li,M., Shen,Y., Chi,Z., Gu,M. and Cheng,Z.	The central element protein ZEP1 of the synaptonemal complex regulates the number of crossovers during meiosis in rice	Plant Cell	22(2)	417-430	2010	PAIR2,RMC1,ZEP1,RAD21-4	Pair2, OsPAIR2, OsASY1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsZEP1,OsRad21-4, REC8, OsREC8, OsRAD21-4
32398	20080642	Yamagata,Y., Yamamoto,E., Aya,K., Win,K.T., Doi,K., Sobrizal, Ito,T., Kanamori,H., Wu,J., Matsumoto,T., Matsuoka,M., Ashikari,M. and Yoshimura,A.	Mitochondrial gene in the nuclear genome induces reproductive barrier in rice	Proc. Natl. Acad. Sci. U.S.A.	107(4)	1494-1499	2010	RPL27-3,RPL27-2,RPL27-1	rpl27-3, rpl27, mtRPL27a,rpl27-2, rpl27, mtRPL27a, S27,rpl27-1, rpl27, mtRPL27b, S27
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32405	0	K. Himabindu, K. Suneetha, V.S.A.K. Sama, J.S. Bentur	A new rice gall midge resistance gene in the breeding line@CR57-MR1523, mapping with flanking markers and development@of NILs.	Euphytica	174	179-187	2010	GM11	Gm11t, Gm11(t), Gm11
32406	0	M.N. Shrivastava, Arvind Kumar, Sandeep Bhandarkar,B.C. Shukla and K.C. Agrawal	A new gene for resistance in rice to Asian rice gall midge@(Orseolia oryzae Wood Mason) biotype 1 population at Raipur, India	Euphytica	130	143-145	2003	GM9	Gm9, Gm9(t)
32407		K. Renganayaki, Allan K. Fritz, S. Sadasivam, Sujata Pammi, Sandra E. Harrington, Susan R. McCouch, S. Mohan Kumar and Avutu Sam Reddy	Mapping and Progress toward Map-Based Cloning of Brown Planthopper Biotype-4@Resistance Gene Ingrogressed from Oryza officinalis into Cultivated Rice, O. sativa	Crop Sci.	42	2112-2117	2002	BPH13	Bph13(t)
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32409	20305120	Hui Zhang, Wanqi Liang, Xijia Yang, Xue Luo, Ning Jiang, Hong Ma, and Dabing Zhang.	Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development.	Plant Cell	22	672-689	2010	MST8,CSA	OsMST8, OSMST8,csa
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32470		Maekawa-M, Tsugane-K, Iida-S.	Chromosomal location of an autonomous element for transposition of nDart, a DNA trasnposon in rice	Breeding Research	vol. 6 (Suppl.2)	63	2004	NDART1	nDart, nDART1, nDART
32471	11470159	Washio K.	Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.	Biochim. Biophys. Acta	1520(1)	54-62.	2001	RPBF,DOF4,RDD1,DOF1,DOF5	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsDof4, OsDof8, Dof8, OsDof-8, DOF8,OsDof2, OsDof9, Dof9, OsDof-9 ,OsDof1,OsDof5
32472	12877745	Lijavetzky D, Carbonero P, Vicente-Carbajosa J.	Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families.	BMC Evol. Biol.	3	17.	2003	RDD1,DOF17,DOF22,_,_,_,DOF24,DOF14,RDD2,DOF6,DOF7,DOF11,DOF13,DOF16,DOF18,DOF19,DOF20,DOF21,DOF25,DOF28,DOF29,DOF27,DOF30,_,_,DOF4,SP3,RDD4,RPBF,RDD3	OsDof2, OsDof9, Dof9, OsDof-9 ,OsDof17, Dof17, OsDof-17 ,OsDof22, Dof22, OsDof-22,OsDof4, Dof4, OsDof-4, Dof-4,OsDof, OsDof2, Dof2, OsDof-2,OsDof1, Dof1, OsDof-1,OsDof24, Dof24, OsDof-24,OsDof14, Dof14, OsDof-14 ,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3,OsDof6, Dof6, OsDof-6,OsDof7, Dof7, OsDof-7,OsDof11, Dof11, OsDof-11 ,OsDof13, Dof13, OsDof-13,OsDof16, Dof16, OsDof-16,OsDof18, Dof18, OsDof-18,OsDof19, Dof19, OsDof-19 ,OsDof20, Dof20, OsDof-20 ,OsDof21, Dof21, OsDof-21, OsCDF2, CDF2 ,OsDof25, Dof25, OsDof-25 ,OsDof28, Dof28, OsDof-28 ,OsDof29, Dof29, OsDof-29 ,OsDof27, Dof27, OsDof-27,OsDof30, Dof30, OsDof-30 ,OsDof5, Dof5, OsDof-5,OsDof3, Dof3, OsDof-3,OsDof4, OsDof8, Dof8, OsDof-8, DOF8,OsDof15, Dof15, OsDof-15, DOF15,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsDof26, Dof26, OsDof-26
32473	20057139	Konishi T, Miyazaki Y, Yamakawa S, Iwai H, Satoh S, Ishii T.	Purification and biochemical characterization of recombinant riceUDP-arabinopyranose mutase generated in insect cells.	Biosci. Biotechnol. Biochem.	74(1)	191-4.	2010	UAM2,UAM1,UAM3	OsUAM2,OsUAM1, RGP-1, Osgls1,OsUAM3
32474	17182701	Konishi T, Takeda T, Miyazaki Y, Ohnishi-Kameyama M, Hayashi T, O'Neill MA, Ishii T.	A plant mutase that interconverts UDP-arabinofuranose and UDP-arabinopyranose.	Glycobiology	17(3)	345-54.	2007	UAM2,UAM3,UAM1	OsUAM2,OsUAM3,OsUAM1, RGP-1, Osgls1
32475	16537113	Louis-Philippe Hamel, Marie-Claude Nicole, Somrudee Sritubtim,Marie-JoseLe Morency, Margaret Ellis, Juergen Ehlting,Nathalie Beaudoin Brad Barbazuk, Dan Klessig, Justin Lee,Greg Martin, John Mundy, Yuko Ohashi, Dierk Scheel, Jen Sheen,Tim Xing, Shuqun Zhang, Armand Seguin and Brian E. Ellis	Ancient signals: comparative genomics of plant MAPK and MAPKK gene families	Trends Plant Sci.	11	192-8	2006	MKK3,SMG1,MKK10-1,MKK1,MKK6,MKK10-2,MKK5	OsMKK3,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsMKK10-1, MPKK10.1 ,OsMKK1, OsMEK2,OsMKK6, OsMEK1,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMPKK10-2D, MPKK10-2D, MPKK10.2,OsMKK5, BUD1, OsBUD1
32476		Khun LH., Miyaji S., Motomura K., Murayama S., Adaniya S., Nose A	Trisomic analysis of new gene for late heading in rice, Oryza sativa L.	Euphytica	151	235-241	2006	EF6	ef6
32477		M. Gowda, S.Roy-Barman and B.B.Chattoo	Molecular mapping of a novel blast resistance gene Pi38 in rice using SSLP and AFLP markers	Plant Breeding	125	596-599	2006	PI38	Pi38, Pi-38
32478		Deen, R., K. Ramesh, S.K. Gautam, Y.K. Rao, V.J. Lakshmi, B.C. Viraktamath,D.S. Brar and T. Ram	Identification of new gene for BPH resistance introgressed O. rufipogon.	RGN	25	70-71	2010	BPH24,BPH23	Bph24(t),Bph23(t)
32479		Ram, T., R. Deen, S.K. Gautam, K. Ramesh, Y.K. Rao and D.S. Brar	Identification of new genes for brown planthopper resistance in rice introgressed from O. glaberrima and O. minuta.	RGN	25	67-68	2010		
32482	19819927	Scafaro A.P., Haynes P.A., Atwell B.J.	Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice	Journal of Experimental Botany	61	191-202	2010		
32485	19858118	Jagadish S.V.K., Muthurajan R., Oane R., Wheeler T.R., Heuer S., Bennett J., Craufurd P.Q.	Physiological and proteomic approaches to address heat tolerance during anthesis in rice (Oryza sativa L.)	Journal of Experimental Botany	61	143-156	2010		
32489	19921249	Guo J., Wang F., Song J., Sun W., Zhang X.S.	The expression of Orysa;CycB1;1 is essential for endosperm formation and causes embryo enlargement in rice	Planta.	231	293-303	2010	CYCB1;1	CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm
32494	19933315	Mizutani M., Naganuma T., Tsutsumi K.-I., Saitoh Y.	The syncytium-specific expression of the Orysa;KRP3 CDK inhibitor: Implication of its involvement in the cell cycle control in the rice (Oryza sativa L.) syncytial endosperm	Journal of Experimental Botany	61	791-798	2010	CYCD2;1,KRP3,KRP5,CYCA1;1,CDC2-2,CDKB2;1 ,CYCB2;2,KRP1,KRP4,CDC2-1,KRP6	CycD2;1, CYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1 ,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6
32495	19939835	Haro R., Banuelos M.A., Rodriguez-Navarro A.	High-affinity sodium uptake in land plants	Plant Cell Physiol.	51	68-79	2010		
32502	20018899	Zang A., Xu X., Neill S., Cai W.	Overexpression of OsRAN2 in rice and Arabidopsis renders transgenic plants hypersensitive to salinity and osmotic stress	Journal of Experimental Botany	61	777-789	2010	_	OsRAN2, RAN2
32503	20022921	Mao X., Zhang H., Tian S., Chang X., Jing R.	TaSnRK2.4, an SNF1-type serine/threonine protein kinase of wheat (Triticum aestivum L.), confers enhanced multistress tolerance in Arabidopsis	Journal of Experimental Botany	61	683-696	2010		
32504	20022924	Ishikawa S., Abe T., Kuramata M., Yamaguchi M., Ando T., Yamamoto T., Yano M.	A major quantitative trait locus for increasing cadmium-specific concentration in rice grain is located on the short arm of chromosome 7	Journal of Experimental Botany	61	923-934	2010		
32509	20080824	Wang J,Gao X,Li L,Shi X,Zhang J,Shi Z	Overexpression of Osta-siR2141 caused abnormal polarity establishment and retarded growth in rice.	J. Exp. Bot.	61	1885-95	2010		
32510	20081045	Secco D,Baumann A,Poirier Y	Characterization of the rice PHO1 gene family reveals a key role for OsPHO1;2 in phosphate homeostasis and the evolution of a distinct clade in dicotyledons.	Plant Physiol.	152	1693-704	2010	PHO1;2 CIS-NAT,PHO1;3,PHO1;1 CIS-NAT,PHO1;3 CIS-NAT,PHO1;2,PHO1;1	OsPHO1;2 cis-NAT, cis-NAT PHO1;2,OsPHO1;3, OsPHT1,OsPHO1;1 cis-NAT,OsPHO1;3 cis-NAT,OsPHO1;2,OsPHO1;1
32511	20097791	Mustroph A,Lee SC,Oosumi T,Zanetti ME,Yang H,Ma K,Yaghoubi-Masihi A,Fukao T,Bailey-Serres J	Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses.	Plant Physiol.	152	1484-500	2010		
32512	20100339	Yun K.-Y., Park M.R., Mohanty B., Herath V., Xu F., Mauleon R., Wijaya E., Bajic V.B., Bruskiewich R., de los Reyes B.G.	Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress	BMC Plant Biol		16	2010		
32513	20107022	Jung KH,Seo YS,Walia H,Cao P,Fukao T,Canlas PE,Amonpant F,Bailey-Serres J,Ronald PC	The submergence tolerance regulator Sub1A mediates stress-responsive expression of AP2/ERF transcription factors.	Plant Physiol.	152	1674-92	2010	DREB1A,SUB1B,DREB1C,SUB1C,FZP,EREBP1,EBP-89,DREB1B,ERF3	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
32514	20109239	Jain M., Ghanashyam C., Bhattacharjee A.	Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses	BMC Genomics	11	73	2010	GSTF10,GSTU33,GSTU34,GSTU38,GSTU36,GSTU40,GSTU41,GSTU43,GSTU45,GSTU46,GSTU48,GSTZ4,GSTZ3,TCHQD1,GSTF15,EF1G2,GSTF2,GSTU11,GSTF12,GSTU13,GSTU28,GSTU9,GSTU14,GSTU4,DHAR2,GSTU20,GSTZ1,GSTU32,GSTU31,RPP31,GSTU22,GSTF3,GSTU25,GSTU27,GSTU17,GSTU49,GSTU8,GSTU37,GSTU42,GSTU26,GSTU30,GSTU3,GSTU7,GSTF16,GSTF14,GSTU2,GSTU50,GSTU5,GSTU15,GSTU1,GSTU18,GSTU47,GSTU12,GSTU19,GSTU35,GSTU39,GSTU52,GSTZ2,GSTU51,DHAR1,GSTU24,GSTU44,GSTF1,GSTF7,GSTF4,GSTF8,GSTF9,GSTF13,GSTU23,GSTT1,GSTF17,GSTU6,GSTU21,GSTU16,GSTF5,EEF1BG,GSTU10,GSTF11	OsGSTF10,OsGSTU33,OsGSTU34,OsGSTU38,OsGSTU36,OsGSTU40,OsGSTU41,OsGSTU43,OsGSTU45,OsGSTU46,OsGSTU48,OsGSTZ4,OsGSTZ3,OsTCHQD1,OsGSTF15,OsEF1G2,OsGSTF2, RGSTII,OsGSTU11,OsGSTF12, OsEnS-7,OsGSTU13,OsGSTU28,OsGSTU9,OsGSTU14,OsGSTU4,OsDHAR2,OsGSTU20,OsGSTZ1, GSTZ-1,OsGSTU32,OsGSTU31,OsRPP31, OsGSTF6, GSTF6,OsGSTU22,OsGSTF3, gstf3,OsGSTU25,OsGSTU27,OsGSTU17, OsGST23, GST23 ,OsGSTU49,OsGSTU8, OsGST35, GST35,OsGSTU37,OsGSTU42,OsGSTU26,OsGSTU30,OsGSTU3, OsGSTU29, GSTU29,OsGSTU7,OsGSTF16,OsGSTF14, GST14,OsGSTU2, ParC,OsGSTU50,OsGSTU5,OsGSTU15,OsGSTU1,OsGSTU18, OsGSTU7, GSTU7,OsGSTU47,OsGSTU12, OsGSTU6.2, GSTU6.2,OsGSTU19, GSTU6, OsGSTU6.1, GSTU6.1,OsGSTU35,OsGSTU39,OsGSTU52,OsGSTZ2, GSTZ-2,OsGSTU51,OsDHAR1, DHAR, cytDHAR, OsDHAR,OsGSTU24,OsGSTU44,OsGSTF1, RGSI,OsGSTF7,OsGSTF4,OsGSTF8,OsGSTF9,OsGSTF13,OsGSTU23,OsGSTT1,OsGSTF17,OsGSTU6,OsGSTU21,OsGSTU16,OsGSTF5, OsGST F5,eEF1Bgamma, EF-1gamma, OsEF1G1, EF1G1,OsGSTU10,OsGSTF11, OsGST4
32515	20122142	Zhou Y.-L., Xu M.-R., Zhao M.-F., Xie X.-W., Zhu L.-H., Fu B.-Y., Li Z.-K.	Genome-wide gene responses in a transgenic rice line carrying the maize resistance gene Rxo1 to the rice bacterial streak pathogen, Xanthomonas oryzae pv. oryzicola	BMC Genomics	11	78	2010		
32516	20130099	Su CF,Wang YC,Hsieh TH,Lu CA,Tseng TH,Yu SM	A novel MYBS3-dependent pathway confers cold tolerance in rice.	Plant Physiol.	153	145-58	2010	DREB1A,_,WRKY77,AMY3D,MDR7,TPP2,TPP1,DREB1B	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsMYBS3, MYBS3,OsWRKY77, WRKY-77,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11,OsTPP2,OsTPP1, OsTPS,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C
32517	20130100	De Vleesschauwer D,Yang Y,Cruz CV,Hofte M	Abscisic acid-induced resistance against the brown spot pathogen Cochliobolus miyabeanus in rice involves MAP kinase-mediated repression of ethylene signaling.	Plant Physiol.	152	2036-52	2010		
32518	20135324	Gao P,Bai X,Yang L,Lv D,Li Y,Cai H,Ji W,Guo D,Zhu Y	Over-expression of osa-MIR396c decreases salt and alkali stress tolerance.	Planta.	231	991-1001	2010		
32519	20141629	Singh A., Singh U., Mittal D., Grover A.	Genome-wide analysis of rice ClpB/HSP100, ClpC and ClpD genes	BMC Genomics	11	95.	2010	HSP101,ERD1,CLPC1,CLPC4,CLPC2,CLPC3,CLPB-M,CLPB-C,CLPD2	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 ,ClpC1,ClpC4,ClpC2,ClpC3,ClpB-m, OsClpB-m,ClpB-c, OsClpB-c,ClpD2, OsClpD2 
32520	20167122	Sakai H., Itoh T.	Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis	BMC Genomics	11	121.	2010		
32521	20193092	Das S., Sen S., Chakraborty A., Chakraborti P., Maiti M.K., Basu A., Basu D., Sen S.K.	An unedited 1.1 kb mitochondrial orfB gene transcript in the wild abortive cytoplasmic male sterility (WA-CMS) system of Oryza sativa L. subsp. indica.	BMC Plant Biol	10	39-	2010	_,_,_,_	atp9, RMtATP9, aatp9,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,orfB, atp8 ,atpA, RMtATPa 
32522	20213122	Ray S,Patra B,Das-Chatterjee A,Ganguli A,Majumder AL	Identification and organization of chloroplastic and cytosolic L-myo-inositol 1-phosphate synthase coding gene(s) in Oryza sativa: comparison with the wild halophytic rice, Porteresia coarctata.	Planta.	231	1211-27	2010	INO2,INO1	OsINO2, RINO2, OsINO1-2,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
32523	20214804	Tam P.P., Barrette-Ng I.H., Simon D.M., Tam M.W., Ang A.L., Muench D.G.	The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization.	BMC Plant Biol	10	44	2010		
32524	20222994	Bernard V., Brunaud V., Lecharny A.	TC-motifs at the TATA-box expected position in plant genes: A novel class of motifs involved in the transcription regulation	BMC Genomics	11	166	2010		
32525	20231330	Kim JY,Kim WY,Kwak KJ,Oh SH,Han YS,Kang H	Glycine-rich RNA-binding proteins are functionally conserved in Arabidopsis thaliana and Oryza sativa during cold adaptation process.	J. Exp. Bot.	61	2317-25	2010	GRP6,GRP3,GRP1,GRP2,GRP4,GRP5	OsGRP6, GRRBP7,OsGRP3, RTP, RBP-152 ,OsGRP1,OsGRP2,OsGRP4,OsGRP5
32526	20298594	Romeuf I., Tessier D., Dardevet M., Branlard G., Charmet G., Ravel C.	WDBTF: An integrated database resource for studying wheat transcription factor families	BMC Genomics	11	185	2010		
32527	20335401	Jeong JS,Kim YS,Baek KH,Jung H,Ha SH,Do Choi Y,Kim M,Reuzeau C,Kim JK	Root-specific expression of OsNAC10 improves drought tolerance and grain yield in rice under field drought conditions.	Plant Physiol.	153	185-97	2010	NAC122	OsNAC10, NAC10, ONAC122, NAC122
32528	20346185	Fujii S., Kazama T., Yamada M., Toriyama K.	Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes	BMC Genomics	11	209	2010	RPS2,_,_,_,_,_,RPS1,_,_,_	rps2, rps2a, rps2b,ORF79, orf79,rpl5, rpl5-1,orf152b, orf152b-1, orf152,orf224, orf224a, orf224b,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,rps1, rps1a, rps1b, rps1-1,cox3, coxIII, cox3a, cox3b, cox3c,orf288, LD-orf310,atp1, atp1-1, ATP1
32529	20353606	Narsai R,Ivanova A,Ng S,Whelan J	Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets.	BMC Plant Biol	10	56	2010		
32530	20357136	Hinz M,Wilson IW,Yang J,Buerstenbinder K,Llewellyn D,Dennis ES,Sauter M,Dolferus R	Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival.	Plant Physiol.	153	757-72	2010		
32531	20357140	Kurusu T,Hamada J,Nokajima H,Kitagawa Y,Kiyoduka M,Takahashi A,Hanamata S,Ohno R,Hayashi T,Okada K,Koga J,Hirochika H,Yamane H,Kuchitsu K	Regulation of microbe-associated molecular pattern-induced hypersensitive cell death, phytoalexin production, and defense gene expression by calcineurin B-like protein-interacting protein kinases, OsCIPK14/15, in rice cultured cells.	Plant Physiol.	153	678-92	2010	CBL6,KS7,CPS2,CHT1,CIPK14,CPS4,CIPK15,KS4,PR10A,CBL2,CBL3,CBL4,CBL5	OsCBL6,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsCIPK14,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsCIPK15,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCBL2,OsCBL3,OsCBL4, SOS3, OsSOS3,OsCBL5
32532	20395452	Gao X,Liang W,Yin C,Ji S,Wang H,Su X,Guo C,Kong H,Xue H,Zhang D	The SEPALLATA-like gene OsMADS34 is required for rice inflorescence and spikelet development.	Plant Physiol.	153	728-40	2010		
32533	20421194	Ohara K,Sasaki K,Yazaki K	Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa.	J. Exp. Bot.	61(10)	2683-92.	2010	_,_,_,GGPPS1,GGPPS2,_,_	OsFPPS3,OsFPPS2, FPPS2,OsSPS2, SPS2,OsGGPPS1,OsGGPPS2, OsGRP, GRP ,OsFPPS1, FPPS1, FPPS, OsFPS,OsSPS1, SPS1
32534	20423940	Ma H,Zhao J	Genome-wide identification, classification, and expression analysis of the arabinogalactan protein gene family in rice (Oryza sativa L.).	J. Exp. Bot.	61(10)	2647-68	2010	FLA7,FLA27,AGP9,FLA20,FLA9,FLA12,FLA21,FLA22,FLA23,AGP30,AGP15,AGP25,AGP27,FLA4,FLA8,FLA11,FLA15,FLA17,FLA24,FLA25,AGP2,AGP4,AGP5,AGP8,AGP12,AGP14,AGP18,AGP22,AGP24,AGP28,_,_,_,_,FLA5,FLA6,AGP3,FLA19,FLA13,FLA10,AGP7,ENODL6,AGP16,AGP29,_,FLA14,AGP31,FLA26,AGP11,_,FLA3,AGP20,_,AGP23,AGP17,AGP19,_,AGP1,FLA18,AGP6,AGP10,AGP21,FLA1,AGP13,FLA16,FLA2,ENODL18,ENODL1,AGP26	OsFLA7,OsFLA27,OsAGP9,OsFLA20,OsFLA9,OsFLA12,OsFLA21,OsFLA22,OsFLA23,OsAGP30,OsAGP15,OsAGP25,OsAGP27,OsFLA4,OsFLA8,OsFLA11,OsFLA15,OsFLA17,OsFLA24,OsFLA25,OsAGP2,OsAGP4,OsAGP5,OsAGP8,OsAGP12,OsAGP14, OsAGPEP2,OsAGP18,OsAGP22,OsAGP24,OsAGP28,OsLLA2, OsLTPG27, LLA2, LTPG27,OsLLA4, LLA4,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21,OsFLA5,OsFLA6,OsAGP3,OsFLA19,OsFLA13,OsFLA10,OsAGP7,OsENODL6, OsELA2, ELA2, OsEnS-24,OsAGP16,OsAGP29,OsLLA5, LLA5,OsFLA14,OsAGP31,OsFLA26,OsAGP11,OsLLA8, LLA8,OsFLA3,OsAGP20,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsAGP23,OsAGP17,OsAGP19, OsAGPEP1,OsLLA3, LLA3,OsAGP1,OsFLA18,OsAGP6,OsAGP10,OsAGP21,OsFLA1,OsAGP13,OsFLA16,OsFLA2,OsENODL18, OsELA3, ELA3 ,OsENODL1, OsELA1, ELA1,OsAGP26
32535	20441221	Emami K,Morris NJ,Cockell SJ,Golebiowska G,Shu QY,Gatehouse AM	Changes in protein expression profiles between a low phytic acid rice ( Oryza sativa L. Ssp. japonica) line and its parental line: a proteomic and bioinformatic approach.	J. Agric. Food Chem.	58	6912-22	2010		
32536	20472577	Quinet M,Ndayiragije A,Lefevre I,Lambillotte B,Dupont-Gillain CC,Lutts S	Putrescine differently influences the effect of salt stress on polyamine metabolism and ethylene synthesis in rice cultivars differing in salt resistance.	J. Exp. Bot.	61(10)	2719-33	2010	PAOA,_,ADC1,ODCA,ADC2,ODCB,PAOB	PAOa, OsPAO2, PAO2, OsPAOa,DAO,OsADC1, ARGDC, ADC, OsAdc1,ODCa, OsODC1, ODC1 ,ADCa, OsAdc2, OsADC2,ODCb, OsODC3, ODC3,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2
32537	20472752	Carretero-Paulet L,Galstyan A,Roig-Villanova I,Martinez-Garcia JF,Bilbao-Castro JR,Robertson DL	Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.	Plant Physiol.	153(3)	1398-412	2010		
32538	20484022	Wang P,Gao J,Wan C,Zhang F,Xu Z,Huang X,Sun X,Deng X	Divinyl chlorophyll(ide) a can be converted to monovinyl chlorophyll(ide) a by a divinyl reductase in rice.	Plant Physiol.	153(3)	994-1003	2010	_	OsDVR, DVR
32539	20487558	Zhao X,Huang J,Yu H,Wang L,Xie W	Genomic survey, characterization and expression profile analysis of the peptide transporter family in rice (Oryza sativa L.).	BMC Plant Biol	10	92	2010		
32540	20507633	Wei LQ,Xu WY,Deng ZY,Su Z,Xue Y,Wang T	Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa.	BMC Genomics	11	338	2010		
32542		Telebanco-Yanoria M.J., Koide Y., Fukuta Y., Imbe T., Tsunematsu H., Kato H., Ebron L.A., Nguyen T.M.N., Kobayashi N.	A set of near-isogenic lines of Indica-type rice variety CO 39 as differential varieties for blast resistance	Molecular Breeding		1-17	2010	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
32544		Devi T.A., Sarla N., Siddiq E.A., Sirdeshmukh R.	Activity and expression of adenosine diphosphate glucose pyrophosphorylase in developing rice grains: Varietal differences and implications on grain filling	Plant Science	178	123-129	2010		
32545		Faivre-Rampant O., Bruschi G., Abbruscato P., Cavigiolo S., Picco A.M., Borgo L., Lupotto E., Piffanelli P.	Assessment of genetic diversity in Italian rice germplasm related to agronomic traits and blast resistance (Magnaportheoryzae)	Molecular Breeding		1-14	2010		
32546		Piao Z., Li M., Li P., Zhang J., Zhu C., Wang H., Luo Z., Lee J., Yang R.	Bayesian dissection for genetic architecture of traits associated with nitrogen utilization efficiency in rice	African Journal of Biotechnology	8	6834-6839	2009		
32547	20385545	Larre C., Penninck S., Bouchet B., Lollier V., Tranquet O., Denery-Papini S., Guillon F., Rogniaux H.	Brachypodium distachyon grain: Identification and subcellular localization of storage proteins	Journal of Experimental Botany	61	1771-1783	2010		
32548		Wei X., Liu L., Xu J., Jiang L., Zhang W., Wang J., Zhai H., Wan J.	Breeding strategies for optimum heading date using genotypic information in rice	Molecular Breeding	25(2)	287-298	2010		
32549		Negrao S., Palaniappan J., Maroco J., Lourenco T., Mackill D., Oliveira M.M.	Bridging sd1 molecular knowledge with recent breeding strategies for the improvement of traditional rice varieties - A Japonica case-study	African Journal of Biotechnology	9	2192-2200	2010		
32550	20305271	Nakamura Y., Utsumi Y., Sawada T., Aihara S., Utsumi C., Yoshida M., Kitamura S.	Characterization of the reactions of starch branching enzymes from rice endosperm	Plant Cell Physiol.	51	776-794	2010		
32553		Liu T., Zhang Y., Xue W., Xu C., Li X., Xing Y.	Comparison of quantitative trait loci for 1,000-grain weight and spikelets per panicle across three connected rice populations	Euphytica	175	383-394	2010		
32554		Rafique M.Z., Zia M., Rashid H., Chaudhary M.F., Chaudhry Z.	Comparison of transgenic plant production for bacterial blight resistance in Pakistani local rice (Oryza sativa L.) cultivars	African Journal of Biotechnology	9	1892-1904	2010		
32555		Zhu T., Wang W., Wong H.-L., Yang X., Wang K., Cui Z.	Construction of gateway-compatible yeast two-hybrid vectors for high throughput analysis of protein interaction	African Journal of Biotechnology	9	1392-1396	2010		
32556	20145904	Hori K., Sugimoto K., Nonoue Y., Ono N., Matsubara K., Yamanouchi U., Abe A., Takeuchi Y., Yano M.	Detection of quantitative trait loci controlling pre-harvest sprouting resistance by using backcrossed populations of japonica rice cultivars	Theor. Appl. Genet.	120	1547-57	2010	qLTG-3-1(t)	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5
32558		Chen M.-H., Fjellstrom R.G., Christensen E.F., Bergman C.J.	Development of three allele-specific codominant rice Waxy gene PCR markers suitable for marker-assisted selection of amylose content and paste viscosity	Molecular Breeding	26(3)	513-523	2010		
32559	20012086	Piston F., Uauy C., Fu L., Langston J., Labavitch J., Dubcovsky J.	Down-regulation of four putative arabinoxylan feruloyl transferase genes from family PF02458 reduces ester-linked ferulate content in rice cell walls	Planta.	231	677-691	2010	AT7,AT8,AT9,AT10	OsAT7, OsAt7,OsAT8, OsAt8,OsAT9, OsAt9,OsAT10, OsAt10
32560		Wang Y., Zha X., Zhang S., Qian X., Dong X., Sun F., Yang J.	Down-regulation of the OsPDCD5 gene induced photoperiod-sensitive male sterility in rice	Plant Science	178	221-228	2010		
32562		Hakim M.A., Juraimi A.S., Begum M., Hanafi M.M., Ismail M.R., Selamat A.	Effect of salt stress on germination and early seedling growth of rice (Oryza sativa L.)	African Journal of Biotechnology	9	1911-1918	2010		
32563		Hu H., You J., Fang Y., Zhu X., Qi Z., Xiong L.	Erratum to Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice (Plant Mol Biol, (2008), 67, (169-181), 10.1007/s11103-008-9309-5)	Plant Mol. Biol.	72	567-568	2010		
32564		Chin J.H., Lu X., Haefele S.M., Gamuyao R., Ismail A., Wissuwa M., Heuer S.	Erratum to Development and application of gene-based markers for the major rice QTL Phosphorus uptake 1 (Theor Appl Genet, 10.1007/s00122-009-1235-7)	Theor. Appl. Genet.	120	1087-1088	2010		
32565		Ishimoto M., Rahman S.M., Hanafy M.S., Khalafalla M.M., El-Shemy H.A., Nakamoto Y., Kita Y., Takanashi K., Matsuda F., Murano Y., Funabashi T., Miyagawa H., Wakasa K.	Evaluation of amino acid content and nutritional quality of transgenic soybean seeds with high-level tryptophan accumulation	Molecular Breeding	25(2)	313-326	2010		
32566		Sikdar Md.S.I., Kim J.-S.	Expression of a natural fusion gene for uracil phosphoribosyltransferase and uridine kinase from rice shows growth retardation by 5-fluorouridine or 5-fluorouracil in Escherichia coli	African Journal of Biotechnology	9	1295-1303	2010		
32567	20512559	Zhou L., Zeng Y., Zheng W., Tang B., Yang S., Zhang H., Li J., Li Z.	Fine mapping a QTL qCTB7 for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line	Theor. Appl. Genet.	121	895-905	2010		
32568	19946705	Wang Y., Zhong Z.Z., Zhao Z.G., Jiang L., Bian X.F., Zhang W.W., Liu L.L., Ikehashi H., Wan J.M.	Fine mapping of a gene causing hybrid pollen sterility between Yunnan weedy rice and cultivated rice (Oryza sativa L.) and phylogenetic analysis of Yunnan weedy rice	Planta.	231	559-570	2010		
32569		Zhu J., Zhou Y., Liu Y., Wang Z., Tang Z., Yi C., Tang S., Gu M., Liang G.	Fine mapping of a major QTL controlling panicle number in rice	Molecular Breeding		1-10	2010		
32570		Chi X.-F., Zhou X.-S., Shu Q.-Y.	Fine mapping of a xantha mutation in rice (Oryza sativa L.)	Euphytica	172	215-220	2010		
32571		Uga Y., Okuno K., Yano M.	Fine mapping of Sta1, a quantitative trait locus determining stele transversal area, on rice chromosome 9	Molecular Breeding	26(3)	533-538	2010		
32572		Obara M., Tamura W., Ebitani T., Yano M., Sato T., Yamaya T.	Fine-mapping of qRL6.1, a major QTL for root length of rice seedlings grown under a wide range of NH<sub>4</sub><sup>+</sup> concentrations in hydroponic conditions	Theor. Appl. Genet.	121	535-547	2010		
32573		Kongprakhon P., Cuesta-Marcos A., Hayes P.M., Hongtrakul V., Sirithunya P., Toojinda T., Sangduen N.	Four QTL in Rice associated with broad spectrum resistance to blast isolates from Rice and Barley	J. Phytopathol.	158	125-131	2010		
32574		Sikdar Md.S.I., Kim J.-S.	Functional analysis of a gene encoding threonine synthase from rice	African Journal of Biotechnology	9	1122-1129	2010		
32575		Bal E.B.B., Bay S.	Genetic analysis of Turkish rice varieties (Oryza sativa L.) using seed storage proteins and RAPD markers	European Food Research and Technology	230	609-617	2010		
32576	20155410	Ingvardsen C.R., Xing Y., Frei U.K., Lubberstedt T.	Genetic and physical fine mapping of Scmv2, a potyvirus resistance gene in maize	Theor. Appl. Genet.	120	1621-34	2010		
32577		Kumar P., Pathania S., Katoch P., Sharma T.R., Plaha P., Rathour R.	Genetic and physical mapping of blast resistance gene Pi-42(t) on the short arm of rice chromosome 12	Molecular Breeding	25(2)	217-228	2010	PI42	Pi42(t), Pi-42(t)
32578		Zhou J., Xu P., Deng X., Li J., Hu F., Ren G., Zhang Z., Luan Y., Deng W., Zhao Z., Jiang L., Wan J., Tao D.	Genetic dissection of a chromosomal region conferring hybrid sterility using multi-donors from Oryza glaberrima	Euphytica	175	395-407	2010		
32579	20364375	Jin L., Lu Y., Xiao P., Sun M., Corke H., Bao J.	Genetic diversity and population structure of a diverse set of rice germplasm for association mapping	Theor. Appl. Genet.	121	475-87	2010		
32580		Ngangkham U., Parida S.K., De S., Anand Raj Kumar K., Singh A.K., Singh N.K., Mohapatra T.	Genic markers for wild abortive (WA) cytoplasm based male sterility and its fertility restoration in rice	Molecular Breeding	26(2)	275-292	2010	_,_,_,_,RPS3,_,NAD1,_,_,_,_,RF1B,_,_,_,_,NAD4,_,18S  rRNA,RF1,_,_	PPR1,PPR13,cox3, coxIII, cox3a, cox3b, cox3c,coxI, COX1, cox1-1, cox1,rps3,PPR454, PPR10, PPR2,nad1, nadI, nadIB,PPR8,PPR9,atp9, RMtATP9, aatp9,PPR458, PPR7, PPR4,RF1b, Rf-1B, PPR7,PPR794, PPR6, PPR6-794, PPR5,PPR10,PPR12,cob, cob-1, cob-like,nad4, nadIV,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,rrn18,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,Rf4, Rf-4, PPR782a, PPR9, PPR3,PPR11
32581	20383562	Umate P., Tuteja R., Tuteja N.	Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human	Plant Mol. Biol.	73(4-5)	449-465	2010		
32582		Iwata H., Ebana K., Uga Y., Hayashi T., Jannink J.-L.	Genome-wide association study of grain shape variation among Oryza sativa L. germplasms based on elliptic Fourier analysis	Molecular Breeding	25(2)	203-215	2010		
32583	20194922	Yu L., Jiang J., Zhang C., Jiang L., Ye N., Lu Y., Yang G., Liu E., Peng C., He Z., Peng X.	Glyoxylate rather than ascorbate is an efficient precursor for oxalate biosynthesis in rice	Journal of Experimental Botany	61	1625-1634	2010		
32584	20155303	Hu J., Zhu L., Zeng D., Gao Z., Guo L., Fang Y., Zhang G., Dong G., Yan M., Liu J., Qian Q.	Identification and characterization of NARROW ANDROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice	Plant Mol. Biol.	73(3)	283-92	2010	ND1	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1
32585		Miyashita Y., Takasugi T., Ito Y.	Identification and expression analysis of PIN genes in rice	Plant Science	178	424-428	2010	PIN5A,PIN10B,PIN10A,LRA1,PIN9,PIN1D,PIN5C,PIN1A,PIN8,PIN1B,PIN1C,PIN5B	OsPIN5a,PIN3B, OsPIN3b, OsPIN10b,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsPIN2, PIN2, OsLRA1,OsPIN9,OsPIN1D, OsPIN1d,PIN5B, OsPIN5b, OsPIN5c,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN8,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN5C, OsPIN5c, OsPIN5b
32586		Qiu B., Zhou W., Xue D., Zeng F., Ali S., Zhang G.	Identification of Cr-tolerant lines in a rice (Oryza sativa) DH population	Euphytica	174	199-207	2010		
32587		Parihar A., Pathak A.R., Parihar P.	Identification of RAPD marker for the White Backed Plant Hopper (WBPH) resistant gene in rice	African Journal of Biotechnology	9	1423-1426	2010		
32588		Wang Y., Zhang G., Du J., Liu B., Wang M.	Influence of transgenic hybrid rice expressing a fused gene derived from cry1Ab and cry1Ac on primary insect pests and rice yield	Crop Protection	29	128-133	2010		
32589	20217123	Crofts A.J., Crofts N., Whitelegge J.P., Okita T.W.	Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seeds	Planta.	231	1261-1276	2010	_	RBPA, RBP-A
32590	20424856	Sato K., Suzuki R., Nishikubo N., Takenouchi S., Ito S., Nakano Y., Nakaba S., Sano Y., Funada R., Kajita S., Kitano H., Katayama Y.	Isolation of a novel cell wall architecture mutant of rice with defective Arabidopsis COBL4 ortholog BC1 required for regulated deposition of secondary cell wall components	Planta.	232	257-270	2010		
32591		Saito K., Hayano-Saito Y., Kuroki M., Sato Y.	Map-based cloning of the rice cold tolerance gene Ctb1	Plant Science	179	97-102	2010		
32592		Chen L., Zhao Z., Liu X., Liu L., Jiang L., Liu S., Zhang W., Wang Y., Liu Y., Wan J.	Marker-assisted breeding of a photoperiod-sensitive male sterile japonica rice with high cross-compatibility with indica rice	Molecular Breeding		1-12	2010		
32593		Basavaraj S.H., Singh V.K., Singh A., Singh A., Singh A., Anand D., Yadav S., Ellur R.K., Singh D., Gopala Krishnan S., Nagarajan M., Mohapatra T., Prabhu K.V., Singh A.K.	Marker-assisted improvement of bacterial blight resistance in parental lines of Pusa RH10, a superfine grain aromatic rice hybrid	Molecular Breeding	26(2)	293-305	2010		
32594	20164144	Frei M., Tanaka J.P., Chen C.P., Wissuwa M.	Mechanisms of ozone tolerance in rice: Characterization of two QTLs affecting leaf bronzing by gene expression profiling and biochemical analyses	Journal of Experimental Botany	61	1405-1417	2010		
32595	20091293	Jordan D.R., Mace E.S., Henzell R.G., Klein P.E., Klein R.R.	Molecular mapping and candidate gene identification of the Rf2 gene for pollen fertility restoration in sorghum [Sorghum bicolor (L.) Moench]	Theor. Appl. Genet.	120	1279-87	2010		
32596		Koppel R., Zimmerli F., Breitenmoser A.	Multiplex real-time PCR for the simultaneous detection and quantification of DNA from three transgenic rice species and construction and application of an artificial oligonucleotide as reference molecule	European Food Research and Technology	230	731-736	2010		
32597		Ye H., Foley M.E., Gu X.-Y.	New seed dormancy loci detected from weedy rice-derived advanced populations with major QTL alleles removed from the background	Plant Science	179	612-619	2010		
32598		Tacconi G., Baldassarre V., Lanzanova C., Faivre-Rampant O., Cavigiolo S., Urso S., Lupotto E., Vale G.	Polymorphism analysis of genomic regions associated with broad-spectrum effective blast resistance genes for marker development in rice	Molecular Breeding	26(4)	595-617	2010	PI9,PI1,PIZ	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
32599		Shivrain V.K., Burgos N.R., Sales M.A., Kuk Y.I.	Polymorphisms in the ALS gene of weedy rice (Oryza sativa L.) accessions with differential tolerance to imazethapyr	Crop Protection	29	336-341	2010		
32600		Kim S.-G., Lee S., Ryu J., Park C.-M.	Probing protein structural requirements for activation of membrane-bound NAC transcription factors in Arabidopsis and rice	Plant Science	178	239-244	2010		
32601		Roy R., Chakraborty S., Sharma G.D.	Proline, catalase and root traits as indices of drought resistance in bold grained rice (Oryza sativa) genotypes	African Journal of Biotechnology	8	6521-6528	2009		
32602		Wen F.-p., Zhang Z.-h., Bai T., Xu Q., Pan Y.-h.	Proteomics reveals the effects of gibberellic acid (GA<sub>3</sub>) on salt-stressed rice (Oryza sativa L.) shoots	Plant Science	178	170-175	2010		
32603	20473653	Ye G., Liang S., Wan J.	QTL mapping of protein content in rice using single chromosome segment substitution lines	Theor. Appl. Genet.	121	741-50	2010		
32604		Angaji S.A., Septiningsih E.M., Mackill D.J., Ismail A.M.	QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)	Euphytica	172	159-168	2010		
32605		Laza M.R.C., Kondo M., Ideta O., Barlaan E., Imbe T.	Quantitative trait loci for stomatal density and size in lowland rice	Euphytica	172	149-158	2010		
32606	20369251	Hirano K., Kotake T., Kamihara K., Tsuna K., Aohara T., Kaneko Y., Takatsuji H., Tsumuraya Y., Kawasaki S.	Rice BRITTLE CULM 3 (BC3) encodes a classical dynamin OsDRP2B essential for proper secondary cell wall synthesis	Planta.	232	95-108	2010	BC3	bc3, bc-3, OsDRP2B, DRP2B
32607	20512651	Uchiumi T., Okamoto T.	Rice fruit development is associated with an increased IAA content in pollinated ovaries	Planta.	232	579-92	2010		
32608		Liu G., Mei H., Liu H., Yu X., Zou G., Luo L.	Sensitivities of rice grain yield and other panicle characters to late-stage drought stress revealed by phenotypic correlation and QTL analysis	Molecular Breeding	25(4)	603-613	2010		
32610		Singh A., Singh P.K., Singh R., Pandit A., Mahato A.K., Gupta D.K., Tyagi K., Singh A.K., Singh N.K., Sharma T.R.	SNP haplotypes of the BADH1 gene and their association with aroma in rice (Oryza sativa L.)	Molecular Breeding	26(2)	325-338	2010		
32611		Liu J., Liang D., Song Y., Xiong L.	Systematic identification and expression analysis of BREVIS RADIX-like homologous genes in rice	Plant Science	178	183-191	2010	BRXL1,BRXL2,BRXL3,BRXL4,BRXL5,BRXL5.P	OsBRXL1,OsBRXL2,OsBRXL3,OsBRXL4,OsBRXL5,OsBRXL5.P, OsBRXL5
32612	20396901	Liu S., Jia J., Gao Y., Zhang B., Han Y.	The AtTudor2, a protein with SN-Tudor domains, is involved in control of seed germination in Arabidopsis	Planta.	232	197-207	2010		
32613		Asante M.D., Kovach M.J., Huang L., Harrington S., Dartey P.K., Akromah R., Semon M., McCouch S.	The genetic origin of fragrance in NERICA1	Molecular Breeding	26(3)	419-424	2010		
32614		Gangadhara, Kumar P.R., Prakash V.	The structure functional catalytic activity of rice bran lipase in the presence of selenium and lithium	European Food Research and Technology	230	551-557	2010		
32615		Singh A., Singh U., Mittal D., Grover A.	Transcript expression and regulatory characteristics of a rice glycosyltransferase OsGT61-1 gene	Plant Science	179	114-122	2010		
32616		Chen S.-Y., Lin Y.-T., Lin C.-W., Chen W.-Y., Yang C.H., Ku H.-M.	Transferability of rice SSR markers to bamboo	Euphytica	175	23-33	2010		
32617		Li X., Cao K., Wang C., Sun Z.-W., Yan L.	Variation of photosynthetic tolerance of rice cultivars (Oryza sativa L.) to chilling temperature in the light	African Journal of Biotechnology	9	1325-1337	2010		
32618		Ikuo Ando, Hiroyuki Sato, Noriaki Aoki, Yasuhiro Suzuki, Hideyuki Hirabayashi, Makoto Kuroki, Hiroyuki Shimizu, Tsuyu Ando and Yoshinobu Takeuchi	Genetic analysis of the low-amylose characteristics of rice cultivars Oborozuki and Hokkai-PL9	Breeding Science	60	187-194	2010	qAC9.3,WX1	,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
32619		Xiao, W.a , Yang, Q.b , Wang, H.a , Guo, T.a , Liu, Y.a , Zhu, X.b , Chen, Z.	Identification and fine mapping of a resistance gene to Magnaporthe oryzae in a space-induced rice mutant	Molecular Breeding	Article in press	1-10	2010	PI46	Pi46(t)
32620	18944325	Chuntai Wang, Mingpu Tan, Xin Xu, Guosong Wen, Duanpin Zhang, and Xinghua Lin	Localizing the Bacterial Blight Resistance Gene, Xa22(t), to a 100-Kilobase Bacterial Artificial Chromosome	Phytopathology	93(10)	258-1262	2003	XA22	Xa22, Xa22*, RXa20, Xa(t), Xa22(t)
32621		Xin Xu, N. Hayashi, C. T. Wang, H. Kato, T. Fujimura and S. Kawasaki	Efficient authentic fine mapping of the rice blast resistance gene Pik-h in the Pik cluster, using new Pik-h -differentiating isolates	Molecular Breeding	22(2)	289-299	2008	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
32622	21048083	Mizuta Y, Harushima Y, Kurata N.	Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.	Proc. Natl. Acad. Sci. U.S.A.	107(47)	20417-22	2010	DPL1,DPL2	,
32623		F. Lin , Y. Liu , L. Wang , X. Liu ,  and Q. Pan	A high-resolution map of the rice blast resistance gene Pi15 constructed by sequence-ready markers	Plant Breeding	126	287-290	2007	PI15	Pi15(t), Pi15, RMg34.
32624		PAN Qing-Hua, HU Zhen-Di, Tanisaka TAKATOSHI, WANG Ling	Fine Mapping of the Blast Resistance Gene Pi15, Linked to Pii, on Rice Chromosome 9	Acta Bot. Sin.	45(7)	871-877	2003	PII,PI3,PI15,PII2	Pi i, Pii, Pi-i, Pii(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi15(t), Pi15, RMg34.,Pi i2, Pii2, Pii2(t)
32625		Robert Fjellstrom, Concetta A. Conaway-Bormans, Anna M. McClung, Marco A. Marchetti, A. obert Shank and William D. Park	Development of DNA Markers Suitable for Marker Assisted Selection of Three Pi Genes Conferring esistance to Multiple Pyricularia grisea Pathotypes	Crop Sci.	44	1790-1798	2004	PITQ5,PITA,PIK,PIKH,PIB,PIKS	Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi-ks, Pi-s, Pik-s, Piks
32626	20872166	Iwamoto M, Takano M.	Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.	Biotechnol. Lett.	33(1)	173-178	2010	ACS3,EIN2,ACS2,ACS4,ERF59,ACO1,ACS5,ACS1,SSG6	ACC3*, ACC3, OsACS3, OS-ACS3,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsACS2, Os-ACS2,OsACS4, OS-ACS4,OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6,OsACO1, ACO,OsACS5, OS-ACS5, OsBphi008a,ACC1*, OsACS1, Os-ACS1, ACC1,OsACS6, ACS6
32627	20419467	Lee S,Jeong HJ,Kim SA,Lee J,Guerinot ML,An G	OsZIP5 is a plasma membrane zinc transporter in rice.	Plant Mol. Biol.	73(4-5)	507-17	2010		
32628	20478970	Liang J,Zhao L,Challis R,Leyser O	Strigolactone regulation of shoot branching in chrysanthemum (Dendranthema grandiflorum).	J. Exp. Bot.	61(11)	3069-78	2010		
32629	20498060	Xie W,Feng Q,Yu H,Huang X,Zhao Q,Xing Y,Yu S,Han B,Zhang Q	Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing.	Proc. Natl. Acad. Sci. U.S.A.	107(23)	10578-83	2010		
32630	20530196	Park M,Yim HK,Park HG,Lim J,Kim SH,Hwang YS	Interference with oxidative phosphorylation enhances anoxic expression of rice alpha-amylase genes through abolishing sugar regulation.	J. Exp. Bot.	61(12)	3235-44	2010		
32631	20542917	Zhang M,Wu YH,Lee MK,Liu YH,Rong Y,Santos TS,Wu C,Xie F,Nelson RL,Zhang HB	Numbers of genes in the NBS and RLK families vary by more than four-fold within a plant species and are regulated by multiple factors.	Nucleic Acids Res.	38(19)	6513-25	2010		
32632	20543848	Itoh H,Nonoue Y,Yano M,Izawa T	A pair of floral regulators sets critical day length for Hd3a florigen expression in rice.	Nat Genet	42(7)	635-8	2010	GI,HD3A,GHD7	OsGI, Gi, Os-GI,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
32633	20559817	Wiebe K,Harris NS,Faris JD,Clarke JM,Knox RE,Taylor GJ,Pozniak CJ	Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum).	Theor. Appl. Genet.	121(6)	1047-58	2010		
32634	20563548	Liu WX,Liu HL,Chai ZJ,Xu XP,Song YR,Qu LQ	Evaluation of seed storage-protein gene 5' untranslated regions in enhancing gene expression in transgenic rice seed.	Theor. Appl. Genet.	121(7)	1267-74	2010	ACT2	OsACT2, Act2
32635	20565843	Liu Q,Zhang C,Yang Y,Hu X	Genome-wide and molecular evolution analyses of the phospholipase D gene family in Poplar and Grape.	BMC Plant Biol	10	117	2010		
32636	20570296	Wakuta S,Hamada S,Ito H,Matsuura H,Nabeta K,Matsui H	Identification of a beta-glucosidase hydrolyzing tuberonic acid glucoside in rice (Oryza sativa L.).	Phytochemistry	71(11-12)	1280-8	2010	BGLU13	OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13
32637	20576316	Hossain MA,Cho JI,Han M,Ahn CH,Jeon JS,An G,Park PB	The ABRE-binding bZIP transcription factor OsABF2 is a positive regulator of abiotic stress and ABA signaling in rice.	J. Plant Physiol.	167(17)	1512-20	2010	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46
32638	20580124	Sperotto RA,Boff T,Duarte GL,Santos LS,Grusak MA,Fett JP	Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.	J. Plant Physiol.	167(17)	1500-6	2010		
32639	20589366	Hayashi K,Yasuda N,Fujita Y,Koizumi S,Yoshida H	Identification of the blast resistance gene Pit in rice cultivars using functional markers.	Theor. Appl. Genet.	121(7)	1357-67	2010	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
32640	20591144	Sharma S,Sreenivasulu N,Harshavardhan VT,Seiler C,Sharma S,Khalil ZN,Akhunov E,Sehgal SK,Roder MS	Delineating the structural, functional and evolutionary relationships of sucrose  phosphate synthase gene family II in wheat and related grasses.	BMC Plant Biol	10	134	2010		
32641	20602115	Pandit A,Rai V,Bal S,Sinha S,Kumar V,Chauhan M,Gautam RK,Singh R,Sharma PC,Singh AK,Gaikwad K,Sharma TR,Mohapatra T,Singh NK	Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryza sativa L.).	Mol. Genet. Genomics	284(2)	121-36	2010		
32642	20607290	Fujino K,Wu J,Sekiguchi H,Ito T,Izawa T,Matsumoto T	Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L.	Mol. Genet. Genomics	284(2)	137-46	2010	SE1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
32643	20610409	Momose M,Abe Y,Ozeki Y	Miniature Inverted-repeat Transposable Elements of Stowaway are Active in Potato.	Genetics	186(1)	59-66	2010		
32644	20610705	Zhang D,Liang W,Yin C,Zong J,Gu F,Zhang D	OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.	Plant Physiol.	154(1)	149-62	2010	_,LTP2,_,OSC4,TDR,OSC6	YY1, OsLTPc2, OsLtpIII.2, LTP45,nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6
32645	20626650	Hurwitz BL,Kudrna D,Yu Y,Sebastian A,Zuccolo A,Jackson SA,Ware D,Wing RA,Stein L	Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza.	Plant J.	63(6)	990-1003	2010		
32646	20627947	Satoh-Cruz M,Crofts AJ,Takemoto-Kuno Y,Sugino A,Washida H,Crofts N,Okita TW,Ogawa M,Satoh H,Kumamaru T	Protein Disulfide Isomerase Like 1-1 Participates in the Maturation of Proglutelin Within the Endoplasmic Reticulum in Rice Endosperm.	Plant Cell Physiol.	51(9)	1581-1593	2010	_	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1
32647	20630103	Hu R,Qi G,Kong Y,Kong D,Gao Q,Zhou G	Comprehensive analysis of NAC domain transcription factor gene family in Populus  trichocarpa.	BMC Plant Biol	10	145	2010		
32648	20632034	Takasaki H,Maruyama K,Kidokoro S,Ito Y,Fujita Y,Shinozaki K,Yamaguchi-Shinozaki K,Nakashima K	The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.	Mol. Genet. Genomics	284(3)	173-83	2010	_,NAC5,LEA3-1,NAC6	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
32649	20639576	Chen Q,Westfall CS,Hicks LM,Wang S,Jez JM	Kinetic basis for the conjugation of auxin by a GH3 family indole acetic acid-amido synthetase.	J. Biol. Chem.	285(39)	29780-6	2010		
32650	20643810	Guan JC,Yeh CH,Lin YP,Ke YT,Chen MT,You JW,Liu YH,Lu CA,Wu SJ,Lin CY	A 9 bp cis-element in the promoters of class I small heat shock protein genes on  chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.	J. Exp. Bot.	61(15)	4249-61	2010		
32651	20647377	Du Y,Chu H,Chu IK,Lo C	CYP93G2 is a flavanone 2-hydroxylase required for C-glycosylflavone biosynthesis  in rice.	Plant Physiol.	154(1)	324-33	2010	_,CYP93G2	OsCGT, CGT,CYP93G2, OsF2H
32652	20650543	Sasayama D,Azuma T,Itoh K	Involvement of cell wall-bound phenolic acids in decrease in cell wall susceptibility to expansins during the cessation of rapid growth in internodes of floating rice.	J. Plant Physiol.	168(2)	121-7	2010		
32653	20652530	Singh N,Dang TT,Vergara GV,Pandey DM,Sanchez D,Neeraja CN,Septiningsih EM,Mendioro M,Tecson-Mendoza EM,Ismail AM,Mackill DJ,Heuer S	Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A.	Theor. Appl. Genet.	121(8)	1441-53	2010		
32654	20663087	Xiong G,Li R,Qian Q,Song X,Liu X,Yu Y,Zeng D,Wan J,Li J,Zhou Y	The rice dynamin-related protein DRP2B mediates membrane trafficking and thereby  plays a critical role in secondary cell wall cellulose biosynthesis.	Plant J.	64(1)	56-70	2010	BC3	bc3, bc-3, OsDRP2B, DRP2B
32655	20663089	Shen X,Yuan B,Liu H,Li X,Xu C,Wang S	Opposite functions of a rice mitogen-activated protein kinase in the process of resistance against Xanthomonas oryzae.	Plant J.	64(1)	86-99	2010	CHT1,PAL1,PR1A,_,NH1,MPK6,AOS2,PR1B,PR10A	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsMPK6, OsDR6, OsMPK4,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
32656	20663584	Zhang A,Lu Q,Yin Y,Ding S,Wen X,Lu C	Comparative proteomic analysis provides new insights into the regulation of carbon metabolism during leaf senescence of rice grown under field conditions.	J. Plant Physiol.	167(16)	1380-9	2010		
32657	20680611	Qiu Y,Guo J,Jing S,Zhu L,He G	High-resolution mapping of the brown planthopper resistance gene Bph6 in rice and characterizing its resistance in the 9311 and Nipponbare near isogenic backgrounds.	Theor. Appl. Genet.	121(8)	1601-11	2010	BPH6	Bph6
32658	20685968	Yun MS,Kawagoe Y	Septum Formation in Amyloplasts Produces Compound Granules in the Rice Endosperm  and is Regulated by Plastid Division Proteins.	Plant Cell Physiol.	51(9)	1469-1479	2010		
32659	20693412	Shen C,Wang S,Bai Y,Wu Y,Zhang S,Chen M,Guilfoyle TJ,Wu P,Qi Y	Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).	J. Exp. Bot.	61(14)	3971-81	2010	ARF17,ARF16,ARF6A,ARF6B,ARF1,ARF22,ARF8,ARF7B,ARF16,_,ARF7A,ARF2,ARF10,ARF7	OsARF17,OsARF16,OsARF6a, OsARF6, ARF6,OsARF6b, OsARF25, ARF25,OsARF1, arf1, OsARF23, ARF23,OsARF22,OsARF8, OsARF12, ARF12,OsARF7b, OsARF21,OsARF16, OsARF2, OsARF1,OsMP, OsARF5, OsARF11,OsARF7a, OsARF19, ARF19, OsARF7,OsARF2, OsARF4, ARF4,OsARF10,OsARF7
32660	20695529	Allison JR,Moll GP,van Gunsteren WF	Investigation of stability and disulfide bond shuffling of lipid transfer proteins by molecular dynamics simulation.	Biochemistry	49(32)	6916-27	2010		
32661	20699001	Zheng L,Ying Y,Wang L,Wang F,Whelan J,Shou H	Identification of a novel iron regulated basic helix-loop-helix protein involved  in Fe homeostasis in Oryza sativa.	BMC Plant Biol	10	166	2010	_	OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63
32662	20700573	Saito H,Okumoto Y,Yoshitake Y,Inoue H,Yuan Q,Teraishi M,Tsukiyama T,Nishida H,Tanisaka T	Complete loss of photoperiodic response in the rice mutant line X61 is caused by  deficiency of phytochrome chromophore biosynthesis gene.	Theor. Appl. Genet.	122(1)	109-18	2010	SE1,SE13,E1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Se13, OsHY2, OsGUN3, GUN3, PS13,E1 (=m Ef1+), mEf1+, Hd4(t), m Ef1-a, m Ef1-b
32663	20707904	Takahashi A,Hayashi N,Miyao A,Hirochika H	Unique features of the rice blast resistance Pish locus revealed by large scale retrotransposon-tagging.	BMC Plant Biol	10	175	2010	PIT,PI37,PISH,PI35	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi37(t), Pi37,Pi sh, Pish, Pi-sh, Pish(t),Pi35(t)
32665	20714705	Tan Y,Li S,Xie H,Duan S,Wang T,Zhu Y	Genetical and molecular analysis reveals a cooperating relationship between cytoplasmic male sterility- and fertility restoration-related genes in Oryza species.	Theor. Appl. Genet.	122(1)	9-19	2010		
32666	20716699	Hirano K,Asano K,Tsuji H,Kawamura M,Mori H,Kitano H,Ueguchi-Tanaka M,Matsuoka M	Characterization of the Molecular Mechanism Underlying Gibberellin Perception Complex Formation in Rice.	Plant Cell	22(8)	2680-96	2010		
32667	20720170	Taylor NL,Howell KA,Heazlewood JL,Tan TY,Narsai R,Huang S,Whelan J,Millar AH	Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation  of a basic amino acid carrier involved in arginine metabolism during seed germination.	Plant Physiol.	154(2)	691-704	2010		
32668	20727618	Kato-Noguchi H,Yasuda Y,Sasaki R	Soluble sugar availability of aerobically germinated barley, oat and rice coleoptiles in anoxia.	J. Plant Physiol.	167(18)	1571-6	2010		
32669	20728960	Roychoudhury A,Basu S,Sengupta DN	Amelioration of salinity stress by exogenously applied spermidine or spermine in  three varieties of indica rice differing in their level of salt tolerance.	J. Plant Physiol.	168(4)	317-28	2011		
32670	20729483	Zhou L,Liu Y,Liu Z,Kong D,Duan M,Luo L	Genome-wide identification and analysis of drought-responsive microRNAs in Oryza  sativa.	J. Exp. Bot.	61(15)	4157-68	2010		
32671	20730544	Wally O,Punja ZK	Enhanced disease resistance in transgenic carrot (Daucus carota L.) plants over-expressing a rice cationic peroxidase.	Planta.	232(5)	1229-39	2010		
32672	20732878	Bedon F,Bomal C,Caron S,Levasseur C,Boyle B,Mansfield SD,Schmidt A,Gershenzon J,Grima-Pettenati J,Seguin A,Mackay J	Subgroup 4 R2R3-MYBs in conifer trees: gene family expansion and contribution to  the isoprenoid- and flavonoid-oriented responses.	J. Exp. Bot.	61(14)	3847-64	2010		
32673	20734061	Kim SI,Tai TH	Genetic analysis of two OsLpa1-like genes in Arabidopsis reveals that only one is required for wild-type seed phytic acid levels.	Planta.	232(5)	1241-50	2010		
32674	20737168	Arango J,Wust F,Beyer P,Welsch R	Characterization of phytoene synthases from cassava and their involvement in abiotic stress-mediated responses.	Planta.	232(5)	1251-62	2010		
32675	20737264	Yan CJ,Tian ZX,Fang YW,Yang YC,Li J,Zeng SY,Gu SL,Xu CW,Tang SZ,Gu MH	Genetic analysis of starch paste viscosity parameters in glutinous rice (Oryza sativa L.).	Theor. Appl. Genet.	122(1)	63-76	2011	SBE3,ALK,AGPL2,FLO5,SSIIIB,WX1,SSIVA,SSIVB,AGPL3,SSIIC,SSI,SBE1,SBE4,ISA1,SSIIB,ISA3,GBSSII,ISA2,AGPS1,PUL	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSIIIb. SSIII-1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1,OsSSIIc, SSII-1, SSII1 ,OsSSI, SSS 1, SSS1, SS1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsISA3,GBSS2,OsISA2,OsAGPS1, APS1, OsAPS1, AGPsma,OsPUL, SDBE, OsPUL3, RE
32676	20796287	Wang N,Wang H,Wang H,Zhang D,Wu Y,Ou X,Liu S,Dong Z,Liu B	Transpositional reactivation of the Dart transposon family in rice lines derived  from introgressive hybridization with Zizania latifolia.	BMC Plant Biol	10	190	2010		
32677	20805329	Abe M,Yoshikawa T,Nosaka M,Sakakibara H,Sato Y,Nagato Y,Itoh JI	WAVY LEAF 1, an Ortholog of Arabidopsis HEN1, Regulates Shoot Development by Maintaining microRNA and trans-acting siRNA Accumulation in Rice.	Plant Physiol.	154(3)	1335-46	2010	SHO2,SHO1,WAF1	sho2,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,waf1, waf1-1, waf1-2, HEN1
32678	20807214	Hayashi N,Inoue H,Kato T,Funao T,Shirota M,Shimizu T,Kanamori H,Yamane H,Hayano-Saito Y,Matsumoto T,Yano M,Takatsuji H	Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein  and was generated by acquiring a promoter through local genome duplication.	Plant J.	64(3)	498-510	2010	PB1	Pb1, Pbst, RMG58.
32679	20822502	Yokoyama R,Uwagaki Y,Sasaki H,Harada T,Hiwatashi Y,Hasebe M,Nishitani K	Biological implications of the occurrence of 32 members of XTH (xyloglucan endotransglucosylase/hydrolase) family of proteins in the bryophyte Physcomitrella patens.	Plant J.	64(4)	645-56	2010		
32680	20822505	Zhang J,Nallamilli BR,Mujahid H,Peng Z	OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).	Plant J.	64(4)	604-17	2010	AGPL2,AGPS1,AGPL1,GH3-8,MFO1,AGPS2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsMADS6, MADS6, OsMFO1,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
32681	20823253	Ueno D,Yamaji N,Kono I,Huang CF,Ando T,Yano M,Ma JF	Gene limiting cadmium accumulation in rice.	Proc. Natl. Acad. Sci. U.S.A.	107(38)	16500-5	2010	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3
32682	20830488	Takagi K,Maekawa M,Tsugane K,Iida S	Transposition and target preferences of an active nonautonomous DNA transposon nDart1 and its relatives belonging to the hAT superfamily in rice.	Mol. Genet. Genomics	284(5)	343-55	2010	NDART1-0,ADART,NDART1	nDART1-0,aDart,nDart, nDART1, nDART
32683	20830595	Li W,Wu J,Weng S,Zhang Y,Zhang D,Shi C	Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.	Planta.	232(6)	1383-96	2010		
32684	20838758	Su Z,Hao C,Wang L,Dong Y,Zhang X	Identification and development of a functional marker of TaGW2 associated with grain weight in bread wheat (Triticum aestivum L.).	Theor. Appl. Genet.	122(1)	211-23	2010		
32685	20603282	Hirose T., Zhang Z., Miyao A., Hirochika H., Ohsugi R., Terao T.	Disruption of a gene for rice sucrose transporter, OsSUT1, impairs pollen function but pollen maturation is unaffected.	Journal of Experimental Botany	61(13)	3639-3646	2010	SUT1,SUT3	OsSUT1, OsSUT2,OsSUT3(t), OsSUT3, SUC3, OsSUT2
32686	20498338	Zhao X.Q., Mitani N., Yamaji N., Shen R.F., Ma J.F.	Involvement of silicon influx transporter OsNIP2;1 in selenite uptake in rice.	Plant Physiol.	153(4)	1871-1877	2010	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
32687	20566706	Wei X., Xu J., Guo H., Jiang L., Chen S., Yu C., Zhou Z., Hu P., Zhai H., Wan J.	DTH8 suppresses flowering in rice, influencing plant height and yield potential simultaneously.	Plant Physiol.	153(4)	1747-1758	2010	HD3A,HD5,EF1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
32688	20487382	Ammiraju J.S.S., Fan C., Yu Y., Song X., Cranston K.A., Pontaroli A.C., Lu F., Sanyal A., Jiang N., Rambo T., Currie J., Collura K., Talag J., Bennetzen J.L., Chen M., Jackson S., Wing R.A.	Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.	Plant Journal	63(3)	430-442	2010	ADH1	Adh1, Adh1/2, adh1/adh2, OsADH1
32689	20498340	Huang C.-F., Yamaji N., Ma J.F.	Knockout of a bacterial-type ATP-binding cassette transporter gene, AtSTAR1, results in increased aluminum sensitivity in Arabidopsis.	Plant Physiol.	153(4)	1669-1677	2010		
32690	20581256	Schnurbusch T., Hayes J., Hrmova M., Baumann U., Ramesh S.A., Tyerman S.D., Langridge P., Sutton T.	Boron toxicity tolerance in barley through reduced expression of the multifunctional aquaporin HvNIP2;1.	Plant Physiol.	153(4)	1706-1715	2010		
32692	20525005	Kishi-Kaboshi M., Okada K., Kurimoto L., Murakami S., Umezawa T., Shibuya N., Yamane H., Miyao A., Takatsuji H., Takahashi A., Hirochika H.	A rice fungal MAMP-responsive MAPK cascade regulates metabolic flow to antimicrobial metabolite synthesis.	Plant Journal	63(4)	599-612	2010	MKK5,MPK6,MAPK6,BZIP37,SMG1,MSRMK2	OsMKK5, BUD1, OsBUD1,OsMPK6, OsDR6, OsMPK4,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsTGAP1, TGAP1, OsbZIP37,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
32693	20487381	Yan H., Kikuchi S., Neumann P., Zhang W., Wu Y., Chen F., Jiang J.	Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice.	Plant Journal	63(3)	353-365	2010		
32694	20460361	Sun S.-J., Guo S.-Q., Yang X., Bao Y.-M., Tang H.-J., Sun H., Huang J., Zhang H.-S.	Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.	Journal of Experimental Botany	61(10)	2807-2818	2010	_,ZFP179,DREB2A,P5CS,LEA3-1	OsProT, ProT, OsProT2, ProT2,OsZFP179,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
32695	20607362	Huang C.-K., Yu S.-M., Lu C.-A.	A rice DEAD-box protein, OsRH36, can complement an Arabidopsis atrh36 mutant, but cannot functionally replace its yeast homolog Dbp8p.	Plant Mol. Biol.	74(1)	119-128	2010	_	OsRH36
32696	20443024	Wu C., Fu Y., Hu G., Si H., Cheng S., Liu W.	Isolation and characterization of a rice mutant with narrow and rolled leaves.	Planta.	232(2)	313-324	2010		
32697	20439547	Liu L., Zhou Y., Szczerba M.W., Li X., Lin Y.	Identification and application of a rice senescence-associated promoter.	Plant Physiol.	153(3)	1239-1249	2010		
32699	20443025	Abiko T., Wakayama M., Kawakami A., Obara M., Kisaka H., Miwa T., Aoki N., Ohsugi R.	Changes in nitrogen assimilation, metabolism, and growth in transgenic rice plants expressing a fungal NADP(H)-dependent glutamate dehydrogenase (gdhA).	Planta.	232(2)	299-311	2010		
32700		Li M.-M., Xu L., Ren J.-F., Cao G.-L., Yu L.-Q., He H.-H., Han L.-Z., Koh H.-J.	Identification of quantitative trait loci for grain traits in japonica rice.	Agricultural Sciences in China	9(7)	929-936	2010		
32701	20409004	Lee Y.-S., Jeong D.-H., Lee D.-Y., Yi J., Ryu C.-H., Kim S.L., Jeong H.J., Choi S.C., Jin P., Yang J., Cho L.-H., Choi H., An G.	OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB.	Plant Journal	63(1)	18-30	2010	_,PHYB	OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06,phyB, PHYB1, OsPHYB, OsphyB
32702	20574667	Zhang Z., Li F., Li D., Zhang H., Huang R.	Expression of ethylene response factor JERF1 in rice improves tolerance to drought.	Planta.	232(3)	765-774	2010		
32703	20567981	Yi N., Kim Y.S., Jeong M.-H., Oh S.-J., Jeong J.S., Park S.-H., Jung H., Choi Y.D., Kim J.-K.	Functional analysis of six drought-inducible promoters in transgenic rice plants throughout all stages of plant growth.	Planta.	232(3)	743-754	2010		
32704		Abbasi F.M., Shah A.H., Masood R., Mujadad R., Nawaz F., Sajid M., Afzal M., Majid A., Akhtar N., Bukhari I.	Production and molecular characterization of wide cross derivatives in rice.	African Journal of Biotechnology	9(25)	3732-3735	2010		
32705	20549230	Ilg A., Yu Q., Schaub P., Beyer P., Al-Babili S.	Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta.	Planta.	232(3)	691-699	2010		
32706		Kumar A., Kumar S., Kumar R., Kumar V., Prasad L., Kumar N., Singh D.	Identification of blast resistance expression in rice genotypes using molecular markers (RAPD & SCAR).	African Journal of Biotechnology	9(24)	3501-3509	2010		
32707		Naveed S.A., Babar M., Arif A., Zafar Y., Sabar M., Ali I., Chragh M., Arif M.	Detection of bacterial blight resistant gene xa5 using linked marker approaches.	African Journal of Biotechnology	9(24)	3549-3554	2010		
32708		Wu J.-R., Fan F.-J., Du J.-H., Fan Y.-Y., Zhuang J.-Y.	Dissection of QTLs for Hull Silicon Content on the Short Arm of Rice Chromosome 6.	Rice Science	17(2)	99-104	2010		
32709		Wang Z.-F., Wang J.-F., Bao Y.-M., Wu Y.-Y., Su X., Zhang H.-S.	Inheritance of Rice Seed Germination Ability under Salt Stress.	Rice Science	17(2)	105-110	2010		
32710		Huang X., Jin Z.-X., Li X.-G., Liu H.-L., Xu M.-L., Zhang F.-Z., Zhang Z.-C.	Effects of Grain Protein Content Selection on Protein Content and Key Enzyme Activity Involved in Nitrogen Metabolism in Progenies Derived from a Rice Cross.	Rice Science	17(2)	156-160	2010		
32711		Wang H.-Z., Zhang L.-H., Ma J., Li X.-Y., Li Y., Zhang R.-P., Wang R.-Q.	Effects of Water Stress on Reactive Oxygen Species Generation and Protection System in Rice During Grain-Filling Stage.	Agricultural Sciences in China	9(5)	633-641	2010		
32712		MA H.-l., ZHOU H.-l., ZHANG H.-y., ZHAO J.	Cloning and Expression Analysis of an AP2/ERF Gene and Its Responses to Phytohormones and Abiotic Stresses in Rice.	Rice Science	17(1)	1-9	2010		
32713		XIA Z.-h., HAN F., GAO L.-f., YUAN Q.-h., ZHAI W.-x., LIU D., LUO Y.-h.	Application of Functional Markers to Identify Genes for Bacterial Blight Resistance in Oryza rufipogon.	Rice Science	17(1)	73-76	2010		
32714		CHEN D.-x., CHEN X.-w., MA B.-t., WANG Y.-p., ZHU L.-h., LI S.-g.	Genetic Transformation of Rice with Pi-d2 Gene Enhances Resistance to Rice Blast Fungus Magnaporthe oryzae.	Rice Science	17(1)	19-27	2010	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t)
32715		SONG Y., AI C.-r., JING S.-j., YU D.-q.	Research Progress on Functional Analysis of Rice WRKY Genes.	Rice Science	17(1)	60-72	2010		
32716		MA B.-j., GU Z.-m., TANG H.-j., CHEN X.-f., LIU F., ZHANG H.-s.	Preliminary Study on Function of Calcineurin B-Like Protein Gene OsCBL8 in Rice.	Rice Science	17(1)	10-18	2010		
32717		GUO Y., CHENG B.-s., HONG D.-l.	Construction of SSR Linkage Map and Analysis of QTLs for Rolled Leaf in Japonica Rice.	Rice Science	17(1)	28-34	2010		
32718		Himabindu K., Suneetha K., Sama V.S.A.K., Bentur J.S.	A new rice gall midge resistance gene in the breeding line CR57-MR1523, mapping with flanking markers and development of NILs.	Euphytica	174(2)	179-187	2010		
32719	20363869	Park SH, Yi N, Kim YS, Jeong MH, Bang SW, Choi YD, Kim JK.	Analysis of five novel putative constitutive gene promoters in transgenic rice plants.	J. Exp. Bot.	61(9)	2459-67.	2010	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
32720	19061530	Cheema KK, NK Grewal, Y Vikal, A Das, R Sharma, JS Lore, D Bhatia, R Mahajan, V Gupta and Kuldeep Singh	A novel bacterial blight resistance gene from Oryza nivara mapped to 38 Kbp region on chromosome 4L and transferred to O. sativa L.	Genetics Research	90	397-407	2008	XA38	Xa38
32721	21410466	Masayuki Murai, Hironori Nagano, Kazumitsu Onishi, Atsushi Ogino, Naofumi Ichikawa, Hari Bahadur Kc and Yoshio Sano	Differentiation in wild-type allele of the sd1 locus concerning culm length between indica and japonica subspecies of Oryza sativa (rice)	Hereditas	148(1)	1-7	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
32722	21212298	Yusaku Uga; Kazutoshi Okuno; Masahiro Yano	Dro1, a major QTL involved in deep rooting of rice under upland field conditions	Journal of Experimental Botany			2011	DRO1	Dro1
32723		Yusaku Uga; Kazutoshi Okuno; Masahiro Yano	Fine mapping of Sta1, a quantitative trait locus determining stele transversal area, on rice chromosome 9	Molecular Breeding	26(3)	533-538	2010	STA1	Sta1
32724		Shukun Jiang, Xijuan Zhang, Jiayu Wang, Wenfu Chen, Zhengjin Xu	Fine mapping of the quantitative trait locus qFLL9 controlling flag leaf length in rice	Euphytica	176	341-347	2010	qFLL9	qFLL9
32726		Asanori Yara, Cong Nguyen Phi, Masaya Matsumura, Atsushi Yoshimura and Hideshi Yasui	Development of near-isogenic lines for BPH25(t) and BPH26(t), which confer resistance to the brown planthopper, Nilaparvata lugens (St?l.) in indica riceeADR52f	Breeding Science	60	639-647	2010	BPH25,BPH26	Bph25(t),Bph26(t)
32727	15659435	Itoh J, Nonomura K, Ikeda K, Yamaki S, Inukai Y, Yamagishi H, Kitano H, Nagato Y.	Rice plant development: from zygote to spikelet.	Plant Cell Physiol.	46(1)	23-47.	2005		
32728	20198467	Thiemele, D., Boisnard, A., Ndjiondjop, M.-N., Cheron, S., Sere, Y., Ake, S., Ghesquiere, A., Albar, L.	Identification of a second major resistance gene to Rice yellow mottle virus, RYMV2, in the African cultivated rice species, O. glaberrima	Theor. Appl. Genet.	121 (1)	169-179	2010	RYMV2	OsCPR5-1, CPR5-1
32729	20495564	Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M.	OsSPL14 promotes panicle branching and higher grain productivity in rice 	Nat Genet	42(6)	545-9	2010	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
32730		Yuka Kitomi, Atsushi Ogawa, Hidemi Kitano and Yoshiaki Inukai	CRL4 regulates crown root formation through auxin transport in rice	Plant Root		19-28	2008	CRL4,_	OsGNOM1, GNOM1, CRL4/GNOM1,
32731		Y. KITOMI, H. KITANO and Y. INUKAI	Mapping of the CROWN ROOTLESS3 gene, CRL3, in rice	RGN	24	31-33	2008	CRL3	crl3
32732		Y. Yamamoto, Y. Inukai, H. Kitano, T. Sazuka and M. Matsuoka	Characterization and mapping of the CROWN ROOTLESS2 gene, CRL2, in rice	RGN	25	25-26	2010	CRL2	crl2*, crl2
32733	18997409	Vu NT, Shimada H, Kakuta Y, Nakashima T, Ida H, Omori T, Nishi A, Satoh H, Kimura M.	Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) from Oryza sativa L.	Biosci. Biotechnol. Biochem.	72(11)	2858-2866	2008	SBE1	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
32734	20570652	Kato Y,Konishi M,Shigyo M,Yoneyama T,Yanagisawa S	Characterization of plant eukaryotic translation initiation factor 6 (eIF6) genes: The essential role in embryogenesis and their differential expression in Arabidopsis and rice.	Biochem. Biophys. Res. Commun.	397(4)	673-8	2010		
32735	20576097	Peng X,Wang K,Hu C,Zhu Y,Wang T,Yang J,Tong J,Li S,Zhu Y	The mitochondrial gene orfH79 plays a critical role in impairing both male gametophyte development and root growth in CMS-Honglian rice.	BMC Plant Biol	10	125	2010	_	orfH79, ORFH79
32736	20626916	Li Q,Li L,Yang X,Warburton ML,Bai G,Dai J,Li J,Yan J	Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight.	BMC Plant Biol	10	143	2010	GW2	OsGW2
32737	20631318	Cao FQ,Werner AK,Dahncke K,Romeis T,Liu LH,Witte CP	Identification and characterization of proteins involved in rice urea and arginine catabolism.	Plant Physiol.	154(1)	98-108	2010	_,_,_,_,NGLF	UreD, OsUreD,UreF, OsUreF,,UreG, OsUreG,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM
32738	20639575	Nakagawa M,Ueyama M,Tsuruta H,Uno T,Kanamaru K,Mikami B,Yamagata H	Functional analysis of the cucumisin propeptide as a potent inhibitor of its mature enzyme.	J. Biol. Chem.	285(39j	29797-807	2010		
32739	20652591	Byers E,Rueger J,Bonen L	Impact of genomic environment on mitochondrial rps7 mRNA features in grasses.	Mol. Genet. Genomics	284(3)	207-16	2010		
32740	20653414	Hebrard E,Poulicard N,Gerard C,Traore O,Albar L,Fargette D,Bessin Y,Vignols F	Direct interaction between the Rice yellow mottle virus VPg and the central domain of the rice eIF(iso)4G1 factor correlates with rice susceptibility and RYMV virulence.	Mol. Plant Microbe Interact.	23i11j	1506-13	2010		
32741	20719766	Yokota K,Soyano T,Kouchi H,Hayashi M	Function of GRAS Proteins in Root Nodule Symbiosis is Retained in Homologs of a Non-Legume, Rice.	Plant Cell Physiol.	51(9)	1436-1442	2010	NSP1,NSP2	Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13
32742	20739304	Matsui H,Yamazaki M,Kishi-Kaboshi M,Takahashi A,Hirochika H	AGC Kinase OsOxi1 Positively Regulates Basal Resistance through Suppression of OsPti1a-Mediated Negative Regulation.	Plant Cell Physiol.	51(10)	1731-1744	2010	_,RLCK33,RLCK178	OsOxi1,OsPti1b, OsRLCK33,OsPti1a, OsRLCK178
32743	20825165	Kuntothom T,Raab M,Tvaroska I,Fort S,Penthaisong S,Canada FJ,Calle L,Jimenez-Barbero J,Ketudat Cairns JR,Hrmova M	Binding of beta-D-glucosides and beta-D-mannosides by rice and barley beta-D-glycosidases with distinct substrate specificities.	Biochemistry	49(40)	8779-8793	2010		
32744	20478969	Chen J., Wang P., Mi H.-L., Chen G.-Y., Xu D.-Q.	Reversible association of ribulose-1, 5-bisphosphate carboxylase/oxygenase activase with the thylakoid membrane depends upon the ATP level and pH in rice without heat stress	J. Exp. Bot.	61(11)	2939-2950	2010		
32745	20566563	Frey N., Klotz J., Nick P.	A kinesin with calponin-homology domain is involved in premitotic nuclear migration	J. Exp. Bot.	61(12)	3423-3437	2010		
32746	20444225	Zhang M., Zhang B., Qian Q., Yu Y., Li R., Zhang J., Liu X., Zeng D., Li J., Zhou Y.	Brittle Culm 12, a dual-targeting kinesin-4 protein, controls cell-cycle progression and wall properties in rice	Plant J.	63(2)	312-328	2010	BC12	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12
32747	20593223	Park J.-J., Jin P., Yoon J., Yang J.-I., Jeong H.J., Ranathunge K., Schreiber L., Franke R., Lee I.-J., An G.	Mutation in Wilted Dwarf and Lethal 1 (WDL1) causes abnormal cuticle formation and rapid water loss in rice	Plant Mol. Biol.	74(1)	91-103	2010	GELP112	OsGELP112, WDL1
32748	20600702	Nuruzzaman M., Manimekalai R., Sharoni A.M., Satoh K., Kondoh H., Ooka H., Kikuchi S.	Genome-wide analysis of NAC transcription factor family in rice.	Gene	465(1-2)	30-44	2010		
32749		Ouyang J., Cai Z., Xia K., Wang Y., Duan J., Zhang M.	Identification and analysis of eight peptide transporter homologs in rice.	Plant Sci.	179(4)	374-382	2010	PTR7,PTR8,PTR3,PTR1,PTR6,PTR2,PTR5,PTR4	OsPTR7, OsNPF8.1, NPF8.1 ,OsPTR8, OsNPF8.5, NPF8.5 ,OsPTR3, OsNPF5.5, NPF5.5 ,OsPTR1, OsNPF8.2, NPF8.2 ,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsPTR2, OsNPF2.2, NPF2.2,OsPTR5, OsNPF7.4, NPF7.4 ,OsPTR4, OsNPF7.1, NPF7.1 
32750		Tang P., Zhang Y., Sun X., Tian D., Yang S., Ding J.	Disease resistance signature of the leucine-rich repeat receptor-like kinase genes in four plant species.	Plant Sci.	179(4)	399-406	2010		
32751		Opassiri R., Maneesan J., Akiyama T., Pomthong B., Jin S., Kimura A., Cairns J.R.K.	Rice Os4BGlu12 is a wound-induced ??-glucosidase that hydrolyzes cell wall-??-glucan-derived oligosaccharides and glycosides.	Plant Sci.	179(3)	273-280	2010		
32752	20581303	Je B.I., Piao H.L., Park S.J., Park S.H., Kim C.M., Xuan Y.H., Park S.H., Huang J., Do Choi Y., An G., Wong H.L., Fujioka S., Kim M.-C., Shimamoto K., Han C.-D.	RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.	Plant Cell	22(6)	1777-1791	2010	D11,_,BZR1,BRD1,D61,D2	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,RAVL1, RAVL ,OsBZR1, Os BZR1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 
32753	20852032	Du H,Wang N,Cui F,Li X,Xiao J,Xiong L	Characterization of the beta-carotene hydroxylase gene DSM2 conferring drought and oxidative stress resistance by increasing xanthophylls and abscisic acid synthesis in rice.	Plant Physiol.	154(3)	1304-18	2010	_,_,_	OsBCH3, OsHYD2,OsBCH2, BCH2, OsHYD1, HYD1,DSM2, OsDSM2, OsBCH1, OsHYD3
32754	20862512	Takayanagi S,Takagi Y,Araki R,Hasegawa H	High-affinity nitrate uptake by rice (Oryza sativa) coleoptiles.	J. Plant Res.	124	305-9	2011	NAR2.1,NRT2.4,NAR2.2,NRT2.2,NRT2.3,NRT2.1	OsNAR2.1, OsNRT3.1A,OsNRT2.4,OsNAR2.2, OsNRT3.1B,OsNRT2.2, OsNRT2.1,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2
32755	20872132	Liu Y,Zhu XY,Zhang S,Bernardo M,Edwards J,Galbraith DW,Leach J,Zhang G,Liu B,Leung H	Dissecting quantitative resistance against blast disease using heterogeneous inbred family lines in rice.	Theor. Appl. Genet.	122(2)	341-53	2011		
32756	20872210	Mao D,Yu H,Liu T,Yang G,Xing Y	Two complementary recessive genes in duplicated segments control etiolation in rice.	Theor. Appl. Genet.	122(2)	373-83	2011		
32757	20878142	Win KT,Yamagata Y,Miyazaki Y,Doi K,Yasui H,Yoshimura A	Independent evolution of a new allele of F1 pollen sterility gene S27 encoding mitochondrial ribosomal protein L27 in Oryza nivara.	Theor. Appl. Genet.	122(2)	385-94	2011	RPL27-2,RPL27-1	rpl27-2, rpl27, mtRPL27a, S27,rpl27-1, rpl27, mtRPL27b, S27
32758	20938764	Xu J,Wang B,Wu Y,Du P,Wang J,Wang M,Yi C,Gu M,Liang G	Fine mapping and candidate gene analysis of ptgms2-1, the photoperiod-thermo-sensitive genic male sterile gene in rice (Oryza sativa L.).	Theor. Appl. Genet.	122(2)	365-72	2011		
32759	20940062	Bisht NK,Abbruzzetti S,Uppal S,Bruno S,Spyrakis F,Mozzarelli A,Viappiani C,Kundu S	Ligand migration and hexacoordination in type 1 non-symbiotic rice hemoglobin.	Biochim. Biophys. Acta			2011		
32760	20974950	Mao H,Sun S,Yao J,Wang C,Yu S,Xu C,Li X,Zhang Q	Linking differential domain functions of the GS3 protein to natural variation of  grain size in rice.	Proc. Natl. Acad. Sci. U.S.A.	107(45)	19579-84	2010	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
32761	21041675	Morita H,Wanibuchi K,Nii H,Kato R,Sugio S,Abe I	Structural basis for the one-pot formation of the diarylheptanoid scaffold by curcuminoid synthase from Oryza sativa.	Proc. Natl. Acad. Sci. U.S.A.	107(46)	19778-83	2010		
32762	21046066	Juwattanasomran R,Somta P,Chankaew S,Shimizu T,Wongpornchai S,Kaga A,Srinives P	A SNP in GmBADH2 gene associates with fragrance in vegetable soybean variety "Kaori" and SNAP marker development for the fragrance.	Theor. Appl. Genet.	122(3)	533-41	2011		
32764	21107518	Wang C,Chen S,Yu S	Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice.	Theor. Appl. Genet.	122(5)	905-13	2011		
32765	21132425	Babu R,Jiang CJ,Xu X,Kottapalli KR,Takatsuji H,Miyao A,Hirochika H,Kawasaki S	Isolation, fine mapping and expression profiling of a lesion mimic genotype, spl  ( NF4050-8 ) that confers blast resistance in rice.	Theor. Appl. Genet.	122(4)	831-54	2011		
32766	21140255	Wu X,Zuo S,Chen Z,Zhang Y,Zhu J,Ma N,Tang J,Chu C,Pan X	Fine mapping of qSTV11 ( TQ ), a major gene conferring resistance to rice stripe  disease.	Theor. Appl. Genet.	122(5)	915-23	2011		
32767	21153625	Yuan B,Zhai C,Wang W,Zeng X,Xu X,Hu H,Lin F,Wang L,Pan Q	The Pik-p resistance to Magnaporthe oryzae in rice is mediated by a pair of closely linked CC-NBS-LRR genes.	Theor. Appl. Genet.	122(5)	1017-28	2010	PIKP,PIK	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
32768	21156329	Rae AL,Casu RE,Perroux JM,Jackson MA,Grof CP	A soluble acid invertase is directed to the vacuole by a signal anchor mechanism.	J. Plant Physiol.	168(9)	983-9	2010		
32769	21156806	Nozoye T,Nagasaka S,Kobayashi T,Takahashi M,Sato Y,Sato Y,Uozumi N,Nakanishi H,Nishizawa NK	Phytosiderophore efflux transporters are crucial for iron acquisition in graminaceous plants.	J. Biol. Chem.	286(7)	5446-54	2011	NAAT2,YSL1,YSL10,ENA1,NAAT3,NAAT4,DMAS1,NAAT1,YSL3,NAAT5,TOM1,YSL2,ZIFL5,YSL6,YSL5,YSL4	OsNAAT2,OsYSL1, OsYs1,OsYSL10,OsENA1,OsNAAT3,OsNAAT4, OsNAAT1 ,OsDMAS1,OsNAAT1,OsYSL3, OsYs16 ,OsNAAT5,OsTOM1, ZIFL4, OsZIFL4 ,OsYSL2, Os-YSL2, OsYs6 ,OsZIFL5, OsTOM2, TOM2,OsYSL6, OsYs8 ,OsYSL5, OsYs9 ,OsYSL4, OsYs17 
32770	21161500	Shao Y,Jin L,Zhang G,Lu Y,Shen Y,Bao J	Association mapping of grain color, phenolic content, flavonoid content and antioxidant capacity in dehulled rice.	Theor. Appl. Genet.	122(5)	1005-16	2011		
32771	21169347	Sharoni AM,Nuruzzaman M,Satoh K,Shimizu T,Kondoh H,Sasaya T,Choi IR,Omura T,Kikuchi S	Gene Structures, Classification and Expression Models of the AP2/EREBP Transcription Factor Family in Rice.	Plant Cell Physiol.	52(2)	344-60	2011		
32772	21172955	Du H,Liang Y,Pei K,Ma K	UV Radiation-Responsive Proteins in Rice Leaves: A Proteomic Analysis.	Plant Cell Physiol.	52(2)	306-16	2011		
32773	21205035	Kang K,Park S,Natsagdorj U,Kim YS,Back K	Methanol is an endogenous elicitor molecule for the synthesis of tryptophan and tryptophan-derived secondary metabolites upon senescence of detached rice leaves.	Plant J.	66(2)	247-57	2011		
32774	21205822	Im CH,Hwang SM,Son YS,Heo JB,Bang WY,Swasticka IN,Shiina T,Bahk JD	Nuclear/nucleolar GTPase 2 proteins as a subfamily of YlqF/YawG GTPases function  in pre-60S ribosomal subunit maturation of mono- and di-cotyledonous plants.	J. Biol. Chem.	286(10)	8620-32	2011	_,_,_,_,EBP-89	OsRPL10Ac1, OsL10a,OsNug2,,OsSTK1,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89
32775	21209101	Yu Q,Ghisla S,Hirschberg J,Mann V,Beyer P	Plant carotene cis-trans isomerase CRTISO: a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions.	J. Biol. Chem.	286(10)	8666-76	2011		
32776	21216027	Chou TS,Chao YY,Huang WD,Hong CY,Kao CH	Effect of magnesium deficiency on antioxidant status and cadmium toxicity in rice seedlings.	J. Plant Physiol.	168(10)	1021-30	2011	IRT1,ZIP3	OsIRT1,OsZIP3
32777	21219509	Sabot F,Picault N,Elbaidouri M,Llauro C,Chaparro C,Piegu B,Roulin A,Guiderdoni E,Delabastide M,McCombie R,Panaud O	Transpositional landscape of rice genome revealed by Paired-End Mapping of high-throughput resequencing data.	Plant J.	66(2)	241-6	2011		
32778	21220310	Jiang N,Ferguson AA,Slotkin RK,Lisch D	Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition.	Proc. Natl. Acad. Sci. U.S.A.	108(4)	1537-42	2011		
32779	21220762	Dionisio G,Madsen CK,Holm PB,Welinder KG,Jorgensen M,Stoger E,Arcalis E,Brinch-Pedersen H	Cloning and Characterization of Purple Acid Phosphatase Phytases from Wheat (Triticum aestivum L.), Barley (Hordeum vulgare L.), Maize (Zea maize L.) and Rice (Oryza sativa L.).	Plant Physiol.	156(3)	1087-1100	2011	PAP15	OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1
32780	21223397	Wakasa Y,Yasuda H,Oono Y,Kawakatsu T,Hirose S,Takahashi H,Hayashi S,Yang L,Takaiwa F	Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm.	Plant J.	65(5)	675-89	2010	_,_,BZIP60,_,_,_,_,_,GLUD1,_,_,_,_,_,_,GLU7,CNX,GLUA1,GLUA2,GLUB4,GLUC,GLUB1,GLB1	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsbZIP60, bZIP60,PDIL2;3, PDIL2-3, PDIL 2-3, OsPDIL2-3, PDIL 2-3,NEF,OsBiP2, Bip2,OsBiP3, BiP3,PDIL1;4, PDIL1-4, PDIL 1-4, OsPDIL1-4,GluD1, GluD-1, OsEnS-33, EnS-33,CRT, OsCRT,Hsr203j, OsHsr203j,Stt3a, STT3,OsDER2, DER2,OsDjB6, OsERdj3B,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,OsCNX, OsCNX1, CNX1,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,GluB4, GluB-5,GluC, OsEnS-36, EnS-36, GLU2.2,GluB1, GluB1-A, GluB-1, OsGluB1,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77
32781	21224427	Isayenkov S,Isner JC,Maathuis FJ	Rice Two-Pore K+ Channels Are Expressed in Different Types of Vacuoles.	Plant Cell	23(2j	756-68	2011	TPKB,TPKA	TPKb, OsTPKb,TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a
32782	21229229	Ebana K,Shibaya T,Wu J,Matsubara K,Kanamori H,Yamane H,Yamanouchi U,Mizubayashi T,Kono I,Shomura A,Ito S,Ando T,Hori K,Matsumoto T,Yano M	Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars.	Theor. Appl. Genet.	122(6)	1199-210	2011	HD9,HD7,HD9,HD6,RFT1,HD2,HD16,HD3A,GHD7,SE1,HD5	Hd9, qHd9,Hd7(t), qHD7(t),Hd9(t), qHD9(t),Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
32783	21239643	Fukao T,Yeung E,Bailey-Serres J	The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence  and Drought Tolerance in Rice.	Plant Cell	23(1)	412-27	2011	APX1,CATC,DHN1,SODA1,CATA,CATB,DREB1A,DREB1E,SUB1C,APX2,ERF3,SALT,SUB1A,SUB1B,RAB16A,LEA3-1,ERF91	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3
32784	21241786	Geng S,Zhao Y,Tang L,Zhang R,Sun M,Guo H,Kong X,Li A,Mao L	Molecular evolution of two duplicated CDPK genes CPK7 and CPK12 in grass species: A case study in wheat (Triticum aestivum L.).	Gene	475(2)	94-103	2011		
32785	21246257	Turoczy Z,Kis P,Torok K,Cserhati M,Lendvai A,Dudits D,Horvath GV	Overproduction of a rice aldo-keto reductase increases oxidative and heat stress  tolerance by malondialdehyde and methylglyoxal detoxification.	Plant Mol. Biol.	75(4-5)	399-412	2011	AKR3,ARK1,AKR2	OsAKR3, OsALR1, ALR1 ,OsARK1,OsAKR2, AKR4C14
32786	21251103	Ishikawa R,Ohnishi T,Kinoshita Y,Eiguchi M,Kurata N,Kinoshita T	Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division.	Plant J.	65(5)	798-806	2010		
32787	21251104	Yan Y,Zhang Y,Yang K,Sun Z,Fu Y,Chen X,Fang R	Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice.	Plant J.	65(5)	820-8	2010		
32788	21251105	Cai Y,Jia T,Lam SK,Ding Y,Gao C,San MW,Pimpl P,Jiang L	Multiple cytosolic and transmembrane determinants are required for the trafficking of SCAMP1 via an ER-Golgi-TGN-PM pathway.	Plant J.	65(6)	882-96	2010	SCAMP1	Scamp1, OsSCAMP1
32789	21251107	Takahashi M,Teranishi M,Ishida H,Kawasaki J,Takeuchi A,Yamaya T,Watanabe M,Makino A,Hidema J	Cyclobutane pyrimidine dimer (CPD) photolyase repairs ultraviolet-B-induced CPDs  in rice chloroplast and mitochondrial DNA.	Plant J.	66(3)	433-42	2011		
32790	21251109	Okuyama Y,Kanzaki H,Abe A,Yoshida K,Tamiru M,Saitoh H,Fujibe T,Matsumura H,Shenton M,Galam DC,Undan J,Ito A,Sone T,Terauchi R	A multi-faceted genomics approach allows the isolation of rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes.	Plant J.	66(3)	467-79	2011		
32791	21255162	Kusano M,Tabuchi M,Fukushima A,Funayama K,Diaz C,Kobayashi M,Hayashi N,Tsuchiya YN,Takahashi H,Kamata A,Yamaya T,Saito K	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in  coordinating metabolic balance in rice.	Plant J.	66(3)	456-66	2011	GS2,GDH2,GLN1;2,_,GLN1;1,GLT2,ABC1,GLT1,GDH1	OsGS2, GLN2, RGS31,OsGDH2,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsGDH1
32792	21263038	Zhu B,Si L,Wang Z,Zhu J,Shangguan Y,Lu D,Zhou Y,Fan D,Li C,Lin H,Qian Q,Sang T,Zhou B,Minobe Y,Han B	Genetic Control of a Transition from Black to Straw-white Seed Hull in Rice Domestication.	Plant Physiol.	155i3)	1301-11	2011	BH4	Bh4, OsATL14, ATL14
32793	21264494	Dai X,You C,Chen G,Li X,Zhang Q,Wu C	OsBC1L4 encodes a COBRA-like protein that affects cellulose synthesis in rice.	Plant Mol. Biol.	75(4-5)	333-45	2011	BC1L4,CESA7,BC6,CESA8,CESA3,CESA1	OsBC1L4,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA3, OsCESA3, OS_CESA03,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1
32794	21266659	Wang X,Tang H,Paterson AH	Seventy Million Years of Concerted Evolution of a Homoeologous Chromosome Pair, in Parallel, in Major Poaceae Lineages.	Plant Cell	23(1)	27-37	2011		
32795	21274511	Chen S,Liu X,Zeng L,Ouyang D,Yang J,Zhu X	Genetic analysis and molecular mapping of a novel recessive gene xa34(t) for resistance against Xanthomonas oryzae pv. oryzae.	Theor. Appl. Genet.	122(7)	1331-8	2011	XA34	xa34(t)
32796	21278127	Onda Y,Nagamine A,Sakurai M,Kumamaru T,Ogawa M,Kawagoe Y	Distinct Roles of Protein Disulfide Isomerase and P5 Sulfhydryl Oxidoreductases in Multiple Pathways for Oxidation of Structurally Diverse Storage Proteins in Rice.	Plant Cell	23(1)	210-23	2011	_,_,GLB1,_,_,_,_,_,_	RA17, RAP, RAG1, OsEnS-97,OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,BiP,ERO1, Ero1,Prol-01, CysR10, crP10, pro10.1,PDIL2;3, PDIL2-3, PDIL 2-3, OsPDIL2-3, PDIL 2-3,PDIL1;4, PDIL1-4, PDIL 1-4, OsPDIL1-4
32797	21282525	Zhou S,Wang Y,Li W,Zhao Z,Ren Y,Wang Y,Gu S,Lin Q,Wang D,Jiang L,Su N,Zhang X,Liu L,Cheng Z,Lei C,Wang J,Guo X,Wu F,Ikehashi H,Wang H,Wan J	Pollen Semi-Sterility1 Encodes a Kinesin-1-Like Protein Important for Male Meiosis, Anther Dehiscence, and Fertility in Rice.	Plant Cell	23(1)	111-29	2011	PSS1	pss1, OsPSS1
32798	21284756	Matsubara K,Yamanouchi U,Nonoue Y,Sugimoto K,Wang ZX,Minobe Y,Yano M	Ehd3, encoding a PHD finger-containing protein, is a critical promoter of rice flowering.	Plant J.	66(4)	603-12	2011	EHD3	Ehd3
32799	21293909	Kang M,Fokar M,Abdelmageed H,Allen RD	Arabidopsis SAP5 functions as a positive regulator of stress responses and exhibits E3 ubiquitin ligase activity.	Plant Mol. Biol.	75(4-5)	451-66	2011		
32800	21297036	Hu L,Liang W,Yin C,Cui X,Zong J,Wang X,Hu J,Zhang D	Rice MADS3 Regulates ROS Homeostasis during Late Anther Development.	Plant Cell	23(2)	515-33	2011	MTI4C,RAG	MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1
32801	21307283	Zhang Z,Zhang Y,Tan H,Wang Y,Li G,Liang W,Yuan Z,Hu J,Ren H,Zhang D	RICE MORPHOLOGY DETERMINANT Encodes the Type II Formin FH5 and Regulates Rice Morphogenesis.	Plant Cell	23(2)	681-700	2011	BUI1	BUI1, FH5, FH5/BUI1, RMD, OsFH5, FH5/RMD 
32802	21307285	Yang W,Ren S,Zhang X,Gao M,Ye S,Qi Y,Zheng Y,Wang J,Zeng L,Li Q,Huang S,He Z	BENT UPPERMOST INTERNODE1 Encodes the Class II Formin FH5 Crucial for Actin Organization and Rice Development.	Plant Cell	23(2)	661-80	2011	BUI1	BUI1, FH5, FH5/BUI1, RMD, OsFH5, FH5/RMD 
32803	21309865	Ito Y,Kimura F,Hirakata K,Tsuda K,Takasugi T,Eiguchi M,Nakagawa K,Kurata N	Fatty acid elongase is required for shoot development in rice.	Plant J.	66(4)	680-8	2011	OSH1,_	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,ONI1
32804	21309868	Zhiming Y,Bo K,Xiaowei H,Shaolei L,Youhuang B,Wona D,Ming C,Hyung-Taeg C,Ping W	Root hair-specific EXPANSINs modulate root hair elongation in rice.	Plant J.	66(5)	725-34	2011	EXPA30,RTH1,RHL1,EXPA17,EXPA11,EXPA13,EXPA22,EXPA12,EXPB5,EXPA15	OsEXPA30,OsAPY, RTH1,RHL1, OsRHL1,OsEXPA17, OsEXP17, osaEXPa1.31,OsEXPA11, OsEXP11, osaEXPa1.25,OsEXPA13, OsEXP13, osaEXPa1.13,OsEXPA22, OsEXP22, osaEXPa1.9,OsEXPA12, OsEXP12, osaEXPa1.15,OxEXPB5, osaEXPb1.19,OsEXPA15, OsEXP15, osaEXPa1.8
32805	21309870	Meyer T,Holscher C,Schwoppe C,von Schaewen A	Alternative targeting of Arabidopsis plastidic glucose 6-phosphate dehydogenase 1 (G6PD1) involves cysteine-dependent interaction with G6PD4 in the cytosol.	Plant J.	66(5)	745-58	2011		
32806	21316795	Liu Y,Xu Y,Xiao J,Ma Q,Li D,Xue Z,Chong K	OsDOG, a gibberellin-induced A20/AN1 zinc-finger protein, negatively regulates gibberellin-mediated cell elongation in rice.	J. Plant Physiol.	168(10)	1098-105	2011	GA2OX1,GA2OX3,EUI1,SAP11	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsDOG, OsSAP11, DOG
32808	21318369	Mall TK,Dweikat I,Sato SJ,Neresian N,Xu K,Ge Z,Wang D,Elthon T,Clemente T	Expression of the rice CDPK-7 in sorghum: molecular and phenotypic analyses.	Plant Mol. Biol.	75(4-5)	467-79	2011		
32809	21318372	Qiao Y,Piao R,Shi J,Lee SI,Jiang W,Kim BK,Lee J,Han L,Ma W,Koh HJ	Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.).	Theor. Appl. Genet.	122(7)	1439-49	2011	DEP3	dep3, OspPLAIIIdelta, pPLAIIIdelta
32810	21325138	Li J,Jiang J,Qian Q,Xu Y,Zhang C,Xiao J,Du C,Luo W,Zou G,Chen M,Huang Y,Feng Y,Cheng Z,Yuan M,Chong K	Mutation of Rice BC12/GDD1, Which Encodes a Kinesin-Like Protein That Binds to a  GA Biosynthesis Gene Promoter, Leads to Dwarfism with Impaired Cell Elongation.	Plant Cell	23(2)	628-40	2011	BC12	bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12
32811	21327937	Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY	High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.	Theor. Appl. Genet.	122(8)	1489-96	2011	GW8	SPL16, OsSPL16, SLP1, qGW8
32812	21331630	Ogo Y,Itai RN,Kobayashi T,Aung MS,Nakanishi H,Nishizawa NK	OsIRO2 is responsible for iron utilization in rice and improves growth and yield  in calcareous soil.	Plant Mol. Biol.	75(6)	593-605	2011		
32813	20926385	Zhang M., Lu S., Li G., Mao Z., Yu X., Sun W., Tang Z., Long M., Su W.	Identification of a residue in helix 2 of rice plasma membrane intrinsic proteins that influences water permeability.	J. Biol. Chem.	285(53)	41982-92	2010		
32814	21178306	Ishikawa R., Thanh P.T., Nimura N., Htun T.M., Yamasaki M., Ishii T.	Allelic interaction at seed-shattering loci in the genetic backgrounds of wild and cultivated rice species.	Genes Genet. Syst.	85(4)	265-271	2010		
32815	21217807	Liu X., Wan X., Ma X., Wan J.	Dissecting the genetic basis for the effect of rice chalkiness, amylose content, protein content, and rapid viscosity analyzer profile characteristics on the eating quality of cooked rice using the chromosome segment substitution line population across eight environments.	Genome	54(1)	64-80	2010		
32816	21037241	Kawakatsu T., Takaiwa F.	Differences in transcriptional regulatory mechanisms functioning for free lysine content and seed storage protein accumulation in rice grain.	Plant Cell Physiol.	51(12)	1964-1974	2010	_,RISBZ1,RPBF	OsLKR/SDH, OsLKR, OsSDH,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF
32817	20938801	Duan Y., Diao Z., Liu H., Cai M., Wang F., Lan T., Wu W.	Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.).	Plant Mol. Biol.	74(6)	605-615	2010		
32818	21062870	Fujita M., Horiuchi Y., Ueda Y., Mizuta Y., Kubo T., Yano K., Yamaki S., Tsuda K., Nagata T., Niihama M., Kato H., Kikuchi S., Hamada K., Mochizuki T., Ishimizu T., Iwai H., Tsutsumi N., Kurata N.	Rice expression atlas in reproductive development.	Plant Cell Physiol.	51(12)	2060-2081	2010	SAUR9,CSLA1,CSLD3,CSLD5	OsSAUR9,OsCslA1, OsCSLA1 ,OsCSLD3,OsCSLD5
32819	20941508	Shen J., Xie K., Xiong L.	Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses.	Mol. Genet. Genomics	284(6)	477-488	2010		
32820	20949308	You C., Dai X., Li X., Wang L., Chen G., Xiao J., Wu C.	Molecular characterization, expression pattern, and functional analysis of the OsIRL gene family encoding intracellular Ras-group-related LRR proteins in rice.	Plant Mol. Biol.	74(6)	617-629	2010	_,_,_,PI55-1,_,_,_,_	OsIRL1,OsIRL2,OsIRL7,pi55-1, pi55(t), OsIRL4,OsIRL3, IRL3,OsIRL8,OsIRL5,OsIRL6 
32821	21097897	Shih M.-D., Huang L.-T., Wei F.-J., Wu M.-T., Hoekstra F.A., Hsing Y.-I.C.	OsLEA1a, a new Em-like protein of cereal plants.	Plant Cell Physiol.	51(12)	2132-2144	2010	LEA20	OsLEA20, OsLEA1, OsLEA1a
32822	21051443	Matsui H., Miyao A., Takahashi A., Hirochika H.	Pdk1 kinase regulates basal disease resistance through the OsOxi1-OsPti1a phosphorylation cascade in rice.	Plant Cell Physiol.	51(12)	2082-2091	2010	_,_,RLCK178	OsOxi1,PDK1, OsPdk1, Pdk1,OsPti1a, OsRLCK178
32823		Ye C., Fukai S., Godwin I.D., Koh H., Reinke R., Zhou Y., Lambrides C., Jiang W., Snell P., Redona E.	A QTL controlling low temperature induced spikelet sterility at booting stage in rice.	Euphytica	176(3)	291-301	2010		
32824		Jiang S., Zhang X., Wang J., Chen W., Xu Z.	Fine mapping of the quantitative trait locus qFLL9 controlling flag leaf length in rice.	Euphytica	176(3)	341-347	2010		
32825	20971065	Banerjee J., Das N., Dey P., Maiti M.K.	Transgenically expressed rice germin-like protein1 in tobacco causes hyper-accumulation of H2O2 and reinforcement of the cell wall components.	Biochem. Biophys. Res. Commun.	402(4)	637-643	2010		
32826	20876569	Cheung M.-Y., Xue Y., Zhou L., Li M.-W., Sun S.S.-M., Lam H.-M.	An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein.	J. Biol. Chem.	285(48)	37359-69	2010	_,_	OsYchF1, YchF1, OsPM8ATP ,OsGAP1, GAP1
32827	21107422	Chen L.-Q., Hou B.-H., Lalonde S., Takanaga H., Hartung M.L., Qu X.-Q., Guo W.-J., Kim J.-G., Underwood W., Chaudhuri B., Chermak D., Antony G., White F.F., Somerville S.C., Mudgett M.B., Frommer W.B.	Sugar transporters for intercellular exchange and nutrition of pathogens.	Nature	468(7323)	527-532	2010	SWEET3B,SWEET2A,SWEET6A,SWEET6B,SWEET2B,SWEET1A,SWEET1B,SWEET16,SWEET7E,SWEET7D,SWEET13,11N3,SWEET4,SWEET3A,SWEET7C,SWEET7B,SWEET15,SWEET12,SWEET5	OsSWEET3b, SWEET3b,OsSWEET2a, SWEET2a,OsSWEET6a, SWEET6a,OsSWEET6b, SWEET6b,OsSWEET2b, SWEET2b,OsSWEET1a, SWEET1a,OsSWEET1b, SWEET1b,OsSWEET16,OsSWEET7e, SWEET7e,OsSWEET7d, SWEET7d,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,OsSWEET4,OsSWEET3a, SWEET3a,OsSWEET7c, SWEET7c,OsSWEET7b, SWEET7b,OsSWEET15,OsSWEET12,OsSWEET5
32828		Shim J., Panaud O., Vitte C., Mendioro M.S., Brar D.S.	RDA derived Oryza minuta-specific clones to probe genomic conservation across Oryza and introgression into rice (O. sativa L.).	Euphytica	176(2)	269-279	2010		
32829	20888318	Seok H.-Y., Park H.-Y., Park J.-I., Lee Y.-M., Lee S.-Y., An G., Moon Y.-H.	Rice ternary MADS protein complexes containing class B MADS heterodimer.	Biochem. Biophys. Res. Commun.	401(4)	598-604	2010		
32830	20937890	Xia J., Yamaji N., Kasai T., Ma J.F.	Plasma membrane-localized transporter for aluminum in rice.	Proc. Natl. Acad. Sci. U.S.A.	107(43)	18381-5	2010	NRAMP4,ART1	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,ART1, STAR3
32831	20878348	Park G.-G., Park J.-J., Yoon J., Yu S.-N., An G.	A RING finger E3 ligase gene, Oryza sativa Delayed Seed Germination 1 (OsDSG1), controls seed germination and stress responses in rice.	Plant Mol. Biol.	74(4)	467-478	2010	DSG1	OsDSG1, DSG1
32832	20849820	Tanaka K., Umeki N., Mitsui T., Fujimoto Z., Maruta S.	Crystallographic analysis reveals a unique conformation of the ADP-bound novel rice kinesin K16.	Biochemical and Biophysical Research Communications	401(2)	251-256	2010		
32833	20713616	Fu F.-F., Xue H.-W.	Coexpression analysis identifies rice starch regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulator.	Plant Physiol.	154(2)	927-938	2010	RSR1,PUL	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1,OsPUL, SDBE, OsPUL3, RE
32836	20962882	Iwata N., Fujino K.	Genetic effects of major QTLs controlling lowtemperature germinability in different genetic backgrounds in rice (Oryza sativa L.).	Genome	53(10)	763-768	2010		
32837		Shen X., Yuan B., Liu H., Li X., Xu C., Wang S.	Opposite functions of a rice mitogen-activated protein kinase during the process of resistance against Xanthomonas oryzae.	Plant J.	64(1)	86-99	2010		
32838	21070404	Shimizu T., Nakano T., Takamizawa D., Desaki Y., Ishii-Minami N., Nishizawa Y., Minami E., Okada K., Yamane H., Kaku H., Shibuya N.	Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice.	Plant J.	64(2)	204-214	2010	KS4,_,_,_,_,_,_,RLCK276,RLCK330,_,CEBiP,_	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsLysM-RLK2, OsLYK5,OsLysM-RLK3, OsLYK1,OsLysM-RLK4,OsLysM-RLK5, OsLYK2,OsLysM-RLK6, OsLYK3,OsLysM-RLK7, OsLYK6,OsLysM-RLK10, OsRLCK276,OsLysM-RLK8, OsRLCK330,OsLysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2,CEBIP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9
32839	21115813	Wilson R.A., Gibson R.P., Quispe C.F., Littlechild J.A., Talbot N.J.	An NADPH-dependent genetic switch regulates plant infection by the rice blast fungus.	Proc. Natl. Acad. Sci. U.S.A.	107(50)	21902-7	2010		
32840	20940349	Kawakatsu T., Hirose S., Yasuda H., Takaiwa F.	Reducing rice seed storage protein accumulation leads to changes in nutrient quality and storage organelle formation.	Plant Physiol.	154(4)	1842-1854	2010		
32841	20959420	Tang X., Zhang Z.-Y., Zhang W.-J., Zhao X.-M., Li X., Zhang D., Liu Q.-Q., Tang W.-H.	Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.	Plant Physiol.	154(4)	1855-1870	2010	TOP6A1,RAD21-4,GA20OX1,D18,GID1,SD1,ZEP1,EUI1,GAMYBL1,GAMYBL2,SLRL1,GA2OX2,SDS,GA20OX4,MEL1,RAD51A1,GA20OX3,SLRL2,GA2OX1,SPY,CPS1,HD16,PAIR3,KS1,RPA1A,GA2OX6,GA2OX3,GA3OX1,D35,GA2OX5,GA2OX8,KAO	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,gid1, OsGID1, Thl, Os GID1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsZEP1,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsGAMYBL1,OsGAMYBL2,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsSDS, Orysa;SDS,OsGA20ox4, ga20ox4,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsRAD51A1,OsGA20ox3, ga20ox3,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsSPY,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsRPA70a, OsRPA1a, RPA1a,OsGA2ox6,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA3ox1, GA3ox1, OsGA3OX1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox8,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1
32842	21105928	Wang Y., Ren Y., Liu X., Jiang L., Chen L., Han X., Jin M., Liu S., Liu F., Lv J., Zhou K., Su N., Bao Y., Wan J.	OsRab5a regulates endomembrane organization and storage protein trafficking in rice endosperm cells.	Plant J.	64(5)	812-824	2010	GLUP4,GLUP3	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3
32843	20924648	Sugano S., Jiang C.-J., Miyazawa S.-I., Masumoto C., Yazawa K., Hayashi N., Shimono M., Nakayama A., Miyao M., Takatsuji H.	Role of OsNPR1 in rice defense program as revealed by genome-wide expression analysis.	Plant Mol. Biol.	74(6)	549-562	2010	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
32844	21062869	Lin S.-I., Santi C., Jobet E., Lacut E., El Kholti N., Karlowski W.M., Verdeil J.-L., Breitler J.C., Perin C., Ko S.-S., Guiderdoni E., Chiou T.-J., Echeverria M.	Complex regulation of two target genes encoding SPX-MFS proteins by rice miR827 in response to phosphate starvation.	Plant Cell Physiol.	51(12)	2119-2131	2010	_,_,miR827,_	OsSPX-MFS2, SPX-MFS2 ,OsSPX-MFS1, SPX-MFS1,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsRFPHC-13, OsNLA, NAL, OsNLA1, NAL1
32845	21041976	Konishi S., Sasakuma T., Sasanuma T.	Identification of novel Mlo family members in wheatand their genetic characterization.	Genes Genet. Syst.	85(3)	167-175	2010		
32846	21098734	Antony G., Zhou J., Huang S., Li T., Liu B., White F., Yang B.	Rice xa13 recessive resistance to bacterial blight is defeated by induction of the disease susceptibility gene Os-11N3.	Plant Cell	22(11)	3864-3876	2010	XA13,11N3	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14
32847	21098733	Yamamoto Y., Hirai T., Yamamoto E., Kawamura M., Sato T., Kitano H., Matsuoka M., Ueguchi-Tanakaa M.	A rice gid1 suppressor mutant reveals that gibberellin is not always required for interaction between its receptor, GID1, and DELLA proteins.	Plant Cell	22(11)	3589-3602	2010		
32852	20889913	She K.-C., Kusano H., Koizumi K., Yamakawa H., Hakata M., Imamura T., Fukuda M., Naito N., Tsurumaki Y., Yaeshima M., Tsuge T., Matsumoto K., Kudoh M., Itoh E., Kikuchi S., Kishimoto N., Yazaki J., Ando T., Yano M., Aoyama T., Sasaki T., Satoh H., Shimad H.	A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality.	Plant Cell	22(10)	3280-3294	2010	FLO2,_,_	flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 ,FLL2,FLL1
32853	21070413	Kishimoto K., Kouzai Y., Kaku H., Shibuya N., Minami E., Nishizawa Y.	Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice.	Plant J.	64(2)	343-354	2010	CEBiP,XA21	CEBIP, Os-LYP1, LYP1, OsCEBiP,Xa21*, Xa21, OsXA21
32855	20884799	Barta A., Kalyna M., Reddy A.S.N.	Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants.	Plant Cell	22(9)	2926-2929	2010	RSZP36,RSZP39,SRP20,SCL25,RSZP37B,SC35A,SC35B,RSZP23,SCL30B,SCL57,SRP32,RSP29,SRP33A,SC35C,SRP33B,SCL28,RSZP21A,RSZP37A,RSP33,RSZP21B,SCL30A,SCL26	Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36,Os-RS2Z39, OsRS2Z39, Os-RSZ39, OsRSZ39,Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20,Os-SCL25, OsSCL25,Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b,Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a,OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b,Os-RSZ23, OsRSZ23, Os-RSZp23, OsRSZp23,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,Os-SCL57, OsSCL57,Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32,OsRS29, Os-RS29, OsRSp29, Os-RSp29,Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a,Os-SC25, OsSC25, Os-SC35c, OsSC35c,Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b,Os-SCL28, OsSCL28,Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a,Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a,OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2,Os-RSZ21, OsRSZ21, RSZ21, Os-RSZp21b, OsRSZp21b,Os-SCL30a, OsSCL30a, SCL30a,Os-SCL26, OsSCL26
32856	20950890	Fan W., Cui W., Li X., Chen S., Liu G., Shen S.	Proteomics analysis of rice seedling responses to ovine saliva.	J. Plant Physiol.	168(5)	500-509	2011		
32857		Fukayama H., Sugino M., Fukuda T., Masumoto C., Taniguchi Y., Okada M., Sameshima R., Hatanaka T., Misoo S., Hasegawa T., Miyao M.	Gene expression profiling of rice grown in free air CO2 enrichment (FACE) and elevated soil temperature.	Field Crops Research	121(1)	195-199	2011		
32858	20889230	Dubois V., Moritz T., Garcia-Martinez J.L.	Comparison of the role of gibberellins and ethylene in response to submergence of two lowland rice cultivars, Senia and Bomba.	J. Plant Physiol.	168(3)	233-241	2011		
32859	21056641	Han F., hu B.	Evolutionary analysis of three gibberellin oxidase genesin rice, Arabidopsis, and soybean.	Gene	473(1)	23-35	2011		
32860	21265890	Itabashi E., Iwata N., Fujii S., Kazama T., Toriyama K.	The fertility restorer gene, Rf2, for Lead Rice-type cytoplasmic male sterility of rice encodes a mitochondrial glycine-rich protein.	Plant J.	65(3)	359-367	2011	RF2	Rf2 (Rfx), Rfx, Rf2
32861	21115808	Skot L., Sanderson R., Thomas A., Skot K., Thorogood D., Latypova G., Asp T., Armstead I.	Allelic variation in the perennial ryegrass FLOWERING LOCUS T Gene is associated with changes in flowering time across a range of populations.	Plant Physiol.	155(2)	1013-1022	2011		
32862	21265893	Krattinger S.G., Lagudah E.S., Wicker T., Risk J.M., Ashton A.R., Selter L.L., Matsumoto T., Keller B.	Lr34 multi-pathogen resistance ABC transporter: Molecular analysis of homoeologous and orthologous genes in hexaploid wheat and other grass species.	Plant J.	65(3)	392-403	2011		
32863	21288266	Rouached H., Stefanovic A., Secco D., Bulak Arpat A., Gout E., Bligny R., Poirier Y.	Uncoupling phosphate deficiency from its major effects on growth and transcriptome via PHO1 expression in Arabidopsis.	Plant J.	65(4)	557-570	2011		
32864		Suh J.-P., Yang S.-J., Jeung J.-U., Pamplona A., Kim J.-J., Lee J.-H., Hong H.-C., Yang C.-I., Kim Y.-G., Jena K.K.	Development of elite breeding lines conferring Bph18 gene-derived resistance to brown planthopper (BPH) by marker-assisted selection and genome-wide background analysis in japonica rice (Oryza sativa L.).	Field Crops Research	120(2)	215-222	2011		
32865		Ohsumi A., Takai T., Ida M., Yamamoto T., Arai-Sanoh Y., Yano M., Ando T., Kondo M.	Evaluation of yield performance in rice near-isogenic lines with increased spikelet number.	Field Crops Research	120(1)	68-75	2011		
32866	20960223	Fujino K., Sekiguchi H.	Origins of functional nucleotide polymorphisms in a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice.	Plant Mol. Biol.	75(1-2)	1-10	2011	qLTG-3-1(t)	qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5
32867	21175891	Ohmori Y., Toriba T., Nakamura H., Ichikawa H., Hirano H.-Y.	Temporal and spatial regulation of DROOPING LEAF gene expression that promotes midrib formation in rice.	Plant J.	65(1)	77-86	2011	DL	DL, dl(lop), lop, dl, dl1
32868	21136139	Asano T., Hakata M., Nakamura H., Aoki N., Komatsu S., Ichikawa H., Hirochika H., Ohsugi R.	Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice.	Plant Mol. Biol.	75(1)	179-191	2011	SOS1,RAB16A,P5CS,BZIP23,LEA3-1,CDPK21,NAC6,CDPK13,NHX1	OsSOS1, OsNHA1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsCDPK21, OsCPK21,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,OsNHX1
32869	21055780	Hong J.Y., Chae M.J., Lee I.S., Lee Y.N., Nam M.H., Kim D.Y., Byun M.O., Yoon I.S.	Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.	Phytochemistry	72(1)	27-36	2011	ABI5	OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 
32870	21112065	Ishihara A., Nakao T., Mashimo Y., Murai M., Ichimaru N., Tanaka C., Nakajima H., Wakasa K., Miyagawa H.	Probing the role of tryptophan-derived secondary metabolism in defense responses against Bipolaris oryzae infection in rice leaves by a suicide substrate of tryptophan decarboxylase.	Phytochemistry	72(1)	7-13	2011		
32871	21075959	Seo S., Mitsuhara I., Feng J., Iwai T., Hasegawa M., Ohashi Y.	Cyanide, a coproduct of plant hormone ethylene biosynthesis, contributes to the resistance of rice to blast fungus.	Plant Physiol.	155(1)	502-514	2011		
32872	21175892	Wang Q., Hillwig M.L., Peters R.J.	CYP99A3: Functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice.	Plant J.	65(1)	87-95	2011		
32873	21071600	Fu J., Liu H., Li Y., Yu H., Li X., Xiao J., Wang S.	Manipulating broad-spectrum disease resistance by suppressing pathogen-induced auxin accumulation in rice.	Plant Physiol.	155(1)	589-602	2011	GH3-2	OsGH3-2, OsGH3.2, GH3.2
32874	21161331	Chai C., Fang J., Liu Y., Tong H., Gong Y., Wang Y., Liu M., Wang Y., Qian Q., Cheng Z., Chu C.	ZEBRA2, encoding a carotenoid isomerase, is involved in photoprotection in rice.	Plant Mol. Biol.	75(3)	211-221	2011		
32875	21223385	Park J.-J., Yi J., Yoon J., Cho L.-H., Ping J., Jeong H.J., Cho S.K., Kim W.T., An G.	OsPUB15, an E3 ubiquitin ligase, functions to reduce cellular oxidative stress during seedling establishment.	Plant J.	65(2)	194-205	2011	PUB15	OsPUB15
32876		Qin X., Liu Y., Mao S., Li T., Wu H., Chu C., Wang Y.	Genetic transformation of lipid transfer protein encoding gene in Phalaenopsis amabilis to enhance cold resistance.	Euphytica	177(1)	33-43	2011		
32877	0	Ashikawa,I., Wu,J., Matsumoto,T. and Ishikawa,R.	Haplotype diversity and molecular evolution of the rice Pikm locus for blast resistance	J. Gen. Plant Pathol.	76(1)	37-42	2010	PIKM	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
32878	20580815	Chang,K.D., Fang,S.A., Chang,F.C. and Chung,M.C.	Chromosomal conservation and sequence diversity of ribosomal RNA genes of two distant Oryza species	Genomics	96(3)	181-190	2010	18S  rRNA,26S  rRNA	,
32879	0	Chen,J., Wan,J., Jiang,H., Gao,X., Wang,P., Xi,J. and Xu,Z.	Cloning and Expression Analysis of OsNADPH1 Gene from Rice in Drought Stress Response	Rice Science	13	149-154	2006	_	OsNADPH1, NADPH1
32880	20202129	Cho,J.I., Burla,B., Lee,D.W., Ryoo,N., Hong,S.K., Kim,H.B., Eom,J.S., Choi,S.B., Cho,M.H., Bhoo,S.H., Hahn,T.R., Ekkehard Neuhaus,H., Martinoia,E. and Jeon,J.S.	Expression analysis and functional characterization of the monosaccharide transporters, OsTMTs, involving vacuolar sugar transport in rice (Oryza sativa)	New Phytol.	186i3j	657-68	2010	TMT1,TMT2	OsTMT1,OsTMT2
32881	20229250	Dai,L., Wu,J., Li,X., Wang,X., Liu,X., Jantasuriyarat,C., Kudrna,D., Yu,Y., Wing,R.A., Han,B., Zhou,B. and Wang,G.L.	Genomic structure and evolution of the Pi2/9 locus in wild rice species	Theor. Appl. Genet.	121(2)	295-309	2010	PI9,PIZ,PIZT	Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
32882	19932463	Feng,Q., Huang,T., Zhao,Q., Zhu,J., Lin,Z. and Han,B.	Analysis of collinear regions of Oryza AA and CC genomes	J Genet Genomics	36(11)	667-677	2009		
32883	20963607	Fukuda,A., Nakamura,A., Hara,N., Toki,S. and Tanaka,Y.	Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes	Planta	233(1)	175-188	2011	NHX3,NHX5,NHX2,NHX4,NHX1	OsNHX3, OsNHX2, NHX2,OsNHX5,OsNHX2,OsNHX4,OsNHX1
32884	15032821	Fukuda,A., Okada,Y., Suzui,N., Fujiwara,T., Yoneyama,T. and Hayashi,H.	Cloning and characterization of the gene for a phloem-specific glutathione S-transferase from rice leaves	Physiol. Plantarum	120(4)	595-602	2004	RPP31	OsRPP31, OsGSTF6, GSTF6
32885	21249365	Gao,D., He,B., Zhou,Y. and Sun,L.	Genetic and molecular analysis of a purple sheath somaclonal mutant in japonica rice	Plant Cell Rep.	30(5)	901-11	2011	C	C, Cp, OsC1, Os-C1, OsMyb6, Myb6
32886	0	Gao,F., Chen,J.-M., Xiong,A.-S., Peng,R.-H., Liu,J.-G., Cai,B. and Yao,Q.-H.	Isolation and characterization of a novel AP2/EREBP-type transcription factor OsAP211 in Oryza sativa	Biol. Plant.	53(4)	643-649	2009	ERF35	OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211
32887	8811865	Groom,Q.J., Torres,M.A., Fordham-Skelton,A.P., Hammond-Kosack,K.E., Robinson,N.J. and Jones,J.D.G.	rbohA, a rice homologue of the mammalian gp91phox respiratory burst oxidase gene	Plant J.	10(3)	515-22	1996	RBOHA	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2
32888	20584133	Gross,B.L., Reagon,M., Hsu,S.C., Caicedo,A.L., Jia,Y. and Olsen,K.M.	Seeing red: the origin of grain pigmentation in US weedy rice	Mol. Ecol.	19(16)	3380-3393	2010	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
32889	21121088	Gross,B.L., Steffen,F.T. and Olsen,K.M.	The molecular basis of white pericarps in African domesticated rice: novel mutations at the Rc gene	J. Evol. Biol.	23(12)	2747-2753	2010	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
32890	20227044	Hong,L., Qian,Q., Zhu,K., Tang,D., Huang,Z., Gao,L., Li,M., Gu,M. and Cheng,Z.	ELE restrains empty glumes from developing into lemmas	J Genet Genomics	37(2)	101-115	2010	G1	g1 (lng), lng, g1, ELE, OsG1, G1/ELE
32891	21035096	Hui,L., Lu,L., Heng,Y., Qin,R., Xing,Y. and Jin,W.	Expression of CENH3 alleles in synthesized allopolyploid Oryza species	J Genet Genomics	37(10)	703-711	2010	CENH3	CENH3, CenH3
32893	20495565	Jiao,Y., Wang,Y., Xue,D., Wang,J., Yan,M., Liu,G., Dong,G., Zeng,D., Lu,Z., Zhu,X., Qian,Q. and Li,J.	Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice	Nat Genet	42(6)	541-544	2010	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
32894	23572921	Kanneganti,V. and Gupta,A.K.	Isolation and Expression analysis of OsPME1, encoding for a putative Pectin Methyl Esterase from Oryza sativa (subsp. indica)	Physiol. Mol. Plant Pathol.	15(2)	123-131	2009	PME1	OsPME11, OsPME1
32895	18818927	Kou,Y., Qiu,D., Wang,L., Li,X. and Wang,S.	Molecular analyses of the rice tubby-like protein gene family and their response to bacterial infection	Plant Cell Rep.	28(1)	113-121	2009	_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsTLP11, OsTLP10, OsFbox278, Os_F0631,OsTLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,OsTLP13, OsTLP4,OsTLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,OsTLP14, OsTLP6, OsFbox139, Os_F0681,OsTLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,OsTLP3, OsTLP7, OsFbox240, Os_F0401,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,OsTLP6, OsTLP13, OsFbox569, Os_F0461,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,OsTLP7, OsTLP11, OsFbox398, Os_F0421,OsTLP4, OsTLP14, OsFbox645, Os_F0315,OsTLP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446
32896	20450965	Kumagai,M., Wang,L. and Ueda,S.	Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA	Gene	462(1-2)	44-51	2010	_,_,_,NDHC,_,_,_	trnF(GAA), trnF, trnF-GAA,trnV, trnV(UAC), trnV-UAC,trnG(GCC), trnG, trnG-GCC, trnG-UCC,ndhC,ORF133,trnL(UAA), trnL, trnL-UAA,matK, ORF542 
32897	0	Larkin,P.D. and Park,W.D.	Association of waxy gene single nucleotide polymorphisms with starch characteristics in rice (Oryza sativa L.)	Molecular Breeding	12	335-339	2003	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
32898	20202171	Li,J., Pandeya,D., Nath,K., Zulfugarov,I.S., Yoo,S.C., Zhang,H., Yoo,J.H., Cho,S.H., Koh,H.J., Kim,D.S., Seo,H.S., Kang,B.C., Lee,C.H. and Paek,N.C.	ZEBRA-NECROSIS, a thylakoid-bound protein, is critical for the photoprotection of developing chloroplasts during early leaf development	Plant J.	62(4)	713-25	2010	_,_	OsZNL,ZN, OsZN
32899	0	Liu,N.-Y., Ko,S.-S., Yeh,K.-C. and Charng,Y.-Y.	Isolation and characterization of tomato Hsa32 encoding a novel heat-shock protein	Plant Sci.	170(5)	976-985	2006	HSA32	Hsa32, OsPPS1 
32900	0	Liu,X., Wang,L., Liu,X., Liu,X., Wang,D., Wang,C., Lin,F. and Pan,Q.	The molecular evolution of the rice blast resistance gene Pi36	Int. J. Plant Sci.	171(3)	235-243	2010	PI36	Pi36(t), Pi36
32901	17891605	Li,W., Jiang,G., Zeng,D. and Jin,Y.	Identification of six new box C/D snoRNA gene clusters from rice	IUBMB Life	59(10)	664-674	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	snoR54,snoR72,snoR69Y,snoR64Ya,snoR64Yb,snoR13Y,snoR180,snoR181,snoR182,snoR183,snoR184,snoR185,snoR186,snoR187,snoR188,snoR189,snoR190,snoR191
32902	20713469	Luo,S., Peng,J., Li,K., Wang,M. and Kuang,H.	Contrasting evolutionary patterns of the Rp1 resistance gene family in different species of poaceae	Mol. Biol. Evol.	28(1)	313-325	2011	PI37	Pi37(t), Pi37
32903	20182746	MacIntosh,G.C., Hillwig,M.S., Meyer,A. and Flagel,L.	RNase T2 genes from rice and the evolution of secretory ribonucleases in plants	Mol. Genet. Genomics	283(4)	381-396	2010	RNS1,RNS2,RNS3,RNS5,RNS6,RNS7,RNS8,RNS4	OsRNS1,OsRNS2,OsRNS3,OsRNS5,OsRNS6,OsRNS7,OsRNS8,OsRNS4, OsRRP, RNaseDIS
32904	21253568	Nonomura,K., Eiguchi,M., Nakano,M., Takashima,K., Komeda,N., Fukuchi,S., Miyazaki,S., Miyao,A., Hirochika,H. and Kurata,N.	A Novel RNA-Recognition-Motif Protein Is Required for Premeiotic G(1)/S-Phase Transition in Rice (Oryza sativa L.)	PLoS Genet.	7 (1)	E1001265	2011	MEL2	OsMEL2
32905	20195612	Ohta,H., Ogino,A., Kasai,M., Sano,Y. and Kanazawa,A.	Fertility restoration by Ifr1 in rice with BT-type cytoplasmic male sterility is associated with a reduced level, but not processing, of atp6-orf79 co-transcribed RNA	Plant Cell Rep.	29(4)	359-369	2010	IFR,_,RF1B,RF1,_	Ifr, Rf16, Ifr1,ORF79, orf79,RF1b, Rf-1B, PPR7,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,atp6, N-atp6, B-ATP6, B-atp6, atp6-1
32906	0	Park,J.-H., Chung,E.-S., Shin,S.-H., Jeon,E.-H., Kim,M.-J., Lee,H.-Y., Jeung,J.-U., Hyung,N.-I., Lee,J.-H. and Chung,Y.-S.	Enhanced fungal resistance in Arabidopsis expressing wild rice PR-3 (OgChitIVa) encoding chitinase class IV	Plant Biotechnol Rep	3(2)	147-155	2009	CHT5	Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3
32907	17303063	Peng,R.H., Xiong,A.S., Liu,J.G., Xu,F., Bin,C., Zhu,H. and Yao,Q.H.	Adenosine added on the primer 5' end improved TA cloning efficiency of polymerase chain reaction products	Anal. Biochem	363(1)	163-165	2007	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C
32909	0	Rawat,N., Sinha,D.K., Rajendrakumar,P., Shrivastava,P., Neeraja,C.N., Sundaram,R.M., Nair,S. and Bentur,J.S.	Role of pathogenesis-related genes in rice-gall midge interactions	Curr. Sci.	99(10)	1361-1368	2010	_,_,PR1A	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10,OsPR2, PR2, OsGlu1, Glu1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 
32910	17157544	Reddy,A.M., Reddy,V.S., Scheffler,B.E., Wienand,U. and Reddy,A.R.	Novel transgenic rice overexpressing anthocyanidin synthase accumulates a mixture of flavonoids leading to an increased antioxidant potential	Metab. Eng.	9(1)	95-111	2007	ANS	ANS, OsANS1, ANS1, LDOX
32911	0	Reddy,P.M.S. and Padayatty,J.D.	Effects of 5' flanking sequences and changes in the 5' internal control region on the transcription of rice tRNA Gly GCC gene	Plant Mol. Biol. 11 (5), 575-583  REMARK DOI: 10.1007/BF00017457			1988		
32912	0	Reimmann,C., Mauch,F., Dudler,R. and Hofmann,C.	Characteriztaion of a rice gene induced by Pseudomonas syringae pv. syringae: requirement for the bacterial lemA gene function	Physiol. Mol. Plant Pathol.	46(1)	71-81	1995	PIR7A,PIR7B	Pir7a,Pir7b
32913	20522726	Sanyal,A., Ammiraju,J.S., Lu,F., Yu,Y., Rambo,T., Currie,J., Kollura,K., Kim,H.R., Chen,J., Ma,J., San Miguel,P., Mingsheng,C., Wing,R.A. and Jackson,S.A.	Orthologous Comparisons of the Hd1 Region across Genera Reveal Hd1 Gene Lability within Diploid Oryza Species and Disruptions to Microsynteny in Sorghum	Mol. Biol. Evol.	27(11)	2487-2506	2010	_,_,_,_,_,_,_,_,_,CLF,SE1	Nhp2,OsbHLH086, TA1,kanadaptin,,AdIT,SEPK1,Lip,NAA, OsATL4 ,OsSERL2, SERL2, SERK1, OsBAK1-7, BAK1-7,OsSET24, SDG711, EZ1, OsCLF,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
32914	0	Shirasawa,K., Takeuchi,Y., Ebitani,T. and Suzuki,Y.	Identification of gene for rice (Oryza sativa) seed lipoxygenase-3 involved in the generation of stale flavor and development of SNP markers for the lipoxygenase-3 deficiency	Breeding Science	58	169-176	2008	LOX3	Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4
32915	20584132	Thurber,C.S., Reagon,M., Gross,B.L., Olsen,K.M., Jia,Y. and Caicedo,A.L.	Molecular evolution of shattering loci in U.S. weedy rice	Mol. Ecol.	19(16)	3271-3284	2010	qSH1,SH4	qSH1, qsh1, qSH-1,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
32916	20416079	Wang,E., Xun,X., Zhang,L., Zhang,H., Lin,L., Wang,Q., Li,Q., Ge,S., Lu,B.R., Wang,W. and He,Z.	Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication	BMC Evol. Biol.	10	108	2010	CIN1,GIF1	OSCIN1, OsCIN1,gif1, CIN2, OsCIN2, OsGIF1
32917	20429951	Wang,Y., Shen,D., Bo,S., Chen,H., Zheng,J., Zhu,Q.H., Cai,D., Helliwell,C. and Fan,L.	Sequence variation and selection of small RNAs in domesticated rice	BMC Evol. Biol.	10	119	2010	MIR166L,MIR166H,TAS3A1,MIR395A,MIR395B,TAS3A2,MIR164D,MIR164E,MIR440,MIR164C,MIR395I,MIR395J,MIR395K,MIR443,MIR1867,_,_,TAS3B2,_,_,TAS3B1,MIR164A,MIR396F,MIR399D,MIR399I,MIR399A,MIR1318,MIR166B,MIR166C,MIR166N,MIR1862D,MIR166A,MIR166D,MIR166F,MIR166I,MIR166E,MIR166M,MIR166K,MIR166G,MIR1432,MIR390	miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,TAS3a1,OsmiR395a, miR395a, osa-MIR395a,OsmiR395b, miR395b, osa-MIR395b,TAS3a2,miR164d, osa-miR164d,miR164e, osa-MIR164e,miR440, osa-MIR440,miR164c, osa-miR164c,OsmiR395i, miR395i, osa-MIR395i,OsmiR395j, miR395j, osa-MIR395j,OsmiR395k, miR395k, osa-MIR395k,miR443, osa-MIR443,miR1867, osa-miR1867, osa-MIR1867,,,TAS3b2,,,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a,miR164a, osa-miR164a,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399i, osa-MIR399i, miR399i,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,miR1318, osa-miR1318, osa-MIR1318,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR1862d, osa-miR1862d, osa-MIR1862d,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR166f, osa-miR166f,miR166i, osa-miR166iosa-miR166i-3p,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR166m, osa-miR166m,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
32919	0	Wu,C.-X., Su,S.-C. and Peng,Y.-L.	Molecular cloning and differential expression of an aldehyde dehydrogenase gene in rice leaves in response to infection by blast fungus	Biologia	62(5)	523-528	2007	ALDH7	OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6 
32920	20585576	Xu,Y., Deng,M., Peng,J., Hu,Z., Bao,L., Wang,J. and Zheng,Z.L.	OsPIE1, the rice ortholog of Arabidopsis PHOTOPERIOD-INDEPENDENT EARLY FLOWERING1, is essential for embryo development	PLoS One	5 (6)	E11299	2010		
32921	0	Yoon,U.H. and Kim,Y.H.	Structural analysis of expressed sequence tags in immature seed of Oryza sativa L.	Journal of Plant Biotechnology (Korean)	36	130-136	2009		
32922	20852017	Yuan,M., Chu,Z., Li,X., Xu,C. and Wang,S.	The Bacterial Pathogen Xanthomonas oryzae Overcomes Rice Defenses by Regulating Host Copper Redistribution	Plant Cell	22(9)	3164-3176	2010	COPT6,COPT7,ZIP4,COPT5,COPT4,XA13,HMA9,COPT2,IRT1,COPT3,COPT1	COPT6, OsCOPT6,OsCOPT7,OsZIP4,COPT5, OsCOPT5,COPT4, OsCOPT4,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsHMA9 ,oshma9-1, oshma9-2, HMA9,COPT2, OsCOPT2,OsIRT1,COPT3, OsCOPT3,COPT1, OsCOPT1
32923	20653085	Zheng,X.M. and Ge,S.	Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara)	Mol. Ecol.	19(12)	2439-2454	2010	KS1,SSIIC,HD3A,WX1,LHS1	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsSSIIc, SSII-1, SSII1 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
32925		N. Tanaka, J-I. Itoh and Y. Nagato	Rice PETER PAN SYNDROME gene regulates juvenile-adult phase transition.	RGN	24	16-17	2008	PPS	OsWD40-55, OsCOP1, COP1
32926		Pupilli-F, Labombarda-P, Caceres-M-E, Quarin-C-L, Arcioni-S	The chromosome segment related to apomixis in Paspalum simplex is homoeologous to the telomeric region of the long arm of rice chromosome 12	Molecular Breeding	8	53-61	2001	APO	apo
32927		Zhou J, Xu Y, Xu P, Deng X, Hu F, Li J, Ren G, Tao D	Introgression and mapping of erect panicle gene from Oryza glaberrma in to Oryza Sativa.	RGN	24	18-21	2008	EP2(t)	Ep2(t)
32928	16514016	Briggs GC, Mouchel CF, Hardtke CS.	Characterization of the plant-specific BREVIS RADIX gene family reveals limited genetic redundancy despite high sequence conservation.	Plant Physiol.	140(4)	1306-16.	2006	BRXL5.P,BRXL4,BRXL3,BRXL2,BRXL1	OsBRXL5.P, OsBRXL5,OsBRXL4,OsBRXL3,OsBRXL2,OsBRXL1
32929		K. TAMURA1, Y. FUKUTA2, M. HIRAE3, S. OYA4, I. ASHIKAWA3 and T. YAGI3	RFLP mapping of a new resistance gene for green rice leafhopper in Kanto PL10	RGN	21	62-63	2004	GRH6	Grh6
32930		D. FUJITA, K. DOI, A. YOSHIMURA and H. YASUI	Introgression of a resistance gene for green rice leafhopper from Oryza nivara into cultivated rice, Oryza sativa L.	RGN	21	64-65	2004	GRH6	Grh6
32931	16673940	Reyna NS, Yang Y.	Molecular analysis of the rice MAP kinase gene family in relation to Magnaporthe grisea infection.	Mol. Plant Microbe Interact.	19(5)	530-40.	2006		
32932		Tasaki, M., Y. Tanaka, Y. Ie,ira. T. Kumamaru, Y. nakamura, K. Ohtsubo and H. Satoh.	Mapping of flo3 gene in rice seed.	Breeding Research	vol.6(Suppl.2)	266	2004	FLO3	flo3
32933		Kei Matsushita, Nobuko Yasuda, Thinlay, Shinzo Koizumi, Taketo Ashizawa, Yoshihiro Sunohara, Shuichi Iida, Osamu Ideta, Hideo Maeda and Yoshikatsu Fujita	A novel blast resistance locus in a rice (Oryza sativa L.) cultivar, Chumroo, of Bhutan	Euphytica	180	273-280	2011	PI46	Pi46(t)
32934	17334827	Okuzaki A, Shimizu T, Kaku K, Kawai K, Toriyama K.	A novel mutated acetolactate synthase gene conferring specific resistance to pyrimidinyl carboxy herbicides in rice.	Plant Mol. Biol.	64(1-2)	219-24	2007	ALS	OsALS, AHAS
32935		MIAO Li-li , WANG Chun-lian, ZHENG Chong-ke, CHE Jin-ying, GAO Ying, WEN Yi-chang, LI Gui-quan, ZHAO Kai-jun	Molecular Mapping of a New Gene for Resistance to Rice Bacterial Blight.	Sci. Agric. Sin. 	43(15)	3051-3058	2010	XA36,XA34	,xa34(t)
32936		GUO Si-bin1, ZHANG Duan-pin, LIN Xing-hua	Identification and Mapping of a Novel Bacterial Blight Resistance Gene Xa35(t)@Originated from Oryza minuta.	Sci. Agric. Sin. 	43(13)	2611-2618	2010	XA35	
32937		Ginny Antony	Molecular Basis of avrXa7 Mediated virulence in bacterical blight of rice	Dissertation, Kansan State University			2010	XA37	
32938	16473545	Kazan K.	Negative regulation of defence and stress genes by EAR-motif-containing repressors.	Trends Plant Sci.	11(3)	109-12.	2006	ERF3	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
32939	21119645	Ookawa T, Hobo T, Yano M, Murata K, Ando T, Miura H, Asano K, Ochiai Y, Ikeda M, Nishitani R, Ebitani T, Ozaki H, Angeles ER, Hirasawa T, Matsuoka M	New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield.	Nat Commun.	1	132.	2010	SCM1,APO1	,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393
32940	20163552	Zhao FJ, Ago Y, Mitani N, Li RY, Su YH, Yamaji N, McGrath SP, Ma JF.	The role of the rice aquaporin Lsi1 in arsenite efflux from roots.	New Phytol.	186(2)	392-9.	2010	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
32941	15111712	Shuichi Yanagisawa	Dof Domain Proteins: Plant-Specific Transcription Factors Associated with Diverse Phenomena Unique to Plants	Plant Cell Physiol.	45(4)	386-391	2004	RPBF	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF
32942	12475498	Shuichi Yanagisawa	The Dof family of plant transcription factors	Trends Plant Sci.	7(12)	555-560	2002	RPBF,DOF1,DOF5,DOF4,RDD1	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsDof1,OsDof5,OsDof4, OsDof8, Dof8, OsDof-8, DOF8,OsDof2, OsDof9, Dof9, OsDof-9 
32943	15316287	Tian C, Wan P, Sun S, Li J, Chen M.	Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.	Plant Mol. Biol.	54	519-532	2004	GRAS10,DLT,GRAS5,SHR2,GRAS42,GRAS39,GRAS31,GRAS29,GRAS47,GRAS27,HAM3,GRAS26,GRAS49,SLRL2,GRAS53,GRAS25,GRAS3,GRAS45,NSP1,GRAS44,CIGR2,GRAS55,SCR,GRAS4,GRAS35,GRAS7,HAM2,GRAS48,GRAS19,SLRL1,GRAS17,GRAS2,GRAS6,GRAS40,GRAS52,SLR1,SHR1,GRAS22,GRAS56,HAM1,GRAS28,GRAS23,CIGR1,GRAS46,GRAS11,GRAS24,GRAS54,GRAS16,GRAS20,MOC1,SCR1,GRAS57,NSP2,GRAS50,GRAS37,GRAS43,GRAS12	OsGRAS-10, OsGRAS10, GRAS-10,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsGRAS-5, OsGRAS5, GRAS-5,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,OsGRAS-42, OsGRAS42, GRAS-42,OsGRAS-39, OsGRAS39, GRAS-39,OsGRAS-31, OsGRAS31, GRAS-31,OsGRAS-29, OsGRAS29, GRAS-29,OsGRAS-47, OsGRAS47, GRAS-47,OsGRAS-27, OsGRAS27, GRAS-27,OsHAM3, OsGRAS-21, OsGRAS21, GRAS-21, GRAS21,OsGRAS-26, OsGRAS26, GRAS-26,OsGRAS-49, OsGRAS49, GRAS-49,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsGRAS-53, OsGRAS53, GRAS-53,OsGRAS-25, OsGRAS25, GRAS-25,SCL1, OsSCL1, OsGRAS-3, OsGRAS3, GRAS-3,OsGRAS-45, OsGRAS45, GRAS-45,Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14,OsGRAS-44, OsGRAS44, GRAS-44,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36,OsGRAS-55, OsGRAS55, GRAS-55,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsGRAS-4, OsGRAS4, GRAS-4,OsGRAS-35, OsGRAS35, GRAS-35,OsGRAS-7, OsGRAS7, GRAS-7,OsHAM2, OsGRAS-8, OsGRAS8, GRAS-8, GRAS8,OsGRAS-48, OsGRAS48, GRAS-48,OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17,OsGRAS-2, OsGRAS2, GRAS-2,OsGRAS-6, OsGRAS6, GRAS-6,OsGRAS-40, OsGRAS40, GRAS-40,OsGRAS-52, OsGRAS52, GRAS-52,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38,OsGRAS-22, OsGRAS22, GRAS-22,OsGRAS-56, OsGRAS56, GRAS-56,OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9,OsGRAS-28, OsGRAS28, GRAS-28,OsGRAS23, OsGRAS-23, GRAS-23,OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsGRAS44, OsGRAS-44, GRAS-44, GRAS44, OsGRAS-46, OsGRAS46, GRAS-46,OsGRAS-11, OsGRAS11, GRAS-11,OsGRAS-24, OsGRAS24, GRAS-24,OsGRAS-54, OsGRAS54, GRAS-54,AM18, OsAM1, OsGRAS-16, OsGRAS16, GRAS-16,OsGRAS-20, OsGRAS20, GRAS-20,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsGRAS-57, OsGRAS57, GRAS-57,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13,OsGRAS-50, OsGRAS50, GRAS-50,OsGRAS-37, OsGRAS37, GRAS-37,OsGRAS-43, OsGRAS43, GRAS-43,OsGRAS-12, OsGRAS12, GRAS-12
32944	17655651	Arite T, Iwata H, Ohshima K, Maekawa M, Nakajima M, Kojima M, Sakakibara H, Kyozuka J.	DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice.	Plant J.	51(6)	1019-1029	2007	_,D17,D10,D14,D3,FC1	OsCCD8a, OsCCD8c, CCD8a, CCD8c,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
32945	19825016	Qiao Y, Jiang W, Lee J, Park B, Choi MS, Piao R, Woo MO, Roh JH, Han L, Paek NC, Seo HS, Koh HJ.	SPL28 encodes a clathrin-associated adaptor protein complex 1, medium subunit micro 1 (AP1M1) and is responsible for spotted leaf and early senescence in rice (Oryza sativa).	New Phytol.	185(1)	258-74.	2010	SPL28	
32946	16809061	Platten JD, Cotsaftis O, Berthomieu P, Bohnert H, Davenport RJ, Fairbairn DJ, Horie T, Leigh RA, Lin HX, Luan S, Maser P, Pantoja O, Rodriguez-Navarro A, Schachtman DP, Schroeder JI, Sentenac H, Uozumi N, Very AA, Zhu JK, Dennis ES, Tester M.	Nomenclature for HKT transporters, key determinants of plant salinity tolerance.	Trends Plant Sci.	11(8)	372-4.	2006	HKT8,HKT4,HKT3,HKT5,HKT9,HKT6,HKT1,HKT2,HKT7	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsHKT3, OsHKT2;3,OsHKT5, OsHKT1;2,OsHKT9, OsHKT2;4,OsHKT6, OsHKT1;3, HKT1;3,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsHKT2, OsHKT2;2,OsHKT7, OsHKT1;4, HKT1;4
32949	21637817	An,X.J., Deng,Z.Y. and Wang,T.	OsSpo11-4, a Rice Homologue of the Archaeal TopVIA Protein, Mediates Double-Strand DNA Cleavage and Interacts with OsTopVIB	PLoS One	6 (5)	e20327	2011	TOP6A2,TOP6A3,TOP6B,SPO11-4,SPO11-5,TOP6A1	OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B,OsTOP6A3, OsSPO11-3, OsSPO11C,OsTOP6B, OsSPO11-6B,OsSPO11-4, OsSPO11D,OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1
32950	21646530	Asano,K., Yamasaki,M., Takuno,S., Miura,K., Katagiri,S., Ito,T., Doi,K., Wu,J., Ebana,K., Matsumoto,T., Innan,H., Kitano,H., Ashikari,M. and Matsuoka,M.	Artificial selection for a green revolution gene during japonica rice domestication	Proc. Natl. Acad. Sci. U.S.A.	108(27)	11034-9	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
32951	21602323	Chin,J.H., Gamuyao,R., Dalid,C., Bustamam,M., Prasetiyono,J., Moeljopawiro,S., Wissuwa,M. and Heuer,S.	Developing rice with high yield under phosphorus deficiency:Pup1 sequence to application	Plant Physiol.	156i3j	1202-16	2011		
32952	20924028	Cotsaftis,O., Plett,D., Johnson,A.A., Walia,H., Wilson,C., Ismail,A.M., Close,T.J., Tester,M. and Baumann,U.	Root-specific transcript profiling of contrasting rice genotypes in response to salinity stress	Mol Plant	4(1)	25-41	2011	HKT1,HKT8,HKT2,TIP2;1	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT2, OsHKT2;2,OsTIP2;1, TIP2-1, TIP2
32953	16617180	Gross,J., Cho,W.K., Lezhneva,L., Falk,J., Krupinska,K., Shinozaki,K., Seki,M., Herrmann,R.G. and Meurer,J.	A plant locus essential for phylloquinone (vitamin K1) biosynthesis originated from a fusion of four eubacterial genes	J. Biol. Chem.	281(25)	17189-17196	2006	_	PHYLLO
32954	0	Huang,J., Cao,Y., Zhang,H. and Yang,J.	Molecular cloning and sequence analysis of a novel C2H2 zinc finger cDNA from rice	J. Nanjing Agri. Univ.iNanjing Nongye Daxue Xuebaoj	25(2)	110-112	2002	ZFP179	OsZFP179
32955	21515697	Li,H., Yuan,Z., Vizcay-Barrena,G., Yang,C., Liang,W., Zong,J., Wilson,Z.A. and Zhang,D.	PERSISTENT TAPETAL CELL1 Encodes a PHD-Finger Protein That Is Required for Tapetal Cell Death and Pollen Development in Rice	Plant Physiol.	156(2)	615-630	2011	PTC1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1
32956	21221134	Li,W., Zhong,S., Li,G., Li,Q., Mao,B., Deng,Y., Zhang,H., Zeng,L., Song,F. and He,Z.	Rice RING protein OsBBI1 with E3 ligase activity confers broad-spectrum resistance against Magnaporthe oryzae by modifying the cell wall defence	Cell Res.			2011	_	OsBBI1
32957	21400109	Li,Z.M., Zheng,X.M. and Ge,S.	Genetic diversity and domestication history of African rice (Oryza glaberrima) as inferred from multiple gene sequences	Theor. Appl. Genet.	123(1)	21-31	2011	WX1,_,_,CPD1,KS1,_,SSIIC,_,GBSSII,LHS1,ADH1,D1,_	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,NP39,NP122,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,OsSSIIc, SSII-1, SSII1 ,NP1977, OsVDAC8, VDAC8, Os1977,GBSS2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,Adh1, Adh1/2, adh1/adh2, OsADH1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,Os0053, OsGL1-6
32958	20194759	Masumoto,C., Miyazawa,S., Ohkawa,H., Fukuda,T., Taniguchi,Y., Murayama,S., Kusano,M., Saito,K., Fukayama,H. and Miyao,M.	Phosphoenolpyruvate carboxylase intrinsically located in the chloroplast of rice plays a crucial role in ammonium assimilation	Proc. Natl. Acad. Sci. U.S.A.	107(11)	5226-5231	2010	_,_,_,_,_,_	Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,PEPC-1, Osppc1, ppc1,PEPC-2, Osppc4, ppc4,Osppc, OSPPC, Osppc2a, ppc2a,Osppc2b, ppc2b,Osppc3, Osppc2, ppc3,ppc2
32960	20840506	Miyadate,H., Adachi,S., Hiraizumi,A., Tezuka,K., Nakazawa,N., Kawamoto,T., Katou,K., Kodama,I., Sakurai,K., Takahashi,H., Satoh-Nagasawa,N., Watanabe,A., Fujimura,T. and Akagi,H.	OsHMA3, a P1B-type of ATPase affects root-to-shoot cadmium translocation in rice by mediating efflux into vacuoles	New Phytol.	189(1)	190-199	2011	GCC7,ZIP8	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3,OsZIP8, OsZIP1
32961	21388416	Nocito,F.F., Lancilli,C., Dendena,B., Lucchini,G. and Sacchi,G.A.	Cadmium retention in rice roots is influenced by cadmium availability, chelation and translocation	Plant Cell Environ.	34(6)	994-1008	2011	HMA2,PCS1,GCC7,_	OsHMA2, osHMA2, OsHMA2v ,OsPCS1, OsPCS2, PCS2 ,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full
32962	20796245	Nock,C.J., Waters,D.L., Edwards,M.A., Bowen,S.G., Rice,N., Cordeiro,G.M. and Henry,R.J.	Chloroplast genome sequences from total DNA for plant identification	Plant Biotechnol J.	9(3)	328-333	2011	_,RPS7,PSAC,RPS14,CLPP,NDHB,RPL33,RPS19,PSBD,RPS11,NDHE,RPS4,RPL23,PSBI,PETA,_,PSBN,PSBH,RPL16,_,PETD,RPS18,RPOC1,_,NDHK,NDHI,NDHC,RPL22,NDHH,NDHG,PSBF,RPL36,PSBE,_,RPS8,INFA,_,_,NDHF,RPS7,_,_,_,PSBM,YCF4,PSBL,_,NDHJ,RPS3,RPL23,_,RPS2,RPL32,PSBK,_,RPS15,RPS15,RPOA,PSAA,_,PSAB,NDHA,RPL2,RPOB,PSBC,NDHD,RBCL,PSBA,RPS19,16S  rRNA,4.5S  rRNA,5S  rRNA,5S  rRNA,4.5S  rRNA	psbN,rps7,psaC,rps14 ,ORF216, ClpP, clpP,ndhB,rpl33,rps19,psbD, D2, OsPsbD1, OsPsbD2,rps11,ndhE,rps4 ,rpl23,psbI,petA, Cytf, cytF, Cyt f,ORF321, ccsA,psbN,psbH, psbF ,rpl16,matK, ORF542 ,petD,rps18,rpoC1, RPO beta', RPObeta',atpF,psbG, ndhK,ORF178, ndhI,ndhC,rpl22,ORF393, ndhH,ndhG,psbF,rpl36,psbE,rpl2,rps8,infA,rpoC2,atpI,ndhF,rps7,atpE,atpH,ORF56, ndhH,psbM,Ycf4, ORF185,psbL,ORF106, accD,ORF159, ndhJ,rps3,rpl23,ORF230, cemA,rps2,rpl32, ORF63,psbK,psbB,rps15,rps15,rope, rpoalpha, Rpoalpha, rope, RpoA ,PsaA, psaA, PsAA1,atpA,PsaB, psaB, PsAA2,ndhA,rpl2,rpoB, RpoB, Rpobeta,psbC, cp43 ,ndhD, NdhD, NDH4, NADH4,rbcL, rbcA, OsrbcL,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,rps19,rrn16,rrn4.5,rrn5,rrn5,rrn4.5
32964	16887895	Ogo,Y., Itai,R.N., Nakanishi,H., Inoue,H., Kobayashi,T., Suzuki,M., Takahashi,M., Mori,S. and Nishizawa,N.K.	Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants	J. Exp. Bot.	57(11)	2867-2878	2006	_,IRT1,NAS3,NAS1,FDH,_	OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsIRT1,OsNAS3,OsNAS1,OsFDH, FDH 1,OsAPT1, APRT, APT1
32966	21494675	Sun,M.M., Abdula,S.E., Lee,H.J., Cho,Y.C., Han,L.Z., Koh,H.J. and Cho,Y.G.	Molecular aspect of good eating quality formation in japonica rice	PLoS One	6 (4)	e18385	2011	WX1,ALK,SBE3,SSI,SBE1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsSSI, SSS 1, SSS1, SS1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
32969	12897262	Vitha,S., Froehlich,J.E., Koksharova,O., Pyke,K.A., van Erp,H. and Osteryoung,K.W.	ARC6 is a J-domain plastid division protein and an evolutionary descendant of the cyanobacterial cell division protein Ftn2	Plant Cell	15(8)	1918-1933	2003	_	ARC6
32970	20465413	Wu,T., Guo,A., Zhao,Y., Wang,X., Wang,Y., Zhao,D., Li,X., Ren,H. and Dong,H.	Ectopic expression of the rice lumazine synthase gene contributes to defense responses in transgenic tobacco	Phytopathology	100(6)	573-581	2010	_	OsLS
32971	18987217	Yilmaz,A., Nishiyama,M.Y. Jr., Fuentes,B.G., Souza,G.M., Janies,D., Gray,J. and Grotewold,E.	GRASSIUS: a platform for comparative regulatory genomics across the grasses	Plant Physiol.	149(1)	171-180	2009	DOF6,_,_,_,WRKY26,_,WRKY36,_,_,_,_,_,_,_,_,LIP19,BZIP63,ERF33,SPL4,DRAP1,AP2/EREBP109,C3H32,_,_,_,_,ERF50,_,_,BZIP42,_,_,_,_,SAP16,_,_,_,DOS,_,WRKY67,PLT2,WRKY19,_,DPF,WRKY69,WRKY121,_,BSRD1,_,_,_,_,TIFY6A,_,_,_,_,_,_,_,_,ZFP15,WRKY87,WRKY47,WRKY51,_,HSFB1,WRKY72,EIL2,EHD3,WRKY10,WRKY11	OsDof6, Dof6, OsDof-6,,R2R3-MYB,R2R3-MYB,OsWRKY26, OsWRKY59,R2R3-MYB,OsWRKY36,,,ZFP182,,,,,,Lip19, lip19, OsbZIP38,OsbZIP63,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,OsSPL4,OsDrAp1, DrAp1,AP2/EREBP#109,OsC3H32,OsbHLH083,OsbHLH085,OsbHLH090,OsbHLH086, TA1,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6,OsbHLH066,Orysa;E2F1, OsE2F1, E2F1,OsbZIP42, OsABF7, ABF7, HBF1,OsbHLH044, bHLH044, OsbHLH96, bHLH96, bHLH096,OsbHLH020, bHLH020, bHLH20,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L,OsbHLH091, bHLH091,OsSAP16,OsbHLH031,OsbHLH064,OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsBBX4, OsSTH, BBX4, STH,OsWRKY67,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,OsWRKY19,OsRAI1, RAI1, OsbHLH003, bHLH003, bHLH3,OsbHLH025, bHLH025, bHLH25,OsWRKY69,OsWRKY121,OsbHLH047, bHLH047,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, bsr-d1 ,OsbHLH109, bHLH109,OsbHLH148, bHLH148,OsBBX6, BBX6,OsBBX13, BBX13,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,Edf ,OsbHLH125, bHLH125, OsRSL1, RSL1 ,OsbHLH059, bHLH059, OsbHLH59, bHLH59 ,OsbHLH1, OsbHLH062 ,OsbHLH089, bHLH089, bHLH89,WZF1,OsbHLH098,OsARID1, ARID1,ZFP 15,OsWRKY87, OsSUSIBA2-like,OsWRKY47,OsWRKY51,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1 ,OsWRKY72, WRKY-72,OsEIL2,Ehd3,OsWRKY10,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2
32972	21510855	Yuan,M., Li,X., Xiao,J. and Wang,S.	Molecular and functional analyses of COPT/Ctr-type copper transporter-like gene family in rice	BMC Plant Biol	11(1)	69	2011	COPT1,COPT4,COPT2,COPT3,COPT6,COPT5,COPT7	COPT1, OsCOPT1,COPT4, OsCOPT4,COPT2, OsCOPT2,COPT3, OsCOPT3,COPT6, OsCOPT6,COPT5, OsCOPT5,OsCOPT7
32973	21118257	Zhai,C., Lin,F., Dong,Z., He,X., Yuan,B., Zeng,X., Wang,L. and Pan,Q.	The isolation and characterization of Pik, a rice blast resistance gene which emerged after rice domestication	New Phytol.	189(1)	321-334	2011	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
32974	21556707	Li H. , Chen Z. , Hu M. , Wang Z. , Hua H. , Yin C. , Zeng H.	Different effects of night versus day high temperature on rice quality and accumulation profiling of rice grain proteins during grain filling.	Plant Cell Rep.	30(9)	1641-59	2011		
32975	21396108	Potnis N. , Krasileva K. , Chow V. , Almeida N.F. , Patil P.B. , Ryan R.P. , Sharlach M. , Behlau F. , Dow J.M. , Momol M. , White F.F. , Preston J.F. , Vinatzer B.A. , Koebnik R. , Setubal J.C. , Norman D.J. , Staskawicz B.J. , Jones J.B.	Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.	BMC Genomics	12	146	2011		
32976	21708230	Li K. , Xu C. , Zhang J.	Proteome profile of maize (Zea Mays L.) leaf tissue at the flowering stage after long-term adjustment to rice black-streaked dwarf virus infection.	Gene	485(2)	106-13	2011		
32977	21655270	Angel R. , Matthies D. , Conrad R.	Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen.	PLoS One	6(5)	e20453	2011		
32978	21683881	Okamura M. , Aoki N. , Hirose T. , Yonekura M. , Ohto C. , Ohsugi R.	Tissue specificity and diurnal change in gene expression of the sucrose phosphate synthase gene family in rice.	Plant Sci.	181(2)	159-66	2011		
32979	21335436	Kajala K. , Covshoff S. , Karki S. , Woodfield H. , Tolley B.J. , Dionora M.J. , Mogul R.T. , Mabilangan A.E. , Danila F.R. , Hibberd J.M. , Quick W.P.	Strategies for engineering a two-celled C4 photosynthetic pathway into rice.	J. Exp. Bot.	62(9)	3001-10	2011		
32980	21127026	Ueno D. , Koyama E. , Yamaji N. , Ma J.F.	Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan.	J. Exp. Bot.	62(7)	2265-72	2011	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3
32981	21153026	Hu T. , He S. , Yang G. , Zeng H. , Wang G. , Chen Z. , Huang X.	Isolation and characterization of a rice glutathione S-transferase gene promoter regulated by herbicides and hormones.	Plant Cell Rep.	30(4)	539-49	2011	GSTL2,GSTL1,GSTU4,RPP31,GSTU3	OsGSTL2,OsGSTL1,OsGSTU4,OsRPP31, OsGSTF6, GSTF6,OsGSTU3, OsGSTU29, GSTU29
32982	21539752	Lackner G. , Moebius N. , Partida-Martinez LP. , Boland S. , Hertweck C.	Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome.	BMC Genomics	12	210	2011		
32983	21478444	Rautengarten C. , Ebert B. , Herter T. , Petzold C.J. , Ishii T. , Mukhopadhyay A. , Usadel B. , Scheller H.V.	The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis.	Plant Cell	23(4)	1373-90	2011		
32984	21538101	Ganguly M. , Roychoudhury A. , Sarkar S.N. , Sengupta D.N. , Datta S.K. , Datta K.	Inducibility of three salinity/abscisic acid-regulated promoters in transgenic rice with gusA reporter gene.	Plant Cell Rep.	30(9)	1617-25	2011		
32985	21495624	Sturms R. , DiSpirito A.A. , Hargrove M.S.	Plant and cyanobacterial hemoglobins reduce nitrite to nitric oxide under anoxic conditions.	Biochemistry	50(19)	3873- 8	2011		
32986	21063744	Kurusu T. , Hamada H. , Sugiyama Y. , Yagala T. , Kadota Y. , Furuichi T. , Hayashi T. , Umemura K. , Komatsu S. , Miyao A. , Hirochika H. , Kuchitsu K.	Negative feedback regulation of microbe-associated molecular pattern-induced cytosolic Ca2+ transients by protein phosphorylation.	J. Plant Res.	124(3)	415-24	2011		
32987	21414773	Zeng G. , Yu Z. , Chen Y. , Zhang J. , Li H. , Yu M. , Zhao M.	Response of compost maturity and microbial community composition to pentachlorophenol (PCP)-contaminated soil during composting.	Bioresource technology	102(10)	5905-11	2011		
32988	21625436	Yang Q. , He H. , Li H. , Tian H. , Zhang J. , Zhai L. , Chen J. , Wu H. , Yi G. , He Z.H. , Peng X.	NOA1 Functions in a Temperature-Dependent Manner to Regulate Chlorophyll Biosynthesis and Rubisco Formation in Rice.	PLoS One	6(5)	e20015	2011	_,_,_,_,RBCL,FGL	OsPuf4,OsRALyase, OsFbox090, OsFbox90, Os_F0337,NOA1, OsNOA1,OsPorA, PORA, OsPORA,rbcL, rbcA, OsrbcL,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB
32989	21585388	Wathugala D.L. , Richards S.A. , Knight H. , Knight M.R.	OsSFR6 is a functional rice orthologue of SENSITIVE TO FREEZING-6 and can act as a regulator of COR gene expression, osmotic stress and freezing tolerance in Arabidopsis.	New Phytol.	191(4)	984-95	2011		
32990	21516334	Lu S. , Friesen T.L. , Faris J.D.	Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.).	Mol. Genet. Genomics	285(6)	485-503	2011		
32991	21332845	Seo J.S. , Joo J. , Kim M.J. , Kim Y.K. , Nahm B.H. , Song S.I. , Cheong J.J. , Lee J.S. , Kim J.K. , Choi Y.D.	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.	Plant J.	65(6)	907-21	2011	_,DREB1G,TIFY10B,TIFY11C,EG2,TIFY11D,_,TIFY6A,TIFY6B,TIFY10A,TIFY9,TIFY11A,ERF91,ERF101,DREB1B,DREB1A,_,DREB1E,TIFY8,DREB1C,TIFY11B,TIFY10C,_	OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsbHLH148, bHLH148,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ8, OsJAZ 4, OsJAZ4, OsTIFY6b,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9 ,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbHLH1,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsJAZ12, OsTIFY8, OsSTA75,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,UspA, OsUspA
32992	21249367	Li W. , Zhou F. , Liu B. , Feng D. , He Y. , Qi K. , Wang H. , Wang J.	Comparative characterization, expression pattern and function analysis of the 12-oxo-phytodienoic acid reductase gene family in rice.	Plant Cell Rep.	30(6)	981-95	2011	OPR11,OPR12,OPR13,OPR1,OPR3,OPR2,OPR8,OPR9,OPR6,OPR4,OPR10,OPR5	OsOPR11, OsOPR04-1,OsOPR12, OsOPR04-2,OsOPR13, OsOPR04-3,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsOPR3, OsOPR06-4,OsOPR2, OsOPR06-5,OsOPR8, OsOPR7, OsOPR02-1,OsOPR9, OsOPR01-2,OsOPR6, OsOPR4, OsOPR06-1,OsOPR4, OsOPR10, OsOPR06-3,OsOPR10, OsOPR12, OsOPR01-1,OsOPR5, OsOPR6, OsOPR06-2
32993	20955180	Dubouzet J.G. , Maeda S. , Sugano S. , Ohtake M. , Hayashi N. , Ichikawa T. , Kondou Y. , Kuroda H. , Horii Y. , Matsui M. , Oda K. , Hirochika H. , Takatsuji H. , Mori M.	Screening for resistance against Pseudomonas syringae in rice-FOX Arabidopsis lines identified a putative receptor-like cytoplasmic kinase gene that confers resistance to major bacterial and fungal pathogens in Arabidopsis and rice.	Plant Biotechnol J.	9(4)	466-85	2011	BSR1	OsRLCK278, RLCK278
32994	21390234	Yu H. , Xie W. , Wang J. , Xing Y. , Xu C. , Li X. , Xiao J. , Zhang Q.	Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers.	PLoS One	6(3)	e17595	2011		
32995	21444646	Li H. , Liang W. , Yin C. , Zhu L. , Zhang D.	Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.	Plant Physiol.	156(1)	263-74	2011	MADS13,DL	OsMADS13, MAF1, RMADS206,DL, dl(lop), lop, dl, dl1
32996	21679437	Mallikarjuna Swamy BP. , Vikram P. , Dixit S. , Ahmed H.U. , Kumar A.	Meta-analysis of grain yield QTL identified during agricultural drought in grasses showed consensus.	BMC Genomics	12	319	2011		
32997	21571948	Izawa T. , Mihara M. , Suzuki Y. , Gupta M. , Itoh H. , Nagano A.J. , Motoyama R. , Sawada Y. , Yano M. , Hirai M.Y. , Makino A. , Nagamura Y.	Os-GIGANTEA Confers Robust Diurnal Rhythms on the Global Transcriptome of Rice in the Field.	Plant Cell	23(5)	1741-55	2011	PRR73,SE5,HD3A,PRR59,TOC1,GI,LHY,SE1,PRR95,HD2	OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsGI, Gi, Os-GI,LHY, Os-LHY, OsLHY,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
32998	21443693	Du H. , Ouyang Y. , Zhang C. , Zhang Q.	Complex evolution of S5, a major reproductive barrier regulator, in the cultivated rice Oryza sativa and its wild relatives.	New Phytol.	191(1)	275-87	2011	S5	S5-3, S5-4
32999	21687735	Ku L. , Wei X. , Zhang S. , Zhang J. , Guo S. , Chen Y.	Cloning and Characterization of a Putative TAC1 Ortholog Associated with Leaf Angle in Maize (Zea mays L.).	PLoS One	6(6)	e20621	2011	SPK	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 
33000	21715673	Wu Z. , Ren H. , McGrath S.P. , Wu P. , Zhao F.J.	Investigating the Contribution of the Phosphate Transport Pathway to Arsenic Accumulation in Rice.	Plant Physiol.	157(1)	498-508	2011	PHF1,PHR2,PT8	OsPHF1, OsWD40-137, OsSEC12,OsPHR2, Os-PHR2,OsPT8, PHT1-8, OsPht1;8, Pht1;8
33001	21497711	Huang J. , Che S. , Jin L. , Qin F. , Wang G. , Ma N.	The physiological mechanism of a drooping leaf2 mutation in rice.	Plant Sci.	180(6)	757-65	2011		
33002	21683590	Huang Y.C. , Chen Y.F. , Chen C.Y. , Chen W.L. , Ciou Y.P. , Liu W.H. , Yang C.H.	Production of ferulic acid from lignocellulolytic agricultural biomass by Thermobifida fusca thermostable esterase produced in Yarrowia lipolytica transformant.	Bioresource technology	102(17)	8117-22	2011		
33003	21459770	Zhu G. , Ye N. , Yang J. , Peng X. , Zhang J.	Regulation of expression of starch synthesis genes by ethylene and ABA in relation to the development of rice inferior and superior spikelets.	J. Exp. Bot.	62(11)	3907-16	2011		
33004	21625508	Li G. , Zhou X. , Kong L. , Wang Y. , Zhang H. , Zhu H. , Mitchell T.K. , Dean R.A. , Xu J.R.	MoSfl1 Is Important for Virulence and Heat Tolerance in Magnaporthe oryzae.	PLoS One	6(5)	e19951	2011		
33005	21710178	Fujino K. , Sekiguchi H.	Transposition behavior of nonautonomous a hAT superfamily transposon nDart in rice (Oryza sativa L.).	Mol. Genet. Genomics	286(2)	135-42	2011		
33006	21128943	Meng W. , Su Y.C. , Saunders R.M. , Chye M.L.	The rice acyl-CoA-binding protein gene family: phylogeny, expression and functional analysis.	New Phytol.	189(4)	1170-84	2011	_,_,_,_,_,_	OsACBP2, ACBP2,OsACBP1, ACBP1,OsACBP3, ACBP3,OsACBP6, ACBP6,OsACBP5, ACBP5,OsACBP4, ACBP4
33008	20955181	Luan W. , Liu Y. , Zhang F. , Song Y. , Wang Z. , Peng Y. , Sun Z.	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth.	Plant Biotechnol J.	9(4)	513-24	2011	CSLD1,ND1	csld1, OsCSLD1, OsCslD1,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1
33009	21624033	Kurai T. , Wakayama M. , Abiko T. , Yanagisawa S. , Aoki N. , Ohsugi R.	Introduction of the ZmDof1 gene into rice enhances carbon and nitrogen assimilation under low-nitrogen conditions.	Plant Biotechnol J.	9(8)	826-37	2011		
33010	21698458	Li H.W. , Zang B.S. , Deng X.W. , Wang X.P.	Overexpression of the trehalose-6-phosphate synthase gene OsTPS1 enhances abiotic stress tolerance in rice.	Planta.	234(5)	1007-1018	2011	WSI18,HSP70,CRP,TPP2,TPP1,TPS1,RAB16C,TRE1,ELIP,LEA14,DHN6	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,OsHSP70, OsEnS-45, EnS-45,,OsTPP2,OsTPP1, OsTPS,OsTPS1,rab21, OsLEA27, rab16C,OsTRE, OsTRE1,,Lea14A, OsLEA5, OsEnS-2,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21
33011	21082325	Zhao Z.G. , Zhu S.S. , Zhang Y.H. , Bian X.F. , Wang Y. , Jiang L. , Liu X. , Chen L.M. , Liu S.J. , Zhang W.W. , Ikehashi H. , Wan J.M.	Molecular analysis of an additional case of hybrid sterility in rice (Oryza sativa L.).	Planta.	233(3)	485-94	2011	F5,S24	f5, f5-Du, Sb, S24,S24(t), S24(t)*, Sb, F5-Du
33012	21543899	Engstrom E.M.	Phylogenetic analysis of GRAS proteins from moss, lycophyte and vascular plant lineages reveals that GRAS genes arose and underwent substantial diversification in the ancestral lineage common to bryophytes and vascular plants	Plant Signal Behav	6(6)	850-4	2011		
33013	21594748	Okrent R.A. , Wildermuth M.C.	Evolutionary history of the GH3 family of acyl adenylases in rosids.	Plant Mol. Biol.	76(6)	489-505	2011		
33014	21492454	Venu R. , Sreerekha M. , Nobuta K. , Bel? A. , Ning Y. , An G. , Meyers B.C. , Wang G.L.	Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars.	BMC Genomics	12	190	2011		
33015	21615569	Wang M. , Tang D. , Wang K. , Shen Y. , Qin B. , Miao C. , Li M. , Cheng Z.	OsSGO1 maintains synaptonemal complex stabilization in addition to protecting centromeric cohesion during rice meiosis.	Plant J.	67(4)	583-94	2011	_,SGO1,SGO2,ZEP1,RAD21-4,RMC1,PAIR2,CENH3	OsAM1, SWI1, Osam1, AM1,OsSGO1,OsSGO2,OsZEP1,OsRad21-4, REC8, OsREC8, OsRAD21-4,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,Pair2, OsPAIR2, OsASY1,CENH3, CenH3
33016	21457373	Zhang Y. , Zhang B. , Yan D. , Dong W. , Yang W. , Li Q. , Zeng L. , Wang J. , Wang L. , Hicks L.M. , He Z.	Two Arabidopsis cytochrome P450 monooxygenases, CYP714A1 and CYP714A2, function redundantly in plant development through gibberellin deactivation.	Plant J.	67(2)	342-53	2011		
33017	21459832	Xue G.P. , Way H.M. , Richardson T. , Drenth J. , Joyce P.A. , McIntyre C.L.	Overexpression of TaNAC69 Leads to Enhanced Transcript Levels of Stress Up-Regulated Genes and Dehydration Tolerance in Bread Wheat.	Mol Plant	4(4)	697-712	2011		
33018	21619871	Wakuta S. , Suzuki E. , Saburi W. , Matsuura H. , Nabeta K. , Imai R. , Matsui H.	OsJAR1 and OsJAR2 are jasmonyl-l-isoleucine synthases involved in wound- and pathogen-induced jasmonic acid signalling.	Biochem. Biophys. Res. Commun. 	409(4)	634-9	2011	JAR2,JAR1,JAR3	OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12
33019	21418352	Tang J. , Zhu X. , Wang Y. , Liu L. , Xu B. , Li F. , Fang J. , Chu C.	Semi-dominant mutations in the CC-NB-LRR-type R gene, NLS1, lead to constitutive activation of defense responses in rice.	Plant J.	66(6)	996-1007	2011	PR1B,PR5,NLS1,PR1A,PR10A	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR5, Pir2, PR-5, PR5-1,OsNLS1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33020	21406116	Wang D. , Pan Y. , Zhao X. , Zhu L. , Fu B. , Li Z.	Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice.	BMC Genomics	12	149	2011		
33021	21546455	Yang X. , Yang Y.N. , Xue L.J. , Zou M.J. , Liu J.Y. , Chen F. , Xue H.W.	Rice ABI5-Like1 Regulates Abscisic Acid and Auxin Responses by Affecting the Expression of ABRE-Containing Genes.	Plant Physiol.	156(3)	1397-409	2011	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46
33022	21424397	Costanzo S. , Jackson A.K. , Brooks S.A.	High-resolution mapping of Rsn1, a locus controlling sensitivity of rice to a necrosis-inducing phytotoxin from Rhizoctonia solani AG1-IA.	Theor. Appl. Genet.	123(1)	33-41	2011	RSN1	Rsn1
33023	21512773	Li M. , Sun P. , Zhou H. , Chen S. , Yu S.	Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).	Theor. Appl. Genet.	123(3)	411-20	2011		
33024	21409497	Kuwano M. , Masumura T. , Yoshida K.T.	A novel endosperm transfer cell-containing region-specific gene and its promoter in rice.	Plant Mol. Biol.	76(12)	47-56	2011		
33025	21683874	Ito Y. , Thirumurugan T. , Serizawa A. , Hiratsu K. , Ohme-Takagi M. , Kurata N.	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice.	Plant Sci.	181(2)	105-10	2011	HAP3E	OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L 
33026	21640170	Song J. , Guo B. , Song F. , Peng H. , Yao Y. , Zhang Y. , Sun Q. , Ni Z.	Genome-wide identification of gibberellins metabolic enzyme genes and expression profiling analysis during seed germination in maize.	Gene	482(12)	34-42	2011		
33027	21203887	Sato Y. , Masuta Y. , Saito K. , Murayama S. , Ozawa K.	Enhanced chilling tolerance at the booting stage in rice by transgenic overexpression of the ascorbate peroxidase gene, OsAPXa.	Plant Cell Rep.	30(3)	399-406	2011		
33028	21565907	Endo-Higashi N. , Izawa T.	Flowering Time Genes Heading date 1 and Early heading date 1 Together Control Panicle Development in Rice.	Plant Cell Physiol.	52(6)	1083-94	2011	EF1,SE1,RFT1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
33029	21208999	Yuan T. , Li X. , Xiao J. , Wang S.	Characterization of Xanthomonas oryzae-responsive cis-acting element in the promoter of rice race-specific susceptibility gene Xa13.	Mol Plant	4(2)	300-9	2011	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
33030	21681490	Ding X. , Li X. , Xiong L.	Evaluation of near-isogenic lines for drought resistance QTL and fine mapping of a locus affecting flag leaf width, spikelet number, and root volume in rice.	Theor. Appl. Genet.	123(5)	815-26	2011		
33031	21551159	Yun M.S. , Umemoto T. , Kawagoe Y.	Rice debranching enzyme isoamylase3 facilitates starch metabolism and affects plastid morphogenesis.	Plant Cell Physiol.	52(6)	1068-82	2011	SSIVB,ISA1,_,_,_,ISA3	OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,FtsZ2-1,ARC5, OsARC5, Os ARC5,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,OsISA3
33032	21613379	Cao H. , Guo S. , Xu Y. , Jiang K. , Jones A.M. , Chong K.	Reduced expression of a gene encoding a Golgi localized monosaccharide transporter (OsGMST1) confers hypersensitivity to salt in rice (Oryza sativa).	J. Exp. Bot.		-	2011		
33033	21576467	Danna C.H. , Millet Y.A. , Koller T. , Han S.W. , Bent A.F. , Ronald P.C. , Ausubel F.M.	The Arabidopsis flagellin receptor FLS2 mediates the perception of Xanthomonas Ax21 secreted peptides.	Proc. Natl. Acad. Sci. U.S.A.	108(22)	9286-91	2011		
33034	21543724	Ochiai K. , Shimizu A. , Okumoto Y. , Fujiwara T. , Matoh T.	Suppression of a NAC-Like Transcription Factor Gene Improves Boron-Toxicity Tolerance in Rice.	Plant Physiol.	156(3)	1457-63	2011	BET1	BET1, ONAC081, ONAC81, NAC81
33035	21534973	Giri J. , Vij S. , Dansana P.K. , Tyagi A.K.	Rice A20/AN1 zinc-finger containing stress-associated proteins (SAP1/11) and a receptor-like cytoplasmic kinase (OsRLCK253) interact via A20 zinc-finger and confer abiotic stress tolerance in transgenic Arabidopsis plants.	New Phytol.	191(3)	721-32	2011		
33036	21383162	Zhang B. , Liu X. , Qian Q. , Liu L. , Dong G. , Xiong G. , Zeng D. , Zhou Y.	Golgi nucleotide sugar transporter modulates cell wall biosynthesis and plant growth in rice.	Proc. Natl. Acad. Sci. U.S.A.	108(12)	5110-5	2011	BC14	BC14, OsNST1
33037	21371040	Maathuis F.J.	Vacuolar two-pore K(+) channels act as vacuolar osmosensors.	New Phytol.	191(1)	84-91	2011		
33038	21646530	Asano K. , Yamasaki M. , Takuno S. , Miura K. , Katagiri S. , Ito T. , Doi K. , Wu J. , Ebana K. , Matsumoto T. , Innan H. , Kitano H. , Ashikari M. , Matsuoka M.	From the Cover: Artificial selection for a green revolution gene during japonica rice domestication.	Proc. Natl. Acad. Sci. U.S.A.	108(27)	11034-9	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
33039	21322560	Chuang H.H. , Chen P.T. , Wang W.N. , Chen Y.T. , Shaw J.F.	Functional proteomic analysis of rice bran esterases/lipases and characterization of a novel recombinant esterase.	J. Agric. Food Chem. 	59(5)	2019-25	2011		
33040	21711449	Gao Z. , Zeng D. , Cheng F. , Tian Z. , Guo L. , Su Y. , Yan M. , Jiang H. , Dong G. , Huang Y. , Han B. , Li J. , Qian Q.	ALK, The Key Gene for Gelatinization Temperature, is a Modifier Gene for Gel Consistency in Rice (Oryza sativa L.).	J. Integr. Plant Biol.	53(9)	756-65	2011		
33041	21473768	Xing H. , Pudake R.N. , Guo G. , Xing G. , Hu Z. , Zhang Y. , Sun Q. , Ni Z.	Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize.	BMC Genomics	12	178	2011		
33042	21562335	Ishikawa C. , Hatanaka T. , Misoo S. , Miyake C. , Fukayama H.	Functional incorporation of sorghum small subunit increases the catalytic turnover rate of rubisco in transgenic rice.	Plant Physiol.	156(3)	1603-11	2011		
33043	21511810	Qin B.X. , Tang D. , Huang J. , Li M. , Wu X.R. , Lu L.L. , Wang K.J. , Yu H.X. , Chen J.M. , Gu M.H. , Cheng Z.K.	Rice OsGL1-1 Is Involved in Leaf Cuticular Wax and Cuticle Membrane.	Mol Plant	4(6)	985-995	2011	WSL2	OsGL1-1, WSL2
33044	21715672	Nahar K. , Kyndt T. , de Vleesschauwer D. , Hofte M.M. , Gheysen G.	The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice.	Plant Physiol.	157(1)	305-16	2011		
33045	21697258	Takahashi R. , Ishimaru Y. , Senoura T. , Shimo H. , Ishikawa S. , Arao T. , Nakanishi H. , Nishizawa N.K.	The OsNRAMP1 iron transporter is involved in Cd accumulation in rice.	J. Exp. Bot.		-	2011	NRAMP5,NRAMP6,NRAMP3,NRAMP2,NRAMP4,NRAMP7,NRAMP1	OsNRAMP5, OsNramp5,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6,OsNramp3, OsNRAMP3,OsNramp2, OsNRAMP2,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,OsNRAMP7,OsNramp1, OsNRAMP1, OsNramp6
33046	21534595	Nie Z.J. , Hang B.J. , Cai S. , Xie X.T. , He J. , Li S.P.	Degradation of Cyhalofop-butyl (CyB) by Pseudomonas azotoformans Strain QDZ-1 and Cloning of a Novel Gene Encoding CyB-Hydrolyzing Esterase.	J. Agric. Food Chem. 	59(11)	6040-6	2011		
33047	21502188	Ji X. , Dong B. , Shiran B. , Talbot M.J. , Edlington J.E. , Hughes T. , White R.G. , Gubler F. , Dolferus R.	Control of abscisic Acid catabolism and abscisic Acid homeostasis is important for reproductive stage stress tolerance in cereals.	Plant Physiol.	156(2)	647-62	2011	ABA8OX2,_,ABA8OX1,ABA8OX3,NCED1,NCED2,NCED3,OSC6,ABA1	OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,OSINV4, OsINV4, INV4, OsCIN3,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP
33049	21502185	Jia H. , Ren H. , Gu M. , Zhao J. , Sun S. , Zhang X. , Chen J. , Wu P. , Xu G.	The Phosphate Transporter Gene OsPht1;8 Is Involved in Phosphate Homeostasis in Rice.	Plant Physiol.	156(3)	1164-75	2011	PT8	OsPT8, PHT1-8, OsPht1;8, Pht1;8
33050	21148627	Yan W.H. , Wang P. , Chen H.X. , Zhou H.J. , Li Q.P. , Wang C.R. , Ding Z.H. , Zhang Y.S. , Yu S.B. , Xing Y.Z. , Zhang Q.F.	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.	Mol Plant	4(2)	319-30	2011		
33051	21585570	Utsunomiya Y. , Samejima C. , Takayanagi Y. , Izawa Y. , Yoshida T. , Sawada Y. , Fujisawa Y. , Kato H. , Iwasaki Y.	Suppression of the rice heterotrimeric G?protein beta-subunit gene, RGB1, causes dwarfism and browning of internodes and lamina joint regions.	Plant J.	67(5))	907-16	2011	D1,RGB1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,OsWD40-80, RGbeta1
33052	21458419	Kim J.H. , Jung I.J. , Kim D.Y. , Fanata W.I. , Son B.H. , Yoo J.Y. , Harmoko R. , Ko K.S. , Moon J.C. , Jang H.H. , Kim W.Y. , Kim J.Y. , Lim C.O. , Lee S.Y. , Lee K.O.	Proteomic identification of an embryo-specific 1Cys-Prx promoter and analysis of its activity in transgenic rice.	Biochem. Biophys. Res. Commun. 	408(1)	78-83	2011		
33053	21631728	Du C. , Xu Y. , Wang Y. , Chong K.	ARF-GAP Stimulates the Transport of AUX1 Endosome, Which Relies on Actin Cytoskeletal Organization in Rice Root Development.	J. Integr. Plant Biol.	53(9)	698-709	2011	AGAP	OsAGAP
33055	21544623	Azria D. , Bhalla P.L.	Agrobacterium-mediated transformation of Australian rice varieties and promoter analysis of major pollen allergen gene, Ory s 1.	Plant Cell Rep.	30(9)	1673-81	2011		
33056	21499841	Gao T. , Wu Y. , Zhang Y. , Liu L. , Ning Y. , Wang D. , Tong H. , Chen S. , Chu C. , Xie Q.	OsSDIR1 overexpression greatly improves drought tolerance in transgenic rice.	Plant Mol. Biol.	76(12)	145-56	2011	_	OsSDIR1, SDIR1
33057	21487048	Hu J. , Zhou J. , Peng X. , Xu H. , Liu C. , Du B. , Yuan H. , Zhu L. , He G.	The bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding.	Plant Physiol.	156(2)	856-72	2011	_,ERF86,BZIP50,BWMK1,_,_,_,MSRMK2	OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, ,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,SDRP,OsMPK17, OsMPK21-1,bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
33058	21673515	Takanashi H. , Ohnishi T. , Mogi M. , Hirata Y. , Tsutsumi N.	DCL2 is highly expressed in the egg cell in both rice and Arabidopsis.	Plant Signal Behav	6(4)	604-6	2011		
33059	21637806	Shao J. , Zhang Y. , Yu J. , Guo L. , Ding Y.	Isolation of Thylakoid Membrane Complexes from Rice by a New Double-Strips BN/SDS-PAGE and Bioinformatics Prediction of Stromal Ridge Subunits Interaction.	PLoS One	6(5)	e20342	2011		
33060	21375689	Jiang H. , Chen Y. , Li M. , Xu X. , Wu G.	Overexpression of SGR results in oxidative stress and lesion-mimic cell death in rice seedlings.	J. Integr. Plant Biol.	53(5)	375-87	2011		
33061	21402917	Schmelz E.A. , Kaplan F. , Huffaker A. , Dafoe N.J. , Vaughan M.M. , Ni X. , Rocca J.R. , Alborn H.T. , Teal P.E.	Identity, regulation, and activity of inducible diterpenoid phytoalexins in maize.	Proc. Natl. Acad. Sci. U.S.A.	108(13)	5455-60	2011		
33062	21591772	Jeong J.W. , Nam P.W. , Lee S.J. , Lee K.G.	Antioxidant activities of korean rice wine concentrates.	J. Agric. Food Chem. 	59(13)	7039-44	2011		
33063	21605340	Cheng Z.J. , Mao B.G. , Gao S.W. , Zhang L. , Wang J.L. , Lei C.L. , Zhang X. , Wu F.Q. , Guo X.P. , Wan J.	Fine Mapping of?qPAA8, a Gene Controlling Panicle Apical Development in Rice.	J. Integr. Plant Biol.	53(9)	710-8	2011		
33064	21543885	Takasugi T. , Ito Y.	Altered expression of auxin-related genes in the fatty acid elongase mutant oni1 of rice.	Plant Signal Behav	6(6)	887-8	2011		
33065	21302323	Li X. , Xiong H. , Yang K. , Peng D. , Li W. , Yin Y. , Liu J.	Effects of rice dreg protein and its hydrolysate on growth performance and small intestine morphology of early-weaned rats.	J. Sci. Food Agric.	91(4)	687-93	2011		
33066	21385395	Tian Z. , Yu Y. , Lin F. , Yu Y. , Sanmiguel P.J. , Wing R.A. , McCouch S.R. , Ma J. , Jackson S.A.	Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis.	BMC Genomics	12	142	2011		
33067	21447055	Li M. , Tang D. , Wang K. , Wu X. , Lu L. , Yu H. , Gu M. , Yan C. , Cheng Z.	Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice.	Plant Biotechnol J.	9(9)	1002-1013	2011	EP3	EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3
33068	21418356	Sakamoto T. , Kawabe A. , Tokida-Segawa A. , Shimizu B. , Takatsuto S. , Shimada Y. , Fujioka S. , Mizutani M.	Rice CYP734As function as multisubstrate and multifunctional enzymes in brassinosteroid catabolism.	Plant J.	67(1)	1-12	2011	CYP734A4,CYP734A6,CYP734A2,CYP734A5	OsCYP734A4,OsCYP734A6 ,OsCYP734A2,
33069	21719639	Ning Y. , Jantasuriyarat C. , Zhao Q. , Zhang H. , Chen S. , Liu J. , Liu L. , Tang S. , Park C.H. , Wang X. , Liu X. , Dai L. , Xie Q. , Wang G.L.	The SINA E3 ligase OsDIS1 Negatively Regulates Drought Response in Rice.	Plant Physiol.	157(1)	242-55	2011	_,_,_	OsBIRF1,OsDIS1,OsNek6
33070	21635585	Wu J. , Du H. , Liao X. , Zhao Y. , Li L. , Yang L.	Tn5 Transposase-assisted Transformation of Indica Rice.	Plant J.	68(1)	186-200	2011		
33071	21436381	Utsumi Y. , Utsumi C. , Sawada T. , Fujita N. , Nakamura Y.	Functional diversity of isoamylase oligomers: the ISA1 homo-oligomer is essential for amylopectin biosynthesis in rice endosperm.	Plant Physiol.	156(1)	61-77	2011	ISA2,ISA1	OsISA2,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1
33072	21483860	Bi F.C. , Zhang Q.F. , Liu Z. , Fang C. , Li J. , Su J.B. , Greenberg J.T. , Wang H.B. , Yao N.	A conserved cysteine motif is critical for rice ceramide kinase activity and function.	PLoS One	6(3)	e18079	2011	_	OsCERK
33073	21512732	Ishikawa R. , Aoki M. , Kurotani K. , Yokoi S. , Shinomura T. , Takano M. , Shimamoto K.	Phytochrome B regulates Heading date 1 (Hd1)-mediated expression of rice florigen Hd3a and critical day length in rice.	Mol. Genet. Genomics	285(6)	461-70	2011	HD3A,SE1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
33074	21324061	Gan Q. , Bai H. , Zhao X. , Tao Y. , Zeng H. , Han Y. , Song W. , Zhu L. , Liu G.	Transcriptional characteristics of Xa21-mediated defense responses in rice.	J. Integr. Plant Biol.	53(4)	300-11	2011		
33075	21547461	Zhang C.Q. , Xu Y. , Lu Y. , Yu H.X. , Gu M.H. , Liu Q.Q.	The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice.	Planta.	234(3)	541-54	2011		
33076	21575088	Chakravorty D. , Trusov Y. , Zhang W. , Acharya B.R. , Sheahan M.B. , McCurdy D.W. , Assmann S.M. , Botella J.R.	An atypical heterotrimeric G-protein gamma-subunit is involved in guard cell K(+) -channel regulation and morphological development in Arabidopsis thaliana.	Plant J.	67(5)	840-51@	2011		
33077	21655219	Zha W. , Peng X. , Chen R. , Du B. , Zhu L. , He G.	Knockdown of Midgut Genes by dsRNA-Transgenic Plant-Mediated RNA Interference in the Hemipteran Insect Nilaparvata lugens.	PLoS One	6(5)	e20504	2011		
33078	21384112	Zhang Y.X. , Wang Q. , Jiang L. , Liu L.L. , Wang B.X. , Shen Y.Y. , Cheng X.N. , Wan J.M.	Fine mapping of qSTV11(KAS), a major QTL for rice stripe disease resistance.	Theor. Appl. Genet.	122(8)	1591-604	2011		
33079	21443626	Feller A. , Machemer K. , Braun E.L. , Grotewold E.	Evolutionary and comparative analysis of MYB and bHLH plant transcription factors.	Plant J.	66(1)	94-116	2011		
33080	21501172	Inagaki Y.S. , Etherington G. , Geisler K. , Field B. , Dokarry M. , Ikeda K. , Mutsukado Y. , Dicks J. , Osbourn A.	Investigation of the potential for triterpene synthesis in rice through genome mining and metabolic engineering.	New Phytol.	191(2)	432-48	2011	_,_,_,_,_,_,CYP51G1,CYP51G4,CYP51H1,CYP51H2,CYP51H3,CYP51H4,CYP51H6,CYP51H7,CYP51H8,CYP51H9,_,_,_,_,_,CYP51H5,_,CYP51G3	OsOSC1,OsOSC9,OsOSC10,OsOSC12,OsOSC2, CAS1,OsOSC8,OsCYP51G1,OsCYP51G4,OsCYP51H1,OsCYP51H2,OsCYP51H3,OsCYP51H4,OsCYP51H6,OsCYP51H7,OsCYP51H8,OsCYP51H9,OsOSC3,OsOSC4,OsOSC5,OsOSC6,OsIAS, OsOSC11, IAS, OSC11,OsCYP51H5,OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j ,OsCYP51G3
33081	21673510	Toriba T. , Ohmori Y. , Hirano H.Y.	Common and distinct mechanisms underlying the establishment of adaxial and abaxial polarity in stamen and leaf development.	Plant Signal Behav	6(3)	430-3	2011		
33082	21546791	Kang K. , Park S. , Kim Y.S. , Back K.	Methanol elicits the biosynthesis of 4-coumaroylserotonin and feruloylserotonin in rice seedlings.	Plant Signal Behav	6(6)	881-3	2011		
33083	21369877	Kong X.Q. , Gao X.H. , Sun W. , An J. , Zhao Y.X. , Zhang H.	Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1.	Plant Mol. Biol.	75(6)	567-78	2011	_	Os CCC1, OsCCC1, CCC1, OsLAT9 
33084	21705640	Tanaka N. , Itoh H. , Sentoku N. , Kojima M. , Sakakibara H. , Izawa T. , Itoh J.I. , Nagato Y.	The COP1 Ortholog PPS Regulates the Juvenile-Adult and Vegetative-Reproductive Phase Changes in Rice.	Plant Cell	23(6)	2143-54	2011	PPS	OsWD40-55, OsCOP1, COP1
33085	21683877	Ushijima T. , Matsusaka H. , Jikuya H. , Ogawa M. , Satoh H. , Kumamaru T.	Genetic analysis of cysteine-poor prolamin polypeptides reduced in the endosperm of the rice esp1 mutant.	Plant Sci.	181(2)	125-31	2011		
33086	21543727	Saika H. , Oikawa A. , Matsuda F. , Onodera H. , Saito K. , Toki S.	Application of gene targeting to designed mutation breeding of high-tryptophan rice.	Plant Physiol.	156(3)	1269-77	2011	ASA2	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2
33087	21448719	Song S.Y. , Chen Y. , Chen J. , Dai X.Y. , Zhang W.H.	Physiological mechanisms underlying OsNAC5-dependent tolerance of rice plants to abiotic stress.	Planta.	234(2)	331-45	2011		
33088	21209026	Kotake T. , Aohara T. , Hirano K. , Sato A. , Kaneko Y. , Tsumuraya Y. , Takatsuji H. , Kawasaki S.	Rice Brittle culm 6 encodes a dominant-negative form of CesA protein that perturbs cellulose synthesis in secondary cell walls.	J. Exp. Bot.	62(6)	2053-62	2011	CESA1,CESA2,CESA6,CESA5,CESA8,BC6,CSLA1,CSLC1,CSLE1,CSLF1,CSLH1,CESA3	OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA2, OsCESA2, OS_CESA02,OsCesA6, OsCESA6, OS_CESA06,OsCesA5, OsCESA5, OS_CESA05,OsCesA8, OsCESA8, OS_CESA08, CesA8,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCslA1, OsCSLA1 ,OsCslC1, OsCSLC1,OsCslE1, OsCSLE1 ,OsCslF1, OsCSLF1 ,OsCslH1, OsCSLH1 ,OsCesA3, OsCESA3, OS_CESA03
33089	21408199	Sun X. , Wang G.L.	Genome-wide identification, characterization and phylogenetic analysis of the rice LRR-kinases.	PLoS One	6(3)	e16079	2011	FON1,_,_,_,MSP1,D61,_,_,_,RLCK222,BRL1,RLCK24,_,_,_,_,_,_,_,PEPR1,SYMRK,_,RLCK204,XA3	OsFON1, fon1, OsRLCK219, RLCK219,,Os-FLS2, FLS2, OsFLS2,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,Msp1, OsMSP1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,,,,OsRLCK222,OsBRL1,OsRLCK24,HAIKU2,,,,,OsSERL5, OsBAK1-4, SERK1,Xa21, OsXA21, OsXA21-C11, XA21-C11,OsPEPR1,OsSYMRK,OsSERL2, SERL2, SERK1, OsBAK1-7, BAK1-7,OsRLCK204, OsER1, ER1,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
33090	21215616	Lou L. , Wu B. , Wang L. , Luo L. , Xu X. , Hou J. , Xun B. , Hu B. , Chen Y.	Sorption and ecotoxicity of pentachlorophenol polluted sediment amended with rice-straw derived biochar.	Bioresource technology	102(5)	4036-41	2011		
33091	21602276	Ishimaru Y. , Kakei Y. , Shimo H. , Bashir K. , Sato Y. , Sato Y. , Uozumi N. , Nakanishi H. , Nishizawa N.K.	A rice phenolic efflux transporter is essential for solubilizing precipitated apoplasmic iron in the plant stele.	J. Biol. Chem.	286(28)	24649-55	2011	_,_	PEZ2,PEZ1, OsPEZ1
33092	21426477	Lee S. , Persson D.P. , Hansen T.H. , Husted S. , Schjoerring J.K. , Kim Y.S. , Jeon U.S. , Kim Y.K. , Kakei Y. , Masuda H. , Nishizawa N.K. , An G.	Bio-available zinc in rice seeds is increased by activation tagging of nicotianamine synthase.	Plant Biotechnol J.	9(8)	865-73	2011		
33093	21481033	Kitomi Y. , Ito H. , Hobo T. , Aya K. , Kitano H. , Inukai Y.	The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.	Plant J.	67(3)	472-84	2011	PLT8,RR1,RR2,CRL1	OsPLT8, CRL5, AP2/EREBP141, AP2/EREBP#141 ,rr1, OsRR1, Rra9, OsRRA9,rr2, Osrr2, OsRR2, Rra10, OsRRA10,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
33094	21606318	Shao T. , Tang D. , Wang K. , Wang M. , Che L. , Qin B. , Yu H. , Li M. , Gu M. , Cheng Z.	OsREC8 Is Essential for Chromatid Cohesion and Metaphase I Monopolar Orientation in Rice Meiosis.	Plant Physiol.	156(3)	1386-96	2011	RAD21-4	OsRad21-4, REC8, OsREC8, OsRAD21-4
33095	21521743	Nagamine A. , Matsusaka H. , Ushijima T. , Kawagoe Y. , Ogawa M. , Okita T.W. , Kumamaru T.	A Role for the Cysteine-Rich 10 kDa Prolamin in Protein Body I Formation in Rice.	Plant Cell Physiol.	52(6)	1003-16	2011	_,_,_,_	CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,CysR14,CysR16,Prol-01, CysR10, crP10, pro10.1
33096	21205187	Shen P. , Wang R. , Jing W. , Zhang W.	Rice phospholipase Dalpha is involved in salt tolerance by the mediation of H(+)-ATPase activity and transcription.	J. Integr. Plant Biol.	53(4)	289-99	2011		
33097	21645201	Kharabian-Masouleh A. , Waters D.L. , Reinke R.F. , Henry R.J.	Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing	Plant Biotechnol J.	9(9)	1074-1085	2011		
33098	21410288	Wakasa Y. , Tamakoshi C. , Ohno T. , Hirose S. , Goto T. , Nagaoka S. , Takaiwa F.	The hypocholesterolemic activity of transgenic rice seed accumulating lactostatin, a bioactive peptide derived from bovine milk beta-lactoglobulin.	J. Agric. Food Chem. 	59(8)	3845-50	2011		
33099	21527628	Zhang L. , Xiao S. , Li W. , Feng W. , Li J. , Wu Z. , Gao X. , Liu F. , Shao M.	Overexpression of a Harpin-encoding gene hrf1 in rice enhances drought tolerance.	J. Exp. Bot.	62(12)	4229-38	2011		
33100	21490163	Moore K.L. , Schr?der M. , Wu Z. , Martin B.G. , Hawes C.R. , McGrath S.P. , Hawkesford M.J. , Feng Ma J. , Zhao F.J. , Grovenor C.R.	High-resolution secondary ion mass spectrometry reveals the contrasting subcellular distribution of arsenic and silicon in rice roots.	Plant Physiol.	156(2)	913-24	2011	LSI2	Lsi2, SIET1, OsLsi2
33101	21501886	Yang Y. , Yu C.L. , Wang X.M. , Yan C.Q. , Cheng Y. , Chen J.P.	Inoculation with Xanthomonas oryzae pv. oryzae induces thylakoid membrane association of Rubisco activase in Oryza meyeriana.	J. Plant Physiol.	168(14)	1701-4	2011		
33102	21596949	Zou L.P. , Sun X.H. , Zhang Z.G. , Liu P. , Wu J.X. , Tian C.J. , Qiu J.L. , Lu T.G.	Leaf Rolling Controlled by the Homeodomain Leucine Zipper Class IV Gene Roc5 in Rice.	Plant Physiol.	156(3)	1589-602	2011	ROC5,_	Roc5(t), Roc5, GL2-5, OsROC5,PFL
33103	21274561	Shaw D.J. , Gray J.C.	Visualisation of stromules in transgenic wheat expressing a plastid-targeted yellow fluorescent protein.	Planta.	233(5)	961-70	2011		
33104	21638061	Ying S. , Zhang D.F. , Li H.Y. , Liu Y.H. , Shi Y.S. , Song Y.C. , Wang T.Y. , Li Y.	Cloning and characterization of a maize SnRK2 protein kinase gene confers enhanced salt tolerance in transgenic Arabidopsis.	Plant Cell Rep.	30(9)	1683-99	2011		
33105	21518249	Guo T. , Liu X. , Wan X. , Weng J. , Liu S. , Liu X. , Chen M. , Li J. , Su N. , Wu F. , Cheng Z. , Guo X. , Lei C. , Wang J. , Jiang L. , Wan J.	Identification of a Stable Quantitative Trait Locus for Percentage Grains with White Chalkiness in Rice (Oryza sativa).	J. Integr. Plant Biol.	53(8)	598-607	2011		
33106	21540434	Gallavotti A. , Malcomber S. , Gaines C. , Stanfield S. , Whipple C. , Kellogg E. , Schmidt R.J.	BARREN STALK FASTIGIATE1 Is an AT-Hook Protein Required for the Formation of Maize Ears.	Plant Cell	23(5)	1756-71	2011		
33107	21443632	Nelson D. , Werck-Reichhart D.	A P450-centric view of plant evolution.	Plant J.	66(1)	194-211	2011		
33108	21493745	Shen Y. , Wang J. , Ding Y. , Lo S.W. , Gouzerh G. , Neuhaus J.M. , Jiang L.	The Rice RMR1 Associates with a Distinct Prevacuolar Compartment for the Protein Storage Vacuole Pathway.	Mol Plant	4(5)	854-68	2011	_,_	OsRMR2,OsRMR3, OsRMR1, RMR1
33109	21294842	Liang F. , Xin X. , Hu Z. , Xu J. , Wei G. , Qian X. , Yang J. , He H. , Luo X.	Genetic analysis and fine mapping of a novel semidominant dwarfing gene LB4D in rice.	J. Integr. Plant Biol.	53(4)	312-23	2011		
33110	20978084	Wang X.F. , He F.F. , Ma X.X. , Mao C.Z. , Hodgman C. , Lu C.G. , Wu P.	OsCAND1 is required for crown root emergence in rice.	Mol Plant	4(2)	289-99	2011		
33111	21502187	Tsutsui T. , Yamaji N. , Feng Ma J.	Identification of a Cis-Acting Element of ART1, a C2H2-Type Zinc-Finger Transcription Factor for Aluminum Tolerance in Rice.	Plant Physiol.	156(2)	925-31	2011	STAR1,ART1,STAR2	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,ART1, STAR3,OsSTAR2, OsSATR2
33112	21573806	Wang S.J. , Ho C.H. , Chen H.W.	Rice develop wavy seminal roots in response to light stimulus.	Plant Cell Rep.	30(9)	1747-58	2011		
33113	21467577	Li X. , Gao X. , Wei Y. , Deng L. , Ouyang Y. , Chen G. , Li X. , Zhang Q. , Wu C.	Rice APOPTOSIS INHIBITOR5 coupled with two DEAD-box adenosine 5'-triphosphate-dependent RNA helicases regulates tapetum degeneration.	Plant Cell	23(4)	1416-34	2011	AIP2,API5,CP1,AIP1	AIP2, Os AIP2, OsAIP2, OsRH15,API5, Os API5, OsAPI5,OsCP1, Os CP1,AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56
33114	20882959	Shimazu S. , Inui H. , Ohkawa H.	Phytomonitoring and phytoremediation of agrochemicals and related compounds based on recombinant cytochrome P450s and aryl hydrocarbon receptors (AhRs).	J. Agric. Food Chem. 	59(7)	2870-5	2011		
33115	21689368	Gray B.N. , Bougri O. , Carlson A.R. , Meissner J. , Pan S. , Parker M.H. , Zhang D. , Samoylov V. , Ekborg N.A. , Michael Raab R.	Global and grain-specific accumulation of glycoside hydrolase family 10 xylanases in transgenic maize (Zea mays).	Plant Biotechnol J.	9(9)	1100-8	2011		
33116	21178395	Kumar K. , Rao K.P. , Biswas D.K. , Sinha A.K.	Rice WNK1 is regulated by abiotic stress and involved in internal circadian rhythm.	Plant Signal Behav	6(3)	316-20	2011	WNK3,WNK5,WNK2,WNK4,WNK6,WNK8,WNK1,WNK9,WNK7	OsWNK3,OsWNK5,OsWNK2,OsWNK4,OsWNK6,OsWNK8,OsWNK1,OsWNK9,OsWNK7
33117	21411180	Liu Y. , He J. , Jiang L. , Wu H. , Xiao Y. , Liu Y. , Li G. , Du Y. , Liu C. , Wan J.	Nitric oxide production is associated with response to brown planthopper infestation in rice.	J. Plant Physiol.	168(8)	739-45	2011	LEA3-1,_,_	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsNR,OsNOA1
33118	21637999	Kovi M.R. , Zhang Y. , Yu S. , Yang G. , Yan W. , Xing Y.	Candidacy of a chitin-inducible gibberellin-responsive gene for a major locus affecting plant height in rice that is closely linked to Green Revolution gene sd1.	Theor. Appl. Genet.	123(5)	705-14	2011		
33119	21220781	Feng H. , Yan M. , Fan X. , Li B. , Shen Q. , Miller A.J. , Xu G.	Spatial expression and regulation of rice high-affinity nitrate transporters by nitrogen and carbon status.	J. Exp. Bot.	62(7)	2319-32	2011	NRT2.4,NRT2.3,NRT2.2,NAR2.1,NAR2.2,NRT2.1	OsNRT2.4,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.2, OsNRT2.1,OsNAR2.1, OsNRT3.1A,OsNAR2.2, OsNRT3.1B,OsNRT2.1, OsNRT2.2
33120	21416255	Guan H. , Zheng Z. , Grey P.H. , Li Y. , Oppenheimer D.G.	Conservation and divergence of plant LHP1 protein sequences and expression patterns in angiosperms and gymnosperms.	Mol. Genet. Genomics	285(5)	357-73	2011	_	LHP1, OsLHP1
33121	21598083	Zang B. , Li H. , Li W. , Deng X.W. , Wang X.	Analysis of trehalose-6-phosphate synthase (TPS) gene family suggests the formation of TPS complexes in rice.	Plant Mol. Biol.	76(6)	507-22	2011	TPS2,TPS3,TPS4,TPS5,TPS6,TPS7,TPS9,TPS10,TPS11,TPS1,TPS8	OsTPS2,OsTPS3,OsTPS4,OsTPS5,OsTPS6,OsTPS7,OsTPS9,OsTPS10,OsTPS11,OsTPS1,OsTPS8, OsTPS1, TPS1
33122	21384360	Li C. , Cao X. , Gu Z. , Wen H.	A preliminary study of the protease activities in germinating brown rice (Oryza sativa L.).	J. Sci. Food Agric.	91(5)	915-20	2011		
33123	21586431	Mitani-Ueno N. , Yamaji N. , Zhao F.J. , Ma J.F.	The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron, and arsenic.	J. Exp. Bot.	62(12)	4391-8	2011		
33124	21698394	Su Y. , Rao Y. , Hu S. , Yang Y. , Gao Z. , Zhang G. , Liu J. , Hu J. , Yan M. , Dong G. , Zhu L. , Guo L. , Qian Q. , Zeng D.	Map-based cloning proves qGC-6, a major QTL for gel consistency of japonica/indica cross, responds by Waxy in rice (Oryza sativa L.).	Theor. Appl. Genet.	123(5)	859-67	2011		
33125	21364321	Kishimoto K. , Kouzai Y. , Kaku H. , Shibuya N. , Minami E. , Nishizawa Y.	Enhancement of MAMP signaling by chimeric receptors improves disease resistance in plants.	Plant Signal Behav	6(3)	449-51	2011		
33126	21398647	Ye N. , Zhu G. , Liu Y. , Li Y. , Zhang J.	ABA controls H?O? accumulation through the induction of OsCATB in rice leaves under water stress.	Plant Cell Physiol.	52(4)	689-98	2011		
33127	21497713	Bae H. , Kim S.K. , Cho S.K. , Kang B.G. , Kim W.T.	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.).	Plant Sci.	180(6)	775-82	2011	RDCP1,RDCP3,RDCP4,PUB15,RDCP2,DSG1	OsRDCP1,OsRDCP3,OsRDCP4,OsPUB15,OsRDCP2,OsDSG1, DSG1
33128	21610181	Horie T. , Brodsky D.E. , Costa A. , Kaneko T. , Lo Schiavo F. , Katsuhara M. , Schroeder J.I.	K+ Transport by the OsHKT2;4 Transporter from Rice with Atypical Na+ Transport Properties and Competition in Permeation of K+ over Mg2+ and Ca2+ Ions.	Plant Physiol.	156(3)	1493-507	2011	HKT1,HKT9,HKT3	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsHKT9, OsHKT2;4,OsHKT3, OsHKT2;3
33130	21418523	Lu B. , Xie K. , Yang C. , Zhang L. , Wu T. , Liu X. , Jiang L. , Wan J.	Genetic analysis of two weak dormancy mutants derived from strong seed dormancy wild type rice N22 (Oryza sativa).	J. Integr. Plant Biol.	53(5)	338-46	2011		
33131	21039565	Steffens B. , Geske T. , Sauter M.	Aerenchyma formation in the rice stem and its promotion by H2O2.	New Phytol.	190(2)	369-78	2011		
33132	21637772	Griffiths J. , Barrero J.M. , Taylor J. , Helliwell C.A. , Gubler F.	ALTERED MERISTEM PROGRAM 1 Is involved in Development of Seed Dormancy in Arabidopsis.	PLoS One	6(5)	e20408	2011		
33133	21717189	Fukumoto T. , Kano A. , Ohtani K. , Yamasaki-Kokudo Y. , Kim B.G. , Hosotani K. , Saito M. , Shirakawa C. , Tajima S. , Izumori K. , Ohara T. , Shigematsu Y. , Tanaka K. , Ishida Y. , Nishizawa Y. , Tada Y. , Ichimura K. , Gomi K. , Akimitsu K.	Rare sugar D: -allose suppresses gibberellin signaling through hexokinase-dependent pathway in Oryza sativa L.	Planta.	234(6)	1083-1095	2011		
33134	21705388	Li X. , Bai H. , Wang X. , Li L. , Cao Y. , Wei J. , Liu Y. , Liu L. , Gong X. , Wu L. , Liu S. , Liu G.	Identification and validation of rice reference proteins for western blotting.	J. Exp. Bot.	62(14)	4763-72	2011		
33135	21628471	Hirai H. , Takai R. , Iwano M. , Nakai M. , Kondo M. , Takayama S. , Isogai A. , Che F.S.	Glycosylation regulates the specific induction of rice immune responses by Acidovorax avenae flagellin.	J. Biol. Chem.	286(29)	25519-30	2011		
33136	21447996	Fu J. , Yu H. , Li X. , Xiao J. , Wang S.	Rice GH3 gene family: Regulators of growth and development.	Plant Signal Behav	6(4)	570-4	2011		
33137	21624978	He J.H. , Shahid M.Q. , Li Y.J. , Guo H.B. , Cheng X.A. , Liu X.D. , Lu Y.G.	Allelic interaction of F1 pollen sterility loci and abnormal chromosome behaviour caused pollen sterility in intersubspecific autotetraploid rice hybrids.	J. Exp. Bot.	62(13)	4433-45	2011	SB	Sb*, Hst17, S24, F5-Du
33138	21705642	Shi J. , Tan H. , Yu X.H. , Liu Y. , Liang W. , Ranathunge K. , Franke R.B. , Schreiber L. , Wang Y. , Kai G. , Shanklin J. , Ma H. , Zhang D.	Defective Pollen Wall Is Required for Anther and Microspore Development in Rice and Encodes a Fatty Acyl Carrier Protein Reductase.	Plant Cell	23(6)	2225-46	2011	DEX1,RAFTIN1,WDA1,CER1,NEF1,_,CYP704B2	Os DEX1, OsDEX1,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsCER1, OsGL1-4, Os CER1,Os NEF1, OsNEF1,OsMS2, MS2, OsDPW, DPW, DPW1,OsCYP704B2
33139		Yoshimura, A., Nagayama, H., Sobrizal, Kurakazu, T., Sanchez, P. L., Doi, K., Yamagata, Y., et al.	Introgression lines of rice (Oryza sativa L.) carrying a donor genome from the wild species, O. glumaepatula Steud. and O. meridionalis Ng.	Breeding Science	60(5)	597-603	2010		
33140		Katsuyuki Ichitani, Satoru Taura,Takahiro Tezuka,Yuuya Okiyama,Tsutomu Kuboyama,	Chromosomal Location of HWA1 and HWA2,Complementary Hybrid Weakness Genes in Rice,	RICE	4(2)	29-38	2011	HWA2,HWA1	Hwa2(L1b), L-1-b(Lb), L1b, Hwa2,Hwa1(L1a), L-1-a(La), L1a, Hwa1
33141	17257172	Shima S, Matsui H, Tahara S, Imai R.	Biochemical characterization of rice trehalose-6-phosphate phosphatases supports distinctive functions of these plant enzymes.	FEBS J.	274(5)	1192-201.	2007	TPP3,TPP9,TPP7,TPP8,TPP1,TPP2,TPP6,SALT,MKK6,TPP5,TPP4	OsTPP3,OsTPP9,OsTPP7,OsTPP8, OsTPP2,OsTPP1, OsTPS,OsTPP2,OsTPP6,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsMKK6, OsMEK1,OsTPP5,OsTPP4, OsTPP7
33142		Wei, C.a , Xie, P.a , Chen, Y.b , Yu, H.b , Su, Y.c , Gu, M.a , Yan, C	Anatomical and chemical characteristics of culm of rice brittle mutant bc(t).	Funct. Plant Biol.	38(3)	227-235	2011		
33143	21602323	Chin,J.H., Gamuyao,R., Dalid,C., Bustamam,M., Prasetiyono,J., Moeljopawiro,S., Wissuwa,M. and Heuer,S.	Developing Rice with High Yield under Phosphorus Deficiency: Pup1 Sequence to Application	Plant Physiol.	156(3)	1202-1216	2011	_,_,_,_,_,_,PSTOL1,_	OsPupK04-1,OsPupK01,OsPupK53,OsPupK67,OsPupK05-1,OsPupK20-2,Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPupK29-1
33144	21763541	Fang,S.A., Eu,T.I. and Chung,M.C.	Isolation and characterization of genome-specific markers in Oryza species with the BB genome	Plant Sci.	181(3)	300-308	2011		
33145	15032821	Fukuda,A., Okada,Y., Suzui,N., Fujiwara,T., Yoneyama,T. and Hayashi,H.	Cloning and characterization of the gene for a phloem-specific glutathione S-transferase from rice leaves	Physiol. Plantarum			2003		
33146	8811865	Groom,Q.J., Torres,M.A., Fordham-Skelton,A.P., Hammond-Kosack,K.E., Robinson,N.J. and Jones,J.D.G.	rbohA, a rice homologue of the mammalian gp91phox respiratory burst oxidase gene	Plant J.					
33147	0	Suzuki,Y., Takeuchi,Y. and Shirasawa,K.	Identification of a seed phospholipase D null allele in rice (Oryza sativa L.) and development of SNP markers for phospholipase D deficiency	Crop Sci.			2011	PLDalpha1	RPLD1, PLD1, OsPLDalpha1
33148	21674010	Xie,X., Molina,J., Hernandez,R., Reynolds,A., Boyko,A.R., Bustamante,C.D. and Purugganan,M.D.	Levels and Patterns of Nucleotide Variation in Domestication QTL Regions on Rice Chromosome 3 Suggest Lineage-Specific Selection	PLoS ONE	6 (6)	E20670	2011		
33149	10805599	Chae HS, Cho YG, Park MY, Lee MC, Eun MY, Kang BG, Kim WT	Hormonal cross-talk between auxin and ethylene differentially regulates@the expression of two members of the 1-aminocyclopropane-1-carboxylate oxidase gene family in rice (Oryza sativa L.).	Plant Cell Physiol	41	354-362	2000	ACO3,ACO2	OsACO3,OsACO2
33150	20502443	Li F, Liu W, Tang J, Chen J, Tong H, Hu B, Li C, Fang J, Chen M,Chu C	Rice DENSE AND ERECT PANICLE 2 is essential@for determining panicle outgrowth and elongation.	Cell Res	20	838-849	2010	DEP2	
33151	21447056	Okumura K., Hirasawa M., Yang L., Suzuki K., Mori A., Ohmachi Y., Takaiwa F., Hiroi T., Takada K., Ohtomo T., Hirose S., Kaminuma O., Takai T., Noda Y., Ogawa H., Umezu-Goto M.	Prevention of allergic asthma by vaccination with transgenic rice seed expressing mite allergen: induction of allergen-specific oral tolerance without bystander suppression.	Plant biotechnology journal	9(9)	982-90	2011		
33152	21278385	Umezu N., Kondo K., Hanzawa N., Mitsui T., Maruta S., Yamada M.D.	Biochemical characterization of the novel rice kinesin K23 and its kinetic study using fluorescence resonance energy transfer between an intrinsic tryptophan residue and a fluorescent ATP analogue.	Journal of biochemistry	149(5)	539-50	2011		
33153	21718517	Zhang B., Ke Y., Zhang W., Yang Q., He H., Wang Y., Zhou J., Chen X.	Phosphoproteins regulated by heat stress in rice leaves.	Proteome science	9	37	2011		
33154	21486466	Helmy M., Ishihama Y., Tomita M.	OryzaPG-DB: rice proteome database based on shotgun proteogenomics.	BMC Plant Biology	11	63	2011		
33155	21435050	Kariya A., Shimizu S., Aida M., Hanano K., Zhao L., Tasaka M., Takeda S., Matsui M.	CUP-SHAPED COTYLEDON1 transcription factor activates the expression of LSH4 and LSH3, two members of the ALOG gene family, in shoot organ boundary cells.	The Plant journal : for cell and molecular biology	66(6)	1066-77	2011		
33156	21610725	Takanashi H., Ishimaru Y., Bashir K., Fujimoto M., Shimo H., An G., Nagasaka S., Nishizawa N.K., Nakanishi H., Tsutsumi N.	The rice mitochondrial iron transporter is essential for plant growth	Nature Communications	2	322	2011	NRAMP1,_,FRO2,IRT2,_,_,YSL15,YSL2,IRT1	OsNramp1, OsNRAMP1, OsNramp6,,OsFRO2,OsIRT2, OsIRT1,OsVIT2, OsVIT1,MIT,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 ,OsIRT1
33157	21146515	Yamaki S., Nonomura K., Kurata N., Nagato Y.	Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.	Developmental biology	351(1)	208-16	2011		
33158	21683874	Kurata N., Thirumurugan T., Ohme-Takagi M., Hiratsu K., Serizawa A., Ito Y.	Aberrant vegetative and reproductive development by overexpression and lethality by silencing of OsHAP3E in rice	Plant Science	181	105-110	2011		
33159	21186175	Yokoyama K., Horiuchi Y., Abe R., Tsuchida H., Shimizu A., Fujii T., Watanabe M., Mochizuki T., Yamamoto N., Kikuchi S., Sano K., Hongo K., Kurata N., Fujita M., Hamada K., Suwabe K., Yano K., Oki N., Nagayama T., Matsuoka M.	OryzaExpress: An integrated database of gene expression networks and omics annotations in rice	Plant and Cell Physiology	52	220-229	2011		
33160	21309865	Kimura F., Hirakata K., Ito Y., Tsuda K., Kurata N., Takasugi T., Nakagawa K., Eiguchi M.	Fatty acid elongase is required for shoot development in rice	Plant Journal	66	680-688	2011		
33161	20400938	Dai C., Hong-Wei Xue	Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling.	The EMBO journal	29(11)	1916-27	2010	HD16	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1
33162	18173378	Yamaguchi S.	Gibberellin metabolism and its regulation.	Annual Review of Plant Biology	59	225-51	2008	SD1,KS1,D18,GA2OX6,GA20OX1,GA3OX1,GA2OX5,GA20OX3,GA2OX2,GA2OX3,GA20OX4,CPS1,GA2OX1,KAO,D35,EUI1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA2ox6,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsGA3ox1, GA3ox1, OsGA3OX1,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA20ox3, ga20ox3,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA20ox4, ga20ox4,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI
33163	12736788	Sakai M., Saito T., Kobayashi M., Tanaka H., Matsuoka M., Sakamoto T.	Expression of novel rice gibberellin 2-oxidase gene is under homeostatic regulation by biologically active gibberellins.	Journal of plant research	116(2)	161-4	2003	GA2OX1,GA2OX3	OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4
33164	15821147	Lee DJ, Zeevaart JA.	Molecular cloning of GA 2-oxidase3 from spinach and its ectopic expression in Nicotiana sylvestris.	Plant physiology	138(1)	243-54	2005	GA2OX5,GA2OX1,GA2OX6	OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox6
33165	18952778	Lo SF, Yang SY, Chen KT, Hsing YI, Zeevaart JA, Chen LJ, Yu SM.	A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice.	The Plant Cell	20(10)	2603-18	2008	GA2OX6,GA2OX9,GA2OX1,GA2OX7,GA2OX10,GA2OX5,GA2OX8	OsGA2ox6,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox7,OsGA2ox10,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox8
33166		Toyomatsu T Kawaide H Sekimoto H von Numers C Phillips AL et a	Cloning and characterization of a cDNA encoding gibberellin 20-oxidase from rice (Oryza sativa) seedlings.	Physiol. Plantarum.	99	111-18	1997	GA20OX1	OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1
33167	18718932	Hirano K., Aya K., Hobo T., Sakakibara H., Kojima M., Rosalyn Angeles Shim, Hasegawa Y., Miyako Ueguchi-Tanaka, Matsuoka M.	Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice.	Plant & cell physiology	49(10)	1429-50	2008	YUCCA2,YUCCA6,YUCCA3,SLRL2,YUCCA4,YUCCA5,YUCCA7,SLRL1,YUCCA1	OsYUCCA2, OsYUC2,OsYUCCA6, OsYUC6,OsYUCCA3, OsYUC3,OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,OsYUCCA4, OsYUC4, YUC4,OsYUCCA5, OsYUC5, YUC5,OsYUCCA7, OsYUC7,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsYUCCA1, OsYUC1
33168	20625906	Yu H., Wang M., Tang D., Wang K., Chen F., Gong Z., Gu M., Cheng Z.	OsSPO11-1 is essential for both homologous chromosome pairing and crossover formation in rice.	Chromosoma	119(6)	625-36	2010	ZEP1,TOP6A1	OsZEP1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1
33169	19417775	Chang L., Ma H., Hong-Wei Xue	Functional conservation of the meiotic genes SDS and RCK in male meiosis in the monocot rice.	Cell research	19(6)	768-82	2009	SDS,RMC1	OsSDS, Orysa;SDS,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
33170	19458115	Frank F White, Yang B.	Host and pathogen factors controlling the rice-Xanthomonas oryzae interaction.	Plant physiology	150(4)	1677-86	2009	XA13	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
33171	20699274	Li T., Huang S., Wen Zhi Jiang, Wright D., Martin H Spalding, Donald P Weeks, Yang B.	TAL nucleases (TALNs): hybrid proteins composed of TAL effectors and FokI DNA-cleavage domain.	Nucleic acids research	39(1)	359-72	2011	11N3	OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14
33172	16707243	Jain M., Akhilesh K Tyagi, Jitendra P Khurana	Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa).	Genomics	88(3)	360-71	2006	SAUR39,SAUR1,SAUR10,SAUR13,SAUR14,SAUR15,SAUR16,SAUR17,SAUR18,SAUR21,SAUR22,SAUR24,SAUR25,SAUR26,SAUR27,SAUR28,SAUR29,SAUR3,SAUR30,SAUR31,SAUR32,SAUR33,SAUR36,SAUR37,SAUR38,SAUR4,SAUR40,SAUR41,SAUR43,SAUR46,SAUR47,SAUR50,SAUR5,SAUR51,SAUR53,SAUR54,SAUR55,SAUR56,SAUR58,SAUR6,SAUR9,SAUR34,SAUR52,SAUR11,SAUR44,SAUR48,SAUR49,SAUR7,SAUR42,SAUR2,SAUR12,SAUR45,SAUR57,SAUR8,SAUR19,SAUR20,SAUR23,SAUR35	OsSAUR39,OsSAUR1,OsSAUR10,OsSAUR13,OsSAUR14,OsSAUR15,OsSAUR16,OsSAUR17,OsSAUR18,OsSAUR21,OsSAUR22,OsSAUR24,OsSAUR25,OsSAUR26,OsSAUR27,OsSAUR28,OsSAUR29,OsSAUR3,OsSAUR30,OsSAUR31,OsSAUR32,OsSAUR33,OsSAUR36,OsSAUR37,OsSAUR38,OsSAUR4,OsSAUR40,OsSAUR41,OsSAUR43,OsSAUR46,OsSAUR47,OsSAUR50,OsSAUR5,OsSAUR51,OsSAUR53,OsSAUR54,OsSAUR55,OsSAUR56,OsSAUR58,OsSAUR6,OsSAUR9,OsSAUR34,OsSAUR52,OsSAUR11,OsSAUR44,OsSAUR48,OsSAUR49,OsSAUR7,OsSAUR42,OsSAUR2,OsSAUR12,OsSAUR45,OsSAUR57,OsSAUR8,OsSAUR19,OsSAUR20,OsSAUR23,OsSAUR35
33173	19490115	Jain M., Jitendra P Khurana	Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice.	The FEBS journal	276(11)	3148-62	2009	SAUR12,SAUR3,SAUR5,SAUR10,SAUR15,SAUR18,SAUR22,SAUR24,SAUR28,SAUR33,SAUR38,SAUR2,SAUR41,SAUR53,SAUR54,SAUR55,SAUR56,SAUR58,SAUR20,SAUR57,SAUR30,SAUR29,SAUR21,SAUR31,SAUR19,SAUR39,SAUR25,SAUR34,SAUR11,SAUR48,SAUR49,SAUR9,SAUR42,SAUR51,SAUR23,SAUR8	OsSAUR12,OsSAUR3,OsSAUR5,OsSAUR10,OsSAUR15,OsSAUR18,OsSAUR22,OsSAUR24,OsSAUR28,OsSAUR33,OsSAUR38,OsSAUR2,OsSAUR41,OsSAUR53,OsSAUR54,OsSAUR55,OsSAUR56,OsSAUR58,OsSAUR20,OsSAUR57,OsSAUR30,OsSAUR29,OsSAUR21,OsSAUR31,OsSAUR19,OsSAUR39,OsSAUR25,OsSAUR34,OsSAUR11,OsSAUR48,OsSAUR49,OsSAUR9,OsSAUR42,OsSAUR51,OsSAUR23,OsSAUR8
33174	11904292	Min Chul Kim, Sang Hyoung Lee, Jong Kyong Kim, Hyun Jin Chun, Man Soo Choi, Woo Sik Chung, Byeong Cheol Moon, Chang Ho Kang, Chan Young Park, Jae Hyuk Yoo, Yun Hwan Kang, Seong Cheol Koo, Yoon Duck Koo, Jae Cheol Jung, Sun Tae Kim, Paul Schulze-Lefert, Sang Yeol Lee, Moo Je Cho	Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein. Isolation and characterization of a rice Mlo homologue.	The Journal of biological chemistry	277(22)	19304-14	2002		
33175	12437305	Elliott C., Zhou F., Spielmeyer W., Panstruga R., Paul Schulze-Lefert	Functional conservation of wheat and rice Mlo orthologs in defense modulation to the powdery mildew fungus.	Molecular plant-microbe interactions : MPMI	15(10)	1069-77	2002		
33176	15352871	Elliott C., Judith Muller, Miklis M., Riyaz A Bhat, Paul Schulze-Lefert, Panstruga R.	Conserved extracellular cysteine residues and cytoplasmic loop-loop interplay are required for functionality of the heptahelical MLO protein.	The Biochemical journal	385(Pt 1)	243-54	2005		
33177	21457711	He X., Hou X., Shen Y., Huang Z.	TaSRG, a wheat transcription factor, significantly affects salt tolerance in transgenic rice and Arabidopsis.	FEBS letters	585(8)	1231-7	2011		
33178	0	Asano,K., Takashi,T., Miura,K., Qian,Q., Kitano,H., Matsuoka,M. and Ashikari,M.	Genetic and molecular analysis of utility of sd1 alleles in rice breeding	Breed. Sci.	57	53-58	2007	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
33179	21771914	Eom,J.S., Cho,J.I., Reinders,A., Lee,S.W., Yoo,Y., Tuan,P.Q., Choi,S.B., Bang,G., Park,Y.I., Cho,M.H., Bhoo,S.H., An,G., Hahn,T.R., Ward,J.M. and Jeon,J.S.	Impaired Function of the Tonoplast-Localized Sucrose Transporter in Rice, OsSUT2, Limits the Transport of Vacuolar Reserve Sucrose and Affects Plant Growth	Plant Physiol.	157(1)	109-119	2011	SUT2	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
33180	0	Feng,J.X., Cao,L., Li,J., Duan,C.J., Luo,X.M., Le,N., Wei,H.H., Liang,S.J., Chu,C.C., Pan,Q.H. and Tang,J.L.	Involvement of OsNPR1/NH1 in rice basal resistance to blast fungus Magnaporthe oryzae	Eur. J. Plant Pathol.	131(2)	221-235	2011	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
33181	21981410	Kusumi,K., Sakata,C., Nakamura,T., Kawasaki,S., Yoshimura,A. and Iba,K.	A novel plastid protein NUS1 is essential for build-up of the genetic system for early chloroplast development under cold stress condition	Plant J.	68(6)	1039-50	2011	V1	v1, NUS1
33182	21896764	La,H., Ding,B., Mishra,G.P., Zhou,B., Yang,H., Bellizzi Mdel,R., Chen,S., Meyers,B.C., Peng,Z., Zhu,J.K. and Wang,G.L.	A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice	Proc. Natl. Acad. Sci. U.S.A.	108(37)	15498-15503	2011	_,_,TOS17	DNG701,DNG704,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
33183	21753115	Qi,W., Sun,F., Wang,Q., Chen,M., Huang,Y., Feng,Y.Q., Luo,X. and Yang,J.	Rice Ethylene-Response AP2/ERF Factor OsEATB Restricts Internode Elongation by Down-Regulating a Gibberellin Biosynthetic Gene	Plant Physiol.	157(1)	216-228	2011	ERF3,ERF72,ERF64,ERF71,ERF102,ERF91	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3
33184	21771866	Wang,C.W., Chen,W.C., Lin,L.J., Lee,C.T., Tseng,T.H. and Leu,W.M.	OIP30, a RuvB-Like DNA Helicase 2, is a Potential Substrate for the Pollen-Predominant OsCPK25/26 in Rice	Plant Cell Physiol.	52(9)	1641-1656	2011	CDPK25,CDPK26,CDPK2,_,CDPK1	OsCDPK25, OsCPK25,OsCDPK26, OsCPK26,OsCDPK2, OsCPK2,OIP30,OsCDPK1, OsCPK1
33185	21908441	Zhong,R., Lee,C., McCarthy,R.L., Reeves,C.K., Jones,E.G. and Ye,Z.H.	Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors	Plant Cell Physiol.			2011	_,NAC18,NAC82,NAC90,NAC31,NAC29,NAC56,_	OsMYB46,ONAC018, ONAC18, OsSWN4,OsSWN6, ONAC082, ONAC82,OsSWN7, ONAC090, ONAC90,ONAC031, ONAC31, OsSWN3,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2 ,ONAC056, ONAC56, OsSWN5,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1
33188	21626211	Hanada K., Hase T., Toyoda T., Shinozaki K., Okamoto M.	Origin and evolution of genes related to ABA metabolism and its signaling pathways	Journal of plant research	124	455-465	2011		
33189	21495624	Sturms R., Dispirito A.A., Hargrove M.S.	Plant and cyanobacterial hemoglobins reduce nitrite to nitric oxide under anoxic conditions	Biochemistry	50	3873-3878	2011		
33194	21478444	Rautengarten C., Ebert B., Herter T., Petzold C.J., Ishii T., Mukhopadhyay A., Usadel B., Scheller H.V.	The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis	Plant Cell	23	1373-1390	2011		
33196		Ni D., Zhang S., Chen S., Xu Y., Li L., Li H., Wang Z., Cai X., Li Z., Yang J.	Improving cooking and eating quality of Xieyou57, an elite indica hybrid rice, by marker-assisted selection of the Wx locus	Euphytica	179	355-362	2011		
33202	21317339	Hu B., Zhu C., Li F., Tang J., Wang Y., Lin A., Liu L., Che R., Chu C.	Leaf tip necrosis1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice	Plant physiology	156	1101-1105	2011	MIR399F,MIR399J,LTN1,PAP10,IRT1	OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPAP10,OsIRT1
33203	21540434	Gallavotti A., Malcomber S., Gaines C., Stanfield S., Whipple C., Kellogg E., Schmidta R.J.	BARREN STALK FASTIGIATE1 is an at-hook protein required for the formation of maize ears	Plant Cell	23	1756-1771	2011		
33206	21384112	Zhang Y.X., Wang Q., Jiang L., Liu L.L., Wang B.X., Shen Y.Y., Cheng X.N., Wan J.	Fine mapping of qSTV11KAS, a major QTL for rice stripe disease resistance	Theoretical and Applied Genetics	122	1591-1604	2011		
33207	21558309	Kobayashi Y., Motose H., Iwamoto K., Fukuda H.	Expression and genome-wide analysis of the xylogen-type gene family	Plant and Cell Physiology	52	1095-1106	2011		
33210		Rajpurohit D., Kumar R., Kumar M., Paul P., Awasthi A., Osman Basha P., Puri A., Jhang T., Singh K., Dhaliwal H.S.	Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection	Euphytica	178	111-126	2011	XA13,SK2(T)(SCL, FGR),SD1,XA21	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Xa21*, Xa21, OsXA21
33216	21516334	Lu S., Friesen T.L., Faris J.D.	Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.)	Molecular Genetics and Genomics	285	485-503	2011		
33218	21398647	Ye N., Zhu G., Liu Y., Li Y., Zhang J.	ABA controls H2O2 accumulation through the induction of OsCATB in rice leaves under water stress	Plant and Cell Physiology	52	689-698	2011		
33222	21502188	Ji X., Dong B., Shiran B., Talbot M.J., Edlington J.E., Hughes T., White R.G., Gubler F., Dolferus R.	Control of abscisic acid catabolism and abscisic acid homeostasis is important for reproductive stage stress tolerance in cereals	Plant physiology	156	550-563	2011		
33226		Ignacimuthu S., Raveendar S.	Agrobacterium mediated transformation of indica rice (Oryza sativa L.) for insect resistance	Euphytica	179	277-286	2011		
33231	21456578	Wulff R.P., Lundqvist J., Rutsdottir G., Hansson A., Stenbaek A., Elmlund D., Elmlund H., Jensen P.E., Hansson M.	The activity of barley NADPH-dependent thioredoxin reductase C is independent of the oligomeric state of the protein: Tetrameric structure determined by cryo-electron microscopy	Biochemistry	50	3713-3723	2011		
33235		MORITA Y., KYOZUKA J.	Identification of rice PIN homologs	RGN	21	87-88	2004	PIN6A,PIN6B,PIN1D,PIN1C,PIN1A,PIN1B,LRA1	OsPIN6A, OsPIN6a,OsPIN6B, OsPIN6b,OsPIN1D, OsPIN1d,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1
33236	12203890	Ganesh Kumar Agrawal, Rakwal R., Yonekura M., Kubo A., Saji H.	Proteome analysis of differentially displayed proteins as a tool for investigating ozone stress in rice (Oryza sativa L.) seedlings.	Proteomics	2(8)	947-59	2002	APX4,APX3,APX1,APX7,APX2,APX5,APX6,APX8	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8
33237	11181723	Y Sato, T Murakami, H Funatsuki, S Matsuba, H Saruyama, M Tanida	Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings.	Journal of Experimental Botany	52(354)	145-51	2001	APX4,APX3,APX6,APX1,APX8,APX2,APX7,APX5	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx5, OsAPx05, OSAPX5, APx5
33238	14644501	Ganesh Kumar Agrawal, Nam Soo Jwa, Iwahashi H., Rakwal R.	Importance of ascorbate peroxidases OsAPX1 and OsAPX2 in the rice pathogen response pathways and growth and reproduction revealed by their transcriptional profiling.	Gene	322	93-103	2003	APX8,APX3,APX7,APX6,APX4,APX2,APX5,APX1	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
33239	15832681	Yu-Chang Tsai, Chwan-Yang Hong, Li-Fei Liu, Ching Huei Kao	Expression of ascorbate peroxidase and glutathione reductase in roots of rice seedlings in response to NaCl and H2O2.	Journal of plant physiology	162(3)	291-9	2005	APX1,_	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2
33240	11855722	Dong A., Xin H., Yu Y., Sun C., Cao K., Wen-Hui Shen	The subcellular localization of an unusual rice calmodulin isoform, OsCaM61, depends on its prenylation status.	Plant Molecular Biology	48(3)	203-10	2002	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d
33241		Angeles-E-R, Khush-G-S	Genetic analysis of resistance to green leafhopper, Nephotettix virescens (Distant), in three varieties of rice	Plant Breeding	119	446-448	2000	GLH10,GLH11	glh10t, glh10(t), glh10,Glh11t, Glh11(t), Glh11 
33242		Barman,S.R., Gowda,M., Venu,R.C., Chattoo,B.B.	Identification of a major blast resistance gene in the rice cultivar 'Tetep'	Plant Breeding	123	300-302	2004	PITP	Pi-tp(t), Pitp(t), Pi-tp
33243		Tabien,R.E., Li-Z, Paterson,A.H., Marchetti,M.A., Stansel,J.W., Pinson,S.R.M.	Mapping of four major rice blast resistance genes from 'Lemont'and 'Teqing' and evaluation of their combinatorial effect for field resistance	Theoretical and Applied Genetics	101	1215-1225	2000	PIB,PILM2,PITQ6,PITQ5,PIQ1	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi-lm2, Pilm2, Pi lm2, Pib2,Pi-tq6, Pitq6,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1
33244	20404146	Beuchat J., Li S., Ragni L., Shindo C., Michael H Kohn, Christian S Hardtke	A hyperactive quantitative trait locus allele of Arabidopsis BRX contributes to natural variation in root growth vigor.	Proceedings of the National Academy of Sciences of the United States of America	107(18)	8475-80	2010	BRXL1,BRXL2,BRXL4,BRXL3,BRXL5.P	OsBRXL1,OsBRXL2,OsBRXL4,OsBRXL3,OsBRXL5.P, OsBRXL5
33245	16043430	Kamiya T., Akahori T., Maeshima M.	Expression profile of the genes for rice cation/H+ exchanger family and functional analysis in yeast.	Plant & cell physiology	46(10)	1735-40	2005	CAX1C,CAX1B,CAX3,CAX1A,CAX2	OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2
33246	12753582	Lee J., Das A., Yamaguchi M., Hashimoto J., Tsutsumi N., Uchimiya H., Umeda M.	Cell cycle function of a rice B2-type cyclin interacting with a B-type cyclin-dependent kinase.	The Plant journal : for cell and molecular biology	34(4)	417-25	2003	CDKB2;1 ,CYCB2;2,CYCA1;1,CYCB2;1	Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1
33247	11029700	M Yamaguchi, T Fabian, M Sauter, R P Bhalerao, J Schrader, G Sandberg, M Umeda, H Uchimiya	Activation of CDK-activating kinase is dependent on interaction with H-type cyclins in plants.	The Plant journal : for cell and molecular biology	24(1)	11-20	2000	CYCH;1,CDKD;1	Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,CDKD;1, Orysa;CDKD;1, R2, CAK R2, CDKD1;3 
33248		Yao S.G., Sonoda Y., Tsutsui T., Nakamura H., Ichikawa H., Ikeda A., Yamaguchi J.	Promoter analysis of OsAMt1 ; 2 and OsAMT1 ; 3 implies their distinct roles of nitrogen utilization in rice	Breeding Science	58	201-207	2008	AMT1;3	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
33249	12803618	Kumar A., N. Silim S., Okamoto M., Y. Siddiqi M., D. M. Glass A.	Differential expression of three members of the AMT1 gene family encoding putative high-affinity NH4+ transporters in roots of Oryza sativa subspecies indica.	Plant, cell & environment	26(6)	907-914	2003	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
33250	16028114	Md Monowar Karim Khan, Jan A., Karibe H., Komatsu S.	Identification of phosphoproteins regulated by gibberellin in rice leaf sheath.	Plant Molecular Biology	58(1)	27-40	2005	GAPC	OsGapC3, OGapC3, OsGAPDH1, GAPDH1
33251	16146529	Prasad K., Parameswaran S., Vijayraghavan U.	OsMADS1, a rice MADS-box factor, controls differentiation of specific cell types in the lemma and palea and is an early-acting regulator of inner floral organs.	The Plant journal : for cell and molecular biology	43(6)	915-28	2005	GH3-8,SPW1,MADS4,RAG,LHS1	OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,SPW1, spw1, MADS16, OsMADS16,OsMADS4, PI1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
33252	15629062	Zhang Y., Wang L.	The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.	BMC evolutionary biology	5	1	2005	WRKY53,WRKY77,WRKY89,WRKY24,WRKY109,WRKY80,WRKY29,WRKY88,WRKY15,WRKY94,WRKY18,WRKY27,WRKY31,WRKY32,WRKY34,WRKY40,WRKY35,WRKY107,WRKY52,WRKY104,WRKY110,WRKY106,WRKY4,WRKY55,WRKY69,WRKY5,WRKY75,WRKY63,WRKY117,WRKY118,WRKY58,WRKY37,WRKY43,WRKY71,WRKY114,WRKY21,WRKY74,WRKY116,WRKY111,WRKY65,WRKY9,WRKY45,WRKY6,WRKY16,WRKY68,WRKY79,WRKY84,WRKY20,WRKY95,WRKY54,WRKY82,WRKY66,WRKY113,WRKY108,WRKY72,WRKY105,WRKY115,WRKY22,WRKY67,WRKY7,WRKY51,WRKY23,WRKY17,WRKY57,WRKY39,WRKY14,WRKY112,WRKY2,WRKY64,WRKY11,WRKY28,WRKY60,WRKY96,WRKY19,WRKY48,WRKY30,WRKY49,WRKY3,WRKY76,WRKY90,WRKY10,WRKY70,WRKY8,WRKY25,WRKY61,WRKY1,WRKY73,WRKY13,WRKY50,WRKY87,WRKY42,WRKY12,WRKY46,WRKY62,WRKY26,WRKY102,WRKY47	OsWRKY53, WRKY-53,OsWRKY77, WRKY-77,OsWRKY89,OsWRKY24,OsWRKY109,OsWRKY80,OsWRKY29,OsWRKY88,OsWRKY15,OsWRKY94,OsWRKY18,OsWRKY27,OsWRKY31,OsWRKY32,OsWRKY34,OsWRKY40,OsWRKY35,OsWRKY107,OsWRKY52,OsWRKY104,OsWRKY110,OsWRKY106,OsWRKY4, WRKY122, OsWRKY122,OsWRKY55,OsWRKY69,OsWRKY5 ,OsWRKY75,OsWRKY63,OsWRKY117,OsWRKY118,OsWRKY58,OsWRKY37,OsWRKY43,OsWRKY71, WRKY-71,OsWRKY114,OsWRKY21,OsWRKY74,OsWRKY116,OsWRKY111,OsWRKY65,OsWRKY9,OsWRKY45,OsWRKY6, WRKY-6,OsWRKY16,OsWRKY68,OsWRKY79, WRKY-79,OsWRKY84,OsWRKY20,OsWRKY95,OsWRKY54,OsWRKY82,OsWRKY66,OsWRKY113,OsWRKY108,OsWRKY72, WRKY-72,OsWRKY105,OsWRKY115,OsWRKY22,OsWRKY67,OsWRKY7,OsWRKY51,OsWRKY23,OsWRKY17,OsWRKY57,OsWRKY39,OsWRKY14,OsWRKY112,OsWRKY2,OsWRKY64,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY28,OsWRKY60,OsWRKY96,OsWRKY19,OsWRKY48,OsWRKY30,OsWRKY49,OsWRKY3 ,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY90,OsWRKY10,OsWRKY70,OsWRKY8,OsWRKY25, OsWRKY44, WRKY44,OsWRKY61, OsWRKY103, WRKY103,OsWRKY1, OsWRKY1v2,OsWRKY73,OsWRKY13,OsWRKY50,OsWRKY87, OsSUSIBA2-like,OsWRKY42, WRKY-42,OsWRKY12,OsWRKY46, WRKY91, OsWRKY91,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY26, OsWRKY59,OsWRKY102,OsWRKY47
33253	16106749	Kun-Lu Wu, Ze-Jian Guo, Hai-Hua Wang, Li J.	The WRKY family of transcription factors in rice and Arabidopsis and their origins.	DNA research : an international journal for rapid publication of reports on genes and genomes	12(1)	9-26	2005	WRKY77,WRKY112,WRKY89,WRKY53,WRKY16,WRKY111,WRKY13,WRKY39,WRKY108,WRKY28,WRKY31,WRKY114,WRKY43,WRKY29,WRKY88,WRKY15,WRKY11,WRKY94,WRKY27,WRKY120,WRKY32,WRKY34,WRKY36,WRKY40,WRKY4,WRKY109,WRKY52,WRKY104,WRKY69,WRKY35,WRKY5,WRKY75,WRKY55,WRKY63,WRKY123,WRKY121,WRKY9,WRKY37,WRKY74,WRKY72,WRKY51,WRKY21,WRKY96,WRKY116,WRKY76,WRKY71,WRKY79,WRKY84,WRKY20,WRKY95,WRKY64,WRKY82,WRKY66,WRKY113,WRKY119,WRKY115,WRKY67,WRKY7,WRKY23,WRKY124,WRKY57,WRKY24,WRKY14,WRKY46,WRKY30,WRKY8,WRKY2,WRKY25,WRKY60,WRKY22,WRKY47,WRKY107,WRKY19,WRKY12,WRKY54,WRKY65,WRKY62,WRKY48,WRKY49,WRKY68,WRKY3,WRKY70,WRKY61,WRKY17,WRKY73,WRKY1,WRKY50,WRKY102,WRKY26,WRKY6,WRKY90,WRKY10,WRKY45,WRKY42,WRKY80,WRKY87,WRKY97	OsWRKY77, WRKY-77,OsWRKY112,OsWRKY89,OsWRKY53, WRKY-53,OsWRKY16,OsWRKY111,OsWRKY13,OsWRKY39,OsWRKY108,OsWRKY28,OsWRKY31,OsWRKY114,OsWRKY43,OsWRKY29,OsWRKY88,OsWRKY15,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY94,OsWRKY27,OsWRKY120,OsWRKY32,OsWRKY34,OsWRKY36,OsWRKY40,OsWRKY4, WRKY122, OsWRKY122,OsWRKY109,OsWRKY52,OsWRKY104,OsWRKY69,OsWRKY35,OsWRKY5 ,OsWRKY75,OsWRKY55,OsWRKY63,OsWRKY123,OsWRKY121,OsWRKY9,OsWRKY37,OsWRKY74,OsWRKY72, WRKY-72,OsWRKY51,OsWRKY21,OsWRKY96,OsWRKY116,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY71, WRKY-71,OsWRKY79, WRKY-79,OsWRKY84,OsWRKY20,OsWRKY95,OsWRKY64,OsWRKY82,OsWRKY66,OsWRKY113,OsWRKY119,OsWRKY115,OsWRKY67,OsWRKY7,OsWRKY23,OsWRKY124,OsWRKY57,OsWRKY24,OsWRKY14,OsWRKY46, WRKY91, OsWRKY91,OsWRKY30,OsWRKY8,OsWRKY2,OsWRKY25, OsWRKY44, WRKY44,OsWRKY60,OsWRKY22,OsWRKY47,OsWRKY107,OsWRKY19,OsWRKY12,OsWRKY54,OsWRKY65,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY48,OsWRKY49,OsWRKY68,OsWRKY3 ,OsWRKY70,OsWRKY61, OsWRKY103, WRKY103,OsWRKY17,OsWRKY73,OsWRKY1, OsWRKY1v2,OsWRKY50,OsWRKY102,OsWRKY26, OsWRKY59,OsWRKY6, WRKY-6,OsWRKY90,OsWRKY10,OsWRKY45,OsWRKY42, WRKY-42,OsWRKY80,OsWRKY87, OsSUSIBA2-like,OsWRKY97
33254		Christian A. Ross Yue Liu Qingxi J. Shen	The WRKY Gene Family in Rice (Oryza sativa)	Journal of integrative plant biology	49(6)	827-842	2007	WRKY1,WRKY64,WRKY6,WRKY23,WRKY14,WRKY42,WRKY13,WRKY80,WRKY29,WRKY31,WRKY5,WRKY94,WRKY70,WRKY88,WRKY43,WRKY35,WRKY12,WRKY15,WRKY51,WRKY58,WRKY27,WRKY32,WRKY34,WRKY36,WRKY37,WRKY40,WRKY48,WRKY107,WRKY4,WRKY52,WRKY104,WRKY55,WRKY28,WRKY69,WRKY90,WRKY75,WRKY77,WRKY123,WRKY53,WRKY62,WRKY121,WRKY71,WRKY19,WRKY72,WRKY114,WRKY74,WRKY17,WRKY8,WRKY116,WRKY2,WRKY21,WRKY111,WRKY41,WRKY65,WRKY25,WRKY39,WRKY68,WRKY79,WRKY102,WRKY84,WRKY22,WRKY20,WRKY47,WRKY87,WRKY95,WRKY82,WRKY54,WRKY96,WRKY66,WRKY45,WRKY113,WRKY108,WRKY81,WRKY109,WRKY115,WRKY9,WRKY67,WRKY61,WRKY7,WRKY24,WRKY89,WRKY10,WRKY57,WRKY46,WRKY30,WRKY60,WRKY49,WRKY3,WRKY76,WRKY11,WRKY112,WRKY124,WRKY16,WRKY73,WRKY50,WRKY26,WRKY125,WRKY97	OsWRKY1, OsWRKY1v2,OsWRKY64,OsWRKY6, WRKY-6,OsWRKY23,OsWRKY14,OsWRKY42, WRKY-42,OsWRKY13,OsWRKY80,OsWRKY29,OsWRKY31,OsWRKY5 ,OsWRKY94,OsWRKY70,OsWRKY88,OsWRKY43,OsWRKY35,OsWRKY12,OsWRKY15,OsWRKY51,OsWRKY58,OsWRKY27,OsWRKY32,OsWRKY34,OsWRKY36,OsWRKY37,OsWRKY40,OsWRKY48,OsWRKY107,OsWRKY4, WRKY122, OsWRKY122,OsWRKY52,OsWRKY104,OsWRKY55,OsWRKY28,OsWRKY69,OsWRKY90,OsWRKY75,OsWRKY77, WRKY-77,OsWRKY123,OsWRKY53, WRKY-53,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY121,OsWRKY71, WRKY-71,OsWRKY19,OsWRKY72, WRKY-72,OsWRKY114,OsWRKY74,OsWRKY17,OsWRKY8,OsWRKY116,OsWRKY2,OsWRKY21,OsWRKY111,OsWRKY41,OsWRKY65,OsWRKY25, OsWRKY44, WRKY44,OsWRKY39,OsWRKY68,OsWRKY79, WRKY-79,OsWRKY102,OsWRKY84,OsWRKY22,OsWRKY20,OsWRKY47,OsWRKY87, OsSUSIBA2-like,OsWRKY95,OsWRKY82,OsWRKY54,OsWRKY96,OsWRKY66,OsWRKY45,OsWRKY113,OsWRKY108,OsWRKY81, OsWRKY33,OsWRKY109,OsWRKY115,OsWRKY9,OsWRKY67,OsWRKY61, OsWRKY103, WRKY103,OsWRKY7,OsWRKY24,OsWRKY89,OsWRKY10,OsWRKY57,OsWRKY46, WRKY91, OsWRKY91,OsWRKY30,OsWRKY60,OsWRKY49,OsWRKY3 ,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY112,OsWRKY124,OsWRKY16,OsWRKY73,OsWRKY50,OsWRKY26, OsWRKY59,OsWRKY125,OsWRKY97
33255		Obara M., Takeda T., Hayakawa T., Yamaya T.	Mapping quantitative trait loci controlling root length in rice seedlings grown with low or sufficient NH+4 supply using backcross recombinant lines derived from a cross between Oryza sativa L. and Oryza glaberrima Steud	Soil Science and Plant Nutrition	57	80-92	2011	GLN1;1,GDH2,_,GLT1,AMT2;2,AMT2;3,GLN1;2,GLT2,AMT3;1,AMT2;1,GDH3,GDH1,AMT3;2,AMT3;3,ASN1,GOT1,AMT1;3,ASN,GS2,AMT1;2,ABC1,AMT1;1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGDH2,OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT2;3, AMT2;3, OsAMT2.3,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT2;1, AMT2-1, OsAMT2.1,OsGDH3,OsGDH1,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsASN1, OsAS1, AS1,Got1, Aat1, OsAAT, GOT-A,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsASN2, OsAS, OsAS2, AS2,OsGS2, GLN2, RGS31,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
33256	21322560	Chuang H.H., Chen P.T., Wang W.N., Chen Y.T., Shaw J.F.	Functional proteomic analysis of rice bran esterases/lipases and characterization of a novel recombinant esterase	Journal of agricultural and food chemistry	59	2019-2025	2011		
33258	21318489	Ouyang S.Q., He S.J., Liu P., Zhang W.K., Zhang J.S., Chen S.Y.	The role of tocopherol cyclase in salt stress tolerance of rice (Oryza sativa)	Science China Life Sciences	54	181-188	2011	_	OsVTE1
33259	21269485	Singh U., Deb D., Singh A., Grover A.	Glycine-rich RNA binding protein of Oryza sativa inhibits growth of M15 E. coli cells	BMC research notes	4	-	2011	_,_	OsGR-RBP4,OsFKBP20
33260	21528404	Mallikarjuna G., Mallikarjuna K., Reddy M.K., Kaul T.	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)	Biotechnology letters	33	1689-1697	2011	DREB2A,_	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,DREB2B
33261	21213008	Mustafiz A., Singh A.K., Pareek A., Sopory S.K., Singla-Pareek S.L.	Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses	Functional and Integrative Genomics	11	293-305	2011	GLYI2,GLYI9,GLYI1,GLYI4,GLYI3,GLYI5,GLYI7,GLYI6,GLYI-11,GLYI8,GLYI10,GLYII-2,GLYII-1,GLYII-3	OsGLYI2,OsGLYI9, OsGLYI9.1, OsGLYI9.2,OsGLYI1,OsGLYI4,OsGLYI3,OsGLYI5,OsGLYI7, OsGLYI7.1, OsGLYI7.2,OsGLYI6, OsGLYI6.1, OsGLYI6.2, OsGLYI6.3, OsGLYI6.4, OsGLYI6.5,OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33,OsGLYI8, OsGLYI-8, GLYI-8,OsGLYI10, OsEnS-113,OsGLYII2, GLYII2, OsGLYII-2,OsGLYII1, GLYII1, OsETHE1, ETHE1, OsGLYII-1,OsGLYII3, GLYII3, gly II, OsGLYII-3
33262		NegrBo S., Almadanim C., Pires I., McNally K.L., Oliveira M.M.	Use of EcoTILLING to identify natural allelic variants of rice candidate genes involved in salinity tolerance	Plant Genetic Resources: Characterisation and Utilisation	9	300-304	2011		
33263		Negi D.S., Kumar A., Sharma R.K., Shukla N., Negi N., Tamta M.L., Bansal Y., Prasert P.-g., Cairns J.R.K.	Structure confirmation of rare conjugate glycosides from Glycosmis arborea (Roxb.) with the action of -glucosidases	Research Journal of Phytochemistry	5	32-40	2011		
33264		Hu Y., Chang C., Xu G., Wang T.	Light restored root growth of Arabidopsis with constitutive ethylene response	Acta Physiologiae Plantarum	33	667-674	2011	ERF93	OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168
33265		Bihani P., Char B., Bhargava S.	Transgenic expression of sorghum DREB2 in rice improves tolerance and yield under water limitation	Journal of Agricultural Science	149	95-101	2011		
33266	21481190	Al Atalah B., Fouquaert E., Vanderschaeghe D., Proost P., Balzarini J., Smith D.F., RougH P., Lasanajak Y., Callewaert N., Van Damme E.J.M.	Expression analysis of the nucleocytoplasmic lectin 'Orysata' from rice in Pichia pastoris	FEBS Journal	278	2064-2079	2011		
33267	21494323	Qian D., Jiang L., Lu L., Wei C., Li Y.	Biochemical and structural properties of cyanases from Arabidopsis thaliana and Oryza sativa	PLoS One	6	-	2011	CYN	OsCYN
33268		Kakeda K., Ishihara N., Izumi Y., Sato K., Taketa S.	Expression and functional analysis of the barley Nud gene using transgenic rice	Breeding Science	61	35-42	2011	ERF3,ERF1	Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1
33269	21251109	Okuyama Y., Kanzaki H., Abe A., Yoshida K., Tamiru M., Saitoh H., Fujibe T., Matsumura H., Shenton M., Galam D.C., Undan J., Ito A., Sone T., Terauchi R.	A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes	Plant Journal	66	467-479	2011	_,_,_,_,_,_,_,_,_,_,_,_,_,PIA,_	Os11gRGA3,Os11gRGA4, RGA4,SasPKA1, PKA1,Os11gRGA1,Os11gRGA6,Os11gRGA2,Os11gRGA7,Os11gRGA8,Os11gRGA9,Os11gRGA10,Os11gRGA11,Os11gRGA12,Os11gRGAC,Pi a, Pia, Pi-a, Pia-1, Pia-2,Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5
33271	21670506	Oda K., Otani M., Uraguchi S., Akihiro T., Fujiwara T.	Rice ABCG43 is Cd inducible and confers Cd tolerance on yeast	Bioscience, Biotechnology and Biochemistry	75	1211-1213	2011	GCC7,PDR5,IRT2	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,OsIRT2, OsIRT1
33272	21558459	Yang R., Tang Q., Wang H., Zhang X., Pan G., Wang H., Tu J.	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development	Annals of botany	107	1087-1101	2011		
33273	21521631	Sansenya S., Opassiri R., Kuaprasert B., Chen C.J., Ketudat Cairns J.R.	The crystal structure of rice (Oryza sativa L.) Os4BGlu12, an oligosaccharide and tuberonic acid glucoside-hydrolyzing -glucosidase with significant thioglucohydrolase activity	Archives of biochemistry and biophysics	510	62-72	2011		
33274		Zhang F.T., Wang P.R., Sun C.H., Wang B., Li X.L., Zhu J.Q., Gao X.L., Deng X.J.	Fine mapping and candidate gene analysis of the dwarf gene d162(t) in rice (Oryza sativa L.)	Genes and Genomics	33	25-30	2011		
33275	21221128	Che L., Tang D., Wang K., Wang M., Zhu K., Yu H., Gu M., Cheng Z.	OsAM1 is required for leptotene-zygotene transition in rice	Cell research	21	654-665	2011		
33276	21205187	Shen P., Wang R., Jing W., Zhang W.	Rice Phospholipase D is Involved in Salt Tolerance by the Mediation of H+-ATPase Activity and Transcription	Journal of integrative plant biology	53	289-299	2011	PLDalpha5,PLDALPHA3,PLDbeta1,PLDalpha2,PLDalpha1,PLDalpha4,_,_,_	OsPLDalpha5, RPLD4, OsPLDeta3,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2,OsPLDbeta1,OsPLDalpha2,RPLD1, PLD1, OsPLDalpha1,OsPLDalpha4, RPLD3, OsPLDeta2,OsVHA-A,OSA1,OSA2
33277	21324151	Ruan S.L., Ma H.S., Wang S.H., Fu Y.P., Xin Y., Liu W.Z., Wang F., Tong J.X., Wang S.Z., Chen H.Z.	Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed	BMC Plant Biology	11	-	2011	CATC,_,SODCC2,SODB,APX7,SODA1,APX3,LRT2,APX1	OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,OsCatC, CatC, OsCAT,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
33278	21899054	Hu T.Z., He S., Huang X.Y., Deng L., Wang G.X.	Cloning, molecular characterization and heterologous expression of a glutathione S-transferase gene in rice	Russian Journal of Bioorganic Chemistry	37	344-350	2011	GSTL3,GSTL1,GSTL2	OsGSTL3,OsGSTL1,OsGSTL2
33279	21360613	Xiang H., Takeuchi H., Tsunoda Y., Nakajima M., Murata K., Ueguchi-Tanaka M., Kidokoro S.I., Kezuka Y., Nonaka T., Matsuoka M., Katoh E.	Thermodynamic characterization of OsGID1-gibberellin binding using calorimetry and docking simulations	Journal of Molecular Recognition	24	275-282	2011	GID1	gid1, OsGID1, Thl, Os GID1
33280	21595879	Campos-Soriano L., GRmez-Ariza J., Bonfante P., San Segundo B.	A rice calcium-dependent protein kinase is expressed in cortical root cells during the presymbiotic phase of the arbuscular mycorrhizal symbiosis	BMC Plant Biology	11	-	2011	CDPK18,CDPK4	OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,OsCDPK4, OsCPK4, CPK4, CDPK1
33281		Park S.H., Yun D.W., Lee G.S., Yoon, Ung-Han, Ji H.S., Ahn B.O., Park S.C., Kim Y.H., Kim Y.K., Kim C.K.	Molecular and genetic characterization of osh6 (Oryza sativa homeobox 6) using dissociation (Ds) insertion mutant rice	African Journal of Biotechnology	10	1802-1811	2011	OSH6,RPBF,OSH15	OsH6, HOS16,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3
33284		Chen X.F., Gu Z.M., Liu F., Ma B.J., Zhang H.S.	Molecular Analysis of Rice CIPKs Involved in Both Biotic and Abiotic Stress Responses	Rice Science	18	1-9	2011		
33285		Lee D.G., Park K.W., An J.Y., Sohn Y.G., Ha J.K., Kim H.Y., Bae D.W., Lee K.H., Kang N.J., Lee B.H., Kang K.Y., Lee J.J.	Proteomics analysis of salt-induced leaf proteins in two rice germplasms with different salt sensitivity [ProtHomique des protHines foliaires induites par le sel chez deux variHtHs de riz esensibilitHvariable au sel.]	Canadian Journal of Plant Science	91	337-349	2011		
33286		Zhou Y., Niu X., Liu Y.	Cloning and genetic transformation of rice OsGPCR gene	Chinese Journal of Applied and Environmental Biology	17	7-11	2011	_	OsGPCR
33287		Yin X.M., Rocha P.S.C.F., Wang M.L., Zhu Y.X., Li L.Y., Song S.F., Xia X.	Rice Gene OsDSR-1 Promotes Lateral Root Development in Arabidopsis Under High-Potassium Conditions	Journal of Plant Biology	54	180-189	2011	_	OsDSR-1, DSR-1
33289	20978084	Wang X.F., He F.F., Ma X.X., Mao C.Z., Hodgman C., Lu C.G., Wu P.	OsCAND1 is required for crown root emergence in rice	Molecular plant	4	289-299	2011		
33291		Wang B., Zhu C., Liu X., Wang W., Ding H., Jiang M., Li G., Liu W., Yao F.	Fine Mapping of qHD4-1, a QTL Controlling the Heading Date, to a 20.7-kb DNA Fragment in Rice (Oryza sativa L.)	Plant Molecular Biology Reporter	29	702-713	2011		
33292	21221698	Kumar S., Asif M.H., Chakrabarty D., Tripathi R.D., Trivedi P.K.	Differential expression and alternative splicing of rice sulphate transporter family members regulate sulphur status during plant growth, development and stress conditions	Functional and Integrative Genomics	11	259-273	2011	SULTR3;5,SULTR5;1,SULTR2;1,SULTR1;2,SULTR4;1,SULTR1;3,SULTR3;4,SULTR3;6,SULTR3;2,SULTR5;2,SULTR1;1,SULTR3;1,LPA,SULTR2;2	OsSultr3;5, OsSul3;5,OsSultr5;1, OsSul5;1,OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,OsSultr1;2, OsSul1;2,OsSultr4;1, OsSul4;1, OsSultr4;1(a), OsSultr4;1(b), OsSultr4;1(c), OsSultr4;1(d),OsSultr1;3, OsSul1;3,OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT,OsSultr3;6, OsSul3;6, OsSULTR3;6 ,OsSultr3;2, OsSul3;2,OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsSultr3;1, OsSul3;1,OsSultr3;3, OsSul3;3, SULTR3;3 ,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1
33293	21359958	Xu G.Y., Rocha P.S.C.F., Wang M.L., Xu M.L., Cui Y.C., Li L.Y., Zhu Y.X., Xia X.	A novel rice calmodulin-like gene, OsMSR2, enhances drought and salt tolerance and increases ABA sensitivity in Arabidopsis	Planta	234	47-59	2011	_,CML23,CML31,CML19,_,CALA	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,OsCML23,OsCML31, OsMSR2, MSR2,OsCML19,OsCaM3, OsCam3,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1
33294	21676173	Sun A., Dai Y., Zhang X., Li C., Meng K., Xu H., Wei X., Xiao G., Ouwerkerk P.B., Wang M., Zhu Z.	A Transgenic Study on Affecting Potato Tuber Yield by Expressing the Rice Sucrose Transporter Genes OsSUT5Z and OsSUT2M	Journal of integrative plant biology	53	586-595	2011	SUT5,SUT2	OsSUT5(t), OsSUT5Z, OsSUT5,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
33296		Redillas M.C.F.R., Strasser R.J., Jeong J.S., Kim Y.S., Kim J.K.	The use of JIP test to evaluate drought-tolerance of transgenic rice overexpressing OsNAC10	Plant Biotechnology Reports	5	169-175	2011	NAC122	OsNAC10, NAC10, ONAC122, NAC122
33297	21673515	Takanashi H., Ohnishi T., Mogi M., Hirata Y., Tsutsumi N.	DCL2 is highly expressed in the egg cell in both rice and Arabidopsis	Plant Signaling and Behavior	6	604-606	2011		
33298		Wang H., Makeen K., Yan Y., Cao Y., Sun S., Xu G.	OsSIZ1 Regulates the Vegetative Growth and Reproductive Development in Rice	Plant Molecular Biology Reporter	29	411-417	2011	SIZ1,SIZ2	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 ,OsSIZ2
33299	21760907	Li C., Huang L., Xu C., Zhao Y., Zhou D.X.	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice	PLoS One	6	-	2011		
33300		Zhang Y.X., Liu J.G., Chai T.Y., Jin L.	Advances in the uptake and translocation of silicon in plants	Progress in Biochemistry and Biophysics	38	400-407	2011	LSI1,LSI6,LSI2	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,Lsi2, SIET1, OsLsi2
33301		Peng X.X., Tang X.K., Zhou P.L., Hu Y.J., Deng X.B., He Y., Wang H.H.	Isolation and Expression Patterns of Rice WRKY82 Transcription Factor Gene Responsive to Both Biotic and Abiotic Stresses	Agricultural Sciences in China	10	893-901	2011		
33302	21220781	Feng H., Yan M., Fan X., Li B., Shen Q., Miller A.J., Xu G.	Spatial expression and regulation of rice high-affinity nitrate transporters by nitrogen and carbon status	Journal of Experimental Botany	62	2319-2332	2011		
33304	21178395	Kumar K., Rao K.P., Biswas D.K., Sinha A.K.	Rice WNK1 is regulated by abiotic stress and involved in internal circadian rhythm	Plant Signaling and Behavior	6	316-320	2011		
33306	21148627	Yan W.H., Wang P., Chen H.X., Zhou H.J., Li Q.P., Wang C.R., Ding Z.H., Zhang Y.S., Yu S.B., Xing Y.Z., Zhang Q.F.	A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice	Molecular plant	4	319-330	2011	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
33307	21296585	Gimeno-Gilles C., Gervais M.L., Planchet E., Satour P., Limami A.M., Lelievre E.	A stress-associated protein containing A20/AN1 zing-finger domains expressed in Medicago truncatula seeds	Plant Physiology and Biochemistry	49	303-310	2011		
33308		Bhatti K.H., Ahmed N.U.D., Shah A., Iqbal M., Iqbal T., Jiahe W.	Transgenic tobacco with rice zinc-finger gene OsLOL2 exhibits an enhanced resistance against bacterial-wilt	Australasian Plant Pathology	40	133-140	2011	_,LOL2,_	OsLSD1,OsLOL2, OsLSD5, OsLOL5, LOL5,OsLOL1, OsSTA289, OsLSD1
33309		Kanneganti V., Gupta A.K.	RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence	Physiology and Molecular Biology of Plants	17	65-77	2011	WAK1,WAK2,_	OsWAK1, WAK-1,OsWAK2,OsiWAK1, WAK1
33311	21451255	Lee S.K., Kim B.G., Kwon T.R., Jeong M.J., Park S.R., Lee J.W., Byun M.O., Kwon H.B., Matthews B.F., Hong C.B., Park S.C.	Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.)	Journal of biosciences	36	139-151	2011	_,_,_,_	OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, ,OsMAPK44,Oswjumk1,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAP3, MPK14, MPK3
33312		Liu Y., Xu J., Ding Y., Wang Q., Li G., Wang S.	Auxin inhibits the outgrowth of tiller buds in rice (Oryza sativa L.) by downregulating OsIPT expression and cytokinin biosynthesis in nodes	Australian Journal of Crop Science	5	169-174	2011		
33313	21127026	Ueno D., Koyama E., Yamaji N., Ma J.F.	Physiological, genetic, and molecular characterization of a high-Cd-accumulating rice cultivar, Jarjan	Journal of Experimental Botany	62	2265-2272	2011		
33314	21266036	Ricachenevsky F.K., Sperotto R.A., Menguer P.K., Sperb E.R., Lopes K.L., Fett J.P.	ZINC-INDUCED FACILITATOR-LIKE family in plants: Lineage-specific expansion in monocotyledons and conserved genomic and expression features among rice (Oryza sativa) paralogs	BMC Plant Biology	11	-	2011	TOM1,ZIFL1,ZIFL3,ZIFL6,ZIFL7,ZIFL8,ZIFL9,ZIFL12,ZIFL11,ZIFL13,ZIFL2,ZIFL10,ZIFL5,_	OsTOM1, ZIFL4, OsZIFL4 ,OsZIFL1,OsZIFL3,OsZIFL6,OsZIFL7,OsZIFL8,OsZIFL9,OsZIFL12,OsZIFL11,OsZIFL13,OsZIFL2, Os-mfs1, mfs1,OsZIFL10, Os-mfs2, mfs2,OsZIFL5, OsTOM2, TOM2,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
33315	15879704	Sang-Choon Lee, Mi-Yeon Lee, Soo-Jin Kim, Sung-Hoon Jun, An G., Seong-Ryong Kim	Characterization of an abiotic stress-inducible dehydrin gene, OsDhn1, in rice (Oryza sativa L.).	Molecules and cells	19(2)	212-8	2005	DHN1	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23
33316	16267395	Jun-Hye Shin, Dong-Hoon Jeong, Min Chul Park, An G.	Characterization and transcriptional expression of the alpha-expansin gene family in rice.	Mol. Cells	20(2)	210-8	2005	EXPA4,EXPA1,EXPA3,EXPA2,EXPA28,EXPA7,EXPA29	OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26,OsEXPA29
33317	15604683	Kende H., Bradford K., Brummell D., Hyung-Taeg Cho, Cosgrove D., Fleming A., Gehring C., Lee Y., Simon McQueen-Mason, Rose J., Laurentius A C J Voesenek	Nomenclature for members of the expansin superfamily of genes and proteins.	Plant Mol. Biol.	55(3)	311-4	2004	EXPA4,EXPA2,EXPA1,EXPA7	OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXPA7, EXP7, OsEXP7, OsaEXPa1.26
33318	21868603	Kubo T, Yoshimura A, Kurata N.	Hybrid male sterility in rice is due to epistatic interactions with a pollen killer locus.	Genetics.		1083-92.	2011	S24,EFS	S24(t), S24(t)*, Sb, F5-Du,
33319	21749035	Cao,Y., Wu,G., Wu,Y., Nie,S., Zhang,L. and Lu,C.	Characterization of the transgenic rice event TT51-1 and construction of a reference plasmid	J. Agric. Food Chem.	59(16)	8550-8559	2011		
33320	22077667	Gutjahr,C., Radovanovic,D., Geoffroy,J., Zhang,Q., Siegler,H., Chiapello,M., Casieri,L., An,K., An,G., Guiderdoni,E., Kumar Chellian,S., Sundaresan,V., Harrison,M.J. and Paszkowski,U.	The half-size ABC transporters STR1 and 2 are indispensable for mycorrhizal arbuscule formation in rice	Plant J.			2011	D10,D17,TRXH3,ABCG21,_	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,OsTRXh3, OsTrx26, antiSTR1,OsABCG21, STR1,STR2
33321	16541127	Liu,X.P., Liu,X.Y., Zhang,J., Xia,Z.L., Liu,X., Qin,H.J. and Wang,D.W.	Molecular and functional characterization of sulfiredoxin homologs from higher plants	Cell Res.	16(3)	287-296	2006	_	OsSrx
33322	22019783	Li,Y., Fan,C., Xing,Y., Jiang,Y., Luo,L., Sun,L., Shao,D., Xu,C., Li,X., Xiao,J., He,Y. and Zhang,Q.	Natural variation in GS5 plays an important role in regulating grain size and yield in rice	Nat. Genet.	43(12)	1266-1269	2011	qSW5,GS5	GW5, OsGW5,OsSCP26, SCP26, OsGS5
33323	22080596	Peng,J., Yu,J., Wang,H., Guo,Y., Li,G., Bai,G. and Chen,R.	Regulation of Compound Leaf Development in Medicago truncatula by Fused Compound Leaf1, a Class M KNOX Gene	Plant Cell			2011	_,_	FCL1,FCL2
33324	20082138	Peremarti,A., Bassie,L., Zhu,C., Christou,P. and Capell,T.	Molecular characterization of the Arginine decarboxylase gene family in rice	Transgenic Res.	19(5)	785-797	2010	ADC2,ADC1	ADCa, OsAdc2, OsADC2,OsADC1, ARGDC, ADC, OsAdc1
33325	21854475	Reagon,M., Thurber,C.S., Olsen,K.M., Jia,Y. and Caicedo,A.L.	The long and the short of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice	Mol. Ecol.			2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
33326	21969384	Sasaki,A., Yamaji,N., Xia,J. and Ma,J.F.	OsYSL6 Is Involved in the Detoxification of Excess Manganese in Rice	Plant Physiol.	157(4)	1832-1840	2011	YSL6	OsYSL6, OsYs8 
33327	21963665	Tabuchi,H., Zhang,Y., Hattori,S., Omae,M., Shimizu-Sato,S., Oikawa,T., Qian,Q., Nishimura,M., Kitano,H., Xie,H., Fang,X., Yoshida,H., Kyozuka,J., Chen,F. and Sato,Y.	LAX PANICLE2 of Rice Encodes a Novel Nuclear Protein and Regulates the Formation of Axillary Meristems	Plant Cell	23(9)	3276-3287	2011	LAX2,MOC1,LAX1	OsLAX2, Gnp4/LAX2, Gnp4,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
33328	21615687	Wei,R.X. and Ge,S.	Evolutionary history and complementary selective relaxation of the duplicated PI genes in grasses	J Integr Plant Biol	53(8)	682-693	2011	MADS4,MADS2	OsMADS4, PI1,OsMADS2, RMADS219, NMADS1, PI2, nmads1 
33329	19015668	Weng,J., Gu,S., Wan,X., Gao,H., Guo,T., Su,N., Lei,C., Zhang,X., Cheng,Z., Guo,X., Wang,J., Jiang,L., Zhai,H. and Wan,J.	Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight	Cell Res.	18(12)	1199-1209	2008	qSW5	GW5, OsGW5
33330	0	Yau,C.P., Zhuang,C.X., Zee,S.Y. and Yip,W.K.	Expression of a microsporocyte-specific gene encoding dihydroflavonol 4-reductase-like protein is developmentally regulated during early microsporogenesis in rice	Sex. Plant Reprod.	18(2)	65-74	2005	RD,_,_,CCR20,_,_,_,_,_,ALDH3E1,_,NP1 ,_,WDA1,_	Rd, DFR, OsDFR, OS-DFR,OS-DFR3,OS-CAD,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OS-QR,OS-NUC,OS-RP2,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,OS-PYDK, Ospdhk, PDHK, Ospdhk2, pdhk2 OsHRK1, HRK1,OS-ALDH, OsALDH3E1,OsSub42, SUB42, OsSP2, OS-MSP ,OS-ACE, OsNP1 ,OsTKPR1, OsDFR2, OS-DFR2, OsDFR2A,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OS-RNAH, OsRH29
33331	0	Yu,J. and Ao,G.	Isolation and sequencing of a sulfur-rich 10 kDa prolamin gene from rice seeds	Nong Ye Sheng Wu Ji Shu Xue Bao	1(1)	38-42	1993		
33332	22085497	Zhang,H., Cao,Y., Zhao,J., Li,X., Xiao,J. and Wang,S.	A pair of orthologs of a leucine-rich repeat receptor kinase-like disease resistance gene family regulates rice response to raised temperature	BMC Plant Biol.	11	160	2011	TRKE	TRKe, Rke, NRKe, 9RKe 
33333	21726399	Shimono M., Koga H., Akagi A., Hayashi N., Goto S., Sawada M., Kurihara T., Matsushita A., Sugano S., Jiang C.J., Kaku H., Inoue H., Takatsuji H.	Rice WRKY45 plays important roles in fungal and bacterial disease resistance.	Mol. Plant Pathol.	13(1)	83-94	2012	WRKY45	OsWRKY45
33334	22500165	Ichitani K., Takemoto Y., Iiyama K., Taura S., Sato M.	Chromosomal Location of HCA1 and HCA2, Hybrid Chlorosis Genes in Rice	Int J Plant Genomics			2012	HCA2,HCA1	hca2,hca1
33335	22209874	Nakagawa H., Tanaka A., Tanabata T., Ohtake M., Fujioka S., Nakamura H., Ichikawa H., Mori M.	SHORT GRAIN 1 Decreases Organ Elongation and Brassinosteroid Response in Rice.	Plant Physiol.			2011	SG1,_,_	OsSG1, Sg1,SGL1,
33336		Hu T, Qv X, Xiao G ,Haung X	Enhanced tolerance to herbicide of rice plants by over-expression of a glutathione S-transferance	Mol Breeding	24	409-418	2009	GSTL1	OsGSTL1
33337	19640724	Yang X, Sun W, Liu JP, Liu YJ, Zeng QY.	Biochemical and physiological characterization of a tau class glutathione transferase from rice (Oryza sativa).	Plant Physiol Biochem.	47(11-12)	1061-8.	2009	GSTU17	OsGSTU17, OsGST23, GST23 
33338		Jingrui Wu, Carole L. Cramer, Kriton K. Hatzios	Characterization of two cDNAs encoding glutathione S-transferases in rice and induction of their transcripts by the herbicide safener fenclorim	Physiologia Plantarum	105(1)	02-108	1999	GSTF1,GSTF2	OsGSTF1, RGSI,OsGSTF2, RGSTII
33339		J. Rebouillat & A. Dievart & J. L. Verdeil & J. Escoute &G. Giese & J. C. Breitler & P. Gantet & S. Espeout &E. Guiderdoni & C. Perin	Molecular Genetics of Rice Root Development	Rice (N Y)	2	15-34	2009		
33340		Chhun T, Takeda S, Tsurumi S, Ichii M.	The effects of auxin on lateral root initiation and root gravitropism in a lateral rootless@mutant Lrt1 of rice (Oryza sativa L.).	Plant Growth Regul	39	61-70.	2003		
33341	14623941	Chhun T, Takeda S, Tsurumi S, Ichii M.	Interaction between two auxin-resistant mutants and their ffects on lateral root formation in rice (Oryza sativa L.).	J Exp Bot	54	2701-8.	2003		
33342		Debi RB, Mushika J, Takeda S, Miyao A, Hirochika H, Ichii M.	Isolation and characterization of a short lateral root utant in rice(Oryza sativa L.).	Plant Sci	165	895-903.	2003		
33343		Suzuki N, Takeda S, Ichii M.	Morphological and physiological characteristics of a root-hairless mutant in rice (Oryza sativa L.).	Plant Soil	255	9-17.	2003		
33345		Gaufichon L., Michele Reisdorf-Cren, Steven J. Rothstein, Chardon F., Suzuki A.	Biological functions of asparagine synthetase in plants.	Plant Science	179	141-153	2010	ASN1,ASN	OsASN1, OsAS1, AS1,OsASN2, OsAS, OsAS2, AS2
33346	10965944	Nakano K., Suzuki T., Hayakawa T., Yamaya T.	Organ and Cellular Localization of Asparagine Synthetase in Rice Plants.	Plant Cell Physiol.	41(7)	874	2000	ASN	OsASN2, OsAS, OsAS2, AS2
33347	21171885	Huang H., Huang L., Feng G., Wang S., Wang Y., Liu J., Jiang N., Yan W., Xu L., Sun P., Li Z., Pan S., Liu X., Xiao Y., Liu E., Dai L., Wang G.L.	Molecular mapping of the new blast resistance genes Pi47 and Pi48 in the durably resistant local rice cultivar Xiangzi 3150.	Phytopathology	101(5)	620-6	2011	PI48,PI47,PIZY,PI43,PI1,PIZ	Pi48, Pi48(t),Pi47, Pi47(t),Pi-zy, Pi-zy(t),Pi43, Pi43(t), Pi-43(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33348	22128137	Bentolila,S. and Stefanov,S.	A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes	Plant Physiol.	158(2)	996-1017	2012	_,_,RPS19,_,26S  rRNA,_,_,_,_,_,5S  rRNA,_,_,_,_,_,_,RPS7,_,_,_,_,_,_,_,_,_,_,RPS13,NAD4L,_,_,_,_,_,_,_,_,_,_,_,_,NAD2,_,_,_,_,_,_,_,_,_,_,_,NAD5,_,_,_,NAD6,_,_,_,RPS1,_,_,NAD9,RPL2,_,RPS4,_,_,_,RPL16,NAD3,RPS12,_,RPS2,_,_,GSLm,_,_,_,NAD7,_,RPS3,NAD4,NAD1,_,_	orf86d,orf173c,rps19,orf164,rrn26,orf221,ccmC, orf240,orf187, orf187-2,orf160b,orf313,rrn5,rrn18,trnI(CAT), trnI,trnD(GTC), trnD,trnN(GTT), trnN,trnK(TTT), trnK,orf25, atp4,rps7,orf490,trnM(CAT), trnM,orf161b,orf389,orf165b,trnH(GTG), trnH,trnP(TGG), trnP,trnW(CCA), trnW,orf153,rpl5, rpl5-1,rps13,nad4L,orf356,orf347,atp1, atp1-1, ATP1,coxI, COX1, cox1-1, cox1,orf579,orf1054,ccmFn, ccmFn-1,orf154,orf160,orf165, orf165-1,mat-r, mat-r-1,trnY(GTA), trnY,nad2,orf152a, orf152b,trnfM(CAT), trnfM,orf162, orf162-1,nad3,trnQ,orf161c,trnV.p, pseudo-trnV, trnV,orfX,trnE(TTC), trnE,trnS(GGA), trnS,trnF(GAA), trnF,nad5,orf258, orf317,orfB, atp8 ,orf181,nad6,orf183,cox2, coxII,orf152b, orf152b-1, orf152,rps1, rps1a, rps1b, rps1-1,orf284, orf284-1,orf173, orf173-1, orf173b,nad9, nad9-1, CI-27kD, CI-27KD,rpl2,orf161,rps4,trnS(TGA), trnS,trnC(GCA), trnC,trnR(TCT), trnR,rpl16, pseudo-rpl16,nad3,rps12,orf224, orf224a, orf224b,rps2, orf483 ,orf176, orf173 ,ccmFc, ccmFc-1,orf241, OsGSLm, OsGSLmt, GSLmt,ccmB,orf160, orf160b ,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,nad7,cob, cob-1, cob-like,rps3,nad4, nadIV,nad1, nadI, nadIB,atp9, RMtATP9, aatp9,orf126
33349	21621742	Chen,J., Shi,Y., Liu,W., Chai,R., Fu,Y., Zhuang,J. and Wu,J.	A Pid3 allele from rice cultivar Gumei2 confers resistance to Magnaporthe oryzae	J Genet Genomics	38(5)	209-216	2011	PID3	Pi-d3, Pid3, Pi25
33350	0	Fan,L., Gui,Y., Zheng,Y., Wang,Y., Cai,D. and You,X.	Ancient DNA sequences of rice from the Low Yangtze reveal significant genotypic divergence	Chin. Sci. Bull.			2012	KRP4	OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6
33351	21954164	Gu,X.Y., Foley,M.E., Horvath,D.P., Anderson,J.V., Feng,J., Zhang,L., Mowry,C.R., Ye,H., Suttle,J.C., Kadowaki,K.I. and Chen,Z.	Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice	Genetics	189(4)	1515-1524	2011	RC	Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
33352	22151303	Jiang,Y., Bao,L., Jeong,S.Y., Kim,S.K., Xu,C., Li,X. and Zhang,Q.	XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice	Plant J.			2011	MADS47,CYCB1;1, LIC,BU1,MCM3,_,CYCB2;1,KRP1	OsMADS47, OsMDP1, MDP, MDP1,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm,OsC3H46, C3H46, OsLIC,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsMCM3,XIAO,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1 
33353	21813465	Kwantes,M., Liebsch,D. and Verelst,W.	How MIKC* MADS-Box Genes Originated and Evidence for Their Conserved Function Throughout the Evolution of Vascular Plant Gametophytes	Mol. Biol. Evol.			2011	MADS68,MADS62,MADS63	OsMADS68,OsMADS62,OsMADS63
33354	22209962	Ling,L.Z.	Sequence variations and selection analysis of microRNA target genes involved in rice flower development	Gene			2011		
33355	0	Ramkumar,G., Biswal,A.K., Mohan,K.M., Sakthivel,K., Sivaranjani,A.K.P., Neeraja,C.N., Ram,T., Balachandran,S.M., Sundaram,R.M., Prasad,M.S., Rani,N.S., Viraktamath,B.C. and Madhav,M.S.	Identification of novel alleles of rice blast resistance genes Pik h and Pita through allele mining	Int Rice Res Notes	35	1-6	2010	PIKH,PITA	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33356	21807436	Tang,Y., Li,M., Chen,Y., Wu,P., Wu,G. and Jiang,H.	Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice	J. Plant Physiol.	168(16)	1952-1959	2011	_,RCCR1,RCCR3,RCCR2	OsPAO, PAO,OsRCCR1, OsRCCR, RCCR,OsRCCR3,OsRCCR2, OsRCCR1, RCCR1
33357	0	Wu,G., Wu,Y., Nie,S., Zhang,L., Xiao,L., Cao,Y. and Lu,C.	Real-time PCR method for detection of the transgenic rice event TT51-1	Food Chem	119(1)	417-422	2010		
33358	22188563	Ye,J.W., Gong,Z.Y., Chen,C.G., Mi,H.L. and Chen,G.Y.	A Mutation of OSOTP 51 Leads to Impairment of PSI Complex Assembly and Serious Photo-damage in Rice	J Integr Plant Biol			2011	_,_	ORF170, ycf3, IRF170,OSOTP 51, OSOTP51, OTP51
33359	21880027	Yokosho,K., Yamaji,N. and Ma,J.F.	An Al-inducible MATE gene is involved in external detoxification of Al in rice	Plant J.	68(6)	1061-1069	2011	ART1,_	ART1, STAR3,OsFRDL4, FRDL4, MATE
33360	0	H.I. Oka	Report of study-tour to India for collection of rice, 1957				1957		
33361	0	H.I. Oka	Report of study-tour to Thailand for investigation of rice (1958)				1958		
33362	0	Tadao C. Katayama	Report on the rice collection trip to the Philippines and New Guinea (1961)				1961		
33363	0	H.I. Oka	Report of trip for investigation of rice in Latin American countries (1961)				1961		
33364	0	H.I. Oka, W.T. Chang	Joint report of collection trip to Mindanao, Philippines (1963)				1963		
33365	0	T. Tateoka, Juan V.  Pancho	Report on exploration for wild species of Oryza in the Philippines (1963)				1963		
33366	0	H.I. Oka, W.T. Chang	Observations of wild and cultivated rice species in Africa  --Report of trip from Sierra Leone to Tchad, 1963--				1963		
33367	0	Tadao C. Katayama	Report on the rice collection trip to Borneo and Java (1963)				1963		
33368	0	T. Tateoka	Report of explorations in East Africa and Madagascar (1964)				1964		
33369	0	H.I. Oka, H. Morishima, Y. Sano, T. Koizumi	Observation of rice species and accompanying savanna plants on the southern fringe of Sahara desert. Report of study-tour in West Africa, 1977				1977		
33370	0	H.I. Oka	An observation of wild rice species in Tropical Australia.  Report of trip, 1978				1978		
33371	0	H. Morishima, Y. Sano, H.I. Oka	Observations on wild and cultivated rices and companion weeds in the hilly areas of Nepal, India and Thailand.  Report of study-tour in Tropical Asia, 1979				1979		
33372	0	H. Morishima, Y. Shimamoto, Y. Sano, Y.I. Sato	Observations on wild and cultivated rices in Thailand for ecological-genetic study  --Report of study-tour in 1983--				1983		
33373	0	G. Second, A. Ghesquiere	Collection and observation of wild rice (Oryza) species in Western India.  Report of survey from October 1st to 28th, 1984				1984		
33374	0	H. Morishima, Y. Shimamoto, Y. Sano, Y.I. Sato	Trip to Indonesia and Thailand for the ecological genetic study in rice          --Report of study-tour in 1985/86--				1985/86		
33375	0	H. Morishima, Y. Shimamoto, T. Sato, H. Yamagishi, Y.I. Sato	Observations of wild and cultivated rices in Bhutan, Bangladesh and Thailand  --Report of study-tour in 1989/90--				1989/90		
33376	0	H. Morishima, Paulo S. Martins	Investigations of plant genetic resources in the Amazon basin with the emphasis on the genus Oryza --Report of 1992/93 Amazon Project--				1992/93		
33377	0	Y.I. Sato, K. Ando, S. Chitrakon, H. Morishima, T. Sato, Y. Shimamoto, H. Yamagishi,	Ecological-genetic studies on wild and cultivated rice in Tropical Asia (1994)				1994		
33381	0	Oka & Chang	Evolution		418-430	15	1961		
33384	0	Akihama and Watabe	The Alteration of Cultivated Rice in Thailand and Cambodia	Tonan Ajia Kenkyu (The southeast Studies)	8	337-346	1970		
33385	0		Ann. Rep. NIG 24 : 66-67,				1974		
33386	0		Ann. Rep. NIG 27 : 102-103,				1977		
33387	0		Ann. Rep. NIG 27 : 97 (Oka) & 101-102 (Sano),29 : 97-98 (Sano)				1977,1979		
33388	0		Can. J. Genet. Cytol. 10 : 527-535				1968		
33389	0	Akihama T., Toshimitsu K	Geographical distribution of morphological variation on wild rices in central and southern India.	Preliminary report Tottori University s Scientific Survey	Vol. 1 	48-59	1972		
33390	0	Hiko-Ichi Oka		Jpn. J. Genet. 	28 : 227-232 ,29 : 18-25, 53-67, 101-108 ,205-214		1953,1954		
33391	0	Hiko-Ichi Oka	Studies on Tetraploid Rice Rice VI. Fertility variation and segregation ratios for several characters in tetraploid hybrids of rice, Oryza saliva, L.	Cytologia	20	258-266	1955		
33392	0	G. Second	Field notes on a collection of wild rice species in Australia, May 1987.				1987		
33393	0	A. Borgel  et G. Second	Prospection des varietes traditionnelles et des especes sauvages de riz au Tchad et Cameroun. 1977.				1977		
33394	0	K. Miezan et G. Second	Prospection des varietes traditionnelles et des especes sauvages de riz en Tanzanie, 1979.				1979		
33395	24764503	Rice WRKY Working Group	Nomenclature report on rice WRKYs. -Conflict regarding gene names and its solution	Rice (N Y)	5	3	2012	WRKY75,WRKY67,WRKY113,WRKY77,WRKY60,WRKY16,WRKY78,WRKY108,WRKY39,WRKY110,WRKY120,WRKY104,WRKY24,WRKY23,WRKY105,WRKY13,WRKY29,WRKY83,WRKY42,WRKY111,WRKY109,WRKY114,WRKY64,WRKY115,WRKY35,WRKY117,WRKY53,WRKY7,WRKY118,WRKY68,WRKY41,WRKY9,WRKY70,WRKY74,WRKY112,WRKY124,WRKY19,WRKY106,WRKY79,WRKY43,WRKY84,WRKY1,WRKY10,WRKY81,WRKY62,WRKY119,WRKY69,WRKY3,WRKY8,WRKY71,WRKY5,WRKY88,WRKY94,WRKY22,WRKY2,WRKY73,WRKY12,WRKY33,WRKY55,WRKY38,WRKY21,WRKY15,WRKY97,WRKY102,WRKY56,WRKY61,WRKY51,WRKY20,WRKY82,WRKY125,WRKY47,WRKY11,WRKY80,WRKY45,WRKY63,WRKY27,WRKY18,WRKY85,WRKY96,WRKY86,WRKY46,WRKY28,WRKY32,WRKY4,WRKY34,WRKY36,WRKY123,WRKY37,WRKY40,WRKY99,WRKY89,WRKY30,WRKY50,WRKY121,WRKY6,WRKY95,WRKY65,WRKY116,WRKY26,WRKY14,WRKY58,WRKY48,WRKY17,WRKY49,WRKY25,WRKY90,WRKY52,WRKY72,WRKY87,WRKY57,WRKY31,WRKY107,WRKY54,WRKY66,WRKY76,WRKY98	OsWRKY75,OsWRKY67,OsWRKY113,OsWRKY77, WRKY-77,OsWRKY60,OsWRKY16,OsWRKY78,OsWRKY108,OsWRKY39,OsWRKY110,OsWRKY120,OsWRKY104,OsWRKY24,OsWRKY23,OsWRKY105,OsWRKY13,OsWRKY29,OsWRKY83,OsWRKY42, WRKY-42,OsWRKY111,OsWRKY109,OsWRKY114,OsWRKY64,OsWRKY115,OsWRKY35,OsWRKY117,OsWRKY53, WRKY-53,OsWRKY7,OsWRKY118,OsWRKY68,OsWRKY41,OsWRKY9,OsWRKY70,OsWRKY74,OsWRKY112,OsWRKY124,OsWRKY19,OsWRKY106,OsWRKY79, WRKY-79,OsWRKY43,OsWRKY84,OsWRKY1, OsWRKY1v2,OsWRKY10,OsWRKY81, OsWRKY33,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY119,OsWRKY69,OsWRKY3 ,OsWRKY8,OsWRKY71, WRKY-71,OsWRKY5 ,OsWRKY88,OsWRKY94,OsWRKY22,OsWRKY2,OsWRKY73,OsWRKY12,OsWRKY33,OsWRKY55,OsWRKY38,OsWRKY21,OsWRKY15,OsWRKY97,OsWRKY102,OsWRKY56,OsWRKY61, OsWRKY103, WRKY103,OsWRKY51,OsWRKY20,OsWRKY82,OsWRKY125,OsWRKY47,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY80,OsWRKY45,OsWRKY63,OsWRKY27,OsWRKY18,OsWRKY85,OsWRKY96,OsWRKY86, OsaLeg5, Leg5,OsWRKY46, WRKY91, OsWRKY91,OsWRKY28,OsWRKY32,OsWRKY4, WRKY122, OsWRKY122,OsWRKY34,OsWRKY36,OsWRKY123,OsWRKY37,OsWRKY40,OsWRKY99,OsWRKY89,OsWRKY30,OsWRKY50,OsWRKY121,OsWRKY6, WRKY-6,OsWRKY95,OsWRKY65,OsWRKY116,OsWRKY26, OsWRKY59,OsWRKY14,OsWRKY58,OsWRKY48,OsWRKY17,OsWRKY49,OsWRKY25, OsWRKY44, WRKY44,OsWRKY90,OsWRKY52,OsWRKY72, WRKY-72,OsWRKY87, OsSUSIBA2-like,OsWRKY57,OsWRKY31,OsWRKY107,OsWRKY54,OsWRKY66,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY98
33396	20955181	Luan W., Liu Y., Zhang F., Song Y., Wang Z., Peng Y., Sun Z.	OsCD1 encodes a putative member of the cellulose synthase-like D sub-family and is essential for rice plant architecture and growth	Plant Biotechnol. J.	9	513-524	2011		
33398	21249367	Li W., Zhou F., Liu B., Feng D., He Y., Qi K., Wang H., Wang J.	Comparative characterization, expression pattern and function analysis of the 12-oxo-phytodienoic acid reductase gene family in rice	Plant Cell Rep.	30	981-995	2011		
33399	21625436	Yang Q., He H., Li H., Tian H., Zhang J., Zhai L., Chen J., Wu H., Yi G., He Z.H., Peng X.	NOA1 functions in a temperature-dependent manner to regulate chlorophyll biosynthesis and rubisco formation in rice	PLoS ONE	6(5)	e20015	2011		
33400	21309868	Yu Z., Kang B., He X., Lv S., Bai Y., Ding W., Chen M., Cho H.T., Wu P.	Root hair-specific expansins modulate root hair elongation in rice	Plant Journal	66	725-734	2011		
33401	21497713	Bae H., Kim S.K., Cho S.K., Kang B.G., Kim W.T.	Overexpression of OsRDCP1, a rice RING domain-containing E3 ubiquitin ligase, increased tolerance to drought stress in rice (Oryza sativa L.)	Plant Science	180	775-782	2011		
33403	21153026	Hu T., He S., Yang G., Zeng H., Wang G., Chen Z., Huang X.	Isolation and characterization of a rice glutathione S-transferase gene promoter regulated by herbicides and hormones	Plant Cell Rep.	30	539-549	2011		
33404	21332845	Seo J.S., Joo J., Kim M.J., Kim Y.K., Nahm B.H., Song S.I., Cheong J.J., Lee J.S., Kim J.K., Choi Y.D.	OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice	Plant Journal	65	907-921	2011		
33405	21255162	Kusano M., Tabuchi M., Fukushima A., Funayama K., Diaz C., Kobayashi M., Hayashi N., Tsuchiya Y.N., Takahashi H., Kamata A., Yamaya T., Saito K.	Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice	Plant Journal	66	456-466	2011		
33406	21796433	Ono Y., Kim D.W., Watanabe K., Sasaki A., Niitsu M., Berberich T., Kusano T., Takahashi Y.	Constitutively and highly expressed Oryza sativa polyamine oxidases localize in peroxisomes and catalyze polyamine back conversion.	Amino Acids	42(2-3)	867-76	2012	PAO5,PAOA,PAO1,PAO3,PAOB,PAO7,PAO4	OsPAO5, OsAO2, AO2,PAOa, OsPAO2, PAO2, OsPAOa,OsPAO1, OsAO4, AO4,OsPAO3, OsAO3, AO3,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsPAO7, OsPAO3, PAO3,OsPAO4, OsAO1, AO1
33408	21737944	Okada K.	The biosynthesis of isoprenoids and the mechanisms regulating it in plants.	Biosci. Biotechnol. Biochem.	75(7)	1219-25	2011	CYP76M6,CYP71Z6,_,BZIP37,CYP76M8,CYP76M5,DXS3,CYP71Z7,CYP76M7	CYP76M6,Oscyp71Z6,OsMASL,OsTGAP1, TGAP1, OsbZIP37,CYP76M8,CYP76M5,OsDXS, OsDXS3, dxs3,Oscyp71Z7,OsCYP76M7, CYP76M10, OsCYP76M10
33409	21805151	Zhang Y., Xiao W., Luo L., Pang J., Rong W., He C.	Downregulation of ospk1, a cytosolic Pyruvate kinase, by T-DNA insertion causes dwarfism and panicle enclosure in rice.	Planta	235(1)	25-38	2012	_,_,_,_,_,ALAAT,NADP-ME1	ALT-2,PEPC-1, Osppc1, ppc1,PEPC-2, Osppc4, ppc4,PEPCK, OsPEPCK,OsPK1, PK1,alaAT, ALT-1, OsAlaAT1, AlaAT1,NADP-ME, ME6, OschlME, XcrMal1
33410	21807632	Li P., Xue H.	Structural characterization and expression pattern analysis of the rice PLT gene family.	Acta Biochim. Biophys. Sin. (Shanghai)	43(9)	688-97	2011	PLT8,PLT9,PLT10,PLT7,PLT1,PLT3,PLT2,PLT5,PLT4,PLT6	OsPLT8, CRL5, AP2/EREBP141, AP2/EREBP#141 ,OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT,OsPLT10, AP2/EREBP26, AP2/EREBP#026 ,OsPLT7, AP2/EREBP#088, AP2/EREBP88,OsPLT1, AP2/EREBP#044, AP2/EREBP44,OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1
33411	21821426	Guretzki S., Papenbrock J.	Characterization of the sulfurtransferase family from Oryza sativa L.	Plant Physiol. Biochem.	49(9)	1064-70	2011	STR1,STR3,STR4,STR10,STR13,STR14,STR15,STR17,STR18,STR22,STR23,STR7,ACR2.2,STR5,STR11,STR6,STR8,STR2,STR9,STR16,STR24,STR12,STR19,ACR2.1	OsStr1,OsStr3,OsStr4,OsStr10,OsStr13,OsStr14,OsStr15,OsStr17,OsStr18,OsStr22,OsStr23,OsStr7,CDC25.2, OsACR2.2, OsStr21, STR21,OsStr5, OsHAC1;1, HAC1;1 ,OsStr11, OsCAS, Cas,OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2,OsStr8, OsHAC4, HAC4 ,OsStr2,OsStr9,OsStr16,OsStr24,OsStr12, Str12, TROL, Os-TROL, OsTROL,OsStr19, OsPP126,CDC25.1, OsACR2.1, OsStr20, STR20
33412	21760907	Li C., Huang L., Xu C., Zhao Y., Zhou D.X.	Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice.	PLoS ONE	6(7)	e21789	2011	HDT2,GHD7,RFT1,EF1,GI,HDT1,SE1,HD3A	OsHDT2,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsGI, Gi, Os-GI,OsHDT1, HDT701,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
33413	21796369	Mulangi V., Phuntumart V., Aouida M., Ramotar D., Morris P.	Functional analysis of OsPUT1, a rice polyamine uptake transporter.	Planta	235(1)	1-11	2012	PUT1	OsPUT1, PUT, OsLAT1 
33414	21777365	Chen Y., Fan X., Song W., Zhang Y., Xu G.	Over-expression of OsPIN2 leads to increased tiller numbers, angle and shorter plant height through suppression of OsLazy1.	Plant Biotechnol. J.	10(2)	139-49	2012	SPK,LAZY1,LRA1,PIN1C	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,lazy1, LA1, OsLazy1,OsPIN2, PIN2, OsLRA1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c
33415	21734114	Higuchi-Takeuchi M., Ichikawa T., Kondou Y., Matsui K., Hasegawa Y., Kawashima M., Sonoike K., Mori M., Hirochika H., Matsui M.	Functional analysis of two isoforms of leaf-type Ferredoxin-NADP(+)-oxidoreductase in rice using the heterologous expression system of Arabidopsis.	Plant Physiol.	157(1)	96-108	2011	ELL,CAB1R,_,_,PSAE,PSBO,_,_,PSBR,PSBP,PSBX,_,_,_,_,PSB28,PSBY,PSAL,_,PSAD,_,_,_,PSAG,PSAK,PSBS2,PSAF,_,_,PSAH,PSAN,_,C3H38  ,_,_,CAB2R,PSBW,_	chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,OsLhca3, Lhca3,lhcA,PsaE, OsPsaE,PsbO, psbO,OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1,,PsbR, OsPsbR1, PsbR1 ,PsbP, OsPsbP, psbP,PsbX,Lhcb1.1 OsLhcb1.1, lhcB,CP24, Lhcb6,CP29, OsCP29, LHCB4, Lhcb4 ,chlH,Psb28,PsbY,PsaL,,PsaD, OsPsaD,ASCAB9-A, CP26, Lhcb5,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,,PsaG,PsaK,PsbS, OsPsbS2,Usaf, OsPS1-F, PS1-F,,Fd1, OsFd1, ADI1,PsaH, GOS5,PsaN,,OsC3H38, U2AF35B, OsU2AF35b,OsNR1, NR1, nia1, OsNIA1, NIA1,OsLFNR1, LFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,PsbW,OsNIA2, NIA2, OsNR2, NR2
33416	21804028	Kasajima I., Ebana K., Yamamoto T., Takahara K., Yano M., Kawai-Yamada M., Uchimiya H.	Molecular distinction in genetic regulation of nonphotochemical quenching in rice.	Proc. Natl. Acad. Sci. U.S.A.	108(33)	13835-40	2011	PSBS2,PSBS1	PsbS, OsPsbS2,OsPsbS1, PsbS1, psbS
33417	21756975	Kang C.H., Moon B.C., Park H.C., Koo S.C., Jeon J.M., Cheong Y.H., Chung W.S., Lim C.O., Kim J.Y., Yoon B.D., Lee S.Y., Kim C.Y.	Rice OsERG3 encodes an unusual small C2-domain protein containing a Ca(2+)-binding module but lacking phospholipid-binding properties.	Biochim. Biophys. Acta	1810(12)	1317-22	2011	RPP16,RPP17	Rpp16(t), ERG3, OsERG3,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b
33418	21804566	Taoka K., Ohki I., Tsuji H., Furuita K., Hayashi K., Yanase T., Yamaguchi M., Nakashima C., Purwestri Y.A., Tamaki S., Ogaki Y., Shimada C., Nakagawa A., Kojima C., Shimamoto K.	14-3-3 proteins act as intracellular receptors for rice Hd3a florigen.	Nature	476(7360)	332-5	2011	_,BZIP77,_,GF14D,GF14G,GF14A,GF14F,GF14C,GF14H,HD3A,GF14B,RAP1A	OsBIP116b,OsbZIP77, OsFD1, FD1,OsKANADI1, OsKANADI2, KANADI1, KANADI2,GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14g, OsGF14g, 14-3-3g,GF14a, OsGF14a, WIN2, 14-3-3a,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14c, OsGF14c, 14-3-3c,GF14h, OsGF14h, 14-3-3h,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,GF14b, OsGF14b, 14-3-3b,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
33419	21631533	Bonifacio A., Martins M.O., Ribeiro C.W., Fontenele A.V., Carvalho F.E., Margis-Pinheiro M., Silveira J.A.	Role of peroxidases in the compensation of cytosolic ascorbate peroxidase knockdown in rice plants under abiotic stress.	Plant Cell Environ.	34(10)	1705-22	2011	APX3,APX7,APX4,GPX3,APX8,PHGPX,APX2,GPX5,GPX4,APX1	OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsGpx3, GPX3, OsGPx03,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsGpx5, GPX5, OsGPx05,OsGpx4, GPX4, OsGPx04, OsGPX4,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
33420	21753117	Chen J., Liu Y., Ni J., Wang Y., Bai Y., Shi J., Gan J., Wu Z., Wu P.	OsPHF1 regulates the plasma membrane localization of low- and high-affinity inorganic phosphate transporters and determines inorganic phosphate uptake and translocation in rice.	Plant Physiol.	157(1)	269-78	2011	PHF1,_,PT8,PT2,IPS1,PHR2,PHF1L	OsPHF1, OsWD40-137, OsSEC12,OsSQD2, SQD2, SQD2.2, OsSQD2.2,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsIPS1, IPS1,OsPHR2, Os-PHR2,OsPHF1L, OsWD40-94 
33421	21795261	Xia K., Liu T., Ouyang J., Wang R., Fan T., Zhang M.	Genome-wide identification, classification, and expression analysis of autophagy-associated gene homologues in rice (Oryza sativa L.).	DNA Res.	18(5)	363-77	2011	ATG7,OSK3,OSK4,ATG18F,ATG1A,ATG6A,ATG6B,ATG6C,ATG8I,ATG9A,ATG9B,ATG13A,ATG13B,ATG16,ATG18E,ATG8D,ATG10A,ATG10B,ATG5,ATG8,ATG4A,ATG8E,ATG8C,ATG3B,ATG3A,ATG8B,ATG18B,ATG18C,ATG4,ATG18D,ATG12,ATG18A,ATG8F	OsATG7, Atg7,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35 ,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b,OsATG18f, OsWD40-118 ,OsATG1a,OsATG6a,OsATG6b, OsATG6c,OsATG6c, OsATG6b,OsATG8i,OsATG9a,OsATG9b,OsATG13a,OsATG13b,OsATG16,OsATG18e, OsWD40-27 ,OsATG8d, Atg8e,OsATG10a, Atg10a,OsATG10b, Atg10b,OsATG5, Atg5,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,OsATG4a, Atg4a,OsATG8e, OsATG8d, Atg8d,OsATG8c,OsATG3b, Atg3b,OsATG3a, Atg3a,OsATG8b, Atg8b,OsATG18b, OsWD40-3 ,OsATG18c, OsWD40-30 ,Atg4, OsAtg4, APG4, Atg4b, OsATG4b ,OsATG18d, OsWD40-114 ,OsATG12, Atg12,OsATG18a, OsWD40-56 ,OsATG8f
33422	18980645	Kondou Y., Higuchi M., Takahashi S., Sakurai T., Ichikawa T., Kuroda H., Yoshizumi T., Tsumoto Y., Horii Y., Kawashima M., Hasegawa Y., Kuriyama T., Matsui K., Kusano M., Albinsky D., Takahashi H., Nakamura Y., Suzuki M., Sakakibara H., Kojima M., Akiyama K., Kurotani A., Seki M., Fujita M., Enju A., Yokotani N., Saitou T., Ashidate K., Fujimoto N., Ishikawa Y., Mori Y., Nanba R., Takata K., Uno K., Sugano S., Natsuki J., Joseph Gogo Dubouzet, Maeda S., Ohtake M., Mori M., Oda K., Takatsuji H., Hirochika H., Matsui M.	Systematic approaches to using the FOX hunting system to identify useful rice genes.	Plant J.	57(5)	883-94	2009		
33423	19762423	Komiya R., Yokoi S., Shimamoto K.	A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice.	Development	136(20)	3443-50	2009	RAP1B,PHYB,GHD7,HD3A,MADS50,SE1,RAP1A,RFT1	MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,phyB, PHYB1, OsPHYB, OsphyB,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
33424	21853042	Ahmad A., Dong Y., Cao X.	Characterization of the PRMT gene family in rice reveals conservation of arginine methylation.	PLoS ONE	6(8)	e22664	2011	PRMT3,PRMT5,PRMT6A,PRMT6B,PRMT10,PRMT7,PRMT1,PRMT4	OsPRMT3,OsPRMT5,OsPRMT6a,OsPRMT6b,OsPRMT710,OsPRMT7,OsPRMT1,OsPRMT4
33425	21830109	Wang P., Zhou G., Yu H., Yu S.	Fine mapping a major QTL for flag leaf size and yield-related traits in rice.	Theor. Appl. Genet.	123(8)	1319-30	2011	FTL1	FTL, FT-L1, OsFTL1, FTL1
33426	21883553	Asano T., Hayashi N., Kobayashi M., Aoki N., Miyao A., Mitsuhara I., Ichikawa H., Komatsu S., Hirochika H., Kikuchi S., Ohsugi R.	A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance.	Plant J.	69	26-36	2012	RBOHI,CDPK12,APX8,SALT,APX2	OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF,OsCDPK12, OsCPK12, CPK12,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
33427	21729241	Mittal D., Enoki Y., Lavania D., Singh A., Sakurai H., Grover A.	Binding affinities and interactions among different heat shock element types and heat shock factors in rice (Oryza sativa L.).	FEBS J.	278(17)	3076-85	2011	HSFA1,HSFB2A,HSFA2D,HSFA2E,HSFA2B,HSFA4A,HSFA5,HSFB1,HSFB2B,HSFB2C,HSFB4D,HSFA2C,HSFA7,HSFA9,HSFB4A,HSFC1A,HSFC1B,HSFC2A,HSFC2B,HSF26,HSFA3,HSFA6,HSFA2A,HSFB4B,SPL7	OsHsfA1, HSFA1, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b ,HSfA2e, OsHsfA2e, OsHsf-12, HSF12, OsHsfA2a, HsfA2a,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, HSF5, OsHSF5,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, HSF9, OsHsfA4b, OsHSF9,HSfA5, OsHsfA5, OsHsf-06, HSF06,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1 ,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsHsfB4d, HSfB4d, OsHsf-10, HSF10,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, HSF6, OsHsfA6a, HsfA6a ,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsEnS-9, OsHsfA7a, HsfA7a ,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, HSF8, OsHsfA8, HsfA8 ,HSfB4a, OsHsfB4a, OsHsf-20, HSF20,HSfC1a, OsHsfC1a, OsHsf-02, rHsf13, HSF02, HSF13,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, HSF11,  rHsf11,HSfC2a, OsHsfC2a, OsHsf-05, HSF05,HSfC2b, OsHsfC2b, OsHsf-16, HSF16,OsHsf26,HSfA3, OsHsfA3, OsHsf-07, HSF07,HSfA6, OsHsfA6, OsHsf-17, HSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,HSFB4b, OsHSFB4b, OsHsf-19, rHsf12, OsHSF12, HSF12, HSF19,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1
33428	21831212	Lu J., Ju H., Zhou G., Zhu C., Erb M., Wang X., Wang P., Lou Y.	An EAR-motif-containing ERF transcription factor affects herbivore-induced signaling, defense and resistance in rice.	Plant J.	68(4)	583-96	2011	ERF3,_	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
33429	21807887	Gui J., Shen J., Li L.	Functional characterization of evolutionarily divergent 4-coumarate:coenzyme a ligases in rice.	Plant Physiol.	157(2)	574-86	2011	4CL3,4CL1,4CL4,4CL5,4CL2	Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Os4CL1, 4-CL, 4-CL. 1,Os4CL4,Os4CL5, 4CL3, Os4CL3,Os4CL2
33430	21824632	Konishi T., Aohara T., Igasaki T., Hayashi N., Miyazaki Y., Takahashi A., Hirochika H., Iwai H., Satoh S., Ishii T.	Down-regulation of UDP-arabinopyranose mutase reduces the proportion of arabinofuranose present in rice cell walls.	Phytochemistry	72(16)	1962-8	2011	UAM1,UAM2,UAM3	OsUAM1, RGP-1, Osgls1,OsUAM2,OsUAM3
33431	21736653	Jun N., Gaohang W., Zhenxing Z., Huanhuan Z., Yunrong W., Ping W.	Osiaa23-mediated auxin signaling defines postembryonic maintenance of QC in rice.	Plant J.	68(3)	433-42	2011	IAA29,IAA28,IAA26,IAA25,IAA27,IAA30,IAA23,IAA20,CRL1	OsIAA29, OsEnS-141,OsIAA28,OsIAA26,OsIAA25,OsIAA27,OsIAA30,OsIAA23,OsIAA20,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
33432	21822061	Song X., Zhang B., Zhou Y.	Golgi-localized UDP-glucose transporter is required for cell wall integrity in rice.	Plant Signal Behav	6(8)	1097-100	2011	BC14	BC14, OsNST1
33433	21136294	Tian Y., Zhang H., Pan X., Chen X., Zhang Z., Lu X., Huang R.	Overexpression of ethylene response factor TERF2 confers cold tolerance in rice seedlings.	Transgenic Res.	20(4)	857-66	2011	FER1,CDPK13,TRXH,_,SODCC2,_,_	OsFER1, OsFer1 ,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116 ,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6
33434	21943343	Wang W., Liu Z., Guo Z., Song G., Cheng Q., Jiang D., Zhu Y., Yang D.	Comparative transcriptomes profiling of photoperiod-sensitive male sterile rice Nongken 58S during the male sterility transition between short-day and long-day.	BMC Genomics	12	462	2011	_,_,GI,SE1,HD2,TOC1,CCA1	OsDof, OsDof2, Dof2, OsDof-2,EPR1, OsEPR1,OsGI, Gi, Os-GI,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1
33435	21955397	Wang N., Xiao B., Xiong L.	Identification of a cluster of PR4-like genes involved in stress responses in rice.	J. Plant Physiol.	168(18)	2212-24	2011	PR4D,PR4E,PR4C,PR4,PR4B	OsPR4d,OsPR4e,OsPR4c,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR4b, OsPR-4b
33436	21897044	Kihara A., Saburi W., Wakuta S., Kim M.H., Hamada S., Ito H., Imai R., Matsui H.	Physiological and biochemical characterization of three Nucleoside diphosphate kinase isozymes from rice (Oryza sativa L.).	Biosci. Biotechnol. Biochem.	75(9)	1740-5	2011	NDPK3,_,YSS2	OsNDPK3,OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1,OsNDPK2, NDPK2, BIP114
33437	22102032	Kuaprasert B., Silprasit K., Horata N., Khunrae P., Wongpanya R., Boonyalai N., Vanavichit A., Choowongkomon K.	Purification, crystallization and preliminary X-ray analysis of recombinant betaine aldehyde dehydrogenase 2 (OsBADH2), a protein involved in jasmine aroma, from Thai fragrant rice (Oryza sativa L.).	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	67(Pt 10)	1221-3	2011	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
33438	21914651	Zhu Z.X., Liu Y., Liu S.J., Mao C.Z., Wu Y.R., Wu P.	A Gain-of-Function Mutation in OsIAA11 Affects lateral root Development in Rice.	Mol Plant	5(1)	154-61	2011	PIN10A,IAA31,IAA11,IAA12,PIN1B	PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsIAA3, OsIAA31,OsIAA11,OsIAA12,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
33439	21679014	Yu Y., Streubel J., Balzergue S., Champion A., Boch J., Koebnik R., Feng J., Verdier V., Szurek B.	Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that induces the rice nodulin-3 Os11N3 gene.	Mol. Plant Microbe Interact.	24(9)	1102-13	2011	11N3	OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14
33440	21908855	Chinpongpanich A., Wutipraditkul N., Thairat S., Buaboocha T.	Biophysical characterization of calmodulin and calmodulin-like proteins from rice, Oryza sativa L.	Acta Biochim. Biophys. Sin. (Shanghai)	43(11)	867-76	2011	_,CML5,CML8,CML9,CML11,CML13,CML4,CALA,CML3,_,CAM61	OsCaM3, OsCam3,OsCML5,OsCML8,OsCML9,OsCML11,OsCML13,OsCML4,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,CaM61, OsCaM61, OsCML1, OsCML1d
33441	21928114	Zhu L., Hu J., Zhu K., Fang Y., Gao Z., He Y., Zhang G., Guo L., Zeng D., Dong G., Yan M., Liu J., Qian Q.	Identification and characterization of SHORTENED UPPERMOST INTERNODE 1, a gene negatively regulating uppermost internode elongation in rice.	Plant Mol. Biol.	77(4-5)	475-87	2011	SUI1	OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1
33442	21927949	Su'udi M., Cha J.Y., Jung M.H., Ermawati N., Han C.D., Kim M.G., Woo Y.M., Son D.	Potential role of the rice OsCCS52A gene in endoreduplication.	Planta	235(2)	387-97	2012	CDC16,TAD1	OsCDC16,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 
33443	21954461	Wu R., Li S., He S., Wassmann F., Yu C., Qin G., Schreiber L., Qu L.J., Gu H.	cfl1, a WW domain protein, regulates cuticle development by modulating the function of HDG1, a class IV homeodomain transcription factor, in rice and Arabidopsis.	Plant Cell	23(9)	3392-411	2011	_	CFL1
33444	21966459	Wan L., Zhang J., Zhang H., Zhang Z., Quan R., Zhou S., Huang R.	Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice.	PLoS ONE	6(9)	e25216	2011	ERF51,ERF84,ERF96,ERF77,ERF11,ERF86,ERF104,ERF28,ERF12,ERF101,ERF3,ERF103,ERF124,ERF106	OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156,OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2 ,OsAP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111
33445	21965541	Xuan Y.H., Piao H.L., Je B.I., Park S.J., Park S.H., Huang J., Zhang J.B., Peterson T., Han C.D.	Transposon Ac/Ds-induced chromosomal rearrangements at the rice OsRLG5 locus.	Nucleic Acids Res.	39(22)	e149	2011	_	OsRLG5
33446	21834856	Chang J.C., Liao Y.C., Yang C.C., Wang A.Y.	The purine-rich DNA-binding protein OsPuralpha participates in the regulation of the rice sucrose synthase 1 gene expression.	Physiol Plant	143(3)	219-34	2011	_,RSUS1	OsPuraplha,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2
33447	21912859	Hirano K., Aya K., Kondo M., Okuno A., Morinaka Y., Matsuoka M.	OsCAD2 is the major CAD gene responsible for monolignol biosynthesis in rice culm.	Plant Cell Rep.	31(1)	91-101	2012	NOMT,COMTL1,COMTL6,COMTL4,CAD4,COMTL5,CAD1,CAD3,CAD5,CAD8A,CAD8B,CAD8D,CAD9,COMTL2,CAD8C,CAD6,FC1,GH2,ROMT9	OsNOMT, COMTL3, OsCOMTL3,OsCOMTL1,OsCOMTL6,OsCOMTL4, COMT2 ,OsCAD4,OsCOMTL5,OsCAD1,OsCAD3,OsCAD5,OsCAD8A,OsCAD8B,OsCAD8D,OsCAD9,OsCOMTL2,OsCAD8C, CAD8c,OsCAD6,OsCAD7, fc1, CAD7,gh2, CAD2, CAD, OsCAD2, GH2 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT
33448	21941532	Shinozuka H., Cogan N.O., Spangenberg G.C., Forster J.W.	Comparative Genomics in Perennial Ryegrass (Lolium perenne L.): Identification and Characterisation of an Orthologue for the Rice Plant Architecture-Controlling Gene OsABCG5.	Int J Plant Genomics	2011	291563	2011	ABCG3,ABCG6,ABCG5	OsABCG3,OsABCG6,OsABCG5
33449	21892614	Yuan L., Yang S., Liu B., Zhang M., Wu K.	Molecular characterization of a rice metal tolerance protein, OsMTP1.	Plant Cell Rep.	31(1)	67-79	2012	MTP1	OsMTP1
33450	20838584	Mahmoud W Yaish, Ashraf El-Kereamy, Zhu T., Perrin H Beatty, Allen G Good, Yong-Mei Bi, Steven J Rothstein	The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice.	PLoS Genet.	6(9)	e1001098	2010	NCED1,ABA1,ERF77,EUI1,NCED3	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsAP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2
33451	21961694	Zhang Y., Su J., Duan S., Ao Y., Dai J., Liu J., Wang P., Li Y., Liu B., Feng D., Wang J., Wang H.	A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.	Plant Methods	7(1)	30	2011	CAB2R,TRXM2,CAB1R,_,TRXM5,_,_,_,_	cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsTRX m2, TRX m2, OsTRXM2,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,GADPH, OsGAPDHB, GAPDHB,OsTRX m5, Ostrxm5, OsTRXM5,OsGLK1, OsGlk1,RbcS, RbcS4, OsRBCS4, OsRbcS4,OsRpl6-2,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
33452	21976713	Zhang J.W., Xu L., Wu Y.R., Chen X.A., Liu Y., Zhu S.H., Ding W.N., Wu P., Yi K.K.	OsGLU3, a Putative Membrane-Bound endo-1,4-beta-glucanase, Is Required for Root Cell Elongation and Division in Rice (Oryza sativa L.).	Mol Plant	5(1)	176-86	2012	_	OsGLU3, OsGH9A2, GLU3, GH9A2
33454	21972902	Deng M., Bian H., Xie Y., Kim Y., Wang W., Lin E., Zeng Z., Guo F., Pan J., Han N., Wang J., Qian Q., Zhu M.	Bcl-2 suppresses hydrogen peroxide-induced programmed cell death via OsVPE2 and OsVPE3, but not via OsVPE1 and OsVPE4, in rice.	FEBS J.	278(24)	4797-810	2011	GLUP3,_,_,_	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,OsVPE2, VPE2, OsaLeg1, aLeg1,OsVPE3, VPE3, REP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,OsVPE4, VPE4, OsaLeg4, Leg4
33455	22038138	Yoo J.H., Park J.H., Cho S.H., Yoo S.C., Li J., Zhang H., Kim K.S., Koh H.J., Paek N.C.	The rice bright green leaf (bgl) locus encodes OsRopGEF10, which activates the development of small cuticular papillae on leaf surfaces.	Plant Mol. Biol.	77(6)	631-41	2011	BGL,RAC1	bgl, OsRopGEF10, Os RopGEF10, RopGEF10,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
33456	15118338	Kasai K., Makiko Kawagishi-Kobayashi, Teraishi M., Ito Y., Ochi K., Wakasa K., Tozawa Y.	Differential expression of three plastidial sigma factors, OsSIG1, OsSIG2A, and OsSIG2B, during leaf development in rice.	Biosci. Biotechnol. Biochem.	68(4)	973-7	2004	SIG2B,SIG2A,YGL13	OsSIG2B,OsSIG2A, OsSig2A,OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA
33457	22020099	Heo J.B., Yi Y.B., Bahk J.D.	Rice GDP dissociation inhibitor 3 inhibits OsMAPK2 activity through physical interaction.	Biochem. Biophys. Res. Commun.	414(4)	814-9	2011	_,_,_,MSRMK2	OsGDI3,OsGAP1, GAP1,OsRab11D1, OsRab11, Rab11, ric2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
33458	22027003	Kim H.B., Oh C.J., Park Y.C., Lee Y., Choe S., An C.S., Choi S.B.	Comprehensive analysis of AHL homologous genes encoding AT-hook motif nuclear localized protein in rice.	BMB Rep	44(10)	680-5	2011	AHL1,AHL2,AHL3,AHL4,AHL5,AHL6,AHL7,AHL8,AHL9,AHL10,AHL11,AHL12,AHL13,AHL14,AHL15,AHL16,AHL17,AHL18,AHL19,AHL20	OsAHL1,OsAHL2,OsAHL3,OsAHL4,OsAHL5,OsAHL6,OsAHL7,OsAHL8,OsAHL9,OsAHL10,OsAHL11,OsAHL12,OsAHL13,OsAHL14,OsAHL15,OsAHL16,OsAHL17,OsAHL18,OsAHL19,OsAHL20
33459	22020753	Gao X., Chen Z., Zhang J., Li X., Chen G., Li X., Wu C.	OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice.	Planta	235(4)	713-27	2012	ASP1	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3
33460	21113669	Huang Z., Gan Z., He Y., Li Y., Liu X., Mu H.	Functional analysis of a rice late pollen-abundant UDP-glucose pyrophosphorylase (OsUgp2) promoter.	Mol. Biol. Rep.	38(7)	4291-302	2011	UGP2	Ugp2, OsUgp2
33461	22003982	Lee D.Y., An G.	Two AP2 family genes, SUPERNUMERARY BRACT (SNB) and OsINDETERMINATE SPIKELET 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.	Plant J.	69(3)	445-61	2012	FZP,MIR172B,MIR172C,MIR172D,IDS1,SNB,DL,MIR172A	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2 ,AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB,DL, dl(lop), lop, dl, dl1,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a 
33462	22039214	Liu W., Kohlen W., Lillo A., Op den Camp R., Ivanov S., Hartog M., Limpens E., Jamil M., Smaczniak C., Kaufmann K., Yang W.C., Hooiveld G.J., Charnikhova T., Bouwmeester H.J., Bisseling T., Geurts R.	Strigolactone Biosynthesis in Medicago truncatula and Rice Requires the Symbiotic GRAS-Type Transcription Factors nsp1 and NSP2.	Plant Cell	23(10)	3853-65	2011	D27,NSP1,NSP2	d27(d t), dt, dwf23, d27, OsD27,Os NSP1, OsNSP1, OsGRAS-14, OsGRAS14, GRAS-14, GRAS14,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13
33463	21979082	Wutipraditkul N., Boonkomrat S., Buaboocha T.	Cloning and characterization of catalases from rice, Oryza sativa L.	Biosci. Biotechnol. Biochem.	75(10)	1900-6	2011	CATC,CATA,CATB	OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
33464	21984902	Ma H., Zhao H., Liu Z., Zhao J.	The phytocyanin gene family in rice (Oryza sativa L.): genome-wide identification, classification and transcriptional analysis.	PLoS ONE	6(10)	e25184	2011	UCL6,UCL14,UCL21,ENODL15,ENODL23,UCL1,UCL2,UCL3,UCL5,UCL9,ENODL9,UCL4,UCL10,UCL11,UCL15,UCL16,UCL17,UCL18,UCL19,UCL13,UCL12,UCL20,UCL22,UCL26,UCL25,ENODL3,ENODL4,ENODL1,ENODL2,ENODL5,ENODL6,ENODL7,ENODL8,ENODL10,ENODL11,ENODL12,ENODL13,ENODL18,ENODL19,ENODL20,ENODL21,ENODL22,ENODL24,UCL24,UCL27,UCL28,UCL29,UCL30,UCL31,UCL32,UCL34,_,_,_,UCL7,UCL23,UCL8,ENODL16,ENODL17,ENODL14,UCL33,UCL35	OsUCL6,OsUCL14,OsUCL21,OsENODL15,OsENODL23,OsUCL1,OsUCL2,OsUCL3,OsUCL5,OsUCL9,OsENODL9,OsUCL4,OsUCL10,OsUCL11,OsUCL15,OsUCL16,OsUCL17,OsUCL18,OsUCL19,OsUCL13,OsUCL12,OsUCL20,OsUCL22,OsUCL26,OsUCL25,OsENODL3,OsENODL4,OsENODL1, OsELA1, ELA1,OsENODL2,OsENODL5,OsENODL6, OsELA2, ELA2, OsEnS-24,OsENODL7,OsENODL8,OsENODL10,OsENODL11,OsENODL12,OsENODL13,OsENODL18, OsELA3, ELA3 ,OsENODL19,OsENODL20,OsENODL21,OsENODL22,OsENODL24,OsUCL24,OsUCL27,OsUCL28,OsUCL29,OsUCL30,OsUCL31,OsUCL32,OsUCL34,OsSCL1,OsSCL2,OsSCL3,OsUCL7,OsUCL23,OsUCL8,OsENODL16,OsENODL17,OsENODL14,OsUCL33,OsUCL35
33465	22010949	Wang W.H., K?hler B., Cao F.Q., Liu G.W., Gong Y.Y., Sheng S., Song Q.C., Cheng X.Y., Garnett T., Okamoto M., Qin R., Mueller-Roeber B., Tester M., Liu L.H.	Rice DUR3 mediates high-affinity urea transport and plays an effective role in improvement of urea acquisition and utilization when expressed in Arabidopsis.	New Phytol.	193(2)	432-44	2012	_,AMT1;3,NGLF,_	OsDUR3, DUR3 ,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,
33466	22042862	Lee I., Seo Y.S., Coltrane D., Hwang S., Oh T., Marcotte E.M., Ronald P.C.	Genetic dissection of the biotic stress response using a genome-scale gene network for rice.	Proc. Natl. Acad. Sci. U.S.A.	108(45)	18548-53	2011	XA21,_,_,_	Xa21*, Xa21, OsXA21,ROX2,ROX1,ROX3
33467	21904112	Shimada T., Ogawa Y., Shimada T., Hara-Nishimura I.	A non-destructive screenable marker, OsFAST, for identifying transgenic rice seeds.	Plant Signal Behav	6(10)	1454-6	2011	OLE4	OsOLE4, Os-OLE4
33468	22038091	Du H., Liu L., You L., Yang M., He Y., Li X., Xiong L.	Characterization of an inositol 1,3,4-trisphosphate 5/6-kinase gene that is essential for drought and salt stress responses in rice.	Plant Mol. Biol.	77(6)	547-63	2011	DSM3,ITPK5,ITPK6,ITPK3,ITPK4,ITPK1	OsITPK2, ITPK2, OsDSM3, OsITP5/6K-2, OsITL1,OsITPK5, OsITP5/6K-5, OsITL3,OsITPK6, OsITP5/6K-6, ITP5/6K-6,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2
33469	21973088	Qi Y., Wang S., Shen C., Zhang S., Chen Y., Xu Y., Liu Y., Wu Y., Jiang D.	OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).	New Phytol.	193(1)	109-20	2012	ARF8,MIR167D,ARF6B	OsARF8, OsARF12, ARF12,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,OsARF6b, OsARF25, ARF25
33470	22016342	Yadav S.R., Khanday I., Majhi B.B., Veluthambi K., Vijayraghavan U.	Auxin-Responsive OsMGH3, a Common Downstream Target of OsMADS1 and OsMADS6, Controls Rice Floret Fertility.	Plant Cell Physiol.	52(12)	2123-35	2011	MFO1,GH3-8,LHS1	OsMADS6, MADS6, OsMFO1,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
33471	22010108	Zhang C.J., Zhao B.C., Ge W.N., Zhang Y.F., Song Y., Sun D.Y., Guo Y.	An Apoplastic H-Type Thioredoxin Is Involved in the Stress Response through Regulation of the Apoplastic Reactive Oxygen Species in Rice.	Plant Physiol.	157(4)	1884-99	2011	TRXH4,TRAB1,TRXH,BZIP23,SOS1,TRXH3,TRXH2,TRXH5,TRXH10,TRXH8,_,TRXH7,DREB1B,EM,PITA,TRXH9	OsTRXh4, OsTrx10, Os3, OsTrxh3,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsSOS1, OsNHA1,OsTRXh3, OsTrx26, antiSTR1,OsTRXh2, Os2, OsTrxh2,OsTRXh5, OsTrx24, Os4, OsTrxh4,OsTRXh10, OsTRX2, TRX2, TRXF, OsTRXF,OsTRXh8, OsTrx18, Os5, OsTrxh5,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsTRXh7, OsTrx1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,OsTRXh9, OsTrx20
33472	22035218	Huang C.F., Yamaji N., Chen Z., Ma J.F.	A tonoplast-localized half-size ABC transporter is required for internal detoxification of aluminum in rice.	Plant J.	69(5)	857-67	2012	ALS1,NRAMP4,ART1	OsALS1, OsABCB25, ABCB25,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,ART1, STAR3
33473	22041789	Kim S.K., You Y.N., Park J.C., Joung Y., Kim B.G., Ahn J.C., Cho H.S.	The rice thylakoid lumenal cyclophilin OsCYP20-2 confers enhanced environmental stress tolerance in tobacco and Arabidopsis.	Plant Cell Rep.	31(2)	417-26	2012	CYP20-2	OsCYP20-2, OsCYP-11
33474	21770770	Peng D.H., Qiu D.W., Ruan L.F., Zhou C.F., Sun M.	Protein elicitor PemG1 from Magnaporthe grisea induces systemic acquired resistance (SAR) in plants.	Mol. Plant Microbe Interact.	24(10)	1239-46	2011	NH1,_,PR1A,PAL1,_,PR10A,AOS2	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsEDS1, EDS1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsAOS2, CYP74A2, OsAOS, OsAOS1
33475	22000657	Zhuang X., Fiesselmann A., Zhao N., Chen H., Frey M., Chen F.	Biosynthesis and emission of insect herbivory-induced volatile indole in rice.	Phytochemistry	73(1)	15-22	2012	_,_,_	,OsIGL, OsIgl,OsTSA, pOsTSA, TSbeta
33476	22123026	Ishikawa S., Suzui N., Ito-Tanabata S., Ishii S., Igura M., Abe T., Kuramata M., Kawachi N., Fujimaki S.	Real-time imaging and analysis of differences in cadmium dynamics in rice cultivars (Oryza sativa) using positron-emitting 107Cd tracer.	BMC Plant Biol.	11(1)	172	2011	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3
33477	22101802	Narawongsanont R., Kabinpong S., Auiyawong B., Tantitadapitak C.	Cloning and Characterization of AKR4C14, a Rice Aldo-keto reductase, from Thai Jasmine Rice.	Protein J.	31(1)	35-42.	2012	AKR2,ARK1	OsAKR2, AKR4C14,OsARK1
33478	22140509	Ramamoorthy R., Jiang S.Y., Ramachandran S.	Oryza sativa Cytochrome P450 Family Member OsCYP96B4 Reduces plant height in a Transcript Dosage Dependent Manner.	PLoS ONE	6(11)	e28069	2011	SD37	OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1
33479	22080728	Sturms R., Dispirito A.A., Fulton D.B., Hargrove M.S.	Hydroxylamine reduction to ammonium by plant and cyanobacterial hemoglobins.	Biochemistry	50(50)	10829-35	2011	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
33480	22084314	Takahashi H., Kawakatsu T., Wakasa Y., Hayashi S., Takaiwa F.	A Rice Transmembrane bZIP Transcription Factor, OsbZIP39, Regulates the Endoplasmic Reticulum Stress Response.	Plant Cell Physiol.	53	144-153	2011	BZIP39,BZIP60,BZIP50	OsbZIP39, bZIP39,OsbZIP60, bZIP60,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S
33481	22058019	Park H.S., Ryu H.Y., Kim B.H., Kim S.Y., Yoon I.S., Nam K.H.	A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice.	Mol. Cells	32(6)	561-9	2011	_,_,_,_,_,TMS10,_,_,_,_	OsSERL3,OsBiSERK1,OsSERL1, OsBAK1-8,OsSERL4, OsBAK1-9, Docs1,OsSERL2, SERL2, SERK1, OsBAK1-7, BAK1-7,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERL8, OsBAK1-6, SERL8, BAK1-6, TMS10L,OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2
33482	22123790	Satoh-Nagasawa N., Mori M., Nakazawa N., Kawamoto T., Nagato Y., Sakurai K., Takahashi H., Watanabe A., Akagi H.	Mutations in rice (Oryza sativa) heavy metal ATPase 2 (OsHMA2) restrict the translocation of Zn and Cd.	Plant Cell Physiol.	53(1)	213-24	2012	HMA2	OsHMA2, osHMA2, OsHMA2v 
33483	22142475	Jiang L., Qian D., Zheng H., Meng L.Y., Chen J., Le W.J., Zhou T., Zhou Y.J., Wei C.H., Li Y.	RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus.	Virus Res.	163(2)	512-9	2012	RDR3,RDR2,SHL2,RDR1,RDR4	OsRDR3, OsRDR3a,OsRDR2,shl2, SHL2, sh2, OsRDR6, RDR6,OsRDR1,OsRDR4, OsRDR3b
33484	22050533	Hayashi S., Wakasa Y., Takahashi H., Kawakatsu T., Takaiwa F.	Signal transduction by IRE1-mediated splicing of bZIP50 and other stress sensors in the endoplasmic reticulum stress response of rice.	Plant J.	69	946-956	2012	_,_,_,BZIP60,_,_,BZIP50,IRE1,_,_,_,_,_,CNX,BZIP39,_	OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsDjB6, OsERdj3B,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsbZIP60, bZIP60,OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,IRE1, OsIRE1, OsIre1,OsBiP3, BiP3,,ERO1, Ero1,OsBiP2, Bip2,NEF,OsCNX, OsCNX1, CNX1,OsbZIP39, bZIP39,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d
33485	22147560	Singh A., Mittal D., Lavania D., Agarwal M., Mishra R.C., Grover A.	OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).	Cell Stress Chaperones	17(2)	243-54.	2011	HSP101,CLPB-M,CLPB-C	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,ClpB-m, OsClpB-m,ClpB-c, OsClpB-c
33486	22057936	Hu T., Zeng H., He S., Wu Y., Wang G., Huang X.	Molecular Analysis of OsLEA4 and Its Contributions to Improve E. coli Viability.	Appl. Biochem. Biotechnol.	166(1)	222-33	2012	LEA2	OsLEA2, OsLEA4
33487	22127413	He S., Tan L., Hu Z., Chen G., Wang G., Hu T.	Molecular characterization and functional analysis by heterologous expression in E. coli under diverse abiotic stresses for OsLEA5, the atypical hydrophobic LEA protein from Oryza sativa L.	Mol. Genet. Genomics	287(1)	39-54	2012	LEA8	OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5
33488	22207574	Ning J., Zhang B., Wang N., Zhou Y., Xiong L.	Increased leaf angle1, a Raf-like MAPKKK that interacts with a nuclear protein family, regulates mechanical tissue formation in the Lamina joint of rice.	Plant Cell	23(12)	4334-47	2012	IIP3,IIP2,IIP4,IIP5,ILA1,IIP6,ILA1	IIP3,IIP2,IIP4,IIP5,OsILA1, OsACTPK4, ACTPK4,IIP6,IIP1
33489	22130861	Wang Y., Wan L., Zhang L., Zhang Z., Zhang H., Quan R., Zhou S., Huang R.	An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice.	Plant Mol. Biol.	78(3)	275-88	2012	ERF127,ERF1,ERF2,ERF3	OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12
33490	22150097	Xue Z., Duan L., Liu D., Guo J., Ge S., Dicks J., ?M?ille P., Osbourn A., Qi X.	Divergent evolution of oxidosqualene cyclases in plants.	New Phytol.	193(4)	1022-38	2012	_,_,_,_	OsOSC8,OsOSC2, CAS1,OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j ,OsIAS, OsOSC11, IAS, OSC11
33491	22146717	Seto Y., Hamada S., Ito H., Masuta C., Matsui H., Nabeta K., Matsuura H.	Tobacco salicylic acid glucosyltransferase is active toward tuberonic acid (12-hydroxyjasmonic acid) and is induced by mechanical wounding stress.	Biosci. Biotechnol. Biochem.	75(12)	2316-20	2011	_	OsSGT, SGT, UGT74H3
33492	22160725	Uraguchi S., Kamiya T., Sakamoto T., Kasai K., Sato Y., Nagamura Y., Yoshida A., Kyozuka J., Ishikawa S., Fujiwara T.	Low-affinity cation transporter (OsLCT1) regulates cadmium transport into rice grains.	Proc. Natl. Acad. Sci. U.S.A.	108(52)	20959-64	2011	LCT1	OsLCT1
33493	22189955	Liu C., Wu Y., Wang X.	bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice.	Planta	235(6)	1157-69	2012	LEA22,LEA3-1,_,BGAL1,RISBZ5,TPP1	OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,gp1,OsBgal1, beta-gal, OsBGal1,OsbZIP52,OsTPP1, OsTPS
33494	22212404	Campos-Soriano L., Garc?a-Mart?nez J., Segundo B.S.	The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.	Mol. Plant Pathol.	13(6)	579-92	2012	MPK6,NH1,CAM,AOC,PR10A,JAMYB,ERF108,PR1A,CML4,ERF72,CBP,REM1.5,_,MPK7	OsMPK6, OsDR6, OsMPK4,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsCaM,OsAOC, AOC1, OsAOC1, HB, CPM2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsJAmyb, JAmyb, OsJAMyb ,OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsCML4,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,OsCBP,OsREM1.5,OsDUF26, CRRSP, OsCRRSP55, CRRSP55,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5
33495	22196946	Chou T.S., Chao Y.Y., Kao C.H.	Involvement of hydrogen peroxide in heat shock- and cadmium-induced expression of ascorbate peroxidase and glutathione reductase in leaves of rice seedlings.	J. Plant Physiol.	169(5)	478-86	2012	APX8,APX3,_,_,APX4,APX1,APX2,APX6,_,APX5,APX7	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsGR1, GR1, OsGR2,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx6, OsAPx06, OSAPX6, APx6,OsGR3, GR3,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX
33496	22199238	Lu S.J., Yang Z.T., Sun L., Sun L., Song Z.T., Liu J.X.	Conservation of IRE1-Regulated bZIP74 mRNA Unconventional Splicing in Rice (Oryza sativa L.) Involved in ER Stress Responses.	Mol Plant	5(2)	504-14	2012	_,BZIP50,IRE1	OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,IRE1, OsIRE1, OsIre1
33498	22201023	Hur Y.J., Yi Y.B., Lee J.H., Chung Y.S., Jung H.W., Yun D.J., Kim K.M., Park D.S., Kim D.H.	Molecular cloning and characterization of OsUPS, a U-box containing E3 ligase gene that respond to phosphate starvation in rice (Oryza sativa).	Mol. Biol. Rep.	39(5)	5883-8	2012	_	OsUPS, OsPUB41
33499	22284711	Han B., Xu S., Xie Y.J., Huang J.J., Wang L.J., Yang Z., Zhang C.H., Sun Y., Shen W.B., Xie G.S.	ZmHO-1, a maize haem oxygenase-1 gene, plays a role in determining lateral root development.	Plant Sci.	184	63-74	2012	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
33500	22228185	Lee S., Kim Y.S., Jeon U.S., Kim Y.K., Schjoerring J.K., An G.	Activation of Rice nicotianamine synthase 2 (OsNAS2) enhances iron availability for biofortification.	Mol. Cells	33(3)	269-75	2012	YSL15,IRT1,IRT2,YSL2,NAS2	OsYSL15, OsYs7,OsIRT1,OsIRT2, OsIRT1,OsYSL2, Os-YSL2, OsYs6 ,OsNAS2
33501	22350999	Endo M., Shimizu T., Toki S.	Selection of transgenic rice plants using a herbicide tolerant form of the acetolactate synthase gene.	Methods Mol. Biol.	847	59-66	2012	ALS	OsALS, AHAS
33503	22274888	Gao D.	Identification of an active Mutator-like element (MULE) in rice (Oryza sativa).	Mol. Genet. Genomics	287(3)	261-71	2012	_,_,_,_,_,_,_,_	Os3378-1,Os3378-2,Os3378-3,Os3378-4,,,,
33504	22264357	Kurusu T., Nishikawa D., Yamazaki Y., Gotoh M., Nakano M., Hamada H., Yamanaka T., Iida K., Nakagawa Y., Saji H., Shinozaki K., Iida H., Kuchitsu K.	Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells.	BMC Plant Biol.	12	11	2012	_	OsMCA1
33505	22228180	Lee S., Ryoo N., Jeon J.S., Guerinot M.L., An G.	Activation of rice Yellow Stripe1-Like 16 (OsYSL16) enhances iron efficiency.	Mol. Cells	33(2)	117-26	2012	YSL16,YSL9,YSL15,YSL2	OsYSL16, Os-YSL16, OsYs14 ,OsYSL9, OsYs13 ,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 
33506	22246661	Solt?sz A., V?g?jfalvi A., Rizza F., Kerepesi I., Galiba G., Cattivelli L., Coraggio I., Crosatti C.	The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.	J. Appl. Genet.	53	133-143	2012	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8
33507	22247270	Wang Q., Hillwig M.L., Wu Y., Peters R.J.	CYP701A8: a rice ent-kaurene oxidase paralog diverted to more specialized diterpenoid metabolism.	Plant Physiol.	158(3)	1418-25	2012	KO1,KO4,D35,KO5	OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKO5, OSKOL5, KOS2, CYP701A9
33508	22218675	Liu B., Fan J., Zhang Y., Mu P., Wang P., Su J., Lai H., Li S., Feng D., Wang J., Wang H.	OsPFA-DSP1, a rice protein tyrosine phosphatase, negatively regulates drought stress responses in transgenic tobacco and rice plants.	Plant Cell Rep.	31	1021-1032	2012	_,_,GSN1,_,_	OsPFA-DSP3,OsPFA-DSP1, OsPP105,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsPFA-DSP4, OsSTA281,OsPFA-DSP2, OsPP39
33509	22285622	Kim I.A., Kim B.G., Kim M., Ahn J.H.	Characterization of hydroxycinnamoyltransferase from rice and its application for biological synthesis of hydroxycinnamoyl glycerols.	Phytochemistry	76	25-31	2012	HCT1,HCT4,HCT3,HCT2	OsHCT1,OsHCT4,OsHCT3, Os-PHT1, OsPHT1, PHT1,OsHCT2, HCT
33510	22253868	Xia K., Wang R., Ou X., Fang Z., Tian C., Duan J., Wang Y., Zhang M.	OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice.	PLoS ONE	7(1)	e30039	2012	_,_,_,MIR393,_	OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,OsMGT6, OsMRS2-4,OsGIF3, GIF3, OsGIF1, GIF1, MKB3,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsTIR1, TIR1, OsFbox248, Os_F0717
33511	22248237	Shingu Y., Tokai T., Agawa Y., Toyota K., Ahamed S., Kawagishi-Kobayashi M., Komatsu A., Mikawa T., Yamamoto M.T., Wakasa K., Shibata T., Kusano K.	The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay.	BMC Mol. Biol.	13	1	2012	SPO11-4,TOP6A3,TOP6A1,TOP6A2	OsSPO11-4, OsSPO11D,OsTOP6A3, OsSPO11-3, OsSPO11C,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsTOP6A2, OsSpo11-2, OsSPO11-2, OsSPO11B
33513	22226678	Zhou S., Sawicki A., Willows R.D., Luo M.	C-terminal residues of oryza sativa GUN4 are required for the activation of the ChlH subunit of magnesium chelatase in chlorophyll synthesis.	FEBS Lett.	586(3)	205-10	2012	YGL98,_,_,ELL	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,OsChlH, ChlH, CHLH, OsCHLH,GUN4, OsGUN4,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL 
33514	22286138	Tanaka W., Toriba T., Ohmori Y., Yoshida A., Kawai A., Mayama-Tsuchida T., Ichikawa H., Mitsuda N., Ohme-Takagi M., Hirano H.Y.	The YABBY gene TONGARI-BOUSHI1 is involved in lateral organ development and maintenance of meristem organization in the rice spikelet.	Plant Cell	24(1)	80-95	2012	YAB5	OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1
33515	22286805	Hong L., Qian Q., Tang D., Wang K., Li M., Cheng Z.	A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype.	Planta	236(1)	141-51	2012	_	gh1, GH1, OsCHI, Cfi, CHI
33516	22341501	Sansenya S., Maneesan J., Cairns J.R.	Exchanging a single amino acid residue generates or weakens a +2 cellooligosaccharide binding subsite in rice beta-glucosidases.	Carbohydr. Res.	351	130-3	2012	BGLU6,BGLU7,BGLU12	Os3bglu6, Os3BGlu6, 3BGlu6,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2
33517	22368778	Ishimaru Y., Takahashi R., Bashir K., Shimo H., Senoura T., Sugimoto K., Ono K., Yano M., Ishikawa S., Arao T., Nakanishi H., Nishizawa N.K.	Characterizing the role of rice NRAMP5 in Manganese, Iron and Cadmium Transport.	Sci Rep	2	286	2012	ZIP3,NRAMP5,YSL2,YSL15	OsZIP3,OsNRAMP5, OsNramp5,OsYSL2, Os-YSL2, OsYs6 ,OsYSL15, OsYs7
33518	22262313	Chen Y.H., Chao Y.Y., Hsu Y.Y., Hong C.Y., Kao C.H.	Heme oxygenase is involved in nitric oxide- and auxin-induced lateral root formation in rice.	Plant Cell Rep.	31	1085-1091	2012	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
33519	22247560	Yang Y., Ishino S., Yamagami T., Kumamaru T., Satoh H., Ishino Y.	The OsGEN-L protein from Oryza sativa possesses Holliday junction resolvase activity as well as 5'-flap endonuclease activity.	J. Biochem.	151(3)	317-27	2012	RAD,_	rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 ,OsPCNA, PCNA
33520	22448275	Liu J., Zhou J., Xing D.	Phosphatidylinositol 3-Kinase Plays a Vital Role in Regulation of Rice Seed Vigor via Altering NADPH Oxidase Activity.	PLoS ONE	7(3)	e33817	2012	_,_,_,_,_,_,_,_,_,_	Os rboh6,Os rboh8,Os rboh9,Os rboh7,PI3K,Os rboh1,Os rboh2,Os rboh3,Os rboh4,Os rboh5
33521	22308482	Ding J., Lu Q., Ouyang Y., Mao H., Zhang P., Yao J., Xu C., Li X., Xiao J., Zhang Q.	A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice.	Proc. Natl. Acad. Sci. U.S.A.	109(7)	2654-9	2012	PMS3	pms3, LDMAR
33522	22278768	Distelfeld A., Pearce S.P., Avni R., Scherer B., Uauy C., Piston F., Slade A., Zhao R., Dubcovsky J.	Divergent functions of orthologous NAC transcription factors in wheat and rice.	Plant Mol. Biol.	78(4-5)	515-24	2012	NAC10	ONAC010, ONAC10, OsSTA199
33523	22247252	Hu J., Wang K., Huang W., Liu G., Gao Y., Wang J., Huang Q., Ji Y., Qin X., Wan L., Zhu R., Li S., Yang D., Zhu Y.	The rice pentatricopeptide repeat protein Rf5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162.	Plant Cell	24(1)	109-22	2012	_,_,_,_,RF1	PPR794, PPR6, PPR6-794, PPR5,atp6-orfH79,PPR683, PPR5, PPR5-683,GRP162,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6
33524	22195590	Awasthi A., Paul P., Kumar S., Verma S.K., Prasad R., Dhaliwal H.S.	Abnormal endosperm development causes female sterility in rice insertional mutant OsAPC6.	Plant Sci.	183	167-74	2012	_	OsAPC6, APC6
33525	22367534	De Pino V., Marino Busjle C., Moreno S.	Oligomerization of the reversibly glycosylated polypeptide: its role during rice plant development and in the regulation of self-glycosylation.	Protoplasma	250(1)	111-9	2013	_,_	OsRGP1, C1RGP,OsRGP2, C2RGP
33526	22301130	Tang N., Zhang H., Li X., Xiao J., Xiong L.	Constitutive Activation of Transcription Factor OsbZIP46 Improves drought tolerance in Rice.	Plant Physiol.	158(4)	1755-68	2012	SAPK7,SAPK6,SAPK1,SAPK3,SAPK5,SAPK8,SAPK9,SAPK10,SAPK2,SAPK4,BZIP46,RAB16A,BZIP23	OsSAPK7,OsSAPK6, OSRK1,OsSAPK1,OsSAPK3, REK,OsSAPK5,OsSAPK8,OsSAPK9,OsSAPK10,OsSAPK2,OsSAPK4,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
33527	22362377	Lu L., Zhou F., Zhou Y., Fan X., Ye S., Wang L., Chen H., Lin Y.	Expression profile analysis of the polygalacturonase-inhibiting protein genes in rice and their responses to phytohormones and fungal infection.	Plant Cell Rep.	31(7)	1173-87.	2012	PGIP6,PGIP3,PGIP4,PGIP1,FOR1,PGIP7,PGIP2	Ospgip6, pgip6, OsPGIP6,Ospgip3, pgip3, OsPGIP3,Ospgip4, pgip4, OsPGIP4,Ospgip1, pgip1, OsPGIP1,OsFOR1, Osfor1,Ospgip7, pgip7, OsPGIP7,Ospgip2, pgip2, OsPGIP2
33528	22302312	Singh A.K., Kumar R., Pareek A., Sopory S.K., Singla-Pareek SL.	Overexpression of Rice CBS Domain Containing Protein Improves Salinity, Oxidative, and Heavy Metal Tolerance in Transgenic Tobacco.	Mol. Biotechnol.	52(3)	205-16	2012	_	OsCBSX4, OsCBSX4a, OsCBSX4b, OsCBSX4c, OsCBSX4d, OsCBSX4e, OsCBSX4f
33529	22367482	Paul P., Awasthi A., Rai A.K., Gupta S.K., Prasad R., Sharma T.R., Dhaliwal H.S.	Reduced tillering in Basmati rice T-DNA insertional mutant OsTEF1 associates with differential expression of stress related genes and transcription factors.	Funct. Integr. Genomics	12(2)	291-304	2012	_	OsTEF1
33530	22370743	Marla S.S., Singh V.K.	LOX genes in blast fungus (Magnaporthe grisea) resistance in rice.	Funct. Integr. Genomics	12(2)	265-75	2012	LOX7,LOX3,LOX10,LOX2,LOX11,LOX1,SPH,LOX12,LOX1,LOX8,_,R9-LOX1	OsLOX7,Lox3*, lox3(t), LOX-3, Lox3, OsLOX4, LOX4,OsLOX10, OsLOX3, LOX3,OsLOX2,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2,OsLOX1,OsLOX6, LOX6,OsLOX12,OsLOX1, OsLOX5,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,Osr9-LOX1, OsLOX3, LOX3
33531	22435142	Soren K.R., Ali K., Tyagi A.	Cloning and characterization of a gene encoding novel zinc finger protein transcription factor induced under water deficit stress from rice (Oryza sativa) cv. N-22.	Indian J. Biochem. Biophys.	49(1)	36-41	2012	_	OsZnI
33532	22367483	Thalapati S., Batchu A.K., Neelamraju S., Ramanan R.	Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice.	Funct. Integr. Genomics	12(2)	277-89	2012		
33533	22321692	Zou J., Liu C., Liu A., Zou D., Chen X.	Overexpression of OsHsp17.0 and OsHsp23.7 enhances drought and salt tolerance in rice.	J. Plant Physiol.	169(6)	628-35	2012	HSP23.7,HSP16.9B	OsHsp23.7, OsHSP23.7,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3
33534	10769179	C Curie, J M Alonso, M Le Jean, J R Ecker, J F Briat	Involvement of NRAMP1 from Arabidopsis thaliana in iron transport.	Biochem. J.	347 Pt 3	749-55	2000	NRAMP1,NRAMP3,NRAMP2	OsNramp1, OsNRAMP1, OsNramp6,OsNramp3, OsNRAMP3,OsNramp2, OsNRAMP2
33535	16359387	Kobayashi Y., Murata M., Minami H., Yamamoto S., Kagaya Y., Hobo T., Yamamoto A., Hattori T.	Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.	Plant J.	44(6)	939-49	2005	SAPK8,SAPK10,TRAB1,SAPK9	OsSAPK8,OsSAPK10,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsSAPK9
33536	22332708	Pu C.X., Ma Y., Wang J., Zhang Y.C., Jiao X.W., Hu Y.H., Wang L.L., Zhu Z.G., Sun D., Sun Y.	Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma, and fertility in rice, by promoting epidermal cell differentiation.	Plant J.	70(6)	940-53	2012	MFO1,_,_,_,SL1,_,_	OsMADS6, MADS6, OsMFO1,OsCRR1,OsCRR2,OsCRR4,sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB,OsCRR3, CCR3,OsCR4
33537	22195592	Sato H., Yoshida K., Mitsuda N., Ohme-Takagi M., Takamizo T.	Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.	Plant Sci.	183	183-9	2012	RAG,SPW1,MADS58	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,SPW1, spw1, MADS16, OsMADS16,OsMADS58
33539	22353606	Chern M., Bai W., Sze-To WH., Canlas P.E., Bartley L.E., Ronald P.C.	A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.	Plant Methods	8(1)	6	2012	_,NH1,_,_,_	NRR, NRR1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,RH1,RH2,RH3
33540	22319054	Hong L., Tang D., Zhu K., Wang K., Li M., Cheng Z.	Somatic and reproductive cell development in rice anther is regulated by a putative glutaredoxin.	Plant Cell	24(2)	577-88	2012	ZEP1,_,MEL2,MIL1 ,PAIR1,TOP6A1,SDS,RMC1,MEL1,RAD21-4,BZIP41	OsZEP1,OsAM1, SWI1, Osam1, AM1,OsMEL2,MIL1, mil1,Pair1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsSDS, Orysa;SDS,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsbZIP41, TGA1 
33541	22301384	Yang A., Dai X., Zhang W.H.	A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.	J. Exp. Bot.	63	2541-2556	2012	_,_,DREB2A,LEA3-1,RAB16A,_,_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8,OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsMYB2, MYB2,OsMYBS3, MYBS3
33542	22451723	Zhang W., Zhou X., Wen C.K.	Modulation of ethylene responses by OsRTH1 overexpression reveals the biological significance of ethylene in rice seedling growth and development.	J. Exp. Bot.	63(11)	4151-64	2012	_,_,_	OsRTH2, RTH2,OsRTH3, RTH3,OsRTH1, RTH1
33543	22466020	Sharma R., Agarwal P., Ray S., Deveshwar P., Sharma P., Sharma N., Nijhawan A., Jain M., Singh A.K., Singh V.P., Khurana J.P., Tyagi A.K., Kapoor S.	Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice.	Funct. Integr. Genomics	12(2)	229-48	2012	_,RTS,_,AGO3	XYH,RTS, RTS2,OsSub42, SUB42, OsSP2, OS-MSP ,OsAGO3
33544	22380881	Moritoh S., Eun C.H., Ono A., Asao H., Okano Y., Yamaguchi K., Shimatani Z., Koizumi A., Terada R.	Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylation.	Plant J.	71(1)	85-98	2012	DRM2,DRM1B,DRM1A	OsDRM2, osdrm2, DRM2-1,OsDRM1b,OsDRM1a
33545	22428987	Wu H.C., Luo D.L., Vignols F., Jinn T.L.	Heat shock-induced biphasic Ca(2+) signature and OsCaM1-1 nuclear localization mediate downstream signalling in acquisition of thermotolerance in rice (Oryza sativa L.).	Plant Cell Environ.	35	1543-1557	2012	HSP80.2,_,HSP17.4-CI,_,HSP18.0-CIII,HSP17.7,CALB,HSP17.9A,HSP16.9C,CALA,HSP18.0,HSP18.0-CII,_,HSP16.9A	OsHsp80.2, OsHSP80.2,OsCaM3, OsCam3,OsHSP17.4-CI,OsCam1-3, OsCaM1-3, CAM1,OsHSP18.0-CIII,OsHsp17.7, OsHSP17.4-CI, OsHSP17.7, Oshsp17.7,CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI
33546	22434193	Xu C., Wang Y., Yu Y., Duan J., Liao Z., Xiong G., Meng X., Liu G., Qian Q., Li J.	Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.	Nat Commun	3	750	2012	_,TAD1,MOC1	OsAPC10,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33
33547	22408075	Hofmann N.R.	SHAT1, A New Player in Seed Shattering of Rice.	Plant Cell	24(3)	839	2012	SHAT1	SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5
33548	22442415	Liu D., Chen X., Liu J., Ye J., Guo Z.	The rice ERF transcription factor OsERF922 negatively regulates resistance to Magnaporthe oryzae and salt tolerance.	J. Exp. Bot.	63	3899-3912	2012	NCED3,NCED1,ERF92	OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78
33549	22248149	Xie G., Kato H., Imai R.	Biochemical identification of the OsMKK6-OsMPK3 signalling pathway for chilling stress tolerance in rice1.	Biochem. J.	443(1)	95-102	2012	MAPK6,MSRMK2,_,_,MKK6,_,BWMK1,_,MPK6,_,_	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK20-1,OsMPK20-3,OsMKK6, OsMEK1,OsMPK17, OsMPK21-1,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,OsMPK16, MPK16, OsMPK15, MPK15,OsMPK6, OsDR6, OsMPK4,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAP3, MPK14, MPK3,OsMPK20-4, OsWJUMK, WJUMK, OsWJUMK1, WJUMK1, MAPK8, OsMPK8, MPK8
33550	22422982	Alder A., Jamil M., Marzorati M., Bruno M., Vermathen M., Bigler P., Ghisla S., Bouwmeester H., Beyer P., Al-Babili S.	The path from beta-carotene to carlactone, a strigolactone-like plant hormone.	Science	335(6074)	1348-51	2012	D10,D27	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d27(d t), dt, dwf23, d27, OsD27
33551	22445891	Phanchaisri B., Samsang N., Yu L., Singkarat S., Anuntalabhochai S.	Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants.	Mutat. Res.	734(1-2)	56-61	2012	RSG,SPY,SLR1,GF14F,KO4	OsbZIP84, BZIP84,OsSPY,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2
33552	22493492	Shimizu T., Lin F., Hasegawa M., Okada K., Nojiri H., Yamane H.	Purification and identification of naringenin 7-O-methyltransferase, a key enzyme in the biosynthesis of the flavonoid phytoalexin sakuranetin in rice.	J. Biol. Chem.	287(23)	19315-25	2012	NOMT,ROMT9	OsNOMT, COMTL3, OsCOMTL3,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT
33553	22486829	Cai Y., Zhuang X., Wang J., Wang H., Lam S.K., Gao C., Wang X., Jiang L.	Vacuolar degradation of two integral plasma membrane proteins, AtLRR84A and OsSCAMP1, is cargo ubiquitination-independent and prevacuolar compartment-mediated in plant cells.	Traffic	13(7)	1023-40	2012	SCAMP1	Scamp1, OsSCAMP1
33554	22507309	Ji J., Tang D., Wang K., Wang M., Che L., Li M., Cheng Z.	The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis.	Plant J.	72(1)	18-30	2012	ZEP1,_,TOP6A1,PAIR2,COM1,RMC1,RAD21-4,PAIR3	OsZEP1,OsAM1, SWI1, Osam1, AM1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,Pair2, OsPAIR2, OsASY1,OsCOM1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsRad21-4, REC8, OsREC8, OsRAD21-4,
33555	22505428	Miyazono K.I., Koura T., Kubota K., Yoshida T., Fujita Y., Yamaguchi-Shinozaki K., Tanokura M.	Purification, crystallization and preliminary X-ray analysis of OsAREB8 from rice, a member of the AREB/ABF family of bZIP transcription factors, in complex with its cognate DNA.	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	68(Pt 4)	491-4	2012	BZIP46	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46
33556	22465006	Chattopadhyay T., Bhattacharyya S., Das A.K., Maiti M.K.	A structurally novel hemopexin fold protein of rice plays role in chlorophyll degradation.	Biochem. Biophys. Res. Commun.	420(4)	862-8	2012	_	OsHFP
33557	22427359	Gustafson M., Farrugia A.	Albumin from rice: Why and wherefore?	Proc. Natl. Acad. Sci. U.S.A.	109(14)	E775	2012		
33558	22429805	Ouyang Y., Huang X., Lu Z., Yao J.	Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice.	BMC Genomics	13(1)	100	2012	TAD1,ASP1,FIE2,SRWD1,SRWD2,SRWD4,C3H17,ATG18A,ATG18E,SRWD5,_,SRWD3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RLCK316,_,_,_,_,RLCK318,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FIE1,RACK1,PPS,RGB1,CYP71,PHF1,ATG18B,ATG18C,PHF1L,ATG18D,ATG18F	TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3,OsFIE2, FIE, OsWD40-153,SRWD1, OsWD40-162,SRWD2, OsWD40-52,SRWD4, OsWD40-160,OsC3H17, OsWD40-49 ,OsATG18a, OsWD40-56 ,OsATG18e, OsWD40-27 ,SRWD5, OsWD40-73,OsWD40-158,SRWD3, OsWD40-126,OsWD40-76,OsWD40-77,OsWD40-82,OsWD40-87,OsWD40-88,OsWD40-89,OsWD40-91,OsWD40-98,OsWD40-99,OsWD40-100,OsWD40-104,OsWD40-105,OsWD40-106,OsWD40-107,OsWD40-111,OsWD40-112,OsWD40-113,OsWD40-117,OsWD40-124,OsWD40-127,OsWD40-128,OsWD40-129,OsWD40-130,OsWD40-131,OsWD40-132,OsWD40-133,OsWD40-134,OsWD40-135,OsWD40-139,OsWD40-140,OsWD40-141,OsWD40-142,OsWD40-143,OsWD40-145,OsWD40-146,OsWD40-147,OsWD40-136,OsWD40-148,OsWD40-149,OsWD40-150,OsWD40-151,OsWD40-152,OsWD40-156,OsWD40-157,OsWD40-161,OsWD40-163,OsWD40-165,OsWD40-167,OsWD40-168,OsWD40-169,OsWD40-170,OsWD40-171,OsWD40-172,OsWD40-174,OsWD40-175,OsWD40-176,OsWD40-177,OsWD40-180,OsWD40-181,OsWD40-182,OsWD40-187,OsWD40-189,OsWD40-110, OsFbox233, Os_F0069,OsWD40-123, OsSPA1,OsWD40-186, OsRLCK316,OsWD40-179, OsKTN80a,OsWD40-125,OsWD40-184, OsFbox571, Os_F0380,OsWD40-178, OsPUB72,OsWD40-188, OsRLCK318,OsWD40-122, OsRACK1B, RACK1B,OsWD40-191,OsWD40-192,OsWD40-194,OsWD40-195,OsWD40-197,OsWD40-198,OsWD40-193, RIP1,OsWD40-138, OsSERL7,OsWD40-199,OsWD40-200,OsWD40-4,OsWD40-74,OsWD40-78,OsWD40-84,OsWD40-85,OsWD40-92,OsWD40-93,OsWD40-95,OsWD40-96,OsWD40-101,OsWD40-102,OsWD40-108,OsWD40-75, Osthi6, thi6,OsWD40-183, OsSTA251,OsWD40-185, OsSTA253,OsWD40-196, OsSTA276,OsWD40-166,OsWD40-173, WD40-173, OsMed4_1, Med4_1 ,OsWD40-116, OseIF3i, eIF3i, EIF3I,OsWD40-115,OsWD40-119,OsWD40-120,OsWD40-121,OsWD40-35,OsWD40-36,OsWD40-37,OsWD40-38,OsWD40-39,OsWD40-109,  WD40-109, OsCDC20, CDC20 ,OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5,OsWD40-83, WD40-83, OsCDT2, CDT2,OsWD40-79, OsMSI1, WD40-79, MSI1,OsWD40-144, WD40-144, OsWDR5b, WDR5b,OsWD40-90,OsWD40-40,OsWD40-41,OsWD40-42,OsWD40-43,OsWD40-44,OsWD40-45,OsWD40-46,OsWD40-5,OsWD40-6,OsWD40-7,OsWD40-8,OsWD40-10,OsWD40-11,OsWD40-13,OsWD40-14,OsWD40-15,OsWD40-16,OsWD40-17,OsWD40-20,OsWD40-22,OsWD40-23,OsWD40-25,OsWD40-28,OsWD40-29,OsWD40-31,OsWD40-53,OsWD40-54,OsWD40-57,OsWD40-58,OsWD40-59,OsWD40-60,OsWD40-62,OsWD40-63,OsWD40-64,OsWD40-65,OsWD40-67,OsWD40-68,OsWD40-69,OsWD40-70,OsWD40-71,OsWD40-72,OsWD40-103,OsWD40-33, OsCCS52B,OsWD40-9, OsPUB71,OsWD40-26, OsKTN80c,OsWD40-34, OsRUP,OsWD40-97,OsWD40-24, OsSPA3/4,OsWD40-2, UV-DDB2, OsUV-DDB2 ,OsWD40-48, OsSTA70,OsWD40-47,OsWD40-32, OsFY, FY,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1,OsWD40-81, OsLST8, LST8,OsWD40-12, TPR1,OsWD40-18, WD40-18, LUG,OsWD40-19, WD40-19,OsWD40-1, WD40-1, OsWD40, WD40,OsWD40-50, OsTTG1A, TTG1A, OsTTG1, TTG1 ,OsWD40-66, TPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2,OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I,OsWD40-190,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsWD40-55, OsCOP1, COP1,OsWD40-80, RGbeta1,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsPHF1, OsWD40-137, OsSEC12,OsATG18b, OsWD40-3 ,OsATG18c, OsWD40-30 ,OsPHF1L, OsWD40-94 ,OsATG18d, OsWD40-114 ,OsATG18f, OsWD40-118 
33559	22395576	Dai X., Wang Y., Yang A., Zhang W.H.	OsMYB2P-1, a R2R3 MYB transcription factor, is involved in regulation of phosphate-starvation responses and root architecture in rice.	Plant Physiol.	159(1)	169-83	2012	PAP10,_,_,PT6,IPS1,_,PT10,PT2,MIR399A,MIR399J,PT8	OsPAP10,OsSQD,OsMYB2P-1,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsIPS1, IPS1,OsSPX1, SPX1,OsPT10, PHT1-10, OsPht1;10,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsPT8, PHT1-8, OsPht1;8, Pht1;8
33560	22383541	Tsai Y.C., Weir N.R., Hill K., Zhang W., Kim H.J., Shiu S.H., Schaller G.E., Kieber J.J.	Characterization of genes involved in cytokinin signaling and metabolism from rice.	Plant Physiol.	158(4)	1666-84	2012	_,HK5,RR1,IPT4,CKX9,LABA1,CKX5,_,RR5,CKX6,RR7,CKX8,CKX10,CKX11,CKX4,EF1,RR9,PRR59,RR10,_,IPT9,LOG1,CKX3,IPT3,RR24,RR22,AHP2,RR25,RR13,RR27,RR12,RR28,RR29,IPT7,RR31,CRL4,_,RR33,_,LOGL1,LOGL3,PHP2,PHP3,_,LOGL5,_,GN1A,RR8,LOGL2,CKX7,LOGL4,LOGL7,CKT1,RR11,AHP1,LOGL8,LOGL10,RR23,CKX1,LOGL9,HD2,HK3,IPT6,_,RR4,RR3,RR6,PRR73,PRR95,RR2,IPT2,TOC1,IPT1,RR21,IPT5,HK4,IPT8,PHP1,IPT10,RR26	CYP735A3,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,rr1, OsRR1, Rra9, OsRRA9,OsIPT4,OsCKX9,LOGL6, OsLOGL6, An-2,OsCKX5, ckx5,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,rr5, OsRR5, Rra4, OsRRA4,OsCKX6,rr7, OsRR7, Rra5, OsRRA5,OsCKX8,OsCKX10,OsCKX11,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsRR10, Rra2, OsRRA2, RR2,CYP735A4, OsCYP735A4,OsIPT9,LOG1, LOG, Log, log,OsCKX3, ckx3,OsIPT3,OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1,OsRR22, Rrb4, Orr2, OsRR20, OsRRB4,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3,OsRR25, Rrb3, Orr5, OsRR21, OsRRB3,OsRR13, Rra12, OsRR12, OsRRA12, RR12,OsRR27, Rra16, OsPRR5, OsRRA16,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OsRR28, Rra22, OsPRR3, OsRRA22,OsRR29, Rrb7, OsPRR4, OsRRB7,OsIPT7,OsRR31,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsRR32,OsRR33, Rra19, OsRRA19,OsRR42, Rra15, OsRR13, OsRRA15,LOGL1,LOGL3,OsPHP2, Hpt4, OsHP5, OsHpt4,OsPHP3, Hpt5, OsHP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsPRR10, Rra18, OsRRA18,LOGL5,OsPRR11,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,LOGL2,OsCKX7,LOGL4,LOGL7,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OsRR11, Rra8, OsRRA8, RR8,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2,LOGL8,LOGL10,OsRR23, Rrb5, Orr3, OsRR18, OsRRB5,OsCKX1,LOGL9,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b,OsIPT6, OsIPT6.p,OsPRR12, Rra17, OsRRA17, OsEnS-61,rr4, OsRR4, Rra3, OsRRA3,OSRR3, OsRR3, rr3, Rra7, OsRRA7,OsRR6, rr6, Rra6, OsRRA6,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsIPT2,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsIPT1,OsRR21, Rrb1, Orr1, OsRR19, OsRRB1, ORR1,OsIPT5,OHK4, HK, OsHK4, Crl1b, Ohk4,OsIPT8,OsPHP1, Hpt1, OsHP3, OsHpt1,OsIPT10,OsRR26, Rrb6, Orr6, OsRR16, OsRRB6
33561	22451926	Hu Y., Liu D., Zhong X., Zhang C., Zhang Q., Zhou D.X.	CHD3 protein recognizes and regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the rice genome.	Proc. Natl. Acad. Sci. U.S.A.	109(15)	5773-8	2012	_,_,_,_,_,_	CHR703,CHR744,CHR723,OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL6,CHR705, chr705,CHR702, chr702
33562	22437844	Kim S.H., Oikawa T., Kyozuka J., Wong H.L., Umemura K., Kishi-Kaboshi M., Takahashi A., Kawano Y., Kawasaki T., Shimamoto K.	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.	Plant Cell Physiol.	53(4)	740-54	2012	MSRMK2,_,_,_,_,WRKY19,SMG1,_,RAC1,_,TDR,PAL1,MAPK6,_	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsbHLH004,OsbHLH155,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,OsRAI1, RAI1, OsbHLH003, bHLH003, bHLH3,OsWRKY19,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
33563	22499210	Zhang C.J., Guo Y.	OsTRXh1 regulates the redox state of the apoplast and influences stress responses in rice.	Plant Signal Behav	7(3)	440-2	2012	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1
33564	17284581	G Eric Schaller, Doi K., Hwang I., Joseph J Kieber, Jitendra P Khurana, Kurata N., Mizuno T., Pareek A., Shin-Han Shiu, Wu P., Wing Kin Yip	Nomenclature for two-component signaling elements of rice.	Plant Physiol.	143(2)	555-7	2007	RR26,EF1,RR25,RR27,RR28,RR29,RR31,_,RR33,_,RR22,HK4,HK1,HK2,_,PHP1,PHP2,PHP3,HK5,ERS2,ETR3,ETR4,_,CKT1,ERS1,ETR2,AHP1,RR23,HK3,_,RR24,_,AHP2,RR21	OsRR26, Rrb6, Orr6, OsRR16, OsRRB6,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsRR25, Rrb3, Orr5, OsRR21, OsRRB3,OsRR27, Rra16, OsPRR5, OsRRA16,OsRR28, Rra22, OsPRR3, OsRRA22,OsRR29, Rrb7, OsPRR4, OsRRB7,OsRR31,OsRR32,OsRR33, Rra19, OsRRA19,OsRR42, Rra15, OsRR13, OsRRA15,OsRR22, Rrb4, Orr2, OsRR20, OsRRB4,OHK4, HK, OsHK4, Crl1b, Ohk4,OsHK1, OHK1,OHK1, HK, OsHK2, Ohk1,OsPRR10, Rra18, OsRRA18,OsPHP1, Hpt1, OsHP3, OsHpt1,OsPHP2, Hpt4, OsHP5, OsHpt4,OsPHP3, Hpt5, OsHP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2,PK3, OsPK3, OsETR4, OS-ETR4,OsPRR11,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2,OsRR23, Rrb5, Orr3, OsRR18, OsRRB5,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b,OsPRR12, Rra17, OsRRA17, OsEnS-61,OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3,OsRR21, Rrb1, Orr1, OsRR19, OsRRB1, ORR1
33565	21757254	Li W., Han Y., Tao F., Chong K.	Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice.	J. Plant Physiol.	168(15)	1837-43	2011	_,_,RFT1,_,HD3A	OsSAM2, OsSAMS2, OS-SAMS2,OsSAMS3, OsSAMS1, SAMS3, SAMS1,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
33566	21828106	Takeuchi K., Gyohda A., Tominaga M., Kawakatsu M., Hatakeyama A., Ishii N., Shimaya K., Nishimura T., Riemann M., Nick P., Hashimoto M., Komano T., Endo A., Okamoto T., Jikumaru Y., Kamiya Y., Terakawa T., Koshiba T.	RSOsPR10 expression in response to environmental stresses is regulated antagonistically by jasmonate/ethylene and salicylic acid signaling pathways in rice roots.	Plant Cell Physiol.	52(9)	1686-96	2011	ERF93,_	OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10
33567	21823826	Xu Z., Rafi S., Ramakrishna W.	Polymorphisms and evolutionary history of retrotransposon insertions in rice promoters.	Genome	54(8)	629-38	2011		
33568	21757998	Isayenkov S., Isner J.C., Maathuis F.J.	Membrane localisation diversity of TPK channels and their physiological role.	Plant Signal Behav	6(8)	1201-4	2011	TPKA,TPKC,TPKB	TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a,TPKc, OsTPKc,TPKb, OsTPKb
33569	21854687	Wang Q., Qi W., Wang Y., Sun F., Qian X., Luo X., Yang J.	Isolation and identification of an AP2/ERF factor that binds an allelic cis-element of rice gene LRK6.	Genet Res (Camb)	93(5)	319-32	2011	ERF3,_,_	AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,LRK6,OsPDCD5, PDCD5
33570	0	L. HOU X., WU P., C. JIAO F., J. JIA Q., M. CHEN H., YU J., W. SONG X., K. YI K.	Regulation of the expression of OsIPS1 and OsIPS2 in rice via systemic and local Pi signalling and hormones	Plant, Cell and Environment	28	353-364	2005	PI1,PI1,IPS1	OsIPS2, IPS2, OsPI1,Pi1, Pi-1, Pi1-5C, Pi1-6C,OsIPS1, IPS1
33571	0	Wasaki J., Yonetani R., Shinano T., Kai M., Osaki M.	Expression of the OsPI1 gene, cloned from rice roots using cDNA microarray, rapidly responds to phosphorus status	New Phytologist	158	239-248	2003	PI1,PI1	OsIPS2, IPS2, OsPI1,Pi1, Pi-1, Pi1-5C, Pi1-6C
33572	0	Chaudhuri,R.K., Datta,A. and Mitra,A.	Rice (Oryza sative ssp. indica) MboI restriction DNA-fragment has nuclear binding capacity	Gene					
33575	0	Huang,H.J.		Thesis  Department of Biology, National Cheng-Kung University, Tainan, Taiwan			2001		
33576	0	Malz,S.		Thesis  Department of General Botany, University of Hamburg, Hamburg, GERMANY			1998		
33577	0	Qu,L.J., Zhang,Y., Liu,M., Gu,H. and Chen,Z.	Characterization and regulation of a rice MADS-box gene	Chin. Sci. Bull.					
33578	0	Shi,J., Cao,Y., Fan,X., Li,M., Wang,Y. and Ming,F.	A rice microsomal delta-12 fatty acid desaturase can enhance resistance to cold stress in yeast and Oryza sativa	Mol. Breed.	29(3)	743-757	2012	_	OsFAD2, OsFAD2-1
33581	0	Zhang,X.		Thesis  National Center for Gene Research			1999		
33582	18315545	Duan K., Yi K., Dang L., Huang H., Wu W., WU P.	Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation.	Plant J.	54(6)	965-75	2008	_	OsSPX1, SPX1
33583	19420327	Chien-Yu Huang, Chun-I Chung, Yao-Cheng Lin, Yue-Ie Caroline Hsing, Anthony H C Huang	Oil bodies and oleosins in Physcomitrella possess characteristics representative of early trends in evolution.	Plant Physiol.	150(3)	1192-203	2009	OLE4,OLE1,OLE2,OLE3,OLE5,OLE6	OsOLE4, Os-OLE4,OsOLE1, Os-OLE1,OsOLE2, Os-OLE2,OsOLE3, Os-OLE3,OsOLE5, Os-OLE5,OsOLE6, Os-OLE6
33584	0	Nakanishi H., Ogawa I., Ishimaru Y., Mori S., Nishizawa N.	Iron deficiency enhances cadmium uptake and translocation mediated by the Fe^<2+> transporters OsIRT1 and OsIRT2 in rice	Soil Sci. Plant Nutr.	52(4)	464 469	2006	IRT1,IRT2,ZIP1	OsIRT1,OsIRT2, OsIRT1,OsZIP1
33585	22106097	Aihong L., Wang Y., Tang J., Xue P., Li C., Liu L., Hu B., Yang F., Loake G.J., Chu C.	Nitric Oxide and protein S-nitrosylation Are Integral to Hydrogen Peroxide Induced Leaf Cell Death in Rice.	Plant Physiol.	158(1)	451-64	2012	_,_,CATC,_	OsGSNOR, GSNOR, GSNOR1, OsGSNOR1,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,OsNIA2
33586	22057934	Godbole A., Mitra R., Dubey A.K., Reddy P.S., Mathew M.K.	Bacterial expression, purification and characterization of a rice voltage-dependent, anion-selective channel isoform, OsVDAC4.	J. Membr. Biol.	244(2)	67-80	2011	_	OsVDAC4, OsVDAC5, VDAC5
33587	22067990	Ning Y., Xie Q., Wang G.L.	OsDIS1-mediated stress response pathway in rice.	Plant Signal Behav	6(11)	1684-6.	2011	_,_,SKIPA	OsDIS1,OsNek6,OsSKIPa, OsSKIP, SKIP
33588	22120082	Wang F.J., Zhu C.	[Heterologous expression of a rice syntaxin-related protein KNOLLE gene (OsKNOLLE) in yeast and its functional analysis in the role of abiotic stress].	Yi Chuan	33(11)	1251-7	2011	_	KN, OsKN, OsSYP111, SYP111
33589	17886359	Fr??d??ric Vigneault, Lachance D., Cloutier M., Pelletier G., Levasseur C., Armand S??guin	Members of the plant NIMA-related kinases are involved in organ development and vascularization in poplar, Arabidopsis and rice.	Plant J.	51(4)	575-88	2007	_,_,_,_,_,_	OsNek5,OsNek3, OsSTA192,OsNek6,OsNek1,OsNek2,OsNek4
33590	14675437	Vannini C., Locatelli F., Bracale M., Magnani E., Marsoni M., Osnato M., Mattana M., Baldoni E., Coraggio I.	Overexpression of the rice Osmyb4 gene increases chilling and freezing tolerance of Arabidopsis thaliana plants.	Plant J.	37(1)	115-27	2004	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8
33591	19017109	Iordachescu M., Imai R.	Trehalose biosynthesis in response to abiotic stresses.	J Integr Plant Biol	50(10)	1223-9	2008	TPP1,TPP2	OsTPP1, OsTPS,OsTPP2
33592	7766875	A Yano, M Umeda, H Uchimiya	Expression of functional proteins of cDNA encoding rice nucleoside diphosphate kinase (NDK) in Escherichia coli and organ-related alteration of NDK activities during rice seed germination (Oryza sativa L.).	Plant Mol. Biol.	27(5)	1053-8	1995	_	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
33593	15890279	Jen-Yen Huang, Chang T., Chia-Yu Chang, Chun-Jung Chen	Crystal structure of Nucleoside diphosphate kinase required for coleoptile elongation in rice (Oryza sativa L.).	J. Struct. Biol.	150(3)	309-18	2005	_	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
33594	10677437	L Pan, M Kawai, A Yano, H Uchimiya	Nucleoside diphosphate kinase required for coleoptile elongation in rice.	Plant Physiol.	122(2)	447-52	2000	_	OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
33595	0	Li X.H., Lu Q., Wang F., Xu C.G., Zhang Q.	Separation of the two-locus inheritance of photoperiod sensitive genic male sterility in rice and precise mapping the pms3 locus.	Euphytica	119(3)	343-348	2001		
33596	18923393	Bowler,C., Allen,A.E., Badger,J.H., Grimwood,J., Jabbari,K., Kuo,A., Maheswari,U., Martens,C., Maumus,F., Otillar,R.P., Rayko,E., Salamov,A., Vandepoele,K., Beszteri,B., Gruber,A., Heijde,M., Katinka,M., Mock,T., Valentin,K., Verret,F., Berges,J.A., Brownlee,C., Cadoret,J.P., Chiovitti,A., Choi,C.J., Coesel,S., De Martino,A., Detter,J.C., Durkin,C., Falciatore,A., Fournet,J., Haruta,M., Huysman,M.J., Jenkins,B.D., Jiroutova,K., Jorgensen,R.E., Joubert,Y., Kaplan,A., Kroger,N., Kroth,P.G., La Roche,J., Lindquist,E., Lommer,M., Martin-Jezequel,V., Lopez,P.J., Lucas,S., Mangogna,M., McGinnis,K., Medlin,L.K., Montsant,A., Oudot-Le Secq,M.P., Napoli,C., Obornik,M., Parker,M.S., Petit,J.L., Porcel,B.M., Poulsen,N., Robison,M., Rychlewski,L., Rynearson,T.A., Schmutz,J., Shapiro,H., Siaut,M., Stanley,M., Sussman,M.R., Taylor,A.R., Vardi,A., von Dassow,P., Vyverman,W., Willis,A., Wyrwicz,L.S., Rokhsar,D.S., Weissenbach,J., Armbrust,E.V., Green,B.R., Van de Peer,Y. and Grigoriev,I.V.	The Phaeodactylum genome reveals the evolutionary history of diatom genomes	Nature	456(7219)	239-244	2008		
33597	0	Chaudhuri,R.K., Mitra,A., Prasad,M. and Chaudhuri,I.	Possible existence of transposon footprints in a rice genomic DNA	Nucleus (Calcutta)	39	24-28	1996		
33598	12172016	Cheng,Z., Dong,F., Langdon,T., Ouyang,S., Buell,C.R., Gu,M., Blattner,F.R. and Jiang,J.	Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon	Plant Cell	14(8)	1691-1704	2002	_	CRR
33599	0	Chen,X., Temnykh,S., Xu,Y., Cho,Y.G. and McCouch,S.R.	Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.)	Theor. Appl. Genet.	95	553-567	1997		
33601	1844878	Claes,B., Smalle,J., Dekeyser,R., Van Montagu,M. and Caplan,A.	Organ-dependent regulation of a plant promoter isolated from rice by 'promoter-trapping' in tobacco	Plant J.	1(1)	15-26	1991		
33602	8315657	Cordesse,F., Cooke,R., Tremousaygue,D., Grellet,F. and Delseny,M.	Fine structure and evolution of the rDNA intergenic spacer in rice and other cereals	J. Mol. Evol.	36(4)	369-379	1993		
33603	11710957	Davierwala,A.P., Ramakrishna,W., Chowdari,V., Ranjekar,P.K. and Gupta,V.S.	Potential of (GATA)n microsatellites from rice for inter- and intra-specific variability studies	BMC Evol. Biol.	1	7	2001		
33605	22158700	Deng,H., Liu,H., Li,X., Xiao,J. and Wang,S.	A CCCH-Type Zinc Finger Nucleic Acid-Binding Protein Quantitatively Confers Resistance against Rice Bacterial Blight Disease	Plant Physiol.	158(2)	876-889	2012	C3H12	OsC3H12
33606	9653153	Dong,F., Miller,J.T., Jackson,S.A., Wang,G.L., Ronald,P.C. and Jiang,J.	Rice (Oryza sativa) centromeric regions consist of complex DNA	Proc. Natl. Acad. Sci. U.S.A.	95(14)	8135-8140	1998		
33607	1782676	Fukuchi,M., Shikanai,T., Kossykh,V.G. and Yamada,Y.	Analysis of nuclear sequences homologous to the B4 plasmid-like DNA of rice mitochondria; evidence for sequence transfer from mitochondria to nuclei	Curr. Genet.	20(6)	487-494	1991		
33608	7719922	Fukuoka,S., Inoue,T., Miyao,A., Monna,L., Zhong,H.S., Sasaki,T. and Minobe,Y.	Mapping of sequence-tagged sites in rice by single strand conformation polymorphism	DNA Res.	1(6)	271-277	1994		
33609	18754079	Gutha,L.R. and Reddy,A.R.	Rice DREB1B promoter shows distinct stress-specific responses, and the overexpression of cDNA in tobacco confers improved abiotic and biotic stress tolerance	Plant Mol. Biol.	68(6)	533-555	2008	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C
33610	0	Heang,D. and Sassa,H.	Antagonistic Actions of HLH/bHLH Proteins Are Involved in Grain Length and Weight in Rice	PLoS ONE 7, e31325  REMARK Publication Status: Online-Only	7(2)	e31325	2012		
33611	22014207	Huang,C.F., Yamaji,N., Ono,K. and Ma,J.F.	A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots	Plant J.	69(4)	565-576	2012	ROC5,ROC4,_,EXPA12	Roc5(t), Roc5, GL2-5, OsROC5,Roc4(t), Roc4, GL2-4,OsSERL4, OsBAK1-9, Docs1,OsEXPA12, OsEXP12, osaEXPa1.15
33612	0	Hung,T. and Chen,S.	Two telomere-associated sequences from rice (Oryza sativa L.)	Theor. Appli. Gen.			1995		
33613	10589837	Iwamoto,M., Nagashima,H., Nagamine,T., Higo,H. and Higo,K.	A tourist element in the 5'-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types	Mol. Gen. Genet.	262(3)	493-500	1999	CATA,_	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,Tourist-OsaCatA
33615	12234680	Jiang,G., Chen,X., Li,W., Jin,Y. and Wang,D.	Identification and characterization of a novel U14 small nucleolar RNA gene cluster in Oryza sativa	Gene	294(1-2)	187	2002	_,_	U14.1,U14.2
33616	2263449	Kim,S.Y. and Wu,R.	Multiple protein factors bind to a rice glutelin promoter region	Nucleic Acids Res.	18(23)	6845-6852	1990	_,GLUA1	,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16
33617	0	Kumar,S.P., Dalal,V., Singh,N.K. and Sharma,T.R.	Cloning and in silico Mapping of Resistance Gene Analogues Isolated from Rice Lines Containing Known Genes for Blast Resistance	J. Phytopathol.	155(5)	273-280	2007		
33618	17522955	Liu,X., Lu,T., Yu,S., Li,Y., Huang,Y., Huang,T., Zhang,L., Zhu,J., Zhao,Q., Fan,D., Mu,J., Shangguan,Y., Feng,Q., Guan,J., Ying,K., Zhang,Y., Lin,Z., Sun,Z., Qian,Q., Lu,Y. and Han,B.	A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies	Plant Mol. Biol.	65(4)	403-415	2007		
33619	22422941	Luo,S., Zhang,Y., Hu,Q., Chen,J., Li,K., Lu,C., Liu,H., Wang,W. and Kuang,H.	Dynamic Nucleotide-Binding-Site and Leucine-Rich-Repeat- encoding Genes in the Grass Family	Plant Physiol.	159(1)	197-210	2012	PI5,PITA,PIKP,PIKM,PIK,PIT,PID3,PI36,PIA,PI37,PIZT,PI9,PIZ,PIB	Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi-d3, Pid3, Pi25,Pi36(t), Pi36,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi37(t), Pi37,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33620	7902724	Mao,L. and Zhu,L.	Molecular study on null allolic RFLPs among rice varieties	I Chuan Hsueh Pao	20(4)	324-333	1993		
33621	20964753	Mather,K.A., Molina,J., Flowers,J.M., Rubinstein,S., Rauh,B.L., Lawton-Rauh,A., Caicedo,A.L., McNally,K.L. and Purugganan,M.D.	Migration, isolation and hybridization in island crop populations: the case of Madagascar rice	Mol. Ecol.	19(22)	4892-4905	2010		
33622	7774793	Mawal,Y., Lagu,M., Moon,E., Chang,S., Chung,M.C., Wu,H.K., Gupta,V., Ranjekar,P. and Wu,R.	BamHI and HindIII repetitive DNA families in the rice genome	Genome	38(2)	191-200	1995		
33623	0	McIntyre,C.L., Winberg,B., Houchins,K., Appels,R. and Baum,B.R.	Relationships between Oryza species based on 5S DNA sequences	Plant Syst. Evol.  In press REMARK (sites)	183	249-264	1992	R5S1	R5s1*, r5s, R5s1
33624	9832537	Miller,J.T., Dong,F., Jackson,S.A., Song,J. and Jiang,J.	Retrotransposon-related DNA sequences in the centromeres of grass chromosomes	Genetics	150(4)	1615-1623	1998		
33625	10380800	Moriyama,H., Horiuchi,H., Nitta,T. and Fukuhara,T.	Unusual inheritance of evolutionarily-related double-stranded RNAs in interspecific hybrid between rice plants Oryza sativa and Oryza rufipogon	Plant Mol. Biol.	39(6)	1127-1136	1999		
33626	10071204	Nonomura,K.I. and Kurata,N.	Organization of the 1.9-kb repeat unit RCE1 in the centromeric region of rice chromosomes	Mol. Gen. Genet.	261(1)	1-10	1999		
33627	0	Ogasawara,H. and Takahashi,S.	Identification of 'Menkoina' from Important Rice Cultivars in Akita Prefecture by STS-PCR Method	Bulletin of the Akita Reseach Insutitute of Food and Brewing	5	48-54	2003		
33628	8914521	Panaud,O., Chen,X. and McCouch,S.R.	Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.)	Mol. Gen. Genet.	252(5)	597-607	1996		
33629	12845436	Park,K.C., Kim,N.H., Cho,Y.S., Kang,K.H., Lee,J.K. and Kim,N.S.	Genetic variations of AA genome Oryza species measured by MITE-AFLP	Theor. Appl. Genet.	107(2)	203-209	2003		
33630	12893965	Park,K.C., Lee,J.K., Kim,N.H., Shin,Y.B., Lee,J.H. and Kim,N.S.	Genetic variation in Oryza species detected by MITE-AFLP	Genes Genet. Syst.	78(3)	235-243	2003	PANGRANGIA	Pangrangia
33631	8682306	Qu,F., Zhai,W., Chen,H., Zhu,L.H. and Morris,T.J.	Cloning, characterization and transient expression of the gene encoding a rice U3 small nuclear RNA	Gene	172(2)	217-220	1996	_	U3
33632	19903220	Qu,S., Jeon,J.S., Ouwerkerk,P.B., Bellizzi,M., Leach,J., Ronald,P. and Wang,G.L.	Construction and application of efficient Ac-Ds transposon tagging vectors in rice	J Integr Plant Biol	51(11)	982-992	2009		
33633	12454082	Ramakrishna,W., Dubcovsky,J., Park,Y.J., Busso,C., Emberton,J., SanMiguel,P. and Bennetzen,J.L.	Different types and rates of genome evolution detected by comparative sequence analysis of orthologous segments from four cereal genomes	Genetics	162(3)	1389-1400	2002		
33634	20550656	Reagon,M., Thurber,C.S., Gross,B.L., Olsen,K.M., Jia,Y. and Caicedo,A.L.	Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice	BMC Evol. Biol.	10	180	2010		
33636	0	Shashikanth,M., Snehalatharani,A., Mubarak begum,S. and Ulaganathan,K.	Genome-wide computational analysis of snRNA genes of Oryza sativa (indica and japonica)	(in) ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY: 277-286; Imperial College Press, 57 Shelton Street, Covent Garden, London, UK 			2006	_,_,_	,,
33638	3401945	Shikanai,T. and Yamada,Y.	Properties of the circular plasmid-like DNA, B4, from mitochondria of cytoplasmic male-sterile rice	Curr. Genet.	13(5)	441-443	1988		
33639	9669326	Song,W.Y., Pi,L.Y., Bureau,T.E. and Ronald,P.C.	Identification and characterization of 14 transposon-like elements in the noncoding regions of members of the Xa21 family of disease resistance genes in rice	Mol. Gen. Genet.	258(5)	449-456	1998	XA21	Xa21*, Xa21, OsXA21
33640	0	Su,C., Xie,J., Wang,X. and Peng,Y.	Integrated structure and event-specific real-time detection of transgenic cry1Ac/SCK rice Kefeng 6	Eur. Food Res. Technol.	232(2)	351-359	2011		
33641	22430843	Su,N., Hu,M.L., Wu,D.X., Wu,F.Q., Fei,G.L., Lan,Y., Chen,X.L., Shu,X.L., Zhang,X., Guo,X.P., Cheng,Z.J., Lei,C.L., Qi,C.K., Jiang,L., Wang,H. and Wan,J.M.	Disruption of a rice PPR protein causes a seedling-specific albino phenotype and its utilization to enhance seed purity in hybrid rice production	Plant Physiol.	159(1)	227-38	2012	_	YSA
33642	9681012	Suoniemi,A., Tanskanen,J. and Schulman,A.H.	Gypsy-like retrotransposons are widespread in the plant kingdom	Plant J.	13(5)	699-705	1998	_	r-Os1
33643	11483586	Temnykh,S., DeClerck,G., Lukashova,A., Lipovich,L., Cartinhour,S. and McCouch,S.	Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential	Genome Res.	11(8)	1441-1452	2001		
33644	0	Temnykh,S., Park,W.D., Ayres,N., Cartinhour,S., Hauck,N., Lipovich,L., Cho,Y.G., Ishii,T. and McCouch,S.R.	Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.)	Theor. Appl. Genet.	100	697-712	2000		
33645	7665075	Tseng,T.C., Tsai,T.H., Lue,M.Y. and Lee,H.T.	Identification of sucrose-regulated genes in cultured rice cells using mRNA differential display	Gene	161(2)	179-182	1995	SALT,_,_,_,_,_	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,SI1,SR3,SI2,SR1,SR4
33647	0	Wang,R.R.C., Li,X. and Chatterton,N.J.	Loss of heterozygosity and accelerated genotype fixation in rice hybrids	Genome	42	789-796	1999		
33648	0	Wang,R.R.C., Li,X., Larson,S.R. and Chatterton,N.J.	Mapping of Eight RAPD Markers Affected by Loss of Heterozygosity in Rice	Rice Biotechnol. Q.	40	16-17	1999		
33649	0	Wang,S., Liu,K. and Zhang,Q.	Segmental duplications are common in rice genome	Acta Bot. Sin.	42(11)	1150-1155	2000		
33650	10732686	Wang,S., Wang,J., Jiang,J. and Zhang,Q.	Mapping of centromeric regions on the molecular linkage map of rice (Oryza sativa L.) using centromere-associated sequences	Mol. Gen. Genet.	263(1)	165-172	2000		
33651	0	Wang,W.X., Zhu,T.H., Lai,F.X. and Fu,Q.	Event-specific qualitative and quantitative detection of transgenic rice Kefeng-6 by characterization of the transgene flanking sequence	Eur. Food Res. Technol.	232	297-305	2011		
33652	16769698	Wang,X., Zhao,X., Zhu,J. and Wu,W.	Genome-wide investigation of intron length polymorphisms and their potential as molecular markers in rice (Oryza sativa L.)	DNA Res.	12(6)	417-427	2005		
33653	0	Williams,M.N.V., Pande,N., Nair,S., Mohan,M. and Bennett,J.	Restriction fragment length polymorphism analysis of polymerase chain reaction products amplified from mapped loci of rice (Oryza sativa L.) genomic DNA	Theor Appl Genet 82 (4), 489-498  REMARK DOI: 10.1007/BF00588604			1991		
33654	0	Wu,T. and Wu,R.	A novel repetitive DNA sequence in the genus Oryza	Theor. Appl. Genet.	84	136-144	1992		
33655	0	Wu,T. and Wu,R.	Isolation and characterization of a telomere like sequence in rice	Rice Genetics Newsletter	10	125-129	1993		
33656	3627973	Wu,T.Y. and Wu,R.	A new rice repetitive DNA shows sequence homology to both 5S RNA and tRNA	Nucleic Acids Res.	15(15)	5913-5923	1987		
33657	0	Xiang,T., Yang,J., Yang,Q., Zhu,Q., Li,L., Ni,D., Wang,X. and Huang,D.	Molecular biological effect of 60Co gamma-ray irradiation on rice genome DNA	Shengwu Huaxue Yu Shengwu Wuli Jinzhan	29	754-759	2002		
33658	20423466	Yamamoto,T., Nagasaki,H., Yonemaru,J., Ebana,K., Nakajima,M., Shibaya,T. and Yano,M.	Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms	BMC Genomics	11	267	2010		
33659	20829346	Yu,G., Olsen,K.M. and Schaal,B.A.	Molecular Evolution of the Endosperm Starch Synthesis Pathway Genes in Rice (Oryza sativa L.) and Its Wild Ancestor, O. rufipogon L	Mol. Biol. Evol.	28(1)	659-671	2011	ISA1,ALK,SBE3,WX1,AGPL2,AGPS2	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
33660	1339378	Yu,S.M., Tzou,W.S., Lo,W.S., Kuo,Y.H., Lee,H.T. and Wu,R.	Regulation of alpha-amylase-encoding gene expression in germinating seeds and cultured cells of rice	Gene	122(2)	247-253	1992	AMY3B,AMY3C,AMY1A,_,AMY3E	Amy3A/B/C*(RAmy3A/B/C), alpha Amy6, AmyII-5, AMY1.6, Amy1.6, Amy3B, BRAmy3A/B/C, Amy3A/B/C*, Amy6, RAmy3B, alphaAmy6-C,Amy3A/B/C*(RAmy3A/B/C), AmyII-6, AMY1.7, Amy3C, RAmy3A/B/C, Amy3A/B/C*, Amy7, AMY3B, RAmy3C,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,alphaAmy10-C,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 
33661	0	Zhou,M.-B., Lu,J.-J., Zhong,H., Liu,X.-M. and Tang,D.-Q.	Distribution and diversity of PIF-like transposable elements in the Bambusoideae subfamily	Plant Sci.	179(3)	257-266	2010		
33662	14503923	Zhu,Q.H., Hoque,M.S., Dennis,E.S. and Upadhyaya,N.M.	Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L)	BMC Plant Biol.	3	6	2003	_,FZP	BFL1,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1
33663	18438436	Zhu,X.Y., Cai,D.T. and Ding,Y.	Molecular and cytological characterization of 5S rDNA in Oryza species: genomic organization and phylogenetic implications	Genome	51(5)	332-340	2008	R5S1	R5s1*, r5s, R5s1
33664	0	HE Wen-ai, HUANG Da-hui, LI Rong-ba	Identification of a Resistance Gene bls1 to Bacterial Leaf Streak in Wild Rice Oryza rufipogon Griff.	Journal of Integrative Agriculture	11	962-969	2012	BLS1	bls1
33665	21084222	Horie T., Sugawara M., Okada T., Taira K., Kaothien-Nakayama P., Katsuhara M., Shinmyo A., Nakayama H.	Rice sodium-insensitive potassium transporter, OsHAK5, confers increased salt tolerance in tobacco BY2 cells.	J. Biosci. Bioeng.	111(3)	346-56	2011	HAK16,HAK17,LCS,HAK10,HAK11,HAK5,HAK6,HAK2,HAK4,HAK8,HAK9,HAK13,HAK14,HAK15,HAK3,HAK7,HAK12	OsHAK16,OsHAK17, FCO3, FCO4,OsHAK1, HAK1,OsHAK10,OsHAK11,OsHAK5, FCO13, OsFCO13,OsHAK6, OsSTA42,OsHAK2,OsHAK4,OsHAK8,OsHAK9,OsHAK13,OsHAK14,OsHAK15,OsHAK3,OsHAK7,OsHAK12
33666	22399582	Matsubara K., Ogiso-Tanaka E., Hori K., Ebana K., Ando T., Yano M.	Natural Variation in Hd17, a Homolog of Arabidopsis ELF3 That is Involved in Rice Photoperiodic Flowering.	Plant Cell Physiol.	53(4)	709-16	2012	HD3B	Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1
33667	22422935	Saito H., Ogiso-Tanaka E., Okumoto Y., Yoshitake Y., Izumi H., Yokoo T., Matsubara K., Hori K., Yano M., Inoue H., Tanisaka T.	Ef7 Encodes an ELF3-like Protein and Promotes Rice Flowering by Negatively Regulating the Floral Repressor Gene Ghd7 under Both Short- and Long-Day Conditions.	Plant Cell Physiol.	53(4)	717-28	2012	HD3B,SE1,GHD7	Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
33668	21373980	Zeng X., Yang X., Zhao Z., Lin F., Wang L., Pan Q.	Characterization and fine mapping of the rice blast resistance gene Pia.	Sci China Life Sci	54(4)	372-8	2011	PIA	Pi a, Pia, Pi-a, Pia-1, Pia-2
33669	21726398	Delteil A., Blein M., Faivre-Rampant O., Guellim A., Estevan J., Hirsch J., Bevitori R., Michel C., Morel J.B.	Building a mutant resource for the study of disease resistance in rice reveals the pivotal role of several genes involved in defence.	Mol. Plant Pathol.	13(1)	72-82	2012		
33670	18932023	Sakaguchi J, Fukuda H.	Cell differentiation in the longitudinal veins and formation of commissural veins in rice (Oryza sativa) and maize (Zea mays).	J Plant Res.	121(6)	593-602	2008		
33671	22914168	Gamuyao R., Chin J.H., Pariasca-Tanaka J., Pesaresi P., Catausan S., Dalid C., Slamet-Loedin I., Tecson-Mendoza EM., Wissuwa M., Heuer S.	The protein kinase PSTOL1 from traditional rice confers tolerance of phosphorus deficiency.	Nature	488(7412)	535-9	2012	_,_,_,PSTOL1,_	OsPupK20-2,OsPupK04-1,OsPupK05-1,Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPupK29-1
33672	22875749	Shen H., Liu C., Zhang Y., Meng X., Zhou X., Chu C., Wang X.	OsWRKY30 is activated by MAP kinases to confer drought tolerance in rice.	Plant Mol. Biol.	80(3)	241-53	2012	WRKY30	OsWRKY30
33673	22903031	Yeh Y.F., Chang S.C., Kuo H.W., Tong C.G., Yu S.M., Ho T.H.	A metagenomic approach for the identification and cloning of an endoglucanase from rice straw compost.	Gene	519(2)	360-6	2013		
33675	11922106	Y Sato, A Nishimura, M Ito, M Ashikari, H Y Hirano, M Matsuoka	Auxin response factor family in rice.	Genes Genet. Syst.	76(6)	373-80	2001	_,ARF8,ARF6B,ARF6A,ARF7B,ARF16,_,ARF10,_,ARF2,ARF7A	OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,OsARF8, OsARF12, ARF12,OsARF6b, OsARF25, ARF25,OsARF6a, OsARF6, ARF6,OsARF7b, OsARF21,OsARF16, OsARF2, OsARF1,OsARF2, ARF2, OsETT2, ETT2, ARF3a,OsARF10, OsARF18, ARF18,OsMP, OsARF5, OsARF11,OsARF2, OsARF4, ARF4,OsARF7a, OsARF19, ARF19, OsARF7
33676	17408882	Wang D., Pei K., Fu Y., Sun Z., Li S., Liu H., Tang K., Han B., Tao Y.	Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).	Gene	394(1-2)	13-24	2007	ARF17,ARF16,ARF6A,_,ARF24,ARF6B,ARF13,_,ARF20,ARF1,ARF8,ARF8,ARF3,ARF22,ARF16,ARF7B,_,ARF5,ARF14,ARF9,ARF10,ARF2,ARF7A,ARF10,ARF7	OsARF17,OsARF16,OsARF6a, OsARF6, ARF6,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,OsARF24,OsARF6b, OsARF25, ARF25,OsARF13, OsARF12,OsMP, OsARF5, OsARF11,OsARF20,OsARF1, arf1, OsARF23, ARF23,OsARF8, OsARF12, ARF12,OsARF8,OsARF3, ETT3, Os ETT3, OsETT3,OsARF22,OsARF16, OsARF2, OsARF1,OsARF7b, OsARF21,OsARF2, ARF2, OsETT2, ETT2, ARF3a,OsARF5,OsARF14, OsETT4, ETT4,OsARF9,OsARF10, OsARF18, ARF18,OsARF2, OsARF4, ARF4,OsARF7a, OsARF19, ARF19, OsARF7,OsARF10,OsARF7
33677	19193962	Kotb A Attia, Amr F Abdelkhalik, Megahed H Ammar, Wei C., Yang J., David A Lightfoot, Wagih M El-Sayed, Hany A El-Shemy	Antisense phenotypes reveal a functional expression of OsARF1, an auxin response factor, in transgenic rice.	Curr Issues Mol Biol	11 Suppl 1	i29-34	2009	ARF1	OsARF1, arf1, OsARF23, ARF23
33678	21087465	Jun Cheul Ahn, Dae-Won Kim, Young Nim You, Min Sook Seok, Jeong Mee Park, Hwang H., Beom-Gi Kim, Luan S., Hong-Seog Park, Hye Sun Cho	Classification of rice (Oryza sativa L. Japonica nipponbare) immunophilins (FKBPs, CYPs) and expression patterns under water stress.	BMC Plant Biol.	10	253	2010	CYP20-1,_,CYP17,CYP21-4,CYP19-4,_,_,LRT2,_,CYP20-2,CYP18-1,_,_,_,_,_,_,_,CYP20-3,_,CYP63,CYP71,CYP26-2,_,_,_,CYP59A,CYP95,_,_,_,_,_,_,_,CYP18-2,_,CYP18-4,CYP19-3,CYP21-1,CYP22,CYP23,CYP28,CYP37,CYP38,CYP40A,CYP40B,CYP57,CYP59B,CYP65,_,_,_,_,_,_	OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b,OsFKBP62b, OsFKBP65,OsCYP17, OsCYP-4,OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,OsFKBP19,OsFKBP42b,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsFKBP59,OsCYP20-2, OsCYP-11,OsCYP18-1, OsCYP-12,OsFKBP15-2,OsFKBP15-1,OsFKBP57,OsFKBP17-2,OsFKBP17-1,OsFKBP73,OsFKBP53, OsFKBP53b,OsCYP20-3, OsCYP-5,OsFKBP20-1a, OsFKBP20,OsCYP63, OsCYP-18,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsCYP26-2, OsCYP-1, OsCYP26-1,OsFKBP72,OsFKBP16-4,OsFKBP62c, OsFKBP75,OsCYP59a, OsCYP-14, OsCYP59-1,OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b,OsFKBP16-1,OsFKBP16-2,OsFKBP16-3,OsFKBP18,OsFKBP20-1b,OsFKBP42a,OsFKBP44,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsFKBP12, FKBP12,OsCYP18-4, OsCYP-26, OsCYP18-3,OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b,OsCYP21-1, OsCYP-24,OsCYP22, OsCYP-10,OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c,OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d,OsCYP37, OsCYP37a, OsCYP37b,OsCYP38, OsCYP38a, OsCYP38b,OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b,OsCYP40b, OsCYP-8, OsCYP40-2,OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b,OsCYP59b, OsCYP-15, OsCYP59-2,OsCYP65, OsCYP-9,OsTIG,OsFKBP58, OsFKBP53a, BIP122,OsFKBP20-2, FKBP20-2,OsFKBP46, FKBP46,OsFKBP62a, OsFKBP64,OsFKBP13
33681	21904112	Shimada T.L., Ogawa Y., Shimada T., Hara-Nishimura I.	A non-destructive screenable marker, OsFAST, for identifying transgenic rice seeds	Plant Signaling and Behavior	6	1454-1456	2011		
33682	22548273	Takahashi R., Ishimaru Y., Shimo H., Ogo Y., Senoura T., Nishizawa N.K., Nakanishi H.	The OsHMA2 transporter is involved in root-to-shoot translocation of Zn and Cd in rice.	Plant Cell Environ.	35(11)	1948-57	2012	HMA2,SUT1	OsHMA2, osHMA2, OsHMA2v ,OsSUT1, OsSUT2
33683	21108023	Ardie S.W., Nishiuchi S., Liu S., Takano T.	Ectopic expression of the K+ channel beta subunits from Puccinellia tenuiflora (KPutB1) and rice (KOB1) alters K+ homeostasis of yeast and Arabidopsis.	Mol. Biotechnol.	48(1)	76-86	2011	_,_	KOB1,OsAKT1, Os-AKT1, AKT1
33684	21670506	Oda K., Otani M., Uraguchi S., Akihiro T., Fujiwara T.	Rice ABCG43 is Cd inducible and confers Cd tolerance on yeast.	Biosci. Biotechnol. Biochem.	75(6)	1211-3	2011		
33687	0	Hirose T., Mizutani R., Mitsui T., Terao T.	A chemically inducible gene expression system and its application to inducible gene suppression in rice	Plant Prod. Sci.	15	73-78	2012	SPS1	sps1, OsSPS1, SPS
33688	22528669	Takahashi S., Kimura S., Kaya H., Iizuka A., Wong H.L., Shimamoto K., Kuchitsu K.	Reactive oxygen species production and activation mechanism of the rice NADPH oxidase OsRbohB.	J. Biochem.	152(1)	37-43	2012	RBOHB	rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB 
33689	22526427	Nuruzzaman M., Sharoni A.M., Satoh K., Moumeni A., Venuprasad R., Serraj R., Kumar A., Leung H., Attia K., Kikuchi S.	Comprehensive gene expression analysis of the NAC gene family under normal growth conditions, hormone treatment, and drought stress conditions in rice using near-isogenic lines (NILs) generated from crossing Aday Selection (drought tolerant) and IR64.	Mol. Genet. Genomics	287(5)	389-410	2012	TMS5,NAC3,NAC24,NAC96	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,NAC94, ONAC024, ONAC24,NAC94, ONAC096, ONAC96, NAC4, OsNAC4
33690	22644443	Kakei Y., Ishimaru Y., Kobayashi T., Yamakawa T., Nakanishi H., Nishizawa N.K.	OsYSL16 plays a role in the allocation of iron.	Plant Mol. Biol.	79(6)	583-94	2012	YSL18,YSL16,YSL15,YSL2	OsYSL18, OsYs2 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL15, OsYs7,OsYSL2, Os-YSL2, OsYs6 
33691	22626555	Shindo H., Suzuki R., Tsuchiya W., Taichi M., Nishiuchi Y., Yamazaki T.	PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2.	FEBS Lett.	586(13)	1783-9	2012	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 
33692	22751305	Kurusu T., Iida H., Kuchitsu K.	Roles of a putative mechanosensitive plasma membrane Ca ( 2+) -permeable channel OsMCA1 in generation of reactive oxygen species and hypo-osmotic signaling in rice.	Plant Signal Behav	7(7)	1-3	2012	_	OsMCA1
33693	22732245	Chen Z.C., Yamaji N., Motoyama R., Nagamura Y., Ma J.F.	Up-Regulation of a Magnesium Transporter Gene OsMGT1 Is Required for Conferring Aluminum Tolerance in Rice.	Plant Physiol.	159(4)	1624-33	2012	_,ART1	OsMGT1, OsMRS2-2,ART1, STAR3
33694	22751306	Ishimaru Y., Bashir K., Nakanishi H., Nishizawa N.K.	OsNRAMP5, a major player for constitutive iron and manganese uptake in rice.	Plant Signal Behav	7(7)	1-4	2012	NRAMP5	OsNRAMP5, OsNramp5
33695	22681566	Izawa T.	Physiological significance of the plant circadian clock in natural field conditions.	Plant Cell Environ.	35(10)	1729-41	2012	LHY,GI,TOC1	LHY, Os-LHY, OsLHY,OsGI, Gi, Os-GI,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
33696	22683629	Nuruzzaman M., Sharoni A.M., Satoh K., Al-Shammari T., Shimizu T., Sasaya T., Omura T., Kikuchi S.	The thioredoxin gene family in rice: Genome-wide identification and expression profiling under different biotic and abiotic treatments.	Biochem. Biophys. Res. Commun.	423(2)	417-23	2012		
33697	22764280	Hirose F., Inagaki N., Hanada A., Yamaguchi S., Kamiya Y., Miyao A., Hirochika H., Takano M.	Cryptochrome and Phytochrome Cooperatively but Independently Reduce Active Gibberellin Content in Rice Seedlings under Light Irradiation.	Plant Cell Physiol.	53(9)	1570-82	2012	_,GA2OX7,GA20OX4,_,GA3OX1,GA2OX8,GA2OX2,GA20OX3,GA2OX1,GA2OX5,GA2OX6,GA2OX10,GID1,_,GA2OX9,GID2,GA2OX3,GA20OX1,SLR1,SD1,SBI	OsCRY1a, OsCRY1, CRY1a, CRY2 ,OsGA2ox7,OsGA20ox4, ga20ox4,OsCRY1b, OsCRY2, CRY1b, CRY1 ,OsGA3ox1, GA3ox1, OsGA3OX1,OsGA2ox8,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsGA20ox3, ga20ox3,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA2ox6,OsGA2ox10,gid1, OsGID1, Thl, Os GID1,OsCRY2, CRY2,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4
33698	22824965	Wakasa Y., Hayashi S., Takaiwa F.	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice.	Planta	236(5)	1519-27	2012	_,_,IRE1,BZIP50,_,_,_	OsBiP2, Bip2,OsBiP3, BiP3,IRE1, OsIRE1, OsIre1,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
33699	22843988	Umezu N., Umeki N., Mitsui T., Kondo K., Maruta S.	Rice kinesin O12 is identical to kinesin OsKCH1.	J. Biochem.	152(2)	207-8	2012	_	OsKCH1, KCH1, OsKCH, KCH, O12
33702	0	Vu H.T.T., Manangkil O.E., Mori N., Yoshida S., Nakamura C.	Induction and repression of gene expression mediating ethylene biosynthesis and sodium/proton exchange in rice seedlings under submergence stress	Biotechnology and Biotechnological Equipment	26	2945-2951	2012	ACS3,ACO7,NHX5,ACO4,ACO2,NHX4,ACO5,ACO3,ACS4,ACO1,ACS5,NHX1,ACS2,ACS1	ACC3*, ACC3, OsACS3, OS-ACS3,OsACO7,OsNHX5,OsACO4,OsACO2,OsNHX4,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsACO3,OsACS4, OS-ACS4,OsACO1, ACO,OsACS5, OS-ACS5, OsBphi008a,OsNHX1,OsACS2, Os-ACS2,ACC1*, OsACS1, Os-ACS1, ACC1
33706	0	Teramura H., Enomoto Y., Aoki H., Sasaki T., Shimada H.	A long 5 UTR of the rice OsMac1 mRNA enabling the sufficient translation of the downstream ORF	Plant Biotechnology	29	43-49	2012	_	OsMac1
33707	22891159	Shinya T., Motoyama N., Ikeda A., Wada M., Kamiya K., Hayafune M., Kaku H., Naoto S.	Functional characterization of CEBiP and CERK1 homologs in Arabidopsis and rice reveals the presence of different chitin receptor systems in plants.	Plant Cell Physiol.	53(10)	1696-706	2012	CEBiP,_	CEBIP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9
33708	22915302	Higo H., Tahir M., Takashima K., Miura A., Watanabe K., Tagiri A., Ugaki M., Ishikawa R., Eiguchi M., Kurata N., Sasaki T., Richards E., Takano M., Kishimoto N., Kakutani T., Habu Y.	DDM1 (Decrease in DNA Methylation) genes in rice (Oryza sativa).	Mol. Genet. Genomics	287(10)	785-92	2012	_,_	OsDDM1b, DDM1b, DDM1,OsDDM1a, DDM1a
33709	22824965	Wakasa Y., Hayashi S., Takaiwa F.	Expression of OsBiP4 and OsBiP5 is highly correlated with the endoplasmic reticulum stress response in rice	Planta	236(5)	1519-27	2012		
33711	21429786	Miura K., Ashikari M., Matsuoka M.	The role of QTLs in the breeding of high-yielding rice.	Trends Plant Sci.	16(6)	319-26	2011	GW5,APO1,GHD7,HD5	qSW5/GW5, GSE5,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
33713	20934370	Hattori Y., Nagai K., Ashikari M.	Rice growth adapting to deepwater	Curr. Opin. Plant Biol.	14	100-105	2011		
33714	21429786	Miura K., Ashikari M., Matsuoka M.	The role of QTLs in the breeding of high-yielding rice	Trends Plant Sci.	16	319-326	2011		
33715	21873330	Ishida S., Morita K., Kishine M., Takabayashi A., Murakami R., Takeda S., Shimamoto K., Sato F., Endo T.	Allocation of absorbed light energy in PSII to thermal dissipations in the presence or absence of PsbS subunits of rice.	Plant Cell Physiol.	52(10)	1822-31	2011		
33716	21914655	Yoshida H., Nagato Y.	Flower development in rice.	J. Exp. Bot.	62(14)	4719-30	2011		
33717	21910771	Ikeda-Kawakatsu K., Maekawa M., Izawa T., Itoh J.I., Nagato Y.	ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1.	Plant J.	69(1)	168-80	2012	RFL	RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 
33718	21947007	Navarro C., Abelenda J.A., Cruz-Or? E., Cu?llar CA., Tamaki S., Silva J., Shimamoto K., Prat S.	Control of flowering and storage organ formation in potato by FLOWERING LOCUS T.	Nature	478(7367)	119-22	2011	HD3A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
33719	22301968	Tanaka N., Itoh J., Nagato Y.	Role of rice PPS in late vegetative and reproductive growth.	Plant Signal Behav	7(1)	50-2	2012		
33720	22476293	Mimura M., Nagato Y., Itoh J.I.	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway.	Planta	235(5)	1081-9	2012	SD1,SLR1,PLA1,GA2OX3,PLA2	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,pla1, OsPLA1, plt1, CYP78A11,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,pla2, pla2(pla2-1, pla2-2), plt2, LHD2
33721	22429711	Hirano K., Kouketu E., Katoh H., Aya K., Ueguchi-Tanaka M., Matsuoka M.	The Suppressive Function of the Rice DELLA Protein SLR1 is Dependent on its Transcriptional Activation Activity.	Plant J.	71(3)	443-53	2012	GID2,SLR1,GID1	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,gid1, OsGID1, Thl, Os GID1
33722	22419825	Yano K., Takashi T., Nagamatsu S., Kojima M., Sakakibara H., Kitano H., Matsuoka M., Aya K.	Efficacy of Microarray Profiling Data Combined with QTL Mapping for the Identification of a QTL Gene Controlling the Initial Growth Rate in Rice.	Plant Cell Physiol.	53(4)	729-39	2012		
33723	21952207	Takahashi Y., Shimamoto K.	Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selectionduring domestication to diversify floweringtimes of cultivated rice	Genes and Genetic Systems	86	175-182	2011	SE1,HD3A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
33724	22574770	Sato-Izawa K., Nakaba S., Tamura K., Yamagishi Y., Nakano Y., Nishikubo N., Kawai S., Kajita S., Ashikari M., Funada R., Katayama Y., Kitano H.	DWARF50 (d50), a rice (Oryza sativa L.) gene encoding inositol polyphosphate 5-phosphatase, is required for proper development of intercalary meristem.	Plant Cell Environ.	35(11)	2031-44	2012	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
33727	22476293	Mimura M., Nagato Y., Itoh J.I.	Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway	Planta	235	1081-1089	2012		
33728	24764503	Shen Q.J., Yu D., Jeon J.S., Piffanelli P., Abbruscato P., Guo Z.J., Zhang Y., Itoh T., Lee S.S., Buell C.R., Nagato Y., McCouch S., Yano M., Wang G.-l., Jena K.K., Xiong L., Meyers B., Jaiswal P., Yamazaki Y.	Nomenclature report on rice WRKYs - conflict regarding gene names and its solution	Rice (N Y)	5	3	2012		
33730	22889403	Itoh J.I., Hibara K.I., Kojima M., Sakakibara H., Nagato Y.	Rice DECUSSATE controls phyllotaxy by affecting the cytokinin signaling pathway.	Plant J.	72	869-881	2012	_,RR5,RR6,OSH1	DEC,rr5, OsRR5, Rra4, OsRRA4,OsRR6, rr6, Rra6, OsRRA6,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
33732	0	Inukai Y., Sakamoto T., Morinaka Y., Miwa M., Kojima M., Tanimoto E., Yamamoto H., Sato K., Katayama Y., Matsuoka M., Kitano H.	ROOT GROWTH INHIBITING, a Rice Endo-1,4--d-Glucanase, Regulates Cell Wall Loosening and is Essential for Root Elongation	J. Plant Growth Regul.	31	373-381	2012		
33733	21338950	Sun C., Liu L., Tang J., Lin A., Zhang F., Fang J., Zhang G., Chu C.	RLIN1, encoding a putative coproporphyrinogen III oxidase, is involved in lesion initiation in rice	Journal of Genetics and Genomics	38	29-37	2011	RLIN1	CPO, CPOX, LLM1, HEMF
33734	21793954	Manosalva P.M., Bruce M., Leach J.E.	Rice 14-3-3 protein (GF14e) negatively affects cell death and disease resistance.	Plant J.	68(5)	777-87	2011	POX3006,POX22.3,GID2	POX3006, prx114, PO-C1, POC-1, POC1,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e
33735	22369597	Lorieux M., Blein M., Lozano J., Bouniol M., Droc G., Di?vart A., P?rin C., Mieulet D., Lanau N., B?s M., Rouvi?re C., Gay C., Piffanelli P., Larmande P., Michel C., Barnola I., Biderre-Petit C., Sallaud C., Perez P., Bourgis F., Ghesqui?re A., Gantet P., Tohme J., Morel J.B., Guiderdoni E.	In-depth molecular and phenotypic characterization in a rice insertion line library facilitates gene identification through reverse and forward genetics approaches.	Plant Biotechnol. J.	10(5)	555-68	2012		
33737	0	Sun F., Qi W., Qian X., Wang Q., Yang M., Dong X., Yang J.	Investigating the Role of OsPDCD5, a Homolog of the Mammalian PDCD5, in Programmed Cell Death by Inducible Expression in Rice	Plant Molecular Biology Reporter	30	87-98	2012	_,_,HSP16.9C	OsPDCD5, PDCD5,OsBI-1, OsBI1, BI1,Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C
33738	22388489	Vega-Sanchez ME, Verhertbruggen Y, Christensen U, Chen X, Sharma V, Varanasi P, Jobling SA, Talbot M, White RG, Joo M, Singh S, Auer M, Scheller HV, Ronald PC.	Loss of Cellulose Synthase-Like F6 Function Affects Mixed-Linkage Glucan Deposition, Cell Wall Mechanical Properties, and Defense Responses in Vegetative Tissues of Rice	Plant Physiol.	159	56-69	2012		
33739	0	Ma J.Y., Chen S.L., Zhang J.H., Dong Y.J., Teng S.	Identification and Genetic Mapping of a lesion mimic Mutant in Rice	Rice Science	19	1-7	2012		
33740	0	Wang X. S., Zhu H. B., Jin G. L., Liu H. L., Wu W. R., Zhu J.	Genome-scale identification and analysis of LEA genes in rice (Oryza sativa L.)	Plant Science	172	414-420	2007	LEA24,LEA31,LEA4,RAB16B,EM,WSI18,LEA3-1,LEA33,LEA1,LEA34,LEA8,LEA30,RAB16D,LEA6,LEA20,RAB16A,LEA2,LEA10,LEA11,LEA12,LEA13,LEA15,LEA18,LEA16,LEA7,LEA32,LEA3,LEA14,LEA17,DHN6,DHN1,LEA22,RAB16C,LEA9	OsLEA24, WSI724,OsLEA31,OsLEA4,rab21, OsLEA28, OsRAB16D, OsRAB16b,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsLEA33, D34, OsEnS-85,OsLEA1,OsLEA34,OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5,OsLEA30, OsEnS-43,rab21, OsLEA26, Rab16D, OsRab16,OsLEA6,OsLEA20, OsLEA1, OsLEA1a,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA2, OsLEA4,OsLEA10,OsLEA11,OsLEA12,OsLEA13,OsLEA15,OsLEA18,OsLEA16,OsLEA7, OsLEA7a, OsLEA7b, OsLEA7c,OsLEA32, OsEnS-55,OsLEA3, OsEnS-84,Lea14A, OsLEA5, OsEnS-2,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,rab21, OsLEA27, rab16C,OsLEA9, OsLEA5, LEA5
33741	8650152	C R Anderson, E O Jensen, D J LLewellyn, E S Dennis, W J Peacock	A new hemoglobin gene from soybean: a role for hemoglobin in all plants.	Proc. Natl. Acad. Sci. U.S.A.	93(12)	5682-7	1996	Hb1	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
33742	22142166	Yamaguchi K., Imai K., Akamatsu A., Mihashi M., Hayashi N., Shimamoto K., Kawasaki T.	SWAP70 functions as a Rac/Rop guanine nucleotide-exchange factor in rice.	Plant J.	70(3)	389-97	2012	RAC4,RAC5,RAC1,RAC3,RAC6,_,RAC2,RAC7,_,_	OsRAC4, OsRac4, ROP4, OsRop4,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRac3,OsRacB, RacB, OsRac6,PBZ1,OsRAC2, OsRac2,OSRAC7, OsRac7, ROP5, OsRop5,OsSWAP70A, SWAP70A,OsSWAP70B, SWAP70B, SIP21
33743	18931976	Degenkolbe T., Phuc Thi Do, Zuther E., Repsilber D., Walther D., Dirk K Hincha, Karin I K?hl	Expression profiling of rice cultivars differing in their tolerance to long-term drought stress.	Plant Mol. Biol.	69(1-2)	133-53	2009	_	gp1
33744	20091079	Kumar M., P Osman Basha, Puri A., Rajpurohit D., Gursharn Singh Randhawa, Tilak Raj Sharma, Harcharan Singh Dhaliwal	A candidate gene OsAPC6 of anaphase-promoting complex of rice identified through T-DNA insertion.	Funct. Integr. Genomics	10(3)	349-58	2010	_	OsAPC6, APC6
33745	0	Hong C.Y., Chao Y.Y., Yang M.Y., Cheng S.Y., Cho S.C., Huei Kao C.	NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid	Plant Soil	320	103-115	2009	_,_,APX8,RAB16A,_	OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsGR3, GR3,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsGR1, GR1, OsGR2
33746	0	Morita S, Kaminaka H, Masumura T, Tanaka K	Induction of Rice Cytosolic Ascorbate Peroxidase mRNA by Oxidative Stress; the Involvement of Hydrogen Peroxide in Oxidative Stress Signalling	Plant Cell Physiol.	40(4)	417-422	1999	APX1	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
33747	12559953	Jung-A Kim, Ganesh K Agrawal, Rakwal R., Keon Seon Han, Kyung-Nam Kim, Choong-Hyo Yun, Heu S., Sook-Young Park, Yong-Hwan Lee, Nam-Soo Jwa	Molecular cloning and mRNA expression analysis of a novel rice (Oryzasativa L.) MAPK kinase kinase, OsEDR1, an ortholog of Arabidopsis AtEDR1, reveal its role in defense/stress signalling pathways and development.	Biochem. Biophys. Res. Commun.	300(4)	868-76	2003	ACDR1	OsEDR1, OsACDR1, EDR1
33748	19904499	Jung-A Kim, Cho K., Singh R., Young-Ho Jung, Seung-Hee Jeong, So-Hee Kim, Jae-Eun Lee, Yoon-Seong Cho, Ganesh K Agrawal, Rakwal R., Tamogami S., Kersten B., Jong-Seong Jeon, An G., Nam-Soo Jwa	Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance.	Mol. Cells	28(5)	431-9	2009	ACDR1	OsEDR1, OsACDR1, EDR1
33749	15749763	Kawagoe Y., Suzuki K., Tasaki M., Yasuda H., Akagi K., Katoh E., Naoko K Nishizawa, Ogawa M., Takaiwa F.	The critical role of disulfide bond formation in protein sorting in the endosperm of rice.	Plant Cell	17(4)	1141-53	2005	GLB1,_	glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26
33750	11272832	H Nakashita, K Yoshioka, M Takayama, R Kuga, N Midoh, R Usami, K Horikoshi, K Yoneyama, I Yamaguchi	Characterization of PBZ1, a probenazole-inducible gene, in suspension-cultured rice cells.	Biosci. Biotechnol. Biochem.	65(1)	205-8	2001	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33751	19129653	Uchiyama R., Aoki K., Sugimoto H., Taka N., Katayama T., Itonori S., Sugita M., Fang-Sik Che, Kumagai H., Yamamoto K.	Phosphocholine-containing glycosyl inositol-phosphoceramides from Trichoderma viride induce defense responses in cultured rice cells.	Biosci. Biotechnol. Biochem.	73(1)	74-8	2009	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33752	19966496	Yasuda M., Isawa T., Shinozaki S., Minamisawa K., Nakashita H.	Effects of colonization of a bacterial endophyte, Azospirillum sp. B510, on disease resistance in rice.	Biosci. Biotechnol. Biochem.	73(12)	2595-9	2009	PR4,PR1B,PR1A,WRKY45,PR10A	OsPR4, OsPR4a, PR4a, OsPR-4,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsWRKY45,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33753	12744513	Tanaka N., Fang-Sik Che, Watanabe N., Fujiwara S., Takayama S., Isogai A.	Flagellin from an incompatible strain of Acidovorax avenae mediates H2O2 generation accompanying hypersensitive cell death and expression of PAL, Cht-1, and PBZ1, but not of Lox in rice.	Mol. Plant Microbe Interact.	16(5)	422-8	2003	PR10A,PAL1,CHT1	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1
33754	11437261	J D McGee, J E Hamer, T K Hodges	Characterization of a PR-10 pathogenesis-related gene family induced in rice during infection with Magnaporthe grisea.	Mol. Plant Microbe Interact.	14(7)	877-86	2001	PR10B,PR10A,PR10C	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,RPR10c, PR-10c, PR10c
33755	16673937	Lucie Mich??, Battistoni F., Gemmer S., Belghazi M., Barbara Reinhold-Hurek	Upregulation of jasmonate-inducible defense proteins and differential colonization of roots of Oryza sativa cultivars with the endophyte Azoarcus sp.	Mol. Plant Microbe Interact.	19(5)	502-11	2006	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
33756	22215597	Anders N., Wilkinson M.D., Lovegrove A., Freeman J., Tryfona T., Pellny T.K., Weimar T., Mortimer J.C., Stott K., Baker J.M., Defoin-Platel M., Shewry P.R., Dupree P., Mitchell R.A.	Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses.	Proc. Natl. Acad. Sci. U.S.A.	109(3)	989-93	2012	XAT2,XAT3	OsXAT2,OsXAT3
33757	22711282	Mulangi V., Chibucos M.C., Phuntumart V., Morris P.F.	Kinetic and phylogenetic analysis of plant polyamine uptake transporters.	Planta	236(4)	1261-73	2012	PUT1,PUT3,PUT2	OsPUT1, PUT, OsLAT1 ,OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 ,OsPUT2, OsLAT7 
33758	21505434	Ogawa D., Abe K., Miyao A., Kojima M., Sakakibara H., Mizutani M., Morita H., Toda Y., Hobo T., Sato Y., Hattori T., Hirochika H., Takeda S.	RSS1 regulates the cell cycle and maintains meristematic activity under stress conditions in rice.	Nat Commun	2	278	2011	RSS1	
33759	23041461	Ogawa D., Morita H., Hattori T., Takeda S.	Molecular characterization of the rice protein RSS1 required for meristematic activity under stressful conditions.	Plant Physiol. Biochem.	61C	54-60	2012	RSS1	
33760	22984070	Yang J., Zhao X., Cheng K., Du H., Ouyang Y., Chen J., Qiu S., Huang J., Jiang Y., Jiang L., Ding J., Wang J., Xu C., Li X., Zhang Q.	A killer-protector system regulates both hybrid sterility and segregation distortion in rice.	Science	337(6100)	1336-40	2012	S5,_,BZIP50,_,CP1	S5-3, S5-4,Hsr203j, OsHsr203j,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsBI-1, OsBI1, BI1,OsCP1, Os CP1
33761	17763868	Kang S., Kang K., Lee K., Back K.	Characterization of rice tryptophan decarboxylases and their direct involvement in serotonin biosynthesis in transgenic rice.	Planta	227(1)	263-72	2007	TDC2,TYDC,TDC1	OsTDC2,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3,OsTDC, TDC2, OsTDC1
33762	20978800	Young Soon Kim, Park S., Kang K., Lee K., Back K.	Tyramine accumulation in rice cells caused a dwarf phenotype via reduced cell division.	Planta	233(2)	251-60	2011		
33763	16371241	Hartung F., Puchta H.	The RecQ gene family in plants.	J. Plant Physiol.	163(3)	287-96	2006	-	OsRecQ1
33764	20086189	Li H., Pinot F., Sauveplane V., Dani?Nle Werck-Reichhart, Diehl P., Schreiber L., Franke R., Zhang P., Chen L., Gao Y., Liang W., Zhang D.	Cytochrome P450 family member cyp704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice.	Plant Cell	22(1)	173-90	2010	CYP704B2	OsCYP704B2
33765	12692345	Griffiths S., Roy P Dunford, Coupland G., David A Laurie	The evolution of CONSTANS-like gene families in barley, rice, and Arabidopsis.	Plant Physiol.	131(4)	1855-67	2003	-,-,-,-,_,-,-,_,_,_,_,_,_,SE1,_,_	OsK,OsM,OsO,OsI,OsP, OsBBX9, OsCCT12, BBX9, CCT12,OsJ,OsL,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2,OsCCT35, OsCMF11, OsH ,OsBBX25, OsG, OsCCT29, BBX25, CCT29,OsBBX3, OsF, OsCCT05, BBX3, CCT05,OsBBX12, OsC, OsCCT16, BBX12, CCT16,OsBBX20, OsE, OsCCT23, BBX20, CCT23,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06
33766	19400948	Hemant R Kushwaha, Anil K Singh, Sudhir K Sopory, Sneh L Singla-Pareek, Pareek A.	Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation.	BMC Genomics	10	200	2009	_,_,_,_,_,_,_,_,_,CBSCLC2,CBSCLC4,CBSCLC5,CBSCLC6,CBSCLC7,CBSCLC8,CBSCLC9,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CBSCLC3,_,_,CBSCLC1,CBSCLC10,_	OsCBSX2,OsCBSX3, OsCBSX3a, OsCBSX3b, OsCBSX3c, OsCBSX3d, OsCBSX3e,OsCBSX5,OsCBSX6,OsCBSX8,OsCBSX9,OsCBSX11,OsCBSX10,OsCBSX12,OsCBSCLC2,OsCBSCLC4,OsCBSCLC5,OsCBSCLC6, OsCBSCLC6a, OsCBSCLC6b,OsCBSCLC7,OsCBSCLC8,OsCBSCLC9, OsCBSCLC9a, OsCBSCLC9b,OsCBSDUFCH1, OsCBSDUFCH1a, OsCBSDUFCH1b,OsCBSDUF1, OsCBSDUF1a, OsCBSDUF1b,OsCBSDUF2,OsCBSPPR1,OsCBSX7, OsCBSX7a, OsCBSX7b, OsCBSCBS1,OsCBSCBS2,OsCBSCBS3,OsCBSCBS5,OsCBSCBSPB1,OsCBSCBSPB2,OsCBSCBSPB3,OsCBSSIS1,OsCBSX4, OsCBSX4a, OsCBSX4b, OsCBSX4c, OsCBSX4d, OsCBSX4e, OsCBSX4f,OsCBSCBS4, OsCBSCBS4a, OsCBSCBS4b, OsCBSCBS4c, OsCBSCBS4d, OsCBSCBS4e,OsCBSDUF3, OsSTA88,OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1 ,OsCBSX1, Cen8.t00941,OsCBSCBSPB4, CBSCBSPB4,OsCBSCLC1,OsCBSCLC10, OsCBSCLC10a, OsCBSCLC10b,CBSIMPDH1, OsCBSIMPDH1, OsCBSIMPDH1a, OsCBSIMPDH1b, IMPDH, OsIMPDH
33767	20128882	Shou-Qiang Ouyang, Yun-Feng Liu, Liu P., Lei G., Si-Jie He, Ma B., Wan-Ke Zhang, Jin-Song Zhang, Shou-Yi Chen	Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants.	Plant J.	62(2)	316-29	2010	SIK1	OsSIK1, OsER2, ER2, OsERL, ERL
33768	0	Mackill D.J., Bonman J.B.	Inheritance of Blast Resistance in Near-lsogenic Lines of Rice	Phytopathology	82(7)	746-749	1992		
33769	0	Kinoshita T., Inukai T., Toriyama K.	IV. Reports from coordinators 1) Gene symbols for blast resistance newly revised	RGN	11	16-17	1994	PI1,PI3,PITA,PI11,PIZ5,PIZ	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33770	11361341	Wang Z., Taramino G., Yang D., Liu G., Tingey S.V., Miao G.H., Wang G.L.	Rice ESTs with disease-resistance gene- or defense-response gene-like sequences mapped to regions containing major resistance genes or QTLs.	Mol. Genet. Genomics	265(2)	302-10	2001	PIA	Pi a, Pia, Pi-a, Pia-1, Pia-2
33771	18838789	Kishine M., Nakamura S., Matsukura U., Ohtsubo K.	Cultivar identification of Korean rice based on DNA markers for blast resistance.	Biosci. Biotechnol. Biochem.	72(10)	2767-9	2008	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33772	18943771	Zhu M., Wang L., Pan Q.	Identification and characterization of a new blast resistance gene located on rice chromosome 1 through linkage and differential analyses.	Phytopathology	94(5)	515-9	2004	PID2,PI25,PI27,PISH,PIT	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t),Pi25(t), Pi-25(t), RMg62,Pi27, Pi27(t), Pi-27(t),Pi sh, Pish, Pi-sh, Pish(t),Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
33773	16404154	Kim H.K., Lee S.K., Cho J.I., Lee S., An G., Jwa N.S., Kim B.R., Cho Y.C., Han S.S., Bhoo S.H., Lee Y.H., Hong Y.K., Yi G., Park D.S., Hahn T.R., Jeon J.S.	Characterization of rice mutants with enhanced susceptibility to rice blast.	Mol. Cells	20(3)	385-91	2005	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33774	12168952	Sirithunya P., Tragoonrung S., Vanavichit A., Pa-In N., Vongsaprom C., Toojinda T.	Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice (Oryza sativa).	DNA Res.	9(3)	79-88	2002	PI22	Pi22, Pi-22, Pi 22
33775	20478538	Kawano Y., Akamatsu A., Hayashi K., Housen Y., Okuda J., Yao A., Nakashima A., Takahashi H., Yoshida H., Wong H.L., Kawasaki T., Shimamoto K.	Activation of a Rac GTPase by the NLR family disease resistance protein Pit plays a critical role in rice innate immunity.	Cell Host Microbe	7(5)	362-75	2010	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
33776	19271956	Li W., Wang B., Wu J., Lu G., Hu Y., Zhang X., Zhang Z., Zhao Q., Feng Q., Zhang H., Wang Z., Wang G., Han B., Wang Z., Zhou B.	The Magnaporthe oryzae avirulence gene AvrPiz-t encodes a predicted secreted protein that triggers the immunity in rice mediated by the blast resistance gene Piz-t.	Mol. Plant Microbe Interact.	22(4)	411-20	2009	PIZT	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
33777	18533827	Ballini E., Morel J.B., Droc G., Price A., Courtois B., Notteghem J.L., Tharreau D.	A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance.	Mol. Plant Microbe Interact.	21(7)	859-68	2008	PI37,PI24,PI13,PI35,PIY1,PITQ5,IPI,IPI3,PIX,PIKUR1,PI21,PII2,PI25,PI15,PI23,PIF,PIIS1,PI34,PI22,PIKUR2,PISE1,PI5,PI36,PB1,PI21,PI33,PIKM,PI9,PISH,PIK,PIT,PI6,PI11,PI7,PI8,PI26,PI10,PI20,PITP,PI24,PI25,PI27,PI27,PI39,PI44,PI12,PIQ1,PI26,PIM,PIY2,PITQ6,PI12,PI13,PI14,PI14,PI16,PI17,PI18,PI28,PI29,PI30,PI31,PI32,PI38,PIG,PI25,PI62,PIKS,PID1,PICO39,PIA,PIKP,PI1,PID2,PIKH,PIZT,PIGM,PITA,PIB,PIZ,PI3	Pi37(t), Pi37,Pi24, Pi24(t),Pi13(t), Pi13(t)*, Pi13,Pi35(t),Pi-y1(t), Pi-y(t), Piy1(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,IPi(t)*, IPi. Rmg56,IPi3(t)*, IPi3, Rmg57,Pi-x(t), Pi-x1,Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi i2, Pii2, Pii2(t),Pi25(t), Pi-25(t), RMg62,Pi15(t), Pi15, RMg34.,Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi f, PIF, Pif, RMg3, Pi-f,Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi34, RMg71, Pi24(t),Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi36(t), Pi36,Pb1, Pbst, RMG58.,pi21, rMg40,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi sh, Pish, Pi-sh, Pish(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi7, Pi-7(t), Pi7(t),Pi8, Pi-8,Pi26(t), Pi26,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi20, Pi20(t),Pi-tp(t), Pitp(t), Pi-tp,Pi24(t), Pi-24(t), Pi-24, Pi24,Pi25(t), Pi-25(t),Pi27(t), Pi-27(t),Pi27, Pi27(t), Pi-27(t),Pi39(t), Pi39,Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi26(t), Pi-26(t),Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi-tq6, Pitq6,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pi14(t), Pi14(t)*, Pi14,Pi16(t), Pi16, Pi-16(t),Pi17(t), Pi17, Pi-17(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi28(t), Pi-28(t),Pi-29(t), Pi29(t),Pi-30(t), Pi30(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi-32(t), Pi32(t)*, Pi32(t),Pi38, Pi-38,Pi-g(t),Pi25, Pi25(t),Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi-ks, Pi-s, Pik-s, Piks,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pi a, Pia, Pi-a, Pia-1, Pia-2,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t),Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Pigm(t), Pi-gm(t), Pigm,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
33778	18944889	Hayashi N., Ando I., Imbe T.	Identification of a new resistance gene to a chinese blast fungus isolate in the Japanese rice cultivar aichi asahi.	Phytopathology	88(8)	822-7	1998	PI19,PITA	Pi19(t), Pi14, Pi19,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33779	19594308	Wang L., Xu X., Lin F., Pan Q.	Characterization of rice blast resistance genes in the Pik cluster and fine mapping of the Pik-p locus.	Phytopathology	99(8)	900-5	2009	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33780	15716503	Wisser R.J., Sun Q., Hulbert S.H., Kresovich S., Nelson R.J.	Identification and characterization of regions of the rice genome associated with broad-spectrum, quantitative disease resistance.	Genetics	169(4)	2277-93	2005		
33781	18944075	Jia Y., Bryan G.T., Farrall L., Valent B.	Natural Variation at the Pi-ta Rice Blast Resistance Locus.	Phytopathology	93(11)	1452-9	2003	PI6,PITA	Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33782	22355686	Nakao M., Nakamura R., Kita K., Inukai R., Ishikawa A.	Non-host resistance to penetration and hyphal growth of Magnaporthe oryzae in Arabidopsis.	Sci Rep	1	171	2011	PI21	pi21, rMg40
33783	15319478	B?hnert HU., Fudal I., Dioh W., Tharreau D., Notteghem J.L., Lebrun M.H.	A putative polyketide synthase/peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice.	Plant Cell	16(9)	2499-513	2004	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33786	18433432	Collemare J., Pianfetti M., Houlle A.E., Morin D., Camborde L., Gagey M.J., Barbisan C., Fudal I., Lebrun M.H., B?hnert HU.	Magnaporthe grisea avirulence gene ACE1 belongs to an infection-specific gene cluster involved in secondary metabolism.	New Phytol.	179(1)	196-208	2008	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33787	17115220	Chen Q.H., Wang Y.C., Li A.N., Zhang Z.G., Zheng X.B.	Molecular mapping of two cultivar-specific avirulence genes in the rice blast fungus Magnaporthe grisea.	Mol. Genet. Genomics	277(2)	139-48	2007	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
33789	12582534	Tabien E., Li Z., Paterson H., Marchetti A., Stansel W., Pinson M.	Mapping QTLs for field resistance to the rice blast pathogen and evaluating their individual and combined utility in improved varieties.	Theor. Appl. Genet.	105(2-3)	313-324	2002	PITQ6,PILM2,PITQ5,PIQ1	Pi-tq6, Pitq6,Pi-lm2, Pilm2, Pi lm2, Pib2,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1
33790	17333252	Stoimenova M., Igamberdiev A.U., Gupta K.J., Hill R.D.	Nitrite-driven anaerobic ATP synthesis in barley and rice root mitochondria.	Planta	226(2)	465-74	2007		
33791	15141293	Yi G., Lee S.K., Hong Y.K., Cho Y.C., Nam M.H., Kim S.C., Han S.S., Wang G.L., Hahn T.R., Ronald P.C., Jeon J.S.	Use of Pi5(t) markers in marker-assisted selection to screen for cultivars with resistance to Magnaporthe grisea.	Theor. Appl. Genet.	109(5)	978-85	2004	PI3,PI5,PII	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi i, Pii, Pi-i, Pii(t)
33793	15497407	Liu B., Zhang S., Zhu X., Yang Q., Wu S., Mei M., Mauleon R., Leach J., Mew T., Leung H.	Candidate defense genes as predictors of quantitative blast resistance in rice.	Mol. Plant Microbe Interact.	17(10)	1146-52	2004	PIGD2,PIGD3,PIGD1	Pi-GD-2(t), PiGD-2(t),Pi-GD-3(t), PiGD-3(t),Pi-GD-1(t), PiGD1, PiGD-1(t)
33794	18510771	Edwards J.D., Janda J., Sweeney M.T., Gaikwad A.B., Liu B., Leung H., Galbraith D.W.	Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice.	Plant Methods	4	13	2008		
33795	18943979	Campbell M.A., Chen D., Ronald P.C.	Development of Co-Dominant Amplified Polymorphic Sequence Markers in Rice that Flank the Magnaporthe grisea Resistance Gene Pi7(t) in Recombinant Inbred Line 29.	Phytopathology	94(3)	302-7	2004	PIK,PI1,PI7,PI44	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi7, Pi-7(t), Pi7(t),Pi44(t)*, Pi44(t), Pi44, Pi-44(t)
33796	16353550	Tosa Y., Osue J., Eto Y., Oh H.S., Nakayashiki H., Mayama S., Leong S.A.	Evolution of an avirulence gene, AVR1-CO39, concomitant with the evolution and differentiation of Magnaporthe oryzae.	Mol. Plant Microbe Interact.	18(11)	1148-60	2005	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
33798	23025618	Ai,B., Wang,Z.S. and Ge,S.	Genome size is not correlated with effective population size in the oryza species	Evolution	66(10)	3302-3310	2012	_,CPD1,_,LHS1,ADH1,WX1	NP70,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,Adh1, Adh1/2, adh1/adh2, OsADH1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
33799	22115274	Aliscioni,S., Bell,H.L., Besnard,G., Christin,P.A., Columbus,J.T., Duvall,M.R., Edwards,E.J., Giussani,L., Hasenstab-Lehman,K., Hilu,K.W., Hodkinson,T.R., Ingram,A.L., Kellog,E.A., Mashayekhi,S., Morrone,O., Osborne,C.P., Salamin,N., Schaefer,H., Spriggs,E., Smith,S.A. and Zuloaga,F.	New grass phylogeny resolves deep evolutionary relationships and discovers C4 origins	New Phytol.	193(2)	304-312	2012	_,RBCL,_,NDHF	matK, ORF542 ,rbcL, rbcA, OsrbcL,trnK(TTT), trnK,ndhF
33800	18973681	Argout,X., Fouet,O., Wincker,P., Gramacho,K., Legavre,T., Sabau,X., Risterucci,A.M., Da Silva,C., Cascardo,J., Allegre,M., Kuhn,D., Verica,J., Courtois,B., Loor,G., Babin,R., Sounigo,O., Ducamp,M., Guiltinan,M.J., Ruiz,M., Alemanno,L., Machado,R., Phillips,W., Schnell,R., Gilmour,M., Rosenquist,E., Butler,D., Maximova,S. and Lanaud,C.	Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions	BMC Genomics	9	512	2008	ALDH2B2,ALDH5F1	OsALDH2B2,OsALDH5F1, SSADH
33801	0	Bouchenak-Khelladi,Y., Verboom,G.A., Hodkinson,T.R., Salamin,N., Francois,O., van der Bank,M., Chonghaile,G.N. and Savolainen,V.	The origins and diversification of C4 grasses and savanna- adapted ungulates	Glob Chang Biol	15(10)	2397 2417	2009	_,_	trnL(UAA), trnL, trnL-UAA,trnF(GAA), trnF, trnF-GAA
33802	22943852	Chattopadhyay,T., Roy,S. and Maiti,M.K.	Spatio-temporal regulation of the OsHFP gene promoter establishes the involvement of this protein in rice anther development	Biochem. Biophys. Res. Commun.	426(2)	280-285	2012	_	OsHFP
33803	0	Cheng,Y.Y., Fang,S.A., Lin,Y.C. and Chung,M.C.	A repetitive sequence specific to Oryza species with BB genome and abundant in Oryza punctata Kotschy ex Steud	Bot Stud	48	263-271	2007		
33804	0	Cheng,Z., Tang,K., Yan,H., Fu,J., Ying,F. and Huang,X.	Analysis of differentially expressed genes in Oryza meyeriana in response to infection by Xanthomonas oryzae pv. oryzae	Plant Breed.	129(4)	393-399	2010		
33805	0	Chun,J.B., Ha,B.K., Jang,D.S., Song,M., Lee,K.J., Kim,J.B., Kim,S.H., Kang,S.Y., Lee,G.J., Seo,Y.W. and Kim,D.S.	Identification of mutations in OASA1 gene from gamma-irradiated rice mutant population	Plant Breed.	131	267-281	2012	ASA1	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
33806	22808069	Cotsaftis,O., Plett,D., Shirley,N., Tester,M. and Hrmova,M.	A Two-Staged Model of Na(+) Exclusion in Rice Explained by 3D Modeling of HKT Transporters and Alternative Splicing	PLoS ONE	7 (7)	E39865	2012	HKT8,HKT7	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT7, OsHKT1;4, HKT1;4
33807	22500940	Dong,H., Zhang,L., Zheng,K., Yao,H., Chen,J., Yu,F., Yu,X., Mao,B., Zhao,D., Yao,J. and Li,D.	A Gaijin-like miniature inverted repeat transposable element is mobilized in rice during cell differentiation	BMC Genomics	13(1)	135	2012	_,MGING,_,MPING,_,_,_,_,DITTO-OS1,DITTO-OS2,EXPLORER-OS1,EXPLORER-OS2,GAIJIN-OS1,GAIJIN-OS2,GAIJIN-OS3,GAIJIN-OS4,WANDERER-OS1,WANDERER-OS2,WANDERER-OS3,WANDERER-OS4,WANDERER-OS5,WANDERER-OL1,EXPLORER-OS3,CASTAWAY-OS1,CASTAWAY-OS2	PLRRP,mGing,Gaijin,mPing,Gaijin,Gaijin,Gaijin,Gaijin,Ditto-Os1,Ditto-Os2,Explorer-Os1,Explorer-Os2,Gaijin-Os1,Gaijin-Os2,Gaijin-Os3,Gaijin-Os4,Wanderer-Os1,Wanderer-Os2,Wanderer-Os3,Wanderer-Os4,Wanderer-Os5,Wanderer-Ol1,Explorer-Os3,Castaway-Os1,Castaway-Os2
33808	0	Dong,R., Wang,X., Yan,C. and Chen,J.	The function of rice OsBBR1 in resistance to rice bacterial blight disease	Zhejiang Nong Ye Xue Bao	23(6)	1140-1146	2011	_	OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33
33809	22228816	Dutt,M., Ananthakrishnan,G., Jaromin,M.K., Brlansky,R.H. and Grosser,J.W.	Evaluation of four phloem-specific promoters in vegetative tissues of transgenic citrus plants	Tree Physiol.	32(1)	83-93	2012	RSUS2	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1
33810	22359654	Gao,D., Chen,J., Chen,M., Meyers,B.C. and Jackson,S.	A Highly Conserved, Small LTR Retrotransposon that Preferentially Targets Genes in Grass Genomes	PLoS ONE	7 (2)	E32010	2012	FRETRO64,FRETRO129,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	FRetro64,FRetro129, SMART,osa-smRNA87,osa-smRNA1629,osa-smRNA11575,osa-smRNA15336,osa-smRNA26529,osa-smRNA27409,osa-smRNA28265,osa-smRNA41835,osa-smRNA55476,osa-smRNA60213,osa-smRNA73491,osa-smRNA83486 ,osa-smRNA95248 ,osac11smRNA288 ,osa-smRNA96292 ,osac1-smRNA38,osa-smRNA109754,osa-smRNA117590,osac1-smRNA25,osa-smRNA129401,osa-smRNA131555
33811	20457876	Garavito,A., Guyot,R., Lozano,J., Gavory,F., Samain,S., Panaud,O., Tohme,J., Ghesquiere,A. and Lorieux,M.	A genetic model for the female sterility barrier between Asian and African cultivated rice species	Genetics	185(4)	1425-1440	2010		
33812	22363621	Heang,D. and Sassa,H.	Antagonistic actions of HLH/bHLH proteins are involved in grain length and weight in rice	PLoS ONE	7 (2)	E31325	2012	PIL16,ILI6	APG, OsPIL16, OsbHLH106,ILI6, OsILI6, PGL1, OsPGL1
33813	21562713	Honma,Y., Yoshida,Y., Terachi,T., Toriyama,K., Mikami,T. and Kubo,T.	Polymorphic minisatellites in the mitochondrial DNAs of Oryza and Brassica	Curr. Genet.	57(4)	261-270	2011		
33814	22643901	Hua,L., Wu,J., Chen,C., Wu,W., He,X., Lin,F., Wang,L., Ashikawa,I., Matsumoto,T., Wang,L. and Pan,Q.	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	Theor. Appl. Genet.	125(5)	1047-55	2012	PI1,PIK	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33815	22268451	Huang,C.L., Hung,C.Y., Chiang,Y.C., Hwang,C.C., Hsu,T.W., Huang,C.C., Hung,K.H., Tsai,K.C., Wang,K.H., Osada,N., Schaal,B.A. and Chiang,T.Y.	Footprints of natural and artificial selection for photoperiod pathway genes in Oryza	Plant J.	70(5)	769-782	2012	PHYB,SE1,HD3A,EF1	phyB, PHYB1, OsPHYB, OsphyB,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
33816	18408163	Kalendar,R., Tanskanen,J., Chang,W., Antonius,K., Sela,H., Peleg,O. and Schulman,A.H.	Cassandra retrotransposons carry independently transcribed 5S RNA	Proc. Natl. Acad. Sci. U.S.A.	105(15)	5833-5838	2008	CASSANDRA,_	Cassandra,
33817	17546083	Kawakami,S., Ebana,K., Nishikawa,T., Sato,Y., Vaughan,D.A. and Kadowaki,K.	Genetic variation in the chloroplast genome suggests multiple domestication of cultivated Asian rice (Oryza sativa L.)	Genome	50(2)	180-187	2007	_	ORF100
33818	7672603	Kiefer-Meyer,M.C., Reddy,A.S. and Delseny,M.	Characterization of a dispersed repetitive DNA sequence associated with the CCDD genome of wild rice	Genome	38(4)	681-688	1995		
33819	8851805	Kiefer-Meyer,M.C., Reddy,A.S. and Delseny,M.	Complex arrangement of dispersed repeated DNA sequences in Oryza officinalis	Genome	39(1)	183-190	1996		
33820	22859673	Kou,Y., Chang,Y., Li,X., Xiao,J. and Wang,S.	The rice RAD51C gene is required for the meiosis of both female and male gametocytes and the DNA repair of somatic cells	J. Exp. Bot.	63(14)	5323-5335	2012	RAD51C	OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3
33821	22666315	Lu,L., Yan,W., Xue,W., Shao,D. and Xing,Y.	Evolution and association analysis of ghd7 in rice	PLoS ONE	7 (5)	E34021	2012	GHD7,EF1	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
33822	19672692	Luo,Y., Lv,G.L., Wu,W.T., Chen,S.N. and Cheng,Z.Q.	Analysis of genome expression in the response of Oryza granulata to Xanthomonas oryzae pv oryzae	Mol. Biol. Rep.	37(2)	875-892	2010		
33823	18687674	Lu,T., Yu,S., Fan,D., Mu,J., Shangguan,Y., Wang,Z., Minobe,Y., Lin,Z. and Han,B.	Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943	DNA Res.	15(5)	285-295	2008		
33824	8251186	Mochizuki,K., Ohtsubo,H., Hirano,H., Sano,Y. and Ohtsubo,E.	Classification and relationships of rice strains with AA genome by identification of transposable elements at nine loci	Jpn. J. Genet.	68(3)	205-217	1993	_,_,_,_,_,_,_,_,_	p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r2,p-SINE1-r3,p-SINE1-r4,p-SINE1-r5,p-SINE1-r6,p-SINE1-r7,Ret1,Tnr2
33825	3185503	Moon,E., Kao,T.H. and Wu,R.	Rice mitochondrial genome contains a rearranged chloroplast gene cluster	Mol. Gen. Genet.	213(2-3)	247-253	1988	_,_,_,RPL2,_,_,_,_,_,RBCL,_	trnM,atpE,trnM, trnM(CAU), trnM-CAU,rpl2,atpB,rbcL,trnV, trnV(UAC), trnV-UAC,atpE,atpB, AtpB, atpcf1, ATPbeta,rbcL, rbcA, OsrbcL,trnV.p, pseudo-trnV, trnV
33827	7916734	Reddy,A.S., Kiefer-Meyer,M.C. and Delseny,M.	Characterization of new variants of a satellite DNA from Oryza officinalis, specific for the CC genome of wild rice	Genome	36(4)	750-761	1993		
33828	0	Saha,P.S., Nandagopal,K., Ghosh,B. and Jha,S.	Molecular characterization of aromatic Oryza sativa L. cultivars from West Bengal, India	Nucleus (Calcutta)	55(2)	83-88	2012	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
33829	22891238	Sang,X., Li,Y., Luo,Z., Ren,D., Fang,L., Wang,N., Zhao,F., Ling,Y., Yang,Z., Liu,Y. and He,G.	CHIMERIC FLORAL ORGANS 1, Encoding a Monocot-specific MADS-box Protein, Regulates Floral Organ Identity in Rice	Plant Physiol.	160(2)	788-807	2012	DL,MADS32	DL, dl(lop), lop, dl, dl1,OsMADS32, CFO1, CFO1/OsMADS32, TRI1, OsMADS32/CFO, CFO
33830	22589467	Sasaki,A., Yamaji,N., Yokosho,K. and Ma,J.F.	Nramp5 is a major transporter responsible for manganese and cadmium uptake in rice	Plant Cell	24(5)	2155-2167	2012	IRT1,NRAMP5	OsIRT1,OsNRAMP5, OsNramp5
33831	0	Spalinskas,R., Van den Bulcke,M., Van den Eede,G. and Milcamps,A.	LT-RADE: an efficient user-friendly genome walking method applied to the molecular characterization of the insertion site of genetically modified maize MON810 and rice LLRICE62	Food Anal Methods	6	705-713	2012		
33832	22792078	Wang,K., Wang,M., Tang,D., Shen,Y., Miao,C., Hu,Q., Lu,T. and Cheng,Z.	The Role of Rice HEI10 in the Formation of Meiotic Crossovers	PLoS Genet.	8 (7)	E1002809	2012	PAIR3,_,ZEP1,RMC1,RAD21-4	,HEI10, HEI10A, HEI10B, OsHEI10,OsZEP1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsRad21-4, REC8, OsREC8, OsRAD21-4
33833	0	Waters,D.L.E., Nock,C.J., Rice,N., Ishikawa,R. and Henry,R.J.	Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice	Ecol Evol	2(1)	211-217	2012		
33834	22900499	Wu,K., Xu,T., Guo,C., Zhang,X. and Yang,S.	Heterogeneous evolutionary rates of Pi2/9 homologs in rice	BMC Genet.	13(1)	73	2012	_,_,_,_,_,PIZT	,,,,Nbs1-Pi9, Nbs1-Pi2, Nbs1-NPB,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
33835	17660692	Xu,J.H., Cheng,C., Tsuchimoto,S., Ohtsubo,H. and Ohtsubo,E.	Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs	Genes Genet. Syst.	82(3)	217-229	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	p-SINE1-r1, p-SINE1-r1* ,p-SINE1-r2,p-SINE1-r401,p-SINE1-r402,p-SINE1-r403,p-SINE1-r404,p-SINE1-r405,p-SINE1-r406,p-SINE1-r411,p-SINE1-r412,p-SINE1-r413,p-SINE1-r414,p-SINE1-r421,p-SINE1-r422,p-SINE1-r423,p-SINE1-r431,p-SINE1-r432,p-SINE1-r433,p-SINE1-r441,p-SINE1-r442,p-SINE1-r443,p-SINE1-r444,p-SINE1-r445,p-SINE1-r446,p-SINE1-r447,p-SINE1-r448,p-SINE1-r449,p-SINE1-r450,p-SINE1-r451,p-SINE1-r452,p-SINE1-r69,p-SINE1-r34,p-SINE1-r58,p-SINE1-r210,p-SINE1-r30,p-SINE1-r51,p-SINE1-r53,p-SINE1-r54,p-SINE1-r56,p-SINE1-r57,p-SINE1-r62,p-SINE1-r215,p-SINE1-r502,p-SINE1-r505,p-SINE1-r506,p-SINE1-r507,p-SINE1-r510,p-SINE1-r55,p-SINE1-r59,p-SINE1-r60,p-SINE1-r61,p-SINE1-r501,p-SINE1-r503
33836	12561229	Yang,J.B., Wang,X.F., Zhao,C.S., Xiang,T.H. and Li,L.	[Cloning and sequencing of fragments associated with cytoplasm male sterility of rice]	Yi Chuan Xue Bao	29(9)	808-813	2002		
33837	22937009	Yang,R., Sun,C., Bai,J., Luo,Z., Shi,B., Zhang,J., Yan,W. and Piao,Z.	A Putative Gene sbe3-rs for Resistant Starch Mutated from SBE3 for Starch Branching Enzyme in Rice (Oryza sativa L.)	PLoS ONE	7 (8)	E43026	2012	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
33838	22136599	Yoshida,A., Ohmori,Y., Kitano,H., Taguchi-Shiobara,F. and Hirano,H.Y.	Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice	Plant J.	70(2)	327-339	2012	ASP1	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3
33840	22870184	Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.	The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins	PLoS ONE	7 (7)	E42041	2012	_,_,NDHF,RPS7,_,NDHB,_,_,_,_,16S  rRNA,_,_,_,_,PSBI,_,RPS3,_,_,PSBH,_,_,_,_,NDHJ,_,_,_,PSBD,_,PETA,_,CLPP,_,PSBN,INFA,RPL36,_,_,_,_,_,NDHC,_,_,_,_,_,23S  rRNA,_,RPS4,_,_,_,_,NDHE,RPS12,_,_,23S  rRNA,_,_,16S  rRNA,_,_,_,RPL23,4.5S  rRNA,RPS16,PSBZ,PSBK,RPS2,_,_,RPS7,PSAC,RPL14,YCF4,RPL22,PSBL,PSBF,PSBE,_,_,_,RPS11,RPL16,RPL33,RPS8,RPS19,RPL32,NDHG,RPS14,NDHK,PSBM,NDHI,NDHH,5S  rRNA,5S  rRNA,4.5S  rRNA,_,_,RPL23,RPS19,_,_,RPS12,PETE,RPOC2,RPS18,PSAB,RPOC1,PETD,RPL2,PSBA,_,NDHD,_,RPOB,NDHB,RPL2,PSAA,NDHA,_,RPS15,RPS15,_,_,_,_,_,5S  rRNA,_,NAD2,_,_,_,_,_,_,RPS7,_,_,_,_,_,RPS13,PSBC,RPOA,RBCL,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,26S  rRNA,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,26S  rRNA,_,_,_,_,_,NAD5,_,NAD6,_,_,_,_,RPS1,_,_,NAD9,_,RPS4,_,_,_,_,_,_,_,RPL16,NAD3,RPS12,_,RPS2,_,RPS19,NAD4L,_,_,_,3'RPS12,GSLm,_,RPL2,NAD7,_,RPS3,NAD4,NAD1,_	atpH,ORF133, ycf68,ndhF,rps7,ORF40, psbJ,ndhB,trnS(GCU), trnS, trnS-GCU,trnQ(UUG), trnQ, trnQ-UUG,trnK(UUU), trnK, trnK-UUU,trnS(UGA), trnS, trnS-UGA,rrn16,trnfM(CAU), trnfM, trnfM-CAU,trnT(GGU), trnT, trnT-GGU,trnY(GUA), trnY, tmY-GUA,trnD(GUC), trnD, trnD-GUC,psbI,trnI(CAU), trnI, trnI-CAU,rps3,ORF170, ycf3, IRF170,ORF29, petN,psbH, psbF ,trnC, trnC(GCA), trnC-GCA,ORF106, accD,trnR(UCU), trnR, trnR-UCU,trnS(GGA), trnS, trnS-GGA,ORF159, ndhJ,trnT(UGU), trnT, trnT-UGU,trnV, trnV(UAC), trnV-UAC,trnM, trnM(CAU), trnM-CAU,psbD, D2, OsPsbD1, OsPsbD2,psaI, ORF36,petA, Cytf, cytF, Cyt f,trnW(CCA), trnW, trnW-CCA,ORF216, ClpP, clpP,trnP(UGG), trnP, trnP-UGG,psbN, PsbN,infA,rpl36,trnH(GUG), trnH, trnH-GUG,matK, ORF542 ,trnL(UAA), trnL, trnL-UAA,trnF(GAA), trnF, trnF-GAA,ORF133, ycf68,ndhC,trnV, trnV(GAC), trnV-GAC,trnI(GAU), trnI, trnI-GAU,trnA(UGC), trnA, trnA-UGC,orf42,ORF230, cemA,rrn23,trnR(ACG), trnR, trnR-ACG,rps4 ,trnN(GUU), trnN, trnN-GUU,ORF56, ndhH,ORF321, ccsA,trnL(UAG), trnL, trnL-UAG,ndhE,rps12,trnN(GUU), trnN, trnN-GUU,trnR(ACG), trnR, trnR-ACG,rrn23,orf42,trnI(GAU), trnI, trnI-GAU,rrn16,trnV, trnV(GAC), trnV-GAC,trnL(CAA), trnL, trnL-CAA,trnL(CAA), trnL, trnL-CAA, L-CAA,rpl23,rrn4.5,rps16,psbZ, lhbA, ORF62,psbK,rps2,atpI,atpE,rps7,psaC,rpl14,Ycf4, ORF185,rpl22,psbL,psbF,psbE,ORF31, petL,ORF44, psaJ,rpl20,rps11,rpl16,rpl33,rps8,rps19,rpl32, ORF63,ndhG,rps14 ,psbG, ndhK,psbM,ORF178, ndhI,ORF393, ndhH,rrn5,rrn5,rrn4.5,trnH(GUG), trnH, trnH-GUG,trnI(CAU), trnI, trnI-CAU,rpl23,rps19,trnA(UGC), trnA, trnA-UGC,atpF,rps12,petE, petG,rpoC2, RPO beta", RPObeta",rps18,PsaB, psaB, PsAA2,rpoC1, RPO beta', RPObeta',petD,rpl2,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,petB,ndhD, NdhD, NDH4, NADH4,atpA,rpoB, RpoB, Rpobeta,ndhB, NDH2, NADH2,rpl2,PsaA, psaA, PsAA1,ndhA,psbB,rps15,rps15,trnG(GCC), trnG, trnG-GCC, trnG-UCC,trnS(GCT), trnS,trnC(GCA), trnC,trnM(CAT), trnM,orf187, orf187-2,rrn5,rrn18,nad2,trnQ(TTG), trnQ,trnI(CAT), trnI,trnD(GTC), trnD,trnN(GTT), trnN,trnK(TTT), trnK,trnP(TGG), trnP,rps7,trnM(CAT), trnM,trnH(GTG), trnH,trnP(TGG), trnP,trnW(CCA), trnW,orf153,rps13,psbC, cp43 ,rope, rpoalpha, Rpoalpha, rope, RpoA ,rbcL, rbcA, OsrbcL,coxI, COX1, cox1-1, cox1,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,atp1, atp1-1, ATP1,mat-r, mat-r-1,ccmFn, ccmFn-1,orf165, orf165-1,cob,mat-r-2,ccmFn-2,rps1-2,ccmFc-2,trnS(GCT), trnS,trnC(GCA), trnC,orf165-2,orf284-2,cox1-2,rpl5-2,trnY(GTA), trnY,trnF(GAA), trnF,rrn26,trnE(TTC), trnE,nad9, nad9-2,orf490,orf187-3,atp6-2,trnfM(CAT), trnfM,orf173, orf173-2,orf152b-2,orf187-4,rrn5,rrn18,ccmC, orf240,nad3,orfB, atp8 ,orfX,rpl5, rpl5-1,trnS(GGA), trnS,atp1, atp1-2,trnE(TTC), trnE,trnY(GTA), trnY,orf25, atp4,rrn26,orf162, orf162-2,orf162, orf162-1,trnS(GGA), trnS,trnF(GAA), trnF,orf152a, orf152b,nad5,orf181,nad6,orf183,cox2, coxII,orf152b, orf152b-1, orf152,orf187, orf187-1,rps1, rps1a, rps1b, rps1-1,orf284, orf284-1,orf173, orf173-1, orf173b,nad9, nad9-1, CI-27kD, CI-27KD,orf161,rps4,trnS(TGA), trnS,trnC(GCA), trnC,trnR(TCT), trnR,ORF35, psbT,trnE(UUC), trnE, trnE-UUC,ycf15.p,ycf15.p,rpl16, pseudo-rpl16,nad3,rps12,orf224, orf224a, orf224b,rps2, orf483 ,orf176, orf173 ,rps19,nad4L,ccmB,atpB, AtpB, atpcf1, ATPbeta,ccmFc, ccmFc-1,3'rps12, 3'-rps12, rps12,orf241, OsGSLm, OsGSLmt, GSLmt,orf160, orf160b ,rpl2,nad7,cob, cob-1, cob-like,rps3,nad4, nadIV,nad1, nadI, nadIB,atp9, RMtATP9, aatp9
33841	0	Zhang,W.H., Deng,H.F., Chen,L.B., He,Q., Shu,F., Chen,J.L. and Yuan,L.P.	Study of indica-japonica character of non-AA wild rice chloroplast DNA	J. Agric. Sci. Technol.	9	93-97	2007	_	ORF100
33842	22408071	Zhou,Y., Lu,D.F., Li,C.Y., Luo,J.H., Zhu,B., Zhu,J.J., Shangguan,Y.Y., Wang,Z.X., Sang,T., Zhou,B. and Han,B.	Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1	Plant Cell	24(3)	1034-1048	2012	SHAT1,qSH1,SH4	SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5,qSH1, qsh1, qSH-1,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
33843	8651913	R Rakwal, M Hasegawa, O Kodama	A methyltransferase for synthesis of the flavanone phytoalexin sakuranetin in rice leaves.	Biochem. Biophys. Res. Commun.	222(3)	732-5	1996	NOMT	OsNOMT, COMTL3, OsCOMTL3
33844	10814825	Rakwal R., Agrawal G.K., Yonekura M., Kodama O.	naringenin 7-O-methyltransferase involved in the biosynthesis of the flavanone phytoalexin sakuranetin from rice (Oryza sativa L.).	Plant Sci.	155(2)	213-221	2000	NOMT	OsNOMT, COMTL3, OsCOMTL3
33845	19811687	Xu Z., Zhang D., Hu J., Zhou X., Ye X., Kristen L Reichel, Nathan R Stewart, Ryan D Syrenne, Yang X., Gao P., Shi W., Doeppke C., Robert W Sykes, Jason N Burris, Joseph J Bozell, Max Zong-Ming Cheng, Douglas G Hayes, Labbe N., Davis M., C Neal Stewart, Joshua S Yuan	Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom.	BMC Bioinformatics	10 Suppl 11	S3	2009	NOMT,COMTL4,COMTL1,COMTL6,COMTL5,COMTL2	OsNOMT, COMTL3, OsCOMTL3,OsCOMTL4, COMT2 ,OsCOMTL1,OsCOMTL6,OsCOMTL5,OsCOMTL2
33846	0	Lopez-Gerena J.	Mapping QTL controlling durable resistance to rice blast in the cultivar Oryzica Llanos 5	Ph.D. Thesis. Kansas State Univ.		-	2006		
33847	0	Yanagihara S., Fukuta, Noda T., Wissuwa M., Kumashiro T.	Genetic improvement of rice varieties for Africa under new research collaboration between JIRCAS and Africa Rice Center	Second Africa Rice Congress proceedings		651-656	2010		
33848	0	Zhuang J.Y., Ma W.B., Wu J.L., Chai R.Y., Lu J., Fan Y.Y., Jin M.Z., Leung H., Zheng K.L.	Mapping of leaf and neck blast resistance genes with resistance gene analog, RAPD and RFLP in rice	Euphytica	128	363-370	2002	PI24,PI25	Pi24, Pi24(t),Pi25, Pi25(t)
33849	0	Fujii, Hayano-Saito Y., Sugiura N., Hayashi N., Izawa T., Iwasaki M.	Quantitative evaluation of protective effect of Pb1 gene, conferring field resistance to rice panicle blast, using near-isogenic lines	Breeding Research	7	75-85	2005		
33850	0	Telebanco-Yanoria M.J., Koide Y., Fukuta Y., Imbe T., Kato H., Tsunematsu H., Kobayashi N.	Development of near-isogenic lines of Japonica-type rice variety Lijiangxintuanheigu as differentials for blast resistance	Breed. Sci.	60	629-638	2010	PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
33851	0	Ebitani T., Hayashi N., Omoteno M., Ozaki H., Yano M., Morikawa M., Fukuta Y.	Characterization of Pi13, a blast resistance gene that maps to chromosome 6 in indica rice (Oryza sativa L. variety, Kasalath)	Breed. Sci.	61	251-259	2011	PI13	Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*
33852	0	Correa-Victoria F.J., Tharreau D., Martinez C., Vales M., Escobar F., Prado G., Aricapa G.	Gene Combinations for Durable Rice Blast. Resistance in Colombia	CIAT poster		-	2007	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33853	0	Koide Y., Kobayashi N., Xu D., Fukuta Y.	Resistance Genes and Selection DNA Markers for Blast Disease in Rice (Oryza sativa L.)	JARQ	43	255-280	2009	PITQ5,PIT,PI3,PI67,PIIS1,PIIS2,PI11,PI7,PI8,PI20,PI21,PI10,PI23,PI15,PITP,PI24,PI12,PIQ1,PIZ5,PILM2,PISE1,PISE2,PISE3,PI22,PI13,PI12,PI13,PI14,PI14,PI16,PI17,PI18,PI19,PI24,PI25,PI25,PI26,PI28,PI29,PI30,PI31,PI32,PI38,PI40,PIF,PIG,PIGD1,PIGD3,PI27,PI27,PI34,PI35,PI39,PI39,PI44,PI62,PI157,PIGD2,PI21,PII2,PIKS,PIKUR1,PIKUR2,PIY1,PIY2,PI26,PID1,PII,PI9,PI5,PIGM,PID2,PICO39,PI36,PIA,PI37,PI33,PIB,PIKP,PIKM,PI1,PISH,PITQ6,PIK,PIZT,PIKH,PITA,PI6,PIZ	Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi67(t)*, Pi67, Pi67(t),Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11,Pi7, Pi-7(t), Pi7(t),Pi8, Pi-8,Pi20, Pi20(t),Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi15(t), Pi15, RMg34.,Pi-tp(t), Pitp(t), Pi-tp,Pi24(t), Pi-24(t), Pi-24, Pi24,Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi-lm2, Pilm2, Pi lm2, Pib2,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi se2(Rb2), Rb2, Pise2, Pi-se-2, Rb-2,Pi se3(Rb3), Rb3, Pise3, Pi-se-3, Rb-3,Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi13(t), Pi13(t)*, Pi13,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pi14(t), Pi14(t)*, Pi14,Pi16(t), Pi16, Pi-16(t),Pi17(t), Pi17, Pi-17(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi19(t), Pi14, Pi19,Pi24, Pi24(t),Pi25(t), Pi-25(t),Pi25, Pi25(t),Pi26(t), Pi-26(t),Pi28(t), Pi-28(t),Pi-29(t), Pi29(t),Pi-30(t), Pi30(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi-32(t), Pi32(t)*, Pi32(t),Pi38, Pi-38,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi f, PIF, Pif, RMg3, Pi-f,Pi-g(t),Pi-GD-1(t), PiGD1, PiGD-1(t),Pi-GD-3(t), PiGD-3(t),Pi27, Pi27(t), Pi-27(t),Pi27(t), Pi-27(t),Pi34, RMg71, Pi24(t),Pi35(t),Pi39(t), Pi39,Pi39(t), Pi39,Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi157*, Pi157(t)*, Pi-157, Pi157,Pi-GD-2(t), PiGD-2(t),pi21, rMg40,Pi i2, Pii2, Pii2(t),Pi-ks, Pi-s, Pik-s, Piks,Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Pi-y1(t), Pi-y(t), Piy1(t),Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi26(t), Pi26,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pi i, Pii, Pi-i, Pii(t),Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pigm(t), Pi-gm(t), Pigm,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t),PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pi36(t), Pi36,Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi37(t), Pi37,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi sh, Pish, Pi-sh, Pish(t),Pi-tq6, Pitq6,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33854	0	Kiyosawa S.	Inheritance of resistance of rice varieties to a Philippine fungus strain of Pyricularia oryzae	Japan. J. Breeding	19	61-73	1969	PIKS,PIM,PIKM,PIK	Pi-ks, Pi-s, Pik-s, Piks,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33855	0	Utami D.W., Ambarwati A.D., Apriana A., Sisharmini A., Hanarida I., Tharreau D., Santosa D.	Resistance Spectrum of Double Haploid Lines Derived from IR64 and Wild Rice Species, Oryza rufipogon Contained the Blast Resistance QTL (Pir)	Jurnal AgroBiogen	3	1-8	2007	PIR7,PIR4	Pir7,Pir4
33856	0	Jena K.K., Suh J.P., Jeung J.U., Cho Y.C., Roh J.H., Han S.S., Kim Y.G., Brar D.S.	Molecular Breeding for Durable Blast Disease Resistance in Rice	5th International Crop Science Congress proceedings		1-4	2008	PI40	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40
33857	0	Li L.Y., Wang L., Jing J.X., Li Z.Q., Lin F., Huang L.F., Pan Q.H.	The Pikm gene, conferring stable resistance to isolates of Magnaporthe oryzae, was finely mapped in a crossover-cold region on rice chromosome 11	Mol Breeding	20	179-188	2007	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33859	0	Cho Y.C., Kwon S.W., Suh J.P., Kim J.J., Lee J.H., Roh J.H., Oh M.K., Kim M.K., Ahn S.N., Koh H.J., Yang S.J., Kim Y.G.	QTLs Identification and Confirmation of Field Resistance to Leaf Blast in Temperate japonica Rice (Oryza sativa L.)	J. Crop Sci. Biotech.	11	269-276	2008	PIZT,PIQ1,PI44	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi44(t)*, Pi44(t), Pi44, Pi-44(t)
33860	0	Jia Y., Moldenhauer K.	Development of Monogenic and Digenic Rice Lines for Blast Resistance Genes Pi-ta, Pi-kh/Pi-ks	Journal of Plant Registrations,	4	163-166	2010	PIK,PIKS,PIKH	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi-ks, Pi-s, Pik-s, Piks,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33861	0	Babujee L., Gnanamanickam S.S.	Molecular tools for characterization of rice blast pathogen (Magnaporthe grisea) population and molecular marker-assisted breeding for disease resistance	Curr. Sci.	78	248-257	2000	PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
33862	0	Koide Y., Telebanco-Yanoria M.J., Pena F.D., Fukuta Y., Kobayashi N.	Characterization of Rice Blast Isolates by the Differential System and their Application for Mapping a Resistance Gene, Pi19(t)	J Phytopathol	159	85-93	2011	PI1,PI19	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi19(t), Pi14, Pi19
33863	0	Luo C.X., Hanamura H., Sezaki H., Kusaba M., Yaegashi H.	Relationship between avirulence genes of the same family in rice blast fungus Magnaporthe grisea	J. Gen. Plant Pathol.	68	300-306	2002	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33864	0	Mahender A., Swain D.M., Gitishree D., Subudhi H.N., Rao G.J.N.	Molecular analysis of native Manipur rice accessions for resistance against blast	Afr. J. Biotechnol.	11	1321-1329	2012	PI40,PIZT,PIZ	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33865	0	Zhou J.H., Wang J.L., Xu J.C., Klei C.L., Ling Z.Z.	Identification and mapping of a rice blast resistance gene Pi-g(t) in the cultivar Guangchangzhan	Plant Pathol.	53	191-196	2004	PIG,PIB,PI25,PITQ5,PI16	Pi-g(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi25(t), Pi-25(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi16(t), Pi16, Pi-16(t)
33866	0	Yokoo M., Kiyosawa S.	Inheritance of blast resistance of the rice variety, Toride 1, selected from the cross Norin 8 x TKM.1	Japan. J. Breed.	20	129-132	1970	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33867	0	Jia Y., Lee F.N., McClung A.	Determination of Resistance Spectra of the Pi-ta and Pi-k Genes to U.S. Races of Magnaporthe oryzae Causing Rice Blast in a Recombinant Inbred Line Population	Plant Dis.	93	639-644	2009	PI39,PIKH,PIK,PITA	Pi39(t), Pi39,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33868	0	Narayanan N.N., Baisakh N., Oliva N.P., Vera Cruz C.M., Gnanamanickam S.S., Datta K., Datta S.K.	Molecular breeding: marker-assisted selection combined with biolistic transformation for blast and bacterial blight resistance in Indica rice (cv. CO39)	Molecular Breeding	14	61-71	2004	PIZ5	Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
33869	0	Berruyer R., Adreit H., Milazzo J., Tharreau D., Dioh W., B?hnert H.U., Zhu L., Price A., Notteghem J.L.	Characterization of Pi33, a resistance gene in rice interacting with Magnaporthe grisea avirulence gene ACE1	IRRN	27	11-12	2002	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33870	0	Utami D.W., Moeljopawiro S., Aswidinnoor H., Setiawan A., Hanarida D.I.	Gen Pengendali Sifat Ketahanan Penyakit Blas (Pyricularia grisea Sacc.) pada Spesies Padi Liar Oryza rufipogon Griff. dan Padi Budi Daya IR64	Jurnal AgroBiogen	1	1-6	2005	PIR9-2,PIR2-3,PIR12-2,PIRF2-1	Pir9-2, Pir9-2(t),Pir2-3, Pir2-3(t),Pir12-2, Pir12-2(t),Pirf2-1, Pirf2-1(t)
33871	0	Namai T., Ohba A., Sugahara S., Togashi J.	True resistance genes harbored by rice cultivars on pathogenic variation of rice blast fungus re-isolated from panicles of resistance rice cultivars	Ann. Phytopathol. Soc. Jpn.	65	67-75	1999	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33872	0	Xiao W., Yang Q., Wang H., Duan J., Guo T., Liu Y., Zhu X., Chen Z.	Identification and fine mapping of a major R gene to Magnaporthe oryzae in a broad-spectrum resistant germplasm in rice	Mol Breeding (Published online)	28	303-312	2011	PI51,PIZ,PI40,PI9	Pi51(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
33873	0	Ahn S.N., Kim Y.K., Hong H.C., Han S.S., Kwon S.J., Choi H.C., Moon H.P., McCouch S.R.	Molecular mapping of a new gene for resistance to rice blast (Pyricularia grisea Sacc.)	Euphytica	116	17-22	2000	PI21,PI22,PI18	Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
33874	0	Kiyosawa S.	Inheritance of blast-resistance in some Chinese rice varieties and their derivatives	Japan. J. Breeding	18	193-205	1968	PIA,PIM,PIKM,PIK	Pi a, Pia, Pi-a, Pia-1, Pia-2,Pi-m, Pik-m(Pi m), Pik-m, Pi m, Pi-km,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33875	0	Wen S., Gao B.	Introgressing Blast Resistant Gene Pi-9(t) into Elite Rice Restorer Luhui17 by Marker-Assisted Selection	Rice Genomics and Genetics	2	31-36	2011	PI9	Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
33877	0	Rathour R., Chopra M., Sharma T.R.	Development and validation of microsatellite markers linked to the rice blast resistance gene Pi-z of Fukunishiki and Zenith	Euphytica	163	275-282	2008	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33878	0	Lee S., Wamishe Y., Jia Y., Liu G., Jia M.H.	Identification of two major resistance genes against race IE-1k of Magnaporthe oryzae in the indica rice cultivar Zhe733	Mol Breeding	24	127-134	2009	PI43,PI42,PI1	Pi43, Pi43(t), Pi-43(t),Pi42(t), Pi-42(t), Pi42,Pi1, Pi-1, Pi1-5C, Pi1-6C
33879	0	Zenbayashi-Sawata K., Ashizawa T.	Mapping of the Pi34 conferring partial resistance to rice blast on the physical map	The phytopathological Society of Japan	70	193-194	2004	PI34	Pi34, RMg71, Pi24(t)
33880	20879839	Zheng Y., Zheng W., Lin F., Zhang Y., Yi Y., Wang B., Lu G., Wang Z., Wu W.	AVR1-CO39 Is a Predominant Locus Governing the Broad Avirulence of Magnaporthe oryzae 2539 on Cultivated Rice (Oryza sativa L.)	MPMI	24	13-17	2011	PICO39	PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
33881	0	Ysuda N., Zenbayashi K., Fujita K.	Identification of an avirulence gene in Magnaporthe oryzae which controls avirulence to the resistance rice cultivar 'Hokkai188'	The phytopathological Society of Japan	74	191-191	2008	PI35	Pi35(t)
33882	18943271	Chen H., Wang S., Zhang Q.	New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line	Phytopathology	92(7)	750-754	2002	SWEET13	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25
33883	0	Sabouri H., Sabouri A., Jafarzadeh M.R., Mollashahi M.	Detection of QTLs controlling field blast resistance in rice (Oryza sative L.)	Plant Omics Journal	4	1-5	2011		
33884	0	Jia Y., Wang Z., Singh P.	Development of Dominant Rice Blast Pi-ta Resistance Gene Markers	Crop Sci.	42	2145-2149	2002	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33885	0	Kim D.M., Ju H.G., Ahn S.N.	Fine mapping of quantitative trait loci conferring blast field resistance in an advanced backcross population between Japonica cultivars in rice	3rd International Rice Congress proceedings		57-57	2010		
33886	0	Zhou B., Wang G.L.	Functional and Evolutionary Analysis of the Pi2/9 Locus in Rice	Advances in Genetics, Genomics and Control of Rice Blast		127-135	2009	PI40,PI9,PIGM,PIZ	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pigm(t), Pi-gm(t), Pigm,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33887	0	Loan L.C., Du P.V., Li Z.	Identification of genes conffering resistance to some Philippine and Vietnamese races of blast	Omonrice	11	49-62	2003		
33889	0	Koga H., Kobayashi T.	Early infection process of Pyricularia oryzae Cav. in rice leaves of compatible and incompatible combinations	Ann. Phytopath. Soc. Japan	48	506-513	1982	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33890	0	Yokoo M., Kikuchi F., Fujimaki H., Nagai K.	Breeding of blast resistance lines (BL1 to 7) from Indica-Japonica crosses of rice	Japan. J. Breed.	28	359-385	1978	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33891	0	Kiyosawa S., Orimoto Y., Iida S.	Relationship between frequencies of resistance gene in the host and corresponding virulence gene in the pathogen in rice blast disease	Japan. J. Breeding	34	322-334	1984	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33892	0	Kiyosawa S., Murty V.V.S.	The inheritance of blast-resistance in indian rice variety, HR-22	Japan. J. Breeding	19	269-276	1969	PIKH,PIK,PIKS	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi-ks, Pi-s, Pik-s, Piks
33893	0	Kiyosawa S.	Gene Analysis of Blast Resistance in Exotic Varieties of Rice	JARQ	6	8-15	1971	PIKS,PIKH,PIK	Pi-ks, Pi-s, Pik-s, Piks,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33894	0	Zhao K., Wright M., Kimball J., Eizenga G., McClung A., Kovach M., Tyagi W., Ali M.L., Tung C.W., Reynolds A., Bustamante C.D., McCouch S.R.	Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome	PLoS ONE	5	e10780-e10780	2010		
33895	0	Utami D.W., Moeljopawiro S., Hanarida I., Tharreau D.	Fine mapping of rice blast QTL from Oryza rufipogon and IR64 by SNP markers	Sabrao Journal of Breeding and Genetics	40	105-115	2008	PIR4,PIR7	Pir4,Pir7
33896	0	Narayanan N.N., Baisakh N., Vera Cruz C.M., Gnanamanickam S.S., Datta K., Datta S.K.	Molecular Breeding for the Development of Blast and Bacterial Blight Resistance in Rice cv. IR50	Crop Sci.	42	2072-2079	2002	PIZ5	Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
33897	0	Akhtar S., Bhat M.A., Wani S.A., Bhat K.A., Chalkoo, Mir M.R., Wani S.A.	Marker assisted selection in rice	Journal of Phytology	2	66-81	2010	PI42	Pi42(t), Pi-42(t)
33899	0	Jiang H., Feng Y., Bao L., Li X., Gao G., Zhang Q., Xiao J., Xu C., He Y.	Improving blast resistance of Jin 23B and its hybrid rice by marker-assisted gene pyramiding	Mol Breeding (Published online)	30	1679-1688	2012	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
33900	0	Jichen X., Jiulin W., Zhongzhuan L., Lihuang Z.	Analysis of rice blast resistance genes by QTL mapping	Chinese Science Bulletin	49	337-342	2004		
33902	0	Yasuda N., Noguchi M.T., Fujita Y.	Induced Rice Resistance to Blast Varies as a Function of Magnaporthe grisea Avirulence Genes	Plant Dis.	92	1144-1149	2008		
33903	0	Kiyosawa S.	Inheritance of blast-resistance in West Pakistani rice variety, Pusur	Japan. J. Breeding	19	121-128	1969	PIKP,PIK	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33904	0	Zenbayashi-Sawata K., Ashizawa T., Koizumi S.	Identification of the avirulence gene AVR-Pi34 in Magnaporthe grisea associated with the partial resistance gene Pi34 to rice blast	The phytopathological Society of Japan	71	196-196	2004	PI34	Pi34, RMg71, Pi24(t)
33906	0	Telebanco-Yanoria M.J., Imbe T., Kato H., Tsunematsu H., Ebron L.A., Vera Cruz C.M., Kobayashi N., Fukuta Y.	A Set of Standard Differential Blast Isolates (Magnaporthe grisea (Hebert) Barr.) from the Philippines for Rice (Oryza sativa L.) Resistance	JARQ	42	23-34	2008		
33907	0	Marchetti M.A., Lai X., Bollich C.N.	Inheritance of resistance to Pyricularia oryzae in rice cultivars grown in the United States	Phytopathology	77	799-804	1987	PIKH,PIKS	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi-ks, Pi-s, Pik-s, Piks
33908	0	Kiyosawa S., Yasuda H., Shintani I., Koide H., Morimoto T.	Blast nursery tests for field resistance of rice varieties with different genotypes for true resistance to blast	Ann. Phytopath. Soc. Japan	43	517-523	1977	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33909	0	RoyChowdhury M., Jia Y., Jackson A., Jia M.H., Fjellstrom R., Cartwright R.D.	Analysis of rice blast resistance gene Pi-z in rice germplasm using pathogenicity assays and DNA markers	Euphytica	184	35-46	2012	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33910	0	Hanamura H., Sezaki H., Yasuda N., Fujita Y., Kusaba M., Yaegashi H.	Genetic analysis of avirulence genes in blast fungus to rice blast resistance genes Piz and Piz-t	Jpn. J. Phytopathol.	67	181-181	2001	PIZT,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33911	0	Liu Y., Zhu X.Y., Zhang S., Leach J., Liu B., Leung H.	NBS-LRR gene clusters contributing to durable resistance to Magnaporthe oryzae in rice variety SHZ-2	6th International Rice Genetics Symposium		110-110	2009	PI56	Pi56, qBR9.1, Pi56(t)
33912	0	Saka N., Terashima T., Kudo S., Kato T., Sugiura K., Endo I., Shirota M., Inoue M., Otake T.	A New High Field Resistant Variety Mine-haruka for Rice Blast	Res.Bull.Aichi Agric.Res.Ctr.	39	95-109	2007	PI39	Pi39(t), Pi39
33913	0	Pan Q., Wang L., Tanisaka T., Ikehashi H.	Allelism of rice blast resistance genes in two chinese rice cultivars, and identification of two new resistance genes	Plant Pathol.	47	165-170	1998	PI15,PII,PIK	Pi15(t), Pi15, RMg34.,Pi i, Pii, Pi-i, Pii(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33914	0	Saka N., Fukuoka S., Terashima T., Kudo S., Shirota M., Ando I., Sugiura K., Sato H., Maeda H., Endo I., Kato H., Inoue M.	Breeding of A New Rice Variety Chubu 125 with High Field Resistance for Blast and Excellent Eating Quality	Res.Bull.Aichi Agric.Res.Ctr.	42	171-183	2010		
33915	0	Mithrasena Y.J.P.K., Wijesundera W.S.S., Wijesundera R.L.C., Wimalasiri D.C., Priyanthi R.P.N.	Pathogenic and Genetic Diversity of Magneporthe oryzae Populations from Sri Lanka	Rice Science	19	241-246	2012	PITA,PI9,PISH,PIT,PIKH,PIZ5	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi sh, Pish, Pi-sh, Pish(t),Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2
33916	0	Yokoo M.	Introduction of Piz-t and Pib Genes for Blast Disease Resistance from Indica Varieties and their Utilization for Genetic Researches in Rice	JARQ	39	239-245	2005	PIZT,PIZ,PIB	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33917	0	Yokoo M., Fujimaki H.	Tight linkage of blast-resistance with maturity observed in different Indica varieties of rice	Japan. J. Breed.	21	35-39	1971	PIZT	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
33918	0	Zenbayashi-Sawata K., Katagiri K., Fujisawa M., Matsumoto T., Fukuoka S.	Physical mapping of the partial resistance gene Pi34 to rice blast and annotation analysis of the candidate genes	The phytopathological Society of Japan	72	223-223	2006	PI34	Pi34, RMg71, Pi24(t)
33919	0	Normile D.	New Strategy Promises Lasting Resistance to a Rice Plague	Science	325	925-925	2009		
33920	0	Cho Y.C., Jeung J.U., Park H.J., Yang C.I., Choi Y.H., Choi I.B., Won Y.J., Yang S.J., Kim Y.G.	Haplotype Diversity and Durability of Resistance Genes to Blast in Korean Japonica Rice Varieties	J. Crop Sci. Biotech.	11	205-214	2008		
33921	0	Hashimoto N., Daigen M., Hayashi K., Ashikawa I., Takahara Y., Yamamoto K.	Use of DNA markers closely linked to a blast resistance gene, Piz, in rice (Oryza sativa L.) breeding	Breeding Research	7	143-146	2005	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33922	0	Amante-Bordeos A., Sitch L.A., Nelson R., Dalmacio R.D., Oliva N.P., Aswidinnoor H., Leung H.	Transfer of bacterial blight and blast resistance from the tetraploid wild rice Oryza minuta to cultivated rice, Oryza sativa	Theor. Appl. Genet.	84	345-354	1992	PI9	Pi9(t), Pi9(t)*, Pi9, Pi-9(t)
33923	0	Wang Z., Jia Y., Rutger J.N., Xia Y.	Rapid survey for presence of a blast resistance gene Pi-ta in rice cultivars using the dominant DNA markers derived from portions of the Pi-ta gene	Plant Breeding	126	36-42	2007	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33924	0	Pan Q.H., Wang L., Ikehashi H., Yamagata H., Tanisaka T.	Identification of two new genes conferring resistance to rice blast in the Chinese native cultivar 'Maowangu'	Plant Breeditig	117	27-31	1998	PI14,PI13	Pi14(t), Pi14(t)*, Pi14,Pi13(t), Pi13(t)*, Pi13
33925	0	Kiyosawa S., Yasuda H., Shintani I.	Field test for field resistance of rice varieties with different genotypes for true resistance to blast	Ann. Phytopath. Soc. Japan	43	508-516	1977	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33926	0	Xu C., Li Z., Xu S.	Joint Mapping of Quantitative Trait Loci for Multiple Binary Characters	Genetics	169	1045-1059	2005	PITQ6,PILM2,PITQ5	Pi-tq6, Pitq6,Pi-lm2, Pilm2, Pi lm2, Pib2,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5
33927	0	Shi X., Wang J., Bao Y., Li P., Xie L., Huang J., Zhang H.	Identification of the quantitative trait loci in Japonica rice landrace Heikezijing responsible for broad-spectrum resitance to rice blast	Phytopathology	100	822-829	2010		
33928	0	Zenbayashi K., Ashizawa T., Koizumi S.	Mapping of the Pi24(t) conferring partial resistance to rice blast in the rice cultivar Chubu 32	The phytopathological Society of Japan	68	178-178	2002	PI34	Pi34, RMg71, Pi24(t)
33929	0	Wang Z.H.	Marker-assisted selection molecular mapping and cloning of the rice blast resistance genes	Chinese Bulletin of Life Sciences	17	183-188	2005		
33930	0	Rahim H.A., Bhuiyan M.A.R., Lim L.S., Sabu K.K., Saad A., Azhar M., Wickneswari R.	Identification of quantitative trait loci for blast resistance in BC2F3 and BC2F5 advanced backcross families of rice	Genetics and Molecular Research	11	3277-3289	2012	PIR2-3,PIRF2-1	Pir2-3, Pir2-3(t),Pirf2-1, Pirf2-1(t)
33931	0	Kito H., Zenbayashi-Sawata K., Koizumi S., Nakajima T.	Responses of a near isogenic line with the field resistance gene Pi34 to rice blast	The phytopathological Society of Japan	74	191-192	2008	PI34	Pi34, RMg71, Pi24(t)
33932	0	Kobayashi N., Telebanco-Yanoria M.J., Tsunematsu H., Kato H., Imbe T., Fukuta Y.	Development of New Sets of International Standard Differential Varieties for Blast Resistance in Rice (Oryza sativa L.)	JARQ	41	31-37	2007	PIZT,PIZ5,PIZ	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33935	0	Cho Y.C., Kwon S.W., Choi I.S., Lee S.K., Jeon J.S., Oh M.K., Roh J.H., Hwang H.G., Yang S.J., Kim Y.G.	Identification of Major Blast Resistance Genes in Korean Rice Varieties (Oryza sativa L.) Using Molecular Markers	J. Crop Sci. Biotech.	10	265-276	2007	PITA,PIT,PIA,PIZ5,PII,PI5,PIB,PIZ,PIK	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi a, Pia, Pi-a, Pia-1, Pia-2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi i, Pii, Pi-i, Pii(t),Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33936	0	Kito H., Zenbayashi-Sawata K., Koizumi S., Nakajima T.	Control Effects of the Field Resistance Gene on Infection with Rice Blast Disease	Ann, Rept. Plant Prot. North Japan	60	25-29	2009	PI34	Pi34, RMg71, Pi24(t)
33937	0	Fukuta Y.	Blast Research Network for Stable Rice Production under Unfavorable Environment Condition	5th International Crop Science Congress proceedings		-	2008		
33938	0	Yoshida K., Saitoh H., Fujisawa S., Kanzaki H., Matsumura H., Yoshida K., Tosa Y., Chuma I., Takano Y., Win J., Kamoun S., Terauchi R.	Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae	Plant Cell	21	1573-1591	2009	PIKP	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2
33939	0	Utami D.W., Barnita K., Yuriah S., Hanarida I.	Nucleotide Base Variation of Blast Disease Resistance Gene Pi33 in Rice Selected Broad Genetic Background	J. Biosci.	18	123-128	2011	PIR4,PIR7,PI33	Pir4,Pir7,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33940	0	Sharma T.R., Rai A.K., Gupta S.K., Vijayan J., Devanna B.N., Ray S.	Rice Blast Management Through Host-Plant Resistance: Retrospect and Prospects	Agric Res	1	37-52	2012	PBR*,PI38,PI44,PIKS,PI18,PI21,PI20,PI31,PI47,PI48,PI32,PI34,PI39,PI62,PI41,PI42,PI6,PI157,PI12,PIKM,PIG,PILM2,PITQ6,PIGD2,PIGD3,PICO39,PITA,PIK,PIZ,PB1,PITQ5,PI,PIKG,MPI,PIZH,PI8,PI10,PI26,PIKP,PI5,PI40,PI16,PI19,PI17,PI23,PI26,PI28,PI27,PI29,PIIS1,PI15,PI13,PI39,PII2,PIF,PIKUR2,PISE1,PID1,PI3,PI22,PIKUR1,PITP,PIY2,PI27,PI33,PIGD1,PI67,PI35,PI14,PIIS2,PID2,PIGM,PII,PI36,PIT,PIY1,PI21,PI37,PI9,PI1,PISH,PI12,PIQ1,PIKH	PBR*,Pi38, Pi-38,Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi-ks, Pi-s, Pik-s, Piks,Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi20, Pi20(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi47, Pi47(t),Pi48, Pi48(t),Pi-32(t), Pi32(t)*, Pi32(t),Pi34, RMg71, Pi24(t),Pi39(t), Pi39,Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi41(t), Pi41,Pi42(t), Pi-42(t),Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi157*, Pi157(t)*, Pi-157, Pi157,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi-g(t),Pi-lm2, Pilm2, Pi lm2, Pib2,Pi-tq6, Pitq6,Pi-GD-2(t), PiGD-2(t),Pi-GD-3(t), PiGD-3(t),PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pb1, Pbst, RMG58.,Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi(t)*, Pi(t),Pikg, Pik-g,MPi z(Rb6), Rb6, MPiz,Pizh,Pi8, Pi-8,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi26(t), Pi26,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi16(t), Pi16, Pi-16(t),Pi19(t), Pi14, Pi19,Pi17(t), Pi17, Pi-17(t),Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi26(t), Pi-26(t),Pi28(t), Pi-28(t),Pi27(t), Pi-27(t),Pi-29(t), Pi29(t),Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi15(t), Pi15, RMg34.,Pi13(t), Pi13(t)*, Pi13,Pi39(t), Pi39,Pi i2, Pii2, Pii2(t),Pi f, PIF, Pif, RMg3, Pi-f,Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi-tp(t), Pitp(t), Pi-tp,Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi27, Pi27(t), Pi-27(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi-GD-1(t), PiGD1, PiGD-1(t),Pi67(t)*, Pi67, Pi67(t),Pi35(t),Pi14(t), Pi14(t)*, Pi14,Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t),Pigm(t), Pi-gm(t), Pigm,Pi i, Pii, Pi-i, Pii(t),Pi36(t), Pi36,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi-y1(t), Pi-y(t), Piy1(t),pi21, rMg40,Pi37(t), Pi37,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi1, Pi-1, Pi1-5C, Pi1-6C,Pi sh, Pish, Pi-sh, Pish(t),Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33941	0	Tsunematsu H., Yanoria M.J.T., Ebron L.A., Hayashi N., Ando I., Kato H., Imbe T., Khush G.S.	Development of monogenic lines of rice for blast resistance	Breed. Sci.	50	229-234	2000	PI19	Pi19(t), Pi14, Pi19
33942	0	Jena K.K.	The species of the genus Oryza and transfer of useful genes from wild species into cultivated rice, O. sativa	Breed. Sci.	60	518-523	2010		
33943	0	Kiyosawa S.	Studieis on inheritance of resistance of rice varieties to blast 3. Inheritance of resistance of a rice variety Pi No.1 to the blast fungus	Japan. J. Breeding	16	243-250	1996	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33944	0	Odjo T., Ahohuendo B.C., Onasanya A., Akator K., S?r?	Analysis of Magnaporthe oryzae population structure in Benin	Afr J Agric Res	6	6183-6188	2011	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
33945	0	Hua L., Wu J., Chen C., Wu W., He X., Lin F., Wang Li., Ashikawa I., Matsumoto T., Wang L., Pan Q.	The isolation of Pi1, an allele at the Pik locus which confers broad spectrum resistance to rice blast	Theor Appl Genet (Published online)	125	1047-1055	2012	PI1,PIK	Pi1, Pi-1, Pi1-5C, Pi1-6C,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33946	0	Deng Y., Zhu X., Xu J., Chen H., He Z.	Map-Based Cloning and Breeding Application of a Broad-Spectrum Resistance Gene Pigm to Rice Blast	Advances in Genetics, Genomics and Control of Rice Blast Disease		161-171	2009	PIGM	Pigm(t), Pi-gm(t), Pigm
33947	0	Pan Q.H., Wang L., Tanisaka T.	A new blast resistance gene identified in the Indian native rice cultivar Aus373 through allelism and linkage tests	Plant Pathol.	48	288-293	1999	PI16	Pi16(t), Pi16, Pi-16(t)
33949	0	Namai T., Fukushima R., Ishibashi Y., Ohba A., Togashi J.	Variation in pathogenicity of incompatible races of rice blast fungus, Pyricularia oryzae Cavara on panicles of newly developed rice cvs. Haenuki and Domannnaka	Ann. Phytopathol. Soc. Jpn.	63	37-43	1997	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
33951	0	Utami D.W., Moeljopawiro S., Aswidinnoor H., Setiawan A., Guhardja E.	QTL analysis of blast resistance trait in interspecific population between IR64 and Oryza rufipogon	Jurnal Bioteknologi Pertanian	10	7-14	2005	PIR9-2,PIR2-3,PIR12-2,PIRF2-1	Pir9-2, Pir9-2(t),Pir2-3, Pir2-3(t),Pir12-2, Pir12-2(t),Pirf2-1, Pirf2-1(t)
33952	0	Zenbayshi-Sawata K., Ashizawa T., Koizumi S.	Mapping of the Pi24(t) conferring partial resistance to rice blast using large number of F3 population	The phytopathological Society of Japan	69	234-234		PI34	Pi34, RMg71, Pi24(t)
33954	0	Silue D., Notteghem J.L., Tharreau D.	Evidence of a gene-for-gene relationship in the Oryza sativa-Magnaporthe grisea pathosystem	Phytopathology	82	577-580	1992		
33956	0	Ahn S.N., Kim Y.K., Hong H.C., Han S.S., Choi H.C., Moon H.P., McCouch S.R.	Molecular mapping of genes for resistance to a Korean isolates of rice blast	8th SABRAO Congress and Annual Meeting of Korean Breed. Soc. Proceedings		435-436	1997	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
33957	0	Lopez-Gerena J., Tohme J., Correa-Victoria F.J., Martinez C.P., Hulbert S., Zeigler R.	Mapping QTL's and candidate genes associated with durable resistance to rice blast	CIAT poster			2007		
33959	0	Huang D.Y.	Characterization and Mapping of Rice Blast Resistance Genes	PhD thesis Chinese Academy of Agricultural Sciences			2005	PIX,PIY1,PIY2	Pi-x(t), Pi-x1,Pi-y1(t), Pi-y(t), Piy1(t),Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t)
33960	21781278	Li Y., Xia Q., Kou H., Wang D., Lin X., Wu Y., Xu C., Xing S., Liu B.	Induced Pib Expression and Resistance to Magnaporthe grisea are Compromised by Cytosine Demethylation at Critical Promoter Regions in Rice.	J Integr Plant Biol	53(10)	814-823	2011	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33961	22058403	Gupta S.K., Rai A.K., Kanwar S.S., Chand D., Singh N.K., Sharma T.R.	The single functional blast resistance gene Pi54 activates a complex defence mechanism in rice.	J. Exp. Bot.	63(2)	757-72	2012	PITA,PIZ,_,POXN,LOX11,LAC11,WRKY102,RPBF,PI36,PIKH,PIZT,PI21,_	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,,poxN, prx38, prxRPN, RPN, poxN/PRX38,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2,Lac, OsLAC11, LAC10, OsLAC10,OsWRKY102,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,Pi36(t), Pi36,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,pi21, rMg40,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2
33962	22270148	Zhu X., Chen S., Yang J., Zhou S., Zeng L., Han J., Su J., Wang L., Pan Q.	The identification of Pi50(t), a new member of the rice blast resistance Pi2/Pi9 multigene family.	Theor. Appl. Genet.	124(7)	1295-304	2012	PI50,PIZ,PI9,PI40,PIGM	Pi50(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pigm(t), Pi-gm(t), Pigm
33963	22415685	He X., Liu X., Wang L., Wang L., Lin F., Cheng Y., Chen Z., Liao Y., Pan Q.	Identification of the novel recessive gene pi55(t) conferring resistance to Magnaporthe oryzae.	Sci China Life Sci	55(2)	141-9	2012	PI55-2,PI55-1	pi55-2, pi55(t),pi55-1, pi55(t), OsIRL4
33964	22916136	Gupta S.K., Rai A.K., Kanwar S.S., Sharma T.R.	Comparative analysis of zinc finger proteins involved in plant disease resistance.	PLoS ONE	7(8)	e42578	2012	PIB,PIK	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
33965	21809091	Mao B., Cheng Z., Lei C., Xu F., Gao S., Ren Y., Wang J., Zhang X., Wang J., Wu F., Guo X., Liu X., Wu C., Wang H., Wan J.	Wax crystal-sparse leaf2, a rice homologue of WAX2/GL1, is involved in synthesis of leaf cuticular wax.	Planta	235(1)	39-52	2011	_,_,WSL1,_,WSL2	OsLACS1,KCR1, OsKCR1,WSL1, FAE', OsFAE1', OsCER6,FATB1, OsFATB1,OsGL1-1, WSL2
33966	21717056	Guo L., Li M., Wang W., Wang L., Hao G., Guo C., Chen L.	Over-expression in the nucleotide-binding site-leucine rich repeat gene DEPG1 increases susceptibility to bacterial leaf streak disease in transgenic rice plants.	Mol. Biol. Rep.	39(4)	3491-504	2012	PI37	Pi37(t), Pi37
33967	0	Saka N., Terashima T., Kudo S., Kato T., Sugiura K., Endo I., Shirota M., Inoue M., Otake T.	A New High Field Resistant Variety Mine-haruka for Rice Blast	Res.Bull.Aichi Agric.Res.Ctr.	39	95-109	2007		
33968	0	Saka N., Fukuoka S., Terashima T., Kudo S., Shirota M., Ando I., Sugiura K., Sato H., Maeda H., Endo I., Kato H., Inoue M.	Breeding of A New Rice Variety Chubu 125 with High Field Resistance for Blast and Excellent Eating Quality	Res.Bull.Aichi Agric.Res.Ctr.	42	171-183	2010		
33969	0	Kiyosawa S.	Inheritance of resistance of the rice variety Pi No.4 to blast	Japan. J. Breeding	17	165-172	1967	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
33970	0	Kiyosawa S., Ling Z.	Genetic studies on rice blast relationships	In: Major fungal diseases of rice recent advances. S. Sreenivasaprasad and R. Johnson (eds.), Kluwer Academic Publishers, The Netherlands.		145-162	2001	PI13,PI13,PI14,PI14,PI11	Pi13(t), Pi13(t)*, Pi13,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pi14(t), Pi14(t)*, Pi14,Pi-11(t)*
33971	0	Zhou H.P., Zhan X.D., Cai R.Y., Cheng S.H., Cao L.Y.	Breeding of Rice Restorer Lines Carrying Blast Resistance Gene Pi25 by MarkerQAssisted Selection	Chinese Journal of Rice Science	22	590-596	2008		
33972	0	Li D., Xu M.H., Yao C.X., Long S.Q.	SSR identification of rice blast resistance gene Pi-d(t) in the core germplasm of Yunnan indigenous rice varieties.	Southwest China Journal of Agricultural Sciences	21	1583-1586	2008		
33973	0	Madhav M.S., Plaha P., Singh N.K., Sharma T.R.	Molecular Characterization of a Genomic Fragment Containing Pi-kh Gene from the Genomic Library of Indica Rice Line Tetep	Journal of Phytopathology	157	322-324	2009	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33974	0	Lee S., Wamishe Y., Jia Y., Liu G., Jia M.H.	Mapping Two Major Resistance Genes In An Indica Cultivar Zhe733 To The Race IE-1k Of Magnaporthe oryzae	In: Plant & Animal Genomes XVII Conference		-	2009	PI42,PI43	Pi42(t), Pi-42(t), Pi42,Pi43, Pi43(t), Pi-43(t)
33975	0	Collemare J., Abdou R., Gagey M.J., Song Z., Bakeer W., Cox R., Ballini E., Tharreau D., Lebrun M.H.	Fungal secondary metabolites as effectors of pathogenicity: role in the complex interplay between rice and Magnaporthe grisea.	In: Proc. EUROPEAN CONFERENCE ON FUNGAL GENETICS 10th		-	2010	PI33	Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
33976	0	Chauhan R., Durfee T., Holt J., Blattner F., Leong S.	Exceptional haplotype divergence at a rice blast resisance locus, Pi-CO39(t) flanked by clusters of serpin genes	In: Abstr. Plant & Animal Genomes XI Conference		-	2003		
33977	0	Huang L.	Mapping of Broad-spectrum and Durable Blast Resistance Genes in Rice Cultivar Xiangzi3150	Thesis, Hunan Agricultural University, China		-	2010	PI47,PI48	Pi47, Pi47(t),Pi48, Pi48(t)
33978	0	Chen X.W., Xu J., Li S., Li X., Zhu L.	Towards cloning a blast resistance gene Pi-d2(t) in rice Digu.	In: Proc. General Meeting Rice Blast in China, Kunming.		1-1	2001	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t)
33979	0	Wu J., Zhuang J., Fan Y., Li D., Leung H.	Effectiveness of a resistance gene from Gumei 2 against leaf and neck blastunder field conditions in China	RGN	16	90-91	1999	PI25,PI24	Pi25, Pi25(t),Pi24, Pi24(t)
33980	0	Kiyosawa S.	Gene analysis for blast-resistance.	Oryza (Cuttack)	18	196-203	1981		
33982	0	Curley J., Sim S.C., Jung G., Leong S., Warke S., Barker R.E.	QTL mapping of gray leaf spot resistance in ryegrass, and synteny-based comparison with rce blast resistance genes in rice	In: Molecular breeding of rorage and Turf. Hopkins A. et al. (eds.), Kluwer Academic Publishers, The Netherlands.	11	37-46	2004		
33983	0	Hsieh S.C., Lin M.H., Liang H.L.	Genetic analysis in rice. VIII. Inheritance of resistance to races 4, 22,and 25 of Pyricularia oryzae.	Bot. Bull. Acad. Sin.	8	255-260	1967	PI22	Pi22, Pi-22, Pi 22
33984	0	Chen D.X., Chen X.W., Lei C.L., Ma B.T., Wan Y.P., Li S.G.	Rice Blast Resistance of Transgenic Rice Plants with Pi-d2 Gene	Rice Science	17	179-184	2010	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t)
33986	0	Rao Z.M., Wu J.L., Zhuang J.Y., Cha R.Y., Fan Y.Y., Leung H., Zhengh K.L.	Genetic dissection of blast resistances at different growth stages in rice (Oryza sativa L.)	RGN	19	92-93	2002		
33987	0	Toriyama K., Yunoki T., Shinoda H.	Breeding rice varieties for resistance to blast. II. Inheritance of high field resistance of Chugoku 31.	Japan J. Breed	18 (suppl.1)	145-146	1968		
33989	0	Zhuang J., Wu J., Chai R., Fan Y., Jin M., Leung H., Zheng K.	DNA markers based gene mapping for leaf and neck blast resistance and verification of gene effects in rice.	In: Abstr. General Meeting Int. Program Rice Biotechnol. Phuket, Thailand.		297-297	1999		
33990	0	Sharma T.R., Rai A.K., Gupta S.K., Singh N.K.	Broad-spectrum blast resistance gene Pi-kh cloned from rice line Tetep designated as Pi54.	J. Plant Biochem. Biotechnol.	19	87-89	2010	PIK,PIKH	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
33991	0	Lee S., Costanzo S., Lee S., Dai Y., Correll J., Roy-Chodhury M., Cartwright R., Lee F.	An update of genetic studies of disease resistance genes and their utilizations for rice protection	In: Proc. Rice Technical Working Group Meeting		-	2010	PI43,PI42	Pi43, Pi43(t), Pi-43(t),Pi42(t), Pi-42(t), Pi42
33992	0	Yaegashi H., Asaga K., Yamada M.	Presumed genotypes for true resistance of recommended rice varieties to rice blast.	Bull. Tohoku Natl. Agric. Exp. Stn.	68	1-19	1983		
33993	0	Kim D.M., Ju H.G., Kang J.W., Han S.S., Ahn S.N.	A new rice variety 'Hwaweon 4' with durable resistance to rice blast.	Korean Journal of Breeding Science	43	620-624	2011		
33995	0	RoyChowdhury M., Jia Y., Cartwright R.D.	Analysis of rice blast resistance genes in the national small grains collection (NSGC)	Ph.D. Thesis, University of Arkansas, USA		-	2011	PIX	Pi-x(t), Pi-x1
33996	0	Zhuang J.Y., Wu J.L., Chai R.Y., Fan Y.Y., Jin M.Z., Leung H., Zheng K.L.	Rapid identification of resistance gene analogs linked to two blast resistance genes in rice	RGN	15	125-127	1998	PI25,PI24	Pi25, Pi25(t),Pi24, Pi24(t)
33997	0	McCouch S.R., Nelson R.J., Tohme J., Zeigler R.S.	Mapping of Blast Resistance Genes in Rice	In: Rice Blast Disease. Zeigler et al. (eds.), IRRI, Manila, Philippines		167-186	1994	PIIS1	Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1
33998	0	Chen J.	Fine Mapping and Map-based Cloning of a Blast-resistance Gene Pi-y43(t) from Japonica Rice Yunyin	Thesis, Fujian Agriculture and Forestry University, China		-	2011	PIB2,PIB	Pib2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
33999	0	RoyChowdhury M.	Characterization of Rice Blast Resistance Gene Pi-z(t) in Rice Germplasms using DNA markers and Pathogenicity Assays	In: 87th SDAPS Meeting, Orlando, Florida, USA		-	2010		
34000	0	Khush G.S.	Breeding rice for multiple disease and insect resistancce	In: Rice inprovement in China and other Asian countries IRRI & CAAS		219-238	1980	PI22	Pi22, Pi-22, Pi 22
34001	0	Phaitreejit k., Srikaew E., Jantasuriyarat C., Sriwongchai T., Kate-ngam S.	Screening Thai landrace rice for blast resistance gene Pi9, Pi36, Pigm(t) using DNA markers	Thai J. Genet.	4	52-62	2011	PIGM	Pigm(t), Pi-gm(t), Pigm
34002	0	He Z., Deng Y., Xu J., Chen H., Zhu X.	Functional and Evolutionary Analysis of the Broad Spectrum Resistance Locus Pigm(t) to Rice Blast Magnorpathe oryzae	In: Abstr. The 4th International Rice Blast Conference		-	2007	PIGM	Pigm(t), Pi-gm(t), Pigm
34003	0	Yang J.Y., Chen S., Zeng L.X., Li Y.L., Chen Z., Li C.Y., Zhu X.Y.	Race Specificity of Major Rice Blast Resistance Genes to Magnaporthe grisea Isolates Collected from indica Rice in Guangdong, China	Rice Science	15	311-318	2008		
34004	0	Liu, Liu B., Zhu X., Jan L., Hei L.	Fine mapping and molecular marker development for Pi46 (t), a new NBS-LRR gene conferring broad-spectrum resistance to M. oryzae in rice.	In preparation		-			
34005	0	Fukuta Y., Yanoria M.J.T., Tsunematsu H., Imbe T., Kato H., Ebron L.A., Khush G.V.	Development of international standard differential set for blast resistance in rice (Oryza sativa L.)	4th International Crop Science Congress proceedings		-	2004		
34006	0	Kato H., Imb,e T., Tsunematsu H., Fukuta Y.	Developing rice blast differential lines and wvaluating partial resistance for the breeding of durable rice varieties in the tropics	In: IRRI Limited Proceedings No.10: Blessings from nature and science for the future. Manila, Philippines.		31-44	2004	PI19	Pi19(t), Pi14, Pi19
34008	0	Li S.G., Ma Y.Q., Wang Y.P., Wang W.M., Zhou K.D., Zhu L.H.	Genetic analysis and mapping of blast resistance gene in indica rice cultivar Digu.	Progress in Natural Science	10	44-46	2000	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34009	0	Yu Z.H.	Molecular mapping of rice (Oryza sativa L.) genes via linkage to restriction fragment length polymorphism (RFLP) markers.	PhD Thesis, Cornell University, USA		-	1991		
34010	0	Kinoshita T.	Standardizationn of gene symbols and linkage maps in rice	Rice Genetics. IRRI, Manila, Philippines.		215-228	1986	PIIS1	Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1
34011	0	RoyChowdhury M., Jia Y., Jia M., Fjellstrom R., Cartwright R.D.	Identification of rice blast resistant gene Pi-z(t) in NSGC using DNA markers and pathogenicity assays	In: Abstr. 5th International Rice Blast Conference, Little Rock, Arkansas, USA		-	2010	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
34012	0	Lu J., Qianm H.R., Zhuang J.T., Lin H.X., Zheng K.L.	Identification of a RAPD marker linked to a blast resitance gene in Oryza sativa	Chinese Rice Research Newsletter	2	2-3	1994	PI11	Pi-11(t)*
34013	0	Lei C.L., Zhang G.M., Cheng Z.J., Ma J.T., Wang J.L., Xin A.H., Chen P., Xiao J.L., Zhang X., Liu Y.X., Guo X.P., Wang J., Zhai H.Q., Wan J.M.	Pathogenic Races and Virulence Gene Structure of Magnaporthe oryzae Population and Rice Breeding Strategy for Blast Resistance in Heilongjiang Province	Acta Agronomica Sinica	37	18-27	2011		
34014	0	Sharma T.R., Shankar P., Singh B.K., Jana T.K., Madhav M.S., Gaikwad K., Singh N.K., Plaha P., Rather R.	Molecular mapping of rice blast resistance gene Pi-kh in the rice variety Tetep.	J. Plant Biochem. Biotechnol.	14	127-133	2005	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
34017	0	Kiyosawa S.	Methods for tests and gene analyses of blast resistance of rice varieties.	Oryza (Cuttack)	13	1-32	1976	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34018	0	Wu J.L., Chai R.Y., Fan Y.Y., Li D.B., Zheng K.L., Leung H., Zhuang J.Y.	Clustering of Major Genes Conferring Blast Resistance in a Durable Resistance Rice Cultivar Gumei 2	Rice Science	11	161-164	2004	PI26	Pi26(t), Pi26
34019	0	Jia Y., Wang X., Costanzo S., Lee S.	Understanding the co-evolution of the rice blast resistance gene PI-TA and Magnaporthe oryzae avirulence gene AVR-PITA	In: Advances in Genetics, Genomics and Control of Rice Blast Disease. Wang G.L., Valent B. (eds.), Springer Science+Business Media B.V.		137-148	2009		
34020	0	Wood M.	Improving Rice, A Staple Crop Worldwide	Agricultural Research Magazine	58	4-7	2010	PI43,PI42	Pi43, Pi43(t), Pi-43(t),Pi42(t), Pi-42(t), Pi42
34021	0	Yang Q., Saito K., Yang P., Wang Q., Sunohara Y., Zheng F., Ye C., Kato A.	Molecular mapping of a new blast resistance gene Pi25(t) possessed in a Japonica rice cultivar, Oryza sativa L. cv. Yunxi 2.	In: Proc. General Meeting Rice Blast in China, Kunming.		49-55	2001	PI25	Pi25(t), Pi-25(t), RMg62
34023	0	Fukuta Y., Yanoria M.J., Mercado-Escueta D., Ebron L.A., Fujita Y., Araki E., Khush G.S.	Quantitative trait loci (QTL) reaction to rice blast isolates from Japan and the Philippines.	In: Proc. The 3rd International Rice Blast Conference		113-121	2004		
34024	0	Chen D.H., Nelson R.J., Wang G.L., Inukai T., Mackill D.J., Ronald P.C.	Characterization of blast resistance in the durably resistant rice cultivar Moroberekan	In: Advances in rice blast research. D. Tharreau et al. (eds.), Kluwer Academic Publishers, The Netherlands.		17-27	2000	PI7,PI44	Pi7, Pi-7(t), Pi7(t),Pi44(t)*, Pi44(t), Pi44, Pi-44(t)
34025	0	Silue D., Tharreau D., Notteghem J.L.	Genetic control of Magnaporthe grisea avirulence to rice cultivar Pi-No4 and K1.	In: Abstr. 6th International Congress of Plant Pathology, Montreal, Canada		159-159	1993		
34026	0	Saka N.	Marker-assisted pyramiding of field resistance genes Pb1, pi21 and Pi39 in rice.	In: 5th International Rice Genetics Symposium		-	2006	PI39	Pi39(t), Pi39
34028	0	Fukuoka S., Okuno K., Kawase M.	Patent application title: rice blast susceptibility gene pi21, resistance gene pi21 and uses thereof	US patent		-	2009	PI21	pi21, rMg40
34030	0	Inukai T., Nelson R.J., Zeigler R.S., Sarkarung S., Mackill D.J., Bonman J.M., Takamure I., Konoshita T.	Genetic analysis of blast resistance in tropical rice cultivars using near-isogenic lines	Rice Genetics III. IRRI, Manila, Philippines.		447-450	1996		
34031	0	Pan Q., Tanisaka T., Okumoto Y., Yamagata H.	Gene analysis for the blast resistance of a Yunnan local variety, Maowanggu.	Japan. J. Breed.	43 (Suppl. 2)	101-101	1993	PI13,PI14	Pi13(t), Pi13(t)*, Pi13,Pi14(t), Pi14(t)*, Pi14
34033	0	Kinoshita T.	B. Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups II. Report from coordinator: Linkage mapping using mutant genes in rice	RGN	15	13-74	1998	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
34034	0	Zhuang J.Y., Chai R.Y., Ma W.B., Lu J., Jin M.Z., Zeng K.L.	Genetic analysis of the blast resistance at vegetative and reproductive stages in rice	RGN	14	62-63	1997	PI25,PI24	Pi25, Pi25(t),Pi24, Pi24(t)
34035	0	Yang A.	Identification and Fine Mapping of Blast Resistance Genes in Rice Cultivar 9311	Thesis, Chinese Academy of Agricultural Sciences, China		-	2010		
34036	0	Kiyosawa S.	The inheritance of blast resistance transferred from some indica varieties in rice.	Bull. Nat. Inst. Agr. Sci	23	69-96	1972		
34037	0	Ise K.	Reexamination of linkage relationships between blast resistance genes Pii and Piz using near-isogenic lines (NILs) of rice.	IRRN	17	8-9	1993		
34038	0	Lee E.J., Cho S.Y.	Variation in races of rice blast disease and varietal resistance in Korea	Paper presented at the Focus on Irrigated Rice. Seoul, Korea.		27-31	1990	PI18	Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18
34039	0	Lei C., Wang J., Mao S., Zhu L., Ling Z.	Study on allelism between blast resistance gene Pi-zhitj in indica variety Zhaiyeqing 8iZYQSj and known blast resistance gene	Rice Science	5	2-3	1997	PI11	Pi11(t)*(Pi zh), Pi11(t)*, Pizh, Pi-zh, Pi-zh*, Pi-zh(t), Pi-11(t), Pi-11, Pi11
34040	0	Araki E., Yanoria M.J.T., Ebron L.A., Mercado-Escueta D., Takai T., Fukuta Y.	Mapping of a rice blast resistance gene Pish.	Breeding Research	5 (Suppl. 2)	333-333	2003	PISH	Pi sh, Pish, Pi-sh, Pish(t)
34041	0	Fukuta Y.	The Pish blast resistance gene of rice (Oryza sativa L.) is located on the long arm of chromosome 1	JIRCAS Working Report Research Highlights		-	2004	PISH	Pi sh, Pish, Pi-sh, Pish(t)
34042	0	Zenbayashi-Sawata K., Ashizawa T., Koizumi S.	Pi34-AVRPi34: a new gene-for-gene interaction for partial resistance in rice to blast caused by Magnaporthe grisea	Journal of General Plant Pathology	71	395-401	2005	PI34	Pi34, RMg71, Pi24(t)
34044	0	Liu X.Q., Li Y.Y., Wang L.Y., Liu X.Q., Wang C.T., Wang L., Pan Q.H.	The effect of the rice blast resistance gene Pi36 on the expression of disease resistance-related genes	Chinese Science Bulletin	55	1881-1888	2010	PI36	Pi36(t), Pi36
34045	0	Ou S.H.	Part III. FUNGUS DISEASE FOLIAGE DISEASE 1. Blast	Rice Disease Second Edition. Commonwealth Mycological Institute UK		109-200	1985	PI22	Pi22, Pi-22, Pi 22
34046	0	Li X., Mao X., Xing D., Wnag X.	Research progress in rice blast resistance genes	Molecular Plant Breeding	1	725-730	2003		
34047	0	Huang H., Huang L., Feng G., Wang S., Wang Y., Liu J., Jiang N., Yan W., Xu L., Sun P., Li Z., Pan S., Liu X., Xiao Y., Liu E., Dai L., Wang G.	Identification of Two Major Resistance Genes to Rice Blast in the Durably Resistant Rice Cultivar Xiangzi 3150	In: Abstr. Plant Genomics in China X		-	2009		
34048	0	Ling Z., Wang J., Pan Q., Li M., Huang Q., Qiu Z.	Classification for blast resistance of some Japonica type varieties from Yunnan province	Scientia Agricultura Sinica	23	5-11	1990	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34050	0	Jena K.K., Jeung J.U., Kim B.R., Han S.S., Suh J.P., Cho Y.C., Roh J.H., Kim Y.G., Brar D.S.	A New Gene, Pi40 Confers Broad-Spectrum Blast Disease Resistance And Useful In Marker-Assisted Selection (MAS) For Blast Resistance In Rice	In: Abstr. Plant & Animal Genomes XVI Conference		-	2008	PI40	Pi40(t), Pi40, pi40, Pi-40(t), Pi-40
34051	0	Zhang J.W., Tan Y.L., Hong R.K., Fan J.H., Luo Q., Zeng Q.C.	Genetic Analysis and Gene Mapping of Rice Blast Resistance in japonica Variety Ziyu 44	Chinese Journal of Rice Science	23	31-35	2009	PIZY	Pi-zy, Pi-zy(t)
34052	0	Kim D.M., Ju H.G., Yang P., Han S.S., Roh J.H., Ahn S.N.	Mapping and race specific reaction of the resistance gene Pi45(t) in rice.	Korean Journal of Breeding Science	43	42-49	2011		
34053	0	Chen H.Q., Chen Z.X., Ni S., Zuo S.M., Pan X.B., Zhu X.D.	Pyramiding Three Genes with Resistance to Blast by MarkerQAssisted Selection to Improve Rice Blast Resistance of Jin 23B	Chinese Journal of Rice Science	22	23-27	2008		
34054	0	Cho Y.C., Choi M.K., Baek J.P., Suh J.P., Hong H.C., Kim Y.G., Koizumi S., Jena K.K., Choi H.C., Hwang H.G.	Resistant genes and their effects to rice blast in isogenic lines of genetic background of Chucheongbyeo and Suweon345	RGN	20	101-104	2003	PI44,PITQ5	Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5
34056	0	Virmani S.S.	Disease and Insect Resistance in Hybrid Rice	In: Monographs on Theoretical and Applied Genetics 22: Heterosis and Hybrid Rice Breeding. Virmani S.S. IRRI, Springer-Verlag, Berlin Heidelberg, Germany		111-118	1994		
34057	0	Wamishe Y., Jia Y., Jia M., Liu G.	Identification of novel blast resisitance genes in rice cultivar ZHE733	In: Proc. Rice Technical Working Group Meeting		-	2006		
34058	0	Chen D., Zeigler R.S., Ahn S.W., Nelson R.J.	Phenotypic characterization of the rice blast resistance gene Pi2(t).	Plant Dis.	80	52-56	1996	PIZ	Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
34059	0	Hsieh S.C., Chien C.C.	Recent status of rice breeding for blast resistance in Taiwan with special regard to races of the blast fungus.	Symposium on Rice Disease and their Control by Growing Resistant Varieties and Other Measures. Tokyo; Agriculture, Forestry and Fisheries Research Council.		68-81	1967	PI22	Pi22, Pi-22, Pi 22
34060	0	Kiyosawa S.	Establishment of differential varieties for pathogenicity test of rice blast fungus	RGN	1	95-96	1984	PIKM,PIKP,PIKS,PIK	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi-ks, Pi-s, Pik-s, Piks,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
34061	0	Koide Y., Kobayashi N., Xu D., Fukuta Y.	Blast resistance genes and their selection markers in rice (Oryza sativa L.).	In: Development and characterization of blast resistance using differential varieties in rice. JIRCAS Working Report No. 63. JIRCAS, Tsukuba, Japan.		95-122	2009		
34062	0	Sharma T.R., Jana T.K., Shankar P., Singh B.K., Plaha P., Gaikwad K., Singh N.K.	Development of molecular makers for blast-resistance genes in Oryza sativa.	In: Abstr. The second international congress on plant physiology, New Delhi		484-484	2003		
34064	0	Terashima T., Fukuoka S., Saka N., Kudo S.	Mapping of a blast field resistance gene Pi39(t) of elite rice strain Chubu 111.	Plant Breeding	127	485-489	2008	PI39	Pi39(t), Pi39
34065	0	Jia Y., Correll J.C., Lee F.N., Eizenga G.C., Yang Y., Gealy D.R., Valent B., Zhu Q.	Understanding molecular interaction mechanisms of the Pi-ta rice resistance genes and the rice blast pathogen.	Phytopathology	91 (Suppl. 6)	44-44	2001	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
34066	10887695	J L Wang, C L Lei, W R Jiang, Z Z Ling	[Genetic studies of blast resistance of indica variety Zhefu 802].	Yi Chuan Xue Bao	27(3)	235-9	2000		
34067	11055122	X H Tan, X W Chen, S G Li, S G Liu, L H Zhu	[Gene analysis of blast resistance in an indica variety Digu].	Yi Chuan Xue Bao	27(8)	701-5	2000	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34068	11059273	S G Li, Y P Wang, H Y Li, K D Zhou, L H Zhu	[Utilization of a microsatellite marker to identify rice blast resistance gene in two segregating populations].	Sheng Wu Gong Cheng Xue Bao	16(3)	324-7	2000	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34069	12561228	Jian-Fei Wang, Xin-Jian He, Hong-Sheng Zhang, Zhi-Yi Chen	[Genetic analysis of blast resistance in japonica rice landrace heikezijing from Taihu region].	Yi Chuan Xue Bao	29(9)	803-7	2002		
34070	15973995	Xue-Wei Chen, Shi-Gui Li, Yu-Qing Ma, Han-Yun Li, Kai-Da Zhou, Li-Huang Zhu	[Marker-assisted selection and pyramiding for three blast resistance genes, Pi-d(t)1, Pi-b, Pi-ta2, in rice].	Sheng Wu Gong Cheng Xue Bao	20(5)	708-14	2004	PID1	Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t)
34071	17572362	S P Kumar, V Dalai, N K Singh, T R Sharma	Comparative analysis of the 100 kb region containing the Pi-k(h) locus between indica and japonica rice lines.	Genomics, proteomics & bioinformatics	5(1)	35-44	2007	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
34072	18271255	Shu-Li Wang, Li-Yun Li, Jun-Jun Shang, Wang J., Guo-Zhen Liu	[Expression and autophosphorylation analysis of Xa21 and Pi-D2 protein kinases in Saccharomyces cerevisiae].	Wei Sheng Wu Xue Bao	47(6)	1009-12	2007	PID2	Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t)
34073	18332008	Zhou M., Shi-Hu Yang, Lan Y., Yu-Kuan Jin, Jian-Min Wan	[Initial functional analysis of the promoter region and coding region of Pib gene in transgenic rice].	Yi Chuan	30(3)	367-72	2008	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34074	18349514	Ming-Zhi Yang, Zai-Quan Cheng, Shan-Na Chen, Qian J., Ling-Ling Xu, Xing-Qi Huang	A rice blast-resistance genetic resource from wild rice in Yunnan, China.	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	33(6)	589-95	2007		
34075	18443412	Soon-Wook Kwon, Young-Chan Cho, Yeon-Gyu Kim, Jung-Pil Suh, Ji-Ung Jeung, Jae-Hwan Roh, Sang-Kyu Lee, Jong-Seong Jeon, Sae-Jun Yang, Young-Tae Lee	Development of near-isogenic Japonica rice lines with enhanced resistance to Magnaporthe grisea.	Mol. Cells	25(3)	407-16	2008	PIA,PITA,PII,PIB,PI5	Pi a, Pia, Pi-a, Pia-1, Pia-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi i, Pii, Pi-i, Pii(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2
34076	22196797	Liu X.Q., Zhang D., Zhang X.M., Wang C.T., Liu X.Q., Tan Y.P., Wu Y.H.	Study on the interaction between methyl jasmonate and the coiled-coil domain of rice blast resistance protein Pi36 by spectroscopic methods.	Spectrochim Acta A Mol Biomol Spectrosc	88	72-6	2012	PI36	Pi36(t), Pi36
34077	22592658	Das A., Soubam D., Singh P.K., Thakur S., Singh N.K., Sharma T.R.	A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae.	Funct. Integr. Genomics	12(2)	215-28	2012	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
34078	22667447	Roychowdhury M., Jia Y., Jia M.H., Fjellstrom R., Cartwright R.D.	Identification of the rice blast resistance gene Pib in the National Small Grains Collection.	Phytopathology	102(7)	700-6	2012	PIB	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy
34079	22779744	Wang Y., Wang D., Deng X., Liu J., Sun P., Liu Y., Huang H., Jiang N., Kang H., Ning Y., Wang Z., Xiao Y., LIU X., Liu E., Dai L., Wang G.L.	Molecular Mapping of the Blast Resistance Genes Pi2-1 and Pi51(t) in the Durably Resistant Rice 'Tianjingyeshengdao'.	Phytopathology	102(8)	779-86	2012	PI51,PIZ	Pi51(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2
34080	0	Rani M.G., Adilakshmi D.	Genetic analysis of blast resistance in rice with simple sequence repeats (SSR)	Journal of Crop Improvement	25	232-238	2011		
34081	0	Fukuoka S., Okuno K., Kawase M.	Patent application title: Rice blast-susceptible gene Pi21 and resistance gene pi2, and utilization thereof, Publication number: 2011-160806	Japanese patent		-	2011		
34082	0	Fukuda Y., Araki E., Tsunematsu H., Kato H., Imbe T., Yanoria M.J., Ebron L.A., Khush G.G.	Development of new international standard differential variety series to integrate blast resistance of rice (Oryza sativa L.)	JIRCAS Research Highlights	11	-	2003		
34083	0	Lopez J., Tohme J., Correa F., Martinez C., Hulbert S., Zeigler R., Gallego G., Escobar F., Prado G., Aricapa G.	Identification of molecular markers associated with the durable blast resistance genes in the commercial rice cultivar Oryzica Llanos 5	CIAT OUTPUT 2. Chatracterizing rice pest and the genetics of resistance		123-126	2005		
34085	0	Inukai T., Nelson R.J.	Mapping for blast resistance gene Pi-3 derived from rice cultivar Pai-kan-tao.	The Crop Science Society of Japan, Hokkaido danwakai kaihou	35	54-55	1994	PI3	Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2
34086	0	Utami D.W., Moeljopawiroa S., Aswidinnoor H., Setiawan A., Hanarida I.	Blast resistance genes in wild rice Oryza rufipogon and rice cultivar IR641	Indonesian Journal of Agriculture	1	71-76	2008	PIR2-3,PIR9-2,PIR12-2,PIRF2-1	Pir2-3, Pir2-3(t),Pir9-2, Pir9-2(t),Pir12-2, Pir12-2(t),Pirf2-1, Pirf2-1(t)
34087	22976392	Jerwin R Undan, Tamiru M., Abe A., Yoshida K., Kosugi S., Takagi H., Yoshida K., Kanzaki H., Saitoh H., Fekih R., Sharma S., Undan J., Yano M., Terauchi R.	Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.).	Genes Genet. Syst.	87(3)	169-79	2012	LMS,-,-	OsLMS,OsCPL1, CPL1,OsCPL2, CPL2
34088	15101094	Qiu-Min Han, Jiang H., Qi X., YU J., WU P.	A CHASE domain containing protein kinase OsCRL4, represents a new AtCRE1-like gene family in rice.	J. Zhejiang Univ. Sci.	5(6)	629-33	2004	HK4,HK5,CKT1,HK3	OHK4, HK, OsHK4, Crl1b, Ohk4,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b
34089	17408920	Du L., Jiao F., Chu J., Jin G., Chen M., WU P.	The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.	Genomics	89(6)	697-707	2007	RR22,RR23,RR25,RR27,RR28,RR29,PHP1,PHP2,PHP3,RR26,RR21,RR13,RR12,CRL4,RR24,AHP2,CKT1,AHP1,RR8	OsRR22, Rrb4, Orr2, OsRR20, OsRRB4,OsRR23, Rrb5, Orr3, OsRR18, OsRRB5,OsRR25, Rrb3, Orr5, OsRR21, OsRRB3,OsRR27, Rra16, OsPRR5, OsRRA16,OsRR28, Rra22, OsPRR3, OsRRA22,OsRR29, Rrb7, OsPRR4, OsRRB7,OsPHP1, Hpt1, OsHP3, OsHpt1,OsPHP2, Hpt4, OsHP5, OsHpt4,OsPHP3, Hpt5, OsHP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OsRR26, Rrb6, Orr6, OsRR16, OsRRB6,OsRR21, Rrb1, Orr1, OsRR19, OsRRB1, ORR1,OsRR13, Rra12, OsRR12, OsRRA12, RR12,OsRR12, Rra11, OsRR8, RR8, OsRRA11,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13
34090	21357645	Xie X.Z., Xue Y.J., Zhou J.J., Zhang B., Chang H., Takano M.	Phytochromes regulate SA and JA signaling pathways in rice and are required for developmentally controlled resistance to Magnaporthe grisea.	Mol Plant	4(4)	688-96	2011	_,AOS2,_,_,PAL1,CHS,PR1A,PAL1,PR1B,NH1,_	OsEDS1, EDS1,OsAOS2, CYP74A2, OsAOS, OsAOS1,PAD4, OsPAD4,ICS1, OsICS1, OsICS, ICS,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
34091	17263873	Boonburapong B., Buaboocha T.	Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins.	BMC Plant Biol.	7	4	2007	_,CML5,CML3,CML24,_,CML10,CML11,CML12,CML13,CML14,CML15,CML17,CML18,CML19,CML2,CML21,CML22,CML23,CML25,CML26,CML27,CML20,CML29,CML30,CML32,CML4,CML6,CML8,CML9,_,CML7,CALB,CML28,CALA,CML16,CML31,CAM61	OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,OsCML5,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsCML24,OsCaM3, OsCam3,OsCML10,OsCML11,OsCML12,OsCML13,OsCML14,OsCML15,OsCML17,OsCML18,OsCML19,OsCML2,OsCML21,OsCML22,OsCML23,OsCML25,OsCML26,OsCML27,OsCML20,OsCML29,OsCML30,OsCML32,OsCML4,OsCML6,OsCML8,OsCML9,OsCam1-3, OsCaM1-3, CAM1,OsCML7, OsSTKC,CALb*, Cal2, CAM1-2, CAM, CaM-1, OsCam1-2, OsCaM1-2,OsCML28,CALa*, Cal1, CaM-2, CAM2, CAM, OsCaM2, OsCam2, OsCaM1, CaM1,OsCML16,OsCML31, OsMSR2, MSR2,CaM61, OsCaM61, OsCML1, OsCML1d
34092	22807623	Rashid M., Guangyuan H., Guangxiao Y., Hussain J., Xu Y.	AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.	Evol. Bioinform. Online	8	321-355	2012	PLT10,PLT7,ERF137,PLT2,ERF92,FZP,PLT3,ERF140,ERF141,AP2/EREBP47,ERF8,ERF13,ERF16,AP2/EREBP79,AP2/EREBP22,AP2/EREBP139,AP2/EREBP85,AP2/EREBP86,AP2/EREBP92,AP2/EREBP99,AP2/EREBP31,AP2/EREBP101,PLT9,AP2/EREBP68,AP2/EREBP153,AP2/EREBP155,ERF138,ERF74,ERF82,ERF84,ERF87,ERF89,ERF109,ERF110,ERF112,ERF113,ERF119,ERF120,ERF121,ERF122,ERF125,ERF128,ERF129,ERF130,ERF132,ERF69,ERF79,ERF80,ERF81,ERF83,ERF85,ERF86,ERF90,ERF94,ERF97,ERF17,ERF18,ERF19,ERF88,ERF95,AP2/EREBP59,ERF72,AP2/EREBP109,AP2/EREBP131,ERF21,ERF23,ERF32,ERF36,ERF37,ERF39,ERF43,ERF45,ERF47,ERF49,ERF51,ERF52,ERF54,ERF55,ERF56,ERF57,ERF117,ERF41,ERF136,DREB1D,ERF58,ERF93,ERF48,AP2/EREBP77,ERF68,ERF96,ERF22,ERF1,ERF123,AP2/EREBP129,ERF108,ERF71,ERF76,DREB2A,AP2/EREBP52,ERF142,AP2/EREBP127,AP2/EREBP96,EREBP1,ERF127,ERF77,ERF134,ERF66,SNB,ERF67,ERF20,ERF59,ERF65,ERF4,ERF5,ERF6,ERF7,ERF9,ERF11,ERF14,ERF15,ERF98,ERF107,ERF103,ERF100,ERF118,ERF124,ERF38,ERF33,ERF35,ERF28,ERF61,ERF50,ERF53,ERF34,ERF44,ERF64,ERF106,PLT5,SUB1B,ERF105,RSR1,ERF12,ERF99,ERF104,SUB1C,ERF2,DREB1F,DREB1C,ERF3,ERF115,DREB1G,DREB1E,EBP-89,ERF102,ERF131,ERF133,ERF91,ERF62,ERF42,ERF3,ERF101,IDS1,DREB1B,DREB1A,SHAT1,PLT6,PLT4,PLT1,PLT8	OsPLT10, AP2/EREBP26, AP2/EREBP#026 ,OsPLT7, AP2/EREBP#088, AP2/EREBP88,OsERF#137, OsERF137, AP2/EREBP136, AP2/EREBP#136,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2,OsERF#140, OsERF140, AP2/EREBP#013, AP2/EREBP13,OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19,AP2/EREBP#047,OsERF#008, OsERF008, OsERF8, AP2/EREBP#128, AP2/EREBP128,OsERF#013, OsERF013, OsERF13, AP2/EREBP#143, AP2/EREBP143,OsERF#016, OsERF016, OsERF16, AP2/EREBP#055, AP2/EREBP55,AP2/EREBP#079,AP2/EREBP#022,AP2/EREBP#139,AP2/EREBP#085,AP2/EREBP#086,AP2/EREBP#092,AP2/EREBP#099,AP2/EREBP#031,AP2/EREBP#101,OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT,AP2/EREBP#068,AP2/EREBP#153,AP2/EREBP#155,OsERF#138, OsERF138, AP2/EREBP#108, AP2/EREBP108,OsERF#074, OsERF074, OsERF74, AP2/EREBP#051, AP2/EREBP51,OsERF#082, OsERF082, OsERF82, AP2/EREBP#035, AP2/EREBP35,OsERF#084, OsERF084, OsERF84, OsDERF10, DERF10, AP2/EREBP#097, AP2/EREBP97,OsERF#087, OsERF087, OsERF87, AP2/EREBP#067, AP2/EREBP67,OsERF#089, OsERF089, OsERF89, AP2/EREBP#154, AP2/EREBP154,OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63,OsERF#110, OsERF110, AP2/EREBP#008, AP2/EREBP8,OsERF#112, OsERF112, AP2/EREBP#009, AP2/EREBP9,OsERF#113, OsERF113, AP2/EREBP#058, AP2/EREBP58,OsERF#119, OsERF119, AP2/EREBP#104, AP2/EREBP104,OsERF#120, OsERF120, AP2/EREBP#105, AP2/EREBP105,OsERF#121, OsERF121, AP2/EREBP#061, AP2/EREBP61,OsERF#122, OsERF122, AP2/EREBP#056, AP2/EREBP56,OsERF#125, OsERF125, AP2/EREBP#016, AP2/EREBP16,OsERF#128, OsERF128, AP2/EREBP#034, AP2/EREBP34,OsERF#129, OsERF129, AP2/EREBP#045, AP2/EREBP45,OsERF#130, OsERF130, AP2/EREBP#165, AP2/EREBP165,OsERF#132, OsERF132, AP2/EREBP#010, AP2/EREBP10,OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28,OsERF#079, OsERF079, OsERF79, AP2/EREBP#017, AP2/EREBP17,OsERF#080, OsERF080, OsERF80, AP2/EREBP#069, AP2/EREBP69,OsERF#081, OsERF081, OsERF81, AP2/EREBP#014, AP2/EREBP14,OsERF#083, OsERF083, OsERF83, AP2/EREBP#163, AP2/EREBP163,OsERF#085, OsERF085, OsERF85, AP2/EREBP#151, AP2/EREBP151, AP2/EREBP#062, AP2/EREBP62,DERF2, OsDERF2, OsERF#086, OsERF086, OsERF86, AP2/EREBP#074, AP2/EREBP74, OsERF1,OsERF#090, OsERF090, OsERF90, AP2/EREBP#071, AP2/EREBP71,OsERF#094, OsERF094, OsERF94, AP2/EREBP#039, AP2/EREBP39,OsERF#097, OsERF097, OsERF97, AP2/EREBP#038, AP2/EREBP38,OsERF#017, OsERF017, OsERF17, AP2/EREBP#091, AP2/EREBP91,OsERF#018, OsERF018, OsERF18, AP2/EREBP#115, AP2/EREBP115,OsERF#019, OsERF019, OsERF19, AP2/EREBP#157, AP2/EREBP157,OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23,OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2 ,AP2/EREBP#059, AP2-4,OsEREBP, OsERF#072, OsERF072, OsERF72, AP2/EREBP#064, AP2/EREBP64, BIERF1, OsBIERF1, OsEBP2,AP2/EREBP#109,AP2/EREBP#131,OsERF#021, OsERF021, OsERF21, AP2/EREBP#140, AP2/EREBP140,OsERF#023, OsERF023, OsERF23, AP2/EREBP#144, AP2/EREBP144,OsERF#032, OsERF032, OsERF32, AP2/EREBP#021, AP2/EREBP21,OsERF#036, OsERF036, OsERF36, AP2/EREBP#007, AP2/EREBP7,OsERF#037, OsERF037, OsERF37, AP2/EREBP#041, AP2/EREBP41,OsERF#039, OsERF039, OsERF39, AP2/EREBP#002, AP2/EREBP2,OsERF#043, OsERF043, OsERF43, AP2/EREBP#095, AP2/EREBP95,OsERF#045, OsERF045, OsERF45, AP2/EREBP#119, AP2/EREBP119,OsERF#047, OsERF047, OsERF47, AP2/EREBP#121, AP2/EREBP121,OsERF#049, OsERF049, OsERF49, AP2/EREBP#132, AP2/EREBP132,OsERF#051, OsERF051, OsERF51, DERF11, OsDERF11, AP2/EREBP#156, AP2/EREBP156,OsERF#052, OsERF052, OsERF52, AP2/EREBP#053, AP2/EREBP53,OsERF#054, OsERF054, OsERF54, AP2/EREBP#162, AP2/EREBP162,OsERF#055, OsERF055, OsERF55, AP2/EREBP#146, AP2/EREBP146,OsERF#056, OsERF056, OsERF56, AP2/EREBP#164, AP2/EREBP164,OsERF#057, OsERF057, OsERF57, AP2/EREBP#145, AP2/EREBP145,OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsERF#058, OsERF058, OsERF58, AP2/EREBP#032, AP2/EREBP32,OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170,AP2/EREBP#077, OsRAV1, RAV1,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2 ,OsERF#022, OsERF022, OsERF22, AP2/EREBP#087, AP2/EREBP87,Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1,OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66,AP2/EREBP#129, OsRAV2, RAV2,OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,AP2/EREBP#052, ERF52,OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1,AP2/EREBP#127,AP2/EREBP#096,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23,OsAP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149,OsERF#134, OsERF134, AP2/EREBP#011, AP2/EREBP11,OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30,AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB,OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76,OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G,OsERF#059, OsERF059, OsERF59, EBL1, AP2/EREBP#006, AP2/EREBP6,OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107,OsERF#004, OsERF004, OsERF4, AP2/EREBP#159, AP2/EREBP159,OsERF#005, OsERF005, OsERF5, AP2/EREBP#072, AP2/EREBP72,OsERF#006, OsERF006, OsERF6, AP2/EREBP#075, AP2/EREBP75,OsERF#007, OsERF007, OsERF7, AP2/EREBP#142, AP2/EREBP142,OsERF#009, OsERF009, OsERF9, AP2/EREBP#135, AP2/EREBP135,OsERF#011, OsERF011, OsERF11, OsDERF9, DERF9, AP2/EREBP#083, AP2/EREBP83,OsERF#014, OsERF014, OsERF14, AP2/EREBP#103, AP2/EREBP103,OsERF#015, OsERF015, OsERF15, AP2/EREBP#102, AP2/EREBP102,OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120,OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130,OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36,OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,OsERF#038, OsERF038, OsERF38, AP2/EREBP#082, AP2/EREBP82, OsDREB4-1,OsERF#033, OsERF033, OsERF33, AP2/EREBP#040, AP2/EREBP40, OsDREB4-2,OsERF#035, OsERF035, OsERF35, AP2/EREBP#148, AP2/EREBP148, OsAP211,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsERF#061, OsERF061, OsERF61, AP2/EREBP#093, AP2/EREBP93,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6,OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134,OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsERF#064, OsERF064, OsERF64, AP2/EREBP#029, AP2/EREBP29, OsBIERF4, BIERF4,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2 ,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5,OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4,OsPLT1, AP2/EREBP#044, AP2/EREBP44,OsPLT8, CRL5, AP2/EREBP141, AP2/EREBP#141 
34093	22215967	Hu L., Liu S.	Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers.	Genet. Mol. Biol.	34(4)	624-33	2011	ERF140,ERF141,ERF144,ERF145,ERF143,ERF142	OsERF#140, OsERF140, AP2/EREBP#013, AP2/EREBP13,OsERF#141, OsERF141, AP2/EREBP#019, AP2/EREBP19,OsERF#144, OsERF144,OsERF#145, OsERF145,OsERF#143, OsERF143,OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1
34094	18936491	Fukao T., Julia Bailey-Serres	submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.	Proc. Natl. Acad. Sci. U.S.A.	105(43)	16814-9	2008	SUB1B,SUB1C,SUB1A,SLR1,SLRL1	Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1
34095	17303594	Morita Y., KYOZUKA J.	Characterization of OsPID, the rice ortholog of PINOID, and its possible involvement in the control of polar auxin transport.	Plant Cell Physiol.	48(3)	540-9	2007	BIF2,PIDL	bif2, Osbif2, OsBIF2, OsPID, PID,OsPIDL 
34096	12684786	Kato H., Sutoh K., Minamikawa T.	Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2.	Planta	217(4)	676-85	2003	_,_	REP-1, OsSAG12-1, SAG12-1, OsEnS-21,OsVPE3, VPE3, REP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2
34097	22408071	Zhou Y., Lu D., Li C., Luo J., Zhu B.F., Zhu J., Shangguan Y., Wang Z., Sang T., Zhou B., Han B.	Genetic Control of Seed SHATTERING in Rice by the APETALA2 transcription factor SHATTERING ABORTION1.	Plant Cell	24(3)	1034-48	2012	SHAT1	SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5
34098	16262715	Itoh H., Shimada A., Miyako Ueguchi-Tanaka, Kamiya N., Hasegawa Y., Ashikari M., Matsuoka M.	Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.	Plant J.	44(4)	669-79	2005	SLRL2,SLR1,SLRL1	OsSLRL2, OsGRAS-30, OsGRAS30, GRAS-30, GRAS30,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1
34099	19665023	Xie G., Kato H., Sasaki K., Imai R.	A cold-induced thioredoxin h of rice, OsTrx23, negatively regulates kinase activities of OsMPK3 and OsMPK6 in vitro.	FEBS Lett.	583(17)	2734-8	2009	TRXH5,_,TRXH8,TRXH4,TRXH9,TRXH7,TRXH3,TRXH,MPK6,MSRMK2,PITA	OsTRXh5, OsTrx24, Os4, OsTrxh4,OsTrx15,OsTRXh8, OsTrx18, Os5, OsTrxh5,OsTRXh4, OsTrx10, Os3, OsTrxh3,OsTRXh9, OsTrx20,OsTRXh7, OsTrx1,OsTRXh3, OsTrx26, antiSTR1,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsMPK6, OsDR6, OsMPK4,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
34100	17449649	Xue-Cheng Zhang, Wu X., Findley S., Wan J., Libault M., Henry T Nguyen, Steven B Cannon, Stacey G.	Molecular evolution of lysin motif-type receptor-like kinases in plants.	Plant Physiol.	144(2)	623-36	2007	_,_,_,_,_,_	OsLysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2,OsLysM-RLK2, OsLYK5,OsLysM-RLK3, OsLYK1,OsLysM-RLK5, OsLYK2,OsLysM-RLK6, OsLYK3,OsLysM-RLK7, OsLYK6
34103	22576235	Myint K.M., Arikit S., Wanchana S., Yoshihashi T., Choowongkomon K., Vanavichit A.	A PCR-based marker for a locus conferring the aroma in Myanmar rice (Oryza sativa L.).	Theor. Appl. Genet.			2012	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
34104	22570445	Kobayashi K., Yasuno N., Sato Y., Yoda M., Yamazaki R., Kimizu M., Yoshida H., Nagamura Y., Kyozuka J.	inflorescence meristem Identity in Rice Is Specified by Overlapping Functions of Three AP1/FUL-Like MADS Box Genes and PAP2, a SEPALLATA MADS Box Gene.	Plant Cell	24(5)	1848-59	2012	MADS18,RAP1B,PAP2,HD3A,RAP1A	OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
34105	22641204	Olsen K.M.	One gene's shattering effects.	Nat. Genet.	44(6)	616-7	2012	SH1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1
34106	22558386	Ye M., Luo S.M., Xie J.F., Li Y.F., Xu T., Liu Y., Song Y.Y., Zhu-Salzman K., Zeng R.S.	silencing COI1 in rice increases susceptibility to chewing insects and impairs inducible defense.	PLoS ONE	7(4)	e36214	2012	_	OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728
34107	22685166	Tong H., Liu L., Jin Y., Du L., Yin Y., Qian Q., Zhu L., Chu C.	DWARF AND LOW-TILLERING Acts as a Direct Downstream Target of a GSK3/SHAGGY-like kinase to Mediate Brassinosteroid Responses in Rice.	Plant Cell	24(6)	2562-77	2012	DLT,_,_,D11,_,D2,BZR1,BRD1,D61	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, SKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsBZR1, Os BZR1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
34109	22644768	Zhao C., Xu J., Chen Y., Mao C., Zhang S., Bai Y., Jiang D., Wu P.	Molecular cloning and characterization of OsCHR4, a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll.	Planta	236(4)	1165-76	2012	_	OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL6
34110	22525239	Li Y., Feng D., Zhang D., Su J., Zhang Y., Li Z., Mu P., Liu B., Wang H., Wang J.	Rice MAPK phosphatase IBR5 negatively regulates drought stress tolerance in transgenic Nicotiana tabacum.	Plant Sci.	188-189	10-8	2012	_	OsIBR5, IBR5, OsPP85
34112	22649273	Sun S., Gu M., Cao Y., Huang X., Zhang X., Ai P., Zhao J., Fan X., Xu G.	A Constitutive Expressed Phosphate Transporter, OsPht1;1, Modulates Phosphate Uptake and Translocation in Phosphate-Replete Rice.	Plant Physiol.	159(4)	1571-81	2012	PHR2,LTN1,PT1	OsPHR2, Os-PHR2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPT1, PHT1-1, OsPht1;1, Pht1;1
34113	22653607	Yan J.J., Zhang Y.B., Ding Y.	Binding mechanism between Hsp90 and Sgt1 explored by homology modeling and molecular dynamics simulations in rice.	J Mol Model	18(10)	4665-73	2012	HSP90,_	OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,OsSgt1, SGT1, OsSGT1, Os SGT1
34114	22551250	Akkinepalli H., Ereful N., Liu Y., Malabanan K., Howells R., Stamati K., Powell W., Leung H., Greenland A., Mackay I., Lee D.	Snapshots of gene expression in rice: limitations for allelic expression imbalance determination.	Genome	55(5)	400-6	2012		
34115	22551450	Redillas M.C., Jeong J.S., Kim Y.S., Jung H., Bang S.W., Choi Y.D., Ha S.H., Reuzeau C., Kim J.K.	The overexpression of OsNAC9 alters the root architecture of rice plants enhancing drought resistance and grain yield under field conditions.	Plant Biotechnol. J.	10(7)	792-805	2012	_	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1
34117	22644442	Kumar R., Mustafiz A., Sahoo K.K., Sharma V., Samanta S., Sopory S.K., Pareek A., Singla-Pareek SL.	Functional screening of cDNA library from a salt tolerant rice genotype Pokkali identifies mannose-1-phosphate guanyl transferase gene (OsMPG1) as a key member of salinity stress response.	Plant Mol. Biol.	79(6)	555-68	2012	_,_,_,_	OsMPG2,OsMPG4, MPG4, OsVTC1-8, VTC1-8,OsMPG1, MPG1, OsVTC1-1, VTC1-1,OsMPG3, MPG3, OsVTC1-3, VTC1-3
34119	22623516	Waters M.T., Brewer P.B., Bussell J.D., Smith S.M., Beveridge C.A.	The Arabidopsis Ortholog of Rice DWARF27 Acts Upstream of MAX1 in the Control of Plant Development by Strigolactones.	Plant Physiol.	159(3)	1073-85	2012		
34120	22583826	Bao Y.M., Sun S.J., Li M., Li L., Cao W.L., Luo J., Tang H.J., Huang J., Wang Z.F., Wang J.F., Zhang H.S.	Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to oxidative stress and resistance to rice blast in rice (Oryza sativa L.).	Gene	504(2)	238-44	2012	_,_,_,_,_,_,_,_,_,_,_,_	OsSYP71,OsSYP72,OsBET11,OsBET12,OsSYP51,OsSYP52,OsSYP61,OsSYP62,OsUSE11,OsUSE12,OsSFT11,OsSFT12
34121	22655071	Wang H., Wu Z., Han J., Zheng W., Yang C.	Comparison of ion balance and nitrogen metabolism in old and young leaves of alkali-stressed rice plants.	PLoS ONE	7(5)	e37817	2012	NHX3,CIPK24,HKT4,AMT2;2,AMT2;3,CBL4,AMT2;1,AMT3;1,HAK4,AMT3;2,HAK7,AMT3;3,HAK16,PTR6,SOS1,_,ASN,AMT1;3,GS2,PSR1,GDH2,_,LCS,HAK10,GDH3,GLT2,NHX1,AMT1;2,GDH1,_,HKT1,HKT6,NRT2.3,NRT1,GLT1,GLN1;1,HKT8,GLN1;2,ABC1,AMT1;1	OsNHX3, OsNHX2, NHX2,OsCIPK24, SOS2, OsSOS2,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT2;3, AMT2;3, OsAMT2.3,OsCBL4, SOS3, OsSOS3,OsAMT2;1, AMT2-1, OsAMT2.1,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsHAK4,AMT3;2, OsAMT3;2, OsAMT3.2,OsHAK7,OsAMT3;3, AMT3;3, OsAMT3.3,OsHAK16,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsSOS1, OsNHA1,OsNR1, NR1, nia1, OsNIA1, NIA1,OsASN2, OsAS, OsAS2, AS2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsGS2, GLN2, RGS31,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR,OsGDH2,OsAKT1, Os-AKT1, AKT1,OsHAK1, HAK1,OsHAK10,OsGDH3,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsNHX1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsGDH1,OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsHKT6, OsHKT1;3, HKT1;3,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 ,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
34122	22642989	Choi J., Lee J., Kim K., Cho M., Ryu H., An G., Hwang I.	Functional Identification of OsHk6 as a Homotypic cytokinin receptor in Rice with Preferential Affinity for iP.	Plant Cell Physiol.	53(7)	1334-43	2012	HK4,HK5,CKT1,HK3	OHK4, HK, OsHK4, Crl1b, Ohk4,OHK3, HK, OsHK5, Crl3, Ohk3, OsHK2,OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 ,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b
34123	22519706	Tong X., Qi J., Zhu X., Mao B., Zeng L., Wang B., Li Q., Zhou G., Xu X., Lou Y., He Z.	The rice hydroperoxide lyase OsHPL3 functions in defense responses by modulating the oxylipin pathway.	Plant J.	71(5)	763-75	2012		
34124	22531935	Gaur V.S., Singh U.S., Gupta A.K., Kumar A.	Influence of different nitrogen inputs on the members of ammonium transporter and glutamine synthetase genes in two rice genotypes having differential responsiveness to nitrogen.	Mol. Biol. Rep.	39(8)	8035-44	2012	AMT2;2,AMT2;3,AMT3;2,AMT2;1,AMT3;1,AMT1;1,GLN1;2,GLN1;1,AMT1;3,AMT1;2	OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT2;3, AMT2;3, OsAMT2.3,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT2;1, AMT2-1, OsAMT2.1,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
34125	22581231	Lin Z., Li X., Shannon L.M., Yeh C.T., Wang M.L., Bai G., Peng Z., Li J., Trick H.N., Clemente T.E., Doebley J., Schnable P.S., Tuinstra M.R., Tesso T.T., White F., Yu J.	Parallel domestication of the Shattering1 genes in cereals.	Nat. Genet.	44(6)	720-4	2012	SH1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1
34126	22794914	Chen H., Chen W., Zhou J., He H., Chen L., Chen H., Deng X.W.	Basic leucine zipper transcription factor OsbZIP16 positively regulates drought resistance in rice.	Plant Sci.	193-194	8-17	2012	BZIP16	OsbZIP16, OsSTA51
34127	22572927	Zhang C., Zhang F., Zhou J., Fan Z., Chen F., Ma H., Xie X.	Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings.	Plant Cell Rep.	31(7)	1333-43	2012	C3H35	OsC3H35, OsTZF1, OsCCCH-Zn-3
34128	22582989	Abu-Zaitoon YM., Bennett K., Normanly J., Nonhebel H.M.	A large increase in IAA during development of rice grains correlates with the expression of tryptophan aminotransferase OsTAR1 and a grain-specific YUCCA.	Physiol Plant	146(4)	487-99	2012	YUCCA9,YUCCA11,TYDC,YUCCA12,TAR1,TAR2,YUCCA14,TDC2,TDC1,YUCCA3,FIB	OsYUCCA9, OsYUC9, YUC9,OsYUCCA11, OsYUC11,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3,OsYUCCA12, OsYUC12,OsTAR1, FBL,OsTAR2,OsYUCCA14, OsYUC14,OsTDC2,OsTDC, TDC2, OsTDC1,OsYUCCA3, OsYUC3,fib, OsTAR2, TAR2
34129	22643902	Yang Z., Bai Z., Li X., Wang P., Wu Q., Yang L., Li L., Li X.	SNP identification and allelic-specific PCR markers development for TaGW2, a gene linked to wheat kernel weight.	Theor. Appl. Genet.	125(5)	1057-68	2012	GW2	OsGW2
34130	22529386	Yang D.L., Yao J., Mei C.S., Tong X.H., Zeng L.J., Li Q., Xiao L.T., Sun T.P., Li J., Deng X.W., Lee C.M., Thomashow M.F., Yang Y., He Z., He S.Y.	Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade.	Proc. Natl. Acad. Sci. U.S.A.	109(19)	E1192-200	2012	EUI1,_,_,SLR1	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
34131	22608525	Kitomi Y., Inahashi H., Takehisa H., Sato Y., Inukai Y.	OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice.	Plant Sci.	190	116-22	2012	IAA13	OsIAA13, OsIAA1, OsiIAA1
34132	22592958	Shen W.J., Ruan X.L., Li X.S., Zhao Q., Li H.P.	RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.	Arch. Virol.	157(8)	1531-9	2012	MIR167C,ARF8,MIR167F,MIR167E,MIR167I,MIR167G,MIR167J,MIR162B,MIR167A,MIR167B,MIR168A,MIR167H,MIR167D	miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,OsARF8, OsARF12, ARF12,miR167f, osa-miR167f, osa-miRNA167f ,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR167g, osa-miR167g, osa-miRNA167g ,miR167j, osa-miR167j, osa-MIR167j,miR162b, osa-miR162b, osa-MIR162b ,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p,miR167b, osa-miR167b,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p
34133	22569963	Luo D., Niu X., Yu J., Yan J., Gou X., Lu B.R., Liu Y.	Rice choline monooxygenase (OsCMO) protein functions in enhancing glycine betaine biosynthesis in transgenic tobacco but does not accumulate in rice (Oryza sativa L. ssp. japonica).	Plant Cell Rep.	31(9)	1625-35	2012	_	OsCMO
34135	22731699	Zhang Y., Xu Y.H., Yi H.Y., Gong J.M.	Vacuolar membrane transporters OsVIT1 and OsVIT2 modulate iron translocation between flag leaves and seeds in rice.	Plant J.	72(3)	400-10.	2012	_,_	OsVIT1;2, OsVIT1,OsVIT2, OsVIT1
34136	22694163	Li R., Afsheen S., Xin Z., Han X., Lou Y.	OsNPR1 negatively regulates herbivore-induced JA and ethylene signaling and plant resistance to a chewing herbivore in rice.	Physiol Plant	147(3)	340-51	2012	NH1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
34138	22745421	von Caemmerer S., Quick W.P., Furbank R.T.	The development of C? rice: current progress and future challenges.	Science	336(6089)	1671-2	2012		
34139	22717673	Park Y.H., Choi C., Park E.M., Kim H.S., Park H.J., Bae S.C., Ahn I., Kim M.G., Park S.R., Hwang D.J.	Over-expression of Rice leucine-rich repeat protein results in activation of defense response, thereby enhancing resistance to bacterial soft rot in Chinese cabbage.	Plant Cell Rep.	31(10)	1845-50	2012	_	OsLRP, OsLRR1, LRR1
34141	22665444	Wu B., Zhang B., Dai Y., Zhang L., Shang-Guan K., Peng Y., Zhou Y., Zhu Z.	Brittle culm15 encodes a membrane-associated chitinase-like protein required for cellulose biosynthesis in rice.	Plant Physiol.	159(4)	1440-52	2012	BC15,BC3,BC14,CESA6,BC1,CESA1,BC12,BC10,CESA2,CESA5,BC7,CESA3,BC6,CESA8,CESA7	OsCTL1,bc3, bc-3, OsDRP2B, DRP2B,BC14, OsNST1,OsCesA6, OsCESA6, OS_CESA06,bc1, bc-1, OsBC1, CWA1, FP1,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12,BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116,OsCesA2, OsCESA2, OS_CESA02,OsCesA5, OsCESA5, OS_CESA05,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA3, OsCESA3, OS_CESA03,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
34142	22751314	Yen Hsu Y., Chao Y.Y., Huei Kao C.	Biliverdin-promoted lateral root formation is mediated through heme oxygenase in rice.	Plant Signal Behav	7(7)	885-7	2012	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
34143	22723425	Dagdas Y.F., Yoshino K., Dagdas G., Ryder L.S., Bielska E., Steinberg G., Talbot N.J.	Septin-mediated plant cell invasion by the rice blast fungus, Magnaporthe oryzae.	Science	336(6088)	1590-5	2012		
34145	22686276	Ribeiro C.W., Carvalho F.E., Rosa S.B., Alves-Ferreira M., Andrade C.M., Ribeiro-Alves M., Silveira J.A., Margis R., Margis-Pinheiro M.	Modulation of genes related to specific metabolic pathways in response to cytosolic ascorbate peroxidase knockdown in rice plants.	Plant Biol (Stuttg)	14(6)	944-55	2012	APX1,APX2	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
34146	22735448	Park C.J., Ronald P.C.	Cleavage and nuclear localization of the rice XA21 immune receptor.	Nat Commun	3	920	2012	XA21,WRKY62	Xa21*, Xa21, OsXA21,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10
34147	22729225	Wang S., Wu K., Yuan Q., Liu X., Liu Z., Lin X., Zeng R., Zhu H., Dong G., Qian Q., Zhang G., Fu X.	Control of grain size, shape and quality by OsSPL16 in rice.	Nat. Genet.	44(8)	950-4	2012	LK3,GW8	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,SPL16, OsSPL16, SLP1, qGW8
34148	22705026	Jung C.G., Lim S.D., Hwang S.G., Jang C.S.	Molecular characterization and concerted evolution of two genes encoding RING-C2 type proteins in rice.	Gene	505(1)	9-18	2012	_,_	OsRINGC2-2,OsRINGC2-1, RINGC2-1
34149	22688271	Xu J., Li M., Chen L., Wu G., Li H.	Rapid generation of rice mutants via the dominant negative suppression of the mismatch repair protein OsPMS1.	Theor. Appl. Genet.	125(5)	975-86	2012	_,_	OsPMS1, OsPMS2,OsMLH1
34150	22688121	Mahanty S., Kaul T., Pandey P., Reddy R.A., Mallikarjuna G., Reddy C.S., Sopory S.K., Reddy M.K.	Biochemical and molecular analyses of copper-zinc superoxide dismutase from a C(4) plant Pennisetum glaucum reveals an adaptive role in response to oxidative stress.	Gene	505(2)	309-17	2012	SOD2,SOD4,SODCC2,SODCC1	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1
34151	22849582	Shen Y., Zhang W., Liu X., Chen L., Liu S., Zheng L., Li J., Chen Y., Wu T., Yu Y., Zhong Z., Jiang L., Wan J.	Identification of two stably expressed QTLs for fat content in rice (Oryza sativa).	Genome	55(8)	585-90	2012		
34152	22803610	Wang C., Huang W., Ying Y., Li S., Secco D., Tyerman S., Whelan J., Shou H.	Functional characterization of the rice SPX-MFS family reveals a key role of OsSPX-mfs1 in controlling phosphate homeostasis in leaves.	New Phytol.	196(1)	139-48	2012	miR827,_,_,_,_,PHR2	miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsSPX-MFS2, SPX-MFS2 ,OsSPX-MFS1, SPX-MFS1,OsSPX-MFS4,OsSPX-MFS3,OsPHR2, Os-PHR2
34153	22856514	Kesawat M.S., Das B.K., Bhaganagare G.R., Manorama	Genome-wide identification, evolutionary and expression analyses of putative Fe-S biogenesis genes in rice (Oryza sativa).	Genome	55(8)	571-83	2012	MDR10,ISC11,ISC13,ISC12,HSP58.7,ISC9,ISC5,ABCI3_1,ABCI4,ABCA2,ABCI5,MDR5,MDR9,MDR8,ABCB9,ISC1,ISC26,ISC3,ISC2,ISC4,ISC44,ISC37,ISC35,ISC40,ISC39,ISC6,ISC14,ISC15,ISC19,ISC20,ISC21,ISC22,ISC24,ISC38,ISC41,ISC7,ISC36,ISC8,ISC42,ISC43,ISC10,ISC23,ABCB23,MDR7	OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsISC11,OsISC13,OsISC12,OsHsp58.7, OsHSP58.7, OsISC25,OsISC9,OsISC5,OsABCI3_1, OsABCI3_2, OsISC17,OsABCI4, OsISC18,OsABCA2, OsISC27,OsABCI5, OsISC16,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB9, OsPGP9, OsISC33,OsISC1,OsDjC80, OsISC26,OsISC3,OsISC2,OsISC4,OsISC44,OsISC37,OsISC35,OsISC40,OsISC39,OsISC6,OsISC14,OsISC15,OsISC19,OsISC20,OsISC21,OsISC22,OsISC24,OsISC38,OsISC41,OsISC7,OsISC36,OsISC8,OsISC42,OsISC43,OsISC10,OsISC23,OsABCB23, OsISC32, OsATM3, ATM3,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11
34155	22773748	Hong Y.F., Ho T.H., Wu C.F., Ho S.L., Yeh R.H., Lu C.A., Chen P.W., Yu L.C., Chao A., Yu S.M.	Convergent Starvation Signals and Hormone Crosstalk in Regulating Nutrient Mobilization upon Germination in Cereals.	Plant Cell	24(7)	2857-73	2012	_,GAMYB	OsMYBS1, MYBS1, Os-MYBS1, Mybs1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB
34156	22785493	Pitakrattananukool S., Kawakatsu T., Anuntalabhochai S., Takaiwa F.	Overexpression of <i>OsRab7B3</i>, a Small GTP-Binding Protein Gene, Enhances leaf senescence in Transgenic Rice.	Biosci. Biotechnol. Biochem.	76(7)	1296-302	2012	_,_,_,_,RGP1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RGP2,_,_,_,_,_,_,_,_,_,GLUP4,_,_,_	OsRab11G2,OsRab18A1,OsRab18B1,OsRab11E1,rgp1, OsRab11E2,OsRab11F2,OsRab11G1,OsRab7A1,OsRab7A2,OsRab1A2,OsRab1B1,OsRab2A2,OsRab5C1,OsRab5D1,OsRab7B2,OsRab8A1,OsRab8A2,OsRab8A5, OsRab8a,OsRab8B1,OsRab11A1,OsRab11A2,OsRab11B2,OsRab11C1,OsRab11C2,OsRab11D2,OsRab11D3,OsRab1C1,OsRab1C3, OsRab1,OsRab2A1, OsRab2,OsRab8A3,OsRab11C3,rgp2, OsRab11B1,OsRab18B2, Q10RT8,OsRab2B1,OsRab7B1, Rab7B1, OsRab7,OsRab11F1, OsPRA2, PRA2, OsPra2 ,OsRab6A1, Rab6A1,OsRab6B2, Rab6B2, OsRab6a, Rab6a,OsRab1B2, OsRas1,OsRab5B1, Rab5c, OsRab5c ,OsRab5A2, Rab5A2,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,OsRab5A1, OsRab5b, Rab5b,OsRab7B3, Rab7B3, OsRab7, Rab7,OsRab11D1, OsRab11, Rab11, ric2
34157	22859682	Song S., Dai X., Zhang W.H.	A rice F-box gene, OsFbx352, is involved in glucose-delayed seed germination in rice.	J. Exp. Bot.	63(15)	5559-68	2012	NCED2,NCED1,_,ABA8OX3,ABA8OX2	OsNCED2, OsNced2, OsCCD4b, CCD4b,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsFbx352, OsFbox516, Os_F0046,OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2
34158	22805094	Tian J., Wang C., Zhang Q., He X., Whelan J., Shou H.	Overexpression of OsPAP10a, A Root-Associated acid phosphatase, Increased Extracellular Organic Phosphorus Utilization in Rice.	J Integr Plant Biol	54(9)	631-9	2012	PAP10B,PAP10D,PAP10C,PAP26,PAP10A,PHR2	OsPAP10b,OsPAP10d,OsPAP10c,OsPAP26,OsPAP10a, PAP10,OsPHR2, Os-PHR2
34159	22790320	Paul P., Awasthi A., Kumar S., Verma S.K., Prasad R., Dhaliwal H.S.	Development of multiple embryos in polyembryonic insertional mutant OsPE of rice.	Plant Cell Rep.	31(10)	1779-87	2012	_	OsPE
34160	22786887	Singh R., Lee M.O., Lee J.E., Choi J.H., Park J.H., Yoo R.H., Cho J.I., Jeon J.S., Rakwal R., Agrawal G.K., Moon J.S., Jwa N.S.	Rice MAPK interactome analysis using yeast two-hybrid system.	Plant Physiol.	160(1)	477-87	2012		
34161	22780875	Kumar G., Kushwaha H.R., Panjabi-Sabharwal V., Kumari S., Joshi R., Karan R., Mittal S., Singla-Pareek SL., Pareek A.	Clustered metallothionein genes are co-regulated in rice and ectopic expression of OsMT1e-P confers multiple abiotic stress tolerance in tobacco via ROS scavenging.	BMC Plant Biol.	12(1)	107	2012	MT2D,MT1F,MTI2B,MT2B,MTI4B,MTI3A,MTI4C,MTII1A,MTI1B,MTI1A,MT1G,MT2A,MTI4A	OsMT2d,OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc ,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsMT4, OsMT-II-1a, MT4, MT-II-1a,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsMT1g, MT1g, MT1Le, OsMT1Le ,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b
34162	22534193	Jiamsomboon K., Treesuwan W., Boonyalai N.	Dissecting substrate specificity of two rice BADH isoforms: Enzyme kinetics, docking and molecular dynamics simulation studies.	Biochimie	94(8)	1773-83	2012	BAD1,SK2(T)(SCL, FGR)	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
34163	22807445	Reinders A., Sun Y., Karvonen K.L., Ward J.M.	Identification of amino acids important for substrate specificity in sucrose transporters using gene shuffling.	J. Biol. Chem.	287(36)	30296-304	2012	SUT1	OsSUT1, OsSUT2
34164	22793791	Chepyshko H., Lai C.P., Huang L.M., Liu J.H., Shaw J.F.	Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis.	BMC Genomics	13	309	2012	GELP104,GELP35,GELP42,GELP52,GELP64,GELP75,GELP82,GELP89,GELP96,GELP112,GELP70,GELP71,GELP72,GELP73,GELP74,GELP77,GELP76,GELP79,GELP80,GELP81,GELP83,GELP28,GELP45,GELP1,GELP2,GELP3,GELP4,GELP5,GELP6,GELP78,GELP103,GELP7,GELP8,GELP9,GELP10,GELP11,GELP14,GELP15,GELP16,GELP13,GELP17,GELP18,GELP19,GELP20,GELP21,GELP22,GELP23,GELP24,GELP25,GELP26,GELP27,GELP29,GELP30,GELP31,GELP32,GELP33,GELP34,GELP36,GELP37,GELP40,GELP38,GELP39,GELP41,GELP43,GELP44,GELP46,GELP47,GELP49,GELP51,GELP53,GELP54,GELP55,GELP56,GELP57,GELP58,GELP60,GELP63,GELP65,GELP61,GELP62,GELP66,GELP67,GELP68,GELP69,GELP84,GELP85,GELP86,GELP87,GELP88,GELP90,GELP91,GELP93,GELP94,GELP95,GELP97,GELP98,GELP99,GELP100,GELP101,GELP102,GELP105,GELP106,GELP108,GELP109,GELP107,GELP110,GELP111,GELP113,GELP114,GELP59,GELP12,GELP92,GELP48,GELP50	OsGELP104,OsGELP35,OsGELP42,OsGELP52,OsGELP64, OsGELP64a, OsGELP64b,OsGELP75, OsGELP75a, OsGELP75b, OsGELP75c,OsGELP82,OsGELP89,OsGELP96, OsGELP96a, OsGELP96b,OsGELP112, WDL1,OsGELP70,OsGELP71,OsGELP72,OsGELP73,OsGELP74,OsGELP77, OsGELP77a, OsGELP77b,OsGELP76,OsGELP79,OsGELP80,OsGELP81,OsGELP83, OsGELP83a, OsGELP83b,OsGELP28,OsGELP45, OsGELP45a, OsGELP45b,OsGELP1, OsEST1,OsGELP2, OsGELP2a, OsGELP2b,OsGELP3, OsGELP3a, OsGELP3b,OsGELP4,OsGELP5, OsGELP5a, OsGELP5b,OsGELP6,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,OsGELP103,OsGELP7,OsGELP8,OsGELP9,OsGELP10,OsGELP11,OsGELP14,OsGELP15, OsGELP15a, OsGELP15b, OsGELP15c,OsGELP16, OsGELP16a, OsGELP16b,OsGELP13,OsGELP17,OsGELP18, OsGELP18a, OsGELP18b,OsGELP19,OsGELP20, OsGELP20a, OsGELP20b, OsGELP20c,OsGELP21, OsGELP21a, OsGELP21b, OsGELP21c,OsGELP22,OsGELP23,OsGELP24,OsGELP25,OsGELP26,OsGELP27,OsGELP29,OsGELP30,OsGELP31,OsGELP32,OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c,OsGELP34,OsGELP36,OsGELP37,OsGELP40,OsGELP38,OsGELP39,OsGELP41,OsGELP43,OsGELP44, OsGELP44a, OsGELP44b,OsGELP46, OsGELP46a, OsGELP46b,OsGELP47,OsGELP49,OsGELP51,OsGELP53,OsGELP54,OsGELP55, OsGELP55a, OsGELP55b,OsGELP56,OsGELP57,OsGELP58, OsGELP58a, OsGELP58b, OsGELP58c, OsGELP58d,OsGELP60,OsGELP63,OsGELP65,OsGELP61,OsGELP62, OsGELP62a, OsGELP62b, OsGELP62c,OsGELP66,OsGELP67, OsGELP67a, OsGELP67b,OsGELP68,OsGELP69,OsGELP84,OsGELP85,OsGELP86,OsGELP87,OsGELP88,OsGELP90,OsGELP91,OsGELP93,OsGELP94, OsGELP94a, OsGELP94b,OsGELP95,OsGELP97, OsGELP97a, OsGELP97b,OsGELP98, OsGELP98a, OsGELP98b,OsGELP99,OsGELP100, OsGELP100a, OsGELP100b,OsGELP101,OsGELP102,OsGELP105,OsGELP106,OsGELP108,OsGELP109,OsGELP107,OsGELP110,OsGELP111,OsGELP113,OsGELP114, OsGELP114a, OsGELP114b,OsGELP59, RMP7,OsGELP12, OsGELP12a, OsGELP12b, OsGELP12c,OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE,OsGELP48,OsGELP50, OsGELP50a, OsGELP50b
34165	22846038	Bian H., Xie Y., Guo F., Han N., Ma S., Zeng Z., Wang J., Yang Y., Zhu M.	Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa).	New Phytol.	196(1)	149-61.	2012	MIR393B,IAA1,_,_,MIR393	OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,OsIAA1, OsIAA4,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,OsTIR1, TIR1, OsFbox248, Os_F0717,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a 
34166	22778444	Chodavarapu R.K., Feng S., Ding B., Simon S.A., Lopez D., Jia Y., Wang G.L., Meyers B.C., Jacobsen S.E., Pellegrini M.	Transcriptome and methylome interactions in rice hybrids.	Proc. Natl. Acad. Sci. U.S.A.	109(30)	12040-5	2012		
34167	22755510	Wang L., Ying Y., Narsai R., Ye L., Zheng L., Tian J., Whelan J., Shou H.	Identification of OsbHLH133 as a regulator of iron distribution between roots and shoots in Oryza sativa.	Plant Cell Environ.	36(1)	224-36.	2012	_,_,NAS3,_,_,_,_,ENA1,_,_,_,_,IRT2,_,_,YSL2,TOM1,NAAT1,NRAMP1,_,YSL15,DMAS1,NAS1,IRT1,STAR1,NAS2	OsVIT1;2, OsVIT1,OsRPI, RPI,OsNAS3,OsMIR, MIR ,OsDEP, DEP,OsIDI4, IDI4,OsAPT1, APRT, APT1,OsENA1,OsMTN, MTN,OsFRDL1, FRDL1,OsMTK, OsMTK1, MTK, MTK1,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsIRT2, OsIRT1,OsbHLH133, bHLH133, OsRSL8, RSL8,OsSAM2, OsSAMS2, OS-SAMS2,OsYSL2, Os-YSL2, OsYs6 ,OsTOM1, ZIFL4, OsZIFL4 ,OsNAAT1,OsNramp1, OsNRAMP1, OsNramp6,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL15, OsYs7,OsDMAS1,OsNAS1,OsIRT1,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsNAS2
34169	21059694	Yong-Sheng Yan, Xiao-Ying Chen, Yang K., Zong-Xiu Sun, Ya-Ping Fu, Yu-Man Zhang, Rong-Xiang Fang	Overexpression of an F-box protein gene reduces abiotic stress tolerance and promotes root growth in rice.	Mol Plant	4(1)	190-7	2011	_	MAIF1, OsFbox104, Os_F0528
34170	21825104	Fukuda M., Satoh-Cruz M., Wen L., Crofts A.J., Sugino A., Washida H., Okita T.W., Ogawa M., Kawagoe Y., Maeshima M., Kumamaru T.	The small GTPase Rab5a is essential for intracellular transport of proglutelin from the Golgi apparatus to the protein storage vacuole and endosomal membrane organization in developing rice endosperm.	Plant Physiol.	157(2)	632-44	2011	GLUP4,_,ESP2,_	glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,VSR3, OsVSR3,esp2(rsp2), rsp2, esp2, PDIL1-1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
34171	14657402	Matsumoto N., Hirano T., Iwasaki T., Yamamoto N.	Functional analysis and intracellular localization of rice cryptochromes.	Plant Physiol.	133(4)	1494-503	2003	_,_	OsCRY1b, OsCRY2, CRY1b, CRY1 ,OsCRY1a, OsCRY1, CRY1a, CRY2 
34172	0	Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S., Nishizawa N.K	A Rice FRD3-Like (OsFRDL1) Gene Is Expressed in the Cells Involved in Long-Distance Transport	Soil Sci. Plant Nutr.	50(7)	1133-1140	2004	_,_,_	OsFRDL2,OsFRDL3,OsFRDL1, FRDL1
34173	19825552	Peng Y., Laura E Bartley, Chen X., Dardick C., Chern M., Ruan R., Patrick E Canlas, Pamela C Ronald	OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice.	Mol Plant	1(3)	446-58	2008	XA21,WRKY62	Xa21*, Xa21, OsXA21,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10
34174	20385831	Chen X., Chern M., Patrick E Canlas, Ruan D., Jiang C., Pamela C Ronald	An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity.	Proc. Natl. Acad. Sci. U.S.A.	107(17)	8029-34	2010	XA21,XB24	Xa21*, Xa21, OsXA21,XB24
34175	20590657	Chang-Jin Park, Sang-Wook Han, Chen X., Pamela C Ronald	Elucidation of Xa21-mediated innate immunity.	Cell. Microbiol.	12(8)	1017-25	2010	XA21,XB24,XB3,XB15,WRKY62	Xa21*, Xa21, OsXA21,XB24,Xb3,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10
34176	20174657	Chang-Jin Park, Bart R., Chern M., Patrick E Canlas, Bai W., Pamela C Ronald	Overexpression of the endoplasmic reticulum chaperone BiP3 regulates XA21-mediated innate immunity in rice.	PLoS ONE	5(2)	e9262	2010	_,D61,XA21	OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,Xa21*, Xa21, OsXA21
34177	20149131	Liu F., Wang Z., Ren H., Shen C., Li Y., Hong-Qing Ling, Wu C., Lian X., WU P.	OsSPX1 suppresses the function of OsPHR2 in the regulation of expression of OsPT2 and phosphate homeostasis in shoots of rice.	Plant J.	62(3)	508-17	2010	LTN1,PT2,PHR2,_	LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPHR2, Os-PHR2,OsSPX1, SPX1
34178	22897567	Duan Y., Li S., Chen Z., Zheng L., Diao Z., Zhou Y., Lan T., Guan H., Pan R., Xue Y., Wu W.	Dwarf and Deformed Flower 1, encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.).	Plant J.	72(5)	829-42	2012	_	DDF1
34179	22874758	Yu Q., Beyer P.	Reaction specificities of the epsilon-ionone-forming lycopene cyclase from rice (Oryza sativa) elucidated in vitro.	FEBS Lett.	586(19)	3415-20	2012	_,_	OsLCYe, OsLCYepsilon,OsLCYb, OsLCYbeta, OsLYCb, OsLCY
34180	22872757	Liu B., Li J.F., Ao Y., Qu J., Li Z., Su J., Zhang Y., Liu J., Feng D., Qi K., He Y., Wang J., Wang H.B.	Lysin Motif-Containing Proteins LYP4 and LYP6 Play Dual Roles in Peptidoglycan and Chitin Perception in Rice Innate Immunity.	Plant Cell	24(8)	3406-19	2012	_,_,_,_,_,_,CEBiP	LYP2, Os-LYP2,LYP3, Os-LYP3,LYP5, Os-LYP5,LYP4, Os-LYP4, OsLYP4,LYP6, Os-LYP6, OsLYP6,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,CEBIP, Os-LYP1, LYP1, OsCEBiP
34181	22882529	Zhang Q., Li J., Zhang W., Yan S., Wang R., Zhao J., Li Y., Qi Z., Sun Z., Zhu Z.	The putative auxin efflux carrier OsPIN3t is involved in the drought stress response and drought tolerance.	Plant J.	72(5)	805-16	2012	PIN10A,PIN1B,LRA1	PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1
34182	22913536	Shen C., Wang S., Zhang S., Xu Y., Qian Q., Qi Y., Jiang D.A.	osarf16, a transcription factor, is required for auxin and phosphate starvation response in rice (Oryza sativa L.).	Plant Cell Environ.	36(3)	607-20	2013	ARF16,PHR2	OsARF16,OsPHR2, Os-PHR2
34183	22878205	Momma M., Fujimoto Z.	Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis.	Biosci. Biotechnol. Biochem.	76(8)	1591-5	2012	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
34184	22904148	Steffens B., Kovalev A., Gorb S.N., Sauter M.	Emerging Roots Alter Epidermal Cell Fate through Mechanical and Reactive Oxygen Species Signaling.	Plant Cell	24(8)	3296-306	2012	CRL1,MT2B	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
34185	22888153	Zhao S.Q., Xiang J.J., Xue H.W.	Studies on the Rice Leaf INCLINATION1 (LC1), an IAA-amido Synthetase, Reveal the Effects of Auxin in Leaf Inclination Control.	Mol Plant	6(1)	174-87	2013	LC1	OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1
34186	22889013	Zhang H., Zhai J., Mo J., Li D., Song F.	Overexpression of Rice Sphingosine-1-Phoshpate Lyase Gene OsSPL1 in Transgenic Tobacco Reduces Salt and oxidative stress Tolerance.	J Integr Plant Biol	54(9)	652-62	2012	SPL1	OsSPL1
34187	22912900	Zhao J., Huang X., Ouyang X., Chen W., Du A., Zhu L., Wang S., Deng X.W., Li S.	OsELF3-1, an Ortholog of Arabidopsis EARLY FLOWERING 3, Regulates Rice Circadian Rhythm and Photoperiodic Flowering.	PLoS ONE	7(8)	e43705	2012	_,PRR59,PRR95,HD3B,CCA1,GHD7,PRR73,HD2,TOC1	OsELF3-2, OsEF3,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
34188	22892321	Sun C., Fang J., Zhao T., Xu B., Zhang F., Liu L., Tang J., Zhang G., Deng X., Chen F., Qian Q., Cao X., Chu C.	The histone methyltransferase SDG724 Mediates H3K36me2/3 Deposition at MADS50 and RFT1 and Promotes Flowering in Rice.	Plant Cell	24(8)	3235-47	2012	SDG736,_,SDG708,MADS50,SDG725,MADS51,RFT1,GI,GHD7,EHD2/RID1,SE1,SE5,HD3A	SDG736, OsSET9,SDG724, LVP1, OsSET34,SDG708,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,OsSDG725, OsSET8, ASHH2,OsMADS51, OsMADS65, MADS65,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsGI, Gi, Os-GI,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
34189	22894565	LIU X., Luo M., Zhang W., ZHAO J., Zhang J., Wu K., Tian L., Duan J.	Histone acetyltransferases in rice (Oryza sativa L.): phylogenetic analysis, subcellular localization and expression.	BMC Plant Biol.	12(1)	145	2012	HAG704,HAC701,HAC704,HAC703,HAG703,HAF701,HAG702,HAM701	OsHAG704,OsHAC701, OsKIX_1, OsHAC5,OsHAC704, OsKIX_4, OsHAC12 ,OsHAC703, OsKIX_2, OsHAC1,OsHAG703,OsHAF701,OsHAG702, GCN5 ,OsHAM701, OsMOF, MOF
34190	22888152	Yang Y., Peng Q., Chen G.X., Li X.H., Wu C.Y.	OsELF3 is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice.	Mol Plant	6(1)	202-15	2013	HD2,RFT1,TOC1,ZTL1,PRR59,GHD7,CCA1,PHYB,HD3B,GI,PRR95,PRR73,HD3A,SE1	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsZTL1, OsFbox066, OsFbox66, Os_F0484,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,phyB, PHYB1, OsPHYB, OsphyB,Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,OsGI, Gi, Os-GI,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
34191	22882555	Ma X., Cheng Z., Qin R., Qiu Y., Heng Y., Yang H., Ren Y., Wang X., Bi J., Ma X., Zhang X., Wang J., Lei C., Guo X., Wang J., Wu F., Jiang L., Wang H., Wan J.	OsARG encodes an arginase that plays critical roles in panicle development and grain production in rice.	Plant J.	73(2)	190-200	2013	NGLF	OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM
34192	22885936	Wang N., Huang H.J., Ren S.T., Li J.J., Sun Y., Sun D.Y., Zhang S.Q.	The rice wall-associated receptor-like kinase gene OsDEES1 plays a role in female gametophyte development.	Plant Physiol.	160(2)	696-707	2012	DEES1,WAK92	WAK91, OsWAK91, OsDEES1,OsWAK92, OsDEES1-L4
34193	0	Salgotra R.K., Gupta B.B., Millwood R.J., Balasubramaniam M., Stewart Jr.	Introgression of bacterial leaf blight resistance and aroma genes using functional marker-assisted selection in rice (Oryza sativa L.)	Euphytica	187(3)	313-323	2012	XA5,XA13,XA21,SK2(T)(SCL, FGR)	xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,Xa21*, Xa21, OsXA21,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
34195	0	Wang Z., Wang F., Zhou R., Wang J., Zhang H.	Identification of quantitative trait loci for cold tolerance during the germination and seedling stages in rice (Oryza sativa L.)	Euphytica	181	405-413	2011		
34197	22038433	Qiu Y., Guo J., Jing S., Zhu L., He G.	Development and characterization of japonica rice lines carrying the brown planthopper-resistance genes BPH12 and BPH6	Theoretical and Applied Genetics	124(3)	485-94	2012		
34198	0	Zhao J., Li J., Xu P., Zhou J., Hu F., Deng X., Deng W., Tao D.	A new gene controlling hybrid sterility between Oryza sativa and Oryza longistaminata	Euphytica	187	339-44	2012	S44	S44(t)
34199	22548231	Gao Q., Yang Z., Zhou Y., Yin Z., Qiu J., Liang G., Xu C.	Characterization of an Abc1 kinase family gene OsABC1-2 conferring enhanced tolerance to dark-induced stress in rice	Gene	498	155-163	2012	_	OsABC1-2, OsAbc1-2
34201	21901547	Silva J., Scheffler B., Sanabria Y., de Guzman C., Galam D., Farmer A., Woodward J., May G., Oard J.	Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing	Theoretical and Applied Genetics	124	63-74	2012		
34203	0	Nelson J.C., Oard J.H., Groth D., Utomo H.S., Jia Y., Liu G., Moldenhauer K.A.K., Correa-Victoria F.J., Fjellstrom R.G., Scheffler B., Prado G.A.	Sheath-blight resistance QTLS in japonica rice germplasm	Euphytica	184	23-34	2012		
34204	0	Cai H.Y., Diao S., He Y.G., Zhang L.P., Liu S.J., Zhu Y.G., Zhang Z.H.	Genetic and physical mapping of qHY-8, a pleiotropic QTL for heading date and yield-related traits in rice	Euphytica	184	109-118	2012	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
34205	21143719	Zhang Q., Wang C., Tian J., Li K., Shou H.	Identification of rice purple acid phosphatases related to posphate starvation signalling	Plant Biol.	13	7-15	2011	PAP7,PAP9A,PAP21A,PAP21C,PAP27C,PAP10D,PAP3C,PAP1B,PAP1A,PAP21B,PAP3B,PAP23,PAP27A,PAP26,PAP3A,PAP18,PAP20A,PAP20B,PAP15,PAP10B,PAP9B,NPP1,PAP1C,PAP10C,_,PAP1D,PAP10A,PHR2	OsPAP7,OsPAP9a,OsPAP21a,OsPAP21c,OsPAP27c,OsPAP10d,OsPAP3c,OsPAP1b, NPP2, OsNPP2,OsPAP1a, NPP3, OsNPP3,OsPAP21b,OsPAP3b,OsPAP23,OsPAP27a, NPP6, OsNPP6,OsPAP26,OsPAP3a,OsPAP18,OsPAP20a,OsPAP20b,OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1,OsPAP10b,OsPAP9b,OsNPP1, OsPAP27b, PAP27B,OsPAP1c, NPP4, OsNPP4,OsPAP10c,OsSPX1, SPX1,OsPAP1d, NPP5, OsNPP5,OsPAP10a, PAP10,OsPHR2, Os-PHR2
34206	0	Yang X., Yu Y., Jiang L., Lin X., Zhang C., Ou X., Osabe K., Liu B.	Changes in DNA methylation and transgenerational mobilization of a transposable element (mPing) by the topoisomerase II inhibitor, etoposide, in rice	BMC Plant Biol.	12	48-	2012	_,_,_,_,_	Osr42,Osr2,Osr23,Osr35,Osr36
34207	0	Chen R., Qiu J., Jiang Y., Dong J., Xu Z., Gao X.	Isolation of a novel MYB transcription factor OsMyb1R from rice and analysis of the response of this gene to abiotic stresses	Afr. J. Biotechnol.	11	3731-3737	2012	_	OsMyb1R, LHY-like_chr.2
34208	0	Liu Y., Gu D., Ding Y., Wang Q., Li G., Wang S.	The relationship between nitrogen, auxin and cytokinin in the growth regulation of rice (Oryza sativa L.) tiller buds	Aust J Crop Sci	5	1019-1026	2011	IPT6,IPT5,IPT8,IPT1,IPT2,IPT7,IPT3,IPT4	OsIPT6, OsIPT6.p,OsIPT5,OsIPT8,OsIPT1,OsIPT2,OsIPT7,OsIPT3,OsIPT4
34209	0	Jiang Y., Dong J., Chen R., Gao X., Xu Z.	Isolation of a novel PP2C gene from rice and its response to abiotic stresses	Afr. J. Biotechnol.	10	7143-7154	2011	PP2C1	OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108
34212	0	Dong J., Jiang Y., Chen R., Xu Z., Gao X.	Isolation of a novel xyloglucan endotransglucosylase (OsXET9) gene from rice and analysis of the response of this gene to abiotic stresses	Afr. J. Biotechnol.	10	17424-17434	2011	XTH9	OsXTH9, OsXET9, XTH1, OsXTH1
34213	0	Rana R.M., Dong S., Ali Z., Khan A.I., Zhang H.S.	Identification and characterization of the Bcl-2- associated athanogene (BAG) protein family in rice	Afr. J. Biotechnol.	11	88-99	2012	BAG1,BAG2,BAG5,BAG6,BAG3,BAG4	OsBAG1,OsBAG2,OsBAG5,OsBAG6,OsBAG3,OsBAG4, EIP1
34215	0	Sperandio M.V.L., Santos L.A., Bucher C.A., Fernandes M.S., de Souza S.R.	Isoforms of plasma membrane H+-ATPase in rice root and shoot are differentially induced by starvation and resupply of NO3- or NH4+	Plant Science	180	251-258	2011	AHA10,AHA6,AHA9,AHA4,AHA5,AHA8,AHA7,AHA1,AHA2,AHA3,NRT2.1,AMT1;1,AMT1;3,NRT2.2,AMT1;2	OSA10, OsA10, osAHA10, AHA10,OSA6, OsA6, osAHA6, AHA6,OSA9, OsA9, osAHA9, AHA9,OSA4, OsA4, osAHA4, AHA4,OSA5, OsA5, osAHA5, AHA5,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa,OSA1, OsA1, osAHA1, AHA1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OSA3, OsA3, osAHA3, AHA3, PAM3,OsNRT2.1, OsNRT2.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsNRT2.2, OsNRT2.1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
34218	0	Sung S.H., Kim B.G., Chong Y., Ahn J.H.	Characterization of Phenylpropanoid O-Methyltransferase from Rice: Molecular Basis for the Different Reactivity Toward Different Substrates	Journal of Plant Biology	54	314-320	2011	_,_,_	ROMT-27, ROMT27,ROMT-17, ROMT17, CCoAOMT1,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT
34219	21221128	Che L., Tang D., Wang K., Wang M., Zhu K., Yu H., Gu M., Cheng Z.	OsAM1 is required for leptotene-zygotene transition in rice.	Cell Res.	21(4)	654-65	2011	RMC1,_,ZEP1,RAD21-4,PAIR2	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsAM1, SWI1, Osam1, AM1,OsZEP1,OsRad21-4, REC8, OsREC8, OsRAD21-4,Pair2, OsPAIR2, OsASY1
34220	19204280	Wojciech P Pawlowski, Chung-Ju Rachel Wang, Inna N Golubovskaya, Jessica M Szymaniak, Shi L., Hamant O., Zhu T., Harper L., William F Sheridan, W Zacheus Cande	Maize AMEIOTIC1 is essential for multiple early meiotic processes and likely required for the initiation of meiosis.	Proc. Natl. Acad. Sci. U.S.A.	106(9)	3603-8	2009	_	OsAM1, SWI1, Osam1, AM1
34221	19558410	Zhu Y., Tingjun D.I., Xu G., Chen X., Zeng H., Yan F., Shen Q.	Adaptation of plasma membrane H(+)-ATPase of rice roots to low pH as related to ammonium nutrition.	Plant Cell Environ.	32(10)	1428-40	2009	AHA10,AHA6,AHA9,AHA4,AHA5,AHA8,AHA7,AHA1,AHA2,AHA3	OSA10, OsA10, osAHA10, AHA10,OSA6, OsA6, osAHA6, AHA6,OSA9, OsA9, osAHA9, AHA9,OSA4, OsA4, osAHA4, AHA4,OSA5, OsA5, osAHA5, AHA5,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa,OSA1, OsA1, osAHA1, AHA1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OSA3, OsA3, osAHA3, AHA3, PAM3
34222	23460029	Yonekura M., Aoki N., Hirose T., Onai K., Ishiura M., Okamura M., Ohsugi R., Ohto C.	The promoter activities of sucrose phosphate synthase genes in rice, OsSPS1 and OsSPS11, are controlled by light and circadian clock, but not by sucrose.	Front Plant Sci	4	31	2013	SPS11,SPS1	sps11, OsSPS11, OsSPS5, SPS5,sps1, OsSPS1, SPS
34223	15247374	C Kate Castleden, Aoki N., Vanessa J Gillespie, Elspeth A MacRae, W Paul Quick, Buchner P., Christine H Foyer, Robert T Furbank, John E Lunn	Evolution and function of the sucrose-phosphate synthase gene families in wheat and other grasses.	Plant Physiol.	135(3)	1753-64	2004	SPS2,SPS8,SPS6,SPS11,SPS1	OsSPS2,OsSPS8, OsSPS4, SPS4,OsSPS6,sps11, OsSPS11, OsSPS5, SPS5,sps1, OsSPS1, SPS
34224	0	Kotb ATTIA, Ke-Gui LI, Chun W.E.I., Guang-Ming HE, Wei S.U., Jin-Shui YANG	Overexpression of the OsPDCD5 Gene Induces Programmed Cell Death in Rice	J Integr Plant Biol	47(9)	1115-1122	2005	_	OsPDCD5, PDCD5
34225	23296688	Jan A., Maruyama K., Todaka D., Kidokoro S., Abo M., Yoshimura E., Shinozaki K., Nakashima K., Kazuko Yamaguchi-Shinozaki	OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes.	Plant Physiol.	161(3)	1202-16	2013	FER1,AOS2,_,_,_,SL,C3H35,_,_,_,_,NRAMP1,MTI4B	OsFER1, OsFer1 ,OsAOS2, CYP74A2, OsAOS, OsAOS1,akin-b, akin-beta,OsARP, OsCTP,,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsPR2, Gns1, OsEGL1,OPT, OsOPT7, OPT7,OsRD22, RD22, OsBURP16, BURP16,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,OsNramp1, OsNRAMP1, OsNramp6,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc 
34226	20150424	Fujiwara T., Maisonneuve S., Isshiki M., Mizutani M., Chen L., Hann Ling Wong, Kawasaki T., Shimamoto K.	Sekiguchi lesion gene encodes a cytochrome P450 monooxygenase that catalyzes conversion of tryptamine to serotonin in rice.	J. Biol. Chem.	285(15)	11308-13	2010	SL	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL
34227	21915334	Johnson A.A., Kyriacou B., Callahan D.L., Carruthers L., Stangoulis J., Lombi E., Tester M.	Constitutive overexpression of the OsNAS gene family reveals single-gene strategies for effective iron- and zinc-biofortification of rice endosperm.	PLoS ONE	6(9)	e24476	2011	NAS3,NAS2,NAS1	OsNAS3,OsNAS2,OsNAS1
34228	17339225	Faure S, Higgins J, Turner A, Laurie DA.	The FLOWERING LOCUS T-like gene family in barley (Hordeum vulgare).	Genetics	176(1)	599-609	2007	FTL4,FTL11,FTL12,FTL13,FTL10,FTL1,FTL6,FTL5,FTL7,FTL8,HD3A,RFT1	OsFT, osFT, FT-L 4, OsFTL4, FT-L4,OsFTL11,OsFTL12, FT-L11,OsFTL13,OsFTL10,FTL, FT-L1, OsFTL1, FTL1,FT-L 6, OsFTL6, FT-L6,FT-L 5, OsFTL5, FT-L5,FT-L 7, OsFTL7,FT-L 8, OsFTL8,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
34229	10583960	Y Kobayashi, H Kaya, K Goto, M Iwabuchi, T Araki	A pair of related genes with antagonistic roles in mediating flowering signals.	Science	286(5446)	1960-2	1999	FTL4	OsFT, osFT, FT-L 4, OsFTL4, FT-L4
34230	22953761	Zhang F., Huang L., Wang W., Zhao X., Zhu L., Fu B., Li Z.	Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background.	BMC Genomics	13(1)	461	2012	_,_,DREB1F,DREB1C,ERF3,DREB1B,DREB1A,WAK112	OsFAD7,Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsWAK112, OsWAK112d 
34231	22446319	Starnes J.H., Thornbury D.W., Novikova O.S., Rehmeyer C.J., Farman M.L.	Telomere-targeted retrotransposons in the rice blast fungus magnaporthe oryzae: Agents of Telomere instability	Genetics	191	389-406	2012		
34233	0	Yang C., Zhao N., Xu C., Liu B., Shi D.	Regulation of ion homeostasis in rice subjected to salt and alkali stresses	Aust J Crop Sci	6	724-731	2012	NHX3,HAK7,CIPK24,HAK10,HKT4,HAK16,HKT1,_,HKT8,HKT6,NHX1,SOS1,CBL4	OsNHX3, OsNHX2, NHX2,OsHAK7,OsCIPK24, SOS2, OsSOS2,OsHAK10,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsHAK16,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsAKT1, Os-AKT1, AKT1,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHKT6, OsHKT1;3, HKT1;3,OsNHX1,OsSOS1, OsNHA1,OsCBL4, SOS3, OsSOS3
34235	0	Wu Q., Hou M.M., Li L.Y., Liu L.J., Hou Y.X., Liu G.Z.	Induction of pathogenesis-related proteins in rice bacterial blight resistant gene Xa21-mediated interactions with Xanthomonas oryzae pv. oryzae	Journal of Plant Pathology	93	455-459	2011	XA21,PR1A,PR1B,PR10A	Xa21*, Xa21, OsXA21,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
34236	0	Liu C.H., Chao Y.Y., Kao C.H.	Abscisic acid is an inducer of hydrogen peroxide production in leaves of rice seedlings grown under potassium deficiency	Botanical Studies	53	229-237	2012	RAB16A	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
34238	0	Cai J., Chen L., Qu H., Lian J., Liu W., Hu Y., Xu G.	Alteration of nutrient allocation and transporter genes expression in rice under N, P, K, and Mg deficiencies	Acta Physiologiae Plantarum	34	939-946	2012	SUT4,SUT1,_,_,SUT3,SUT5,LCS,SUT2	OsSUT4(t), OsSUT4,OsSUT1, OsSUT2,OsMGT, OsMRS2-1,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1,OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsSUT5(t), OsSUT5Z, OsSUT5,OsHAK1, HAK1,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5
34239	0	Chen C., Niu X., Liu Y.	Cloning, expression and RNAi vector transformation of a zinc finger protein gene OsWIP6 from rice	Chinese Journal of Applied and Environmental Biology	18	200-205	2012	_	OsWIP6
34240	0	Sun X.Q., Wang B., Xiao Y.H., Wan C.M., Deng X.J., Wang P.R.	Genetic Analysis and Fine Mapping of Gene ygl98 for yellow-green leaf of Rice	Acta Agronomica Sinica	37	991-997	2011	YGL98	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3
34242	0	Ren H., Song T., Wu T., Sun L., Liu Y., Yang F., Chen Z., Dong H.	Effects of a biocontrol bacterium on growth and defence of transgenic rice plants expressing a bacterial type-III effector	Ann. Microbiol.	56	281-287	2006	EXPA1,ARF1,MSRMK2	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsARF1, arf1, OsARF23, ARF23,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
34244	0	Bao J., Lu Y., Yang F., Zhang G., Shao Y., Corke H., Sun M.	Nucleotide polymorphisms in OsAGP genes and their possible association with grain weight of rice	J. Cereal Sci.	55	312-317	2012		
34245	0	Saeng-ngam S., Takpirom W., Buaboocha T., Chadchawan S.	The role of the OsCam1-1 salt stress sensor in ABA accumulation and salt tolerance in rice	Journal of Plant Biology	55	198-208	2012	_,_,NCED1	OsAAO,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 
34250	22470057	Fukayama H., Ueguchi C., Nishikawa K., Katoh N., Ishikawa C., Masumoto C., Hatanaka T., Misoo S.	Overexpression of Rubisco activase decreases the photosynthetic co2 assimilation rate by reducing rubisco content in rice leaves	Plant and Cell Physiology	53	976-986	2012		
34251	22419106	Shao T., Qian Q., Tang D., Chen J., Li M., Cheng Z., Luo Q.	A novel gene ibf1 is required for the inhibition of brown pigment deposition in rice hull furrows	Theoretical and Applied Genetics	125	381-390	2012	_	IBF1, OsFBX310, FBX310
34252	22414443	Nakamura Y., Ono M., Utsumi C., Steup M.	Functional interaction between plastidial starch phosphorylase and starch branching enzymes from rice during the synthesis of branched maltodextrins	Plant and Cell Physiology	53	869-878	2012		
34255	22433461	Li Y., Ren B., Yang X., Xu G., Shen Q., Guo S.	Chloroplast downsizing under nitrate nutrition restrained mesophyll conductance and photosynthesis in rice (Oryza sativa L.) under drought conditions	Plant and Cell Physiology	53	892-900	2012		
34258	22327484	Ozawa K., Wakasa Y., Ogo Y., Matsuo K., Kawahigashi H., Takaiwa F.	Development of an efficient agrobacterium-mediated gene targeting system for rice and analysis of rice knockouts lacking granule-bound starch synthase (Waxy) and beta1,2-xylosyltransferase	Plant and Cell Physiology	53	755-761	2012	RCN11,WX1	Xyl, OsXylT, RCN11/OsXylT,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
34260	22514089	Eun C.H., Takagi K., Park K.I., Maekawa M., Iida S., Tsugane K.	Activation and epigenetic regulation of DNA transposon nDart1 in rice	Plant and Cell Physiology	53	857-868	2012	ADART1-27,NDART1-6,DART1-38,NDART1-3(6),NDART1-0,NDART1-1,NDART1-2,NDART1-3(3-1),NDART1-3(3-2),NDART1-3(8),NDART1-5,NDART1-7,NDART1-9,NDART1-10,NDART1-11,NDART1-12,DART1-1,DART1-2,DART1-13,DART1-16,DART1-19,DART1-27,DART1-28,DART1-34	aDart1-27,nDART1-6,Dart1-38,nDART1-3(6),nDART1-0,nDART1-1,nDART1-2,nDART1-3(3-1),nDART1-3(3-2),nDART1-3(8),nDART1-5,nDART1-7,nDART1-9,nDART1-10,nDART1-11,nDART1-12,Dart1-1,Dart1-2,Dart1-13,Dart1-16,Dart1-19,Dart1-27,Dart1-28,Dart1-34
34261	22199373	Park Y.I., Do K.H., Kim I.S., Park H.H.	Structural and functional studies of casein kinase i-like protein from rice	Plant and Cell Physiology	53	304-311	2012	_	CKI
34262	22408076	Yin L.L., Xue H.W.	The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development	Plant Cell	24	1049-1065	2012	_,FST 	,OsMADS29, MADS29, OsFST
34263	22492233	Musembi Mutuku J., Nose A.	Changes in the contents of metabolites and enzyme activities in rice plants responding to rhizoctonia solani Kuhn infection: Activation of glycolysis and connection to phenylpropanoid pathway	Plant and Cell Physiology	53	1017-1032	2012		
34269	22395576	Dai X., Wang Y., Yang A., Zhang W.H.	OsMYB2P-1, an R2R3 MYB transcription factor, is involved in the regulation of phosphate-starvation responses and root architecture in rice	Plant Physiol.	159	169-183	2012		
34272	22499210	Zhang C.J., Guo Y.	OsTRXh1 regulates the redox state of the apoplast and influences stress responses in rice	Plant Signaling and Behavior	7	440-2	2012		
34273	0	Wang H., Wu Z., Zhou Y., Han J., Shi D.	Effects of salt stress on ion balance and nitrogen metabolism in rice	Plant, Soil and Environment	58	62-67	2012		
34274	0	Siao W., Chen J.Y., Hsiao H.H., Chung P., Wang S.J.	Characterization of OsSUT2 expression and regulation in germinating embryos of rice seeds	Rice (N Y)	4(2)	39-49	2011		
34275	0	Bhasin H., Bhatia D., Raghuvanshi S., Lore J.S., Sahi G.K., Kaur B., Vikal Y., Singh K.	New PCR-based sequence-tagged site marker for bacterial blight resistance gene Xa38 of rice	Molecular Breeding	30	607-611	2012	XA38	Xa38
34277	22655071	Wang H., Wu Z., Han J., Zheng W., Yang C.	Comparison of Ion balance and nitrogen metabolism in old and young leaves of Alkali-stressed rice plants	PLoS ONE	7	e37817	2012		
34278	0	Takekawa Y., Nakamura T.	Rice OsHOL1 and OsHOL2 proteins have S-adenosyl-L-methionine-dependent methyltransferase activities toward iodide ions	Plant Biotechnology	29	103-108	2012	_,_	OsHOL2,OsHOL1
34279	22393712	Li Y., Chen Y., Wu J., He C.	Expression and functional analysis of OsRboh gene family in rice immune response	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	27	1574-1585	2011	RBOHI,RBOHD,RBOHB,RBOHC,RBOHE,RBOHG,RBOHA	OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2
34281	22751314	Hsu Y.Y., Chao Y.Y., Kao C.H.	Biliverdin-promoted lateral root formation is mediated through heme oxygenase in rice	Plant Signaling and Behavior	7(7)	885-7	2012		
34282	20404569	Wu P., Xu J.	Does OsPHR2, central Pi-signaling regulator, regulate some unknown factors crucial for plant growth?	Plant Signaling and Behavior	5	712-714	2010	_,PT2,_,PHR2	OsSPX3, SPX3,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsSPX1, SPX1,OsPHR2, Os-PHR2
34284	0	Noguera D., Barot S., Laossi K.R., Cardoso J., Lavelle P., Cruz de Carvalho M.H.	Biochar but not earthworms enhances rice growth through increased protein turnover	Soil Biology and Biochemistry	52	13-20	2012	_,_,_,_,_,_,RBCS	OsCatB,OsAP1,OsSP1, OsSub20, SUB20,OsSub42, SUB42, OsSP2, OS-MSP ,OsCP1,Oryzasin,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
34287	0	Wang H., Ahan J., Wu Z., Shi D., Liu B., Yang C.	Alteration of nitrogen metabolism in rice variety 'Nipponbare' induced by alkali stress	Plant Soil	355	131-147	2012	_,GS2,GDH3,AMT3;1,AMT2;1,AMT3;2,AMT3;3,GLN1;2,P5CS,PTR6,AMT1;1,GDH1,ASN,GLT1,NRT1,AMT1;3,AMT1;2,NRT2.3,AMT2;2,ABC1,GLN1;1,_,AMT2;3,_	OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,OsGS2, GLN2, RGS31,OsGDH3,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT2;1, AMT2-1, OsAMT2.1,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsGDH1,OsASN2, OsAS, OsAS2, AS2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 ,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsAMT2;2, AMT2;2, OsAMT2.2,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsNR1, NR1, nia1, OsNIA1, NIA1,OsAMT2;3, AMT2;3, OsAMT2.3,OsProDH
34288	19419967	Nagatoshi Y., Nakamura T.	Arabidopsis HARMLESS TO OZONE LAYER protein methylates a glucosinolate breakdown product and functions in resistance to Pseudomonas syringae pv. maculicola.	J. Biol. Chem.	284(29)	19301-9	2009	_,_	OsHOL1,OsHOL2
34295	0	Luo X.D., Dai L.F., Cao J.F., Jian S.R., Chen Y.L., Hu B.L., Xie J.K.	Identification and molecular cytology analysis of cold tolerance introgression lines derived from Oryza sativa L. mating with O. rufipogon Griff.	Euphytica	187	461-9	2012		
34297	22836167	Kim D.S., Lee K.J., Yim W.C., Kim J.B., Ha B.K., Kim S.H., Kang S.Y.	Transcriptional network analysis of the tryptophan-accumulating rice mutant during grain filling	Molecular Genetics and Genomics	287(9)	699-709.	2012	ASA2,ASA1	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
34301	0	Zhang W., Zhang L., Qiao L., Wu J., Zhao G., Jing R., Lv W., Jia J.	Cloning and haplotype analysis of TaSTE, which is associated with plant height in bread wheat (Triticum aestivum L.)	Molecular Breeding	31	47-56	2012	_	OsSTE1, OsDWF7
34309	0	Lee H., Ko Y.J., Cha J.Y., Park S.R., Ahn I., Hwang D.J.	The C-terminal region of OsWRKY30 is sufficient to confer enhanced resistance to pathogen and activate the expression of defense-related genes	Plant Biotechnol Rep	7	221-30	2013	PR10A,WRKY30	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY30
34311	22942769	Law Y.S., Gudimella R., Song B.K., Ratnam W., Harikrishna J.A.	Molecular characterization and comparative sequence analysis of defense-related gene, Oryza rufipogon receptor-like protein kinase 1	Int J Mol Sci	13	9343-9362	2012	_,_	OsRPK1, OsJNipponRPK1, OsI219RPK1, OsI9311RPK1,OsJ_RLL1
34312	0	Sun L.J., Zhang Q., Tie-Gang L.U., Sun Y.	Screen of receptor-like kinase OsWAK50 intracellular interacting proteins by yeast two-hybrid system	Progress in Biochemistry and Biophysics	39	438-447	2012	WAK53,WAK50,_,_,_	OsWAK53, OsWAK53a,OsWAK50,OsSWIB,OsSWI3C, OsCHB705, CHB705,OsSK4, OsSKL1
34313	23053954	Jun L., Xiaoming W.	Genome-wide identification, classification and expression analysis of genes encoding putative fasciclin-like arabinogalactan proteins in Chinese cabbage (Brassica rapa L.).	Mol. Biol. Rep.	39(12)	10541-55	2012	FLA22,AGP9,AGP17,AGP28,FLA15,FLA8,_,AGP10,AGP12,AGP15,AGP18,_,_,AGP2,AGP4,AGP5,AGP6,AGP13,AGP8,AGP11,AGP25,AGP20,AGP21,AGP3,AGP16,AGP22,AGP23,AGP24,AGP27,AGP26,AGP30,_,_,_,_,FLA1,FLA4,FLA3,FLA5,FLA11,FLA6,FLA9,FLA7,FLA12,FLA14,FLA13,FLA16,FLA17,FLA18,FLA24,FLA19,FLA20,FLA21,FLA23,FLA25,FLA27,FLA26,AGP31,AGP14,AGP19,_,AGP1,AGP29,AGP7,FLA2,FLA10,ENODL1,ENODL6,ENODL18	OsFLA22,OsAGP9,OsAGP17,OsAGP28,OsFLA15,OsFLA8,OsLLA2, OsLTPG27, LLA2, LTPG27,OsAGP10,OsAGP12,OsAGP15,OsAGP18,OsLLA4, LLA4,OsLLA5, LLA5,OsAGP2,OsAGP4,OsAGP5,OsAGP6,OsAGP13,OsAGP8,OsAGP11,OsAGP25,OsAGP20,OsAGP21,OsAGP3,OsAGP16,OsAGP22,OsAGP23,OsAGP24,OsAGP27,OsAGP26,OsAGP30,OsLLA3, LLA3,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21,OsLLA8, LLA8,OsFLA1,OsFLA4,OsFLA3,OsFLA5,OsFLA11,OsFLA6,OsFLA9,OsFLA7,OsFLA12,OsFLA14,OsFLA13,OsFLA16,OsFLA17,OsFLA18,OsFLA24,OsFLA19,OsFLA20,OsFLA21,OsFLA23,OsFLA25,OsFLA27,OsFLA26,OsAGP31,OsAGP14, OsAGPEP2,OsAGP19, OsAGPEP1,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsAGP1,OsAGP29,OsAGP7,OsFLA2,OsFLA10,OsENODL1, OsELA1, ELA1,OsENODL6, OsELA2, ELA2, OsEnS-24,OsENODL18, OsELA3, ELA3 
34314	17448255	Montanini B., Blaudez D., Jeandroz S., Sanders D., Chalot M.	Phylogenetic and functional analysis of the Cation Diffusion Facilitator (CDF) family: improved signature and prediction of substrate specificity.	BMC Genomics	8	107	2007	MTP1	OsMTP1
34315	16230331	Jae Bok Heo, Hee Sun Rho, Se Won Kim, Sung Min Hwang, Hyun Jin Kwon, Min Yeop Nahm, Woo Young Bang, Jeong Dong Bahk	OsGAP1 functions as a positive regulator of OsRab11-mediated TGN to PM or vacuole trafficking.	Plant Cell Physiol.	46(12)	2005-18	2005	_,_,_,_	OsRab8A5, OsRab8a,OsGDI3,OsGAP1, GAP1,OsRab11D1, OsRab11, Rab11, ric2
34316	16415208	Gu Y., Li S., Elizabeth M Lord, Yang Z.	Members of a novel class of Arabidopsis Rho guanine nucleotide exchange factors control Rho GTPase-dependent polar growth.	Plant Cell	18(2)	366-81	2006	ROPGEF1,ROPGEF3,ROPGEF2,ROPGEF6,ROPGEF4,ROPGEF8,ROPGEF7,ROPGEF9,ROPGEF11/12,BGL,ROPGEF5	Os RopGEF1, OsRopGEF1, RopGEF1,Os RopGEF3, OsRopGEF3, RopGEF3,Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159,Os RopGEF6, OsRopGEF6, RopGEF6,Os RopGEF4, OsRopGEF4, RopGEF4,Os RopGEF8, OsRopGEF8, RopGEF8,Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2,Os RopGEF9, OsRopGEF9, RopGEF9,Os RopGEF11, OsRopGEF11, RopGEF11, Os RopGEF12, OsRopGEF12, RopGEF12, OsRopGEF11/12,bgl, OsRopGEF10, Os RopGEF10, RopGEF10,OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B
34317	11673635	K Ishimaru, T Hirose, N Aoki, S Takahashi, K Ono, S Yamamoto, J Wu, S Saji, T Baba, M Ugaki, T Matsumoto, R Ohsugi	Antisense expression of a rice sucrose transporter OsSUT1 in rice (Oryza sativa L.).	Plant Cell Physiol.	42(10)	1181-5	2001	SUT1	OsSUT1, OsSUT2
34318	17138625	Graham N Scofield, Aoki N., Hirose T., Takano M., Colin L D Jenkins, Robert T Furbank	The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants.	J. Exp. Bot.	58(3)	483-95	2007	SUT1	OsSUT1, OsSUT2
34319	17587305	Nakashima K., Lam-Son P Tran, Dong Van Nguyen, Fujita M., Maruyama K., Todaka D., Ito Y., Hayashi N., Shinozaki K., Kazuko Yamaguchi-Shinozaki	Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice.	Plant J.	51(4)	617-30	2007	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
34320	16172526	Ohnishi T., Sugahara S., Yamada T., Kikuchi K., Yoshiba Y., Hiro-Yuki Hirano, Tsutsumi N.	OsNAC6, a member of the NAC gene family, is induced by various stresses in rice.	Genes Genet. Syst.	80(2)	135-9	2005	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
34321	15029955	Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.	Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.	DNA Res.	10(6)	239-47	2003	NAC6,NAC73,CUC1,NAC4,NAC75,NAC65,NAC12,NAC72,NAC32,_,_,NAC28,_,_,NAC13,NAC15,NAC18,NAC19,NAC21,NAC26,NAC41,NAC47,NAC49,NAC59,NAC66,NAC63,_,NAC55,NAC36,NAC31,NAC45,NAC60,NAC14,NAC8,NAC42,NAC70,NAC37,NAC25,Y37,NAC29,NAC10,NAC40,NAC3,NAC17,NAC5,_,NAC62,NAC22,NAC61,NAC24,NAC1,_,NAC2,TMS5	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,ONAC073, ONAC73,ONAC039, ONAC39, NAC39, OsCUC1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,ONAC075, ONAC75,ONAC065, ONAC65,ONAC012, ONAC12,ONAC072, ONAC72,ONAC032, ONAC32, ONAC056, ONAC56,ONAC006, ONAC6,ONAC008, ONAC8,ONAC028, ONAC28,ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52,ONAC001, ONAC1,ONAC013, ONAC13, ONAC064, ONA064,ONAC015, ONAC15, ONAC069, ONAC69,ONAC018, ONAC18, OsSWN4,ONAC019, ONAC19,ONAC021, ONAC21,ONAC026, ONAC26, OsEnS-8,ONAC041, ONAC41, ONAC050, ONAC50,ONAC047, ONAC47,ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57,ONAC059, ONAC59,ONAC066, ONAC66,ONAC063, ONAC63,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3,ONAC055, ONAC55,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,ONAC031, ONAC31, OsSWN3,ONAC045, ONAC45,ONAC060, ONAC60, OMTN3, OsNAC60,ONAC014, ONAC14, OsNAC14, NAC14,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC070, ONAC70, OsNTL6, NTL6,ONAC037, ONAC37, OsNTL2, NTL2,ONAC025, ONAC25, OsEnS-144,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2 ,ONAC010, ONAC10, OsSTA199,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1,ONAC062, ONAC62, OsSND2, SND2,ONAC022, ONAC22,ONAC061, ONAC61,NAC94, ONAC024, ONAC24,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
34322	19897605	Marcelo C Pomeranz, Hah C., Pei-Chi Lin, Shin Gene Kang, John J Finer, Perry J Blackshear, Jyan-Chyun Jang	The Arabidopsis tandem zinc finger protein AtTZF1 traffics between the nucleus and cytoplasmic foci and binds both DNA and RNA.	Plant Physiol.	152(1)	151-65	2010	DOS,C3H37,C3H33,C3H67,C3H35,C3H50,C3H24,C3H10	OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsC3H37, OsTZF7, OsCCCH-Zn-1,OsC3H33, OsTZF5, OsCCCH-Zn-5,OsC3H67, OsTZF4, OsCCCH-Zn-7,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsC3H50, OsTZF6, OsCCCH-Zn-6,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12
34323	19712067	Zhou L., Ming-Yan Cheung, Zhang Q., Cai-Lin Lei, Shi-Hong Zhang, Samuel Sai-Ming Sun, Hon-Ming Lam	A novel simple extracellular leucine-rich repeat (eLRR) domain protein from rice (OsLRR1) enters the endosomal pathway and interacts with the hypersensitive-induced reaction protein 1 (OsHIR1).	Plant Cell Environ.	32(12)	1804-20	2009	_,_,_	OsHIR1, OsHSI1,OsLRP, OsLRR1, LRR1,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2
34324	0	Dhaliwal H.S., Das A, Singh A, Gupta V.K.	Isolation of insertional mutants in indica rice using Ds transposable element of maize.	Rice Genet Newslett	18	98-99	2001	_	OsPE
34325	19816724	Puri A., P Osman Basha, Kumar M., Rajpurohit D., Gursharn S Randhawa, Shahryar F Kianian, Rishi A., Harcharan S Dhaliwal	The polyembryo gene (OsPE) in rice.	Funct. Integr. Genomics	10(3)	359-66	2010	_	OsPE
34326	20178989	Yu Q., Schaub P., Ghisla S., Salim Al-Babili, Anja Krieger-Liszkay, Beyer P.	The Lycopene cyclase CrtY from Pantoea ananatis (formerly Erwinia uredovora) catalyzes an FADred-dependent non-redox reaction.	J. Biol. Chem.	285(16)	12109-20	2010	_	OsLCYb, OsLCYbeta, OsLYCb, OsLCY
34327	22207384	Li S.P., Duan Y.L., Chen Z.W., Guan H.Z., Wang C.L., Zheng L.L., Zhou Y.C., Wu W.R.	[Genetic analysis and gene mapping of ddf1, a pleiotropic gene involving in both vegetable and reproductive growth in rice].	Yi Chuan	33(12)	1374-9	2011	_	DDF1
34328	0	Chang P, Huang C, Chang F, Tseng T, Lin W, Lin C	Isolation and characterization of the third gene encoding a 16.9 kDa class I low-molecular-mass heat shock protein, Oshsp 16.9 C, in rice.	Botanical Bulletin of Academia Sinica	42(2)	85-92	2001	HSP16.9C	Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C
34329	17428833	Y H Duan, Y L Zhang, L T Ye, X R Fan, G H Xu, Q R Shen	Responses of rice cultivars with different nitrogen use efficiency to partial nitrate nutrition.	Ann. Bot.	99(6)	1153-60	2007	AMT1;2,AMT1;3,AMT1;1	OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
34330	23184051	Miah G., Rafii M.Y., R .Ismail M., B. Puteh A., A. Rahim H., Asfaliza R., A. Latif M.	Blast resistance in rice: a review of conventional breeding to molecular approaches	Mol. Biol. Rep.	40(3)	2369-88	2013	PBR*,PI7,PI38,PI34,PI44,PI18,PIKS,IPI,IPI3,PI21,PI31,PI20,PI19,PI32,PI62,PI39,PI6,PI157,PI12,PIKP,PIKM,PIA,PICO39,PITQ6,PIG,PILM2,PIGD2,PIGD3,PI24,PI25,PIK,PIKH,PI24,PITQ5,PI,PIKG,MPI,PIZH,PI40,PI8,PI26,PI10,PIIS1,PID1,PI5,PID2,PI13,PI16,PI23,PI17,PI26,PI28,PI29,PI15,PI27,PI39,PIF,PII2,PISE1,PIKUR2,PIZ5,PI3,PI22,PIKUR1,PITP,PIY2,PI14,PI27,PI33,PI35,PIGD1,PI67,PIIS2,PIGM,PII,PI36,PIT,PIY1,PI21,PITA,PI37,PIZ,PISH,PI9,PIB,PI1,PIZT,PI12,PIQ1,PI13,PI14,PB1	PBR*,Pi7, Pi-7(t), Pi7(t),Pi38, Pi-38,Pi34, RMg71, Pi24(t),Pi44(t)*, Pi44(t), Pi44, Pi-44(t),Pi18(t)*, Pi18(t), Pi18, Pi-18(t), Pi-18,Pi-ks, Pi-s, Pik-s, Piks,IPi(t)*, IPi. Rmg56,IPi3(t)*, IPi3, Rmg57,Pi21(t)*, Pi21, RMg41, Pi-21(t), Pi21(t),Pi-31(t), Pi31(t)*, Pi31(t),Pi20, Pi20(t),Pi19(t), Pi14, Pi19,Pi-32(t), Pi32(t)*, Pi32(t),Pi62(t)*(=Pita?), Pi62(t)*, Pi62, Pi62(t), Pi-62(t),Pi39(t), Pi39,Pi6(t)*, Pi6, Pi-6(t), pi6(t),Pi157*, Pi157(t)*, Pi-157, Pi157,Pi12(t), Pi12(t)*, Pi12, Pi-12(t) ,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi a, Pia, Pi-a, Pia-1, Pia-2,PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t),Pi-tq6, Pitq6,Pi-g(t),Pi-lm2, Pilm2, Pi lm2, Pib2,Pi-GD-2(t), PiGD-2(t),Pi-GD-3(t), PiGD-3(t),Pi24(t), Pi-24(t), Pi-24, Pi24,Pi25, Pi25(t),Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi24, Pi24(t),Pitq5*, Pi-tq5, Pi-tq5, Pitq-5, Pitq5,Pi(t)*, Pi(t),Pikg, Pik-g,MPi z(Rb6), Rb6, MPiz,Pizh,Pi40(t), Pi40, pi40, Pi-40(t), Pi-40,Pi8, Pi-8,Pi26(t), Pi26,Pi10(t)*, Pi10, Pi-10t, Pi-10, Pi-10(t),Pi is1(Rb4), Rb4, Rb-4, Piis1, Pi-is-1,Pi-d1, Pi-d(t), Pi-d(t)1, PiD1(t), Pid1, Pid1(t),Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t),Pi13(t), Pi13(t)*, Pi13,Pi16(t), Pi16, Pi-16(t),Pi23(t)*, Pi23(t), Pi23, RMg43, Pi-23(t),Pi17(t), Pi17, Pi-17(t),Pi26(t), Pi-26(t),Pi28(t), Pi-28(t),Pi-29(t), Pi29(t),Pi15(t), Pi15, RMg34.,Pi27(t), Pi-27(t),Pi39(t), Pi39,Pi f, PIF, Pif, RMg3, Pi-f,Pi i2, Pii2, Pii2(t),Pi se1(Rb1), Rb1, Pise1, RMg11, Pi-se, Pi-se-1, Pise-1, Rb-1,Pi kur2*, PIKUR2, Pikur2, Pikur2*, RMg10, Pi-kur 2, Pi-kur2,Piz-5, Pi-z5, Piz5, Pi-2(t), Pi-2, Pi2,Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pi5-2,Pi22(t)*, Pi22, RMg42, pi22(t), Pi-22(t),Pi kur1*, PIKUR1, Pikur1*, Pikur1, RMg9, Pi-kur 1, Pi-kur1,Pi-tp(t), Pitp(t), Pi-tp,Pi-y2, Pi-y2(t), Pi-y1(t), Piy2(t), Pi-y(t),Pi14(t), Pi14(t)*, Pi14,Pi27, Pi27(t), Pi-27(t),Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33,Pi35(t),Pi-GD-1(t), PiGD1, PiGD-1(t),Pi67(t)*, Pi67, Pi67(t),Pi is2(Rb5), Rb5, Piis2, Pi-is-2, Rb-5,Pigm(t), Pi-gm(t), Pigm,Pi i, Pii, Pi-i, Pii(t),Pi36(t), Pi36,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,Pi-y1(t), Pi-y(t), Piy1(t),pi21, rMg40,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi37(t), Pi37,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi sh, Pish, Pi-sh, Pish(t),Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Pi12(t), Pi12(t)*, Pi12, Pi-12(t),Piq1*, Pitq1*, Pitq1, Pi-tq1, Pitq-1,Pi13(t), Pi13(t)*, Pi13, Pi-13(t)*,Pi14(t), Pi14(t)*, Pi14,Pb1, Pbst, RMG58.
34331	16908506	Wakasa K., Hasegawa H., Nemoto H., Matsuda F., Miyazawa H., Tozawa Y., Morino K., Komatsu A., Yamada T., Terakawa T., Miyagawa H.	High-level tryptophan accumulation in seeds of transgenic rice and its limited effects on agronomic traits and seed metabolite profile.	J. Exp. Bot.	57(12)	3069-78	2006	ASA2,ASA1	OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2,OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D
34332	0	Poornejad N., Karimi K., Behzad T.	Improvement of saccharification and ethanol production from rice straw by NMMO and [BMIM][OAc] pretreatments	Ind Crops Prod	41	408-413	2013		
34333	23053415	Park S., Kim Y.S., Rupasinghe S.G., Schuler M.A., Back K.	Rice P450 reductases differentially affect P450-mediated metabolism in bacterial expression systems.	Bioprocess Biosyst Eng	36(3)	325-31	2013	_,_,_	OsCPR2,OsCPR3,OsCPR1, CPR1
34334	23082824	Wang H., Zhang M., Guo R., Shi D., Liu B., Lin X., Yang C.	Effects of salt stress on ion balance and nitrogen metabolism of old and young leaves in rice (Oryza sativa L.).	BMC Plant Biol.	12	194	2012	HKT8,SOS1,HKT4,GDH2,HAK10,GS2,HAK16,ABC1,PTR6	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsSOS1, OsNHA1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsGDH2,OsHAK10,OsGS2, GLN2, RGS31,OsHAK16,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 
34335	17301500	Ren H., Gu G., Long J., Yin Q., Wu T., Song T., Zhang S., Chen Z., Dong H.	Combinative effects of a bacterial type-III effector and a biocontrol bacterium on rice growth and disease resistance.	J. Biosci.	31(5)	617-27	2006	ARF1,_,MSRMK2,EXPA1	OsARF1, arf1, OsARF23, ARF23,OsLP, PR-5, 14b,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
34337	21422823	Campos-Soriano L., Segundo B.S.	New insights into the signaling pathways controlling defense gene expression in rice roots during the arbuscular mycorrhizal symbiosis.	Plant Signal Behav	6(4)	553-7	2011		
34342	21595879	Campos-Soriano L., G?mez-Ariza J., Bonfante P., San Segundo B.	A rice calcium-dependent protein kinase is expressed in cortical root cells during the presymbiotic phase of the arbuscular mycorrhizal symbiosis.	BMC Plant Biol.	11	90	2011		
34344	21621743	Yi X., Zhang Z., Zeng S., Tian C., Peng J., Li M., Lu Y., Meng Q., Gu M., Yan C.	Introgression of qPE9-1 allele, conferring the panicle erectness, leads to the decrease of grain yield per plant in japonica rice (Oryza sativa L.).	J Genet Genomics	38(5)	217-23	2011		
34345	21531900	Morey C., Mookherjee S., Rajasekaran G., Bansal M.	DNA free energy-based promoter prediction and comparative analysis of Arabidopsis and rice genomes.	Plant Physiol.	156(3)	1300-15	2011		
34346	20951807	Kim N.S., Yu H.Y., Chung N.D., Shin Y.J., Kwon T.H., Yang M.S.	Production of functional recombinant bovine trypsin in transgenic rice cell suspension cultures.	Protein Expr. Purif.	76(1)	121-6	2011		
34347	21530375	Wen X., Deng Q., Guo J., Yang S.	Ultra-sensitive determination of cadmium in rice and water by UV-vis spectrophotometry after single drop microextraction.	Spectrochim Acta A Mol Biomol Spectrosc	79(3)	508-12	2011		
34348	21763543	Hwang S.H., Yie S.W., Hwang D.J.	Heterologous expression of OsWRKY6 gene in Arabidopsis activates the expression of defense related genes and enhances resistance to pathogens.	Plant Sci.	181(3)	316-23	2011	_,WRKY6	OsPR1, OsPR1a, PR1a, PR1,OsWRKY6, WRKY-6
34349	21281270	Kim S.I., Andaya V.C., Tai T.H.	Cold sensitivity in rice (Oryza sativa L.) is strongly correlated with a naturally occurring I99V mutation in the multifunctional glutathione transferase isoenzyme GSTZ2.	Biochem. J.	435(2)	373-80	2011		
34350	21575196	Gu H., Zhu P., Jiao Y., Meng Y., Chen M.	PRIN: a predicted rice interactome network.	BMC Bioinformatics	12(1)	161	2011		
34351	21491156	Chen Y.H., Kao C.H.	Calcium is involved in nitric oxide- and auxin-induced lateral root formation in rice.	Protoplasma	249(1)	187-95	2012		
34356	21482531	Chen H.X., Zhou C.B., Xing Y.Z.	[A new rice dwarf1 mutant caused by a frame-shift mutation].	Yi Chuan	33(4)	397-403	2011		
34359	21113680	Gaur V.S., Singh U.S., Kumar A.	Transcriptional profiling and in silico analysis of Dof transcription factor gene family for understanding their regulation during seed development of rice Oryza sativa L.	Mol. Biol. Rep.	38(4)	2827-48	2011		
34362	21726383	DU Z., Xiao D., Wu J., Jia D., Yuan Z., Liu Y., Hu L., Han Z., Wei T., Lin Q., Wu Z., Xie L.	p2 of Rice stripe virus (RSV) interacts with OsSGS3 and is a silencing suppressor.	Mol. Plant Pathol.	12(8)	808-14	2011	_	OsSGS3
34363	21533902	Ma J., Song Y., Wu B., Jiang M., Li K., Zhu C., Wen F.	Production of transgenic rice new germplasm with strong resistance against two isolations of Rice stripe virus by RNA interference.	Transgenic Res.	20(6)	1367-77	2011		
34365	21595523	Zhang G., Cheng Z., Zhang X., Guo X., Su N., Jiang L., Mao L., Wan J.	Double repression of soluble starch synthase genes SSIIa and SSIIIa in rice (Oryza sativa L.) uncovers interactive effects on the physicochemical properties of starch.	Genome	54(6)	448-59	2011		
34371	21678052	Gaur V.S., Singh U.S., Gupta A.K., Kumar A.	Understanding the differential nitrogen sensing mechanism in rice genotypes through expression analysis of high and low affinity ammonium transporter genes.	Mol. Biol. Rep.	39(3)	2233-41	2011		
34377	21360198	Kwon S.W., Cho Y.C., Lee J.H., Suh J.P., Kim J.J., Kim M.K., Choi I.S., Hwang H.G., Koh H.J., Kim Y.G.	Identification of quantitative trait loci associated with rice eating quality traits using a population of recombinant inbred lines derived from a cross between two temperate japonica cultivars.	Mol. Cells	31(5)	437-45	2011		
34382	21696979	Lidon F.C., Ramalho J.C.	Impact of UV-B irradiation on photosynthetic performance and chloroplast membrane components in Oryza sativa L.	J. Photochem. Photobiol. B, Biol.	104(3)	457-66	2011		
34385	21562821	Tran N.A., Daygon V.D., Resurreccion A.P., Cuevas R.P., Corpuz H.M., Fitzgerald M.A.	A single nucleotide polymorphism in the Waxy gene explains a significant component of gel consistency.	Theor. Appl. Genet.	123(4)	519-25	2011	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
34388	21688166	Chen Y., Tian J.C., Wang W., Fang Q., Akhtar Z.R., Peng Y.F., Cui H., Guo Y.Y., Song Q.S., Ye G.Y.	Bt rice expressing Cry1Ab does not stimulate an outbreak of its non-target herbivore, Nilaparvata lugens.	Transgenic Res.	21(2)	279-91	2011		
34398	21489969	Parlanti S., Kudahettige N.P., Lombardi L., Mensuali-Sodi A., Alpi A., Perata P., Pucciariello C.	Distinct mechanisms for aerenchyma formation in leaf sheaths of rice genotypes displaying a quiescence or escape strategy for flooding tolerance.	Ann. Bot.	107(8)	1335-43	2011	ACO1,APX1,SUB1A	OsACO1, ACO,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
34400	21385389	Ding Z., Wang C., Chen S., Yu S.	Diversity and selective sweep in the OsAMT1;1 genomic region of rice.	BMC Evol. Biol.	11	61	2011	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
34402	21421424	Bonnecarr?re V., Borsani O., D?az P., Capdevielle F., Blanco P., Monza J.	Response to photoxidative stress induced by cold in japonica rice is genotype dependent.	Plant Sci.	180(5)	726-32	2011		
34406	21684871	Chen J., Luo W.X., Li M., Luo Q.	[Chromosome recombination in rice meiosis].	Yi Chuan	33(6)	648-53	2011		
34408	21414017	Ranathunge K., Lin J., Steudle E., Schreiber L.	Stagnant deoxygenated growth enhances root suberization and lignifications, but differentially affects water and NaCl permeabilities in rice (Oryza sativa L.) roots.	Plant Cell Environ.	34(8)	1223-40	2011		
34409	21533176	Seo Y.S., Chern M., Bartley L.E., Han M., Jung K.H., Lee I., Walia H., Richter T., Xu X., Cao P., Bai W., Ramanan R., Amonpant F., Arul L., Canlas P.E., Ruan R., Park C.J., Chen X., Hwang S., Jeon J.S., Ronald P.C.	Towards establishment of a rice stress response interactome.	PLoS Genet.	7(4)	e1002020	2011		
34412	21296585	Gimeno-Gilles C., Gervais M.L., Planchet E., Satour P., Limami A.M., Lelievre E.	A stress-associated protein containing A20/AN1 zing-finger domains expressed in Medicago truncatula seeds.	Plant Physiol. Biochem.	49(3)	303-10	2011	SAP8	Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1
34415	21493662	Noguchi J., Chaen K., Vu N.T., Akasaka T., Shimada H., Nakashima T., Nishi A., Satoh H., Omori T., Kakuta Y., Kimura M.	Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.	Glycobiology	21(8)	1108-16	2011		
34417	21468744	Somyong S., Munkvold J.D., Tanaka J., Benscher D., Sorrells M.E.	Comparative genetic analysis of a wheat seed dormancy QTL with rice and Brachypodium identifies candidate genes for ABA perception and calcium signaling.	Funct. Integr. Genomics	11(3)	479-90	2011		
34418	21553108	Zhang Z., Wang H., Wang X., Bi Y.	Nitric oxide enhances aluminum tolerance by affecting cell wall polysaccharides in rice roots.	Plant Cell Rep.	30(9)	1701-11	2011		
34420	21549224	Zhao X.L., Shi Z.Y., Peng L.T., Shen G.Z., Zhang J.L.	An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.	N Biotechnol	28(6)	788-97	2011	PIL15,TOC1,PIL14,PIL12,PIL13,PIL11,PIL16,_,SE1,GI,_	OsPIL15, OsbHLH105, PIF3, OsPIF3,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPIL14, OsbHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsPIL12, OsbHLH103, bHLH103,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,APG, OsPIL16, OsbHLH106,OsLF, LF, OsbHLH119,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsGI, Gi, Os-GI,OsHFR, OsbHLH101
34425	21451255	Lee S.K., Kim B.G., Kwon T.R., Jeong M.J., Park S.R., Lee J.W., Byun M.O., Kwon H.B., Matthews B.F., Hong C.B., Park S.C.	Overexpression of the mitogen-activated protein kinase gene OsMAPK33 enhances sensitivity to salt stress in rice (Oryza sativa L.).	J. Biosci.	36(1)	139-51	2011		
34426	21486304	Yan M., Fan X., Feng H., Miller A.J., Shen Q., Xu G.	Rice OsNAR2.1 interacts with OsNRT2.1, OsNRT2.2 and OsNRT2.3a nitrate transporters to provide uptake over high and low concentration ranges.	Plant Cell Environ.	34(8)	1360-72	2011	NRT2.1,NAR2.1,NRT2.2,NAR2.2,NRT2.3	OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A,OsNRT2.2, OsNRT2.1,OsNAR2.2, OsNRT3.1B,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
34430	21731454	Xu S., Hu B., He Z., Ma F., Feng J., Shen W., Yang J.	Enhancement of Salinity Tolerance during Rice Seed Germination by Presoaking with Hemoglobin.	Int J Mol Sci	12(4)	2488-501	2011	SODA1,SODCC1,APX1,CATA	SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
34434	21633891	Zhang Y.M., Zheng Y.M., Xiao N., Wang L.N., Zhang Y., Fang R.X., Chen X.Y.	Functional analysis of the HS185 regulatory element in the rice HSP70 promoter.	Mol. Biol. Rep.	39(2)	1649-57	2011		
34436	21509472	Liang Y.S., Zhang Q.J., Wang S.Q., Cao L.Y., Gao Z.Q., Li P., Cheng S.H.	Microsatellite Analysis of Homozygosity Progression of Heterozygous Genotypes Segregating in the Rice Subspecies Cross Pei'ai64s/Nipponbare.	Biochem. Genet.	49(9-10)	611-24	2011		
34438	21534978	Zhou G., Wang X., Yan F., Wang X., Li R., Cheng J., Lou Y.	Genome-wide transcriptional changes and defence-related chemical profiling of rice in response to infestation by the rice striped stem borer Chilo suppressalis.	Physiol Plant	143(1)	21-40	2011		
34439	21741836	Fukui K., Ito S., Ueno K., Yamaguchi S., Kyozuka J., Asami T.	New branching inhibitors and their potential as strigolactone mimics in rice.	Bioorg. Med. Chem. Lett.	21(16)	4905-8	2011		
34442	21521631	Sansenya S., Opassiri R., Kuaprasert B., Chen C.J., Cairns J.R.	The crystal structure of rice (Oryza sativa L.) Os4BGlu12, an oligosaccharide and tuberonic acid glucoside-hydrolyzing beta-glucosidase with significant thioglucohydrolase activity.	Arch. Biochem. Biophys.	510(1)	62-72	2011	BGLU12,BGLU7,BGLU6,BGLU10,BGLU11,BGLU24,BGLU26,BGLU27,BGLU28,BGLU29,BGLU35,BGLU37,BGLU8,BGLU9,BGLU30,BGLU13,BGLU31	Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os3bglu6, Os3BGlu6, 3BGlu6,Os4bglu10, Os4BGlu10,Os4bglu11, Os4BGlu11,Os6bglu24, Os6BGlu24,Os7bglu26, Os7BGlu26,Os8bglu27, OsBGlu27,Os8bglu28, OsBGlu28,Os9bglu29, OsBGlu29 ,Os11bglu35, OsBGlu35 ,Os11bglu37, OsBGlu37 ,Os3bglu8, Os3BGlu8 ,Os4bglu9, Os4BGlu9,Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2,OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13,Os9bglu31, Os9BGlu31 
34443	21554757	Fassetti F., Leone O., Palopoli L., Rombo S.E., Saiardi A.	IP6K gene identification in plant genomes by tag searching.	BMC Proc	5 Suppl 2	S1	2011	_	OsIPK2, IPK2, IP6K
34447	21423286	Fu J.D., Yan Y.F., Kim M.Y., Lee S.H., Lee B.W.	Population-specific quantitative trait loci mapping for functional stay-green trait in rice (Oryza sativa L.).	Genome	54(3)	235-43	2011		
34449	21417378	Hanashiro I., Higuchi T., Aihara S., Nakamura Y., Fujita N.	Structures of starches from rice mutants deficient in the starch synthase isozyme SSI or SSIIIa.	Biomacromolecules	12(5)	1621-8	2011		
34451	21505761	Li T., Zhang M., Qu Y., Ren Z., Zhang J., Guo Y., Heong K.L., Villareal B., Zhong Y., Ma E.	Population genetic structure and phylogeographical pattern of rice grasshopper, Oxya hyla intricata, across Southeast Asia.	Genetica	139(4)	511-24	2011		
34456	20821243	Ray S., Dansana P.K., Giri J., Deveshwar P., Arora R., Agarwal P., Khurana J.P., Kapoor S., Tyagi A.K.	Modulation of transcription factor and metabolic pathway genes in response to water-deficit stress in rice.	Funct. Integr. Genomics	11(1)	157-78	2011		
34475	21247905	Xu L., Henke M., Zhu J., Kurth W., Buck-Sorlin G.	A functional-structural model of rice linking quantitative genetic information with morphological development and physiological processes.	Ann. Bot.	107(5)	817-28	2011		
34479	21677384	Singh V.K., Upadhyay P., Sinha P., Mall A.K., Jaiswal S.K., Singh A., Ellur R.K., Biradar S., Sundaram R.M., Singh S., Ahmed I., Mishra B., Singh A.K., Kole C.	Determination of genetic relationships among elite thermosensitive genic male sterile lines (TGMS) of rice (Oryza sativa L.) employing morphological and simple sequence repeat (SSR) markers.	J. Genet.	90(1)	11-9	2011		
34483	21594293	Cao S., Xu W., Luo Y., He X., Yuan Y., Ran W., Liang L., Huang K.	Metabonomics study of transgenic Bacillus thuringiensis rice (T2A-1) meal in a 90-day dietary toxicity study in rats.	Mol Biosyst	7(7)	2304-10	2011		
34485	21528404	Mallikarjuna G., Mallikarjuna K., Reddy M.K., Kaul T.	Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.).	Biotechnol. Lett.	33(8)	1689-97	2011	DREB2A	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
34490	21416328	Yang X., Huang J., Wu Y., Wang J., Wang P., Wang X., Huete A.R.	Estimating biophysical parameters of rice with remote sensing data using support vector machines.	Sci China Life Sci	54(3)	272-81	2011		
34494	21459764	Miyao M., Masumoto C., Miyazawa S., Fukayama H.	Lessons from engineering a single-cell C(4) photosynthetic pathway into rice.	J. Exp. Bot.	62(9)	3021-9	2011		
34495	21444336	Mondrag?n-Palomino M., Trontin C.	High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots.	Ann. Bot.	107(9)	1533-44	2011	_,_,_,_,_,_,_,_,_,_,_,_,_,_,REP1,_,_,_,_,_,_,FC1,_	OsTCP10, OsSTA77, TCP10, STA77,OsTCP6, TCP6,OsTCP17, TCP17,PCF1, OsPCF1,OsPCF7, PCF7,OsTCP9, TCP9,OsTCP25, TCP25,OsTCP18, TCP18,OsTCP20, TCP20,OsTCP21, TCP21,OsTCP22, OsTCP15, TCP22, TCP15,OsTCP28, TCP28,PCF3, OsPCF3,OsTCP27, TCP27,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1,OsTCP5, TCP5,OsPCF5, PCF5,OsPCF8, PCF8,OsTCP19, TCP19,PCF2, OsPCF2,OsTCP7, CHE, TCP7,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,OsPCF6, PCF6
34511	21399992	Jiang W., Lee J., Jin Y.M., Qiao Y., Piao R., Jang S.M., Woo M.O., Kwon S.W., Liu X., Pan H.Y., Du X., Koh H.J.	Identification of QTLs for seed germination capability after various storage periods using two RIL populations in rice.	Mol. Cells	31(4)	385-92	2011		
34513	21763534	Cho K., Han Y., Woo J.C., Baudisch B., Kl?sgen RB., Oh S., Han J., Han O.	Cellular localization of dual positional specific maize lipoxygenase-1 in transgenic rice and calcium-mediated membrane association.	Plant Sci.	181(3)	242-8	2011		
34515	21477784	Hayashi-Tsugane M., Maekawa M., Qian Q., Kobayashi H., Iida S., Tsugane K.	A rice mutant displaying a heterochronically elongated internode carries a 100 kb deletion.	J Genet Genomics	38(3)	123-8	2011		
34516	21634036	Zhou Y.F., Zhang X.Y., Xue Q.Z.	Fine mapping and candidate gene prediction of the photoperiod and thermo-sensitive genic male sterile gene pms1(t) in rice.	J Zhejiang Univ Sci B	12(6)	436-47	2011	PMS1	pms1*(Pms1,pgms,ms1P), pms1*, Pms1, ms1-P, pms1(t)*, pms1(t)
34517	21132544	Muthurajan R., Shobbar Z.S., Jagadish S.V., Bruskiewich R., Ismail A., Leung H., Bennett J.	Physiological and proteomic responses of rice peduncles to drought stress.	Mol. Biotechnol.	48(2)	173-82	2011		
34524	21410711	Chen C.P., Frei M., Wissuwa M.	The OzT8 locus in rice protects leaf carbon assimilation rate and photosynthetic capacity under ozone stress.	Plant Cell Environ.	34(7)	1141-9	2011		
34526	21456058	Moon H.I., Lee J.H., Lee Y.C., Kim S.K.	Inhibitory Effects of Isolated Compounds from Black Coloured Rice Bran on the Complement Classical Pathway.	Phytother Res	25(9)	1418-20	2011		
34529	21295625	Bharathi Y., Vijaya Kumar S., Pasalu I.C., Balachandran S.M., Reddy V.D., Rao K.V.	Pyramided rice lines harbouring Allium sativum (asal) and Galanthus nivalis (gna) lectin genes impart enhanced resistance against major sap-sucking pests.	J. Biotechnol.	152(3)	63-71	2011		
34533	21423767	Guyot R., Garavito A., Gavory F., Samain S., Tohme J., Ghesqui?re A., Lorieux M.	Patterns of sequence divergence and evolution of the S orthologous regions between Asian and African cultivated rice species.	PLoS ONE	6(3)	e17726	2011		
34535	21631950	Tao D., Xu P., Zhou J., Deng X., Li J., Deng W., Yang J., Yang G., Li Q., Hu F.	Cytoplasm affects grain weight and filled-grain ratio in indica rice.	BMC Genet.	12	53	2011		
34536	21551283	Ikeda S., Okubo T., Takeda N., Banba M., Sasaki K., Imaizumi-Anraku H., Fujihara S., Ohwaki Y., Ohshima K., Fukuta Y., Eda S., Mitsui H., Hattori M., Sato T., Shinano T., Minamisawa K.	The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions.	Appl. Environ. Microbiol.	77(13)	4399-405	2011	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
34537	21453428	Ham J.H., Melanson R.A., Rush M.C.	Burkholderia glumae: next major pathogen of rice?	Mol. Plant Pathol.	12(4)	329-39	2011		
34541	21175644	Pan J., Cui K., Wei D., Huang J., Xiang J., Nie L.	Relationships of non-structural carbohydrates accumulation and translocation with yield formation in rice recombinant inbred lines under two nitrogen levels.	Physiol Plant	141(4)	321-31	2011		
34551	21780582	Liu H.J., Chen L.G., Zhu P.P., Sheng J., Zhang Y.F., Zheng J.C.	[Effect of hyacinth mulching on rice (Oryza sativa L.) uptake and utilization of nitrogen].	Huan Jing Ke Xue	32(5)	1292-8	2011		
34554	21061188	Swapna L., Khurana R., Kumar S.V., Tyagi A.K., Rao K.V.	Pollen-specific expression of Oryza sativa indica pollen allergen gene (OSIPA) promoter in rice and Arabidopsis transgenic systems.	Mol. Biotechnol.	48(1)	49-59	2011		
34555	21163697	Shinozaki Y., Kitamoto H.K.	Ethanol production from ensiled rice straw and whole-crop silage by the simultaneous enzymatic saccharification and fermentation process.	J. Biosci. Bioeng.	111(3)	320-5	2011		
34560	21323642	Morrone D., Hillwig M.L., Mead M.E., Lowry L., Fulton D.B., Peters R.J.	Evident and latent plasticity across the rice diterpene synthase family with potential implications for the evolution of diterpenoid metabolism in the cereals.	Biochem. J.	435(3)	589-95	2011		
34568	21460234	Yang X., Tan S.H., Teh Y.J., Yuan Y.A.	Structural implications into dsRNA binding and RNA silencing suppression by NS3 protein of Rice Hoja Blanca Tenuivirus.	RNA	17(5)	903-11	2011		
34572	21556691	Su C.F., Kuo I.C., Chen P.W., Huang C.H., Seow S.V., Chua K.Y., Yu S.M.	Characterization of an immunomodulatory Der p 2-FIP-fve fusion protein produced in transformed rice suspension cell culture.	Transgenic Res.	21(1)	177-92	2012		
34574	21448341	Yoshida T., Kimura E., Koike S., Nojima J., Futai E., Sasagawa N., Watanabe Y., Ishiura S.	Transgenic rice expressing amyloid beta-peptide for oral immunization.	Int. J. Biol. Sci.	7(3)	301-7	2011		
34577	21451246	Khattri A., Nandy S., Srivastava V.	Heat-inducible Cre-lox system for marker excision in transgenic rice.	J. Biosci.	36(1)	37-42	2011		
34582	21210840	Kang K., Kong K., Park S., Natsagdorj U., Kim Y.S., Back K.	Molecular cloning of a plant N-acetylserotonin methyltransferase and its expression characteristics in rice.	J. Pineal Res.	50(3)	304-9	2011		
34584	21494323	Qian D., Jiang L., Lu L., Wei C., Li Y.	Biochemical and structural properties of cyanases from Arabidopsis thaliana and Oryza sativa.	PLoS ONE	6(3)	e18300	2011		
34585	21520392	Kong C.H., Chen X.H., Hu F., Zhang S.Z.	Breeding of commercially acceptable allelopathic rice cultivars in China.	Pest Manag. Sci.	67(9)	1100-6	2011		
34587	21677691	Ishii S., Ohno H., Tsuboi M., Otsuka S., Senoo K.	Identification and isolation of active N(2)O reducers in rice paddy soil.	ISME J	5(12)	1936-45	2011		
34601	21113019	Li T., Li H., Zhang Y.X., Liu J.Y.	Identification and analysis of seven H?O?-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica).	Nucleic Acids Res.	39(7)	2821-33	2011	MIR812M,MIR812N,MIR1862G,MIR3981,MIR2873B,MIR3982	miR812m, osa-miR812m, osa-MIR812m,miR812n, osa-miR812n, osa-MIR812nosa-miR812n-3p osa-miR812n-5p,miR1862g, osa-miR1862g, osa-MIR1862g,miR3981, osa-miR3981, osa-MIR3981osa-miR3981-3p osa-miR3981-5p,miR2873b, osa-miR2873b, osa-MIR2873b,miR3982, osa-miR3982, osa-MIR3982osa-miR3982-3p osa-miR3982-5p
34603	21499832	Han M.J., Jung K.H., Yi G., An G.	Rice Importin beta1 gene affects pollen tube elongation.	Mol. Cells	31(6)	523-30	2011	IMPB1,_	Importin beta 1,OsImpbeta1, OsImp beta 1
34611	21416320	Wu J., Wang C., Du Z., Cai L., Hu M., Wu Z., Li Y., Xie L.	Identification of Pns12 as the second silencing suppressor of Rice gall dwarf virus.	Sci China Life Sci	54(3)	201-8	2011		
34612	21703279	Jingbo X., Silan Z., Feng S., Huijuan X., Xuehai H., Xiaohui N., Zhi L.	Using the concept of pseudo amino acid composition to predict resistance gene against Xanthomonas oryzae pv. oryzae in rice: an approach from chaos games representation.	J. Theor. Biol.	284(1)	16-23	2011		
34616	21213008	Mustafiz A., Singh A.K., Pareek A., Sopory S.K., Singla-Pareek SL.	Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses.	Funct. Integr. Genomics	11(2)	293-305	2011		
34627	21533550	Cho J.I., Kim H.B., Kim C.Y., Hahn T.R., Jeon J.S.	Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane.	Mol. Cells	31(6)	553-61	2011	RSUS5,RSUS4,RSUS1,RSUS3,RSUS2,RSUS6,RSUS7	SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,SUS6, SS6, OsScS6, RSs6, RSus6, OsSUS6,SUS7, SS7, OsScS7, RSs7, RSus7, OsSUS7
34633	21370396	Song X., Wang Z., Qiang S.	Agronomic performance of F1, F2 and F3 hybrids between weedy rice and transgenic glufosinate-resistant rice.	Pest Manag. Sci.	67(8)	921-31	2011		
34634	21481190	Al Atalah B., Fouquaert E., Vanderschaeghe D., Proost P., Balzarini J., Smith D.F., Roug? P., Lasanajak Y., Callewaert N., Van Damme EJ.	Expression analysis of the nucleocytoplasmic lectin 'Orysata' from rice in Pichia?pastoris.	FEBS J.	278(12)	2064-79	2011		
34637	21686154	Sinha D.K., Lakshmi M., Anuradha G., Rahman S.J., Siddiq E.A., Bentur J.S., Nair S.	Serine proteases-like genes in the asian rice gall midge show differential expression in compatible and incompatible interactions with rice.	Int J Mol Sci	12(5)	2842-52	2011		
34640	21526825	Ito R., Mori K., Hashimoto I., Nakano C., Sato T., Hoshino T.	Triterpene cyclases from Oryza sativa L.: cycloartenol, parkeol and achilleol B synthases.	Org. Lett.	13(10)	2678-81	2011		
34643	21633982	Tanaka J., Nakamura S., Tsuruma K., Shimazawa M., Shimoda H., Hara H.	Purple Rice (Oryza sativa L.) Extract and its Constituents Inhibit VEGF-induced Angiogenesis.	Phytother Res	26(2)	214-22	2012		
34644	21763536	Karthikeyan A., Pandian S.K., Ramesh M.	Agrobacterium-mediated transformation of leaf base derived callus tissues of popular indica rice (Oryza sativa L. sub sp. indica cv. ADT 43).	Plant Sci.	181(3)	258-68	2011		
34647	21607616	Ding C., You J., Wang S., Liu Z., Li G., Wang Q., Ding Y.	A proteomic approach to analyze nitrogen- and cytokinin-responsive proteins in rice roots.	Mol. Biol. Rep.	39(2)	1617-26	2012		
34658	21388921	Naeimi S., Kocsub? S., Antal Z., Okhovvat S.M., Javan-Nikkhah M., V?gv?lgyi C., Kredics L.	Strain-specific SCAR markers for the detection of Trichoderma harzianum AS12-2, a biological control agent against Rhizoctonia solani, the causal agent of rice sheath blight.	Acta. Biol. Hung.	62(1)	73-84	2011		
34661	21504892	Muyle A., Serres-Giardi L., Ressayre A., Escobar J., Gl?min S.	GC-Biased Gene Conversion and Selection Affect GC Content in the Oryza Genus (rice).	Mol. Biol. Evol.	28(9)	2695-706	2011		
34663	21677387	Shen B., Yu W.D., Du J.H., Fan Y.Y., Wu J.R., Zhuang J.Y.	Validation and dissection of quantitative trait loci for leaf traits in interval RM4923-RM402 on the short arm of rice chromosome 6.	J. Genet.	90(1)	39-44	2011		
34668	21558459	Yang R., Tang Q., Wang H., Zhang X., Pan G., Wang H., Tu J.	Analyses of two rice (Oryza sativa) cyclin-dependent kinase inhibitors and effects of transgenic expression of OsiICK6 on plant growth and development.	Ann. Bot.	107(7)	1087-101	2011	KRP3,KRP2,KRP5,CYCD4;1,CYCB2;2,CDKB2;1 ,CYCA2;1,KRP1,KRP4,CDC2-1,KRP6	OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1 ,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6
34671	21512221	Koide T., Ohnishi Y., Horinouchi S.	Characterization of recombinant beta-amylases from Oryza sativa.	Biosci. Biotechnol. Biochem.	75(4)	793-6	2011	_,BMY1,_,_,_,BMY10 ,BMY2,_,_,_	OsBamy4, Bamy4,,,,OsSTA201,,,OsBamy2, Bamy2,,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2
34681	21214879	Brauer E.K., Rochon A., Bi Y.M., Bozzo G.G., Rothstein S.J., Shelp B.J.	Reappraisal of nitrogen use efficiency in rice overexpressing glutamine synthetase1.	Physiol Plant	141(4)	361-72	2011		
34693	21474375	Watanabe M., Ichinose K., Sasano K., Ozaki Y., Tsuiki T., Hidaka H., Kanemoto S.	Effect of enzymatic treatment on sedimentation and flocculation abilities of solid particles in rice washing drainage and its relationship with protein profiles.	J. Biosci. Bioeng.	112(1)	67-70	2011		
34696	21385782	Torres Acosta JA., Fowke L.C., Wang H.	Analyses of phylogeny, evolution, conserved sequences and genome-wide expression of the ICK/KRP family of plant CDK inhibitors.	Ann. Bot.	107(7)	1141-57	2011	KRP7,KRP3,KRP2,KRP6,KRP1,KRP5,KRP4	Orysa;KRP7,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1 ,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6
34700	21554676	Deveshwar P., Bovill W.D., Sharma R., Able J.A., Kapoor S.	Analysis of anther transcriptomes to identify genes contributing to meiosis and male gametophyte development in rice.	BMC Plant Biol.	11	78	2011	PAIR2,PAIR3,SDS,RMC1,DMC1A,PAIR1,RAD21-4,MEL1	Pair2, OsPAIR2, OsASY1,,OsSDS, Orysa;SDS,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,Pair1,OsRad21-4, REC8, OsREC8, OsRAD21-4,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c 
34704	21394874	Yang Z., Chen H., Tang W., Hua H., Lin Y.	Development and characterisation of transgenic rice expressing two Bacillus thuringiensis genes.	Pest Manag. Sci.	67(4)	414-22	2011		
34706	21688039	Iqbal M.M., Nazir F., Ali S., Asif M.A., Zafar Y., Iqbal J., Ali G.M.	Over Expression of Rice chitinase Gene in Transgenic Peanut (Arachis hypogaea L.) Improves Resistance Against Leaf Spot.	Mol. Biotechnol.	50(2)	129-36	2012		
34712	21368906	Liu F., Conrad R.	Chemolithotrophic acetogenic H2/CO2 utilization in Italian rice field soil.	ISME J	5(9)	1526-39	2011		
34715	21741417	Sakamoto T., Hasunuma T., Hori Y., Yamada R., Kondo A.	Direct ethanol production from hemicellulosic materials of rice straw by use of an engineered yeast strain codisplaying three types of hemicellulolytic enzymes on the surface of xylose-utilizing Saccharomyces cerevisiae cells.	J. Biotechnol.	158(4)	203-10	2012		
34719	21701860	Takan J.P., Chipili J., Muthumeenakshi S., Talbot N.J., Manyasa E.O., Bandyopadhyay R., Sere Y., Nutsugah S.K., Talhinhas P., Hossain M., Brown A.E., Sreenivasaprasad S.	Magnaporthe oryzae Populations Adapted to Finger Millet and Rice Exhibit Distinctive Patterns of Genetic Diversity, Sexuality and Host Interaction.	Mol. Biotechnol.	50(2)	145-58	2012		
34720	21281657	Umate P.	Oxysterol binding proteins (OSBPs) and their encoding genes in Arabidopsis and rice.	Steroids	76(5)	524-9	2011		
34723	21565701	Koharudin L.M., Viscomi A.R., Montanini B., Kershaw M.J., Talbot N.J., Ottonello S., Gronenborn A.M.	Structure-function analysis of a CVNH-LysM lectin expressed during plant infection by the rice blast fungus Magnaporthe oryzae.	Structure	19(5)	662-74	2011		
34724	21040387	Shimizu T., Nakazono-Nagaoka E., Uehara-Ichiki T., Sasaya T., Omura T.	Targeting specific genes for RNA interference is crucial to the development of strong resistance to rice stripe virus.	Plant Biotechnol. J.	9(4)	503-12	2011		
34725	21525786	Chen C.J., Liu Q., Zhang Y.C., Qu L.H., Chen Y.Q., Gautheret D.	Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus.	RNA Biol	8(3)	538-47	2011	MIR2871A,MIR5145,MIR5146,MIR1863B,MIR5148A,MIR5148B,MIR5148C,MIR5149,MIR5151,MIR5154,MIR5155,MIR5156,MIR5157A,MIR5157B,MIR5158,MIR5160,MIR5161,MIR5162,MIR5153,MIR5144	miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p,miR5145, osa-miR5145, osa-MIR5145, MIR5145-5p,miR5146, osa-miR5146, osa-MIR5146, MIR5146-3p,miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p,miR5148a, osa-miR5148a, osa-MIR5148a, MIR5148a-3p,miR5148b, osa-miR5148b, osa-MIR5148b, MIR5148b-3p,miR5148c, osa-miR5148c, osa-MIR5148c, MIR5148c-3p,miR5149, osa-miR5149, osa-MIR5149, MIR5149-3p,miR5151, osa-miR5151, osa-MIR5151, MIR5151-5p,miR5154, osa-miR5154, osa-MIR5154, MIR5154-3p,miR5155, osa-miR5155, osa-MIR5155, MIR5155-5p,miR5156, osa-miR5156, osa-MIR5156, MIR5156-5p,miR5157a, osa-miR5157a, osa-MIR5157a, MIR5157a-5p, MIR5157a-3p,miR5157b, osa-miR5157b, osa-MIR5157b, MIR5157b-5p, MIR5157b-3p,miR5158, osa-miR5158, osa-MIR5158, MIR5158-3p,miR5160, osa-miR5160, osa-MIR5160, MIR5160-3p,miR5161, osa-miR5161, osa-MIR5161, MIR5161-3p,miR5162, osa-miR5162, osa-MIR5162, MIR5162-5p,miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p,miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p
34739	21725029	Tao Z., Kou Y., Liu H., Li X., Xiao J., Wang S.	OsWRKY45 alleles play different roles in abscisic acid signalling and salt stress tolerance but similar roles in drought and cold tolerance in rice.	J. Exp. Bot.	62(14)	4863-74	2011	_,RAB16D,NCED2,ABI5,DREB1B,WRKY45,DREB1A,_,NCED3,RAB16A	RD22, OsBURP03, OsBURP3,rab21, OsLEA26, Rab16D, OsRab16,OsNCED2, OsNced2, OsCCD4b, CCD4b,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsWRKY45,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
34741	21922807	Shi S.W., Li Y.E., Wan Y.F., Qin X.B., Gao Q.Z.	[Observation for CH4 and N2O emissions under different rates of nitrogen and phosphate fertilization in double rice fields].	Huan Jing Ke Xue	32(7)	1899-907	2011		
34743	21725856	Ray S., Kapoor S., Tyagi A.K.	Analysis of transcriptional and upstream regulatory sequence activity of two environmental stress-inducible genes, NBS-Str1 and BLEC-Str8, of rice.	Transgenic Res.	21(2)	351-66	2012		
34744	21750695	Redman R.S., Kim Y.O., Woodward C.J., Greer C., Espino L., Doty S.L., Rodriguez R.J.	Increased fitness of rice plants to abiotic stress via habitat adapted symbiosis: a strategy for mitigating impacts of climate change.	PLoS ONE	6(7)	e14823	2011		
34745	21802967	Wang J., Hou Q., Dong L., Liu Y., Liu C.	QM/MM studies on the glycosylation mechanism of rice BGlu1 beta-glucosidase.	J. Mol. Graph. Model.	30	148-52	2011		
34759	21869469	Bai X.F., Luo L.J., Yan W.H., Kovi M.R., Xing Y.Z.	Quantitative trait loci for rice yield-related traits using recombinant inbred lines derived from two diverse cultivars.	J. Genet.	90(2)	209-15	2011		
34765	21933130	Abe Y., Matsusita K., Komatu S., Iwasaki Y.	Identification of Heterotrimeric G Protein alpha and beta Subunits in Rice.	Protein Pept. Lett.	19(3)	277-81	2012		
34766	21887580	Sharma R., Tan F., Jung K.H., Sharma M.K., Peng Z., Ronald P.C.	Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice.	Plant Mol. Biol.	77(4-5)	391-406	2011		
34771	21949821	Ji X., Qian D., Wei C., Ye G., Zhang Z., Wu Z., Xie L., Li Y.	Movement protein Pns6 of rice dwarf phytoreovirus has both ATPase and RNA binding activities.	PLoS ONE	6(9)	e24986	2011		
34775	21930802	Li H.J., Li X.H., Xiao J.H., Wing R.A., Wang S.P.	Ortholog Alleles at Xa3/Xa26 Locus Confer Conserved Race-Specific Resistance against Xanthomonas oryzae in Rice.	Mol Plant	5(1)	281-90	2012	XA3,MRKd,MRKa,TRKF,TRKG,MRKc,TRKH,TRKI,TRKJ,_,TRKE	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,MRKd, RKd, TRKd,MRKa, RKa, TRKa,TRKf,TRKg,MRKc, RKc, TRKc,TRKh,TRKi,TRKj,RKb2,TRKe, Rke, NRKe, 9RKe 
34777	21977025	Himi E., Maekawa M., Noda K.	Differential expression of three flavanone 3-hydroxylase genes in grains and coleoptiles of wheat.	Int J Plant Genomics	2011	369460	2011	F3H1,_,ANS	OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H,FLS, 2-ODD15, Os2-ODD15, 2ODD15, Os2ODD15,ANS, OsANS1, ANS1, LDOX
34779	21912860	Choi M.S., Woo M.O., Koh E.B., Lee J., Ham T.H., Seo H.S., Koh H.J.	Teosinte Branched 1 modulates tillering in rice plants.	Plant Cell Rep.	31(1)	57-65	2012		
34780	21926092	Manavalan L.P., Chen X., Clarke J., Salmeron J., Nguyen H.T.	RNAi-mediated disruption of squalene synthase improves drought tolerance and yield in rice.	J. Exp. Bot.	63(1)	163-75	2012		
34783	21078052	Wakasa Y., Zhao H., Hirose S., Yamauchi D., Yamada Y., Yang L., Ohinata K., Yoshikawa M., Takaiwa F.	Antihypertensive activity of transgenic rice seed containing an 18-repeat novokinin peptide localized in the nucleolus of endosperm cells.	Plant Biotechnol. J.	9(7)	729-35	2011		
34784	21641919	Shang X.Y., Li J.J., Liu M.T., Li S., Liu Y., Wang Y.F., Huang X., Jin Z.L.	Cytotoxic steroids from Monascus purpureus-fermented rice.	Steroids	76(10-11)	1185-9	2011		
34786	21912852	Li W.J., Dai L.L., Chai Z.J., Yin Z.J., Qu L.Q.	Evaluation of seed storage protein gene 3'-untranslated regions in enhancing gene expression in transgenic rice seed.	Transgenic Res.	21(3)	545-53	2012		
34787	21926094	Zhang H., Li H., Yuan L., Wang Z., Yang J., Zhang J.	Post-anthesis alternate wetting and moderate soil drying enhances activities of key enzymes in sucrose-to-starch conversion in inferior spikelets of rice.	J. Exp. Bot.	63(1)	215-27	2012		
34788	21114612	Mito T., Seki M., Shinozaki K., Ohme-Takagi M., Matsui K.	Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice.	Plant Biotechnol. J.	9(7)	736-46	2011		
34792	21911595	Iwamoto M., Kiyota S., Hanada A., Yamaguchi S., Takano M.	The multiple contributions of phytochromes to the control of internode elongation in rice.	Plant Physiol.	157(3)	1187-95	2011		
34794	21978604	Ray M., Mishra P., Das P., Sabat S.C.	Expression and purification of soluble bio-active rice plant Catalase-A from recombinant Escherichia coli.	J. Biotechnol.	157(1)	12-9	2012		
34795	21847023	Yuka K., Kitano H., Yoshiaki I.	Molecular mechanism of crown root initiation and the different mechanisms between crown root and radicle in rice.	Plant Signal Behav	6(9)	1270-8	2011		
34803	22021418	Mathur S., Vyas S., Kapoor S., Tyagi A.K.	The Mediator Complex in Plants: Structure, Phylogeny, and Expression Profiling of Representative Genes in a Dicot (Arabidopsis) and a Monocot (Rice) during Reproduction and Abiotic Stress.	Plant Physiol.	157(4)	1609-27	2011		
34804	22078375	Cui M., Zhang W., Zhang Q., Xu Z., Zhu Z., Duan F., Wu R.	Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice.	Plant Physiol. Biochem.	49(12)	1384-91	2011		
34805	21978282	Semsang N., Kawaree R., Cutler R.W., Chundet R., Yu L.D., Anuntalabhochai S.	Improved antioxidant activity of BKOS Thai jasmine rice.	Nat. Prod. Res.	26(12)	1145-51	2012		
34806	21996937	Bhattacharyya J., Chowdhury A.H., Ray S., Jha J.K., Das S., Gayen S., Chakraborty A., Mitra J., Maiti M.K., Basu A., Sen S.K.	Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants.	Plant Cell Rep.	31(2)	271-9	2012	_,SLR1	Ubi1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
34810	21984727	Qi J., Zhou G., Yang L., Erb M., Lu Y., Sun X., Cheng J., Lou Y.	The Chloroplast-Localized Phospholipases D alpha4 and alpha5 Regulate Herbivore-Induced Direct and Indirect Defenses in Rice.	Plant Physiol.	157(4)	1987-99	2011	MSRMK2,PLDeta2,PLDalpha2,PLDalpha5,PLDalpha6,HPL3,PLDalpha4,PLDALPHA3,ACS2,PLDalpha1,_,MAPK6	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsPLDeta2,OsPLDalpha2,OsPLDalpha5, RPLD4, OsPLDeta3,OsPLDalpha6, OsPLDeta1, OsPLDmu,OsHPL3, CYP74B2,OsPLDalpha4, RPLD3, OsPLDeta2,OsPLDalpha3, RPLD2, PLDalpha3, OsPLDeta1, PLD2,OsACS2, Os-ACS2,RPLD1, PLD1, OsPLDalpha1,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6
34815	22086537	Ma B., Gao L., Zhang H., Cui J., Shen Z.	Aluminum-induced oxidative stress and changes in antioxidant defenses in the roots of rice varieties differing in Al tolerance.	Plant Cell Rep.	31(4)	687-96	2012		
34819	22092531	Endo M., Nakayama S., Umeda-Hara C., Ohtsuki N., Saika H., Umeda M., Toki S.	CDKB2 is involved in mitosis and DNA damage response in rice.	Plant J.	69(6)	967-77	2012		
34821	22065257	Chi W.C., Fu S.F., Huang T.L., Chen Y.A., Chen C.C., Huang H.J.	Identification of transcriptome profiles and signaling pathways for the allelochemical juglone in rice roots.	Plant Mol. Biol.	77(6)	591-607	2011		
34829	22113591	Shirasawa S., Endo T., Nakagomi K., Yamaguchi M., Nishio T.	Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, 'Lijiangxintuanheigu', in rice, Oryza sativa L.	Theor. Appl. Genet.	124(5)	937-46	2012		
34832	21737747	Chen G., Komatsuda T., Ma J.F., Nawrath C., Pourkheirandish M., Tagiri A., Hu Y.G., Sameri M., Li X., Zhao X., Liu Y., Li C., Ma X., Wang A., Nair S., Wang N., Miyao A., Sakuma S., Yamaji N., Zheng X., Nevo E.	An ATP-binding cassette subfamily G full transporter is essential for the retention of leaf water in both wild barley and rice.	Proc. Natl. Acad. Sci. U.S.A.	108(30)	12354-9	2011	PDR6	OsPDR6, OsABCG31, OsABCG31_1
34834	21593600	Kagale S., Marimuthu T., Kagale J., Thayumanavan B., Samiyappan R.	Induction of systemic resistance in rice by leaf extracts of Zizyphus jujuba and Ipomoea carnea against Rhizoctonia solani.	Plant Signal Behav	6(7)	919-23	2011		
34836	21792744	Chauhan H., Khurana N., Agarwal P., Khurana P.	Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.	Mol. Genet. Genomics	286(2)	171-87	2011	SPL7,HSFA1,HSFA2E,HSFA5,HSFB2A,HSFB4D,HSFB4A,HSFB4C,HSFB2B,HSFA3,HSFA2B,HSFA4A,HSFB1,HSFA2C,HSFB2C,HSFA6,HSFA7,HSFA9,HSFB4B,HSFC1A,HSFC1B,HSFC2A,HSFC2B,HSFA2D,HSFA2A	spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsHsfA1, HSFA1, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfA2e, OsHsfA2e, OsHsf-12, HSF12, OsHsfA2a, HsfA2a,HSfA5, OsHsfA5, OsHsf-06, HSF06,HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14,OsHsfB4d, HSfB4d, OsHsf-10, HSF10,HSfB4a, OsHsfB4a, OsHsf-20, HSF20,HSfB4c, OsHsfB4c, OsHsf-22, HSF22,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21,HSfA3, OsHsfA3, OsHsf-07, HSF07,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, HSF5, OsHSF5,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, HSF9, OsHsfA4b, OsHSF9,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1 ,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, HSF6, OsHsfA6a, HsfA6a ,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,HSfA6, OsHsfA6, OsHsf-17, HSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsEnS-9, OsHsfA7a, HsfA7a ,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, HSF8, OsHsfA8, HsfA8 ,HSFB4b, OsHSFB4b, OsHsf-19, rHsf12, OsHSF12, HSF12, HSF19,HSfC1a, OsHsfC1a, OsHsf-02, rHsf13, HSF02, HSF13,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, HSF11,  rHsf11,HSfC2a, OsHsfC2a, OsHsf-05, HSF05,HSfC2b, OsHsfC2b, OsHsf-16, HSF16,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b ,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e 
34839	21726237	Liu Q., Yuan M., Zhou Y., Li X., Xiao J., Wang S.	A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice.	Plant Cell Environ.	34(11)	1958-69	2011	SWEET13	OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25
34846	21300551	Hao Z., Wang L., He Y., Liang J., Tao R.	Expression of defense genes and activities of antioxidant enzymes in rice resistance to rice stripe virus and small brown planthopper.	Plant Physiol. Biochem.	49(7)	744-51	2011		
34849	21352959	Wani S.H., Sanghera G.S., Gosal S.S.	An efficient and reproducible method for regeneration of whole plants from mature seeds of a high yielding Indica rice (Oryza sativa L.) variety PAU 201.	N Biotechnol	28(4)	418-22	2011		
34853	21805338	Yan S., Zou G., Li S., Wang H., Liu H., Zhai G., Guo P., Song H., Yan C., Tao Y.	seed size is determined by the combinations of the genes controlling different seed characteristics in rice.	Theor. Appl. Genet.	123(7)	1173-81	2011		
34857	21800099	Sato K., Kawamura A., Obara T., Kawai S., Kajita S., Kitano H., Katayama Y.	Isolation of rice dwarf mutants with ectopic deposition of phenolic components including lignin in parenchyma cell walls of internodes.	Plant Cell Rep.	30(12)	2195-205	2011		
34858	21806801	Coudert Y., B?s M., Le T.V., Pr? M., Guiderdoni E., Gantet P.	Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.	BMC Genomics	12	387	2011	SAUR9,_,_,_,_,HOX21,_,_,_,SAUR12,CRL1,_,IAA24,IAA11,MADS51,IAA14,_,PRR95	OsSAUR9,ZOS8-11,GIL1,GTE4, OsGTE4,MAP,Oshox21, OsHox21,BTBN18,FSM, FAS1,SAD2,OsSAUR12,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsTLP13, OsTLP4,OsIAA24,OsIAA11,OsMADS51, OsMADS65, MADS65,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsSERL5, OsBAK1-4, SERK1,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33
34862	21777252	Ptashnyk M., Roose T., Jones D.L., Kirk G.J.	Enhanced zinc uptake by rice through phytosiderophore secretion: a modelling study.	Plant Cell Environ.	34(12)	2038-46	2011		
34864	21788375	Takahashi H., Saika H., Matsumura H., Nagamura Y., Tsutsumi N., Nishizawa N.K., Nakazono M.	Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence.	Ann. Bot.	108(2)	253-61	2011	_,_,EXPB17,EXPB11,CYCB2;1,EXPA1,CYCB2;2,CDKB2;1 ,ADH1	,,OsEXPB17,OsEXPB11, osaEXPb1.20,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,Adh1, Adh1/2, adh1/adh2, OsADH1
34865	21844309	Hancock C.N., Zhang F., Floyd K., Richardson A.O., Lafayette P., Tucker D., Wessler S.R., Parrott W.A.	The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean.	Plant Physiol.	157(2)	552-62	2011		
34869	21778827	Yadav D.K., Tuteja N.	Rice G-protein coupled receptor (GPCR): in silico analysis and transcription regulation under abiotic stress.	Plant Signal Behav	6(8)	1079-86	2011	_	OsGPCR, GPCR
34872	21832284	Liu F., Chang X.J., Ye Y., Xie W.B., Wu P., Lian X.M.	Comprehensive sequence and whole-life-cycle expression profile analysis of the phosphate transporter gene family in rice.	Mol Plant	4(6)	1105-22	2011	PT7,PT24,PT3,PT26,PT21,PT12,PT20,PT25,PT19,PT4,PT15,PT18,PT23,PT11,PT14,PT10,PT9,PT8,PT6,PT1,PT2,PT22,PT5,PT16,PT17,PT13	OsPT7, PHT1-7, OsPht1;7,OsPT24,OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPT26,OsPT21,OsPT12, PHT1-12, OsPht1;12,OsSTA235, OsPT20,OsPT25,OsPT19,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT15,OsPT18,OsPT23,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsPT14,OsPT10, PHT1-10, OsPht1;10,OsPT9, PHT1-9, OsPht1;9,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPT22,OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsPT16,OsPT17,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13
34874	21856794	Fan C., Walling J.G., Zhang J., Hirsch C.D., Jiang J., Wing R.A.	Conservation and purifying selection of transcribed genes located in a rice centromere.	Plant Cell	23(8)	2821-30	2011	_,_,_,_,_,_,_,_,_,_,_,_,CENH3,_	Cen8.t00849,Cen8.t01003, OsPABPC2, PABPC2,Cen8.t00802,Cen8.t00849,Cen8.t01009,OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I,Cen8.t00808,Cen8.t00833,OsCBSX1, Cen8.t00941,Cen8.t00960,Cen8.t01152,Cen8.t01153,CENH3, CenH3,Cen8.t00793
34875	21810995	Dreni L., Pilatone A., Yun D., Erreni S., Pajoro A., Caporali E., Zhang D., Kater M.M.	Functional analysis of all AGAMOUS subfamily members in rice reveals their roles in reproductive organ identity determination and meristem determinacy.	Plant Cell	23(8)	2850-63	2011	MADS21,MADS13,MADS58,RAG	OsMADS21, RMADS207,OsMADS13, MAF1, RMADS206,OsMADS58,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1
34878	21880076	Kobayashi T., Itai R.N., Aung M.S., Senoura T., Nakanishi H., Nishizawa N.K.	The rice transcription factor IDEF1 directly binds to iron and other divalent metals for sensing cellular iron status.	Plant J.	69(1)	81-91	2012	IDEF1	OsLFL2, LFL2, OsIDEF1
34880	21880933	Osugi A., Itoh H., Ikeda-Kawakatsu K., Takano M., Izawa T.	Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice.	Plant Physiol.	157(3)	1128-37	2011		
34882	21914668	Lestari P., Lee G., Ham T.H., Reflinur, Woo M.O., Piao R., Jiang W., Chu S.H., Lee J., Koh H.J.	Single nucleotide polymorphisms and haplotype diversity in rice sucrose synthase 3.	J. Hered.	102(6)	735-46			
34883	21924254	Jin Y., Luo Q., Tong H., Wang A., Cheng Z., Tang J., Li D., Zhao X., Li X., Wan J., Jiao Y., Chu C., Zhu L.	An AT-hook gene is required for palea formation and floral organ number control in rice.	Dev. Biol.	359(2)	277-88	2011	REP1,DP1	OsTCP24, REP1, TCP24, SDP1, SDP1/REP1,dp1, pa, DP1/PAL1, PAL1
34884	21298364	Salunkhe A.S., Poornima R., Prince K.S., Kanagaraj P., Sheeba J.A., Amudha K., Suji K.K., Senthil A., Babu R.C.	Fine mapping QTL for drought resistance traits in rice (Oryza sativa L.) using bulk segregant analysis.	Mol. Biotechnol.	49(1)	90-5	2011		
34890	21951138	Ogawa S., Suzuki Y., Yoshizawa R., Kanno K., Makino A.	Effect of individual suppression of RBCS multigene family on Rubisco contents in rice leaves.	Plant Cell Environ.	35(3)	546-53	2012		
34892	22057998	Liu B., Li J.Q., Liu X.D., Shahid M.Q., Shi L.G., Lu Y.G.	Identification of neutral genes at pollen sterility loci Sd and Se of cultivated rice (Oryza sativa) with wild rice (O. rufipogon) origin.	Genet. Mol. Res.	10(4)	3435-45	2011		
34895	21973320	Song X., Li P., Zhai J., Zhou M., Ma L., Liu B., Jeong D.H., Nakano M., Cao S., Liu C., Chu C., Wang X.J., Green P.J., Meyers B.C., Cao X.	Roles of DCL4 and DCL3b in rice phased small RNA biogenesis.	Plant J.	69(3)	462-74	2012	DCL1,DCL3B,DCL3A,SHO1	Dcl1, OsDCL1, osDCL1, Os-DCL1,OsDCL3b,OsDCL3a,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
34900	22038450	Jiang S.Y., Bhalla R., Ramamoorthy R., Luan H.F., Venkatesh P.N., Cai M., Ramachandran S.	Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants.	Transgenic Res.	21(4)	785-95	2012		
34901	21984008	Kim K.H., Alam I., Kim Y.G., Sharmin S.A., Lee K.W., Lee S.H., Lee B.H.	Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue.	Biotechnol. Lett.	34(2)	371-7	2012		
34902	21988523	Ben Saad R., Fabre D., Mieulet D., Meynard D., Dingkuhn M., Al-Doss A., Guiderdoni E., Hassairi A.	Expression of the Aeluropus littoralis AlSAP gene in rice confers broad tolerance to abiotic stresses through maintenance of photosynthesis.	Plant Cell Environ.	35(3)	626-43	2012	APX1,_,HKT1,DREB1B,SODCC1,SOS1,P5CS,DREB1A	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsProT, ProT, OsProT2, ProT2,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsSOS1, OsNHA1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
34903	21921696	Bashir K., Ishimaru Y., Nishizawa N.K.	Identification and characterization of the major mitochondrial Fe transporter in rice.	Plant Signal Behav	6(10)	1591-3	2011		
34907	22099517	Tsuda H.	Generation of poly-beta-hydroxybutyrate from externally provided acetate in rice root.	Plant Physiol. Biochem.	50(1)	35-43	2012		
34909	21232645	Liu Y.T., Luo Z.Y., Long C.N., Wang H.D., Long M.N., Hu Z.	Cellulase production in a new mutant strain of Penicillium decumbens ML-017 by solid state fermentation with rice bran.	N Biotechnol	28(6)	733-7	2011		
34910	22024734	Sultana S., Khew C.Y., Morshed M.M., Namasivayam P., Napis S., Ho C.L.	Overexpression of monodehydroascorbate reductase from a mangrove plant (AeMDHAR) confers salt tolerance on rice.	J. Plant Physiol.	169(3)	311-8	2012		
34911	22111585	Yi J., Kim S.R., Lee D.Y., Moon S., Lee Y.S., Jung K.H., Hwang I., An G.	The rice gene, DEFECTIVE TAPETUM AND MEIOCYTES 1 (DTM1), is required for early tapetum development and meiosis.	Plant J.	70(2)	256-70	2012	MEL1,PSS1,OSC4,CP1,_,PAIR1,UDT1,OSC6,DTM1,MSP1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,pss1, OsPSS1,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,OsCP1, Os CP1,Osg1, g1,Pair1,Udt1, bHLH164, OsUDT1, OsbHLH164 ,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsDTM1,Msp1, OsMSP1
34912	22080374	Jiang W., Jin Y.M., Lee J., Lee K.I., Piao R., Han L., Shin J.C., Jin R.D., Cao T., Pan H.Y., Du X., Koh H.J.	Quantitative trait loci for cold tolerance of rice recombinant inbred lines in low temperature environments.	Mol. Cells	32(6)	579-87	2011		
34913	22080597	Wu Y., Kikuchi S., Yan H., Zhang W., Rosenbaum H., Iniguez A.L., Jiang J.	Euchromatic Subdomains in Rice Centromeres Are Associated with Genes and Transcription.	Plant Cell	23(11)	4054-64	2011	CENH3	CENH3, CenH3
34915	21132530	Cao Y., Lou Y., Han Y., Shi J., Wang Y., Wang W., Ming F.	Al toxicity leads to enhanced cell division and changed photosynthesis in Oryza rufipogon L.	Mol. Biol. Rep.	38(8)	4839-46	2011		
34916	22105913	Marzougui S., Sugimoto K., Yamanouchi U., Shimono M., Hoshino T., Hori K., Kobayashi M., Ishiyama K., Yano M.	Mapping and characterization of seed dormancy QTLs using chromosome segment substitution lines in rice.	Theor. Appl. Genet.	124(5)	893-902	2012		
34918	22048639	Myint K.K., Fujita D., Matsumura M., Sonoda T., Yoshimura A., Yasui H.	Mapping and pyramiding of two major genes for resistance to the brown planthopper (Nilaparvata lugens [St?l]) in the rice cultivar ADR52.	Theor. Appl. Genet.	124(3)	495-504	2012		
34921	22134723	Han S.H., Sakuraba Y., Koh H.J., Paek N.C.	Leaf variegation in the rice zebra2 mutant is caused by photoperiodic accumulation of tetra-cis-lycopene and singlet oxygen.	Mol. Cells	33(1)	87-97	2012		
34922	22110044	Zhang W., Wu Y., Schnable J.C., Zeng Z., Freeling M., Crawford G.E., Jiang J.	High-resolution mapping of open chromatin in the rice genome.	Genome Res.	22(1)	151-62	2012		
34928	22118877	Wakabayashi K., Soga K., Hoson T.	Phenylalanine ammonia-lyase and cell wall peroxidase are cooperatively involved in the extensive formation of ferulate network in cell walls of developing rice shoots.	J. Plant Physiol.	169(3)	262-7	2012	POX5.1,POX22.3,POXGX9,POX8.1,POX3006,PAL1	POX5.1, prx113, POX5,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,POXgX9, OsPOXgX9, prx112,POX8.1, prx110, POX8,POX3006, prx114, PO-C1, POC-1, POC1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1
34930	21765177	Gao L.L., Xue H.W.	Global Analysis of Expression Profiles of Rice Receptor-Like Kinase Genes.	Mol Plant	5(1)	143-53	2012		
34931	21779386	Ghaffar M.B., Pritchard J., Ford-Lloyd B.	Brown planthopper (N. lugens Stal) feeding behaviour on rice germplasm as an indicator of resistance.	PLoS ONE	6(7)	e22137	2011		
34932	21760901	Ito S., Umehara M., Hanada A., Kitahata N., Hayase H., Yamaguchi S., Asami T.	Effects of triazole derivatives on strigolactone levels and growth retardation in rice.	PLoS ONE	6(7)	e21723	2011		
34933	21744228	Fujino K., Iwata N.	Selection for low-temperature germinability on the short arm of chromosome 3 in rice cultivars adapted to Hokkaido, Japan.	Theor. Appl. Genet.	123(7)	1089-97	2011		
34934	21792631	Zhang H., Zhang C.Q., Sun Z.Z., Yu W., Gu M.H., Liu Q.Q., Li Y.S.	A major locus qS12, located in a duplicated segment of chromosome 12, causes spikelet sterility in an indica-japonica rice hybrid.	Theor. Appl. Genet.	123(7)	1247-56	2011		
34935	21789706	Shibaya T., Nonoue Y., Ono N., Yamanouchi U., Hori K., Yano M.	Genetic interactions involved in the inhibition of heading by heading date QTL, Hd2 in rice under long-day conditions.	Theor. Appl. Genet.	123(7)	1133-43	2011	HD16,HD2,SE1,HD5,GHD7	Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
34937	21966570	Lira-Ruan V., Ruiz-Kubli M., Arredondo-Peter R.	Expression of non-symbiotic hemoglobin 1 and 2 genes in rice (Oryza sativa) embryonic organs.	Commun Integr Biol	4(4)	457-8	2011	Hb4,Hb3,Hb1,Hb2,Hb5	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4,HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,OsHB5, HB5, OsPgb1.5, Pgb1.5
34939	21668602	Kudahettige N.P., Pucciariello C., Parlanti S., Alpi A., Perata P.	Regulatory interplay of the Sub1A and CIPK15 pathways in the regulation of alpha-amylase production in flooded rice plants.	Plant Biol (Stuttg)	13(4)	611-9	2011		
34941	21784949	Li H., Liang W., Hu Y., Zhu L., Yin C., Xu J., Dreni L., Kater M.M., Zhang D.	Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.	Plant Cell	23(7)	2536-52	2011	MADS58,MADS24,SPW1,MFO1,RAG,MADS13,DL,MADS7	OsMADS58,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,SPW1, spw1, MADS16, OsMADS16,OsMADS6, MADS6, OsMFO1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsMADS13, MAF1, RMADS206,DL, dl(lop), lop, dl, dl1,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
34942	21793697	Wang B., Jiang L., Zhang Y., Zhang W., Wang Q., Liu S., Liu Y., Cheng X., Zhai H., Wan J.	Genetic dissection of the resistance to Rice stripe virus present in the indica rice cultivar 'IR24'.	Genome	54(8)	611-9	2011	STVB	Stvb(St2), St2, Stvb, Stv2
34943	21792227	Koide Y., Shinya Y., Ikenaga M., Sawamura N., Matsubara K., Onishi K., Kanazawa A., Sano Y.	Complex genetic nature of sex-independent transmission ratio distortion in Asian rice species: the involvement of unlinked modifiers and sex-specific mechanisms.	Heredity	108(3)	242-7	2012	S6	
34944	21730357	Fujita N., Satoh R., Hayashi A., Kodama M., Itoh R., Aihara S., Nakamura Y.	Starch biosynthesis in rice endosperm requires the presence of either Starch synthase I or IIIa.	J. Exp. Bot.	62(14)	4819-31	2011	FLO5,SSI	OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1
34951	21930100	Zhang B., Tian F., Tan L., Xie D., Sun C.	Characterization of a novel high-tillering dwarf 3 mutant in rice.	J Genet Genomics	38(9)	411-8	2011		
34952	21960163	Shen Y., Zhang Y., Yang C., Lan Y., Liu L., Liu S., Chen Z., Ren G., Wan J.	Mutation of OsALDH7 causes a yellow-colored endosperm associated with accumulation of oryzamutaic acid A in rice.	Planta	235(2)	433-41	2012		
34953	21937483	Kumagai E., Araki T., Hamaoka N., Ueno O.	Ammonia emission from rice leaves in relation to photorespiration and genotypic differences in glutamine synthetase activity.	Ann. Bot.	108(7)	1381-6	2011		
34960	21852757	Feng H., Fan X., Yan M., Liu X., Miller A.J., Xu G.	Multiple roles of nitrate transport accessory protein NAR2 in plants.	Plant Signal Behav	6(9)	1286-9	2011	NRT2.1,NRT2.4,NRT2.3,NAR2.1,NAR2.2,NRT2.2	OsNRT2.1, OsNRT2.2,OsNRT2.4,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.1, OsNRT3.1A,OsNAR2.2, OsNRT3.1B,OsNRT2.2, OsNRT2.1
34961	21971746	Khurana N., Chauhan H., Khurana P.	Expression analysis of a heat-inducible, Myo-inositol-1-phosphate synthase (MIPS) gene from wheat and the alternatively spliced variants of rice and Arabidopsis.	Plant Cell Rep.	31(1)	237-51	2012		
34962	22043312	Lee S., Jia Y., Jia M., Gealy D.R., Olsen K.M., Caicedo A.L.	Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA.	PLoS ONE	6(10)	e26260	2011	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
34965	22078377	Pons R., Cornejo M.J., Sanz A.	Differential salinity-induced variations in the activity of H?-pumps and Na?/H? antiporters that are involved in cytoplasm ion homeostasis as a function of genotype and tolerance level in rice cell lines.	Plant Physiol. Biochem.	49(12)	1399-409	2011		
34969	22038433	Qiu Y., Guo J., Jing S., Zhu L., He G.	Development and characterization of japonica rice lines carrying the brown planthopper-resistance genes BPH12 and BPH6.	Theor. Appl. Genet.	124(3)	485-94	2012	BPH12,BPH6	bph12,Bph6
34970	21984651	Han X., Wang Y., Liu X., Jiang L., Ren Y., Liu F., Peng C., Li J., Jin X., Wu F., Wang J., Guo X., Zhang X., Cheng Z., Wan J.	The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in rice.	J. Exp. Bot.	63(1)	121-30	2012		
34971	21338466	Jacobs A., Ford K., Kretschmer J., Tester M.	Rice plants expressing the moss sodium pumping ATPase PpENA1 maintain greater biomass production under salt stress.	Plant Biotechnol. J.	9(8)	838-47	2011		
34972	22020279	Gibbs D.J., Lee S.C., Isa N.M., Gramuglia S., Fukao T., Bassel G.W., Correia C.S., Corbineau F., Theodoulou F.L., Bailey-Serres J., Holdsworth M.J.	Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.	Nature	479(7373)	415-8	2011	SUB1C,SUB1A	Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
34974	22131052	Zhang C.C., Yuan W.Y., Zhang Q.F.	RPL1, a Gene Involved in Epigenetic Processes Regulates Phenotypic Plasticity in Rice.	Mol Plant	5(2)	482-93	2012	RR6,GID1,RR5,D61,GA2OX1,RPL1,SLR1,CPS1,GA20OX1	OsRR6, rr6, Rra6, OsRRA6,gid1, OsGID1, Thl, Os GID1,rr5, OsRR5, Rra4, OsRRA4,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1
34975	22174619	Yang L., Chen J., Xu T., Qiu W., Zhang Y., Zhang L., Xu F., Liu H.	Rice protein extracted by different methods affects cholesterol metabolism in rats due to its lower digestibility.	Int J Mol Sci	12(11)	7594-608	2011		
34978	22017194	Barding G.A., Fukao T., B?ni S., Bailey-Serres J., Larive C.K.	Differential Metabolic Regulation Governed by the Rice SUB1A Gene during Submergence Stress and Identification of Alanylglycine by (1)H NMR Spectroscopy.	J. Proteome Res.	11(1)	320-30	2012		
34980	21739353	Takakura Y., Oka N., Suzuki J., Tsukamoto H., Ishida Y.	Intercellular Production of Tamavidin 1, a biotin-binding protein from Tamogitake Mushroom, Confers Resistance to the Blast Fungus Magnaporthe oryzae in Transgenic Rice.	Mol. Biotechnol.	51(1)	9-17	2012		
34983	21600393	Luo X., Wu S., Tian F., Xin X., Zha X., Dong X., Fu Y., Wang X., Yang J., Sun C.	Identification of heterotic loci associated with yield-related traits in Chinese common wild rice (Oryza rufipogon Griff.).	Plant Sci.	181(1)	14-22	2011		
34987	21931853	Yang D., Fan T., Zhou H., Ding J., Zhang D.	Biogenic hierarchical TiO?/SiO? derived from rice husk and enhanced photocatalytic properties for dye degradation.	PLoS ONE	6(9)	e24788	2011		
34990	21921697	Ishimaru Y., Bashir K., Nakanishi H., Nishizawa N.K.	The role of rice phenolics efflux transporter in solubilizing apoplasmic iron.	Plant Signal Behav	6(10)	1624-6	2011		
34992	21829379	Li C., Wang Y., Liu L., Hu Y., Zhang F., Mergen S., Wang G., Schl?ppi MR., Chu C.	A rice plastidial nucleotide sugar epimerase is involved in galactolipid biosynthesis and improves photosynthetic efficiency.	PLoS Genet.	7(7)	e1002196	2011	WX1,_,_,_,_,_,_,_,_,_,_,GPT1,_,GPT2,_,SSI,RSUS1,SBE1,UGP1,AGPL2	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsUGE2,OsUGE3,OsUGE4,PHD1,OsUGE1, OsUGE-1, UGE1, UGE-1,,GalM4,GalK2,GalT,BTI-1,OsGPT1,OSINV1, OsINV1, INV1, OsCIN7, OsCIN8,OsGPT2,OSINV3, OsINV3, INV3, OsVIN2, VIN2, VINV,OsSSI, SSS 1, SSS1, SS1,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,Ugp1, OsUgp1, UGP2, UGP3,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
34995	21769472	Gan Q., Li D., Liu G., Zhu L.	Identification of Potential Antisense Transcripts in Rice Using Conventional Microarray.	Mol. Biotechnol.	51(1)	37-43	2012		
35002	21605341	Huang Q.N., Shi Y.F., Yang Y., Feng B.H., Wei Y.L., Chen J., Baraoidan M., Leung H., Wu J.L.	Characterization and genetic analysis of a light- and temperature-sensitive spotted-leaf mutant in rice.	J Integr Plant Biol	53(8)	671-81	2011	SPL30	spl30(t)
35009	21811828	Xu M., Li L., Fan Y., Wan J., Wang L.	ZmCBF3 overexpression improves tolerance to abiotic stress in transgenic rice (Oryza sativa) without yield penalty.	Plant Cell Rep.	30(10)	1949-57	2011		
35015	21879323	Hwang S.G., Kim D.S., Jang C.S.	Comparative analysis of evolutionary dynamics of genes encoding leucine-rich repeat receptor-like kinase between rice and Arabidopsis.	Genetica	139(8)	1023-32	2011		
35018	21824678	Saito M., Yoshida M.	Expression analysis of the gene family associated with raffinose accumulation in rice seedlings under cold stress.	J. Plant Physiol.	168(18)	2268-71	2011		
35019	21790181	Huff G.S., Doncheva I.S., Brinkley D.W., Angeles-Boza AM., Mukherjee A., Cramer C.J., Roth J.P.	Experimental and computational investigations of oxygen reactivity in a heme and tyrosyl radical-containing fatty acid alpha-(di)oxygenase.	Biochemistry	50(34)	7375-89	2011	_	PIOX, RalphaO
35022	21829395	Famoso A.N., Zhao K., Clark R.T., Tung C.W., Wright M.H., Bustamante C., Kochian L.V., McCouch S.R.	Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.	PLoS Genet.	7(8)	e1002221	2011	NRAMP4,STAR2,ART1	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,OsSTAR2, OsSATR2,ART1, STAR3
35023	21801300	Shin Y.J., Chong Y.J., Yang M.S., Kwon T.H.	Production of recombinant human granulocyte macrophage-colony stimulating factor in rice cell suspension culture with a human-like N-glycan structure.	Plant Biotechnol. J.	9(9)	1109-19	2011		
35024	22133686	Li J., Wang D., Xie Y., Zhang H., Hu G., Li J., Dai A., Liu L., Li Z.	Development of upland rice introgression lines and identification of QTLs for basal root thickness under different water regimes.	J Genet Genomics	38(11)	547-56	2011		
35025	21884550	Park S., Lee K., Kim Y.S., Back K.	Tryptamine 5-hydroxylase-deficient Sekiguchi rice induces synthesis of 5-hydroxytryptophan and N-acetyltryptamine but decreases melatonin biosynthesis during senescence process of detached leaves.	J. Pineal Res.	52(2)	211-6	2012		
35027	21901484	Peng H., Feng Y., Zhu X., Lan X., Tang M., Wang J., Dong H., Chen B.	MoDUO1, a Duo1-like gene, is required for full virulence of the rice blast fungus Magnaporthe oryzae.	Curr. Genet.	57(6)	409-20	2011		
35030	21954158	Wang G., Sun X., Wang G., Wang F., Gao Q., Sun X., Tang Y., Chang C., Lai J., Zhu L., Xu Z., Song R.	Opaque7 encodes an acyl-activating enzyme-like protein that affects storage protein synthesis in maize endosperm.	Genetics	189(4)	1281-95	2011	_	OsAAE3, AAE3, OsOCS, OCS 
35035	21284800	Peleg Z., Reguera M., Tumimbang E., Walia H., Blumwald E.	Cytokinin-mediated source/sink modifications improve drought tolerance and increase grain yield in rice under water-stress.	Plant Biotechnol. J.	9(7)	747-58	2011		
35051	21984925	Malone B.M., Tan F., Bridges S.M., Peng Z.	Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data.	PLoS ONE	6(9)	e25260	2011		
35056	21274659	Akbudak M.A., Srivastava V.	Improved FLP recombinase, FLPe, efficiently removes marker gene from transgene locus developed by Cre-lox mediated site-specific gene integration in rice.	Mol. Biotechnol.	49(1)	82-9	2011		
35059	21848656	Yamori W., Sakata N., Suzuki Y., Shikanai T., Makino A.	Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice.	Plant J.	68(6)	966-76	2011	CRR6	OsCRR6
35060	22039121	Wakasa Y., Hirano K., Urisu A., Matsuda T., Takaiwa F.	Generation of transgenic rice lines with reduced contents of multiple potential allergens using a null mutant in combination with an RNA silencing method.	Plant Cell Physiol.	52(12)	2190-9	2011		
35065	22016430	Campo S., Peris-Peris C., Montesinos L., Pe?as G., Messeguer J., San Segundo B.	Expression of the maize ZmGF14-6 gene in rice confers tolerance to drought stress while enhancing susceptibility to pathogen infection.	J. Exp. Bot.	63(2)	983-99	2012		
35071	22089543	Keong B.P., Harikrishna J.A.	Genome Characterization of a Breeding Line Derived from a Cross Between Oryza sativa and Oryza rufipogon.	Biochem. Genet.	50(1-2)	135-45	2012		
35073	22107880	Duan G., Kamiya T., Ishikawa S., Arao T., Fujiwara T.	Expressing ScACR3 in Rice Enhanced Arsenite Efflux and Reduced Arsenic Accumulation in rice grains.	Plant Cell Physiol.	53(1)	154-63	2012		
35074	21951842	Wen B.Q., Xing M.Q., Zhang H., Dai C., Xue H.W.	Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.	J Integr Plant Biol	53(11)	869-78	2011		
35075	22084198	Dash S., Van Hemert J., Hong L., Wise R.P., Dickerson J.A.	PLEXdb: gene expression resources for plants and plant pathogens.	Nucleic Acids Res.	40(Database issue)	D1194-201	2012		
35082	22076247	Kwon J.Y., Lee K.H., Cheon S.H., Ryu H.N., Kim S.J., Kim D.I.	Adsorptive loss of secreted recombinant proteins in transgenic rice cell suspension cultures.	Plant Cell Rep.	31(3)	551-60	2012		
35089	22055918	Suzuki K., Yang L., Takaiwa F.	Transgenic rice accumulating modified cedar pollen allergen Cry j 2 derivatives.	J. Biosci. Bioeng.	113(2)	249-51	2012		
35091	22108719	Shigemitsu T., Ozaki S., Saito Y., Kuroda M., Morita S., Satoh S., Masumura T.	Production of human growth hormone in transgenic rice seeds: co-introduction of RNA interference cassette for suppressing the gene expression of endogenous storage proteins.	Plant Cell Rep.	31(3)	539-49	2012		
35092	22000797	Jo Y., Hyun T.K.	Genome-wide identification of antioxidant component biosynthetic enzymes: comprehensive analysis of ascorbic acid and tocochromanols biosynthetic genes in rice.	Comput Biol Chem	35(5)	261-8	2011		
35094	21922808	Zhang Q.W., Du C.X., Li X.W., Li G.C., Wang M.	[Nitrogen uptake rate and use efficiency by rice under different levels of the controlled-release N fertilizers (CRF) in the Nansi Lake basin].	Huan Jing Ke Xue	32(7)	1908-15	2011		
35097	21751161	Ashkani S., Rafii M.Y., Sariah M., Siti Nor Akmar A., Rusli I., Abdul Rahim H., Latif M.A.	Analysis of simple sequence repeat markers linked with blast disease resistance genes in a segregating population of rice (Oryza sativa).	Genet. Mol. Res.	10(3)	1345-55	2011		
35099	21791436	Butardo V.M., Fitzgerald M.A., Bird A.R., Gidley M.J., Flanagan B.M., Larroque O., Resurreccion A.P., Laidlaw H.K., Jobling S.A., Morell M.K., Rahman S.	Impact of down-regulation of starch branching enzyme IIb in rice by artificial microRNA- and hairpin RNA-mediated RNA silencing.	J. Exp. Bot.	62(14)	4927-41	2011	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
35101	21803813	Suzuki K., Ohmori Y., Ratel E.	High root temperature blocks both linear and cyclic electron transport in the dark during chilling of the leaves of rice seedlings.	Plant Cell Physiol.	52(9)	1697-707	2011		
35104	21726058	Xie J.K., Kong X.L., Chen J., Hu B.L., Wen P., Zhuang J.Y., Bao J.S.	Mapping of quantitative trait loci for fiber and lignin contents from an interspecific cross Oryza sativa~Oryza rufipogon.	J Zhejiang Univ Sci B	12(7)	518-26	2011		
35106	21835275	Chernov V.M., Chernova O.A., Medvedeva E.S., Mouzykantov A.A., Ponomareva A.A., Shaymardanova G.F., Gorshkov O.V., Trushin M.V.	Unadapted and adapted to starvation Acholeplasma laidlawii cells induce different responses of Oryza sativa, as determined by proteome analysis.	J Proteomics	74(12)	2920-36	2011		
35112	21850595	Suzuki G., Wada H., Goto H., Nakano A., Oba H., Deno T., Rahman S., Mukai Y.	Transgenic rice plants harboring the grain hardness-locus region of Aegilops tauschii.	Plant Cell Rep.	30(12)	2293-301	2011		
35114	21859960	Zhang Y.M., Yan Y.S., Wang L.N., Yang K., Xiao N., Liu Y.F., Fu Y.P., Sun Z.X., Fang R.X., Chen X.Y.	A Novel Rice Gene, NRR Responds to Macronutrient Deficiency and Regulates Root Growth.	Mol Plant	5(1)	63-72	2012	_	OsNRR, NRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, Os CRCT
35115	21807692	Kato Y., Okami M.	Root morphology, hydraulic conductivity and plant water relations of high-yielding rice grown under aerobic conditions.	Ann. Bot.	108(3)	575-83	2011		
35118	21883233	Jamil M., Rodenburg J., Charnikhova T., Bouwmeester H.J.	Pre-attachment Striga hermonthica resistance of New Rice for Africa (NERICA) cultivars based on low strigolactone production.	New Phytol.	192(4)	964-75	2011		
35126	21894467	Uga Y., Hanzawa E., Nagai S., Sasaki K., Yano M., Sato T.	Identification of qSOR1, a major rice QTL involved in soil-surface rooting in paddy fields.	Theor. Appl. Genet.	124(1)	75-86	2012		
35133	21848845	Yang X.Y., Yang J.L., Zhou Y., Pi?eros MA., Kochian L.V., Li G.X., Zheng S.J.	A de novo synthesis citrate transporter, Vigna umbellata multidrug and toxic compound extrusion, implicates in Al-activated citrate efflux in rice bean (Vigna umbellata) root apex.	Plant Cell Environ.	34(12)	2138-48	2011		
35142	22028913	Li S., Xiong R., Wang X., Zhou Y.	Five proteins of Laodelphax striatellus are potentially involved in the interactions between rice stripe virus and vector.	PLoS ONE	6(10)	e26585	2011		
35144	22072914	Hsuan H.M., Salleh B., Zakaria L.	Molecular Identification of Fusarium Species in Gibberella fujikuroi Species Complex from Rice, Sugarcane and Maize from Peninsular Malaysia.	Int J Mol Sci	12(10)	6722-32	2011		
35145	22153234	Kiyota S., Xie X., Takano M.	phytochromes A and C cooperatively regulate early and transient gene expression after red-light irradiation in rice seedlings.	Plant Physiol. Biochem.	51	10-7	2012		
35147	22021420	Phung T.H., Jung H.I., Park J.H., Kim J.G., Back K., Jung S.	Porphyrin Biosynthesis Control under Water Stress: Sustained Porphyrin Status Correlates with drought tolerance in Transgenic Rice.	Plant Physiol.	157(4)	1746-64	2011		
35150	21985968	Wu Y., Hillwig M.L., Wang Q., Peters R.J.	Parsing a multifunctional biosynthetic gene cluster from rice: Biochemical characterization of CYP71Z6 & 7.	FEBS Lett.	585(21)	3446-51	2011	CYP71Z6,CYP71Z7	Oscyp71Z6,Oscyp71Z7
35153	21980143	Jiao B.B., Wang J.J., Zhu X.D., Zeng L.J., Li Q., He Z.H.	A Novel Protein RLS1 with NB-ARM Domains Is Involved in Chloroplast Degradation during leaf senescence in Rice.	Mol Plant	5(1)	205-17	2012	_	RLS1, LRD43
35161	21912213	Wang S.J., Kang C.H., Chen H.W.	Effect of the interaction between light and touch stimuli on inducing curling seminal roots in rice seedlings.	Plant Signal Behav	6(10)	1434-5	2011		
35164	22071266	Kim H., Hwang H., Hong J.W., Lee Y.N., Ahn I.P., Yoon I.S., Yoo S.D., Lee S., Lee S.C., Kim B.G.	A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.	J. Exp. Bot.	63(2)	1013-24	2012	_,_,_,_,_,_,ABI5,_,_,_,_,DHN1,SAPK2,RAB16A,_,_,_,_,_,_,LEA3-1	OsEnS-89, OsPYL13, PYL13,OsPYL7, PYL7, OsPYL12,OsPYL12, PYL12, OsPYL11, PYL11,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPP2C49, PP2C49, OsPP76,OsPP2C30, PP2C30, OsPP48, PP48,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsSAPK2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
35165	22113535	Marazzi G., Cacciotti L., Pelliccia F., Iaia L., Volterrani M., Caminiti G., Sposato B., Massaro R., Grieco F., Rosano G.	Long-term effects of nutraceuticals (berberine, red yeast rice, policosanol) in elderly hypercholesterolemic patients.	Adv Ther	28(12)	1105-13	2011		
35167	22132208	Mukhopadhyay P., Reddy M.K., Singla-Pareek SL., Sopory S.K.	Transcriptional Downregulation of Rice rpL32 Gene under Abiotic Stress Is Associated with Removal of Transcription Factors within the Promoter Region.	PLoS ONE	6(11)	e28058	2011	_,_,_,_	rpL32_9.2,rpL32_8.1,rpL32_9.1,rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32
35168	22044963	Kouzai Y., Mochizuki S., Saito A., Ando A., Minami E., Nishizawa Y.	Expression of a bacterial chitosanase in rice plants improves disease resistance to the rice blast fungus Magnaporthe oryzae.	Plant Cell Rep.	31(4)	629-36	2012		
35174	22134721	Park H.M., Choi M.S., Kwak D.Y., Lee B.C., Lee J.H., Kim M.K., Kim Y.G., Shin D.B., Park S.K., Kim Y.H.	Suppression of NS3 and MP is important for the stable inheritance of RNAi-mediated Rice Stripe Virus (RSV) resistance obtained by targeting the fully complementary RSV-CP gene.	Mol. Cells	33(1)	43-51	2012		
35175	22067109	Takahashi R., Ishimaru Y., Nakanishi H., Nishizawa N.K.	Role of the iron transporter OsNRAMP1 in cadmium uptake and accumulation in rice.	Plant Signal Behav	6(11)		2011	IRT1,IRT2,NRAMP1	OsIRT1,OsIRT2, OsIRT1,OsNramp1, OsNRAMP1, OsNramp6
35179	22173308	Xu X., Han Y., Wu G., Cai W., Yuan B., Wang H., Liu F., Wang M., Hua H.	Field evaluation of effects of transgenic cry1Ab/cry1Ac, cry1C and cry2A rice on Cnaphalocrocis medinalis and its arthropod predators.	Sci China Life Sci	54(11)	1019-28	2011		
35184	22124893	Rupwate S.D., Rajasekharan R.	C2 domain is responsible for targeting rice phosphoinositide specific phospholipase C.	Plant Mol. Biol.	78(3)	247-58	2012		
35185	22081040	Asp T., Byrne S., Gundlach H., Bruggmann R., Mayer K.F., Andersen J.R., Xu M., Greve M., Lenk I., L?bberstedt T.	Comparative sequence analysis of VRN1 alleles of Lolium perenne with the co-linear regions in barley, wheat, and rice.	Mol. Genet. Genomics	286(5-6)	433-47	2011		
35193	22008150	Vikram P., Swamy B.M., Dixit S., Ahmed H.U., Teresa Sta Cruz M., Singh A.K., Kumar A.	qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds.	BMC Genet.	12	89	2011		
35195	22174442	Greenway H., Kulichikhin K.Y., Cawthray G.R., Colmer T.D.	pH regulation in anoxic rice coleoptiles at pH 3.5: biochemical pHstats and net H+ influx in the absence and presence of NOFormula.	J. Exp. Bot.	63(5)	1969-83	2012		
35197	22138855	Liu J., Zhang F., Zhou J., Chen F., Wang B., Xie X.	Phytochrome B control of total leaf area and stomatal density affects drought tolerance in rice.	Plant Mol. Biol.	78(3)	289-300	2012		
35198	22145600	Zhu L., Gu M., Meng X., Cheung S.C., Yu H., Huang J., Sun Y., Shi Y., Liu Q.	High-amylose rice improves indices of animal health in normal and diabetic rats.	Plant Biotechnol. J.	10(3)	353-62	2012		
35199	22209166	Zhang C., Yin Y., Zhang A., Lu Q., Wen X., Zhu Z., Zhang L., Lu C.	Comparative proteomic study reveals dynamic proteome changes between superhybrid rice LYP9 and its parents at different developmental stages.	J. Plant Physiol.	169(4)	387-98	2012		
35201	22132759	Ferse I., Langlitz M., Kleigrewe K., Rzeppa S., Lenczyk M., Harrer H., Cramer B., Humpf H.U.	Isolation and structure elucidation of two new cytotoxic metabolites from red yeast rice.	Nat. Prod. Res.	26(20)	1914-21	2012		
35202	22200664	Ye N., Zhu G., Liu Y., Zhang A., Li Y., Liu R., Shi L., Jia L., Zhang J.	Ascorbic acid and reactive oxygen species are involved in the inhibition of seed germination by abscisic acid in rice seeds.	J. Exp. Bot.	63(5)	1809-22	2012		
35203	22196402	Tian L., Tan L., Liu F., Cai H., Sun C.	Identification of quantitative trait loci associated with salt tolerance at seedling stage from Oryza rufipogon.	J Genet Genomics	38(12)	593-601	2011		
35207	22203474	Li X., Sun L., Tan L., Liu F., Zhu Z., Fu Y., Sun X., Sun X., Xie D., Sun C.	TH1, a DUF640 domain-like gene controls lemma and palea development in rice.	Plant Mol. Biol.	78(4-5)	351-9	2012	BLS1	OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
35208	22164211	Zhang P., Li J., Li X., Liu X., Zhao X., Lu Y.	Population structure and genetic diversity in a rice core collection (Oryza sativa L.) investigated with SSR markers.	PLoS ONE	6(12)	e27565	2011		
35209	22188265	Kyndt T., Nahar K., Haegeman A., De Vleesschauwer D., H?fte M., Gheysen G.	Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice.	Plant Biol (Stuttg)	14 Suppl 1	73-82	2012		
35213	22268146	Niessen M., Krause K., Horst I., Staebler N., Klaus S., Gaertner S., Kebeish R., Araujo W.L., Fernie A.R., Peterhansel C.	Two alanine aminotranferases link mitochondrial glycolate oxidation to the major photorespiratory pathway in Arabidopsis and rice.	J. Exp. Bot.	63(7)	2705-16	2012		
35215	22261864	Zhou Y., Yuan Y., Yuan F., Wang M., Zhong H., Gu M., Liang G.	RNAi-directed down-regulation of RSV results in increased resistance in rice (Oryza sativa L.).	Biotechnol. Lett.	34(5)	965-72	2012		
35220	22270358	Hamada H., Kurusu T., Okuma E., Nokajima H., Kiyoduka M., Koyano T., Sugiyama Y., Okada K., Koga J., Saji H., Miyao A., Hirochika H., Yamane H., Murata Y., Kuchitsu K.	Regulation of a Proteinaceous Elicitor-induced Ca2+ Influx and Production of Phytoalexins by a Putative Voltage-gated Cation Channel, OsTPC1, in Cultured Rice Cells.	J. Biol. Chem.	287(13)	9931-9	2012		
35221	22267486	Mentlak T.A., Kombrink A., Shinya T., Ryder L.S., Otomo I., Saitoh H., Terauchi R., Nishizawa Y., Shibuya N., Thomma B.P., Talbot N.J.	Effector-mediated suppression of chitin-triggered immunity by magnaporthe oryzae is necessary for rice blast disease.	Plant Cell	24(1)	322-35	2012	CEBiP	CEBIP, Os-LYP1, LYP1, OsCEBiP
35224	22168839	Washida H., Sugino A., Doroshenk K.A., Satoh-Cruz M., Nagamine A., Katsube-Tanaka T., Ogawa M., Kumamaru T., Satoh H., Okita T.W.	RNA targeting to a specific ER sub-domain is required for efficient transport and packaging of alpha-globulins to the protein storage vacuole in developing rice endosperm.	Plant J.	70(3)	471-9	2012		
35228	22306743	Zhang Q., Zhang W., Lin C., Xu X., Shen Z.	Expression of an Acidothermus cellulolyticus endoglucanase in transgenic rice seeds.	Protein Expr. Purif.	82(2)	279-83	2012		
35229	22500165	Ichitani K., Takemoto Y., Iiyama K., Taura S., Sato M.	Chromosomal Location of HCA1 and HCA2, Hybrid Chlorosis Genes in Rice.	Int J Plant Genomics	2012	649081	2012		
35231	22136623	Sui P., Jin J., Ye S., Mu C., Gao J., Feng H., Shen W.H., Yu Y., Dong A.	H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice.	Plant J.	70(2)	340-7	2012	BU1,D61,D11,SDG725	ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsSDG725, OsSET8, ASHH2
35233	22489119	Yao Y., Cheng X.Z., Wang L.X., Wang S.H., Ren G.	Major Phenolic Compounds, Antioxidant Capacity and Antidiabetic Potential of Rice Bean (Vigna umbellata L.) in China.	Int J Mol Sci	13(3)	2707-16	2012		
35235	22236520	Wang Y.D., Wang X., Wong Y.S.	Proteomics analysis reveals multiple regulatory mechanisms in response to selenium in rice.	J Proteomics	75(6)	1849-66	2012		
35237	22218673	Li C., Wei J., Lin Y., Chen H.	Gene silencing using the recessive rice bacterial blight resistance gene xa13 as a new paradigm in plant breeding.	Plant Cell Rep.	31(5)	851-62	2012		
35239	22215564	Cao S., He X., Xu W., Luo Y., Yuan Y., Liu P., Cao B., Shi H., Huang K.	Safety assessment of transgenic Bacillus thuringiensis rice T1c-19 in Sprague-Dawley rats from metabonomics and bacterial profile perspectives.	IUBMB Life	64(3)	242-50	2012		
35241	22313362	Xin Z., Yu Z., Erb M., Turlings T.C., Wang B., Qi J., Liu S., Lou Y.	The broad-leaf herbicide 2,4-dichlorophenoxyacetic acid turns rice into a living trap for a major insect pest and a parasitic wasp.	New Phytol.	194(2)	498-510	2012		
35247	22350764	Mosa K.A., Kumar K., Chhikara S., McDermott J., Liu Z., Musante C., White J.C., Dhankher O.P.	Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants.	Transgenic Res.	21(6)	1265-77	2012	PIP2;4,PIP2;6,PIP2;7	OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP2;6, PIP2-6, OsPIP2-5,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6
35248	22312119	Swamy B.P., Kaladhar K., Shobha Rani N., Prasad G.S., Viraktamath B.C., Reddy G.A., Sarla N.	QTL Analysis for Grain Quality Traits in 2 BC2F2 Populations Derived from Crosses between Oryza sativa cv Swarna and 2 Accessions of O. nivara.	J. Hered.	103(3)	442-52	2012		
35250	22382063	Wu B., Han Z.M., Li Z.X., Xing Y.Z.	[Discovery of QTLs increasing yield related traits in common wild rice].	Yi Chuan	34(2)	215-22	2012		
35257	22325886	Cho K., Kim Y.C., Woo J.C., Rakwal R., Agrawal G.K., Yoeun S., Han O.	Transgenic expression of dual positional maize lipoxygenase-1 leads to the regulation of defense-related signaling molecules and activation of the antioxidative enzyme system in rice.	Plant Sci.	185-186	238-45	2012		
35265	22403030	Peng H., Chun J., Ai T.B., Tong Y.A., Zhang R., Zhao M.M., Chen F., Wang S.H.	MicroRNA profiles and their control of male gametophyte development in rice.	Plant Mol. Biol.	80(1)	85-102	2012		
35267	22443148	Busconi M., Rossi D., Lorenzoni C., Baldi G., Fogher C.	Spread of herbicide-resistant weedy rice (red rice, Oryza sativa L.) after 5?years of Clearfield rice cultivation in Italy.	Plant Biol (Stuttg)	14	751-759	2012		
35268	22443363	Abbruscato P., Nepusz T., Mizzi L., Del Corvo M., Morandini P., Fumasoni I., Michel C., Paccanaro A., Guiderdoni E., Schaffrath U., Morel J.B., Piffanelli P., Faivre-Rampant O.	OsWRKY22, a monocot WRKY gene, plays a role in the resistance response to blast.	Mol. Plant Pathol.	13(8)	828-41	2012		
35269	22445751	Yadavalli V., Neelam S., Rao A.S., Reddy A.R., Subramanyam R.	Differential degradation of photosystem I subunits under iron deficiency in rice.	J. Plant Physiol.	169(8)	753-9	2012		
35271	22487175	Todoroki Y., Naiki K., Muramatsu T., Ohnishi T., Ueno K., Mizutani M., Hirai N.	A conformationally restricted uniconazole analogue as a specific inhibitor of rice ent-kaurene oxidase, CYP701A6.	Bioorg. Med. Chem. Lett.	22(9)	3240-3	2012		
35274	22499179	Utsunomiya Y., Samejima C., Fujisawa Y., Kato H., Iwasaki Y.	Rice transgenic plants with suppressed expression of the beta subunit of the heterotrimeric G protein.	Plant Signal Behav	7(4)	443-6	2012		
35276	22345644	Kavitha P.G., Miller A.J., Mathew M.K., Maathuis F.J.	Rice cultivars with differing salt tolerance contain similar cation channels in their root cells.	J. Exp. Bot.	63(8)	3289-96	2012		
35279	22385556	Datta K., Baisakh N., Ganguly M., Krishnan S., Yamaguchi Shinozaki K., Datta S.K.	Overexpression of Arabidopsis and Rice stress genes' inducible transcription factor confers drought and salinity tolerance to rice.	Plant Biotechnol. J.	10(5)	579-86	2012		
35283	22156226	Miyao A., Nakagome M., Ohnuma T., Yamagata H., Kanamori H., Katayose Y., Takahashi A., Matsumoto T., Hirochika H.	Molecular spectrum of somaclonal variation in regenerated rice revealed by whole-genome sequencing.	Plant Cell Physiol.	53(1)	256-64	2012		
35284	22199373	Park Y.I., Do K.H., Kim I.S., Park H.H.	Structural and functional studies of casein kinase I-like protein from rice.	Plant Cell Physiol.	53(2)	304-11	2012		
35290	22112460	Onda Y., Kawagoe Y.	Oxidative protein folding: selective pressure for prolamin evolution in rice.	Plant Signal Behav	6(12)	1966-72	2011		
35291	21959793	Wongpanya R., Boonyalai N., Thammachuchourat N., Horata N., Arikit S., Myint K.M., Vanavichit A., Choowongkomon K.	Biochemical and enzymatic study of rice BADH wild-type and mutants: an insight into fragrance in rice.	Protein J.	30(8)	529-38	2011		
35293	22194018	Mishra P., Bhoomika K., Dubey R.S.	Differential responses of antioxidative defense system to prolonged salinity stress in salt-tolerant and salt-sensitive Indica rice (Oryza sativa L.) seedlings.	Protoplasma	250(1)	3-19	2013		
35295	22458437	Tuyen le Q., Liu Y., Jiang L., Wang B., Wang Q., Hanh T.T., Wan J.	Identification of quantitative trait loci associated with small brown planthopper (Laodelphax striatellus Fall?n) resistance in rice (Oryza sativa L.).	Hereditas	149(1)	16-23	2012		
35298	22189605	Sujatha K., Natarajkumar P., Laha G.S., Mishra B., Rao K.S., Viraktamath B.C., Kirti P.B., Hari Y., Balachandran S.M., Rajendrakumar P., Ram T., Hajira S.K., Madhav M.S., Neeraja C.N., Sundaram R.M.	Inheritance of bacterial blight resistance in the rice cultivar Ajaya and high-resolution mapping of a major QTL associated with resistance.	Genet Res (Camb)	93(6)	397-408	2011		
35299	22137606	Ji K., Wang Y., Sun W., Lou Q., Mei H., Shen S., Chen H.	Drought-responsive mechanisms in rice genotypes with contrasting drought tolerance during reproductive stage.	J. Plant Physiol.	169(4)	336-44	2012		
35302	22101345	Itoh H., Izawa T.	A study of phytohormone biosynthetic gene expression using a circadian clock-related mutant in rice.	Plant Signal Behav	6(12)	1932-6	2011		
35304	22150231	Xu M., Galhano R., Wiemann P., Bueno E., Tiernan M., Wu W., Chung I.M., Gershenzon J., Tudzynski B., Sesma A., Peters R.J.	Genetic evidence for natural product-mediated plant-plant allelopathy in rice (Oryza sativa).	New Phytol.	193(3)	570-5	2012		
35306	22161313	Sun H., Huang X., Xu X., Lan H., Huang J., Zhang H.S.	ENAC1, a NAC Transcription Factor, is an Early and Transient Response Regulator Induced by Abiotic Stress in Rice (Oryza sativa L.).	Mol. Biotechnol.	52(2)	101-10	2012		
35307	22187088	Hou M., Xu W., Bai H., Liu Y., Li L., Liu L., Liu B., Liu G.	Characteristic expression of rice pathogenesis-related proteins in rice leaves during interactions with Xanthomonas oryzae pv. oryzae.	Plant Cell Rep.	31(5)	895-904	2012		
35315	22359609	Liu C., Li J., Gao J., Shen Z., Lu B.R., Lin C.	A built-in mechanism to mitigate the spread of insect-resistance and herbicide-tolerance transgenes into weedy rice populations.	PLoS ONE	7(2)	e31625	2012		
35318	22368182	Wang H.W., Hwang S.G., Karuppanapandian T., Liu A., Kim W., Jang C.S.	Insight into the Molecular Evolution of Non-Specific Lipid Transfer Proteins via Comparative Analysis Between Rice and Sorghum.	DNA Res.	19(2)	179-94	2012	LTP1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Ltp1, RLTP1,OsLTP1.4, OsLtpI.4,OsLTP1.9, OsLtpI.9,,OsLTP1.12, OsLtpI.12,OsLTP1.15, OsLtpI.15,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18,OsLTPd8, OsLtpV.4, PI,OsLTP1.8, OsLtpI.8,OsLTP1.2, OsLtpI.2,OsLTP1.6, OsLtpI.6,OsLTP1.7, OsLtpI.7,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14,OsLTP1.3, OsLtpI.3,OsLTP1.1, T42, OsLtp1.1, LTP1.1,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLTP1.16, OsLtpI.16,OsLTPd6, OsLtpV.2,OsLTPd5, LTPd5,OsLTP1.13, OsLtpI.13,OsLTP1.19, OsLtpI.19,OsLTP1.14, OsLtpI.14
35322	22268496	Xu C., Cheng Z., Yu W.	Construction of rice mini-chromosomes by Telomere-mediated chromosomal truncation.	Plant J.	70(6)	1070-9	2012		
35323	22266099	Miyamoto K., Shimizu T., Lin F., Sainsbury F., Thuenemann E., Lomonossoff G., Nojiri H., Yamane H., Okada K.	Identification of an E-box motif responsible for the expression of jasmonic acid-induced chitinase gene OsChia4a in rice.	J. Plant Physiol.	169(6)	621-7	2012		
35325	22457828	Li J., Chu H., Zhang Y., Mou T., Wu C., Zhang Q., Xu J.	The Rice HGW gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates heading date and grain weight.	PLoS ONE	7(3)	e34231	2012	HGW	HGW
35326	22218926	Ji Q., Zhang M., Lu J., Wang H., Lin B., Liu Q., Chao Q., Zhang Y., Liu C., Gu M., Xu M.	Molecular basis underlying the S5-dependent reproductive isolation and compatibility of indica/japonica rice hybrids.	Plant Physiol.	158(3)	1319-28	2012		
35327	22239707	Badawi A.M., Fahmy A.A., Mohamed K.A., Noor El-Din MR., Riad M.G.	Enhancement of ethanol production by simultaneous saccharification and fermentation (SSF) of rice straw using ethoxylated span 20.	Prep. Biochem. Biotechnol.	42(1)	44-59	2012		
35329	22118621	Siahpoosh M.R., Sanchez D.H., Schlereth A., Scofield G.N., Furbank R.T., van Dongen JT., Kopka J.	Modification of OsSUT1 gene expression modulates the salt response of rice Oryza sativa cv. Taipei 309.	Plant Sci.	182	101-11	2012		
35330	22284568	Baisakh N., Ramanarao M.V., Rajasekaran K., Subudhi P., Janda J., Galbraith D., Vanier C., Pereira A.	Enhanced salt stress tolerance of rice plants expressing a vacuolar H(+) -ATPase subunit c1 (SaVHAc1) gene from the halophyte grass Spartina alterniflora L?isel.	Plant Biotechnol. J.	10(4)	453-464	2012		
35332	22448240	He M., Kershaw M.J., Soanes D.M., Xia Y., Talbot N.J.	Infection-Associated Nuclear Degeneration in the Rice Blast Fungus Magnaporthe oryzae Requires Non-Selective Macro-Autophagy.	PLoS ONE	7(3)	e33270	2012		
35339	22378952	Yang L., Hirose S., Suzuki K., Hiroi T., Takaiwa F.	Expression of hypoallergenic Der f 2 derivatives with altered intramolecular disulphide bonds induces the formation of novel ER-derived protein bodies in transgenic rice seeds.	J. Exp. Bot.	63(8)	2947-59	2012		
35343	22353574	De Vleesschauwer D., Van Buyten E., Satoh K., Balidion J., Mauleon R., Choi I.R., Vera-Cruz C., Kikuchi S., H?fte M.	Brassinosteroids antagonize gibberellin- and salicylate-mediated root immunity in rice.	Plant Physiol.	158(4)	1833-46	2012		
35346	22321318	Suzuki Y., Fujimori T., Kanno K., Sasaki A., Ohashi Y., Makino A.	Metabolome analysis of photosynthesis and the related primary metabolites in the leaves of transgenic rice plants with increased or decreased Rubisco content.	Plant Cell Environ.	35(8)	1369-79	2012		
35348	22317787	Nounjan N., Nghia P.T., Theerakulpisut P.	Exogenous proline and trehalose promote recovery of rice seedlings from salt-stress and differentially modulate antioxidant enzymes and expression of related genes.	J. Plant Physiol.	169(6)	596-604	2012		
35354	22382682	Kim I.S., Kim Y.S., Yoon H.S.	Rice ASR1 protein with reactive oxygen species scavenging and chaperone-like activities enhances acquired tolerance to abiotic stresses in Saccharomyces cerevisiae.	Mol. Cells	33(3)	285-93	2012		
35355	22326950	Sivagami G., Karthikkumar V., Balasubramanian T., Nalini N.	The modulatory influence of p-methoxycinnamic acid, an active rice bran phenolic acid, against 1,2-dimethylhydrazine-induced lipid peroxidation, antioxidant status and aberrant crypt foci in rat colon carcinogenesis.	Chem. Biol. Interact.	196(1-2)	11-22	2012		
35356	22348505	Saito Y., Shigemitsu T., Yamasaki R., Sasou A., Goto F., Kishida K., Kuroda M., Tanaka K., Morita S., Satoh S., Masumura T.	Formation mechanism of the internal structure of type?I protein bodies in rice endosperm: relationship between the localization of prolamin species and the expression of individual genes.	Plant J.	70(6)	1043-55	2012	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Prol-22, pro13b.3, PROLM22,Prol-17, OsEnS-88, pro16.2, PROLM24,RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25,Prol-24, pro13a.3,Prol-16, OsEnS-87, EnS-87, pro16.1,CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,Prol-02, pro10.3,Prol-21, pro13b.2, PROLM20,Prol-20, pro13b.1, PROLM19 ,Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, PROLM28,Prol-23, pro10.4, SSA5,Prol-11, pro13b.17, PROLM13,Prol-05, pro13b.9,Prol-10, pro13b.16, PROLM12,OsEnS-56, pro10.2,pro13b.10,pro13b.7,Prol-15, pro13b.22,pro13b.20,pro13b.13,PG5b, Prol-08, pro13b.14,OsEnS-76, pro13b.19,pro13b.6,pro13a.5,Prol-03, pro13b.5,Prol-26, pro13a.6,Prol-01, CysR10, crP10, pro10.1,Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26,pro13b.4,pro13b.15, PROLM11,Prol-12, pro13b.18,Prol-04, pro13b.8, PROLM4,Prol-14, pro13b.21, PROLM17
35357	22361948	Dixit S., Swamy B.P., Vikram P., Ahmed H.U., Sta Cruz MT., Amante M., Atri D., Leung H., Kumar A.	Fine mapping of QTLs for rice grain yield under drought reveals sub-QTLs conferring a response to variable drought severities.	Theor. Appl. Genet.	125(1)	155-69	2012		
35359	22340849	Christensen A.R., Malcomber S.T.	Duplication and diversification of the LEAFY HULL STERILE1 and Oryza sativa MADS5 SEPALLATA lineages in graminoid Poales.	Evodevo	3	4	2012	PAP2,MADS5,LHS1	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OsMADS5, FDRMADS2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
35360	22378946	Liu H.L., Yin Z.J., Xiao L., Xu Y.N., Qu L.Q.	Identification and evaluation of omega-3 fatty acid desaturase genes for hyperfortifying alpha-linolenic acid in transgenic rice seed.	J. Exp. Bot.	63(8)	3279-87	2012		
35364	22413771	S H., Oo A., P H., Eh M.	The photoprotective protein PsbS exerts control over CO(2) assimilation rate in fluctuating light in rice.	Plant J.	71(3)	402-12	2012		
35365	22438302	Madan P., Jagadish S.V., Craufurd P.Q., Fitzgerald M., Lafarge T., Wheeler T.R.	Effect of elevated CO2 and high temperature on seed-set and grain quality of rice.	J. Exp. Bot.	63(10)	3843-52	2012		
35366	22443269	Song X., Wang D., Ma L., Chen Z., Li P., Cui X., Liu C., Cao S., Chu C., Tao Y., Cao X.	Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.	Plant J.	71(3)	378-89	2012	SHL2,SHO1,_,_	shl2, SHL2, sh2, OsRDR6, RDR6,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,OsARF2, ARF2, OsETT2, ETT2, ARF3a
35368	22492233	Mutuku J.M., Nose A.	Changes in the Contents of Metabolites and Enzyme Activities in Rice Plants Responding to Rhizoctonia solani Kuhn Infection: Activation of Glycolysis and Connection to Phenylpropanoid Pathway.	Plant Cell Physiol.	53(6)	1017-32	2012	_,_,_	OsPFPA3, PFPA3,OsPFK06, PFK06, PFK6,OsPFPB, PFPB, OsPFP-B, PFP-B, PFPbeta
35372	22434153	Turan S., Tripathy B.C.	Salt and genotype impact on antioxidative enzymes and lipid peroxidation in two rice cultivars during de-etiolation.	Protoplasma	250(1)	209-22	2013		
35373	22414443	Nakamura Y., Ono M., Utsumi C., Steup M.	Functional Interaction between Plastidial Starch Phosphorylase and Starch Branching Enzymes from Rice during the Synthesis of Branched Maltodextrins.	Plant Cell Physiol.	53(5)	869-78	2012	SBE1,_,SBE3,SBE4	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,Pho1, OsPho1, OsPHOL, PHOL,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
35375	22447493	Rawat N., Chiruvuri Naga N., Raman Meenakshi S., Nair S., Bentur J.S.	A novel mechanism of gall midge resistance in the rice variety Kavya revealed by microarray analysis.	Funct. Integr. Genomics	12(2)	249-64	2012		
35376	22409537	Thangasamy S., Chen P.W., Lai M.H., Chen J., Jauh G.Y.	Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters.	Plant J.	71(2)	288-302	2012	LGD1	
35380	22408076	Yin L.L., Xue H.W.	The MADS29 Transcription Factor Regulates the Degradation of the Nucellus and the nucellar projection during Rice Seed Development.	Plant Cell	24(3)	1049-65	2012		
35381	22393242	Shen Y., Tang D., Wang K., Wang M., Huang J., Luo W., Luo Q., Hong L., Li M., Cheng Z.	ZIP4 in homologous chromosome synapsis and crossover formation in rice meiosis.	J. Cell. Sci.	125(Pt 11)	2581-91	2012	ZEP1,RMC1,_	OsZEP1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsZIP4, ZIP4, SPO22
35391	22183295	Baruch O., Kashkush K.	Analysis of copy-number variation, insertional polymorphism, and methylation status of the tiniest class I (TRIM) and class II (MITE) transposable element families in various rice strains.	Plant Cell Rep.	31(5)	885-93	2012		
35392	22139140	Huang W., Hu J., Yu C., Huang Q., Wan L., Wang L., Qin X., Ji Y., Zhu R., Li S., Zhu Y.	Two non-allelic nuclear genes restore fertility in a gametophytic pattern and enhance abiotic stress tolerance in the hybrid rice plant.	Theor. Appl. Genet.	124(5)	799-807	2012	_	Rf6
35393	22179305	Chen M., Luo J., Shao G., Wei X., Tang S., Sheng Z., Song J., Hu P.	Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1.	Plant Cell Rep.	31(5)	863-72	2012	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4
35394	22194889	Usuki S., Tsai Y.Y., Morikawa K., Nonaka S., Okuhara Y., Kise M., Yu R.K.	IGF-1 induction by acylated steryl beta-glucosides found in a pre-germinated brown rice diet reduces oxidative stress in streptozotocin-induced diabetes.	PLoS ONE	6(12)	e28693	2011		
35400	22207572	Tsuda K., Ito Y., Sato Y., Kurata N.	Positive autoregulation of a KNOX gene is essential for shoot apical meristem maintenance in rice.	Plant Cell	23(12)	4368-81	2011	OSH6,OSH43,OSH15,OSH1,OSKN2	OsH6, HOS16,OsH43, H43,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
35406	22213809	Kovalchuk N., Smith J., Bazanova N., Pyvovarenko T., Singh R., Shirley N., Ismagul A., Johnson A., Milligan A.S., Hrmova M., Langridge P., Lopato S.	Characterization of the wheat gene encoding a grain-specific lipid transfer protein TdPR61, and promoter activity in wheat, barley and rice.	J. Exp. Bot.	63(5)	2025-40	2012		
35410	22212906	Park S.H., Bang S.W., Jeong J.S., Jung H., Redillas M.C., Kim H.I., Lee K.H., Kim Y.S., Kim J.K.	Analysis of the APX, PGD1 and R1G1B constitutive gene promoters in various organs over three homozygous generations of transgenic rice plants.	Planta	235(6)	1397-408	2012		
35412	22351029	Wakasa Y., Takaiwa F.	Use of a callus-specific selection system to develop transgenic rice seed accumulating a high level of recombinant protein.	Methods Mol. Biol.	847	467-79	2012		
35416	22291889	Li X., Yan W., Agrama H., Jia L., Jackson A., Moldenhauer K., Yeater K., McClung A., Wu D.	Unraveling the complex trait of harvest index with association mapping in rice (Oryza sativa L.).	PLoS ONE	7(1)	e29350	2012		
35418	22306876	Zhang F.T., Fang J., Sun C.H., Li R.B., Luo X.D., Xie J.K., Deng X.J., Chu C.C.	[Characterisation of a rice dwarf and twist leaf 1 (dtl1) mutant and fine mapping of dtl1 gene].	Yi Chuan	34(1)	79-86	2012		
35419	22271747	Xie K., Shen J., Hou X., Yao J., Li X., Xiao J., Xiong L.	Gradual increase of miR156 regulates temporal expression changes of numerous genes during leaf development in rice.	Plant Physiol.	158(3)	1382-94	2012		
35420	22257489	Yang X., Li Y., Ren B., Ding L., Gao C., Shen Q., Guo S.	Drought-induced root aerenchyma formation restricts water uptake in rice seedlings supplied with nitrate.	Plant Cell Physiol.	53(3)	495-504	2012		
35422	22306354	Thounaojam T.C., Panda P., Mazumdar P., Kumar D., Sharma G.D., Sahoo L., Panda S.K.	Excess copper induced oxidative stress and response of antioxidants in rice.	Plant Physiol. Biochem.	53	33-9	2012		
35429	22324885	Scafaro A.P., Yamori W., Carmo-Silva AE., Salvucci M.E., Von Caemmerer S., Atwell B.J.	Rubisco activity is associated with photosynthetic thermotolerance in a wild rice (Oryza meridionalis).	Physiol Plant	146(1)	99-109	2012		
35433	22458969	Sun Y., Lin Z., Reinders A., Ward J.M.	Functionally Important Amino Acids in Rice sucrose transporter OsSUT1.	Biochemistry	51(15)	3284-91	2012	SUT1	OsSUT1, OsSUT2
35434	22481119	Abe A., Takagi H., Fujibe T., Aya K., Kojima M., Sakakibara H., Uemura A., Matsuoka M., Terauchi R.	OsGA20ox1, a candidate gene for a major QTL controlling seedling vigor in rice.	Theor. Appl. Genet.	125(4)	647-57	2012		
35435	22489666	Yamane K., Mitsuya S., Taniguchi M., Miyake H.	Salt-induced chloroplast protrusion is the process of exclusion of ribulose-1,5-bisphosphate carboxylase/oxygenase from chloroplasts into cytoplasm in leaves of rice.	Plant Cell Environ.	35(9)	1663-71	2012		
35436	22420996	Cho S.C., Chao Y.Y., Kao C.H.	Calcium deficiency increases Cd toxicity and Ca is required for heat-shock induced Cd tolerance in rice seedlings.	J. Plant Physiol.	169(9)	892-8	2012		
35439	22434195	Lin Q., Wang D., Dong H., Gu S., Cheng Z., Gong J., Qin R., Jiang L., Li G., Wang J.L., Wu F., Guo X., Zhang X., Lei C., Wang H., Wan J.	Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.	Nat Commun	3	752	2012	_,TAD1,MOC1	OsWD40-33, OsCCS52B,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33
35441	22396244	Singh S.B., Sharma R., Singh N.	Persistence of pyrazosulfuron in rice-field and laboratory soil under Indian tropical conditions.	Pest Manag. Sci.	68(6)	828-33	2012		
35444	22452575	Huynh V.B., Repellin A., Zuily-Fodil Y., Pham-Thi AT.	Aluminum stress response in rice: effects on membrane lipid composition and expression of lipid biosynthesis genes.	Physiol Plant	146(3)	272-84	2012		
35446	22325870	Lee J.H., Park S.H., Ahn J.H.	Functional conservation and diversification between rice OsMADS22/OsMADS55 and Arabidopsis SVP proteins.	Plant Sci.	185-186	97-104	2012		
35449	22470057	Fukayama H., Ueguchi C., Nishikawa K., Katoh N., Ishikawa C., Masumoto C., Hatanaka T., Misoo S.	Overexpression of Rubisco Activase Decreases the Photosynthetic CO2 Assimilation Rate by Reducing Rubisco Content in Rice Leaves.	Plant Cell Physiol.	53(6)	976-86	2012	_,RBCL,_,_,RBCS,_,_	RbcS3, OsRBCS3, OsRbcS3, rbcS ,rbcL, rbcA, OsrbcL,RbcS5, OsRBCS5, OsRbcS5,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,RbcS1, OsRBCS1, OsRbcS1,RbcS, RbcS4, OsRBCS4, OsRbcS4
35451	22499169	Ganguly M., Datta K., Roychoudhury A., Gayen D., Sengupta D.N., Datta S.K.	Overexpression of Rab16A gene in indica rice variety for generating enhanced salt tolerance.	Plant Signal Behav	7(4)	502-9	2012		
35455	22238157	Pengthaisong S., Withers S.G., Kuaprasert B., Svasti J., Cairns J.R.	The role of the oligosaccharide binding cleft of rice BGlu1 in hydrolysis of cellooligosaccharides and in their synthesis by rice BGlu1 glycosynthase.	Protein Sci.	21(3)	362-72	2012		
35457	22456953	Miyamoto K., Shimizu T., Mochizuki S., Nishizawa Y., Minami E., Nojiri H., Yamane H., Okada K.	Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice.	Protoplasma	250(1)	241-9	2013	_	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
35458	22389198	Itoh M., Nishibori N., Sagara T., Horie Y., Motojima A., Morita K.	Extract of Fermented Brown Rice Induces Apoptosis of Human Colorectal Tumor Cells by Activating Mitochondrial Pathway.	Phytother Res	26(11)	1661-6	2012		
35464	22136218	Moumeni A., Satoh K., Kondoh H., Asano T., Hosaka A., Venuprasad R., Serraj R., Kumar A., Leung H., Kikuchi S.	Comparative analysis of root transcriptome profiles of two pairs of drought-tolerant and susceptible rice near-isogenic lines under different drought stress.	BMC Plant Biol.	11	174	2011		
35465	22157085	Chen L.Q., Qu X.Q., Hou B.H., Sosso D., Osorio S., Fernie A.R., Frommer W.B.	Sucrose efflux mediated by SWEET proteins as a key step for phloem transport.	Science	335(6065)	207-11	2012	XA13,11N3	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14
35475	22271304	Chang Y., Zhao C., Zhu Z., Wu Z., Zhou J., Zhao Y., Lu X., Xu G.	Metabolic profiling based on LC/MS to evaluate unintended effects of transgenic rice with cry1Ac and sck genes.	Plant Mol. Biol.	78(4-5)	477-87	2012		
35476	22363605	Yoshimura Y., Zaima N., Moriyama T., Kawamura Y.	Different localization patterns of anthocyanin species in the pericarp of black rice revealed by imaging mass spectrometry.	PLoS ONE	7(2)	e31285	2012		
35477	22289080	Byeon Y., Park S., Kim Y.S., Park D.H., Lee S., Back K.	Light-regulated melatonin biosynthesis in rice during the senescence process in detached leaves.	J. Pineal Res.	53(1)	107-11	2012		
35478	22257308	Subramoni S., Pandey A., Vishnupriya M.R., Patel H.K., Sonti R.V.	The ColRS system of Xanthomonas oryzae pv. oryzae is required for virulence and growth in iron-limiting conditions.	Mol. Plant Pathol.	13(7)	690-703	2012		
35481	22384086	Guo W., Zou L.F., Li Y.R., Cui Y.P., Ji Z.Y., Cai L.L., Zou H.S., Hutchins W.C., Yang C.H., Chen G.Y.	Fructose-bisphophate aldolase exhibits functional roles between carbon metabolism and the hrp system in rice pathogen Xanthomonas oryzae pv. oryzicola.	PLoS ONE	7(2)	e31855	2012		
35487	22252123	Bai Y.Y., Yan R.H., Ye G.Y., Huang F., Wangila D.S., Wang J.J., Cheng J.A.	Field response of aboveground non-target arthropod community to transgenic Bt-Cry1Ab rice plant residues in postharvest seasons.	Transgenic Res.	21(5)	1023-32	2012		
35489	22468358	Randhawa G.J., Singh M.	Multiplex, construct-specific, and real-time PCR-based analytical methods for Bt rice with cry1Ac gene.	J AOAC Int	95(1)	186-94			
35494	22361804	Farr? G., Sudhakar D., Naqvi S., Sandmann G., Christou P., Capell T., Zhu C.	Transgenic rice grains expressing a heterologous rho-hydroxyphenylpyruvate dioxygenase shift tocopherol synthesis from the gamma to the alpha isoform without increasing absolute tocopherol levels.	Transgenic Res.	21(5)	1093-7	2012		
35499	22446601	Liu F., Zhao Y.Y., Zheng J.G.	High-level expression of modified gene encoding human adiponectin in transgenic rice.	Biol. Res.	44(4)	369-375	2011		
35503	22195579	Bocco R., Lorieux M., Seck P.A., Futakuchi K., Manneh B., Baimey H., Ndjiondjop M.N.	Agro-morphological characterization of a population of introgression lines derived from crosses between IR 64 (Oryza sativa indica) and TOG 5681 (Oryza glaberrima) for drought tolerance.	Plant Sci.	183	65-76	2012		
35507	22334645	Ito S., Song Y.H., Josephson-Day AR., Miller R.J., Breton G., Olmstead R.G., Imaizumi T.	FLOWERING BHLH transcriptional activators control expression of the photoperiodic flowering regulator CONSTANS in Arabidopsis.	Proc. Natl. Acad. Sci. U.S.A.	109(9)	3582-7	2012	_	OsFBH1, OsbHLH112
35512	22418094	Pengthaisong S., Chen C.F., Withers S.G., Kuaprasert B., Ketudat Cairns JR.	Rice BGlu1 glycosynthase and wild type transglycosylation activities distinguished by cyclophellitol inhibition.	Carbohydr. Res.	352	51-9	2012		
35514	22305189	Que S., Li K., Chen M., Wang Y., Yang Q., Zhang W., Zhang B., Xiong B., He H.	PhosphoRice: a meta-predictor of rice-specific phosphorylation sites.	Plant Methods	8	5	2012		
35516	22417733	Frei M., Wissuwa M., Pariasca-Tanaka J., Chen C.P., S?dekum KH., Kohno Y.	Leaf ascorbic acid level - Is it really important for ozone tolerance in rice?	Plant Physiol. Biochem.	59	63-70	2012	_	OsGME1, GME1
35520	22349461	Zhou H., Liu Q., Li J., Jiang D., Zhou L., Wu P., Lu S., Li F., Zhu L., Liu Z., Chen L., Liu Y.G., Zhuang C.	Photoperiod- and thermo-sensitive genic male sterility in rice are caused by a point mutation in a novel noncoding RNA that produces a small RNA.	Cell Res.	22(4)	649-60	2012	_	P/TMS12-1, osa-smR5864w, osa-smR5864m
35524	22382062	Wang X.F., Chen X.Y., Zhang X.M., Zhou Y., Zhang H.C., Miao Q.M., Fang J., Xu J.F.	[Molecular characteristics and specific PCR detection of transgenic rice containing Cry1Ab].	Yi Chuan	34(2)	208-14	2012		
35526	22470056	Lv M.Z., Chao D.Y., Shan J.X., Zhu M.Z., Shi M., Gao J.P., Lin H.X.	Rice carotenoid beta-ring hydroxylase CYP97A4 is Involved in Lutein Biosynthesis.	Plant Cell Physiol.	53(6)	987-1002	2012	CYP97C2,CYP97B4,CYP97A4	CYP97C2,CYP97B4, CYP97B4a,CYP97A4, OsCYP97A4
35528	22462395	Nam M.H., Huh S.M., Kim K.M., Park W.J., Seo J.B., Cho K., Kim D.Y., Kim B.G., Yoon I.S.	Comparative proteomic analysis of early salt stress-responsive proteins in roots of SnRK2 transgenic rice.	Proteome Sci	10(1)	25	2012		
35529	22494411	Dalal V.K., Tripathy B.C.	Modulation of chlorophyll biosynthesis by water stress in rice seedlings during chloroplast biogenesis.	Plant Cell Environ.	35(9)	1685-703	2012		
35536	22448681	Ono A., Yamaguchi K., Fukada-Tanaka S., Terada R., Mitsui T., Iida S.	A null mutation of ROS1a for DNA demethylation in rice is not transmittable to progeny.	Plant J.	71(4)	564-74	2012	_,_,_,_,_,TA2	ROS1B,ROS1D, ROS1d,DML3b,DML3a,ROS1C, ROS1c, DME2,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1 
35538	22414560	Krom N., Ramakrishna W.	Retrotransposon insertions in rice gene pairs associated with reduced conservation of gene pairs in grass genomes.	Genomics	99(5)	308-14	2012		
35539	22388917	Ye R., Zhou F., Lin Y.	Two novel positive cis-regulatory elements involved in green tissue-specific promoter activity in rice (Oryza sativa L ssp.).	Plant Cell Rep.	31(7)	1159-72	2012		
35541	22419106	Shao T., Qian Q., Tang D., Chen J., Li M., Cheng Z., Luo Q.	A novel gene IBF1 is required for the inhibition of brown pigment deposition in rice hull furrows.	Theor. Appl. Genet.	125(2)	381-90	2012		
35551	22458212	Gonz?lez A., Labr?n N., Alvarez R.M., Jayaro Y., Gamboa C., Reyes E., Barrientos V.	Mechanisms of Oryza sativa (Poaceae) resistance to Tagosodes orizicolus (Homoptera: Delphacidae) under greenhouse condition in Venezuela.	Rev. Biol. Trop.	60(1)	105-17	2012		
35552	22446930	Fukuoka S., Mizobuchi R., Saka N., Ivan S., Matsumoto T., Okuno K., Yano M.	A multiple gene complex on rice chromosome 4 is involved in durable resistance to rice blast.	Theor. Appl. Genet.	125(3)	551-9	2012		
35558	22146734	Kajikawa M., Fujibe T., Uraguchi S., Miwa K., Fujiwara T.	Expression of the Arabidopsis borate efflux transporter gene, AtBOR4, in rice affects the xylem loading of boron and tolerance to excess boron.	Biosci. Biotechnol. Biochem.	75(12)	2421-3	2011		
35568	22403871	Verma D., Joshi R., Shukla A., Kumar P.	Protocol for in vitro somatic embryogenesis and regeneration of rice (Oryza sativa L.).	Indian J. Exp. Biol.	49(12)	958-63	2011		
35571	22147755	Ying J.Z., Shan J.X., Gao J.P., Zhu M.Z., Shi M., Lin H.X.	Identification of Quantitative Trait Loci for Lipid Metabolism in Rice Seeds.	Mol Plant	5(4)	865-75	2012		
35572	22198727	Suji K.K., Biji K.R., Poornima R., Prince K.S., Amudha K., Kavitha S., Mankar S., Babu R.C.	Mapping QTLs for plant Phenology and Production Traits Using Indica Rice (Oryza sativa L.) Lines Adapted to Rainfed Environment.	Mol. Biotechnol.	52(2)	151-60	2012		
35575	22180466	Kusano M., Fukushima A., Fujita N., Okazaki Y., Kobayashi M., Oitome N.F., Ebana K., Saito K.	Deciphering starch quality of rice kernels using metabolite profiling and pedigree network analysis.	Mol Plant	5(2)	442-51	2012		
35577	22157756	Fenyk S., Campillo Ade S., Pohl E., Hussey P.J., Cann M.J.	A nucleotide phosphatase activity in the nucleotide binding domain of an orphan resistance protein from rice.	J. Biol. Chem.	287(6)	4023-32	2012		
35581	22212819	Shimizu T., Nakazono-Nagaoka E., Akita F., Wei T., Sasaya T., Omura T., Uehara-Ichiki T.	Hairpin RNA derived from the gene for Pns9, a viroplasm matrix protein of Rice gall dwarf virus, confers strong resistance to virus infection in transgenic rice plants.	J. Biotechnol.	157(3)	421-7	2012		
35583	22189496	Knief C., Delmotte N., Chaffron S., Stark M., Innerebner G., Wassmann R., von Mering C., Vorholt J.A.	Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice.	ISME J	6(7)	1378-90	2012		
35585	22351022	Charng Y.C.	A one-time inducible transposon to create knockout mutants in rice.	Methods Mol. Biol.	847	369-77	2012		
35589	22389767	Fung W.T., Subramaniam G., Lee J., Loh H.M., Leung P.H.	Assessment of Extracts from Red Yeast Rice for Herb-Drug Interaction by in-vitro and in-vivo assays.	Sci Rep	2	298	2012		
35591	22348048	Meng Y., Shao C.	Large-scale identification of mirtrons in Arabidopsis and rice.	PLoS ONE	7(2)	e31163	2012		
35592	22313783	Imai T., Ohashi Y., Mitsuhara I., Seo S., Toshima H., Hasegawa M.	Identification of a degradation intermediate of the momilactone A rice phytoalexin by the rice blast fungus.	Biosci. Biotechnol. Biochem.	76(2)	414-6	2012		
35599	22215681	Wang Q., Hillwig M.L., Okada K., Yamazaki K., Wu Y., Swaminathan S., Yamane H., Peters R.J.	Characterization of CYP76M5-8 indicates metabolic plasticity within a plant biosynthetic gene cluster.	J. Biol. Chem.	287(9)	6159-68	2012	CYP76M4P,CYP76M11P,CYP76M14,CYP76L1,CYP76M13,CYP76M1,CYP76M5,CYP76M9,CYP76M6,CYP76M10,CYP76M2,CYP76M7	CYP76M4p,CYP76M11p,CYP76M14,CYP76L1,CYP76M13,CYP76M1,CYP76M5,CYP76M9,CYP76M6,CYP76M10,CYP76M2,OsCYP76M7, CYP76M10, OsCYP76M10
35600	22232242	Franco I., Castillo E., P?rez MD., Calvo M., S?nchez L.	Effects of hydrostatic high pressure on the structure and antibacterial activity of recombinant human lactoferrin from transgenic rice.	Biosci. Biotechnol. Biochem.	76(1)	53-9	2012		
35602	22363522	Singh A., Baranwal V., Shankar A., Kanwar P., Ranjan R., Yadav S., Pandey A., Kapoor S., Pandey G.K.	Rice Phospholipase A superfamily: organization, phylogenetic and expression analysis during abiotic stresses and development.	PLoS ONE	7(2)	e30947	2012		
35603	22347394	Xu H., Gao Y., Wang J.	Transcriptomic analysis of rice (Oryza sativa) developing embryos using the RNA-Seq technique.	PLoS ONE	7(2)	e30646	2012		
35606	22293194	Yang Z., Lu Q., Wen X., Chen F., Lu C.	Functional analysis of the rice rubisco activase promoter in transgenic Arabidopsis.	Biochem. Biophys. Res. Commun.	418(3)	565-70	2012		
35607	22229385	Matsuda F., Okazaki Y., Oikawa A., Kusano M., Nakabayashi R., Kikuchi J., Yonemaru J.I., Ebana K., Yano M., Saito K.	Dissection of genotype-phenotype associations in rice grains using metabolome quantitative trait loci analysis.	Plant J.	70(4)	624-36	2012		
35609	22267009	Abe A., Kosugi S., Yoshida K., Natsume S., Takagi H., Kanzaki H., Matsumura H., Yoshida K., Mitsuoka C., Tamiru M., Innan H., Cano L., Kamoun S., Terauchi R.	Genome sequencing reveals agronomically important loci in rice using MutMap.	Nat. Biotechnol.	30(2)	174-8	2012		
35611	22427867	Jia L., Yan W., Zhu C., Agrama H.A., Jackson A., Yeater K., Li X., Huang B., Hu B., McClung A., Wu D.	Allelic analysis of sheath blight resistance with association mapping in rice.	PLoS ONE	7(3)	e32703	2012		
35612	22383984	Li S., Wang S., Deng Q., Zheng A., Zhu J., Liu H., Wang L., Gao F., Zou T., Huang B., Cao X., Xu L., Yu C., Ai P., Li P.	Identification of genome-wide variations among three elite restorer lines for hybrid-rice.	PLoS ONE	7(2)	e30952	2012		
35613	22367872	Guiderdoni E., Gantet P.	Ac-Ds solutions for rice insertion mutagenesis.	Methods Mol. Biol.	859	177-87	2012		
35614	22232252	Kondo M., Yoshida Y., Miyata C., Fujiwara S., Nakajima Y., Hirai H., Takayama S., Isogai A., Che F.S.	Genetic organization of the hrp gene cluster in Acidovorax avenae strain N1141 and a novel effector protein that elicits immune responses in rice (Oryza sativa L.).	Biosci. Biotechnol. Biochem.	76(1)	129-38	2012		
35616	22291881	Qu Z., Li L., Luo J., Wang P., Yu S., Mou T., Zheng X., Hu Z.	QTL mapping of combining ability and heterosis of agronomic traits in rice backcross recombinant inbred lines and hybrid crosses.	PLoS ONE	7(1)	e28463	2012		
35617	22235904	Buschart A., Sachs S., Chen X., Herglotz J., Krause A., Reinhold-Hurek B.	Flagella mediate endophytic competence rather than act as MAMPS in rice-Azoarcus sp. strain BH72 interactions.	Mol. Plant Microbe Interact.	25(2)	191-9	2012		
35619	22297847	Kanjanaphachoat P., Wei B.Y., Lo S.F., Wang I.W., Wang C.S., Yu S.M., Yen M.L., Chiu S.H., Lai C.C., Chen L.J.	Serotonin accumulation in transgenic rice by over-expressing tryptophan decarboxlyase results in a dark brown phenotype and stunted growth.	Plant Mol. Biol.	78(6)	525-43	2012		
35621	22332867	Castillo E., P?rez MD., Franco I., Calvo M., S?nchez L.	Kinetic and thermodynamic parameters for heat denaturation of human recombinant lactoferrin from rice (1) (1) This article is part of a Special Issue entitled Lactoferrin and has undergone the Journal's usual peer review process.	Biochem. Cell Biol.	90(3)	389-96	2012		
35623	22329407	Fang L., Zhao F., Cong Y., Sang X., Du Q., Wang D., Li Y., Ling Y., Yang Z., He G.	Rolling-leaf14 is a 2OG-Fe (II) oxygenase family protein that modulates rice leaf rolling by affecting secondary cell wall formation in leaves.	Plant Biotechnol. J.	10(5)	524-32	2012	RL14	2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24
35633	22383627	Sano N., Permana H., Kumada R., Shinozaki Y., Tanabata T., Yamada T., Hirasawa T., Kanekatsu M.	Proteomic Analysis of Embryonic Proteins Synthesized from Long-Lived mRNAs During Germination of Rice Seeds.	Plant Cell Physiol.	53(4)	687-98	2012		
35635	22382064	Liu C.H., Li X.Y., Zhang J.H., Lin D.Z., Dong Y.J.	[Characteristics and molecular mapping of a novel chlorophyll-deficient yellow-leaf mutant in rice].	Yi Chuan	34(2)	223-9	2012		
35636	22353560	Ye J.W., Gong Z.Y., Chen C.G., Mi H.L., Chen G.Y.	A mutation of OSOTP 51 leads to impairment of photosystem I complex assembly and serious photo-damage in rice.	J Integr Plant Biol	54(2)	87-98	2012		
35637	22350178	Liu G., Zhu H., Zhang G., Li L., Ye G.	Dynamic analysis of QTLs on tiller number in rice (Oryza sativa L.) with single segment substitution lines.	Theor. Appl. Genet.	125(1)	143-53	2012		
35648	22217248	Kim K., Choi D., Kim S.M., Kwak D.Y., Choi J., Lee S., Lee B.C., Hwang D., Hwang I.	A systems approach for identifying resistance factors to Rice stripe virus.	Mol. Plant Microbe Interact.	25(4)	534-45	2012		
35650	22403009	Bryant R., Proctor A., Hawkridge M., Jackson A., Yeater K., Counce P., Yan W., McClung A., Fjellstrom R.	Genetic variation and association mapping of silica concentration in rice hulls using a germplasm collection.	Genetica	139(11-12)	1383-98	2012		
35652	22325874	Chang I.F., Hsu J.L., Hsu P.H., Sheng W.A., Lai S.J., Lee C., Chen C.W., Hsu J.C., Wang S.Y., Wang L.Y., Chen C.C.	Comparative phosphoproteomic analysis of microsomal fractions of Arabidopsis thaliana and Oryza sativa subjected to high salinity.	Plant Sci.	185-186	131-42	2012		
35658	22738867	Hao Z., Wang L., Huang F., Tao R.	Expression of defense genes and antioxidant defense responses in rice resistance to neck blast at the preliminary heading stage and full heading stage.	Plant Physiol. Biochem.	57	222-30	2012		
35659	22530609	Oomen R.J., Benito B., Sentenac H., Rodr?guez-Navarro A., Tal?n M., V?ry AA., Domingo C.	HKT2;2/1, a K(+) -permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism.	Plant J.	71(5)	750-62	2012		
35663	22698746	Zhang G.H., Wang H., Wang X.D., Feng M., Li H.M., Li S.Y.	[Isolation of the promoter region of HAK gene from Aeluropus littoralis and functional analysis in rice].	Yi Chuan	34(6)	742-8	2012		
35668	22607456	Grand X., Espinoza R., Michel C., Cros S., Chalvon V., Jacobs J., Morel J.B.	Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.	Plant Biotechnol. J.	10(7)	840-50	2012		
35669	22662107	Zhang L., Yu S., Zuo K., Luo L., Tang K.	Identification of gene modules associated with drought response in rice by network-based analysis.	PLoS ONE	7(5)	e33748	2012		
35670	22649533	Ziska L.H., Gealy D.R., Tomecek M.B., Jackson A.K., Black H.L.	Recent and projected increases in atmospheric CO2 concentration can enhance gene flow between wild and genetically altered rice (Oryza sativa).	PLoS ONE	7(5)	e37522	2012		
35673	22698753	Shah K., Nahakpam S.	Heat exposure alters the expression of SOD, POD, APX and CAT isozymes and mitigates low cadmium toxicity in seedlings of sensitive and tolerant rice cultivars.	Plant Physiol. Biochem.	57	106-13	2012		
35675	22754356	Cheng A., Ismail I., Osman M., Hashim H.	Simple and rapid molecular techniques for identification of amylose levels in rice varieties.	Int J Mol Sci	13(5)	6156-66	2012		
35676	22566008	Kaup R.M., Khayyal M.T., Verspohl E.J.	Antidiabetic Effects of a Standardized Egyptian Rice Bran Extract.	Phytother Res	27(2)	264-71	2012		
35679	22585409	Liu Q.	Novel miRNAs in the control of arsenite levels in rice.	Funct. Integr. Genomics	12(4)	649-58	2012		
35684	22617629	Shrestha S., Brueck H., Asch F.	Chlorophyll index, photochemical reflectance index and chlorophyll fluorescence measurements of rice leaves supplied with different N levels.	J. Photochem. Photobiol. B, Biol.	113	7-13	2012		
35688	22593226	Vonholdt B.M., Takuno S., Gaut B.S.	Recent Retrotransposon Insertions Are Methylated and Phylogenetically Clustered in Japonica Rice (Oryza sativa spp. japonica).	Mol. Biol. Evol.	29(10)	3193-203	2012		
35689	22761959	Karan R., Deleon T., Biradar H., Subudhi P.K.	Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes.	PLoS ONE	7(6)	e40203	2012		
35690	22709342	Niroula R.K., Pucciariello C., Ho V.T., Novi G., Fukao T., Perata P.	SUB1A-dependent and -independent mechanisms are involved in the flooding tolerance of wild rice species.	Plant J.	72(2)	282-93	2012	SUB1C,SUB1A	Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
35698	22711693	Ahamed A., Murai-Hatano M., Ishikawa-Sakurai J., Hayashi H., Kawamura Y., Uemura M.	Cold-Stress-Induced Acclimation in Rice is Mediated by Root-Specific Aquaporins.	Plant Cell Physiol.	53(8)	1445-56	2012		
35709	22843026	Wakasa Y., Ozawa K., Takaiwa F.	Agrobacterium-mediated co-transformation of rice using two selectable marker genes derived from rice genome components.	Plant Cell Rep.	31(11)	2075-84	2012		
35712	22856683	Park S., Lee D.E., Jang H., Byeon Y., Kim Y.S., Back K.	Melatonin-rich transgenic rice plants exhibit resistance to herbicide-induced oxidative stress.	J. Pineal Res.	54(3)	258-63	2013		
35713	22747776	Hummel A.W., Doyle E.L., Bogdanove A.J.	Addition of transcription activator-like effector binding sites to a pathogen strain-specific rice bacterial blight resistance gene makes it effective against additional strains and against bacterial leaf streak.	New Phytol.	195(4)	883-93	2012		
35714	22864386	Qiu X., Gong R., Tan Y., Yu S.	Mapping and characterization of the major quantitative trait locus qSS7 associated with increased length and decreased width of rice seeds.	Theor. Appl. Genet.	125(8)	1717-26	2012		
35716	22848789	Masuda H., Ishimaru Y., Aung M.S., Kobayashi T., Kakei Y., Takahashi M., Higuchi K., Nakanishi H., Nishizawa N.K.	Iron biofortification in rice by the introduction of multiple genes involved in iron nutrition.	Sci Rep	2	543	2012	GLUB1,SUT1,GLB1,YSL2	GluB1, GluB1-A, GluB-1, OsGluB1,OsSUT1, OsSUT2,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,OsYSL2, Os-YSL2, OsYs6 
35717	22805093	Kanzaki H., Yoshida K., Saitoh H., Fujisaki K., Hirabuchi A., Allaux L., Fournier E., Tharreau D., Terauchi R.	Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions.	Plant J.			2012		
35720	22772587	Shao G., Wei X., Chen M., Tang S., Luo J., Jiao G., Xie L., Hu P.	Allelic variation for a candidate gene for GS7, responsible for grain shape in rice.	Theor. Appl. Genet.	125(6)	1303-12	2012	GS7	
35726	22811617	Liu Z., Li Y., Zhao J., Chen X., Jian G., Peng Y., Qi F.	Differentially expressed genes distributed over chromosomes and implicated in certain biological processes for site insertion genetically modified rice kemingdao.	Int. J. Biol. Sci.	8(7)	953-63	2012		
35729	22919301	Chen S., Zheng X., Wang D., Chen L., Xu C., Zhang X.	Effect of Long-Term Paddy-Upland Yearly Rotations on Rice (Oryza sativa) Yield, Soil Properties, and Bacteria Community Diversity.	ScientificWorldJournal	2012	279641	2012		
35730	22912788	Jia Y., Jia M.H., Wang X., Liu G.	Indica and japonica crosses resulting in linkage block and recombination suppression on rice chromosome 12.	PLoS ONE	7(8)	e43066	2012		
35735	22912843	Zhang T., Zhao X., Wang W., Pan Y., Huang L., Liu X., Zong Y., Zhu L., Yang D., Fu B.	Comparative transcriptome profiling of chilling stress responsiveness in two contrasting rice genotypes.	PLoS ONE	7(8)	e43274	2012		
35740	22919327	Gil de Los Santos D., Gil Turnes C., Rochedo Concei??o F.	Bioremediation of Parboiled Rice Effluent Supplemented with Biodiesel-Derived Glycerol Using Pichia pastoris X-33.	ScientificWorldJournal	2012	492925	2012		
35743	22911586	Proc?pio AR., Proc?pio RE., Pizzirani-Kleiner AA., Melo I.S.	Diversity of propanil-degrading bacteria isolated from rice rhizosphere and their potential for plant growth promotion.	Genet. Mol. Res.	11(3)	2021-34	2012		
35745	22687573	Wu J., Yu H., Dai H., Mei W., Huang X., Zhu S., Peng M.	Metabolite profiles of rice cultivars containing bacterial blight-resistant genes are distinctive from susceptible rice.	Acta Biochim. Biophys. Sin. (Shanghai)	44(8)	650-9	2012		
35747	22905132	Yang H.L., Liu Y.J., Wang C.L., Zeng Q.Y.	Molecular Evolution of Trehalose-6-phosphate synthase (TPS) Gene Family in Populus, Arabidopsis and Rice.	PLoS ONE	7(8)	e42438	2012		
35748	22870386	Kharabian-Masouleh A., Waters D.L., Reinke R.F., Ward R., Henry R.J.	SNP in starch biosynthesis genes associated with nutritional and functional properties of rice.	Sci Rep	2	557	2012		
35752	22562145	Luan J., Wang F., Li Y., Zhang B., Zhang J.	Mapping quantitative trait loci conferring resistance to rice black-streaked virus in maize (Zea mays L.).	Theor. Appl. Genet.	125(4)	781-91	2012		
35755	22616023	Schmidt R., Schippers J.H., Welker A., Mieulet D., Guiderdoni E., Mueller-Roeber B.	Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.	AoB Plants	2012	pls011	2012	HSFC1A,HSFC1B	HSfC1a, OsHsfC1a, OsHsf-02, rHsf13, HSF02, HSF13,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, HSF11,  rHsf11
35757	22509807	Gong C.Y., Li Q., Yu H.T., Wang Z., Wang T.	Proteomics insight into the biological safety of transgenic modification of rice as compared with conventional genetic breeding and spontaneous genotypic variation.	J. Proteome Res.	11(5)	3019-29	2012		
35758	22659522	Liu J., Li W., Ning Y., Shirsekar G., Wang X., Dai L., Wang Z., Liu W., Wang G.L.	The U-box E3 ligase SPL11/PUB13 Is a Convergence Point of Defense and Flowering Signaling in Plants.	Plant Physiol.	160(1)	28-37	2012	SPL11,RAC1,HD3A,_,_,SE1,_	spl11, spl11*, OsPUB11, PUB11,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,RBS1, Rbs1,SPIN6, Spin6, SIP11 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Spin1, SPIN1
35759	22566494	Park S.H., Chung P.J., Juntawong P., Bailey-Serres J., Kim Y.S., Jung H., Bang S.W., Kim Y.K., Do Choi Y., Kim J.K.	Posttranscriptional Control of Photosynthetic mRNA Decay under Stress Conditions Requires 3' and 5' Untranslated Regions and Correlates with Differential Polysome Association in Rice.	Plant Physiol.	159(3)	1111-24	2012	YGL6 ,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PSBX,UCL35,UCL4,_,_,_,ENODL4,ENODL12,YGDL1,_,_,_,_,TCD9,_,_,_,ATASE3,_,PSAK,PSAD,SSIIB,_,_,PSAA,_,_,PSBY,_,_,ABC1,_,GBSSII,CAB1R,RBCS	CSP41b, LGL1,OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1,CabE,PsbP,PsbP,,,,,,,,,,,,,,,,,,,,PsbX,OsUCL35,OsUCL4,OsCBSSIS1,ASCAB9-A, CP26, Lhcb5,OsTK, TK,OsENODL4,OsENODL12,OsAld-Y, Ald-Y, YGDL-1 ,OspPGM, pPGM ,OsPFPB, PFPB, OsPFP-B, PFP-B, PFPbeta,OsPFK06, PFK06, PFK6,,OsCPn60alpha3, OsCPn60a3,OsEno5, Eno5,PsbP,psaN,Atase3, OsATASE3,,PsaK,PsaD, OsPsaD,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,FNR, PetH,CP24, Lhcb6,PsaA,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,OsFKII, OsFK1, FKII, FK1,PsbY,OsCIN4, CIN4, OsCIN5, CIN5,RbcS3, OsRBCS3, OsRbcS3, rbcS ,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,Pho1, OsPho1, OsPHOL, PHOL,GBSS2,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
35767	22522577	Chen Y.A., Chi W.C., Huang T.L., Lin C.Y., Quynh Nguyeh TT., Hsiung Y.C., Chia L.C., Huang H.J.	Mercury-induced biochemical and proteomic changes in rice roots.	Plant Physiol. Biochem.	55	23-32	2012		
35769	22705591	Bahuguna R.N., Joshi R., Shukla A., Pandey M., Kumar J.	Thiamine primed defense provides reliable alternative to systemic fungicide carbendazim against sheath blight disease in rice (Oryza sativa L.).	Plant Physiol. Biochem.	57	159-67	2012		
35776	22570626	Zhang C., Xu Y., Guo S., Zhu J., Huan Q., Liu H., Wang L., Luo G., Wang X., Chong K.	Dynamics of brassinosteroid response modulated by negative regulator LIC in rice.	PLoS Genet.	8(4)	e1002686	2012	_,ILI1,_, LIC,_,BZR1	GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, SKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,ILI1, OsbHLH154, OsILI1,Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175,OsC3H46, C3H46, OsLIC,GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsBZR1, Os BZR1
35777	22606331	Liu Z., Zhao J., Li Y., Zhang W., Jian G., Peng Y., Qi F.	Non-uniform distribution pattern for differentially expressed genes of transgenic rice Huahui 1 at different developmental stages and environments.	PLoS ONE	7(5)	e37078	2012		
35779	22609438	Matsumura H., Mizohata E., Ishida H., Kogami A., Ueno T., Makino A., Inoue T., Yokota A., Mae T., Kai Y.	Crystal structure of rice rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate.	J. Mol. Biol.	422(1)	75-86	2012		
35787	22715111	Xiang J.J., Zhang G.H., Qian Q., Xue H.W.	SEMI-ROLLED LEAF1 Encodes a Putative Glycosylphosphatidylinositol-Anchored Protein and Modulates Rice leaf rolling by Regulating the Formation of Bulliform Cells.	Plant Physiol.	159(4)	1488-500	2012	_,_,SRL1,_,_,_,_,_,_,_,TIP4;2,_,GLUP6,_,_	OsVHA-B, VHA-B,SKD1,OsSRL1, CLD1/SRL1, CLD1, OsCLD1,,,,,,,Chalk5,OsTIP4;2, TIP4.2, TIP4-2,OVP1,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,VHA-A2, VHAA2,
35788	22751322	Yadav D.K., Islam S.M., Tuteja N.	Rice heterotrimeric G-protein Gamma subunits (RGG1 and RGG2) are differentially regulated under abiotic stress.	Plant Signal Behav	7(7)	733-40	2012	RGG2,_	,RGG1
35790	22670578	Zhang L., Zhao Y.L., Gao L.F., Zhao G.Y., Zhou R.H., Zhang B.S., Jia J.Z.	TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat.	New Phytol.	195(3)	574-84	2012		
35791	22751999	Kwon T., Lee J.H., Park S.K., Hwang U.H., Cho J.H., Kwak D.Y., Youn Y.N., Yeo U.S., Song Y.C., Nam J., Kang H.W., Nam M.H., Park D.S.	Fine mapping and identification of candidate rice genes associated with qSTV11 ( SG ), a major QTL for rice stripe disease resistance.	Theor. Appl. Genet.	125(5)	1033-46	2012		
35794	22805217	Tan C., Weng X.Y., Yan W.H., Bai X.F., Xing Y.Z.	[Ghd7, a pleiotropic gene controlling flag leaf area in rice].	Yi Chuan	34(7)	901-6	2012		
35796	22701725	Liu Y., Zhou T., Crowley D., Li L., Liu D., Zheng J., Yu X., Pan G., Hussain Q., Zhang X., Zheng J.	Decline in Topsoil Microbial Quotient, Fungal Abundance and C Utilization Efficiency of Rice Paddies under Heavy Metal Pollution across South China.	PLoS ONE	7(6)	e38858	2012		
35800	22685088	Kuwagata T., Ishikawa-Sakurai J., Hayashi H., Nagasuga K., Fukushi K., Ahamed A., Takasugi K., Katsuhara M., Murai-Hatano M.	Influence of low air-humidity and low root-temperature on water-uptake, growth and aquaporin expressions in rice plants.	Plant Cell Physiol.	53(8)	1418-31	2012		
35807	22672582	Bai H., Lan J.P., Gan Q., Wang X.Y., Hou M.M., Cao Y.H., Li L.Y., Liu L.J., Hao Y.J., Yin C.C., Wu L., Zhu L.H., Liu G.Z.	Identification and expression analysis of components involved in rice Xa21-mediated disease resistance signalling.	Plant Biol (Stuttg)	14(6)	914-22	2012		
35810	22660631	Sun J., Liu D., Wang J.Y., Ma D.R., Tang L., Gao H., Xu Z.J., Chen W.F.	The contribution of intersubspecific hybridization to the breeding of super-high-yielding japonica rice in northeast China.	Theor. Appl. Genet.	125(6)	1149-57	2012		
35811	22734689	Goel A., Gaur V.S., Arora S., Gupta S., Kumar A.	In silico analysis of expression data for identification of genes involved in spatial accumulation of calcium in developing seeds of rice.	OMICS	16(7-8)	402-13	2012		
35813	22693960	Zhang H., Ni L., Liu Y., Wang Y., Zhang A., Tan M., Jiang M.	The C(2) H(2) -type Zinc Finger Protein ZFP182 is Involved in Abscisic Acid-Induced Antioxidant Defense in Rice(F).	J Integr Plant Biol	54(7)	500-10	2012		
35817	22829719	Reddy V.S., Kumar Y.N., Raghavendra A., Sowjenya G., Kumar S., Ramyasree G., Reddy G.R.	In silico model of DSF synthase RpfF protein from Xanthomonas oryzae pv. Oryzae: a novel target for bacterial blight of rice disease.	Bioinformation	8(11)	504-7	2012		
35819	22676236	Arenhart R.A., DE Lima JC., Pedron M., Carvalho F.E., DA Silveira JA., Rosa S.B., Caverzan A., Andrade C.M., Sch?nemann M., Margis R., Margis-Pinheiro M.	Involvement of ASR genes in aluminium tolerance mechanisms in rice.	Plant Cell Environ.	36(1)	52-67	2013	ASR5,ASR1	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,OsAsr1, OsASR3, ASR3, Asr3
35820	22686401	Nandy S., Srivastava V.	Marker-free site-specific gene integration in rice based on the use of two recombination systems.	Plant Biotechnol. J.	10(8)	904-12	2012		
35821	22678666	Wang Z., Cheng J., Chen Z., Huang J., Bao Y., Wang J., Zhang H.	Identification of QTLs with main, epistatic and QTL X environment interaction effects for salt tolerance in rice seedlings under different salinity conditions.	Theor. Appl. Genet.	125(4)	807-15	2012		
35826	22835979	Ying J.Z., Gao J.P., Shan J.X., Zhu M.Z., Shi M., Lin H.X.	Dissecting the Genetic Basis of Extremely Large grain shape in Rice Cultivar 'JZ1560'.	J Genet Genomics	39(7)	325-33	2012		
35827	22747551	Toda T., Fujii S., Noguchi K., Kazama T., Toriyama K.	Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria.	Plant J.	72(3)	450-60	2012		
35828	22773759	Sassi A., Mieulet D., Khan I., Moreau B., Gaillard I., Sentenac H., Very A.A.	The rice monovalent cation transporter OsHKT2;4: revisited ionic selectivity.	Plant Physiol.	160(1)	498-510	2012		
35838	22892331	Chen D.H., Chyan C.L., Jiang P.L., Chen C.S., Tzen J.T.	The same oleosin isoforms are present in oil bodies of rice embryo and aleurone layer while caleosin exists only in those of the embryo.	Plant Physiol. Biochem.	60C	18-24	2012		
35839	22730086	Liu C.W., Hsu Y.K., Cheng Y.H., Yen H.C., Wu Y.P., Wang C.S., Lai C.C.	Proteomic analysis of salt-responsive ubiquitin-related proteins in rice roots.	Rapid Commun. Mass Spectrom.	26(15)	1649-60	2012		
35840	22884095	Peng Y., Zhang Y., Lv J., Zhang J., Li P., Shi X., Wang Y., Zhang H., He Z., Teng S.	Characterization and Fine Mapping of a Novel Rice Albino Mutant low temperature albino 1.	J Genet Genomics	39(8)	385-96	2012		
35842	22882653	Yang L., Hirose S., Takahashi H., Kawakatsu T., Takaiwa F.	Recombinant protein yield in rice seed is enhanced by specific suppression of endogenous seed proteins at the same deposit site.	Plant Biotechnol. J.	10(9)	1035-45	2012		
35843	22869603	Shi B., Ni L., Zhang A., Cao J., Zhang H., Qin T., Tan M., Zhang J., Jiang M.	OsDMI3 Is a Novel Component of Abscisic Acid Signaling in the Induction of Antioxidant Defense in Leaves of Rice.	Mol Plant	5(6)	1359-74	2012	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
35844	22906634	Yang L., Chen J.H., Xu T., Zhou A.S., Yang H.K.	Rice protein improves oxidative stress by regulating glutathione metabolism and attenuating oxidative damage to lipids and proteins in rats.	Life Sci.	91(11-12)	389-94	2012		
35845	22876968	Marathi B., Guleria S., Mohapatra T., Parsad R., Mariappan N., Kurungara V.K., Atwal S.S., Prabhu K.V., Singh N.K., Singh A.K.	QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativa L.).	BMC Plant Biol.	12(1)	137	2012		
35847	22903596	Tien Y.C., Chuankhayan P., Huang Y.C., Chen C.D., Alikhajeh J., Chang S.L., Chen C.J.	Crystal structures of rice (Oryza sativa) glyceraldehyde-3-phosphate dehydrogenase complexes with NAD and sulfate suggest involvement of Phe37 in NAD binding for catalysis.	Plant Mol. Biol.	80(4-5)	389-403	2012		
35848	22917912	Yang D.W., Lu L.B., Chen C.P., Zeng M.J., Zheng X.H., Ye N., Liu C.D., Ye X.F.	[Morphological characteristics and gene mapping of a palea degradation(PD2) mutant in rice].	Yi Chuan	34(8)	1064-72	2012		
35854	22794919	Crofts N., Abe K., Aihara S., Itoh R., Nakamura Y., Itoh K., Fujita N.	Lack of starch synthase IIIa and high expression of granule-bound starch synthase I synergistically increase the apparent amylose content in rice endosperm.	Plant Sci.	193-194	62-9	2012		
35855	22585748	Edwards J.M., Roberts T.H., Atwell B.J.	Quantifying ATP turnover in anoxic coleoptiles of rice (Oryza sativa) demonstrates preferential allocation of energy to protein synthesis.	J. Exp. Bot.	63(12)	4389-402	2012		
35858	22798060	Peng X., Hu Y., Tang X., Zhou P., Deng X., Wang H., Guo Z.	Constitutive expression of rice WRKY30 gene increases the endogenous jasmonic acid accumulation, PR gene expression and resistance to fungal pathogens in rice.	Planta	236(5)	1485-98	2012		
35859	22811433	Suzuki Y., Makino A.	Availability of Rubisco Small Subunit Up-Regulates the Transcript Levels of Large Subunit for Stoichiometric Assembly of Its Holoenzyme in Rice.	Plant Physiol.	160(1)	533-40	2012		
35862	22827940	Sahoo R.K., Gill S.S., Tuteja N.	pea DNA helicase 45 promotes salinity stress tolerance in IR64 rice with improved yield.	Plant Signal Behav	7(8)	1042-6	2012		
35863	22829206	Xu S., Wang L., Zhang B., Han B., Xie Y., Yang J., Zhong W., Chen H., Wang R., Wang N., Cui W., Shen W.	RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense.	Plant Mol. Biol.	80(2)	219-35	2012		
35864	22846333	Sakamoto T., Ohnishi T., Fujioka S., Watanabe B., Mizutani M.	Rice CYP90D2 and CYP90D3 catalyze C-23 hydroxylation of brassinosteroids in vitro.	Plant Physiol. Biochem.	58C	220-226	2012		
35865	22848448	Guan Q., Takano T., Liu S.	Genetic Transformation and Analysis of Rice OsAPx2 Gene in Medicago sativa.	PLoS ONE	7(7)	e41233	2012	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
35867	22771800	Chaen K., Noguchi J., Omori T., Kakuta Y., Kimura M.	Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose.	Biochem. Biophys. Res. Commun.	424(3)	508-11	2012		
35868	22646149	Huang P., Molina J., Flowers J.M., Rubinstein S., Jackson S.A., Purugganan M.D., Schaal B.A.	Phylogeography of Asian wild rice, Oryza rufipogon: a genome-wide view.	Mol. Ecol.	21(18)	4593-604	2012		
35871	22570632	Fernandez J., Wright J.D., Hartline D., Quispe C.F., Madayiputhiya N., Wilson R.A.	Principles of carbon catabolite repression in the rice blast fungus: Tps1, Nmr1-3, and a MATE-family pump regulate glucose metabolism during infection.	PLoS Genet.	8(5)	e1002673	2012		
35881	22614271	Ma J., Guan S.C., Zhang Z., Wang P.W.	Single- and double-SSR primer combined analyses in rice.	Genet. Mol. Res.	11(2)	1032-8	2012		
35883	22659434	Yang Z.M., Xie X.F., Huang X.B., Wang F.Q., Tong Z.J., Duan Y.L., Lan T., Wu W.R.	[Mapping of Sanming dominant genic male sterility gene in rice].	Yi Chuan	34(5)	615-20	2012		
35885	22610311	Rey A.A., Hocher A., Kwan A.H., Sunde M.	Backbone and sidechain (1)H, (13)C and (15)N chemical shift assignments of the hydrophobin MPG1 from the rice blast fungus Magnaporthe oryzae.	Biomol NMR Assign	7(1)	109-12	2013		
35886	22696296	Wang C.J., Nan G.L., Kelliher T., Timofejeva L., Vernoud V., Golubovskaya I.N., Harper L., Egger R., Walbot V., Cande W.Z.	Maize multiple archesporial cells 1 (MAC1), an ortholog of rice TDL1A, modulates cell proliferation and identity in early anther development.	Development	139(14)	2594-603	2012		
35889	22713349	Sani I.M., Iqbal S., Chan K.W., Ismail M.	Effect of Acid and Base Catalyzed Hydrolysis on the Yield of Phenolics and Antioxidant Activity of Extracts from Germinated Brown Rice (GBR).	Molecules	17(6)	7584-94	2012		
35891	22815975	Yang X., Wang F., Su J., Lu B.R.	Limited Fitness Advantages of Crop-Weed Hybrid Progeny Containing Insect-Resistant Transgenes (Bt/CpTI) in Transgenic Rice Field.	PLoS ONE	7(7)	e41220	2012		
35893	22763462	Zhang G.Y., Liu R.R., Xu G., Zhang P., Li Y., Tang K.X., Liang G.H., Liu Q.Q.	Increased alpha-tocotrienol content in seeds of transgenic rice overexpressing Arabidopsis gamma-tocopherol methyltransferase.	Transgenic Res.	22(1)	89-99	2013		
35895	22786641	Wu S.F., Yao Y., Huang J., Ye G.Y.	Characterization of a beta-adrenergic-like octopamine receptor from the rice stem borer (Chilo suppressalis).	J. Exp. Biol.	215(Pt 15)	2646-52	2012		
35899	22791138	Kov?cs G., S?gi L., Jacon G., Arinaitwe G., Busogoro J.P., Thiry E., Strosse H., Swennen R., Remy S.	Expression of a rice chitinase gene in transgenic banana ('Gros Michel', AAA genome group) confers resistance to black leaf streak disease.	Transgenic Res.	22(1)	117-30	2013		
35904	22624059	Chen M., Zeng H., Qiu D., Guo L., Yang X., Shi H., Zhou T., Zhao J.	Purification and characterization of a novel hypersensitive response-inducing elicitor from Magnaporthe oryzae that triggers defense response in rice.	PLoS ONE	7(5)	e37654	2012	AOS2,_,PR1A,_,PAL1,PR10A,NH1	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsEDS1, EDS1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
35907	22738964	Zheng S., Sanada H., Dohi H., Hirai S., Egashira Y.	Suppressive Effect of Modified Arabinoxylan from Rice Bran (MGN-3) on <small>D</small>-Galactosamine-Induced IL-18 Expression and Hepatitis in Rats.	Biosci. Biotechnol. Biochem.	76(5)	942-6	2012		
35910	22558413	Bhadauria V., Banniza S., Vandenberg A., Selvaraj G., Wei Y.	Peroxisomal alanine: glyoxylate aminotransferase AGT1 is indispensable for appressorium function of the rice blast pathogen, Magnaporthe oryzae.	PLoS ONE	7(4)	e36266	2012		
35919	22666467	Ma W., Zhang Z., Peng C., Wang X., Li F., Lin Y.	Exploring the midgut transcriptome and brush border membrane vesicle proteome of the rice stem borer, Chilo suppressalis (Walker).	PLoS ONE	7(5)	e38151	2012		
35924	22570148	Kim S.R., An G.	Bacterial transposons are co-transferred with T-DNA to rice chromosomes during Agrobacterium-mediated transformation.	Mol. Cells	33(6)	583-9	2012		
35926	22514089	Eun C.H., Takagi K., Park K.I., Maekawa M., Iida S., Tsugane K.	Activation and epigenetic regulation of DNA transposon nDart1 in rice.	Plant Cell Physiol.	53(5)	857-68	2012		
35932	22567170	Wang J., Li Y., Han Z., Zhu Y., Xie Z., Wang J., Liu Y., Li X.	Molecular characterization of a ryanodine receptor gene in the rice leaffolder, Cnaphalocrocis medinalis (Guen?e).	PLoS ONE	7(5)	e36623	2012		
35933	22558400	Xu Y., Zhou W., Zhou Y., Wu J., Zhou X.	Transcriptome and comparative gene expression analysis of Sogatella furcifera (Horv?th) in response to southern rice black-streaked dwarf virus.	PLoS ONE	7(4)	e36238	2012		
35934	22526504	Rose M.T., Rose T.J., Pariasca-Tanaka J., Yoshihashi T., Neuweger H., Goesmann A., Frei M., Wissuwa M.	Root metabolic response of rice (Oryza sativa L.) genotypes with contrasting tolerance to zinc deficiency and bicarbonate excess.	Planta	236(4)	959-73	2012		
35937	22721355	Lan Y., Su N., Shen Y., Zhang R., Wu F., Cheng Z., Wang J., Zhang X., Guo X., Lei C., Wang J., Jiang L., Mao L., Wan J.	Identification of novel MiRNAs and MiRNA expression profiling during grain development in indica rice.	BMC Genomics	13(1)	264	2012		
35939	22837707	Chan K.W., Khong N.M., Iqbal S., Ismail M.	Simulated Gastrointestinal pH Condition Improves Antioxidant Properties of Wheat and Rice Flours.	Int J Mol Sci	13(6)	7496-507	2012		
35942	22751304	Tanaka W., Toriba T., Ohomori Y., Hirano H.Y.	Formation of two florets within a single spikelet in the rice TONGARI-BOUSHI1 mutant.	Plant Signal Behav	7(7)	793-5	2012		
35943	22747959	Park S., Byeon Y., Kim Y.S., Back K.	Kinetic analysis of purified recombinant rice N-acetylserotonin methyltransferase and peak melatonin production in etiolated rice shoots.	J. Pineal Res.	54(2)	139-44	2013		
35945	22698279	Tan H., Liang W., Hu J., Zhang D.	MTR1 Encodes a Secretory fasciclin glycoprotein Required for Male Reproductive Development in Rice.	Dev. Cell	22(6)	1127-37	2012	OSC6,RAFTIN1,UDT1,TDR,MTR1,CYP704B2	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,Udt1, bHLH164, OsUDT1, OsbHLH164 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsMTR1,OsCYP704B2
35951	22684614	Khurana R., Kapoor S., Tyagi A.K.	Spatial and temporal activity of upstream regulatory regions of rice anther-specific genes in transgenic rice and Arabidopsis.	Transgenic Res.	22(1)	31-46	2013		
35952	22684798	Sarma K., Dehury B., Sahu J., Sarmah R., Sahoo S., Sahu M., Sen P., Modi M.K., Barooah M.	A comparative proteomic approach to analyse structure, function and evolution of rice chitinases: a step towards increasing plant fungal resistance.	J Mol Model	18(11)	4761-80	2012		
35954	22736145	Huy N.X., Kim S.H., Yang M.S., Kim T.G.	Immunogenicity of a neutralizing epitope from porcine epidemic diarrhea virus: M cell targeting ligand fusion protein expressed in transgenic rice calli.	Plant Cell Rep.	31(10)	1933-42	2012		
35957	22761858	Zhang Z., Lu Y., Zhai L., Deng R., Jiang J., Li Y., He Z., Peng X.	Glycolate oxidase Isozymes Are Coordinately Controlled by GLO1 and GLO4 in Rice.	PLoS ONE	7(6)	e39658	2012	GLO2,GLO3,GLO6,GLO4,GLO5,GLO1	GLO2, OsGLO2,GLO3, OsGLO3,GLO6, OsGLO6,GLO5, OsGLO5, OsGLO4, ,GLO4, OsGLO4, OsGLO5,GLO1, OsGLO1
35960	22730241	Li Y., Zhang Z., Nie Y., Zhang L., Wang Z.	Proteomic analysis of salicylic acid induced resistance to magnaporthe oryzae in susceptible and resistant rice.	Proteomics	12(14)	2340-54	2012		
35972	22763092	Vijayakumar K.R., Gowda L.R.	Temporal expression profiling of lipase during germination and rice caryopsis development.	Plant Physiol. Biochem.	57	245-53	2012		
35974	22750992	Singh I., Shah K.	In silico study of interaction between rice proteins enhanced disease susceptibility 1 and phytoalexin deficient 4, the regulators of salicylic acid signalling pathway.	J. Biosci.	37(3)	563-71	2012		
35976	22847900	Yokotani N., Ichikawa T., Kondou Y., Iwabuchi M., Matsui M., Hirochika H., Oda K.	Role of the rice transcription factor JAmyb in abiotic stress response.	J. Plant Res.	126(1)	131-9	2013		
35983	22798058	Yu C., Han F., Zhang J., Birchler J., Peterson T.	A transgenic system for generation of transposon Ac/Ds-induced chromosome rearrangements in rice.	Theor. Appl. Genet.	125(7)	1449-62	2012		
35984	22841976	Hasegawa H., Rahman M.M., Kadohashi K., Takasugi Y., Tate Y., Maki T., Rahman M.A.	Significance of the concentration of chelating ligands on Fe(3+)-solubility, bioavailability, and uptake in rice plant.	Plant Physiol. Biochem.	58C	205-211	2012		
35985	22852874	Berendzen K.W., Weiste C., Wanke D., Kilian J., Harter K., Dr?ge-Laser W.	Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription.	BMC Plant Biol.	12(1)	125	2012		
35986	22815860	Mittal D., Madhyastha D.A., Grover A.	Genome-Wide Transcriptional Profiles during Temperature and oxidative stress Reveal Coordinated Expression Patterns and Overlapping Regulons in Rice.	PLoS ONE	7(7)	e40899	2012		
35988	22915747	Kusumi K., Hirotsuka S., Kumamaru T., Iba K.	Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in slac1, a guard cell anion channel protein.	J. Exp. Bot.	63(15)	5635-44	2012	_,_,_,_,_,_,SLAC1,_,_,_	SLAC,SLAC,SLAC,STOMAGEN, OsEPFL9, EPFL9 ,SLAC,SLAC,OsSLAC1,HT1,SLAC,SLAC
35989	22900059	Oh Y., Franck W.L., Han S.O., Shows A., Gokce E., Muddiman D.C., Dean R.A.	Polyubiquitin Is Required for Growth, Development and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae.	PLoS ONE	7(8)	e42868	2012		
35996	22913653	Hong L., Tang D., Shen Y., Hu Q., Wang K., Li M., Lu T., Cheng Z.	MIL2 (MICROSPORELESS2) regulates early cell differentiation in the rice anther.	New Phytol.	196(2)	402-13	2012		
36013	22645600	Doroshenk K.A., Crofts A.J., Morris R.T., Wyrick J.J., Okita T.W.	RiceRBP: A Resource for Experimentally Identified RNA Binding Proteins in Oryza sativa.	Front Plant Sci	3	90	2012		
36020	22610504	Duan Y., Zhai C., Li H., Li J., Mei W., Gui H., Ni D., Song F., Li L., Zhang W., Yang J.	An efficient and high-throughput protocol for Agrobacterium-mediated transformation based on phosphomannose isomerase positive selection in Japonica rice (Oryza sativa L.).	Plant Cell Rep.	31(9)	1611-24	2012		
36021	22640001	Park S., Back K.	Melatonin promotes seminal root elongation and root growth in transgenic rice after germination.	J. Pineal Res.	53(4)	385-9	2012		
36023	22851681	Jiang S., Zhang X., Zhang F., Xu Z., Chen W., Li Y.	Identification and Fine Mapping of qCTH4, a Quantitative Trait Loci Controlling the chlorophyll content from Tillering to Heading in Rice(Oryza sativa L.).	J. Hered.	103(5)	720-6	2012		
36030	22811434	Kudo T., Makita N., Kojima M., Tokunaga H., Sakakibara H.	Cytokinin Activity of cis-Zeatin and Phenotypic Alterations Induced by Over-expression of Putative cis-Zeatin-O-glucosyltransferase in Rice.	Plant Physiol.	160(1)	319-31	2012	CZOGT1,CZOGT3,CZOGT2	OscZOGT1, cZOGT1,OscZOGT3, cZOGT3,OscZOGT2, cZOGT2
36032	22768325	Ke L., Liu R., Chu B., Yu X., Sun J., Jones B., Pan G., Cheng X., Wang H., Zhu S., Sun Y.	Cell suspension culture-mediated incorporation of the rice bel gene into transgenic cotton.	PLoS ONE	7(7)	e39974	2012	BEL	bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6
36034	22836167	Kim D.S., Lee K.J., Yim W.C., Kim J.B., Ha B.K., Kim S.H., Kang S.Y.	Transcriptional network analysis of the tryptophan-accumulating rice mutant during grain filling.	Mol. Genet. Genomics	287(9)	699-709	2012		
36038	22996677	Rana R.M., Dong S., Tang H., Ahmad F., Zhang H.	Functional analysis of OsHSBP1 and OsHSBP2 revealed their involvement in the heat shock response in rice (Oryza sativa L.).	J. Exp. Bot.	63(16)	6003-16	2012	CATA,_,_,_	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsHSBP2,OsHSBP1,OsPOD, prx11, Osprx11
36039	22987115	Huang T.L., Nguyen Q.T., Fu S.F., Lin C.Y., Chen Y.C., Huang H.J.	Transcriptomic changes and signalling pathways induced by arsenic stress in rice roots.	Plant Mol. Biol.	80(6)	587-608	2012		
36042	22971580	Xiao H.X., Lin Q.L., Liu G.Q., Yu F.X.	A comparative study of the characteristics of cross-linked, oxidized and dual-modified rice starches.	Molecules	17(9)	10946-57	2012		
36047	23020599	Hubbart S., Bird S., Lake J.A., Murchie E.H.	Does growth under elevated CO(2) moderate photoacclimation in rice?	Physiol Plant	148(2)	297-306	2013		
36049	22936328	Vaid N., Pandey P.K., Tuteja N.	Genome-wide analysis of Lectin receptor-like kinase family from Arabidopsis and rice.	Plant Mol. Biol.	80(4-5)	365-88	2012		
36051	22984395	Ou X., Zhang Y., Xu C., Lin X., Zang Q., Zhuang T., Jiang L., von Wettstein D., Liu B.	Transgenerational inheritance of modified DNA methylation patterns and enhanced tolerance induced by heavy metal stress in rice (Oryza sativa L.).	PLoS ONE	7(9)	e41143	2012		
36052	22984040	Hvistendahl M., Enserink M.	GM research. Charges fly, confusion reigns over golden rice study in Chinese children.	Science	337(6100)	1281	2012		
36053	23000158	Jeon E.H., Pak J.H., Kim M.J., Kim H.J., Shin S.H., Lee J.H., Kim D.H., Oh J.S., Oh B.J., Jung H.W., Chung Y.S.	Ectopic expression of ubiquitin-conjugating enzyme gene from wild rice, OgUBC1, confers resistance against UV-B radiation and Botrytis infection in Arabidopsis thaliana.	Biochem. Biophys. Res. Commun.	427(2)	309-14	2012		
36055	23240403	Ou Q.H., Zhao X.X., Zhou X.P., Liu G., Li L., Zhang L.	[Research on rice blast, corn and broad bean rust leaves by FTIR spectroscopy].	Guang Pu Xue Yu Guang Pu Fen Xi	32(9)	2389-92	2012		
36057	22967050	Hakata M., Kuroda M., Miyashita T., Yamaguchi T., Kojima M., Sakakibara H., Mitsui T., Yamakawa H.	Suppression of alpha-amylase genes improves quality of rice grain ripened under high temperature.	Plant Biotechnol. J.	10(9)	1110-7	2012		
36058	22994889	Detmann K.C., Ara?jo WL., Martins S.C., Sanglard L.M., Reis J.V., Detmann E., Rodrigues F?., Nunes-Nesi A., Fernie A.R., DaMatta F.M.	Silicon nutrition increases grain yield, which, in turn, exerts a feed-forward stimulation of photosynthetic rates via enhanced mesophyll conductance and alters primary metabolism in rice.	New Phytol.	196(3)	752-62	2012		
36059	22965749	Jang S.J., Wi S.J., Choi Y.J., An G., Park K.Y.	Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1.	Mol. Cells	34(3)	251-62	2012	_,LOGL9	LDC, PAP15, OsPAP15 ,LOGL9
36060	23012434	Zheng L., Yamaji N., Yokosho K., Ma J.F.	YSL16 is a phloem-localized transporter of the copper-nicotianamine complex that is responsible for copper distribution in rice.	Plant Cell	24(9)	3767-82	2012	COPT5,YSL16,ZIP4,FER2,HMA9,_,YSL2,YSL15,IRT1,COPT1	COPT5, OsCOPT5,OsYSL16, Os-YSL16, OsYs14 ,OsZIP4,OsFER2, OsFer2,OsHMA9 ,oshma9-1, oshma9-2, HMA9,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL2, Os-YSL2, OsYs6 ,OsYSL15, OsYs7,OsIRT1,COPT1, OsCOPT1
36061	22989945	Hsu Y.Y., Chao Y.Y., Kao C.H.	Methyl jasmonate-induced lateral root formation in rice: the role of heme oxygenase and calcium.	J. Plant Physiol.	170(1)	63-9	2013	YLC2,SE5	OsHO2, HO2, OsHO-2, HO-2,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
36062	22970232	Kim Y.J., Yeu S.Y., Park B.S., Koh H.J., Song J.T., Seo H.S.	Protein disulfide isomerase-like protein 1-1 controls endosperm development through regulation of the amount and composition of seed proteins in rice.	PLoS ONE	7(9)	e44493	2012	_,CP1	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,OsCP1, Os CP1
36063	23226082	Hori K., Kataoka T., Miura K., Yamaguchi M., Saka N., Nakahara T., Sunohara Y., Ebana K., Yano M.	Variation in heading date conceals quantitative trait loci for other traits of importance in breeding selection of rice.	Breed. Sci.	62(3)	223-34	2012		
36064	23139871	Zhu Y., Ellstrand N.C., Lu B.R.	Sequence polymorphisms in wild, weedy, and cultivated rice suggest seed-shattering locus sh4 played a minor role in Asian rice domestication.	Ecol Evol	2(9)	2106-13	2012		
36071	22750319	Dutt S., Gaur V.S., Taj G., Kumar A.	Differential induction of two different cystatin genes during pathogenesis of Karnal bunt (Tilletia indica) in wheat under the influence of jasmonic acid.	Gene	506(1)	253-60	2012	_,_,OC1,OC2	,,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1,Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2
36073	22930448	Huang J., Sun S., Xu D., Lan H., Sun H., Wang Z., Bao Y., Wang J., Tang H., Zhang H.	A TFIIIA-type zinc finger protein confers multiple abiotic stress tolerances in transgenic rice (Oryza sativa L.).	Plant Mol. Biol.	80(3)	337-50	2012	ZFP182,_,DREB1B,P5CS,LEA3-1,DREB1A	ZFP182/ZOS3-21, ZOS3-21,ZIURP1, Ub-CEP52-1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
36074	22899079	Wu H.C., Jinn T.L.	Oscillation regulation of Ca2+ /calmodulin and heat-stress related genes in response to heat stress in rice (Oryza sativa L.).	Plant Signal Behav	7(9)	1056-7	2012		
36075	23007447	Yang M., Qi W., Sun F., Zha X., Chen M., Huang Y., Feng Y.Q., Yang J., Luo X.	Overexpression of rice LRK1 restricts internode elongation by down-regulating OsKO2.	Biotechnol. Lett.	35(1)	121-8	2013		
36079	23226081	Iftekharuddaula K.M., Salam M.A., Newaz M.A., Ahmed H.U., Collard B.C., Septiningsih E.M., Sanchez D.L., Pamplona A.M., Mackill D.J.	Comparison of phenotypic versus marker-assisted background selection for the SUB1 QTL during backcrossing in rice.	Breed. Sci.	62(3)	216-22	2012		
36083	23116667	Chen Z., Pan Y., Wang S., Ding Y., Yang W., Zhu C.	Overexpression of a protein disulfide isomerase-like protein from Methanothermobacter thermoautotrophicum enhances mercury tolerance in transgenic rice.	Plant Sci.	197	10-20	2012		
36084	22989375	Wei X., Qiao W.H., Chen Y.T., Wang R.S., Cao L.R., Zhang W.X., Yuan N.N., Li Z.C., Zeng H.L., Yang Q.W.	Domestication and geographic origin of Oryza sativa in China: insights from multilocus analysis of nucleotide variation of O. sativa and O. rufipogon.	Mol. Ecol.	21(20)	5073-87	2012	_,_,_,WX1,SE1,EF1	ycf6,trnC, trnC(GCA), trnC-GCA,cox3, coxIII, cox3a, cox3b, cox3c,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
36086	22899054	Zhang J., Xu L., Wang F., Deng M., Yi K.	Modulating the root elongation by phosphate/nitrogen starvation in an OsGLU3 dependant way in rice.	Plant Signal Behav	7(9)	1144-5	2012		
36088	22990444	Kurusu T., Hamada H., Koyano T., Kuchitsu K.	Intracellular localization and physiological function of a rice Ca ( 2+) -permeable channel OsTPC1.	Plant Signal Behav	7(11)		2012		
36090	22956125	Yin H., Gao P., Liu C., Yang J., Liu Z., Luo D.	SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.	Planta	237(1)	15-27	2013	OSH15,SUI1,SUI3,SUI2	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1,OsSUI3,OsSUI2
36092	22933119	Duan Y., Xing Z., Diao Z., Xu W., Li S., Du X., Wu G., Wang C., Lan T., Meng Z., Liu H., Wang F., Wu W., Xue Y.	Characterization of OsMADS6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).	Plant Mol. Biol.	80(4-5)	429-42	2012	MFO1,MADS17,LHS1	OsMADS6, MADS6, OsMFO1,OsMADS17, NMADS3, RMADS213, nmads3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
36093	22985247	Nahar K., Kyndt T., Nzogela Y.B., Gheysen G.	Abscisic acid interacts antagonistically with classical defense pathways in rice-migratory nematode interaction.	New Phytol.	196(3)	901-13	2012		
36097	23001338	Huang D., Qiu Y., Zhang Y., Huang F., Meng J., Wei S., Li R., Chen B.	Fine mapping and characterization of BPH27, a brown planthopper resistance gene from wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	126(1)	219-29	2013	BPH27	Bph27
36101	22899082	Pu C.X., Sun Y.	Rice Crinkly4 receptor-like kinase positively regulates culm elongation and amino acid K532 is not essential for its kinase activity.	Plant Signal Behav	7(9)	1062-4	2012		
36102	22955680	Li Y., Zhang T., Shen Z.W., Xu Y., Li J.Y.	Overexpression of maize anthocyanin regulatory gene Lc affects rice fertility.	Biotechnol. Lett.	35(1)	115-9	2013		
36104	22945626	Lin C., Lin X., Hu L., Yang J., Zhou T., Long L., Xu C., Xing S., Qi B., Dong Y., Liu B.	Dramatic genotypic difference in, and effect of genetic crossing on, tissue culture-induced mobility of retrotransposon Tos17 in rice.	Plant Cell Rep.	31(11)	2057-63	2012		
36105	22996334	Matsuda S., Funabiki A., Furukawa K., Komori N., Koike M., Tokuji Y., Takamure I., Kato K.	Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments.	Mol. Genet. Genomics	287(10)	819-35	2012		
36107	23007553	Bang S.W., Park S.H., Jeong J.S., Kim Y.S., Jung H., Ha S.H., Kim J.K.	Characterization of the stress-inducible OsNCED3 promoter in different transgenic rice organs and over three homozygous generations.	Planta	237(1)	211-24	2013	NCED3	OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2
36111	23116677	Mittal D., Madhyastha D.A., Grover A.	Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.	Plant Sci.	197	102-13	2012	HSFA6,HSFA2A,HSF26,HSFA3	HSfA6, OsHsfA6, OsHsf-17, HSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,OsHsf26,HSfA3, OsHsfA3, OsHsf-07, HSF07
36112	22927256	Lanka S.K., Ottea J.A., Davis J.A., Hernandez A.B., Stout M.J.	Systemic effects of thiamethoxam and chlorantraniliprole seed treatments on adult Lissorhoptrus oryzophilus (Coleoptera: Curculionidae) in rice.	Pest Manag. Sci.	69(2)	250-6	2013		
36117	22939271	He H., Wang H., Fang C., Wu H., Guo X., Liu C., Lin Z., Lin W.	Barnyard grass stress up regulates the biosynthesis of phenolic compounds in allelopathic rice.	J. Plant Physiol.	169(17)	1747-53	2012		
36118	22868211	Sarhadi E., Bazargani M.M., Sajise A.G., Abdolahi S., Vispo N.A., Arceta M., Nejad G.M., Singh R.K., Salekdeh G.H.	Proteomic analysis of rice anthers under salt stress.	Plant Physiol. Biochem.	58	280-7	2012		
36120	23226080	Bosetti F., Montebelli C., Novembre A.D., Chamma H.P., Pinheiro J.B.	Genetic variation of germination cold tolerance in Japanese rice germplasm.	Breed. Sci.	62(3)	209-15	2012		
36121	22984180	Todaka D., Nakashima K., Maruyama K., Kidokoro S., Osakabe Y., Ito Y., Matsukura S., Fujita Y., Yoshiwara K., Ohme-Takagi M., Kojima M., Sakakibara H., Shinozaki K., Yamaguchi-Shinozaki K.	Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.	Proc. Natl. Acad. Sci. U.S.A.	109(39)	15947-52	2012	EXPA6,PIL13,EXPA4,EXPA2,EXPA1,ERF42,NAC6	OsEXPA6, OsEXP6, osaEXPa1.24,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
36123	22993695	Hayashi S., Wakasa Y., Takaiwa F.	Functional integration between defence and IRE1-mediated ER stress response in rice.	Sci Rep	2	670	2012		
36129	22960246	Luo L., Li W., Miura K., Ashikari M., Kyozuka J.	Control of tiller growth of rice by OsSPL14 and Strigolactones, which work in two independent pathways.	Plant Cell Physiol.	53(10)	1793-801	2012	D10,OSH1,WFP	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
36130	22973062	Wang J., Hu J., Qian Q., Xue H.W.	LC2 and OsVIL2 promote rice flowering by photoperoid-induced epigenetic silencing of OsLF.	Mol Plant	6(2)	514-27	2013	_,_,_,_,LC2,MADS50,_,SE1,_,MADS56,HD3A	OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsVIL1, VIL1, OsVIL2,OsVIL3, OsVIL4, VIL1,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06,OsLC2, OsVIL2, VIL2, OsVIL3,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,OsVIL4, OsVIL1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsLF, LF, OsbHLH119,OsMADS56, FDRMADS8, RMADS214,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
36131	23013464	Matsushita A., Inoue H., Goto S., Nakayama A., Sugano S., Hayashi N., Takatsuji H.	The nuclear ubiquitin proteasome degradation affects WRKY45 function in the rice defense program.	Plant J.			2012	GSTU4,SPL7,WRKY45,NH1,_,WRKY62	OsGSTU4,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsWRKY45,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10
36133	22899052	Macovei A., Vaid N., Tula S., Tuteja N.	A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress.	Plant Signal Behav	7(9)	1138-43	2012	_,_,_,_,_,GRP6,_,_	,,OsFBX234, OsFbox369, Os_F0191,OsRH26,OsABP, OsRH31,OsGRP6, GRRBP7,OsImpbeta1, OsImp beta 1,OsRH25, RH25
36134	22922198	Cai H., Lu Y., Xie W., Zhu T., Lian X.	Transcriptome response to nitrogen starvation in rice.	J. Biosci.	37(4)	731-47	2012		
36138	23028360	Nosaka M., Itoh J., Nagato Y., Ono A., Ishiwata A., Sato Y.	Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.	PLoS Genet.	8(9)	e1002953	2012	MIR820D,MIR820E,MIR820A,MIR820C,DRM2,MIR820B	miR820d, osa-miR820d, osa-MIR820d,miR820e, osa-miR820e, osa-MIR820e,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,OsDRM2, osdrm2, DRM2-1,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b
36139	23226086	Phan P.D., Kageyama H., Ishikawa R., Ishii T.	Estimation of the outcrossing rate for annual Asian wild rice under field conditions.	Breed. Sci.	62(3)	256-62	2012		
36140	23010196	Mohanty B., Herath V., Wijaya E., Yeo H.C., de Los Reyes BG., Lee D.Y.	Patterns of cis-element enrichment reveal potential regulatory modules involved in the transcriptional regulation of anoxia response of japonica rice.	Gene	511(2)	235-42	2012		
36142	23116672	You J., Hu H., Xiong L.	An Ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice.	Plant Sci.	197	59-69	2012	OAT,NAC6	OsOAT, delta-OAT,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
36143	23037947	Xue D.W., Jiang H., Hu J., Zhang X.Q., Guo L.B., Zeng D.L., Dong G.J., Sun G.C., Qian Q.	Characterization of physiological response and identification of associated genes under heat stress in rice seedlings.	Plant Physiol. Biochem.	61	46-53	2012		
36144	23024799	Duan J., Cai W.	OsLEA3-2, an abiotic stress induced gene of rice plays a key role in salt and drought tolerance.	PLoS ONE	7(9)	e45117	2012	LEA17	OsLEA17, OsLEA3-2, LEA3-2, LEA1
36146	23024213	Ding J., Shen J., Mao H., Xie W., Li X., Zhang Q.	RNA-directed DNA methylation is involved in regulating photoperiod-sensitive male sterility in rice.	Mol Plant	5(6)	1210-6	2012		
36147	22947243	Nadal A., Montero M., Company N., Badosa E., Messeguer J., Montesinos L., Montesinos E., Pla M.	Constitutive expression of transgenes encoding derivatives of the synthetic antimicrobial peptide BP100: impact on rice host plant fitness.	BMC Plant Biol.	12	159	2012		
36151	22960619	Pandey M.K., Rani N.S., Madhav M.S., Sundaram R.M., Varaprasad G.S., Sivaranjani A.K., Bohra A., Kumar G.R., Kumar A.	Different isoforms of starch-synthesizing enzymes controlling amylose and amylopectin content in rice (Oryza sativa L.).	Biotechnol. Adv.	30(6)	1697-706	2012		
36153	22947050	Francis S.E., Ersoy R.A., Ahn J.W., Atwell B.J., Roberts T.H.	Serpins in rice: protein sequence analysis, phylogeny and gene expression during development.	BMC Genomics	13	449	2012	_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsSRP-QKG, OrysaZ12,OsSRP-LGC, OrysaZ1,OsSRP-PLP, OrysaZ9,OsSRP-FRS, OrysaZxb,OsSRP-PTY, OrysaZ10,OsSRP-FAS, OrysaZ6c,OsSRP-FLC, OrysaZ2b,OsSRP-GMS, OrysaZ5,OsSRP-LLS, OrysaZ2a,OsSRP-GAA, OrysaZ6a,OsSRP-GRA, OrysaZ6b,OsSRP-PSG, OrysaZ8,OsSRP-LRS, OsSPN, OrysaZxa,OsSRP-PGY, OrysaZ11
36154	22960759	Kawakatsu T., Tamaoki F.	Reduction of 13 kD prolamins increases recombinant protein yield and recovery rate in rice endosperm.	Plant Signal Behav	7(11)		2012		
36155	22899049	Bhadauria V., Banniza S., Vandenberg A., Selvaraj G., Wei Y.	Alanine: glyoxylate aminotransferase 1 is required for mobilization and utilization of triglycerides during infection process of the rice blast pathogen, Magnaporthe oryzae.	Plant Signal Behav	7(9)	1206-8	2012		
36156	23053539	Zhou K., Ren Y., Lv J., Wang Y., Liu F., Zhou F., Zhao S., Chen S., Peng C., Zhang X., Guo X., Cheng Z., Wang J., Wu F., Jiang L., Wan J.	Young leaf chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice.	Planta	237(1)	279-92	2013	YGL98,_,_,_,ELL,V5B,YLC1,CAB1R,PSAA,CAB2R,FGL,PSBA	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,,OsChlH, ChlH, CHLH, OsCHLH,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,OsV5B,OsV5A, V5A,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,PsaA, psaA, PsAA1,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1
36168	22994911	Wang Y., Bai X., Yan C., Gui Y., Wei X., Zhu Q.H., Guo L., Fan L.	Genomic dissection of small RNAs in wild rice (Oryza rufipogon): lessons for rice domestication.	New Phytol.	196(3)	914-25	2012		
36172	23019369	Zhou G., Chen Y., Yao W., Zhang C., Xie W., Hua J., Xing Y., Xiao J., Zhang Q.	Genetic composition of yield heterosis in an elite rice hybrid.	Proc. Natl. Acad. Sci. U.S.A.	109(39)	15847-52	2012		
36176	22968716	Ding B., Bellizzi Mdel R., Ning Y., Meyers B.C., Wang G.L.	HDT701, a histone H4 deacetylase, negatively regulates plant innate immunity by modulating histone H4 acetylation of defense-related genes in rice.	Plant Cell	24(9)	3783-94	2012	_,_,HDT1,MAPK6,_,WRKY53,WRKY71	Spin1, SPIN1,Os-FLS2, FLS2, OsFLS2,OsHDT1, HDT701,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsSgt1, SGT1, OsSGT1, Os SGT1,OsWRKY53, WRKY-53,OsWRKY71, WRKY-71
36179	23029003	Wei Y., Shohag M.J., Yang X.	Biofortification and bioavailability of rice grain zinc as affected by different forms of foliar zinc fertilization.	PLoS ONE	7(9)	e45428	2012		
36186	23079822	Rahim H.A., Bhuiyan M.A., Lim L.S., Sabu K.K., Saad A., Azhar M., Wickneswari R.	Identification of quantitative trait loci for blast resistance in BC?F? and BC?F5 advanced backcross families of rice.	Genet. Mol. Res.	11(3)	3277-89	2012		
36191	22970151	Li W., Shao M., Zhong W., Yang J., Okada K., Yamane H., Zhang L., Wang G., Wang D., Xiao S., Chang S., Qian G., Liu F.	Ectopic expression of Hrf1 enhances bacterial resistance via regulation of diterpene phytoalexins, silicon and reactive oxygen species burst in rice.	PLoS ONE	7(9)	e43914	2012		
36197	23240408	Xin Y., Yang Z.F., Luo H.W., Yao L.M., Zhu P.	[Determination of translocatable matter of rice by near infrared reflectance spectroscopy].	Guang Pu Xue Yu Guang Pu Fen Xi	32(9)	2414-7	2012		
36199	23089365	Jiang J., Tan L., Zhu Z., Fu Y., Liu F., Cai H., Sun C.	Molecular evolution of the TAC1 gene from rice (Oryza sativa L.).	J Genet Genomics	39(10)	551-60	2012		
36200	22972350	Nakamura S., Machida K., Ohtsubo K.	Search for cell-wall-degrading enzymes of world-wide rice grains by PCR and their effects on the palatability of rice.	Biosci. Biotechnol. Biochem.	76(9)	1645-54	2012		
36202	22926745	Pyngrope S., Bhoomika K., Dubey R.S.	Reactive oxygen species, ascorbate-glutathione pool, and enzymes of their metabolism in drought-sensitive and tolerant indica rice (Oryza sativa L.) seedlings subjected to progressing levels of water deficit.	Protoplasma	250(2)	585-600	2013		
36209	22902687	Li S., Liu W., Zhang X., Liu Y., Li N., Li Y.	Roles of the Arabidopsis G protein gamma subunit AGG3 and its rice homologs GS3 and DEP1 in seed and organ size control.	Plant Signal Behav	7(10)	1357-9	2012		
36210	22994594	Li C.R., Liang D.D., Li J., Duan Y.B., Li H., Yang Y.C., Qin R.Y., Li L., Wei P.C., Yang J.B.	Unravelling mitochondrial retrograde regulation in the abiotic stress induction of rice ALTERNATIVE OXIDASE 1 genes.	Plant Cell Environ.	36(4)	775-88	2013	AOX1A,AOX1C,SOD4,SODCC1,SODA1,AOX1B	Ao1-1, AOX1a, OsAOX1a, AOX 1a,OsAOX1c,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,AOX1b, OsAOX1b
36211	23175467	Hu J., Cheng M., Gao G., Zhang Q., Xiao J., He Y.	Pyramiding and evaluation of three dominant brown planthopper resistance genes in the elite indica rice 9311 and its hybrids.	Pest Manag. Sci.	69(7)	802-8	2013		
36213	23031077	Helliwell E.E., Wang Q., Yang Y.	Transgenic rice with inducible ethylene production exhibits broad-spectrum disease resistance to the fungal pathogens Magnaporthe oryzae and Rhizoctonia solani.	Plant Biotechnol. J.	11(1)	33-42	2013	PR5,PR1B,ACS2	OsPR5, Pir2, PR-5, PR5-1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsACS2, Os-ACS2
36216	23053198	Gautam N., Verma P.K., Verma S., Tripathi R.D., Trivedi P.K., Adhikari B., Chakrabarty D.	Genome-wide identification of rice class I metallothionein gene: tissue expression patterns and induction in response to heavy metal stress.	Funct. Integr. Genomics	12(4)	635-47	2012		
36221	23109182	Zhang S., Haider I., Kohlen W., Jiang L., Bouwmeester H., Meijer A.H., Schluepmann H., Liu C.M., Ouwerkerk P.B.	Function of the HD-Zip I gene Oshox22 in ABA-mediated drought and salt tolerances in rice.	Plant Mol. Biol.	80(6)	571-85	2012		
36222	23202939	Sinha D.K., Nagaraju J., Tomar A., Bentur J.S., Nair S.	Pyrosequencing-Based Transcriptome Analysis of the Asian Rice Gall Midge Reveals Differential Response during Compatible and Incompatible Interaction.	Int J Mol Sci	13(10)	13079-103	2012		
36226	23070303	Singh K.K., Ghosh S.	Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions.	Plant Cell Rep.	32(2)	183-93	2013		
36227	23104764	Yamada S., Kano A., Tamaoki D., Miyamoto A., Shishido H., Miyoshi S., Taniguchi S., Akimitsu K., Gomi K.	Involvement of OsJAZ8 in jasmonate-induced resistance to bacterial blight in rice.	Plant Cell Physiol.	53(12)	2060-72	2012	_,TIFY11G,TIFY6A,TIFY11F,TIFY11E,EG2,TIFY11D,_,TIFY5,TIFY6B,_,TIFY10B,TIFY11C,TIFY11B,TIFY11A,_,TIFY9,TIFY10A,TIFY10C	OsSkp15,OsJAZ 15, OsJAZ15, OsTIFY11g,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ 14, OsJAZ14, OsTIFY11f,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188,OsJAZ8, OsJAZ 4, OsJAZ4, OsTIFY6b,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9 ,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
36229	23072989	Takahashi R., Bashir K., Ishimaru Y., Nishizawa N.K., Nakanishi H.	The role of heavy-metal ATPases, HMAs, in zinc and cadmium transport in rice.	Plant Signal Behav	7(12)		2012	HMA1,HMA8,_,HMA4,HMA6,HMA9,HMA5,HMA2,GCC7	OsHMA1, osHMA1,OsHMA6, osHMA8, HMA6,OsHMA4, HMA4,OsHMA7, osHMA4, HMA7,OsHMA5, osHMA6, HMA5,OsHMA9 ,oshma9-1, oshma9-2, HMA9,OsHMA8, osHMA5, HMA8,OsHMA2, osHMA2, OsHMA2v ,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3
36231	23048127	Fujita N., Hanashiro I., Suzuki S., Higuchi T., Toyosawa Y., Utsumi Y., Itoh R., Aihara S., Nakamura Y.	Elongated phytoglycogen chain length in transgenic rice endosperm expressing active starch synthase IIa affects the altered solubility and crystallinity of the storage alpha-glucan.	J. Exp. Bot.	63(16)	5859-72	2012		
36235	23122336	Jin G.H., Gho H.J., Jung K.H.	A systematic view of rice heat shock transcription factor family using phylogenomic analysis.	J. Plant Physiol.	170(3)	321-9	2013		
36236	23093362	Tang Z., Fan X., Li Q., Feng H., Miller A.J., Shen Q., Xu G.	Knockdown of a rice stelar nitrate transporter alters long-distance translocation but not root influx.	Plant Physiol.	160(4)	2052-63	2012	NRT2.1,_,NAR2.1,NRT2.4,NRT2.3,NRT2.2	OsNRT2.1, OsNRT2.2,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR,OsNAR2.1, OsNRT3.1A,OsNRT2.4,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.2, OsNRT2.1
36240	23061987	Lan A., Huang J., Zhao W., Peng Y., Chen Z., Kang D.	A salicylic acid-induced rice (Oryza sativa L.) transcription factor OsWRKY77 is involved in disease resistance of Arabidopsis thaliana.	Plant Biol (Stuttg)	15(3)	452-61	2013		
36242	23027943	Chiniquy D., Sharma V., Schultink A., Baidoo E.E., Rautengarten C., Cheng K., Carroll A., Ulvskov P., Harholt J., Keasling J.D., Pauly M., Scheller H.V., Ronald P.C.	XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.	Proc. Natl. Acad. Sci. U.S.A.	109(42)	17117-22	2012	_	XAX1, OsXAX1
36243	23086301	Thuc le V., Geelen D., Ky H., Ooi S.E., Napis S.B., Sinniah U.R., Namasivayam P.	Overexpression of the oil palm (Elaeis guineensis Jacq.) TAPETUM DEVELOPMENT1-like Eg707 in rice affects cell division and differentiation and reduces fertility.	Mol. Biol. Rep.	40(2)	1579-90	2013		
36244	23298446	Tomita M.	Combining two semidwarfing genes d60 and sd1 for reduced height in 'Minihikari', a new rice germplasm in the 'Koshihikari' genetic background.	Genet Res (Camb)	94(5)	235-44	2012		
36246	23094910	Jeong J.S., Kim Y.S., Redillas M.C., Jang G., Jung H., Bang S.W., Choi Y.D., Ha S.H., Reuzeau C., Kim J.K.	OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field.	Plant Biotechnol. J.	11(1)	101-14	2013		
36253	23053072	Kim I.S., Kim Y.S., Yoon H.S.	Expression of salt-induced 2-Cys peroxiredoxin from Oryza sativa increases stress tolerance and fermentation capacity in genetically engineered yeast Saccharomyces cerevisiae.	Appl. Microbiol. Biotechnol.	97(8)	3519-33	2013	_	BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
36254	23083684	Chen Y., Li F., Ma Y., Chong K., Xu Y.	Overexpression of OrbHLH001, a putative helix-loop-helix transcription factor, causes increased expression of AKT1 and maintains ionic balance under salt stress in rice.	J. Plant Physiol.	170(1)	93-100	2013		
36255	23108869	Zeng Y., Huang W., Su L., Wu G., Zhuang J., Zhao W., Hua H., Li J., Xiao N., Xiong Y.	Effects of elevated CO? on the nutrient compositions and enzymes activities of Nilaparvata lugens nymphs fed on rice plants.	Sci China Life Sci	55(10)	920-6	2012		
36257	22964359	Anuradha K., Agarwal S., Rao Y.V., Rao K.V., Viraktamath B.C., Sarla N.	Mapping QTLs and candidate genes for iron and zinc concentrations in unpolished rice of Madhukar~Swarna RILs.	Gene	508(2)	233-40	2012	_,ZIP6,ZIP7,MTP1,_,SIP2A,YSL4,NAS2,NAS3,YSL1,NRAMP1,NAS1,IRT1,ZIP8	,OsZIP6,OsZIP7,OsMTP1,OsAPT1, APRT, APT1,Sip2A, ARD 2, ARD2, OsARD2, OsARD, IDI1,OsYSL4, OsYs17 ,OsNAS2,OsNAS3,OsYSL1, OsYs1,OsNramp1, OsNRAMP1, OsNramp6,OsNAS1,OsIRT1,OsZIP8, OsZIP1
36258	23110212	Tsutsui T., Yamaji N., Huang C.F., Motoyama R., Nagamura Y., Ma J.F.	Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice.	PLoS ONE	7(10)	e48197	2012		
36259	23123597	Tanaka J., Nakanishi T., Shimoda H., Nakamura S., Tsuruma K., Shimazawa M., Matsuda H., Yoshikawa M., Hara H.	Purple rice extract and its constituents suppress endoplasmic reticulum stress-induced retinal damage in vitro and in vivo.	Life Sci.	92(1)	17-25	2013		
36260	23073696	Fukao T., Yeung E., Bailey-Serres J.	The submergence tolerance gene SUB1A delays leaf senescence under prolonged darkness through hormonal regulation in rice.	Plant Physiol.	160(4)	1795-807	2012		
36262	23112280	Du H., Wu N., Fu J., Wang S., Li X., Xiao J., Xiong L.	A GH3 family member, OsGH3-2, modulates auxin and abscisic acid levels and differentially affects drought and cold tolerance in rice.	J. Exp. Bot.	63(18)	6467-80	2012	_,_,GH3-9,RAA1,JAR3,GH3-7,GH3-10,TATC,SAUR39,GH3-4,JAR2,GH3-2,LC1,GH3-6,GH3-11,TLD1,_,IAA20,GH3-8,JAR1	OsLCYb, OsLCYbeta, OsLYCb, OsLCY,OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO,OsGH3-9,OsRAA1,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsGH3-7,OsGH3-10,OsTATC, OsTatC, TatC,OsSAUR39,OsGH3-4, OsGH3.4, GH3.4,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsGH3-2, OsGH3.2, GH3.2,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsGH3-6,OsGH3-11, OsGH3.11, GH3.11,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,OsPSY, PSY, OsPSY3, PSY3,OsIAA20,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
36263	23103994	Sun L., Zhang H., Li D., Huang L., Hong Y., Ding X.S., Nelson R.S., Zhou X., Song F.	Functions of rice NAC transcriptional factors, ONAC122 and ONAC131, in defense responses against Magnaporthe grisea.	Plant Mol. Biol.	81(1-2)	41-56	2013	ONAC131,ONAC122	NAC131,NAC122
36267	23076168	Chen Y.H., Chao Y.Y., Hsu Y.Y., Kao C.H.	Heme oxygenase is involved in H(2)O (2)-induced lateral root formation in apocynin-treated rice.	Plant Cell Rep.	32(2)	219-26	2013	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
36269	23059537	Wang C.Y., Shen R.F., Wang C., Wang W.	Root protein profile changes induced by Al exposure in two rice cultivars differing in Al tolerance.	J Proteomics	78	281-93	2013		
36272	23298447	Cheng L.R., Wang J.M., Ye G., Luo C.G., Xu J.L., Li Z.K.	Identification of stably expressed QTL for heading date using reciprocal introgression line and recombinant inbred line populations in rice.	Genet Res (Camb)	94(5)	245-53	2012		
36276	23086269	Kim S.H., Song M., Lee K.J., Hwang S.G., Jang C.S., Kim J.B., Kim S.H., Ha B.K., Kang S.Y., Kim D.S.	Genome-wide transcriptome profiling of ROS scavenging and signal transduction pathways in rice (Oryza sativa L.) in response to different types of ionizing radiation.	Mol. Biol. Rep.	39(12)	11231-48	2012		
36277	23073651	Yang S.Y., Gr?nlund M., Jakobsen I., Grotemeyer M.S., Rentsch D., Miyao A., Hirochika H., Kumar C.S., Sundaresan V., Salamin N., Catausan S., Mattes N., Heuer S., Paszkowski U.	Nonredundant regulation of rice arbuscular mycorrhizal symbiosis by two members of the PHOSPHATE TRANSPORTER1 gene family.	Plant Cell	24(10)	4236-51	2012	PT13,PT11	OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11
36280	23043988	Wakasa Y., Yasuda H., Takaiwa F.	Secretory type of recombinant Thioredoxin h induces ER stress in endosperm cells of transgenic rice.	J. Plant Physiol.	170(2)	202-10	2013		
36286	22902706	Sharma S., Mustafiz A., Singla-Pareek SL., Shankar Srivastava P., Sopory S.K.	Characterization of stress and methylglyoxal inducible triose phosphate isomerase (OscTPI) from rice.	Plant Signal Behav	7(10)	1337-45	2012	_	OscTPI
36287	23017837	Wang F., Wang Z., Zhu C.	Heteroexpression of the wheat Phytochelatin synthase gene (TaPCS1) in rice enhances cadmium sensitivity.	Acta Biochim. Biophys. Sin. (Shanghai)	44(10)	886-93	2012		
36288	22921008	Li S., Wan C., Hu C., Gao F., Huang Q., Wang K., Wang T., Zhu Y.	Mitochondrial mutation impairs cytoplasmic male sterility rice in response to H?O? stress.	Plant Sci.	195	143-50	2012		
36290	23066780	Wakasa Y., Takagi H., Hirose S., Yang L., Saeki M., Nishimura T., Kaminuma O., Hiroi T., Takaiwa F.	Oral immunotherapy with transgenic rice seed containing destructed Japanese cedar pollen allergens, Cry j 1 and Cry j 2, against Japanese cedar pollinosis.	Plant Biotechnol. J.	11(1)	66-76	2013		
36293	23202932	Imam M.U., Musa S.N., Azmi N.H., Ismail M.	Effects of white rice, brown rice and germinated brown rice on antioxidant status of type 2 diabetic rats.	Int J Mol Sci	13(10)	12952-69	2012		
36295	22902685	Arenhart R.A., Margis R., Margis-Pinheiro M.	The rice ASR5 protein: a putative role in the response to aluminum photosynthesis disturbance.	Plant Signal Behav	7(10)	1263-6	2012		
36296	23054004	Zhang H., Li L., Yu Y., Mo J., Sun L., Liu B., Li D., Song F.	Cloning and characterization of two rice long-chain base kinase genes and their function in disease resistance and cell death.	Mol. Biol. Rep.	40(1)	117-27	2013	_,_	OsLCBK1,OsLCBK2
36297	23090144	Fujino K., Yamanouchi U., Yano M.	Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation.	Theor. Appl. Genet.	126(3)	611-8	2013	GHD7,SE1,HD5	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
36298	22963226	Dai X., Ding Y., Tan L., Fu Y., Liu F., Zhu Z., Sun X., Sun X., Gu P., Cai H., Sun C.	LHD1, an allele of DTH8/Ghd8, controls late heading date in common wild rice (Oryza rufipogon).	J Integr Plant Biol	54(10)	790-9	2012	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
36299	22947213	Fernandez J., Wilson R.A.	Why no feeding frenzy? Mechanisms of nutrient acquisition and utilization during infection by the rice blast fungus Magnaporthe oryzae.	Mol. Plant Microbe Interact.	25(10)	1286-93	2012		
36300	23043463	Macovei A., Tuteja N.	microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.).	BMC Plant Biol.	12	183	2012	_,_,_,_,UCL4,MIR414,_,MIR164E,_,NAM,MIR408,_,TOGR1	OsDSHCT,OsDBH,RNAhA,CTD2,OsUCL4,miR414, osa-MIR414,DDX46,miR164e, osa-MIR164e,PRP5, OsRH42,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsABP, OsRH31,DDX47, OsRH10
36301	23107769	Yang L., Chen J.H., Xu T., Nie M.H., Yang H.K.	Hypocholesterolemic effect of rice protein is due to regulating hepatic cholesterol metabolism in adult rats.	Gene	512(2)	470-6	2013		
36302	23077584	Mao D., Chen C.	Colinearity and similar expression pattern of rice DREB1s reveal their functional conservation in the cold-responsive pathway.	PLoS ONE	7(10)	e47275	2012	ERF28,DREB1G,DREB1D,DREB1C,DREB1E,ERF133,DREB1F,DREB1B,DREB1A	OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
36304	23124348	Kim I.S., Kim Y.S., Yoon H.S.	Glutathione reductase from Oryza sativa increases acquired tolerance to abiotic stresses in a genetically modified Saccharomyces cerevisiae strain.	J. Microbiol. Biotechnol.	22(11)	1557-67	2012		
36306	23170937	Sun Y., Ward J.M.	Arg188 in rice sucrose transporter OsSUT1 is crucial for substrate transport.	BMC Biochem.	13	26	2012		
36307	23257077	Rawat N., Himabindu K., Neeraja C.N., Nair S., Bentur J.S.	Suppressive subtraction hybridization reveals that rice gall midge attack elicits plant-pathogen-like responses in rice.	Plant Physiol. Biochem.	63	122-30	2013	_	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10
36309	23020748	Chang Y., Long T., Wu C.	Effort and contribution of T-DNA Insertion mutant library for rice functional genomics research in China: review and perspective.	J Integr Plant Biol	54(12)	953-66	2012		
36311	23204500	Xie X., Yoneyama K., Kisugi T., Uchida K., Ito S., Akiyama K., Hayashi H., Yokota T., Nomura T., Yoneyama K.	Confirming stereochemical structures of strigolactones produced by rice and tobacco.	Mol Plant	6(1)	153-63	2013		
36315	23129483	Cabanos C., Ekyo A., Amari Y., Kato N., Kuroda M., Nagaoka S., Takaiwa F., Utsumi S., Maruyama N.	High-level production of lactostatin, a hypocholesterolemic peptide, in transgenic rice using soybean A1aB1b as carrier.	Transgenic Res.	22(3)	621-9	2013		
36319	23201414	Suzuki G., Nishiuchi C., Tsuru A., Kako E., Li J., Yamamoto M., Mukai Y.	Cellular localization of mitotic RAD21 with repetitive amino acid motifs in Allium cepa.	Gene	514(2)	75-81	2013	RAD21	OsRad21, OsRAD21-1
36320	23134977	Chinpongpanich A., Limruengroj K., Phean-o-pas S., Limpaseni T., Buaboocha T.	Expression analysis of calmodulin and calmodulin-like genes from rice, Oryza sativa L.	BMC Res Notes	5	625	2012	CML4,CML5,CML8,CML11,CML9,CML13,CML7,CML3,_,CAM61	OsCML4,OsCML5,OsCML8,OsCML11,OsCML9,OsCML13,OsCML7, OsSTKC,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,CaM61, OsCaM61, OsCML1, OsCML1d
36326	22940453	Hao Z., Wang L., Huang F., Tao R.	Expression patterns of defense genes in resistance of the panicles exserted from the caulis and from the tillers to neck blast in rice.	Plant Physiol. Biochem.	60	150-6	2012		
36328	23209649	Liu X., Li F., Tang J., Wang W., Zhang F., Wang G., Chu J., Yan C., Wang T., Chu C., Li C.	Activation of the jasmonic acid pathway by depletion of the hydroperoxide lyase OsHPL3 reveals crosstalk between the HPL and AOS branches of the oxylipin pathway in rice.	PLoS ONE	7(11)	e50089	2012		
36330	23017906	Wang D., Yuan S., Yin L., Zhao J., Guo B., Lan J., Li X.	A missense mutation in the transmembrane domain of CESA9 affects cell wall biosynthesis and plant growth in rice.	Plant Sci.	196	117-24	2012		
36331	23192363	Shigemitsu T., Masumura T., Morita S., Satoh S.	Accumulation of rice prolamin-GFP fusion proteins induces ER-derived protein bodies in transgenic rice calli.	Plant Cell Rep.	32(3)	389-99	2013		
36334	23208135	Ou S.J., Wang H.R., Chu C.C.	[Major domestication traits in Asian rice].	Yi Chuan	34(11)	1379-89	2012		
36335	23132948	Ishikawa S., Ishimaru Y., Igura M., Kuramata M., Abe T., Senoura T., Hase Y., Arao T., Nishizawa N.K., Nakanishi H.	Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice.	Proc. Natl. Acad. Sci. U.S.A.	109(47)	19166-71	2012	NRAMP5,NRAMP1	OsNRAMP5, OsNramp5,OsNramp1, OsNRAMP1, OsNramp6
36337	23164055	Chen H., Jiang S., Zheng J., Lin Y.	Improving panicle exsertion of rice cytoplasmic male sterile line by combination of artificial microRNA and artificial target mimic.	Plant Biotechnol. J.	11(3)	336-43	2013		
36340	23117720	Krattinger S.G., Jordan D.R., Mace E.S., Raghavan C., Luo M.C., Keller B., Lagudah E.S.	Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii.	Theor. Appl. Genet.	126(3)	663-72	2013		
36343	22895058	Shimizu T., Lin F., Hasegawa M., Nojiri H., Yamane H., Okada K.	The potential bioproduction of the pharmaceutical agent sakuranetin, a flavonoid phytoalexin in rice.	Bioengineered	3(6)	352-7			
36349	23185238	Li S.W., Yang H., Liu Y.F., Liao Q.R., Du J., Jin D.C.	Transcriptome and gene expression analysis of the rice leaf folder, Cnaphalocrosis medinalis.	PLoS ONE	7(11)	e47401	2012		
36353	23125910	Singh A., Singh V.K., Singh S.P., Pandian R.T., Ellur R.K., Singh D., Bhowmick P.K., Gopala Krishnan S., Nagarajan M., Vinod K.K., Singh U.D., Prabhu K.V., Sharma T.R., Mohapatra T., Singh A.K.	Molecular breeding for the development of multiple disease resistance in Basmati rice.	AoB Plants	2012	pls029	2012	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
36355	23202047	Pons R., Cornejo M.J., Sanz A.	Is ABA involved in tolerance responses to salinity by affecting cytoplasm ion homeostasis in rice cell lines?	Plant Physiol. Biochem.	62	88-94	2013		
36357	23204406	Park C.H., Chen S., Shirsekar G., Zhou B., Khang C.H., Songkumarn P., Afzal A.J., Ning Y., Wang R., Bellizzi M., Valent B., Wang G.L.	The Magnaporthe oryzae effector AvrPiz-t targets the RING E3 ubiquitin ligase APIP6 to suppress pathogen-associated molecular pattern-triggered immunity in rice.	Plant Cell	24(11)	4748-62	2012	KS4,_,NAC4,PAL1	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,APIP6,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
36358	23121287	Meng Y., Shao C., Wang H., Ma X., Chen M.	Construction of gene regulatory networks mediated by vegetative and reproductive stage-specific small RNAs in rice (Oryza sativa).	New Phytol.	197(2)	441-53	2013		
36359	23161853	Kwon Y.I., Abe K., Osakabe K., Endo M., Nishizawa-Yokoi A., Saika H., Shimada H., Toki S.	Overexpression of OsRecQl4 and/or OsExo1 enhances DSB-induced homologous recombination in rice.	Plant Cell Physiol.	53(12)	2142-52	2012	_,_	OsRecQl4, RecQl4, OsMed34_1, Med34_1 ,OsEXO1, OsExo1, EXO1
36360	23124325	Wu X., Tang D., Li M., Wang K., Cheng Z.	Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice.	Plant Physiol.	161(1)	317-29	2013	_	OsIDD14, LPA1 
36361	23220084	Teranishi M., Nakamura K., Furukawa H., Hidema J.	Identification of a phosphorylation site in cyclobutane pyrimidine dimer photolyase of rice.	Plant Physiol. Biochem.	63	24-9	2013		
36362	23261650	Morettini S., Gian? S., Nick P., Morello L., Breviario D.	Two anti-microtubular drugs for two differential responses: a rice cell line resistant to EPC remains susceptible to oryzalin.	Plant Physiol. Biochem.	63	107-14	2013		
36366	23166615	Zhao H., Ma H., Yu L., Wang X., Zhao J.	Genome-wide survey and expression analysis of amino acid transporter gene family in rice (Oryza sativa L.).	PLoS ONE	7(11)	e49210	2012	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PUT1,_,_,_,_,_,BH4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PUT2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PUT3,_,_,_,_,_,_	OsProT1 ,OsATL1,OsAAP11C, AAP11C, OsAAP11, AAP11,OsAAP12C, AAP12C, OsAAP2, AAP2,OsAAP10A, AAP10A, OsAAP17, AAP17,OsANT2 ,OsGAT3,OsATL13,OsATL8,OsCAT2,OsATL10,OsAAP10D, AAP10D, OsAAP6, AAP6, qPC1,OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3,OsLAT3,OsAAP10B, AAP10B, OsAAP4, AAP4,OsPUT1, PUT, OsLAT1 ,OsAAP10C, AAP10C, OsAAP5, AAP5,OsLHT8, LHT8, OsLHT3, LHT3,OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4,OsAAP7A, AAP7A, OsAAP13, AAP13,OsAAP11D, AAP11D, OsAAP12, AAP12,Bh4, OsATL14, ATL14,OsAAP11B, AAP11B, OsAAP15, AAP15,OsLAT6,OsCAT7,OsAAP12B, AAP12B, OsAAP18, AAP18,OsGAT1,OsGAT2,OsGAT4,OsANT1 ,OsANT3,OsATL2,OsATL5,OsATL6,OsATL7,OsATL9,OsCAT1 ,OsCAT3,OsCAT5,OsCAT8,OsANT4, ANT4, FCO8,OsProT3, ProT3,OsBAT1 ,OsCAT6,OsBAT2,OsBAT3,OsLAT2 ,OsLAT4,NAA, OsATL4 ,OsCAT9,OsCAT11,OsBAT4,OsBAT5,OsBAT7,OsPUT2, OsLAT7 ,Os CCC2, OsCCC2, OsLAT8,OsATL17, OsSTA19,OsATL16, OsSTA21,OsAAP6, AAP6, OsAAP1, AAP1,OsAAP11A, AAP11A, OsAAP16, AAP16,OsAAP11E, AAP11E, OsAAP8, AAP8,OsHT, OsLHT1, LHT1,OsLHT2, LHT2,OsLHT9, LHT9, OsLHT4, LHT4,OsLHT7, LHT7, OsLHT5, LHT5,OsATL15, ATL15,OsLAX5, OsAUX5, LAX5, AUX5,OsCAT4, CAT4,OsLAX2, OsRAU2, OsAUX3, LAX2, RAU2, AUX3 ,Os CCC1, OsCCC1, CCC1, OsLAT9 ,OsProT, ProT, OsProT2, ProT2,OsAAP11F, AAP11F, OsAAP7, AAP7, FCO7,OsATL12,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,OsAAP3, OsAAP3, OsAAP9, AAP9,OsAAP7C, AAP7C, OsAAP10, AAP10,OsCAT10,OsBAT6,OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 ,OsATL11, OsAux/LAX1, OSLAX1,OsATL3,OsAAP7B, AAP7B, OsAAP14, AAP14,OsAAP11G, AAP11G, OsAAP19, AAP19,OsLHT4A, LHT4A, OsLHT6, LHT6,OsAAP12A, AAP12A, OsAAP3, AAP3
36378	23010327	Steere A.N., Bobst C.E., Zhang D., Pettit S.C., Kaltashov I.A., Huang N., Mason A.B.	Biochemical and structural characterization of recombinant human serum transferrin from rice (Oryza sativa L.).	J. Inorg. Biochem.	116	37-44	2012		
36379	23265324	Zhao J., Wu C., Yuan S., Yin L., Sun W., Zhao Q., Zhao B., Li X.	Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development.	Plant Sci.	199-200	113-20	2013		
36384	23184051	Miah G., Rafii M.Y., Ismail M.R., Puteh A.B., Rahim H.A., Asfaliza R., Latif M.A.	Blast resistance in rice: a review of conventional breeding to molecular approaches.	Mol. Biol. Rep.	40(3)	2369-88	2013		
36387	23013333	Zhao F.Y., Han M.M., Zhang S.Y., Wang K., Zhang C.R., Liu T., Liu W.	Hydrogen peroxide-mediated growth of the root system occurs via auxin signaling modification and variations in the expression of cell-cycle genes in rice seedlings exposed to cadmium stress.	J Integr Plant Biol	54(12)	991-1006	2012		
36388	23132589	Hakata M., Kuroda M., Ohsumi A., Hirose T., Nakamura H., Muramatsu M., Ichikawa H., Yamakawa H.	Overexpression of a rice TIFY gene increases grain size through enhanced accumulation of carbohydrates in the stem.	Biosci. Biotechnol. Biochem.	76(11)	2129-34	2012	TIFY11B	OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b
36389	23262183	Liu C., Fukumoto T., Matsumoto T., Gena P., Frascaria D., Kaneko T., Katsuhara M., Zhong S., Sun X., Zhu Y., Iwasaki I., Ding X., Calamita G., Kitagawa Y.	Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination.	Plant Physiol. Biochem.	63	151-8	2013	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
36390	23116435	Negr?o S., Almadanim M.C., Pires I.S., Abreu I.A., Maroco J., Courtois B., Gregorio G.B., McNally K.L., Oliveira M.M.	New allelic variants found in key rice SalT-tolerance genes: an association study.	Plant Biotechnol. J.	11(1)	87-100	2013		
36393	23126685	Chen Y.L., Liang H.L., Ma X.L., Lou S.L., Xie Y.Y., Liu Z.L., Chen L.T., Liu Y.G.	An efficient rice mutagenesis system based on suspension-cultured cells.	J Integr Plant Biol	55(2)	122-30	2013		
36394	23203072	Chen X., Wang X., Jin N., Zhou Y., Huang S., Miao Q., Zhu Q., Xu J.	Endpoint visual detection of three genetically modified rice events by loop-mediated isothermal amplification.	Int J Mol Sci	13(11)	14421-33	2012		
36395	23161858	Nishikawa Y., Yamamoto H., Okegawa Y., Wada S., Sato N., Taira Y., Sugimoto K., Makino A., Shikanai T.	PGR5-dependent cyclic electron transport around PSI contributes to the redox homeostasis in chloroplasts rather than CO(2) fixation and biomass production in rice.	Plant Cell Physiol.	53(12)	2117-26	2012	_,PGR5	PGRL1,OsPGR5
36396	23150632	Zhang L., Cheng Z., Qin R., Qiu Y., Wang J.L., Cui X., Gu L., Zhang X., Guo X., Wang D., Jiang L., Wu C.Y., Wang H., Cao X., Wan J.	Identification and characterization of an epi-allele of FIE1 reveals a regulatory linkage between two epigenetic marks in rice.	Plant Cell	24(11)	4407-21	2012	SPW1,MADS17,MADS27,FIE2,IEZ1,FIE1,CLF	SPW1, spw1, MADS16, OsMADS16,OsMADS17, NMADS3, RMADS213, nmads3,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsFIE2, FIE, OsWD40-153,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsSET24, SDG711, EZ1, OsCLF
36398	23147796	Qi P., Lin Y.S., Song X.J., Shen J.B., Huang W., Shan J.X., Zhu M.Z., Jiang L., Gao J.P., Lin H.X.	The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3.	Cell Res.	22(12)	1666-80	2012		
36399	22527842	Yamamoto T., Nakamura A., Iwai H., Ishii T., Ma J.F., Yokoyama R., Nishitani K., Satoh S., Furukawa J.	Effect of silicon deficiency on secondary cell wall synthesis in rice leaf.	J. Plant Res.	125(6)	771-9	2012		
36402	23248202	Igarashi K., Kazama T., Motomura K., Toriyama K.	Whole genomic sequencing of RT98 mitochondria derived from Oryza rufipogon and northern blot analysis to uncover a cytoplasmic male sterility-associated gene.	Plant Cell Physiol.	54(2)	237-43	2013	_	orf113
36403	23228240	Wang Y., Guo H., Li H., Zhang H., Miao X.	Identification of transcription factors potential related to brown planthopper resistance in rice via microarray expression profiling.	BMC Genomics	13	687	2012		
36406	23259405	Lu T., Zhu C., Lu G., Guo Y., Zhou Y., Zhang Z., Zhao Y., Li W., Lu Y., Tang W., Feng Q., Han B.	Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice.	BMC Genomics	13	721	2012		
36408	23151797	Alvim M.N., Ramos F.T., Oliveira D.C., Isaias R.M., Franca M.G.	Aluminium localization and toxicity symptoms related to root growth inhibition in rice (Oryza sativa L.) seedlings.	J. Biosci.	37(6)	1079-88	2012		
36409	23251532	Yang X., Wu F., Lin X., Du X., Chong K., Gramzow L., Schilling S., Becker A., Thei?en G., Meng Z.	Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).	PLoS ONE	7(12)	e51435	2012		
36411	23246835	Sun H., Li Y., Feng S., Zou W., Guo K., Fan C., Si S., Peng L.	Analysis of five rice 4-coumarate:coenzyme A ligase enzyme activity and stress response for potential roles in lignin and flavonoid biosynthesis in rice.	Biochem. Biophys. Res. Commun.	430(3)	1151-6	2013	4CL1,4CL2,4CL4,4CL3,4CL5	Os4CL1, 4-CL, 4-CL. 1,Os4CL2,Os4CL4,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Os4CL5, 4CL3, Os4CL3
36413	23231430	Li Z., Hu Q., Zhou M., Vandenbrink J., Li D., Menchyk N., Reighard S., Norris A., Liu H., Sun D., Luo H.	Heterologous expression of OsSIZ1, a rice SUMO E3 ligase, enhances broad abiotic stress tolerance in transgenic creeping bentgrass.	Plant Biotechnol. J.	11(4)	432-45	2013		
36414	23231455	Fang Z., Xia K., Yang X., Grotemeyer M.S., Meier S., Rentsch D., Xu X., Zhang M.	Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice.	Plant Biotechnol. J.	11(4)	446-58	2013	PTR9	OsPTR9 OsNPF8.20, NPF8.20  
36416	23230509	Wakasa Y., Hayashi S., Ozawa K., Takaiwa F.	Multiple roles of the ER stress sensor IRE1 demonstrated by gene targeting in rice.	Sci Rep	2	944	2012	BZIP50,IRE1	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,IRE1, OsIRE1, OsIre1
36418	23203411	Ashkani S., Rafii M.Y., Rahim H.A., Latif M.A.	Genetic dissection of rice blast resistance by QTL mapping approach using an F(3) population.	Mol. Biol. Rep.	40(3)	2503-15	2013		
36421	23342502	Karasawa M.M., Vencovsky R., Silva C.M., Cardim D.C., Bressan Ede A., Oliveira G.C., Veasey E.A.	Comparison of microsatellites and isozymes in genetic diversity studies of Oryza glumaepatula (Poaceae) populations.	Rev. Biol. Trop.	60(4)	1463-78	2012		
36423	23267064	Yoshida A., Sasao M., Yasuno N., Takagi K., Daimon Y., Chen R., Yamazaki R., Tokunaga H., Kitaguchi Y., Sato Y., Nagamura Y., Ushijima T., Kumamaru T., Iida S., Maekawa M., Kyozuka J.	TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition.	Proc. Natl. Acad. Sci. U.S.A.	110(2)	767-72	2013	MADS47,MADS22,G1L5,MADS55	OsMADS47, OsMDP1, MDP, MDP1,OsMADS22, RMD1,OsG1L5, TAW1, OsTAW1,OsMADS55
36424	23270672	Takei N., Takahashi N., Takayanagi T., Ikeda A., Hashimoto K., Takagi M., Hamada T., Saitoh E., Ochiai A., Tanaka T., Taniguchi M.	Antimicrobial activity and mechanism of action of a novel cationic alpha-helical dodecapeptide, a partial sequence of cyanate lyase from rice.	Peptides	42C	55-62	2012		
36425	23236455	Wang Z., Chen Z., Cheng J., Lai Y., Wang J., Bao Y., Huang J., Zhang H.	QTL analysis of Na+ and K+ concentrations in roots and shoots under different levels of NaCl stress in rice (Oryza sativa L.).	PLoS ONE	7(12)	e51202	2012		
36430	23284907	Zhang J., Lu H., Gu W., Wu N., Zhou K., Hu Y., Xin Y., Wang C.	Early mixed farming of millet and rice 7800 years ago in the Middle Yellow River region, China.	PLoS ONE	7(12)	e52146	2012		
36432	23248203	Kahloul S., HajSalah El Beji I., Boulaflous A., Ferchichi A., Kong H., Mouzeyar S., Bouzidi M.F.	Structural, expression and interaction analysis of rice SKP1-like genes.	DNA Res.	20(1)	67-78	2013		
36435	23262107	Mei D.Y., Zhu Y.J., Fan Y.Y.	[Mapping QTL for rice milling and appearance quality traits in indica rice].	Yi Chuan	34(12)	1591-8	2012		
36436	23215967	Winkel A., Colmer T.D., Ismail A.M., Pedersen O.	Internal aeration of paddy field rice (Oryza sativa) during complete submergence---importance of light and floodwater O2.	New Phytol.	197(4)	1193-203	2013		
36439	23326259	Linh le H., Linh T.H., Xuan T.D., Ham le H., Ismail A.M., Khanh T.D.	Molecular Breeding to Improve salt tolerance of Rice (Oryza sativa L.) in the Red River Delta of Vietnam.	Int J Plant Genomics	2012	949038	2012		
36441	23242918	Kouzai Y., Kaku H., Shibuya N., Minami E., Nishizawa Y.	Expression of the chimeric receptor between the chitin elicitor receptor CEBiP and the receptor-like protein kinase Pi-d2 leads to enhanced responses to the chitin elicitor and disease resistance against Magnaporthe oryzae in rice.	Plant Mol. Biol.	81(3)	287-95	2013		
36443	23205731	Thurber C.S., Jia M.H., Jia Y., Caicedo A.L.	Similar traits, different genes? Examining convergent evolution in related weedy rice populations.	Mol. Ecol.	22(3)	685-98	2013		
36444	23341744	Liu S., Wang F., Gao L.J., Li J.H., Li R.B., Gao H.L., Deng G.F., Yang J.S., Luo X.J.	Genetic analysis and fine mapping of LH1 and LH2, a set of complementary genes controlling late heading in rice (Oryza sativa L.).	Breed. Sci.	62(4)	310-9	2012	LH1,LH2,HD3A,EF1,SE1	,,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
36448	23253602	Zhang Y., Zhang G., Xiao N., Wang L., Fu Y., Sun Z., Fang R., Chen X.	The rice 'nutrition response and root growth' (NRR) gene regulates heading date.	Mol Plant	6(2)	585-8	2013		
36449	23220695	Qin P., Tu B., Wang Y., Deng L., Quilichini T.D., Li T., Wang H., Ma B., Li S.	ABCG15 encodes an ABC transporter protein, and is essential for post-meiotic anther and pollen exine development in rice.	Plant Cell Physiol.	54(1)	138-54	2013	ABCG15	OsABCG15, PDA, PDA1, OsABCG15/PDA1
36451	23285082	Pan X., Zhang Q., Yan W., Jia M., Jackson A., Li X., Jia L., Huang B., Xu P., Correa-Victoria F., Li S.	Development of genetic markers linked to straighthead resistance through fine mapping in rice (Oryza sativa L.).	PLoS ONE	7(12)	e52540	2012		
36452	23083333	Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.	OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.	Plant J.	73(4)	566-78	2013	LFL2,EMF2B,LFL1,VP1,LC2,IDEF1,HD3A,EF1	OsLFL2,OsEMF2b, EMF2b,OsLFL1, OsSTA29, STA29,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsLC2, OsVIL2, VIL2, OsVIL3,OsLFL2, LFL2, OsIDEF1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
36453	23220823	Qin C., Li Y., Gan J., Wang W., Zhang H., Liu Y., Wu P.	Osdgl1, a homolog of an oligosaccharyltransferase complex subunit, is involved in N-glycosylation and root development in rice.	Plant Cell Physiol.	54(1)	129-37	2013	_	OsDGL1
36457	23202132	You J., Zong W., Li X., Ning J., Hu H., Li X., Xiao J., Xiong L.	The SNAC1-targeted gene OsSRO1c modulates stomatal closure and oxidative stress tolerance by regulating hydrogen peroxide in rice.	J. Exp. Bot.	64(2)	569-83	2013	_,_,_,_,TWI1,_	OsSRO1c, SRO1c,OsSRO1b, SRO1b,OsSRO1d, SRO1d,OsSRO1e, SRO1e,OsSRO1a, SRO1a, OsTWI1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1
36458	23251677	El-Kereamy A., Bi Y.M., Ranathunge K., Beatty P.H., Good A.G., Rothstein S.J.	The rice R2R3-MYB transcription factor OsMYB55 is involved in the tolerance to high temperature and modulates amino acid metabolism.	PLoS ONE	7(12)	e52030	2012	_,GAD3,_,GLN1;2	GAT1,OsGAD3,OsMYB55, OsMYB-2,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
36459	23221779	Trivedi D.K., Gill S.S., Yadav S., Tuteja N.	Genome-wide analysis of glutathione reductase (GR) genes from rice and Arabidopsis.	Plant Signal Behav	8(2)		2012		
36465	23262670	Wadekar H.B., Sahi V.P., Morita E.H., Abe S.	MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).	Planta	237(4)	1083-95	2013		
36467	23341747	Endo T., Yamaguchi M., Kaji R., Nakagomi K., Kataoka T., Yokogami N., Nakamura T., Ishikawa G., Yonemaru J., Nishio T.	Close linkage of a blast resistance gene, Pias(t), with a bacterial leaf blight resistance gene, Xa1-as(t), in a rice cultivar 'Asominori'.	Breed. Sci.	62(4)	334-9	2012		
36468	23376844	Zhang L., Shi J., Jiang D., Stupak J., Ou J., Qiu Q., An N., Li J., Yang D.	Expression and characterization of recombinant Human alpha-antitrypsin in transgenic rice seed.	J. Biotechnol.	164(2)	300-8	2012		
36471	23313793	Yadav D.K., Shukla D., Tuteja N.	Rice heterotrimeric G-protein alpha subunit (RGA1): in silico analysis of the gene and promoter and its upregulation under abiotic stress.	Plant Physiol. Biochem.	63	262-71	2013	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
36475	23210861	Feng B.H., Yang Y., Shi Y.F., Shen H.C., Wang H.M., Huang Q.N., Xu X., L? XG., Wu J.L.	Characterization and Genetic Analysis of a Novel Rice Spotted-leaf Mutant HM47 with Broad-spectrum Resistance to Xanthomonas oryzae pv. oryzae.	J Integr Plant Biol	55(5)	473-83	2013	POX22.3,PR10A,PAL1,POX3006,SPLHM47	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,POX3006, prx114, PO-C1, POC-1, POC1,splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1
36477	23220350	Shao G., Tang S., Chen M., Wei X., He J., Luo J., Jiao G., Hu Y., Xie L., Hu P.	Haplotype variation at Badh2, the gene determining fragrance in rice.	Genomics	101(2)	157 162	2013		
36479	23300690	Tang X., Han F., Zhao K., Xu Y., Wu X., Wang J., Jiang L., Shi W.	A 90-day dietary toxicity study of genetically modified rice T1C-1 expressing Cry1C protein in Sprague Dawley rats.	PLoS ONE	7(12)	e52507	2012		
36480	23256151	Zhang H., Xu C., He Y., Zong J., Yang X., Si H., Sun Z., Hu J., Liang W., Zhang D.	Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.	Proc. Natl. Acad. Sci. U.S.A.	110(1)	76-81	2013	_,MST8,_,CSA	OsMYB8,OsMST8, OSMST8,OsMyb5, OSMYB5, MYB5,csa
36483	23285081	Zhang Z.H., Wang K., Guo L., Zhu Y.J., Fan Y.Y., Cheng S.H., Zhuang J.Y.	Pleiotropism of the photoperiod-insensitive allele of Hd1 on heading date, plant height and yield traits in rice.	PLoS ONE	7(12)	e52538	2012		
36490	23233857	Xu Y., Zhou X.	Role of Rice Stripe Virus NSvc4 in Cell-to-Cell Movement and Symptom Development in Nicotiana benthamiana.	Front Plant Sci	3	269	2012		
36498	23135854	Batlang U., Baisakh N., Ambavaram M.M., Pereira A.	Phenotypic and physiological evaluation for drought and salinity stress responses in rice.	Methods Mol. Biol.	956	209-25	2013		
36499	23469243	Huda K.M., Banu M.S., Pathi K.M., Tuteja N.	Reproductive organ and vascular specific promoter of the rice plasma membrane Ca2+ATPase mediates environmental stress responses in plants.	PLoS ONE	8(3)	e57803	2013	ACA11	osACA11, OsACA6, OsACA5, OsPM4ATP8
36500	23457591	Zhou W.W., Liang Q.M., Xu Y., Gurr G.M., Bao Y.Y., Zhou X.P., Zhang C.X., Cheng J., Zhu Z.R.	Genomic insights into the Glutathione S-transferase gene family of two rice planthoppers, Nilaparvata lugens (St?l) and Sogatella furcifera (Horv?th) (Hemiptera: Delphacidae).	PLoS ONE	8(2)	e56604	2013		
36501	23349140	Suzuki Y., Makino A.	Translational downregulation of RBCL is operative in the coordinated expression of Rubisco genes in senescent leaves in rice.	J. Exp. Bot.	64(4)	1145-52	2013		
36503	23637814	Su Z.Z., Mao L.J., Li N., Feng X.X., Yuan Z.L., Wang L.W., Lin F.C., Zhang C.L.	Evidence for Biotrophic Lifestyle and Biocontrol Potential of Dark Septate Endophyte Harpophora oryzae to Rice blast disease.	PLoS ONE	8(4)	e61332	2013	WRKY45	OsWRKY45
36504	23244200	Wang Y.D., Wang X., Ngai S.M., Wong Y.S.	Comparative proteomics analysis of selenium responses in selenium-enriched rice grains.	J. Proteome Res.	12(2)	808-20	2013		
36505	23315878	Jiang H., Zhang J., Wang J., Xia M., Zhu S., Cheng B.	RNA interference-mediated silencing of the starch branching enzyme gene improves amylose content in rice.	Genet. Mol. Res.	12(AOP)		2013		
36506	23385589	Niu N., Liang W., Yang X., Jin W., Wilson Z.A., Hu J., Zhang D.	EAT1 promotes tapetal cell death by regulating aspartic proteases during male reproductive development in rice.	Nat Commun	4	1445	2013	EAT1,_,GAMYB,_,PTC1,API5,CP1,TDR,UDT1,AP37 ,MSP1	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsAP25, Radc1, AP25,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsAP19,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1,API5, Os API5, OsAPI5,OsCP1, Os CP1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsAP37,Msp1, OsMSP1
36507	23333965	Hirose F., Inagaki N., Takano M.	Differences and similarities in the photoregulation of gibberellin metabolism between rice and dicots.	Plant Signal Behav	8(3)		2013	SD1,PHYB,GA2OX6,GA2OX5,PHYA,GA2OX7,GA20OX4,SBI,PHYC,_,_,GA2OX9,_	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,phyB, PHYB1, OsPHYB, OsphyB,OsGA2ox6,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsGA2ox7,OsGA20ox4, ga20ox4,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4,OsPHYC, OsPHYCa, OsPHYCb,OsCRY1b, OsCRY2, CRY1b, CRY1 ,OsCRY2, CRY2,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsCRY1a, OsCRY1, CRY1a, CRY2 
36508	23322345	Luan J., Liu T., Luo W., Liu W., Peng M., Li W., Dai X., Liang M., Chen L.	Mitochondrial DNA genetic polymorphism in thirteen rice cytoplasmic male sterile lines.	Plant Cell Rep.	32(4)	545-54	2013	RPS2,_,_,RPS1,_,_	rps2, rps2a, rps2b,ORF79, orf79,orf224, orf224a, orf224b,rps1, rps1a, rps1b, rps1-1,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,cox3, coxIII, cox3a, cox3b, cox3c
36510	23577102	Do P.T., Degenkolbe T., Erban A., Heyer A.G., Kopka J., K?hl KI., Hincha D.K., Zuther E.	Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress.	PLoS ONE	8(4)	e60325	2013		
36511	23638363	Chern M., Bai W., Chen X., Canlas P.E., Ronald P.C.	Reduced expression of Glycolate oxidase leads to enhanced disease resistance in rice.	PeerJ	1	e28	2013		
36518	23555750	Mou S., Liu Z., Guan D., Qiu A., Lai Y., He S.	Functional Analysis and Expressional Characterization of Rice Ankyrin Repeat-Containing Protein, OsPIANK1, in Basal Defense against Magnaporthe oryzae Attack.	PLoS ONE	8(3)	e59699	2013	_,WRKY13,AOS2,NH1,PAL1,PR1B,PR5	OsPIANK1,OsWRKY13,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR5, Pir2, PR-5, PR5-1
36520	23319637	Magome H., Nomura T., Hanada A., Takeda-Kamiya N., Ohnishi T., Shinma Y., Katsumata T., Kawaide H., Kamiya Y., Yamaguchi S.	CYP714B1 and CYP714B2 encode gibberellin 13-oxidases that reduce gibberellin activity in rice.	Proc. Natl. Acad. Sci. U.S.A.	110(5)	1947-52	2013	CYP714B2,EUI1,CYP714C3,CYP714B1,CYP714C1,CYP714C2	CYP714B2,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,CYP714C3,CYP714B1,CYP714C1,CYP714C2
36525	23415326	Saad A.S., Li X., Li H.P., Huang T., Gao C.S., Guo M.W., Cheng W., Zhao G.Y., Liao Y.C.	A rice stress-responsive NAC gene enhances tolerance of transgenic wheat to drought and salt stresses.	Plant Sci.	203-204	33-40	2013		
36528	23291755	Lang G.H., Kagiya Y., Ohnishi-Kameyama M., Kitta K.	Evaluation of extraction solutions for biochemical analyses of the proteins in rice grains.	Biosci. Biotechnol. Biochem.	77(1)	126-31	2013		
36529	23403394	Huang S., Shingaki-Wells RN., Taylor N.L., Millar A.H.	The rice mitochondria proteome and its response during development and to the environment.	Front Plant Sci	4	16	2013		
36530	23308094	Xie G., Yang B., Xu Z., Li F., Guo K., Zhang M., Wang L., Zou W., Wang Y., Peng L.	Global identification of multiple OsGH9 family members and their involvement in cellulose crystallinity modification in rice.	PLoS ONE	8(1)	e50171	2013	CEL9A,GH9B6,GH9B17,GH9C1,GH9B11,GH9B13,GH9C2,GH9C4,GH9B10,GH9B8,GH9B12,GH9B2,GH9B14,GH9B4,GH9A3,_,GH9B9,GH9B5,GH9B7,GH9B18,GH9B1,CESA3,CEL9D,CESA1,_,GH9B16,GH9B3,CESA8	OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A ,OsGH9B6,OsGH9B17,OsGH9C1,OsGH9B11,OsGH9B13,OsGH9C2,OsGH9C4,OsGH9B10,OsGH9B8,OsGH9B12,OsGH9B2,OsGH9B14,OsGH9B4,OsGH9A3,OsGLU3, OsGH9A2, GLU3, GH9A2,OsGH9B9,OsGH9B5,OsGH9B7,OsGH9B18,OsGH9B1,OsCesA3, OsCESA3, OS_CESA03,OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsGH9B15, OsGLU14, GH9B15, GLU14,OsGH9B16,OsGH9B3,OsCesA8, OsCESA8, OS_CESA08, CesA8
36531	23526955	Zhang X., Han D., Zeng Q., Duan Y., Yuan F., Shi J., Wang Q., Wu J., Huang L., Kang Z.	Fine Mapping of Wheat Stripe Rust Resistance Gene Yr26 Based on Collinearity of Wheat with Brachypodium distachyon and Rice.	PLoS ONE	8(3)	e57885	2013		
36533	23292878	Sharma R., De Vleesschauwer D., Sharma M.K., Ronald P.C.	Recent advances in dissecting stress-regulatory crosstalk in rice.	Mol Plant	6(2)	250-60	2013		
36535	23299421	Liu B., Li J.F., Ao Y., Li Z., Liu J., Feng D., Qi K., He Y., Zeng L., Wang J., Wang H.B.	OsLYP4 and OsLYP6 play critical roles in rice defense signal transduction.	Plant Signal Behav	8(2)		2013	_,_,_,CEBiP	OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,LYP4, Os-LYP4, OsLYP4,LYP6, Os-LYP6, OsLYP6,CEBIP, Os-LYP1, LYP1, OsCEBiP
36536	23220939	Luo Q., Tang D., Wang M., Luo W., Zhang L., Qin B., Shen Y., Wang K., Li Y., Cheng Z.	The Role of Osmsh5 in Crossover Formation during Rice Meiosis.	Mol Plant	6(3)	729-42	2013	RMC1,PAIR2,ZEP1,_,_,_,PAIR3,_,RAD21-4	MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,Pair2, OsPAIR2, OsASY1,OsZEP1,HEI10, HEI10A, HEI10B, OsHEI10,OsAM1, SWI1, Osam1, AM1,OsZIP4, ZIP4, SPO22,,OsMSH5, MSH5,OsRad21-4, REC8, OsREC8, OsRAD21-4
36537	23536906	Zhang T., Zhao X., Huang L., Liu X., Zong Y., Zhu L., Yang D., Fu B.	Tissue-specific transcriptomic profiling of Sorghum propinquum using a rice genome array.	PLoS ONE	8(3)	e60202	2013		
36538	23613915	Qin P., Wang Y., Li Y., Ma B., Li S.	Analysis of cytoplasmic effects and fine-mapping of a genic male sterile line in rice.	PLoS ONE	8(4)	e61719	2013		
36539	23383126	Chen H., Kobayashi K., Miyao A., Hirochika H., Yamaoka N., Nishiguchi M.	Both OsRecQ1 and OsRDR1 are required for the production of small RNA in response to DNA-damage in rice.	PLoS ONE	8(1)	e55252	2013		
36540	22927237	Qi Y., Chen L., He X., Jin Q., Zhang X., He Z.	Marker-free, tissue-specific expression of Cry1Ab as a safe transgenic strategy for insect resistance in rice plants.	Pest Manag. Sci.	69(1)	135-41	2013		
36541	23386349	Katsube-Tanaka T.	Capillary electrophoresis of seed storage proteins: the separation and identification of microheterogeneous rice glutelin subunits.	Methods Mol. Biol.	984	253-61	2013		
36549	23349143	Adachi S., Nakae T., Uchida M., Soda K., Takai T., Oi T., Yamamoto T., Ookawa T., Miyake H., Yano M., Hirasawa T.	The mesophyll anatomy enhancing CO2 diffusion is a key trait for improving rice photosynthesis.	J. Exp. Bot.	64(4)	1061-72	2013		
36550	23371950	Ohmori Y., Tanaka W., Kojima M., Sakakibara H., Hirano H.Y.	WUSCHEL-RELATED HOMEOBOX4 is involved in meristem maintenance and is negatively regulated by the CLE gene FCP1 in rice.	Plant Cell	25(1)	229-41	2013	_,WOX1,QHB,_,WOX4,FON2,OSH1,NAL2,GL1,WOX5	FCP1, FCP1/Os CLE402, Os CLE402, OsCLE402,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1,OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,FCP2,OsWOX4, Os WOX4,fon2, FON4, OsFON4, FON2/FON4, TG1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L
36552	23292790	Zhou M., Li D., Li Z., Hu Q., Yang C., Zhu L., Luo H.	Constitutive expression of a miR319 gene alters plant development and enhances salt and drought tolerance in transgenic creeping bentgrass.	Plant Physiol.	161(3)	1375-91	2013	_,_,MIR319A,_,_,_	OsTCP14,OsPCF7, PCF7,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsPCF5, PCF5,OsPCF8, PCF8,OsPCF6, PCF6
36559	23344857	Wang Q., Li J., Hu L., Zhang T., Zhang G., Lou Y.	OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice.	Plant Cell Rep.	32(7)	1075-84	2013		
36560	23319643	Cui X., Jin P., Cui X., Gu L., Lu Z., Xue Y., Wei L., Qi J., Song X., Luo M., An G., Cao X.	Control of transposon activity by a histone H3K4 demethylase in rice.	Proc. Natl. Acad. Sci. U.S.A.	110(5)	1953-8	2013	KARMA,LINE1,_	Karma,LINE1,JMJ703
36562	23329372	Ho S.L., Huang L.F., Lu C.A., He S.L., Wang C.C., Yu S.P., Chen J., Yu S.M.	Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings.	Plant Mol. Biol.	81(4-5)	347-61	2013		
36563	23299424	Onda Y., Kawagoe Y.	P5-type sulfhydryl oxidoreductase promotes the sorting of proteins to protein body I in rice endosperm cells.	Plant Signal Behav	8(2)		2013		
36564	23356873	Huang S., Jacoby R.P., Shingaki-Wells RN., Li L., Millar A.H.	Differential induction of mitochondrial machinery by light intensity correlates with changes in respiratory metabolism and photorespiration in rice leaves.	New Phytol.	198(1)	103-15	2013		
36566	23320078	Lee H.Y., Seo J.S., Cho J.H., Jung H., Kim J.K., Lee J.S., Rhee S., Do Choi Y.	Oryza sativa COI homologues restore jasmonate signal transduction in Arabidopsis COI1-1 mutants.	PLoS ONE	8(1)	e52802	2013	_,TIFY8,TIFY11D,TIFY10B,_,TIFY6A,TIFY6B,TIFY11A,TIFY11C,EG2,TIFY9,TIFY11B,TIFY10C,_,TIFY10A	OsCOI2,OsJAZ12, OsTIFY8, OsSTA75,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ8, OsJAZ 4, OsJAZ4, OsTIFY6b,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9 ,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A
36567	23303719	He Q., Chen L., Xu Y., Yu W.	Identification of centromeric and telomeric DNA-binding proteins in rice.	Proteomics	13(5)	826-32	2013	_	
36568	23544090	Wei T., Ou B., Li J., Zhao Y., Guo D., Zhu Y., Chen Z., Gu H., Li C., Qin G., Qu L.J.	Transcriptional Profiling of Rice Early Response to Magnaporthe oryzae Identified OsWRKYs as Important Regulators in Rice Blast Resistance.	PLoS ONE	8(3)	e59720	2013		
36574	23463009	Guo S., Xu Y., Liu H., Mao Z., Zhang C., Ma Y., Zhang Q., Meng Z., Chong K.	The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.	Nat Commun	4	1566	2013	MADS57,MIR444A,D14,FC1	OsMADS57, MADS-57,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
36576	23324168	Tsuji H., Nakamura H., Taoka K., Shimamoto K.	Functional diversification of FD transcription factors in rice, components of florigen activation complexes.	Plant Cell Physiol.	54(3)	385-97	2013	HD3A,BZIP56,BZIP69,BZIP54,BZIP24,BZIP77,BZIP55,GF14B,RAP1A	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsbZIP56, OsFD5,OsbZIP69, OsFD4,OsbZIP54, OsFD6,OsbZIP24, OsFD3, FD3,OsbZIP77, OsFD1, FD1,OsbZIP55, OsFD2,GF14b, OsGF14b, 14-3-3b,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
36578	23351381	Liu A.L., Zou J., Liu C.F., Zhou X.Y., Zhang X.W., Luo G.Y., Chen X.B.	Over-expression of OsHsfA7 enhanced salt and drought tolerance in transgenic rice.	BMB Rep	46(1)	31-6	2013		
36579	23453017	Zhao X., Li L.	Comparative analysis of microRNA promoters in Arabidopsis and rice.	Genomics, proteomics & bioinformatics	11(1)	56-60	2013		
36581	23134061	Shi M., Xie Y., Zheng Y., Wang J., Su Y., Yang Q., Huang S.	Oryza sativa actin-interacting protein 1 is required for rice growth by promoting actin turnover.	Plant J.	73(5)	747-60	2013		
36582	23596448	Chiniquy D., Varanasi P., Oh T., Harholt J., Katnelson J., Singh S., Auer M., Simmons B., Adams P.D., Scheller H.V., Ronald P.C.	Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis.	Front Plant Sci	4	83	2013	_,_,_	OsIRX9, IRX9, OsGT43C/OsIRX9, OsGT43C,OsIRX14, IRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsIRX9L, OsGT43F/OsIRX9L, OsGT43F
36585	23204502	Wang N., Long T., Yao W., Xiong L., Zhang Q., Wu C.	Mutant Resources for the Functional Analysis of the Rice Genome.	Mol Plant	6(3)	596-604	2013		
36590	23290459	Liu Y., Yu L., Tong J., Ding J., Wang R., Lu Y., Xiao L.	tiller number is altered in the ascorbic acid-deficient rice suppressed for L-Galactono-1,4-lactone dehydrogenase.	J. Plant Physiol.	170(4)	389-96	2013		
36592	23299411	Sakai H., Lee S.S., Tanaka T., Numa H., Kim J., Kawahara Y., Wakimoto H., Yang C.C., Iwamoto M., Abe T., Yamada Y., Muto A., Inokuchi H., Ikemura T., Matsumoto T., Sasaki T., Itoh T.	Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.	Plant Cell Physiol.	54(2)	e6	2013		
36593	23416494	Kamrul Huda KM., Yadav S., Akhter Banu MS., Trivedi D.K., Tuteja N.	Genome-wide analysis of plant-type II Ca(2+)ATPases gene family from rice and Arabidopsis: potential role in abiotic stresses.	Plant Physiol. Biochem.	65	32-47	2013		
36595	23638098	Singh A., Kanwar P., Pandey A., Tyagi A.K., Sopory S.K., Kapoor S., Pandey G.K.	Comprehensive Genomic Analysis and Expression Profiling of Phospholipase C Gene Family during Abiotic Stresses and Development in Rice.	PLoS ONE	8(4)	e62494	2013	NPC3,NPC4,PLC2,PLC4,NPC5,NPC2,NPC1,PLC3,_	OsNPC4, OsNPC3, NPC4,OsNPC3, OsNPC4, NPC3,OsPLC2,OsPLC4,OsNPC6, OsNPC5, NPC6,OsNPC2,OsNPC1,OsPLC3,OsPI-PLC1, PI-PLC1, OsPLC1, PLC1 
36596	23146214	Sakamoto T., Morinaka Y., Inukai Y., Kitano H., Fujioka S.	Auxin signal transcription factor regulates expression of the brassinosteroid receptor gene in rice.	Plant J.	73(4)	676-88	2013		
36597	23357425	Pang J., Dong M., Li N., Zhao Y., Liu B.	Functional characterization of a rice de novo DNA methyltransferase, OsDRM2, expressed in Escherichia coli and yeast.	Biochem. Biophys. Res. Commun.	432(1)	157-62	2013		
36604	23135845	Gao J.P., Lin H.X.	QTL analysis and map-based cloning of salt tolerance gene in rice.	Methods Mol. Biol.	956	69-82	2013		
36605	23460903	Coskun D., Britto D.T., Jean Y.K., Kabir I., Tolay I., Torun A.A., Kronzucker H.J.	K? efflux and retention in response to NaCl stress do not predict salt tolerance in contrasting genotypes of rice (Oryza sativa L.).	PLoS ONE	8(2)	e57767	2013		
36610	23333982	Verma D., Ansari M.W., Agrawal G.K., Rakwal R., Shukla A., Tuteja N.	In vitro selection and field responses of somaclonal variant plants of rice cv. PR113 for drought tolerance.	Plant Signal Behav	8(4)		2013		
36616	23400829	Liu Y., Liu B., Zhu X., Yang J., Bordeos A., Wang G., Leach J.E., Leung H.	Fine-mapping and molecular marker development for Pi56(t), a NBS-LRR gene conferring broad-spectrum resistance to Magnaporthe oryzae in rice.	Theor. Appl. Genet.	126(4)	985-98	2013	PI56	Pi56, qBR9.1, Pi56(t)
36618	23385369	Fang C., Zhuang Y., Xu T., Li Y., Li Y., Lin W.	Changes in rice allelopathy and rhizosphere microflora by inhibiting rice phenylalanine ammonia-lyase gene expression.	J. Chem. Ecol.	39(2)	204-12	2013	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1
36619	23289725	Takagi H., Abe A., Yoshida K., Kosugi S., Natsume S., Mitsuoka C., Uemura A., Utsushi H., Tamiru M., Takuno S., Innan H., Cano L.M., Kamoun S., Terauchi R.	QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.	Plant J.	74(1)	174-83	2013		
36620	23443969	Goswami A., Banerjee R., Raha S.	Drought resistance in rice seedlings conferred by seed priming : Role of the anti-oxidant defense mechanisms.	Protoplasma			2013		
36622	23449645	Khanday I., Yadav S.R., Vijayraghavan U.	Rice LHS1/OsMADS1 Controls Floret Meristem Specification by Coordinated Regulation of Transcription Factors and Hormone Signaling Pathways.	Plant Physiol.	161(4)	1970-83	2013	_,_,_,_,MADS55,_,PAP2,HB4,LHS1	OsBLH1,OsKANADI4,OsARF2, ARF2, OsETT2, ETT2, ARF3a,OsKANADI1, OsKANADI2, KANADI1, KANADI2,OsMADS55,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
36625	23400831	Du H.Y., Shen Y.Z., Huang Z.J.	Function of the wheat TaSIP gene in enhancing drought and salt tolerance in transgenic Arabidopsis and rice.	Plant Mol. Biol.	81(4-5)	417-29	2013		
36626	23424246	Wang L., Song X., Gu L., Li X., Cao S., Chu C., Cui X., Chen X., Cao X.	NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.	Plant Cell	25(2)	715-27	2013	_,DCL1	Os-NOT2, OsNOT2,Dcl1, OsDCL1, osDCL1, Os-DCL1
36628	23454292	Nautiyal C.S., Srivastava S., Chauhan P.S., Seem K., Mishra A., Sopory S.K.	Plant growth-promoting bacteria Bacillus amyloliquefaciens NBRISN13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress.	Plant Physiol. Biochem.	66	1-9	2013		
36631	23379468	Kurniasih B., Greenway H., Colmer T.D.	Tolerance of submerged germinating rice to 50-200?mM NaCl in aerated solution.	Physiol Plant	149(2)	222-33	2013		
36633	23371559	Kudo K., Ohta M., Yang L., Wakasa Y., Takahashi S., Takaiwa F.	ER stress response induced by the production of human IL-7 in rice endosperm cells.	Plant Mol. Biol.	81(4-5)	461-75	2013	_,_,IRE1,BZIP50,_,_,BZIP39,BZIP60,_	OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,PDIL2;3, PDIL2-3, PDIL 2-3, OsPDIL2-3, PDIL 2-3,IRE1, OsIRE1, OsIre1,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsbZIP39, bZIP39,OsbZIP60, bZIP60,OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1
36635	23397192	Fukumoto T., Kano A., Ohtani K., Inoue M., Yoshihara A., Izumori K., Tajima S., Shigematsu Y., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Tada Y., Ichimura K., Gomi K., Yoo S.D., Sheen J., Akimitsu K.	Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.	Planta	237(5)	1379-91	2013	ABA8OX1,NCED1,ABA8OX3,WSI18,NCED2,ABA1,ABI5,NCED3,ABA8OX2	OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,OSNCED2, OsNCED2, OsNCED5, NCED5,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2
36636	23377188	Shao Y., He Y.	Visible/near infrared spectroscopy and chemometrics for the prediction of trace element (Fe and Zn) levels in rice leaf.	Sensors (Basel)	13(2)	1872-83	2013		
36638	23466746	Lisko K.A., Hubstenberger J.F., Phillips G.C., Belefant-Miller H., McClung A., Lorence A.	Ontogenetic changes in vitamin C in selected rice varieties.	Plant Physiol. Biochem.	66	41-6	2013		
36640	23420033	Ou-Yang F., Luo Q.J., Zhang Y., Richardson C.R., Jiang Y., Rock C.D.	Transposable element-associated microRNA hairpins produce 21-nt sRNAs integrated into typical microRNA pathways in rice.	Funct. Integr. Genomics	13(2)	207-16	2013		
36641	23388640	Wu W., Zheng X.M., Lu G., Zhong Z., Gao H., Chen L., Wu C., Wang H.J., Wang Q., Zhou K., Wang J.L., Wu F., Zhang X., Guo X., Cheng Z., Lei C., Lin Q., Jiang L., Wang H., Ge S., Wan J.	Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia.	Proc. Natl. Acad. Sci. U.S.A.	110(8)	2775-80	2013	_,HD3A,RAP1B,RFT1,RAP1A	OsBBX19, BBX19, OsM, DTH2, qDTH-2, OsCCT22, CCT22,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
36642	23445750	Platten J.D., Egdane J.A., Ismail A.M.	Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?	BMC Plant Biol.	13	32	2013	HKT8	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
36643	23391577	Bartley L.E., Peck M.L., Kim S.R., Ebert B., Manisseri C., Chiniquy D.M., Sykes R., Gao L., Rautengarten C., Vega-S?nchez ME., Benke P.I., Canlas P.E., Cao P., Brewer S., Lin F., Smith W.L., Zhang X., Keasling J.D., Jentoff R.E., Foster S.B., Zhou J., Ziebell A., An G., Scheller H.V., Ronald P.C.	Overexpression of a BAHD Acyltransferase, OsAt10, Alters Rice Cell Wall Hydroxycinnamic Acid Content and Saccharification.	Plant Physiol.	161(4)	1615-33	2013	AT11,AT12,AT2,AT3,AT1,AT6,AT7,AT8,AT9,AT13,AT14,AT15,AT16,AT17,AT18,AT19,AT20,AT10,AT5,_	OsAT11, OsAt11,OsAT12, OsAt12,OsAT2, OsAt2,OsAT3, OsAt3,OsAT1, OsAt1,OsAT6, OsAt6,OsAT7, OsAt7,OsAT8, OsAt8,OsAT9, OsAt9,OsAT13, OsAt13,OsAT14, OsAt14,OsAT15, OsAt15,OsAT16, OsAt16,OsAT17, OsAt17,OsAT18, OsAt18,OsAT19, OsAt19,OsAT20, OsAt20,OsAT10, OsAt10,OsAT5, OsAt5, OsFMT1, FMT1,OsAT4, OsAt4, AT4, PMT, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1
36644	23421475	Shimajiri Y., Oonishi T., Ozaki K., Kainou K., Akama K.	Genetic manipulation of the gamma-aminobutyric acid (GABA) shunt in rice: overexpression of truncated glutamate decarboxylase (GAD2) and knockdown of gamma-aminobutyric acid transaminase (GABA-T) lead to sustained and high levels of GABA accumulation in rice kernels.	Plant Biotechnol. J.	11(5)	594-604	2013		
36650	23432654	Yamatani H., Sato Y., Masuda Y., Kato Y., Morita R., Fukunaga K., Nagamura Y., Nishimura M., Sakamoto W., Tanaka A., Kusaba M.	NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll - protein complexes during leaf senescence.	Plant J.	74(4)	652-62	2013		
36654	23267004	Liu F., Xu W., Song Q., Tan L., Liu J., Zhu Z., Fu Y., Su Z., Sun C.	Microarray-Assisted Fine-Mapping of Quantitative Trait Loci for cold tolerance in Rice.	Mol Plant	6(3)	757-67	2013		
36656	23385446	Nezhad R.M., Shahpiri A., Mirlohi A.	Heterologous expression and metal-binding characterization of a type 1 metallothionein isoform (OsMTI-1b) from rice (Oryza sativa).	Protein J.	32(2)	131-7	2013	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
36663	23390608	Ye H., Beighley D.H., Feng J., Gu X.Y.	Genetic and physiological characterization of two clusters of quantitative trait Loci associated with seed dormancy and plant height in rice.	G3 (Bethesda)	3(2)	323-31	2013		
36664	23230849	Zhang J.J., Xue H.W.	OsLEC1/OsHAP3E participates in the determination of meristem identity in both vegetative and reproductive developments of rice.	J Integr Plant Biol	55(3)	232-49	2013	HAP3E,OSH1	OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
36665	23424248	Challis R.J., Hepworth J., Mouchel C., Waites R., Leyser O.	A Role for MORE AXILLARY GROWTH1 (MAX1) in Evolutionary Diversity in Strigolactone Signaling Upstream of MAX2.	Plant Physiol.	161(4)	1885-902	2013	SLB1,_,_,_,_,SLB2,D3,D17,D14,D10,D27	OsSLB1,OsCCD8a, OsCCD8c, CCD8a, CCD8c,OsMAX1c,OsMAX1b,OsMAX1D,CYP711A1, OsCYP711A1,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d27(d t), dt, dwf23, d27, OsD27
36666	23437825	Wang K., Gao F., Ji Y., Liu Y., Dan Z., Yang P., Zhu Y., Li S.	ORFH79 impairs mitochondrial function via interaction with a subunit of electron transport chain complex III in Honglian cytoplasmic male sterile rice.	New Phytol.	198(2)	408-18	2013	_,_,KRP3,_,_,_,CDC2-2,CDC2-1	,OsFbox156, Os_F0603,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,P61,OsRFPH2-19,orfH79, ORFH79,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1
36667	23400830	Zhang F., Jiang Y.Z., Yu S.B., Ali J., Paterson A.H., Khush G.S., Xu J.L., Gao Y.M., Fu B.Y., Lafitte R., Li Z.K.	Three genetic systems controlling growth, development and productivity of rice (Oryza sativa L.): a reevaluation of the 'Green Revolution'.	Theor. Appl. Genet.	126(4)	1011-24	2013		
36670	23437005	Gao H., Zheng X.M., Fei G., Chen J., Jin M., Ren Y., Wu W., Zhou K., Sheng P., Zhou F., Jiang L., Wang J., Zhang X., Guo X., Wang J.L., Cheng Z., Wu C., Wang H., Wan J.M.	Ehd4 encodes a novel and Oryza-genus-specific regulator of photoperiodic flowering in rice.	PLoS Genet.	9(2)	e1003281	2013	HD3A,EF1,RFT1,EHD4	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsC3H20, C3H20, Ehd4
36672	23434671	Sangha J.S., Chen Y.H., Kaur J., Khan W., Abduljaleel Z., Alanazi M.S., Mills A., Adalla C.B., Bennett J., Prithiviraj B., Jahn G.C., Leung H.	Proteome Analysis of Rice (Oryza sativa L.) Mutants Reveals Differentially Induced Proteins during Brown Planthopper (Nilaparvata lugens) Infestation.	Int J Mol Sci	14(2)	3921-45	2013		
36674	23456247	Gill S.S., Tajrishi M., Madan M., Tuteja N.	A DESD-box helicase functions in salinity stress tolerance by improving photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. PB1).	Plant Mol. Biol.	82(1-2)	1-22	2013		
36675	23421602	Zhou Q., Yu Q., Wang Z., Pan Y., Lv W., Zhu L., Chen R., He G.	Knockdown of GDCH gene reveals reactive oxygen species-induced leaf senescence in rice.	Plant Cell Environ.	36(8)	1476-89	2013	_,WRKY72	OsGDCH,OsWRKY72, WRKY-72
36679	23396040	Cheng X., Zhu L., He G.	Towards understanding of molecular interactions between rice and the brown planthopper.	Mol Plant	6(3)	621-34	2013		
36680	23206229	Jiang Y., Chen X., Ding X., Wang Y., Chen Q., Song W.Y.	The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance.	Plant J.	73(5)	814-23	2013	XA21,_,_,_	Xa21*, Xa21, OsXA21,Xbos252, XBOS252,OsBIANK1, BIANK1, XB25,Xbos251, XBOS251 
36681	22992000	Qin X., Liu J.H., Zhao W.S., Chen X.J., Guo Z.J., Peng Y.L.	Gibberellin 20-oxidase gene OsGA20ox3 regulates plant stature and disease development in rice.	Mol. Plant Microbe Interact.	26(2)	227-39	2013		
36682	23327584	Yang L., Tian D., Todd C.D., Luo Y., Hu X.	Comparative proteome analyses reveal that nitric oxide is an important signal molecule in the response of rice to aluminum toxicity.	J. Proteome Res.	12(3)	1316-30	2013		
36683	23456295	Kang C.H., Moon B.C., Park H.C., Koo S.C., Chi Y.H., Cheong Y.H., Yoon B.D., Lee S.Y., Kim C.Y.	Rice small C2-domain proteins are phosphorylated by calcium-dependent protein kinase.	Mol. Cells	35(5)	381-7	2013	RPP17,CDPK18,RPP16	Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,Rpp16(t), ERG3, OsERG3
36684	23395688	Hu J., Yi R., Zhang H., Ding Y.	Nucleo-cytoplasmic interactions affect RNA editing of cox2, atp6 and atp9 in alloplasmic male-sterile rice (Oryza sativa L.) lines.	Mitochondrion	13(2)	87-95	2013		
36689	23500712	Lin C.Y., Trinh N.N., Lin C.W., Huang H.J.	Transcriptome analysis of phytohormone, transporters and signaling pathways in response to vanadium stress in rice roots.	Plant Physiol. Biochem.	66	98-104	2013		
36690	23423653	Zuo S., Yin Y., Pan C., Chen Z., Zhang Y., Gu S., Zhu L., Pan X.	Fine mapping of qSB-11 (LE) , the QTL that confers partial resistance to rice sheath blight.	Theor. Appl. Genet.	126(5)	1257-72	2013		
36691	23382237	Li S., Zhao B., Yuan D., Duan M., Qian Q., Tang L., Wang B., Liu X., Zhang J., Wang J., Sun J., Liu Z., Feng Y.Q., Yuan L., Li C.	Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression.	Proc. Natl. Acad. Sci. U.S.A.	110(8)	3167-72	2013	DST,GN1A	OsDST,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
36693	23435087	Ishii T., Numaguchi K., Miura K., Yoshida K., Thanh P.T., Htun T.M., Yamasaki M., Komeda N., Matsumoto T., Terauchi R., Ishikawa R., Ashikari M.	OsLG1 regulates a closed panicle trait in domesticated rice.	Nat. Genet.	45(4)	462-5, 465e1-2	2013	qSH1,SPR3,LG1,SH4	qSH1, qsh1, qSH-1,Spr3(t), Spr3,SPL8, OsSPL8, OsLG1,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
36695	23300256	Yun D., Liang W., Dreni L., Yin C., Zhou Z., Kater M.M., Zhang D.	OsMADS16 Genetically Interacts with OsMADS3 and OsMADS58 in Specifying Floral Patterning in Rice.	Mol Plant	6(3)	743-56	2013		
36696	23280541	Morzan U.N., Capece L., Marti M.A., Estrin D.A.	Quaternary structure effects on the hexacoordination equilibrium in rice hemoglobin rHb1: Insights from molecular dynamics simulations.	Proteins	81(5)	863-73	2013		
36698	23448934	Yang Y.L., Wu J.G., Zhou Y.F., Shi C.H.	[Morphological characteristics and gene mapping of a novel bent pedicel branch (bpb1) mutant in rice].	Yi Chuan	35(2)	208-14	2013		
36699	23420309	Zhang H., Zhang J., Quan R., Pan X., Wan L., Huang R.	EAR motif mutation of rice OsERF3 alters the regulation of ethylene biosynthesis and drought tolerance.	Planta	237(6)	1443-51	2013		
36701	23430256	Luang S., Cho J.I., Mahong B., Opassiri R., Akiyama T., Phasai K., Komvongsa J., Sasaki N., Hua Y.L., Matsuba Y., Ozeki Y., Jeon J.S., Cairns J.R.	Rice Os9BGlu31 Is a Transglucosidase with the Capacity to Equilibrate Phenylpropanoid, Flavonoid, and Phytohormone Glycoconjugates.	J. Biol. Chem.	288(14)	10111-23	2013	BGLU31	Os9bglu31, Os9BGlu31 
36703	23602097	Li Y., Liu S., Yu Z., Liu Y., Wu P.	Isolation and characterization of two novel root-specific promoters in rice (Oryza sativa L.).	Plant Sci.	207	37-44	2013		
36704	23470720	Xuan Y.H., Priatama R.A., Kumar V., Han C.D.	Regulatory role of indeterminate domain 10 (IDD10) in ammonium-dependent gene expression in rice roots.	Plant Signal Behav	8(5)		2013		
36705	23521226	Park S., Byeon Y., Back K.	Transcriptional suppression of tryptamine 5-hydroxylase, a terminal serotonin biosynthetic gene, induces melatonin biosynthesis in rice (Oryza sativa L.).	J. Pineal Res.	55(2)	131-7	2013		
36706	23518283	Jacquemin J., Bhatia D., Singh K., Wing R.A.	The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question.	Curr. Opin. Plant Biol.	16(2)	147-56	2013		
36707	23641184	Takano-Kai N., Jiang H., Powell A., McCouch S., Takamure I., Furuya N., Doi K., Yoshimura A.	Multiple and independent origins of short seeded alleles of GS3 in rice.	Breed. Sci.	63(1)	77-85	2013		
36708	23523465	Shi Y., Wang Y., Flowers T.J., Gong H.	Silicon decreases chloride transport in rice (Oryza sativa L.) in saline conditions.	J. Plant Physiol.	170(9)	847-53	2013		
36709	23496930	Cantu D., Yang B., Ruan R., Li K., Menzo V., Fu D., Chern M., Ronald P.C., Dubcovsky J.	Comparative analysis of protein-protein interactions in the defense response of rice and wheat.	BMC Genomics	14	166	2013		
36710	23496140	Schmitz A.J., Folsom J.J., Jikamaru Y., Ronald P., Walia H.	SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway.	New Phytol.	198(4)	1060-70	2013		
36712	23347338	Riemann M., Haga K., Shimizu T., Okada K., Ando S., Mochizuki S., Nishizawa Y., Yamanouchi U., Nick P., Yano M., Minami E., Takano M., Yamane H., Iino M.	Identification of rice allene oxide cyclase mutants and the function of jasmonate for defence against Magnaporthe oryzae.	Plant J.	74(2)	226-38	2013	AOC	OsAOC, AOC1, OsAOC1, HB, CPM2
36714	23495675	Roy A., Sahoo D., Tripathy B.C.	Involvement of phytochrome A in suppression of photomorphogenesis in rice seedling grown in red light.	Plant Cell Environ.			2013		
36717	23373859	Sasidharan R., Voesenek L.A.	Lowland rice: high-end submergence tolerance.	New Phytol.	197(4)	1029-31	2013		
36718	23477923	Taoka K., Ohki I., Tsuji H., Kojima C., Shimamoto K.	Structure and function of florigen and the receptor complex.	Trends Plant Sci.	18(5)	287-94	2013	_,HD3A,BZIP77,GF14F,GF14C,GF14B,GID2,RAP1A,_	OsKANADI1, OsKANADI2, KANADI1, KANADI2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsbZIP77, OsFD1, FD1,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14c, OsGF14c, 14-3-3c,GF14b, OsGF14b, 14-3-3b,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsBIP116b
36721	23508257	Philip A., Syamaladevi D.P., Chakravarthi M., Gopinath K., Subramonian N.	5' Regulatory region of Ubiquitin 2 gene from Porteresia coarctata makes efficient promoters for transgene expression in monocots and dicots.	Plant Cell Rep.	32(8)	1199-210	2013	_	
36722	23498959	Yamaguchi K., Yamada K., Ishikawa K., Yoshimura S., Hayashi N., Uchihashi K., Ishihama N., Kishi-Kaboshi M., Takahashi A., Tsuge S., Ochiai H., Tada Y., Shimamoto K., Yoshioka H., Kawasaki T.	A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity.	Cell Host Microbe	13(3)	347-57	2013	MSRMK2,RLCK55,RLCK185,PAL1,PR10A,_,MAPK6,SMG1	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsRLCK55,OsRLCK185,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1
36723	23234404	Jiang C.J., Shimono M., Sugano S., Kojima M., Liu X., Inoue H., Sakakibara H., Takatsuji H.	Cytokinins act synergistically with salicylic acid to activate defense gene expression in rice.	Mol. Plant Microbe Interact.	26(3)	287-96	2013	PR1B,GN1A,PR10A,RR6,WRKY45,NH1	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRR6, rr6, Rra6, OsRRA6,OsWRKY45,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
36724	23499843	Bae H., Kim W.T.	The N-terminal tetra-peptide (IPDE) short extension of the U-box motif in rice SPL11 E3 is essential for the interaction with E2 and ubiquitin-ligase activity.	Biochem. Biophys. Res. Commun.	433(2)	266-71	2013		
36726	23643394	Latif M.A., Rahman M.M., Ali M.E., Ashkani S., Rafii M.Y.	Inheritance studies of SSR and ISSR molecular markers and phylogenetic relationship of rice genotypes resistant to tungro virus.	C. R. Biol.	336(3)	125-33	2013		
36728	23466806	Puig J., Meynard D., Khong G.N., Pauluzzi G., Guiderdoni E., Gantet P.	Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.	Gene Expr. Patterns	13(5-6)	160-170	2013	MADS25,MADS61,MADS57,MADS27,MADS23	OsMADS25,OsMADS61, MADS-27b,OsMADS57, MADS-57,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS23, MADS-23
36730	23279638	Ribot C., C?sari S., Abidi I., Chalvon V., Bournaud C., Vallet J., Lebrun M.H., Morel J.B., Kroj T.	The Magnaporthe oryzae effector AVR1-CO39 is translocated into rice cells independently of a fungal-derived machinery.	Plant J.	74(1)	1-12	2013		
36731	23420902	Ishiwata A., Ozawa M., Nagasaki H., Kato M., Noda Y., Yamaguchi T., Nosaka M., Shimizu-Sato S., Nagasaki A., Maekawa M., Hirano H.Y., Sato Y.	Two WUSCHEL-related homeobox Genes, narrow leaf2 and narrow leaf3, Control leaf width in Rice.	Plant Cell Physiol.	54(5)	779-92	2013	NAL2,PNH1,NAL3	nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsPNH1,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
36732	23521023	Mazid M.S., Rafii M.Y., Hanafi M.M., Rahim H.A., Latif M.A.	Genetic variation, heritability, divergence and biomass accumulation of rice genotypes resistant to bacterial blight revealed by quantitative traits and ISSR markers.	Physiol Plant	149(3)	432-47	2013		
36733	23519729	Yoshikawa T., Eiguchi M., Hibara K., Ito J., Nagato Y.	Rice SLENDER LEAF 1 gene encodes cellulose synthase-like D4 and is specifically expressed in M-phase cells to regulate cell proliferation.	J. Exp. Bot.	64(7)	2049-61	2013		
36741	23463776	Liu Y.J., Xiu Z.H., Meeley R., Tan B.C.	Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize.	Plant Cell	25(3)	868-83	2013	_	EMP5, Os EMP5, OsEMP5
36742	23462973	Chujo T., Miyamoto K., Shimogawa T., Shimizu T., Otake Y., Yokotani N., Nishizawa Y., Shibuya N., Nojiri H., Yamane H., Minami E., Okada K.	OsWRKY28, a PAMP-responsive transrepressor, negatively regulates innate immune responses in rice against rice blast fungus.	Plant Mol. Biol.	82(1-2)	23-37	2013	WRKY62,WRKY28,WRKY76,WRKY71	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY28,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY71, WRKY-71
36743	23456248	Huang J., Kim C.M., Xuan Y.H., Park S.J., Piao H.L., Je B.I., Liu J., Kim T.H., Kim B.K., Han C.D.	OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in root hair elongation in rice.	Plant Mol. Biol.	82(1-2)	39-50	2013	_,_,_,_,_,_,_,_,_,_	OsSNDP5, SNDP5,OsSNDP1, SNDP1,OsSNDP3, SNDP3,OsSNDP2, SNDP2,OsSNDP4, SNDP4,OsSNDP6, SNDP6,OsSNDP8, SNDP8,OsSNDP7, SNDP7,OsSNDP9, SNDP9,OsSNDP10, SNDP10
36744	23529204	Huang X., Wang J., Du Z., Zhang C., Li L., Xu Z.	Enhanced resistance to stripe rust disease in transgenic wheat expressing the rice chitinase gene RC24.	Transgenic Res.	22(5)	939-47	2013		
36745	23526892	Hu X., Qian Q., Xu T., Zhang Y., Dong G., Gao T., Xie Q., Xue Y.	The U-box E3 ubiquitin ligase TUD1 functions with a heterotrimeric G alpha subunit to regulate Brassinosteroid-mediated growth in rice.	PLoS Genet.	9(3)	e1003391	2013	ELF1,D61,D1	OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
36747	23505380	Nallamilli B.R., Zhang J., Mujahid H., Malone B.M., Bridges S.M., Peng Z.	Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis.	PLoS Genet.	9(3)	e1003322	2013	EMF2B,FIE2,FIE1,IEZ1,CLF	OsEMF2b, EMF2b,OsFIE2, FIE, OsWD40-153,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718,OsSET24, SDG711, EZ1, OsCLF
36748	23480486	Zhou J., Wang F., Deng P., Jing W., Zhang W.	Characterization and Mapping of a Salt-Sensitive Mutant in Rice (Oryza sativa L.).	J Integr Plant Biol	55(6)	504-13	2013		
36756	23331932	Hayashi S., Takahashi H., Wakasa Y., Kawakatsu T., Takaiwa F.	Identification of a cis-element that mediates multiple pathways of the endoplasmic reticulum stress response in rice.	Plant J.	74(2)	248-57	2013	_,_,BZIP50,BZIP60,IRE1,_,_,BZIP39,_	OsBiP2, Bip2,OsBiP3, BiP3,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsbZIP60, bZIP60,IRE1, OsIRE1, OsIre1,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsbZIP39, bZIP39,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2
36757	23519921	Kim Y.S., Kim I.S., Bae M.J., Choe Y.H., Kim Y.H., Park H.M., Kang H.G., Yoon H.S.	Homologous expression of cytosolic Dehydroascorbate reductase increases grain yield and biomass under paddy field conditions in transgenic rice (Oryza sativa L. japonica).	Planta	237(6)	1613-25	2013		
36761	23289852	Sakuraba Y., Rahman M.L., Cho S.H., Kim Y.S., Koh H.J., Yoo S.C., Paek N.C.	The rice faded green leaf locus encodes protochlorophyllide oxidoreductase B and is essential for chlorophyll synthesis under high light conditions.	Plant J.	74(1)	122-33	2013	_,FGL	OsPorA, PORA, OsPORA,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB
36762	23512849	Wang Y., Kim S.G., Wu J., Huh H.H., Lee S.J., Rakwal R., Kumar Agrawal G., Park Z.Y., Young Kang K., Kim S.T.	Secretome analysis of the rice bacterium Xanthomonas oryzae (Xoo) using in vitro and in planta systems.	Proteomics	13(12-13)	1901-12	2013		
36765	23289750	Kang B., Zhang Z., Wang L., Zheng L., Mao W., Li M., Wu Y., Wu P., Mo X.	OsCYP2, a chaperone involved in degradation of auxin-responsive proteins, plays crucial roles in rice lateral root initiation.	Plant J.	74(1)	86-97	2013	_,IAA9,IAA11,LRT2,IAA20	OsSgt1, SGT1, OsSGT1, Os SGT1,OsIAA9, OsIAA2,OsIAA11,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsIAA20
36771	23519457	Ji C., Li H., Chen L., Xie M., Wang F., Chen Y., Liu Y.G.	A Novel Rice bHLH Transcription Factor, DTD, Acts Coordinately with TDR in Controlling Tapetum Function and Pollen Development.	Mol Plant	6(5)	1715-8	2013	RTS,OSC4,OSC6,EAT1,TDR	RTS, RTS2,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1
36778	23526395	Yan D., Zhou Y., Ye S., Zeng L., Zhang X., He Z.	Beak-shaped grain 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice.	Sci China Life Sci	56(3)	275-83	2013	MADS58,MADS13,GW2,MFO1,LHS1,_,BLS1,MADS55,SPW1	OsMADS58,OsMADS13, MAF1, RMADS206,OsGW2,OsMADS6, MADS6, OsMFO1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsWD40-109,  WD40-109, OsCDC20, CDC20 ,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsMADS55,SPW1, spw1, MADS16, OsMADS16
36780	23602104	Li W., Shao M., Yang J., Zhong W., Okada K., Yamane H., Qian G., Liu F.	Oscyp71Z2 involves diterpenoid phytoalexin biosynthesis that contributes to bacterial blight resistance in rice.	Plant Sci.	207	98-107	2013	CYP71Z5,CYP71Z1,CYP71Z8,CYP71Z6,CYP71Z7,CYP71Z2,CYP71Z4,CYP71Z3	Oscyp71Z5,Oscyp71Z1,Oscyp71Z8,Oscyp71Z6,Oscyp71Z7,Oscyp71Z2,Oscyp71Z4,Oscyp71Z3
36781	23346890	Chen X., Shi J., Hao X., Liu H., Shi J., Wu Y., Wu Z., Chen M., Wu P., Mao C.	OsORC3 is required for lateral root development in rice.	Plant J.	74(2)	339-50	2013		
36782	23485991	Park H.J., Lee S.S., You Y.N., Yoon D.H., Kim B.G., Ahn J.C., Cho H.S.	A Rice Immunophilin Gene, OsFKBP16-3, Confers Tolerance to Environmental Stress in Arabidopsis and Rice.	Int J Mol Sci	14(3)	5899-919	2013		
36783	23605194	Joo J., Choi H.J., Lee Y.H., Kim Y.K., Song S.I.	A transcriptional repressor of the ERF family confers drought tolerance to rice and regulates genes preferentially located on chromosome 11.	Planta	238(1)	155-70	2013		
36784	23602899	Hong M.J., Lee Y.M., Son Y.S., Im C.H., Yi Y.B., Rim Y.G., Bahk J.D., Heo J.B.	Rice Rab11 is required for JA-mediated defense signaling.	Biochem. Biophys. Res. Commun.	434(4)	797-802	2013	_,OPR8,OG1	OsRab11D1, OsRab11, Rab11, ric2,OsOPR8, OsOPR7, OsOPR02-1,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1
36785	23629674	Wang G.F., Li W.Q., Li W.Y., Wu G.L., Zhou C.Y., Chen K.M.	Characterization of Rice NADPH Oxidase Genes and Their Expression under Various Environmental Conditions.	Int J Mol Sci	14(5)	9440-58	2013	_,RBOHI,RBOHA,RBOHH,RBOHC,RBOHF,RBOHD,RBOHE,RBOHB,_,RBOHG	OsFRO1,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2,rbohH, OsrbohH, Os rbohH, OsNox9, OsRboh9, Os-RbohH, RbohH ,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,OsFRO7, FRO7, OsFRO1 ,FRO1,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB
36786	23576519	Robb S.M., Lu L., Valencia E., Burnette J.M., Okumoto Y., Wessler S.R., Stajich J.E.	The Use of RelocaTE and Unassembled Short Reads to Produce High-Resolution Snapshots of Transposable Element Generated Diversity in Rice.	G3 (Bethesda)	3(6)	949-57	2013		
36791	23376772	Song X.Q., Liu L.F., Jiang Y.J., Zhang B.C., Gao Y.P., Liu X.L., Lin Q.S., Ling H.Q., Zhou Y.H.	Disruption of Secondary Wall Cellulose Biosynthesis Alters Cadmium Translocation and Tolerance in Rice Plants.	Mol Plant	6(3)	768-80	2013		
36793	23601492	Yuki Y., Mejima M., Kurokawa S., Hiroiwa T., Takahashi Y., Tokuhara D., Nochi T., Katakai Y., Kuroda M., Takeyama N., Kashima K., Abe M., Chen Y., Nakanishi U., Masumura T., Takeuchi Y., Kozuka-Hata H., Shibata H., Oyama M., Tanaka K., Kiyono H.	Induction of toxin-specific neutralizing immunity by molecularly uniform rice-based oral cholera toxin B subunit vaccine without plant-associated sugar modification.	Plant Biotechnol. J.	11(7)	799-808	2013		
36794	23355544	Du Z., Li H., Wei Q., Zhao X., Wang C., Zhu Q., Yi X., Xu W., Liu X.S., Jin W., Su Z.	Genome-Wide Analysis of Histone Modifications: H3K4me2, H3K4me3, H3K9ac, and H3K27ac in Oryza sativa L. Japonica.	Mol Plant	6(5)	1463-72	2013		
36796	23603961	Ueno Y., Yoshida R., Kishi-Kaboshi M., Matsushita A., Jiang C.J., Goto S., Takahashi A., Hirochika H., Takatsuji H.	MAP kinases phosphorylate rice WRKY45.	Plant Signal Behav	8(6)		2013		
36798	23570336	Niu B.X., He F.R., He M., Ren D., Chen L.T., Liu Y.G.	The ATP-Binding Cassette Transporter OsABCG15 is Required for Anther Development and pollen Fertility in Rice.	J Integr Plant Biol	55(8)	710-20	2013		
36799	23563093	Liu L., Mei Q., Yu Z., Sun T., Zhang Z., Chen M.	An Integrative Bioinformatics Framework for Genome-scale Multiple Level Network Reconstruction of Rice.	J Integr Bioinform	10(2)	223	2013		
36801	23539245	Wang S., Takahashi H., Kajiura H., Kawakatsu T., Fujiyama K., Takaiwa F.	Transgenic Rice Seeds Accumulating Recombinant Hypoallergenic Birch pollen Allergen Bet v 1 Generate Giant Protein Bodies.	Plant Cell Physiol.	54(6)	917-33	2013		
36804	23628812	Demont M., Stein A.J.	Global value of GM rice: a review of expected agronomic and consumer benefits.	N Biotechnol	30(5)	426-36	2013		
36805	23551229	Cho S.H., Yoo S.C., Zhang H., Pandeya D., Koh H.J., Hwang J.Y., Kim G.T., Paek N.C.	The rice narrow leaf2 and narrow leaf3 loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development.	New Phytol.	198(4)	1071-84	2013	NAL2,NAL3	nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
36806	23597918	Hashizume K., Ito T., Ishizuka T., Takeda N.	Formation of ethyl ferulate by rice koji enzyme in sake and mirin mash conditions.	J. Biosci. Bioeng.	116(2)	209-13	2013		
36807	23620302	Joo J., Lee Y.H., Kim Y.K., Nahm B.H., Song S.I.	Abiotic stress responsive rice ASR1 and ASR3 exhibit different tissue-dependent sugar and hormone-sensitivities.	Mol. Cells	35(5)	421-35	2013	ASR4,ASR3,ASR1,ASR5,ASR2,_	Asr4, OsASR6, OsASR2, Asr2,Asr3, OsASR5, OsASR1, Asr1,OsAsr1, OsASR3, ASR3, Asr3,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,OsAsr2, OsASR4, OsASR6,OsASR2, OsASR4, Asr4, ASR2
36808	23581288	Guo X., Hou X., Fang J., Wei P., Xu B., Chen M., Feng Y., Chu C.	The rice GERMINATION DEFECTIVE1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.	Plant J.	75(3)	403-16	2013	LFL1,_,GA2OX3,SD1,GD1,GA20OX1,D18	OsLFL1, OsSTA29, STA29,OsVAL2, VAL2,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsVAL1, VAL1,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
36809	23638826	Ouyang Y., Zhang Q.	Understanding reproductive isolation based on the rice model.	Annu Rev Plant Biol	64	111-35	2013		
36810	23583977	Ishimaru K., Hirotsu N., Madoka Y., Murakami N., Hara N., Onodera H., Kashiwagi T., Ujiie K., Shimizu B.I., Onishi A., Miyagawa H., Katoh E.	Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.	Nat. Genet.	45(6)	707-11	2013	TGW6	tgw6, OsSTRL7, STRL7
36812	23620301	Kim S.R., Yang J.I., An G.	OsCpn60alpha1, encoding the plastid chaperonin 60alpha subunit, is essential for folding of rbcL.	Mol. Cells	35(5)	402-9	2013	TCD9,_,_,_,_,_	OsCPn60alpha3, OsCPn60a3,OsCPn60beta1, OsCPn60b1,OsCPn60beta2, OsCPn60b2,OsCPn60alpha1, OsCPn60a1,OsCPn60alpha2, OsCPn60a2,OsCPn60beta3, OsCPn60b3
36814	23564402	Zhang L., Jiang D., Pang J., Chen R., Wang X., Yang D.	The endoplasmic reticulum stress induced by highly expressed OsrAAT reduces seed size via pre-mature programmed cell death.	Plant Mol. Biol.	83(1-2)	153-61	2013	BZIP50,BZIP60,_	OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsbZIP60, bZIP60,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
36815	23629832	Ren D., Li Y., Zhao F., Sang X., Shi J., Wang N., Guo S., Ling Y., Zhang C., Yang Z., He G.	MULTI-FLORET SPIKELET1, which encodes an AP2/ERF protein, determines spikelet meristem fate and sterile lemma identity in rice.	Plant Physiol.	162(2)	872-84	2013		
36816	23596187	Leaungthitikanchana S., Fujibe T., Tanaka M., Wang S., Sotta N., Takano J., Fujiwara T.	Differential expression of three BOR1 genes corresponding to different genomes in response to boron conditions in hexaploid Wheat (Triticum aestivum L.).	Plant Cell Physiol.	54(7)	1056-63	2013	BOR2,BOR4,BOR3,BOR1	OsBOR2,OsBOR4,OsBOR3,OsBOR1
36817	23580440	Neilson K.A., Scafaro A.P., Chick J.M., George I.S., Van Sluyter SC., Gygi S.P., Atwell B.J., Haynes P.A.	The influence of signals from chilled roots on the proteome of shoot tissues in rice seedlings.	Proteomics	13(12-13)	1922-33	2013		
36824	23571660	Singh R., Jwa N.S.	The rice MAPKK-MAPK interactome: the biological significance of MAPK components in hormone signal transduction.	Plant Cell Rep.	32(6)	923-31	2013		
36825	23621526	Fukumoto K., Alamgir K.M., Yamashita Y., Mori I.C., Matsuura H., Galis I.	Response of rice to insect elicitors and the role of OsJAR1 in wound and herbivory-induced JA-Ile accumulation.	J Integr Plant Biol	55(8)	775-84	2013	JAR1	OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
36826	23628996	Ban Y., Kobayashi Y., Hara T., Hamada T., Hashimoto T., Takeda S., Hattori T.	alpha-tubulin Is Rapidly Phosphorylated in Response to Hyperosmotic Stress in Rice and Arabidopsis.	Plant Cell Physiol.	54(6)	848-58	2013		
36827	23563801	Song M.Y., Kim C.Y., Han M., Ryu H.S., Lee S.K., Sun L., He Z., Seo Y.S., Canal P., Ronald P.C., Jeon J.S.	Differential requirement of Oryza sativa RAR1 in immune receptor-mediated resistance of rice to Magnaporthe oryzae.	Mol. Cells	35(4)	327-34	2013		
36828	23580596	Fukuda M., Wen L., Satoh-Cruz M., Kawagoe Y., Nagamura Y., Okita T.W., Washida H., Sugino A., Ishino Y., Ishino S., Ogawa M., Sunada M., Ueda T., Kumamaru T.	A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm.	Plant Physiol.	162(2)	663-74	2013	GLUP6,GLUP4	glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a
36830	23591078	Azuma T., Inoue Y., Hamada Y., Okishio T., Sasayama D., Itoh K.	Anoxia promotes gravitropic curvature in rice pulvini but inhibits it in wheat and oat pulvini.	J. Plant Physiol.	170(13)	1158-64	2013		
36831	23606413	Chen T., Xu Y., Wang J., Wang Z., Yang J., Zhang J.	Polyamines and ethylene interact in rice grains in response to soil drying during grain filling.	J. Exp. Bot.	64(8)	2523-38	2013		
36832	23509111	Funayama K., Kojima S., Tabuchi-Kobayashi M., Sawa Y., Nakayama Y., Hayakawa T., Yamaya T.	Cytosolic Glutamine Synthetase1;2 is Responsible for the Primary Assimilation of Ammonium in Rice Roots.	Plant Cell Physiol.	54(6)	934-43	2013	GLN1;2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
36836	23601108	Akamatsu A., Wong H.L., Fujiwara M., Okuda J., Nishide K., Uno K., Imai K., Umemura K., Kawasaki T., Kawano Y., Shimamoto K.	An OsCEBiP/OsCERK1-OsRacGEF1-OsRac1 Module Is an Essential Early Component of Chitin-Induced Rice Immunity.	Cell Host Microbe	13(4)	465-76	2013	_,_,RAC1,CEBiP	OsRacGEF1, RacGEF1,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,CEBIP, Os-LYP1, LYP1, OsCEBiP
36837	23586618	Kwon Y.I., Abe K., Endo M., Osakabe K., Ohtsuki N., Nishizawa-Yokoi A., Tagiri A., Saika H., Toki S.	DNA replication arrest leads to enhanced homologous recombination and cell death in meristems of rice OsRecQl4 mutants.	BMC Plant Biol.	13(1)	62	2013	_	OsRecQl4, RecQl4, OsMed34_1, Med34_1 
36838	23551455	Ogo Y., Ozawa K., Ishimaru T., Murayama T., Takaiwa F.	Transgenic rice seed synthesizing diverse flavonoids at high levels: a new platform for flavonoid production with associated health benefits.	Plant Biotechnol. J.	11(6)	734-46	2013	4CL3,ROMT9,_,_,_,CHS	Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,C4H2, OsC4H, OsC4HL, C4H,gh1, GH1, OsCHI, Cfi, CHI,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26
36843	23589438	Li J., Shang K., Liu J., Jiang T., Hua H.	Multi-generational effects of rice harboring Bph15 on brown planthopper, Nilaparvata lugens.	Pest Manag. Sci.			2013		
36845	23629836	Ueda K., Yoshimura F., Miyao A., Hirochika H., Nonomura K.I., Wabiko H.	COLLAPSED ABNORMAL pollen1 gene encoding the arabinokinase-like protein is involved in pollen development in rice.	Plant Physiol.	162(2)	858-71	2013	CAP1,-	,OsARA1
36846	23624440	Wu H.B., Wang B., Chen Y., Liu Y.G., Chen L.	Characterization and fine mapping of the rice premature senescence mutant ospse1.	Theor. Appl. Genet.	126(7)	1897-907	2013	PSE1,SGR,NYC1	OsPSE1, OsPLL1, PLL1,sgr(t), sgr, OsSGR, OsSgr,nyc1, OsNYC1
36848	23548743	Cesari S., Thilliez G., Ribot C., Chalvon V., Michel C., Jauneau A., Rivas S., Alaux L., Kanzaki H., Okuyama Y., Morel J.B., Fournier E., Tharreau D., Terauchi R., Kroj T.	The Rice Resistance Protein Pair RGA4/RGA5 Recognizes the Magnaporthe oryzae Effectors AVR-Pia and AVR1-CO39 by Direct Binding.	Plant Cell	25(4)	1463-81	2013	_,_,PICO39	Os11gRGA4, RGA4,Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5,PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
36849	23571674	Lim S.D., Hwang J.G., Jung C.G., Hwang S.G., Moon J.C., Jang C.S.	Comprehensive Analysis of the Rice RING E3 Ligase Family Reveals Their Functional Diversity in Response to Abiotic stress.	DNA Res.	20(3)	299-314	2013	_,_,_,_,_,_,_,_,_,C3H15,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RFI2,_,_,_,_,_,_	OsRFPH2-1,OsRFPH2-11, OsHIR1,OsRFPH2-4,OsRFPH2-12,OsRFPH2-8,OsRFPH2-9,OsRFPV-2,OsRFPH2-14,OsRFPH2-17,OsC3H15, OsRFPHC-3,OsRFPH2-20,OsRFPH2-21,OsRFPH2-23,OsRFPHC-2,OsRFPH2-22,XBOS31, OsRFPHC-7,OsRFPHC-6,OsRFPHC-9,OsRFPHC-15,OsRFPV-3,OsRFPV-4,OsRFPV-5,OsRFPH2-16, OsGIRP1,OsRFPH2-6,OsRFPHC-14, OsSTA9,OsRFPV-1,OsRFPH2-7,OsRFPH2-13,OsRFPHC-4,OsRFPV-6,OsRFPH2-5,OsRFPHC-8,OsRFPHC-16,OsRFPH2-18,OsRFPH2-19,OsRFPHC-10, SIP13 ,OsRFPHC-1, OsNLA2, NLA2 ,OsRFPHC-13, OsNLA, NAL, OsNLA1, NAL1,OsRFPHC-5, RFPHC-5,OsRFPH2-24, OsHRZ2, HRZ2,OsRFPH2-10, RFPH2-10, OsRFI2 ,OsRFPHC-11,OsRFPHC-12,OsRFPV-7,OsRFPH2-3,OsRFPH2-15,OsRFPH2-2
36851	23575418	Yamaji N., Xia J.X., Mitani-Ueno N., Yokosho K., Ma J.F.	Preferential delivery of Zn to developing tissues in rice is mediated by a P-type ATPases, OsHMA2.	Plant Physiol.	162(2)	927-39	2013	LCT1,HMA2	OsLCT1,OsHMA2, osHMA2, OsHMA2v 
36852	23566853	Wu P., Shou H., Xu G., Lian X.	Improvement of phosphorus efficiency in rice on the basis of understanding phosphate signaling and homeostasis.	Curr. Opin. Plant Biol.	16(2)	205-12	2013		
36857	23566873	Hsu Y.Y., Chao Y.Y., Kao C.H.	Cobalt chloride-induced lateral root formation in rice: The role of heme oxygenase.	J. Plant Physiol.	170(12)	1075-81	2013	YLC2,SE5	OsHO2, HO2, OsHO-2, HO-2,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
36862	23070916	Lan H.X., Wang Z.F., Wang Q.H., Wang M.M., Bao Y.M., Huang J., Zhang H.S.	Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.).	Mol. Biol. Rep.	40(2)	1201-10	2013		
36865	23071218	Rose T.J., Impa S.M., Rose M.T., Pariasca-Tanaka J., Mori A., Heuer S., Johnson-Beebout SE., Wissuwa M.	Enhancing phosphorus and zinc acquisition efficiency in rice: a critical review of root traits and their potential utility in rice breeding.	Ann. Bot.	112(2)	331-45	2013		
36870	23064615	Li S., Yan S., Wang A.H., Zou G., Huang X., Han B., Qian Q., Tao Y.	Identification of QTLs associated with tissue culture response through sequencing-based genotyping of RILs derived from 93-11 ~ Nipponbare in rice (Oryza sativa).	Plant Cell Rep.	32(1)	103-16	2013		
36872	23026817	Saika H., Nonaka S., Osakabe K., Toki S.	Sequential monitoring of transgene expression following Agrobacterium-mediated transformation of rice.	Plant Cell Physiol.	53(11)	1974-83	2012		
36876	22922107	Kang Z., Li G., Huang J., Niu X., Zou H., Zang G., Wenwen Y., Wang G.	Photosynthetic and physiological analysis of the rice high-chlorophyll mutant (Gc).	Plant Physiol. Biochem.	60	81-7	2012		
36877	23180670	Chen X., Vega-S?nchez ME., Verhertbruggen Y., Chiniquy D., Canlas P.E., Fagerstr?m A., Prak L., Christensen U., Oikawa A., Chern M., Zuo S., Lin F., Auer M., Willats W.G., Bartley L., Harholt J., Scheller H.V., Ronald P.C.	Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification.	Mol Plant	6(2)	570-3	2013	_	OsIRX10, IRX10
36883	23017909	Duan J., Zhang M., Zhang H., Xiong H., Liu P., Ali J., Li J., Li Z.	OsMIOX, a Myo-inositol oxygenase gene, improves drought tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.).	Plant Sci.	196	143-51	2012	MIOX	OsMIOX
36891	23251593	Bagnaresi P., Biselli C., Orr? L., Urso S., Crispino L., Abbruscato P., Piffanelli P., Lupotto E., Cattivelli L., Val? G.	Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes.	PLoS ONE	7(12)	e51609	2012		
36892	23131380	Yang C.W., Mousa S.A.	The effect of red yeast rice (Monascus purpureus) in dyslipidemia and other disorders.	Complement Ther Med	20(6)	466-74	2012		
36896	23397013	Gopalakrishnan S., Upadhyaya H., Vadlamudi S., Humayun P., Vidya M.S., Alekhya G., Singh A., Vijayabharathi R., Bhimineni R.K., Seema M., Rathore A., Rupela O.	Plant growth-promoting traits of biocontrol potential bacteria isolated from rice rhizosphere.	Springerplus	1(1)	71	2012		
36899	23271017	Yang G.D., Yan K., Wu B.J., Wang Y.H., Gao Y.X., Zheng C.C.	Genomewide analysis of intronic microRNAs in rice and Arabidopsis.	J. Genet.	91(3)	313-24	2012		
36900	23236132	Zhang X., Wang J., Huang J., Lan H., Wang C., Yin C., Wu Y., Tang H., Qian Q., Li J., Zhang H.	Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice.	Proc. Natl. Acad. Sci. U.S.A.	109(52)	21534-9	2012	_,_,_	OsPPKL1, PPKL1, qGL3, OsPP54, PP54, GL3.1,OsPPKL2, OsPP73,OsPPKL3, OsPP132
36901	23258571	Wei H., Liu J., Wang Y., Huang N., Zhang X., Wang L., Zhang J., Tu J., Zhong X.	A dominant major locus in chromosome 9 of rice (Oryza sativa L.) confers tolerance to 48C high temperature at seedling stage.	J. Hered.	104(2)	287-94	2013	HTAS	OsHTAS
36904	23279104	Long X., Liu Q., Chan M., Wang Q., Sun S.S.	Metabolic engineering and profiling of rice with increased lysine.	Plant Biotechnol. J.	11(4)	490-501	2013		
36906	23630446	Lee S.E., Young-Woong C., Mo H.H., Son J., Park K., Cho K.	Endosulfan-Induced Biomarkers in Japanese Rice Fish (Oryzias latipes) Analyzed by SELDI-TOF-MS.	Int. J. Biol. Sci.	9(4)	343-9	2013		
36907	23468992	Zhang Z., Zhang Q., Wu J., Zheng X., Zheng S., Sun X., Qiu Q., Lu T.	Gene knockout study reveals that cytosolic ascorbate peroxidase 2(OsAPX2) plays a critical role in growth and reproduction in rice under drought, salt and cold stresses.	PLoS ONE	8(2)	e57472	2013	APX2	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
36909	23555916	Kim S.I., Tai T.H.	Identification of SNPs in Closely Related Temperate Japonica Rice Cultivars Using Restriction Enzyme-Phased Sequencing.	PLoS ONE	8(3)	e60176	2013		
36911	23334469	Huang J., Kim C.M., Xuan Y.H., Liu J., Kim T.H., Kim B.K., Han C.D.	Formin homology 1 (OsFH1) regulates root-hair elongation in rice (Oryza sativa).	Planta	237(5)	1227-39	2013	_	OsFH1, FH1
36915	23357881	Chen Q., Chen X., Wang Q., Zhang F., Lou Z., Zhang Q., Zhou D.X.	Structural basis of a histone H3 lysine 4 demethylase required for stem elongation in rice.	PLoS Genet.	9(1)	e1003239	2013		
36916	23334472	Lee E.J., Lee B.H., Kim B.K., Lee J.W.	Enhanced production of carboxymethylcellulase of a marine microorganism, Bacillus subtilis subsp. subtilis A-53 in a pilot-scaled bioreactor by a recombinant Escherichia coli JM109/A-53 from rice bran.	Mol. Biol. Rep.	40(5)	3609-21	2013		
36919	23359423	Mukhopadhyay P., Singla-Pareek SL., Reddy M.K., Sopory S.K.	Stress-Mediated Alterations in Chromatin Architecture Correlate with Down-Regulation of a Gene Encoding 60S rpL32 in Rice.	Plant Cell Physiol.	54(4)	528-40	2013		
36925	23404671	Kobayashi H., Ikeda T.M., Nagata K.	Spatial and temporal progress of programmed cell death in the developing starchy endosperm of rice.	Planta	237(5)	1393-400	2013		
36927	23434658	An N., Ou J., Jiang D., Zhang L., Liu J., Fu K., Dai Y., Yang D.	Expression of a functional recombinant human Basic fibroblast growth factor from transgenic rice seeds.	Int J Mol Sci	14(2)	3556-67	2013		
36929	23381954	Takano N., Takahashi Y., Yamamoto M., Teranishi M., Yamaguchi H., Sakamoto A.N., Hase Y., Fujisawa H., Wu J., Matsumoto T., Toki S., Hidema J.	Isolation of a novel UVB-tolerant rice mutant obtained by exposure to carbon-ion beams.	J. Radiat. Res.	54(4)	637-48	2013	_	UTR319
36936	23394789	Kim S.R., An G.	Rice chloroplast-localized heat shock protein 70, OsHsp70CP1, is essential for chloroplast development under high-temperature conditions.	J. Plant Physiol.	170(9)	854-63	2013	CAB1R,HSP70CP1,HSP70CP2	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,OsHsp70CP1,OsHsp70CP2
36938	23399101	Mutum R.D., Balyan S.C., Kansal S., Agarwal P., Kumar S., Kumar M., Raghuvanshi S.	Evolution of variety-specific regulatory schema for expression of osa-miR408 in indica rice varieties under drought stress.	FEBS J.	280(7)	1717-30	2013		
36945	23553598	Mittal D., Mukherjee S.K., Vasudevan M., Mishra N.S.	Identification of tissue-preferential expression patterns of rice miRNAs.	J. Cell. Biochem.	114(9)	2071-81	2013		
36946	23501875	Zheng H., Li S., Ren B., Zhang J., Ichii M., Taketa S., Tao Y., Zuo J., Wang H.	LATERAL ROOTLESS2, a Cyclophilin Protein, Regulates Lateral Root Initiation and Auxin Signaling Pathway in Rice.	Mol Plant	6(5)	1719-21	2013	LRT2,ARF16,IAA31,IAA20,IAA23	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsARF16,OsIAA3, OsIAA31,OsIAA20,OsIAA23
36948	23471133	Li J., Mu J., Bai J., Fu F., Zou T., An F., Zhang J., Jing H., Wang Q., Li Z., Yang S., Zuo J.	PARAQUAT RESISTANT1, a Golgi-Localized Putative Transporter Protein, Is Involved in Intracellular Transport of Paraquat.	Plant Physiol.	162(1)	470-83	2013	PUT3	OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 
36957	23604075	Mispan M.S., Zhang L., Feng J., Gu X.Y.	Quantitative Trait Locus and Haplotype Analyses of Wild and Crop-Mimic Traits in U.S. Weedy Rice.	G3 (Bethesda)	3(6)	1049-59	2013		
36958	23563552	Bao Y., Yanase E., Nakatsuka S.	Isolation of Campesteryl Ferulate and Epi-Campesteryl Ferulate, Two Components of gamma-Oryzanol from Rice Bran.	Biosci. Biotechnol. Biochem.	77(4)	877-9	2013		
36959	23624393	Liang Y.S., Zhan X.D., Wang H.M., Gao Z.Q., Lin Z.C., Chen D.B., Shen X.H., Cao L.Y., Cheng S.H.	Locating QTLs controlling several adult root traits in an elite Chinese hybrid rice.	Gene	526(2)	331-5	2013		
36960	23570690	Abiko M., Maeda H., Tamura K., Hara-Nishimura I., Okamoto T.	Gene expression profiles in rice gametes and zygotes: identification of gamete-enriched genes and up- or down-regulated genes in zygotes after fertilization.	J. Exp. Bot.	64(7)	1927-40	2013	_,RBOHB,_,WRKY42,_,RPA1,_,_,_,_,_,_,_,CCH,AGP3,_,_,RPP17,_,_,_,_,SUMO3,_,_,_,WOX5,_,MET1B,MSRMK2,GH9B6,_,RAD21-3,CBSCLC1,_,_,_,OSCA1.3,_,_,_,_,_,_,_,_,_,_,_,RAP1A,_,_,BEL,AHA8,_,_,_,BZIP34,_,WRKY19,_,TIP4;1,_	,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,,OsWRKY42, WRKY-42,OsCRR3, CCR3,OsRPA1, OsRPA70b, RPA70b,,,,,,,,OsATX1, CCH, ATX1,OsAGP3,OsRhmbd7, RHMBD7,,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b,,,,,OsSUMO3,OsFDML4, FDML4,,,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,,OsMET1b, OsMET1-2, MET1b, MET1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsGH9B6,,OsRad21-3,OsCBSCLC1,,OsFbox456, Fbox456, Os_F0543,,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,,,,,OsHSP70, hsp70,,,,,,,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,,,bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,,,PEG1,OsbZIP34,OsRH52A, RH52A,OsWRKY19,,OsTIP4;1, TIP4-1,
36961	23563550	Yamaguchi K., Nakamura Y., Ishikawa K., Yoshimura Y., Tsuge S., Kawasaki T.	Suppression of Rice Immunity by Xanthomonas oryzae Type III Effector Xoo2875.	Biosci. Biotechnol. Biochem.	77(4)	796-801	2013	_,_	OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2
36963	23137285	Hu Z., He H., Zhang S., Sun F., Xin X., Wang W., Qian X., Yang J., Luo X.	A Kelch motif-containing serine/threonine protein phosphatase determines the large grain QTL trait in rice.	J Integr Plant Biol	54(12)	979-90	2012		
36964	23352405	Pereira E.G., Oliva M.A., Rosado-Souza L., Mendes G.C., Colares D.S., Stopato C.H., Almeida A.M.	Iron excess affects rice photosynthesis through stomatal and non-stomatal limitations.	Plant Sci.	201-202	81-92	2013		
36965	23231646	Wang Y., Lin Y.C., So J., Du Y., Lo C.	Conserved metabolic steps for sporopollenin precursor formation in tobacco and rice.	Physiol Plant	149(1)	13-24	2013	_,LAP6	OsTKPR1, OsDFR2, OS-DFR2, OsDFR2A,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6
36967	23352410	Lei D., Tan L., Liu F., Chen L., Sun C.	Identification of heat-sensitive QTL derived from common wild rice (Oryza rufipogon Griff.).	Plant Sci.	201-202	121-7	2013		
36971	23216197	Wang W., Chen L.N., Wu H., Zang H., Gao S., Yang Y., Xie S., Gao X.	Comparative proteomic analysis of rice seedlings in response to inoculation with Bacillus cereus.	Lett. Appl. Microbiol.	56(3)	208-15	2013		
36975	23544067	Zhang Y., Wei C., Jiang W., Wang L., Li C., Wang Y., Dow J.M., Sun W.	The HD-GYP Domain Protein RpfG of Xanthomonas oryzae pv. oryzicola Regulates Synthesis of Extracellular Polysaccharides that Contribute to Biofilm Formation and Virulence on Rice.	PLoS ONE	8(3)	e59428	2013		
36978	23322175	Gao Y., Xu H., Shen Y., Wang J.	Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-Seq technique.	Plant Mol. Biol.	81(4-5)	363-78	2013		
36981	23384860	Lv Q., Xu X., Shang J., Jiang G., Pang Z., Zhou Z., Wang J., Liu Y., Li T., Li X., Xu J., Cheng Z., Zhao X., Li S., Zhu L.	Functional analysis of Pid3-A4, an ortholog of rice blast resistance gene Pid3 revealed by allele mining in common wild rice.	Phytopathology	103(6)	594-9	2013	PID3	Pi-d3, Pid3, Pi25
36983	23459234	Ding X., Li X., Xiong L.	Insight into differential responses of upland and paddy rice to drought stress by comparative expression profiling analysis.	Int J Mol Sci	14(3)	5214-38	2013		
36984	23502780	Luo D., Xu H., Liu Z., Guo J., Li H., Chen L., Fang C., Zhang Q., Bai M., Yao N., Wu H., Wu H., Ji C., Zheng H., Chen Y., Ye S., Li X., Zhao X., Li R., Liu Y.G.	A detrimental mitochondrial-nuclear interaction causes cytoplasmic male sterility in rice.	Nat. Genet.	45(5)	573-7	2013	_,_,RF3,_	WA352,Rf4, Rf-4, PPR782a, PPR9, PPR3,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,OsCOX11, COX11
36985	23523466	Qiu B., Zeng F., Cai S., Wu X., Haider S.I., Wu F., Zhang G.	Alleviation of chromium toxicity in rice seedlings by applying exogenous glutathione.	J. Plant Physiol.	170(8)	772-9	2013		
36986	23499935	Klaubauf S., Ribot C., Melayah D., Lagorce A., Lebrun M.H., de Vries RP.	The pentose catabolic pathway of the rice-blast fungus Magnaporthe oryzae involves a novel pentose reductase restricted to few fungal species.	FEBS Lett.	587(9)	1346-52	2013		
36987	23507971	Yan W., Liu H., Zhou X., Li Q., Zhang J., Lu L., Liu T., Liu H., Zhang C., Zhang Z., Shen G., Yao W., Chen H., Yu S., Xie W., Xing Y.	Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice.	Cell Res.	23(7)	969-71	2013	HD2	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
36992	23582455	Zhou S.R., Yin L.L., Xue H.W.	Functional genomics based understanding of rice endosperm development.	Curr. Opin. Plant Biol.	16(2)	236-46	2013		
36995	23050791	Nishizawa-Yokoi A., Nonaka S., Saika H., Kwon Y.I., Osakabe K., Toki S.	Suppression of Ku70/80 or Lig4 leads to decreased stable transformation and enhanced homologous recombination in rice.	New Phytol.	196(4)	1048-59	2012	_,_,_,_,_,_,RAD51B,RAD54,_,_,RAD51C,_,RAD51D,_,_	OsBRCA2,Rad50,DSS1/SEM1, DSS1, SEM1,OsBRCA1,OsLig4, Lig4,XRCC3, OsXRCC3,OsRAD51B, OsRad51B,OsRAD54, OsRad54,OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4,MRE11, OsMRE11,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsRecQl4, RecQl4, OsMed34_1, Med34_1 ,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,OsKu80, Ku80,OsKu70, Ku70
36999	22921006	Hu F., Kang Z., Qiu S., Wang Y., Qin F., Yue C., Huang J., Wang G.	Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency.	Plant Sci.	195	125-34	2012	TLP27	OsTLP27
37002	23027867	Liu G., Tian H., Huang Y.Q., Hu J., Ji Y.X., Li S.Q., Feng Y.Q., Guo L., Zhu Y.G.	Alterations of mitochondrial protein assembly and jasmonic acid biosynthesis pathway in Honglian (HL)-type cytoplasmic male sterility rice.	J. Biol. Chem.	287(47)	40051-60	2012	_,_,_,SODA1,_,TS2	,atp1, atp1-1, ATP1,orfH79, ORFH79,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,,
37005	23073011	Trivedi D., Yadav S., Vaid N., Tuteja N.	Genome wide analysis of Cyclophilin gene family from rice and Arabidopsis and its comparison with yeast.	Plant Signal Behav	7(12)		2012		
37013	23192746	Zong W., Zhong X., You J., Xiong L.	Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress.	Plant Mol. Biol.	81(1-2)	175-88	2013		
37016	23193278	Wang D., Xia Y., Li X., Hou L., Yu J.	The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology.	Nucleic Acids Res.	41(Database issue)	D1199-205	2013		
37017	23129510	Wu S.F., Huang J., Ye G.Y.	Molecular cloning and pharmacological characterisation of a tyramine receptor from the rice stem borer, Chilo suppressalis (Walker).	Pest Manag. Sci.	69(1)	126-34	2013		
37021	23154534	Wang P., Wan C., Xu Z., Wang P., Wang W., Sun C., Ma X., Xiao Y., Zhu J., Gao X., Deng X.	One Divinyl reductase reduces the 8-vinyl groups in various intermediates of chlorophyll biosynthesis in a given higher plant species, but the isozyme differs between species.	Plant Physiol.	161(1)	521-34	2013	_	OsDVR, DVR
37023	23136980	Yang X.Y., Zeng Z.H., Yan J.Y., Fan W., Bian H.W., Zhu M.Y., Yang J.L., Zheng S.J.	Association of specific pectin methylesterases with?Al-induced root elongation inhibition in rice.	Physiol Plant	148(4)	502-11	2013	PME7,PME3,PME4,PME5,PME9,PME10,PME20,PME22,PME24,PME26,PME28,PME30,PME34,PME35,PME13,PME21,PME12,PME23,PME25,PME2,PME8,PME6,_,PME27,PME19,PME31,PME33,PME18,PME15,PME29,PME14,PME16,PME17,PME1,PME32	OsPME7,OsPME3,OsPME4,OsPME5,OsPME9,OsPME10,OsPME20, OsEnS-109,OsPME22,OsPME24,OsPME26,OsPME28,OsPME30,OsPME34,OsPME35,OsPME13,OsPME21,OsPME12,OsPME23,OsPME25,OsPME2,OsPME8,OsPME6, OsPME1,OsPME1,OsPME27,OsPME19,OsPME31,OsPME33,OsPME18,OsPME15,OsPME29,OsPME14,OsPME16,OsPME17,OsPME11, OsPME1,OsPME32, OsSTA270
37025	23129534	Li B., Liu B., Shan C., Ibrahim M., Lou Y., Wang Y., Xie G., Li H.Y., Sun G.	Antibacterial activity of two chitosan solutions and their effect on rice bacterial leaf blight and leaf streak.	Pest Manag. Sci.	69(2)	312-20	2013		
37026	23194296	Zhang D., Lee H.F., Pettit S.C., Zaro J.L., Huang N., Shen W.C.	Characterization of transferrin receptor-mediated endocytosis and cellular iron delivery of recombinant human serum transferrin from rice (Oryza sativa L.).	BMC Biotechnol.	12	92	2012		
37032	23220821	Tsuda K., Akiba T., Kimura F., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Ito Y.	ONION2 fatty acid elongase is required for shoot development in rice.	Plant Cell Physiol.	54(2)	209-17	2013	_,IAA7,ROC1,IAA14	ONI2,OsIAA7,Roc1(t), GL2-1,OsIAA14, AUX/IAA14, OsAUX/IAA14 
37033	23275199	Zhang X.Q., Hou P., Zhu H.T., Li G.D., Liu X.G., Xie X.M.	Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality.	Mol. Biol. Rep.	40(5)	3475-81	2013	_	OsVPS22
37037	23250448	Chang C.W., Cou?ago RL., Williams S.J., Bod?n M., Kobe B.	Crystal structure of rice importin-alpha and structural basis of its interaction with plant-specific nuclear localization signals.	Plant Cell	24(12)	5074-88	2012	IMPA1A	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a
37038	23263792	Moon S., Kim S.R., Zhao G., Yi J., Yoo Y., Jin P., Lee S.W., Jung K.H., Zhang D., An G.	Rice GLYCOSYLTRANSFERASE1 encodes a glycosyltransferase essential for pollen wall formation.	Plant Physiol.	161(2)	663-75	2013	_	OsGT1
37041	23096910	Li W.J., Zhang B., Huang G.W., Kang G.P., Liang M.Z., Chen L.B.	Chloroplast DNA polymorphism and evolutional relationships between Asian cultivated rice (Oryza sativa) and its wild relatives (O. rufipogon).	Genet. Mol. Res.	11(4)	4418-31	2012		
37045	23208453	Khurana R., Kathuria H., Mukhopadhyay A., Kapoor S., Tyagi A.K.	A 286 bp upstream regulatory region of a rice anther-specific gene, OSIPP3, confers pollen-specific expression in Arabidopsis.	Biotechnol. Lett.	35(3)	455-62	2013	_	OSIPP3
37047	23483945	Baek S.H., Shin W.C., Ryu H.S., Lee D.W., Moon E., Seo C.S., Hwang E., Lee H.S., Ahn M.H., Jeon Y., Kang H.J., Lee S.W., Kim S.Y., D'Souza R., Kim H.J., Hong S.T., Jeon J.S.	Creation of resveratrol-enriched rice for the treatment of metabolic syndrome and related diseases.	PLoS ONE	8(3)	e57930	2013		
37063	23199012	Fanata W.I., Lee K.H., Son B.H., Yoo J.Y., Harmoko R., Ko K.S., Ramasamy N.K., Kim K.H., Oh D.B., Jung H.S., Kim J.Y., Lee S.Y., Lee K.O.	N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa.	Plant J.	73(6)	966-79	2013		
37065	23417074	Septiningsih E.M., Ignacio J.C., Sendon P.M., Sanchez D.L., Ismail A.M., Mackill D.J.	QTL mapping and confirmation for tolerance of anaerobic conditions during germination derived from the rice landrace Ma-Zhan Red.	Theor. Appl. Genet.	126(5)	1357-66	2013		
37067	23411694	Xu J., Yang J., Wu Z., Liu H., Huang F., Wu Y., Carrie C., Narsai R., Murcha M., Whelan J., Wu P.	Identification of a dual-targeted protein belonging to the mitochondrial carrier family that is required for early leaf development in rice.	Plant Physiol.	161(4)	2036-48	2013	_	OsPAPST1
37068	23498867	Campos N., Casta??n S., Urreta I., Santos M., Torn? JM.	Rice transglutaminase gene: Identification, protein expression, functionality, light dependence and specific cell location.	Plant Sci.	205-206	97-110	2013	_	TGO, tgo
37070	23400832	Lin C.Y., Trinh N.N., Fu S.F., Hsiung Y.C., Chia L.C., Lin C.W., Huang H.J.	Comparison of early transcriptome responses to copper and cadmium in rice roots.	Plant Mol. Biol.	81(4-5)	507-22	2013		
37071	23365013	Zhang L.W., Huang J.F., Guo R.F., Li X.X., Sun W.B., Wang X.Z.	Spatio-temporal reconstruction of air temperature maps and their application to estimate rice growing season heat accumulation using multi-temporal MODIS data.	J Zhejiang Univ Sci B	14(2)	144-61	2013		
37073	23382235	Ryder L.S., Dagdas Y.F., Mentlak T.A., Kershaw M.J., Thornton C.R., Schuster M., Chen J., Wang Z., Talbot N.J.	NADPH oxidases regulate septin-mediated cytoskeletal remodeling during plant infection by the rice blast fungus.	Proc. Natl. Acad. Sci. U.S.A.	110(8)	3179-84	2013		
37075	23408830	Liu M.Y., Chen W.W., Xu J.M., Fan W., Yang J.L., Zheng S.J.	The role of VuMATE1 expression in aluminium-inducible citrate secretion in rice bean (Vigna umbellata) roots.	J. Exp. Bot.	64(7)	1795-804	2013		
37077	23527858	Yoeun S., Rakwal R., Han O.	Dual positional substrate specificity of rice allene oxide synthase-1: insight into mechanism of inhibition by type II ligand imidazole.	BMB Rep	46(3)	151-6	2013	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1
37079	23537632	Liu C., Teo Z.W., Bi Y., Song S., Xi W., Yang X., Yin Z., Yu H.	A conserved genetic pathway determines inflorescence architecture in Arabidopsis and rice.	Dev. Cell	24(6)	612-22	2013		
37084	23632162	Yi X., Du Z., Su Z.	PlantGSEA: a gene set enrichment analysis toolkit for plant community.	Nucleic Acids Res.	41(Web Server issue)	W98-103	2013		
37088	23591851	Wang Q., Liu Y., Hu J., Zhang Y., Xie K., Wang B., Tuyen le Q., Song Z., Wu H., Liu Y., Jiang L., Liu S., Cheng X., Wang C., Zhai H., Wan J.	Detection of Quantitative Trait Loci (QTLs) for Resistances to Small Brown Planthopper and Rice Stripe Virus in Rice Using Recombinant Inbred Lines.	Int J Mol Sci	14(4)	8406-21	2013		
37089	23633166	Lanka S.K., Stout M.J., Beuzelin J.M., Ottea J.A.	Activity of chlorantraniliprole and thiamethoxam seed treatments on life stages of the rice water weevil as affected by distribution of insecticides in rice plants.	Pest Manag. Sci.			2013		
37092	23605590	Songbai Z., Zhenguo D., Liang Y., Zhengjie Y., Kangcheng W., Guangpu L., Zujian W., Lianhui X.	Identification and characterization of the interaction between viroplasm-associated proteins from two different plant-infecting reoviruses and eEF-1A of rice.	Arch. Virol.	158(10)	2031-9	2013	RFA1	rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1
37094	23621499	Liu D., Cai X.	OsRRMh, a Spen-like Gene, Plays an Important Role during the Vegetative to Reproductive Transition in Rice.	J Integr Plant Biol	55(9)	876-87	2013	_,RFT1,_,RAP1B,HD3A	OsRRMh, RRMh,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsRRM,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
37095	23118960	Huang J., Zhao X., Weng X., Wang L., Xie W.	The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis.	PLoS ONE	7(10)	e48242	2012	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SE1,_	OsP, OsBBX9, OsCCT12, BBX9, CCT12,OsBBX21, BBX21,OsBBX6, BBX6,OsBBX20, OsE, OsCCT23, BBX20, CCT23,OsBBX13, BBX13,OsBBX15, OsCCT19, OsS, OsSTA162, BBX15, CCT19, STA162,OsBBX12, OsC, OsCCT16, BBX12, CCT16,OsBBX3, OsF, OsCCT05, BBX3, CCT05,OsBBX1, OsDBB3c, BBX1, DBB3c,OsBBX2, BBX2,OsBBX14, BBX14, OsDBB3b, DBB3b,OsBBX17, BBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsBBX24, BBX24,OsBBX28, OsCCT32, OsQ, BBX28, CCT32,OsBBX29, OsDBB1, BBX29, DBB1,OsBBX30, BBX30,OsBBX11, OsSTO, BBX11, STO,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,OsBBX4, OsSTH, BBX4, STH,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, BBX8, CCT09, Ghd2,OsBBX16, OsDBB3a, BBX16, DBB3a,OsBBX22, BBX22,OsBBX23, OsCCT27, BBX23, CCT27, OsR, OsCOL13, COL13,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsBBX25, OsG, OsCCT29, BBX25, CCT29,OsBBX19, BBX19, OsM, DTH2, qDTH-2, OsCCT22, CCT22,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, COL15, OsCOL15/OsBBX26, Hd1-3,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2
37097	23048130	Nguyen H.C., Hoefgen R., Hesse H.	Improving the nutritive value of rice seeds: elevation of cysteine and methionine contents in rice plants by ectopic expression of a bacterial serine acetyltransferase.	J. Exp. Bot.	63(16)	5991-6001	2012		
37104	22957820	Zhao S., Poulin L., Rodriguez-R LM., Serna N.F., Liu S.Y., Wonni I., Szurek B., Verdier V., Leach J.E., He Y.Q., Feng J.X., Koebnik R.	Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola.	Phytopathology	102(10)	948-56	2012		
37105	23311133	Zhou Z., Lin Z., Geng L., Su J., Shu C., Wang F., Zhu Y., Zhang J.	[Comparison of codon optimizations of cry1Ah1 gene in rice].	Sheng Wu Gong Cheng Xue Bao	28(10)	1184-94	2012		
37106	23078195	Verdier V., Triplett L.R., Hummel A.W., Corral R., Cernadas R.A., Schmidt C.L., Bogdanove A.J., Leach J.E.	Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae.	New Phytol.	196(4)	1197-207	2012	11N3,XA13	OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
37107	23072575	Samalova M., Johnson J., Illes M., Kelly S., Fricker M., Gurr S.	Nitric oxide generated by the rice blast fungus Magnaporthe oryzae drives plant infection.	New Phytol.	197(1)	207-22	2013		
37109	23160806	Sarkar N.K., Thapar U., Kundnani P., Panwar P., Grover A.	Functional relevance of J-protein family of rice (Oryza sativa).	Cell Stress Chaperones	18(3)	321-31	2013	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,NAL11,_,_,_,_,_,_,ISC26,BPH33,_,_,_,_,_,_,_,_,_	OsDjC62,OsDjC63,OsDjA1,OsDjA9,OsDjA11,OsDjA12,OsDjB1,OsDjB2,OsDjB3,OsDjB4,OsDjB5,OsDjB7,OsDjB8,OsDjC2,OsDjC3,OsDjC4,OsDjC5,OsDjC6,OsDjC7,OsDjC8,OsDjC11,OsDjC14,OsDjC17,OsDjC18,OsDjC19,OsDjA2,OsDjB9, OsSTA211,OsDjC36,OsDjC13,OsDjC56,OsDjC1,OsDjC60,OsDjC46,OsDjC47,OsDjA8,OsDjC16, OsP58A,OsDjC53,OsDjC12,OsDjA3,OsDjC27,OsDjA10,OsDjB6, OsERdj3B,OsDjA5,OsDjA7, OsDnaJ,OsDjC45,OsDjC9,OsDjC61,OsDjC21,OsDjC22,OsDjA4, YDJ1,OsDjC79, OsERdj7,OsDjC31,OsDjC32,OsDjC33,OsDjC34,OsDjC35,OsDjC41,OsDjC57,OsDjC42,OsDjC44,OsDjC49,OsDjC43, OsERdj2,OsDjC51,OsDjA6, DjA6,OsDjC50,OsDjC26,OsDjC25,OsDjC24,OsDjC23,OsDjC52,OsDjC78,OsDjC77,OsDjC59,OsDjC64,OsDjC76,OsDjC65,OsDjC67,OsDjC68,OsDjC69,OsDjC66,OsDjC70,OsDjC71,OsDjC72,OsDjC73,OsDjC74,OsDjC75,OsDjC58, DjC58,OsDjC81,OsDjC83,OsDjC20,OsDjC15, OsP58B,OsDjC82, DjC82, XB21,OsDjC29,OsDjC80, OsISC26,OsDjC10, DjC10, Bph33(t), Bph33,OsDjC28,OsDjC30,OsDjC37,OsDjC38,OsDjC39,OsDjC40,OsDjC54,OsDjC55,OsDjC48, DjC48
37113	23147221	Wang Y., Zhang X., Lu S., Wang M., Wang L., Wang W., Cao F., Chen H., Wang J., Zhang J., Tu J.	Inhibition of a basal transcription factor 3-like gene Osj10gBTF3 in rice results in significant plant miniaturization and typical pollen abortion.	Plant Cell Physiol.	53(12)	2073-89	2012	_,EIF3H,EIF3E,_,_,HSP82B,_,_	OsPPR676, PPR676,eIF-3h, OseIF3h,eIF-3e, OseIF3e,Osj3g2BTF3, BTF3b, Os03g2BTF3,Osj10gBTF3, 10gBTF3, BTF3a,OsHSP82, hsp82B, HSP82,Osj3g1BTF3, BTF3a, Os03g1BTF3,OsPPR920
37115	23155476	Zhang X., Li J., Liu A., Zou J., Zhou X., Xiang J., Rerksiri W., Peng Y., Xiong X., Chen X.	Expression profile in rice panicle: insights into heat response mechanism at reproductive stage.	PLoS ONE	7(11)	e49652	2012		
37120	23202292	Vijayakumar K.R., Gowda L.R.	Rice (Oryza sativa) lipase: molecular cloning, functional expression and substrate specificity.	Protein Expr. Purif.	88(1)	67-79	2013		
37121	23122787	Shimajiri Y., Ozaki K., Kainou K., Akama K.	Differential subcellular localization, enzymatic properties and expression patterns of gamma-aminobutyric acid transaminases (GABA-Ts) in rice (Oryza sativa).	J. Plant Physiol.	170(2)	196-201	2013		
37123	23139845	Kawahara Y., Oono Y., Kanamori H., Matsumoto T., Itoh T., Minami E.	Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction.	PLoS ONE	7(11)	e49423	2012		
37125	23145152	Shaik R., Ramakrishna W.	Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice.	PLoS ONE	7(11)	e49331	2012		
37126	23203890	Pan B., Sheng J., Sun W., Zhao Y., Hao P., Li X.	OrysPSSP: a comparative platform for small secreted proteins from rice and other plants.	Nucleic Acids Res.	41(Database issue)	D1192-8	2013		
37134	23251660	Desaki Y., Otomo I., Kobayashi D., Jikumaru Y., Kamiya Y., Venkatesh B., Tsuyumu S., Kaku H., Shibuya N.	Positive crosstalk of MAMP signaling pathways in rice cells.	PLoS ONE	7(12)	e51953	2012		
37139	23227161	Nischal L., Mohsin M., Khan I., Kardam H., Wadhwa A., Abrol Y.P., Iqbal M., Ahmad A.	Identification and comparative analysis of microRNAs associated with low-N tolerance in rice genotypes.	PLoS ONE	7(12)	e50261	2012		
37142	23243128	Wang M., Tang D., Luo Q., Jin Y., Shen Y., Wang K., Cheng Z.	brk1, a Bub1-related kinase, is essential for generating proper tension between homologous kinetochores at metaphase I of rice meiosis.	Plant Cell	24(12)	4961-73	2012	CENH3,SGO1,_	CENH3, CenH3,OsSGO1,BRK1
37144	23559856	Lin Y.R., Mok H.K., Wu Y.H., Liang S.S., Hsiao C.C., Huang C.H., Chiou S.H.	Comparative proteomics analysis of degenerative eye lenses of nocturnal rice eel and catfish as compared to diurnal zebrafish.	Mol. Vis.	19	623-37	2013		
37145	23324170	Sawaki N., Tsujimoto R., Shigyo M., Konishi M., Toki S., Fujiwara T., Yanagisawa S.	A Nitrate-Inducible GARP Family Gene Encodes an Auto-Repressible Transcriptional Repressor in Rice.	Plant Cell Physiol.	54(4)	506-17	2013	NIGT1	
37154	23331415	Wu J., Wang Y., Kim S.T., Kim S.G., Kang K.Y.	Characterization of a newly identified rice chitinase-like protein (OsCLP) homologous to xylanase inhibitor.	BMC Biotechnol.	13	4	2013	_,_	OsXIP, XIP,OsCLP, CLP
37155	23460823	Han C., Yin X., He D., Yang P.	Analysis of proteome profile in germinating soybean seed, and its comparison with rice showing the styles of reserves mobilization in different crops.	PLoS ONE	8(2)	e56947	2013		
37160	23314754	Naika M., Shameer K., Mathew O.K., Gowda R., Sowdhamini R.	STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.	Plant Cell Physiol.	54(2)	e8	2013		
37161	23194343	Nahar K., Kyndt T., Hause B., H?fte M., Gheysen G.	Brassinosteroids suppress rice defense against root-knot nematodes through antagonism with the jasmonate pathway.	Mol. Plant Microbe Interact.	26(1)	106-15	2013		
37162	23333961	Voothuluru P., Thompson H.J., Flint-Garcia SA., Sharp R.E.	Genetic variability of oxidase oxalate activity and elongation in water-stressed primary roots of diverse maize and rice lines.	Plant Signal Behav	8(3)		2013		
37164	23361014	Zheng A., Lin R., Zhang D., Qin P., Xu L., Ai P., Ding L., Wang Y., Chen Y., Liu Y., Sun Z., Feng H., Liang X., Fu R., Tang C., Li Q., Zhang J., Xie Z., Deng Q., Li S., Wang S., Zhu J., Wang L., Liu H., Li P.	The evolution and pathogenic mechanisms of the rice sheath blight pathogen.	Nat Commun	4	1424	2013		
37170	23602094	Shelley I.J., Nishiuchi S., Shibata K., Inukai Y.	SLL1, which encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in cell elongation in lateral roots via regulation of fatty acid content in rice.	Plant Sci.	207	12-7	2013		
37172	23442150	Mishra K.K., Vikram P., Yadaw R.B., Swamy B.M., Dixit S., Cruz M.T., Maturan P., Marker S., Kumar A.	qDTY12.1: a locus with a consistent effect on grain yield under drought in rice.	BMC Genet.	14	12	2013		
37179	23625520	Wang G., Li H., Cheng Z., Jin W.	A novel translocation event leads to a recombinant stable chromosome with interrupted centromeric domains in rice.	Chromosoma	122(4)	295-303	2013		
37180	23621326	Nagasawa N., Hibara K.I., Heppard E.P., Vander Velden KA., Luck S., Beatty M., Nagato Y., Sakai H.	GIANT EMBRYO, encoding CYP78A13, affects size balance between embryo and endosperm in rice.	Plant J.	75(4)	592-605	2013	RE1,GE1,RE2	re1,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES,re2
37187	23627500	Campo S., Peris-Peris C., Sir? C., Moreno A.B., Donaire L., Zytnicki M., Notredame C., Llave C., San Segundo B.	Identification of a novel microRNA (miRNA) from rice that targets an alternatively spliced transcript of the Nramp6 (Natural resistance-associated macrophage protein 6) gene involved in pathogen resistance.	New Phytol.	199(1)	212-27	2013	MIR7693,MIR7695,MIR1437B,MIR7694,MIR7692,NRAMP6	miR7693, osa-miR7693, osa-MIR7693,miR7695, osa-miR7695, osa-MIR7695,miR1437b, osa-miR1437b, osa-MIR1437b,miR7694, osa-miR7694, osa-MIR7694,miR7692, osa-miR7692, osa-MIR7692,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6
37190	23589608	Yang D.L., Yang Y., He Z.	Role of plant hormones and their cross-talks in rice immunity.	Mol Plant	6(3)	675-85	2013	_,WRKY45,_,GID1,SLR1,NH1,MSRMK2	NRR, NRR1,OsWRKY45,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
37191	23548780	Hudson D., Guevara D.R., Hand A.J., Xu Z., Hao L., Chen X., Zhu T., Bi Y.M., Rothstein S.J.	Rice Cytokinin GATA Transcription Factor1 Regulates Chloroplast Development and Plant Architecture.	Plant Physiol.	162(1)	132-44	2013	CGA1	Cga1, OsCga1, OsCGA1, OsGATA11, GATA11
37192	23578473	Yang W., Duan L., Chen G., Xiong L., Liu Q.	Plant phenomics and high-throughput phenotyping: accelerating rice functional genomics using multidisciplinary technologies.	Curr. Opin. Plant Biol.	16(2)	180-7	2013		
37193	23597919	Wang X., Ike M., Shiroma R., Tokuyasu K., Sakakibara Y.	Expression of neutral beta-glucosidase from Scytalidium thermophilum in Candida glabrata for ethanol production from alkaline-pretreated rice straw.	J. Biosci. Bioeng.	116(3)	362-5	2013		
37199	22930426	Rana R.M., Dong S., Ali Z., Huang J., Zhang H.S.	Regulation of ATG6/Beclin-1 homologs by abiotic stresses and hormones in rice (Oryza sativa L.).	Genet. Mol. Res.	11(4)	3676-87	2012	ATG6A,ATG6B,ATG6C	OsATG6a,OsATG6b, OsATG6c,OsATG6c, OsATG6b
37204	23278238	Xuan Y.H., Priatama R.A., Huang J., Je B.I., Liu J.M., Park S.J., Piao H.L., Son D.Y., Lee J.J., Park S.H., Jung K.H., Kim T.H., Han C.D.	Indeterminate domain 10 regulates ammonium-mediated gene expression in rice roots.	New Phytol.	197(3)	791-804	2013	_,GDH2,AMT1;2	OsIDD10,OsGDH2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
37205	23233223	Naren, Zhang P., Ma D., Wang Y., Li S., Yin L.	Overexpression of OsDPR, a novel rice gene highly expressed under iron deficiency, suppresses plant growth.	Sci China Life Sci	55(12)	1082-91	2012	_	OsDPR
37206	23264228	Sarkar N.K., Kundnani P., Grover A.	Functional analysis of Hsp70 superfamily proteins of rice (Oryza sativa).	Cell Stress Chaperones	18(4)	427-37	2013		
37207	23341965	Daebeler A., Gansen M., Frenzel P.	Methyl fluoride affects methanogenesis rather than community composition of methanogenic archaea in a rice field soil.	PLoS ONE	8(1)	e53656	2013		
37208	23319183	He Y., Zhang Y., Wang S., Zeng H., Ding Y.	Characterization of a novel glutelin subunit OsGluBX by the experimental approach and molecular dynamics simulations.	Appl. Biochem. Biotechnol.	169(5)	1482-96	2013	GLUBX	OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1
37209	23294545	Choe Y.H., Kim Y.S., Kim I.S., Bae M.J., Lee E.J., Kim Y.H., Park H.M., Yoon H.S.	Homologous expression of gamma-glutamylcysteine synthetase increases grain yield and tolerance of transgenic rice plants to environmental stresses.	J. Plant Physiol.	170(6)	610-8	2013	_	OsECS, ECS
37212	23338673	Li Y., Chen W., Shi Y., Liang X.	Molecular cloning and evolutionary analysis of the HOG-signaling pathway genes from Saccharomyces cerevisiae rice wine isolates.	Biochem. Genet.	51(3-4)	296-305	2013		
37213	23386293	Purkayastha A., Sharma S., Dasgupta I.	Virus-induced gene silencing for rice using agroinoculation.	Methods Mol. Biol.	975	33-45	2013		
37216	23613738	Zhai R., Feng Y., Zhan X., Shen X., Wu W., Yu P., Zhang Y., Chen D., Wang H., Lin Z., Cao L., Cheng S.	Identification of Transcriptome SNPs for Assessing Allele-Specific Gene Expression in a Super-Hybrid Rice Xieyou9308.	PLoS ONE	8(4)	e60668	2013		
37221	23531043	Zhou J., Yang Y., Wang X., Yu F., Yu C., Chen J., Cheng Y., Yan C., Chen J.	Enhanced transgene expression in rice following selection controlled by weak promoters.	BMC Biotechnol.	13	29	2013		
37225	23430047	Yuan M., Wang S.	Rice MtN3/Saliva/SWEET Family Genes and Their Homologs in Cellular Organisms.	Mol Plant	6(3)	665-74	2013		
37227	23613580	Rodrigues J.A., Ruan R., Nishimura T., Sharma M.K., Sharma R., Ronald P.C., Fischer R.L., Zilberman D.	Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm.	Proc. Natl. Acad. Sci. U.S.A.	110(19)	7934-9	2013	_,AGO14,_,TA2	OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsAGO14,ROS1B,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1 
37228	23613199	Liu Y., Cui S., Wu F., Yan S., Lin X., Du X., Chong K., Schilling S., Thei?en G., Meng Z.	Functional Conservation of MIKC*-Type MADS Box Genes in Arabidopsis and Rice Pollen Maturation.	Plant Cell	25(4)	1288-303	2013	MADS62,MADS63,MADS68	OsMADS62,OsMADS63,OsMADS68
37232	23034647	Huang X., Kurata N., Wei X., Wang Z.X., Wang A., Zhao Q., Zhao Y., Liu K., Lu H., Li W., Guo Y., Lu Y., Zhou C., Fan D., Weng Q., Zhu C., Huang T., Zhang L., Wang Y., Feng L., Furuumi H., Kubo T., Miyabayashi T., Yuan X., Xu Q., Dong G., Zhan Q., Li C., Fujiyama A., Toyoda A., Lu T., Feng Q., Qian Q., Li J., Han B.	A map of rice genome variation reveals the origin of cultivated rice.	Nature	490(7421)	497-501	2012		
37233	23201415	Shao C., Ma X., Xu X., Meng Y.	Identification of the highly accumulated microRNA*s in Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa).	Gene	515(1)	123-7	2013	MIR396A,MIR5159,MIR1428F,MIR2121A,MIR1433,MIR810A,MIR169g,MIR396B,MIR169P,MIR5533	miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,miR5159, osa-miR5159, osa-MIR5159,miR1428f, osa-miR1428f, osa-MIR1428f,miR2121a, osa-miR2121a, osa-MIR2121a,miR1433, osa-miR1433, osa-MIR1433,miR810a, osa-miR810a, osa-MIR810a,MIR-169g, osa-MIR169g,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR169p, osa-miR169p,miR5533, osa-miR5533, osa-MIR5533
37238	23362379	Fang S., Clark R.T., Zheng Y., Iyer-Pascuzzi AS., Weitz J.S., Kochian L.V., Edelsbrunner H., Liao H., Benfey P.N.	Genotypic recognition and spatial responses by rice roots.	Proc. Natl. Acad. Sci. U.S.A.	110(7)	2670-5	2013		
37243		Mach J.	The Direct Approach: Resistance Genes Team up to Recognize Different Fungal Effectors in Rice.	Plant Cell	25(4)	1189	2013	_,_	Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5,Os11gRGA4, RGA4
37245	23619785	Ma H.	A battle between genomes in plant male fertility.	Nat. Genet.	45(5)	472-3	2013	_,_,RF3,_	Rf4, Rf-4, PPR782a, PPR9, PPR3,OsCOX11, COX11,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,WA352
37246	23580618	Topp C.N., Iyer-Pascuzzi AS., Anderson J.T., Lee C.R., Zurek P.R., Symonova O., Zheng Y., Bucksch A., Mileyko Y., Galkovskyi T., Moore B.T., Harer J., Edelsbrunner H., Mitchell-Olds T., Weitz J.S., Benfey P.N.	3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture.	Proc. Natl. Acad. Sci. U.S.A.	110(18)	E1695-704	2013		
37247	0	Yeu S.Y., Park B.S., Sang W.G., Choi Y.D., Kim M.C., Song J.T., Paek N-C, Koh H-J, Seo H.S.	The Serine proteinase inhibitor OsSerpin Is a Potent Tillering Regulator in Rice	Journal of Plant Biology	50(5)	600-604	2007	_,FC1	OsSRP-LRS, OsSPN, OrysaZxa,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
37248	18060440	Thomas H Roberts, J?Crn Hejgaard	Serpins in plants and green algae.	Funct. Integr. Genomics	8(1)	1-27	2008	_,_,_,_,_,_,_,_,_,_,_,_,_	OsSRP-GMS, OrysaZ5,OsSRP-PSG, OrysaZ8,OsSRP-FLC, OrysaZ2b,OsSRP-GRA, OrysaZ6b,OsSRP-GAA, OrysaZ6a,OsSRP-FRS, OrysaZxb,OsSRP-LGC, OrysaZ1,OsSRP-QKG, OrysaZ12,OsSRP-FAS, OrysaZ6c,OsSRP-PTY, OrysaZ10,OsSRP-LLS, OrysaZ2a,OsSRP-LRS, OsSPN, OrysaZxa,OsSRP-PGY, OrysaZ11
37249	18540109	Kumagai T., Ito S., Nakamichi N., Niwa Y., Murakami M., Yamashino T., Mizuno T.	The common function of a novel subfamily of B-Box zinc finger proteins with reference to circadian-associated events in Arabidopsis thaliana.	Biosci. Biotechnol. Biochem.	72(6)	1539-49	2008	_,_,_,_,_,_	OsBBX1, OsDBB3c, BBX1, DBB3c,OsBBX29, OsDBB1, BBX29, DBB1,OsBBX4, OsSTH, BBX4, STH,OsBBX11, OsSTO, BBX11, STO,OsBBX16, OsDBB3a, BBX16, DBB3a,OsBBX14, BBX14, OsDBB3b, DBB3b
37250	15055541	Chan-Ho Park, Kim S., Ju-Young Park, Il-Pyung Ahn, Nam-Soo Jwa, Kyung-Hwan Im, Yong-Hwan Lee	Molecular characterization of a pathogenesis-related protein 8 gene encoding a class III chitinase in rice.	Mol. Cells	17(1)	144-50	2004	_,_	Oschib2,Oschib1, PR-8, PR8, OsPR8
37251	12466527	Pandey R., Andreas M??ller, Carolyn A Napoli, David A Selinger, Craig S Pikaard, Eric J Richards, Bender J., David W Mount, Richard A Jorgensen	Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.	Nucleic Acids Res.	30(23)	5036-55	2002	_,HDT1,_	osHDA702,OsHDT1, HDT701,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2
37252	0	Oliver S.N., Dongen J.V., Alfred S.C., Mamun E, Zhao X, Saini H.S., Fernandes S.F., Blanchard C.L., Sutton B.G., Geigenberger P, Dennis E.S., Dolferus R	Cold-induced repression of the rice anther-specific cell wall invertase gene OSINV4 is correlated with sucrose accumulation and pollen sterility	Plant, Cell and Environment	28	1534-1551	2005	_,_,CIN1,_,_	OSINV4, OsINV4, INV4, OsCIN3,OSINV2, OsINV2, OsVIN1,OSCIN1, OsCIN1,OSINV3, OsINV3, INV3, OsVIN2, VIN2, VINV,OSINV1, OsINV1, INV1, OsCIN7, OsCIN8
37253	17379695	Tokunaga T., Esaka M.	Induction of a novel XIP-type xylanase inhibitor by external ascorbic acid treatment and differential expression of XIP-family genes in rice.	Plant Cell Physiol.	48(5)	700-14	2007	_,_,RIXI 	riceXIP,OsXIP, XIP,C10701
37254	15794761	Durand A., Hughes R., Roussel A., Flatman R., Henrissat B., Juge N.	Emergence of a subfamily of xylanase inhibitors within glycoside hydrolase family 18.	FEBS J.	272(7)	1745-55	2005	RIXI 	C10701
37255	22267741	Withers S., Lu F., Kim H., Zhu Y., Ralph J., Wilkerson C.G.	Identification of grass-specific enzyme that acylates monolignols with p-coumarate.	J. Biol. Chem.	287(11)	8347-55	2012	_	OsAT4, OsAt4, AT4, PMT, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1
37256	12834401	Bao-Cai Tan, Leina M Joseph, Wen-Tao Deng, Liu L., Qin-Bao Li, Cline K., Donald R McCarty	Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.	Plant J.	35(1)	44-56	2003	NCED3,NCED2	OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OSNCED2, OsNCED2, OsNCED5, NCED5
37257	15817418	Ivan A Paponov, William D Teale, Trebar M., Blilou I., Palme K.	The PIN auxin efflux facilitators: evolutionary and functional perspectives.	Trends Plant Sci.	10(4)	170-7	2005	PIN4,PIN5B,PIN5A,PIN9,LRA1,PIN1B,PIN10A,PIN1A,PIN10B	OsPIN4,PIN5C, OsPIN5c, OsPIN5b,OsPIN5a,OsPIN9,OsPIN2, PIN2, OsLRA1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,PIN3B, OsPIN3b, OsPIN10b
37258	16844839	Carraro N., Forestan C., Canova S., Traas J., Varotto S.	ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize.	Plant Physiol.	142(1)	254-64	2006	PIN4,PIN5A,PIN5B,PIN1B,PIN10A,PIN1A,LRA1,PIN9,PIN10B	OsPIN4,OsPIN5a,PIN5C, OsPIN5c, OsPIN5b,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsPIN2, PIN2, OsLRA1,OsPIN9,PIN3B, OsPIN3b, OsPIN10b
37259	20528920	ChenJia Shen, YouHuang Bai, SuiKang Wang, SaiNa Zhang, YunRong Wu, Chen M., DeAn Jiang, YanHua Qi	Expression profile of PIN, AUX/LAX and PGP auxin transporter gene families in Sorghum bicolor under phytohormone and abiotic stress.	FEBS J.	277(14)	2954-69	2010	_,MDR1,MDR5,MDR9,MDR3,ABCB18,ABCB19,MDR15,PIN5A,ABCB12,MDR7,ABCB13,MDR12,MDR10,PIN1D,PIN5C,PIN8,PIN10B,PIN1C,MDR6,PIN5B,MDR13,PIN1A,_,PIN10A,_,_,MDR8,_,MDR11,PIN9,PIN1B,LRA1,ABCB10,MDR14,MDR16,ABCB9,MDR17,MDR4	OsLAX5, OsAUX5, LAX5, AUX5,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2,OsABCB19, OsPGP19,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsPIN5a,OsABCB12, OsPGP12, PGP12,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11,OsABCB13, OsPGP13,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsPIN1D, OsPIN1d,PIN5B, OsPIN5b, OsPIN5c,OsPIN8,PIN3B, OsPIN3b, OsPIN10b,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,PIN5C, OsPIN5c, OsPIN5b,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsLAX2, OsRAU2, OsAUX3, LAX2, RAU2, AUX3 ,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsPIN9,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1,OsABCB10, OsPGP10,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB9, OsPGP9, OsISC33,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCB1, ABCB1, OsPGP1, OsMDR4
37260	0	Shams F.D., Kuddus M.M.A., Nasiruddin K.M., Begum S.N., Islam M.M.	Genetic Analysis of Aromatic and Quality Rice Germplasm using Microsatellite Markers	Plant Tissue Cult. & Biotech.	22(1)	65-71	2012	SK2(T)(SCL, FGR)	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 
37261	19947981	Yoshida T., Fujita Y., Sayama H., Kidokoro S., Maruyama K., Mizoi J., Shinozaki K., Kazuko Yamaguchi-Shinozaki	AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation.	Plant J.	61(4)	672-85	2010	BZIP72,BZIP23,BZIP46	OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46
37262	16598073	Ji Hyun Yang, So Jeong Han, Eun Kyung Yoon, Woo Sung Lee	'Evidence of an auxin signal pathway, MicroRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells'.	Nucleic Acids Res.	34(6)	1892-9	2006	ARF8,MIR167A,GH3-2,ARF6A,MIR167B	OsARF8, OsARF12, ARF12,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p,OsGH3-2, OsGH3.2, GH3.2,OsARF6a, OsARF6, ARF6,miR167b, osa-miR167b
37263	12101121	Brenda J Reinhart, Earl G Weinstein, Matthew W Rhoades, Bartel B., David P Bartel	MicroRNAs in plants.	Genes Dev.	16(13)	1616-26	2002	MIR160A,MIR171,MIR156A,MIR169,MIR162A,MIR167A,MIR166A,MIR164A	miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,miR162a, osa-miR162a, osa-MIR162a,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR164a, osa-miR164a
37264	12202040	Matthew W Rhoades, Brenda J Reinhart, Lee P Lim, Christopher B Burge, Bartel B., David P Bartel	Prediction of plant microRNA targets.	Cell	110(4)	513-20	2002	MIR171,MIR169	miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a
37265	15856348	Jain M., Kaur N., Akhilesh K Tyagi, Jitendra P Khurana	The auxin-responsive GH3 gene family in rice (Oryza sativa).	Funct. Integr. Genomics	6(1)	36-46	2006	GH3-7,JAR1,GH3-11,JAR2,GH3-4,GH3-6,LC1,GH3-9,GH3-10,JAR3,GH3-8,GH3-2	OsGH3-7,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsGH3-11, OsGH3.11, GH3.11,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsGH3-4, OsGH3.4, GH3.4,OsGH3-6,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsGH3-9,OsGH3-10,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsGH3-2, OsGH3.2, GH3.2
37266	20129631	S??lvia B Rosa, Andr??ia Caverzan, Felipe K Teixeira, Lazzarotto F., Joaquim A G Silveira, S??rgio Luiz Ferreira-Silva, Jo?o Abreu-Neto, Rog??rio Margis, M??rcia Margis-Pinheiro	Cytosolic APx knockdown indicates an ambiguous redox responses in rice.	Phytochemistry	71(5-6)	548-58	2010	APX2,APX1	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
37267	20644566	Shu-Qing Zhao, Hu J., Long-Biao Guo, Qian Q., Hong-Wei Xue	Rice leaf inclination2, a VIN3-like protein, regulates leaf angle through modulating cell division of the collar.	Cell Res.	20(8)	935-47	2010	_,_,_,LC2	OsVIL4, OsVIL1,OsVIL3, OsVIL4, VIL1,OsVIL1, VIL1, OsVIL2,OsLC2, OsVIL2, VIL2, OsVIL3
37268	0	Yoshie Y, Goto K, Takai R, Iwano M, Takayama S, Isogai A, Che F.S.	Function of the rice gp91phox homologs OsrbohA and OsrbohE genes in ROS-dependent plant immune responses	Plant Biotechnology	22(2)	127-135	2005	CHT1,RBOHF,RBOHG,RBOHC,_	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,rbohA, OsrbohA, Os rbohA, OsRbohA, OsRboh2
37269	12582522	Abe T., Niiyama H., Sasahara T.	Cloning of cDNA for UDP-glucose pyrophosphorylase and the expression of mRNA in rice endosperm.	Theor. Appl. Genet.	105(2-3)	216-221	2002	UGP1	Ugp1, OsUgp1, UGP2, UGP3
37270	9435140	A Shintani, H Kato, T Minamikawa	Hormonal regulation of expression of two cysteine endopeptidase genes in rice seedlings.	Plant Cell Physiol.	38(11)	1242-8	1997	_	REP-1, OsSAG12-1, SAG12-1, OsEnS-21
37271	15549374	Cao X., Li K., Sang-Gon Suh, Guo T., Philip W Becraft	Molecular analysis of the CRINKLY4 gene family in Arabidopsis thaliana.	Planta	220(5)	645-57	2005	_,_,_,_,_	OsCRR1,OsCRR2,OsCRR3, CCR3,OsCR4,OsCRR4
37272	15619004	E Gelhaye, N Rouhier, N Navrot, J P Jacquot	The plant thioredoxin system.	Cell. Mol. Life Sci.	62(1)	24-35	2005	TRXH4,TRXH5,TRXH,TRXH2,TRXH8	OsTRXh4, OsTrx10, Os3, OsTrxh3,OsTRXh5, OsTrx24, Os4, OsTrxh4,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsTRXh2, Os2, OsTrxh2,OsTRXh8, OsTrx18, Os5, OsTrxh5
37273	9599802	Y Ishiwatari, T Fujiwara, K C McFarland, K Nemoto, H Hayashi, M Chino, W J Lucas	Rice phloem thioredoxin h has the capacity to mediate its own cell-to-cell transport through plasmodesmata.	Planta	205(1)	12-22	1998	TRXH	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1
37274	16170456	Chardon F., Damerval C.	Phylogenomic analysis of the PEBP gene family in cereals.	J. Mol. Evol.	61(5)	579-90	2005	RCN2,_,_,FTL7,FTL9,FTL8,FTL11,FTL13,FTL6,FTL4,FTL5,FTL12,FTL1,RCN1,FTL10,RFT1,HD3A,RCN3,RCN4	Rcn2, OsRCN2,OsMFT1, MFT1,OsMFT2, MFT2, OsMFT,FT-L 7, OsFTL7,FT-L 9, OsFTL9,FT-L 8, OsFTL8,OsFTL11,OsFTL13,FT-L 6, OsFTL6, FT-L6,OsFT, osFT, FT-L 4, OsFTL4, FT-L4,FT-L 5, OsFTL5, FT-L5,OsFTL12, FT-L11,FTL, FT-L1, OsFTL1, FTL1,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1,OsFTL10,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1,Rcn4, OsRCN4
37275	0	Sharma H.C., Crouch J.H., Sharma K.K., Seetharama N, Hash C.T.	Applications of biotechnology for crop improvement: prospects and constraints.	Plant Science	163	381-395	2002	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
37276	0	Kumari A., A.Das, B.N.Devanna, Thakur S., P.K.Singh, N.K.Singh, T.R.Sharma	Mining of rice blast resistance gene Pi54 shows effect of single nucleotide polymorphisms on phenotypic expression of the alleles	Eur. J. Plant Pathol	137	55-65	2013	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
37277	0	Rai A.K., Kumar S.P., Gupta S.K., Gautam N., Singhm N.K., Sharma T.R.	Functional complementation of rice blast resistance gene Pi-kh(Pi54) conferring resistance to diverse strains of Magnaporthe oryzae	J. Plant Biochem. Biotechnol.	20	55-65	2011	PIKH	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh
37279	0	Li Y.B., Wu C.J., Jiang G.H., Wang L.Q., He Y.Q.	Dynamic analyses of rice blast resistance for the assessment of genetic and environmental effects.	Plant Breeding	126	541-547	2007	PIKM	Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2
37280	15247399	David L Remington, Todd J Vision, Thomas J Guilfoyle, Jason W Reed	Contrasting modes of diversification in the Aux/IAA and ARF gene families.	Plant Physiol.	135(3)	1738-52	2004	IAA13,IAA9	OsIAA13, OsIAA1, OsiIAA1,OsIAA9, OsIAA2
37281	19665012	Ken-Ichiro Hibara, Obara M., Hayashida E., Abe M., Ishimaru T., Satoh H., Jun-Ichi Itoh, Nagato Y.	The ADAXIALIZED LEAF1 gene functions in leaf and embryonic pattern formation in rice.	Dev. Biol.	334(2)	345-54	2009	ADL1,ADS	adl1,ads
37282	20331531	Oono Y., Wakasa Y., Hirose S., Yang L., Sakuta C., Takaiwa F.	Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide.	Plant Biotechnol. J.	8(6)	691-718	2010	_,_,_,_,_,_,_,_,_,_,_,_	PDIL1;3, PDIL1-3, PDIL 1-3, OsPDIL1-3,PDIL1;4, PDIL1-4, PDIL 1-4, OsPDIL1-4,PDIL1;5, PDIL1-5, PDIL 1-5, OsPDIL1-5,PDIL5;1, PDIL5-1, PDIL 5-1, OsPDIL5-1,PDIL2;1, OsPDIL2;1, PDIL2-1, OsPDIL2-1,PDIL2;3, PDIL2-3, PDIL 2-3, OsPDIL2-3, PDIL 2-3,PDIL5;2, OsPDIL5;2, PDIL5-2, OsPDIL5-2,PDIL2;2, PDIL2-2, PDIL 2-2, OsPDIL2-2,OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,PDIL5;3, PDIL5-3, PDIL 5-3, OsPDIL5-3,PDIL5;4, PDIL5-4, PDIL 5-4, OsPDIL5-4,PDIL1;2, PDIL1-2, PDIL 1-2, OsPDIL1-2
37283	20532512	Takahashi Y., Cong R., G H M Sagor, Niitsu M., Berberich T., Kusano T.	Characterization of five polyamine oxidase isoforms in Arabidopsis thaliana.	Plant Cell Rep.	29(9)	955-65	2010	PAO5,PAO3,PAO4,PAO1,PAO7,PAOB	OsPAO5, OsAO2, AO2,OsPAO3, OsAO3, AO3,OsPAO4, OsAO1, AO1,OsPAO1, OsAO4, AO4,OsPAO7, OsPAO3, PAO3,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2
37284	20561251	Hyeong Cheol Park, Kim H., Sung Cheol Koo, Hee Jin Park, Mi Sun Cheong, Hong H., Baek D., Woo Sik Chung, Doh Hoon Kim, Ray A Bressan, Sang Yeol Lee, Hans J Bohnert, Dae-Jin Yun	Functional characterization of the SIZ/PIAS-type SUMO E3 ligases, OsSIZ1 and OsSIZ2 in rice.	Plant Cell Environ.	33(11)	1923-34	2010	SIZ2,SIZ1	OsSIZ2,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 
37285	20193128	Chaikam V., Dale T Karlson	Response and transcriptional regulation of rice SUMOylation system during development and stress conditions.	BMB Rep	43(2)	103-9	2010	SIZ2,SIZ1,_,UBC3,_,_,SUMO3,SAE2,SUMO2,SUMO1	OsSIZ2,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 ,OsSAE1a,OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2,OsSUMO3,OsSAE2, OsSAE2.1, OsSAE2.2, OsSAE2.3,OsSUMO2,smt3, SMT3, OsSUMO1
37286	18299247	Paul J Verrier, Bird D., Burla B., Dassa E., Forestier C., Geisler M., Klein M., Kolukisaoglu U., Lee Y., Martinoia E., Murphy A., Philip A Rea, Samuels L., Schulz B., Edgar J Spalding, Yazaki K., Frederica L Theodoulou	Plant ABC proteins--a unified nomenclature and updated inventory.	Trends Plant Sci.	13(4)	151-9	2008	STAR1,ABCG6,ABCG3,PDR5,ABCB24,ABCI9,ABCI11,ABCI13,ABCI14,ABCI15,ABCI16,PDR17,PDR8,MRP7,MRP11,MRP16,PDR7,PDR12,PDR23,ABCA4,ABCD1,ABCD2,ABCD3,ABCI8,PDR1,ABCG5,PDR2,ABCB23,PDR6,PDR22,_,MRP9,ABCE1,ABCF1,ABCF2,ABCF3,ABCF4,ABCF5,ABCG11,ABCG12,ABCG14,ABCB27,ABCI10,MRP4,PDR14,PDR21,MRP6,MDR5,MDR11,ABCB19,ABCG18,ABCG19,ABCG24,ABCG23,ABCG29,ABCG30,ABCI1,ABCI5,ABCI3_1,_,ABCA2,ABCG21,PDR11,PDR10,ABCG2,ABCA1,ABCA6,ABCA3,ABCI2,ABCG16,ABCG28,ABCI7,ABCI6,MRP1,ABCG26,ALS1,PDR19,ABCB12,MDR12,MDR10,ABCG15,MRP13,ABCG17,MDR9,PDR3,MRP17,MRP12,MRP5,MRP14,ABCA5,MRP15,MDR13,MRP10,PDR15,MDR6,MDR3,ABCG7,ABCF6,MRP3,ABCG8,ABCG25,ABCB26,PDR16,MRP2,ABCI4,ABCG4,ABCG13,ABCG20,ABCG27,ABCI3,ABCB9,ABCB10,MDR15,MDR14,ABCB13,ABCG10,MDR16,ABCB18,MDR1,MDR8,MDR17,MDR4,ABCG22,ABCE2,MRP8,MDR7,ABCG1,ABCG9	OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsABCG6,OsABCG3,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,OsABCB24,OsABCI9, OsABCI9_1, OsABCI9_2,OsABCI11,OsABCI13,OsABCI14,OsABCI15,OsABCI16, OsABCI16_1, OsABCI16_2,OsABCG44, OsPDR17,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4,OsABCC7, OsMRP7,OsABCC11, OsMRP11,OsABCC16, OsMRP16,OsABCG39, OsPDR7,OsABCG42, OsPDR12, OsABCG42_1, OsABCG42_2,OsABCG50, OsPDR23, OsABCG50_1, OsABCG50_2,OsABCA4,OsABCD1, OsABCD1_1, OsABCD1_2,OsABCD2,OsABCD3,OsABCI8, OsABCI9, ABCI9,OsABCG45, OsPDR1, FCO1,OsABCG5,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,OsABCB23, OsISC32, OsATM3, ATM3,OsPDR6, OsABCG31, OsABCG31_1,OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2,OsPDR20, RDR20,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 ,OsABCE1, OsABCE1_1, OsABCE1_2,OsABCF1, OsABCF1_1, OsABCF1_2, OsABCF1_3,OsABCF2,OsABCF3,OsABCF4,OsABCF5, OsABCF5_1, OsABCF5_2, OsABCF5_3,OsABCG11,OsABCG12,OsABCG14,OsABCB27,OsABCI10, OsABCI10_1, OsABCI10_2,OsABCC4, ABCC4, OsMRP4,OsABCG33, OsPDR14,OsABCG46, OsPDR21,OsABCC6, OsMRP6,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsABCB19, OsPGP19,OsABCG18,OsABCG19, OsABCG19_1, OsABCG19_2,OsABCG24,OsABCG23,OsABCG29,OsABCG30,OsABCI1,OsABCI5, OsISC16,OsABCI3_1, OsABCI3_2, OsISC17,OsABCG40, OsPDR4, PDR4,OsABCA2, OsISC27,OsABCG21, STR1,OsABCG35, OsPDR11, OsPDR2,OsABCG34, OsPDR10, OsPDR1,OsABCG2,OsABCA1,OsABCA6,OsABCA3,OsABCI2,OsABCG16, OsABCG16_1, OsABCG16_2, OsSTA183,OsABCG28, OsSTA255,OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2,OsABCI6, OsABCI7, ABCI7,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsABCG26,OsALS1, OsABCB25, ABCB25,OsABCG47, OsPDR19,OsABCB12, OsPGP12, PGP12,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsABCC13, OsMRP13, OsMRP5,OsABCG17,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCG48, OsPDR3,OsABCC17, OsMRP17,OsABCC12, OsMRP12,OsABCC5, OsMRP5,OsABCC14, OsMRP14, OsABCC14-1, OsABCC14-2,OsABCA5,OsABCC15, OsMRP15,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsABCC10, OsMRP10,OsABCG38, OsPDR15,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsABCG7, OsABCG7_1, OsABCG7_2,OsABCF6,OsABCC3, OsMRP3,OsABCG8,OsABCG25, OsABCG25_1, OsABCG25_2,OsABCB26,OsABCG32, OsPDR16,OsABCC2, OsMRP2,OsABCI4, OsISC18,OsABCG4,OsABCG13, OsABCG13_1, OsABCG13_2,OsABCG20,OsABCG27,OsABCI3,OsABCB9, OsPGP9, OsISC33,OsABCB10, OsPGP10,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsABCB13, OsPGP13,OsABCG10,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCB1, ABCB1, OsPGP1, OsMDR4,OsABCG22,OsABCE2, RLI,OsABCC8, OsMRP8a, OsMRP8a, OsMRP8,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11,OsABCG1,OsABCG9
37287	20140455	Yamamoto E., Takashi T., Morinaka Y., Lin S., Wu J., Matsumoto T., Kitano H., Matsuoka M., Ashikari M.	Gain of deleterious function causes an autoimmune response and Bateson-Dobzhansky-Muller incompatibility in rice.	Mol. Genet. Genomics	283(4)	305-15	2010	HBD2,HBD3	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1,hbd3
37288	14529272	Cha Young Kim, Yoon Duck Koo, Jing Bo Jin, Byeong Cheol Moon, Chang Ho Kang, Sun Tae Kim, Byung Ouk Park, So Young Lee, Man Lyang Kim, Hwang I., Kyu Young Kang, Jeong Dong Bahk, Sang Yeol Lee, Moo Je Cho	Rice C2-domain proteins are induced and translocated to the plasma membrane in response to a fungal elicitor.	Biochemistry	42(40)	11625-33	2003	RPP17	Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b
37289	17196101	Opassiri R., Pomthong B., Onkoksoong T., Akiyama T., Esen A., James R Ketudat Cairns	Analysis of rice glycosyl hydrolase family 1 and expression of Os4bglu12 beta-glucosidase.	BMC Plant Biol.	6	33	2006	BGLU11,BGLU24,BGLU10,BGLU26,BGLU27,BGLU28,BGLU29,BGLU30,BGLU35,BGLU37,BGLU8,BGLU9,BGLU1,BGLU17,BGLU19,BGLU2,BGLU20,BGLU21,BGLU22,BGLU23,BGLU3,BGLU25,BGLU32,BGLU34,BGLU38,BGLU39,BGLU40,BGLU16,BGLU14,BGLU36,BGLU31,BGLU18,BGLU4,BGLU12,BGLU13,BGLU5,BGLU33,BGLU6,BGLU7,BGLU15	Os4bglu11, Os4BGlu11,Os6bglu24, Os6BGlu24,Os4bglu10, Os4BGlu10,Os7bglu26, Os7BGlu26,Os8bglu27, OsBGlu27,Os8bglu28, OsBGlu28,Os9bglu29, OsBGlu29 ,Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2,Os11bglu35, OsBGlu35 ,Os11bglu37, OsBGlu37 ,Os3bglu8, Os3BGlu8 ,Os4bglu9, Os4BGlu9,Os1bglu1, Os1Bglu1,Os4bglu17, Os4Bglu17,Os5bglu19, Os5Bglu19,Os1bglu2, Os1Bglu2,Os5bglu20, Os5Bglu20,Os5bglu21, Os5Bglu21,Os5bglu22, Os5Bglu22,Os5bglu23, Os5Bglu23,Os1bglu3, Os1Bglu3,Os6bglu25, Os6Bglu25,Os9bglu32, Os9Bglu32,Os10bglu34, Os10Bglu34,Os12bglu38, Os12Bglu38,Os12bglu39, Os12Bglu39,Os12bglu40, Os12Bglu40,Os4bglu16, Os4Bglu16, Os4BGlu16,Os4bglu14, Os4Bglu14, Os4BGlu14,Os11bglu36, Os11Bglu36, SFR2, sfr2,Os9bglu31, Os9BGlu31 ,Os4bglu18, Os4Bglu18, Os4BGlu18,Os1bglu4, Os1Bglu4, Os1BGlu4,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13,Os1bglu5, Os1Bglu5, 1bglu5,Os9bglu33, Os9Bglu33, 9bglu33,Os3bglu6, Os3BGlu6, 3BGlu6,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os4bglu15, Os4Bglu15
37290	3286638	K Abe, Y Emori, H Kondo, S Arai, K Suzuki	The NH2-terminal 21 amino acid residues are not essential for the papain-inhibitory activity of Oryzacystatin, a member of the cystatin superfamily. Expression of Oryzacystatin cDNA and its truncated fragments in Escherichia coli.	J. Biol. Chem.	263(16)	7655-9	1988	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
37291	15073216	Liang-Ran Zhang, Jia-Yi Tao, Wang T.	Molecular characterization of OsRad21-1, a rice homologue of yeast RAD21 essential for mitotic chromosome cohesion.	J. Exp. Bot.	55(399)	1149-52	2004	RAD21-3,RAD21-4,RAD21,RAD21-2	OsRad21-3,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsRad21, OsRAD21-1,OsRad21-2
37292	21119003	Wang K., Wang M., Tang D., Shen Y., Qin B., Li M., Cheng Z.	PAIR3, an axis-associated protein, is essential for the recruitment of recombination elements onto meiotic chromosomes in rice.	Mol. Biol. Cell	22(1)	12-9	2011	PAIR2,PAIR3,RAD21-4,ZEP1	Pair2, OsPAIR2, OsASY1,,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsZEP1
37293	19001369	Kosugi S., Hasebe M., Matsumura N., Takashima H., Etsuko Miyamoto-Sato, Tomita M., Yanagawa H.	Six classes of nuclear localization signals specific to different binding grooves of importin alpha.	J. Biol. Chem.	284(1)	478-85	2009	IMPA1A	rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a
37294	18182025	Lee S., Sang Chul Choi, An G.	Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.	Plant J.	54(1)	93-105	2008	MADS47,MADS55,MADS22	OsMADS47, OsMDP1, MDP, MDP1,OsMADS55,OsMADS22, RMD1
37296	0	Ma,B. and Chen,X.	SPL5, a cell death and defense-related gene, encodes a putative splicing factor 3b subunit 3 (SF3b3) in rice	Mol. Breed.	30(2)	939-949	2012	SPL5	spl5(bl6,spl5-1), bl6, spl5, SF3b3
37297	0	Mukherjee,R., Gayen,S., Chakraborty,A., Bhattacharyya,J., Maiti,M.K., Basu,A. and Sen,S.K.	Double-Stranded RNA-Mediated Downregulation of pdhk Gene Expression to Shorten Maturation Time of a Late Maturing Native indica Rice Cultivar, Badshahbhog	Crop Sci.	52(4)	1743-1753	2012	_,_	Ospdhk1,OS-PYDK, Ospdhk, PDHK, Ospdhk2, pdhk2 OsHRK1, HRK1
37298	23430049	Sun,J., Xu,X., Xue,Z., Snyder,J.H. and Qi,X.	Functional analysis of a rice oxidosqualene cyclase through total gene synthesis	Mol Plant	6(5)	1726-9	2013	_	OsOSC6
37299	0	Wilkinson,M.D., Castells-Brooke,N. and Shewry,P.R.	Diversity of sequences encoded by the Gsp-1 genes in wheat and other grass species	J. Cereal Sci.	57(1)	1-9	2013	_	Gsp-1, GSP-1
37300	16126864	Liu B., Li P., Li X., Liu C., Cao S., Chu C., Cao X.	Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice.	Plant Physiol.	139(1)	296-305	2005	MIR529A,MIR530,_,MIR528,DCL1	miR529a, Osa-miR529a, OsmiR529a,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,miR529b, Osa-miR529b, OsmiR529b,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,Dcl1, OsDCL1, osDCL1, Os-DCL1
37301	17640358	Arora R., Agarwal P., Ray S., Ashok Kumar Singh, Vijay Pal Singh, Akhilesh K Tyagi, Kapoor S.	MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress.	BMC Genomics	8	242	2007	MADS18,MADS30,MADS32,MADS37,MADS55,LHS1,MADS47,MADS87,RAP1B,MADS69,MADS67,MADS24,MADS75,MADS57,MADS77,MADS79,MADS80,MADS76,MADS74,MADS27,MADS23,SPW1,MADS81,MADS82,MADS83,MADS84,MADS17,MADS56,MADS50,MADS22,MADS85,PAP2,MADS78,MADS86,MADS88,MADS89,MADS90,MADS91,MADS92,MADS59,MADS60,MADS5,MADS64,MADS13,RAG,MADS93,MADS94,MADS95,MADS51,MADS96,MADS97,MADS98,MADS70,MADS71,MADS73,MADS31,MADS7,MADS62,MADS25,MADS26,FST ,MADS63,MADS20,MADS99,MADS66,MADS2,MADS21,MADS4,MADS72,MADS61,RAP1A,MADS58,MFO1,MADS68,MADS33	OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsMADS30,OsMADS32, CFO1, CFO1/OsMADS32, TRI1, OsMADS32/CFO, CFO,OsMADS37,OsMADS55,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsMADS47, OsMDP1, MDP, MDP1,OsMADS87,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS69,OsMADS67,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS75,OsMADS57, MADS-57,OsMADS77,OsMADS79,OsMADS80,OsMADS76,OsMADS74,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS23, MADS-23,SPW1, spw1, MADS16, OsMADS16,OsMADS81,OsMADS82,OsMADS83,OsMADS84,OsMADS17, NMADS3, RMADS213, nmads3,OsMADS56, FDRMADS8, RMADS214,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,OsMADS22, RMD1,OsMADS85,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OsMADS78,OsMADS86,OsMADS88,OsMADS89,OsMADS90,OsMADS91,OsMADS92,OsMADS59,OsMADS60,OsMADS5, FDRMADS2,OsMADS64,OsMADS13, MAF1, RMADS206,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsMADS93,OsMADS94,OsMADS95,OsMADS51, OsMADS65, MADS65,OsMADS96,OsMADS97,OsMADS98,OsMADS70,OsMADS71,OsMADS73,OsMADS31,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS62,OsMADS25,OsMADS26, FDRMADS3, RMADS220,OsMADS29, MADS29, OsFST,OsMADS63,OsMADS20,OsMADS99,OsMADS66,OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMADS21, RMADS207,OsMADS4, PI1,OsMADS72,OsMADS61, MADS-27b,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS58,OsMADS6, MADS6, OsMFO1,OsMADS68,OsMADS33
37302	12645264	Qun-Yu Zhang, Yao-Guang Liu, Gui-Quan Zhang, Man-Tong Mei	[Molecular mapping of the fertility restorer gene Rf-4 for WA cytoplasmic male sterility in rice].	Yi Chuan Xue Bao	29(11)	1001-4	2002	_,RF3	Rf4, Rf-4, PPR782a, PPR9, PPR3,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3
37303	19522564	Chang-Jie Jiang, Shimono M., Maeda S., Inoue H., Mori M., Hasegawa M., Sugano S., Takatsuji H.	Suppression of the rice fatty-acid desaturase gene OsSSI2 enhances resistance to blast and leaf blight diseases in rice.	Mol. Plant Microbe Interact.	22(7)	820-9	2009	_,WRKY45,PR1B	OsSSI2,OsWRKY45,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
37304	21693643	Paterson A.H., Li Z.K.	Paleo-Green Revolution for rice.	Proc. Natl. Acad. Sci. U.S.A.	108(27)	10931-2	2011	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
37305	21443631	Yonekura-Sakakibara K., Hanada K.	An evolutionary view of functional diversity in family 1 glycosyltransferases.	Plant J.	66(1)	182-93	2011		
37306	17443292	Guo J., Song J., Wang F., Xian Sheng Zhang	Genome-wide identification and expression analysis of rice cell cycle genes.	Plant Mol. Biol.	64(4)	349-60	2007	CYCD5;2,CYCD1;3,CYCA2;1,KRP7,CDKB2;1 ,CYCU4;3,_,CYCA3;1,CYCA3;3,CYCA3;4,CYCB1;3,CYCD5;4,CYCL1;1,CYCT1;2,CYCT1;3,CYCT1;4,CYCT1;5,CYCT1;6,CDKF;2,CDKF;3,CDKF;4,CDKG;2,_,_,_,_,_,_,CYCB1;2,CYCD2;2,CYCD2;3,CYCD4;2,CYCD3;1,_,_,_,_,_,CYCA1;2,CYCD1;1,CYCD1;2,CYCD5;3,CYCD6;1,_,_,_,CYCD2;1,KRP3,CDKE;1,CDKC;2,CDKD;1,CYCH;1,CYCU4;1,_,_,_,_,KRP6,CYCU4;5,CYCU4;2,CYCD5;1,CYCU4;4,CYCU3;1,_,CYCB2;2,CYCA3;2,_,CYCD7;1,CDKB;1,_,KRP2,CYCD4;1,CDKF;1,CYCT1;1,CYCA1;1,_,CYCU2;1,CYCB1;4,CDKC;1,CDKC;3,_,SDS,KRP1,KRP4,KRP5,CYCU1;1,CYCB2;1,CDC2-1,CDC2-2,CYCB1;1	CycD5;2, CycD5;os;2, Orysa;CycD5;2, Orysa;CYCD5;2,CycD1;3, CycD1;os;3, Orysa;CycD1;3, Orysa;CYCD1;3,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,Orysa;KRP7,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1,OsMSRPK1, Orysa;CDKG;1,CycA3;1, CycA3;os;1, Orysa;CycA3;1,CycA3;3, CycA3;os;3, Orysa;CycA3;3,CycA3;4, CycA3;os;4, Orysa;CycA3;4,CycB1;3, CycB1;os;3, Orysa;CycB1;3,CycD5;4, CycD5;os;4, Orysa;CycD5;4,CycL1;1, CycL1;os;1, Orysa;CycL1;1,CycT1;2, CycT1;os;2, Orysa;CycT1;2,CycT1;3, CycT1;os;3, Orysa;CycT1;3,CycT1;4, CycT1;os;4, Orysa;CycT1;4,CycT1;5, CycT1;os;5, Orysa;CycT1;5,CycT1;6, CycT1;os;6, Orysa;CycT1;6,CDKF;2, Orysa;CDKF;2,CDKF;3, Orysa;CDKF;3,CDKF;4, Orysa;CDKF;4,CDKG;2, Orysa;CDKG;2,Orysa;CKL2,Orysa;CKL5,Orysa;CKL6,Orysa;CKL7,Orysa;CKS1,Orysa;CKL9,CycB1;2, CycB1;os;2, Orysa;CycB1;2,CycD2;2, CycD2;os;2, Orysa;CycD2;2, Orysa;CYCD2;2,CycD2;3, CycD2;os;3, Orysa;CycD2;3, Orysa;CYCD2;3,CycD4;2, CycD4;os;2, Orysa;CycD4;2, Orysa;CYCD4;2,CycD3;1, CycD3;os;1, Orysa;CycD3;1, Orysa;CYCD3;1,Orysa;E2F3, OsE2F3,Orysa;E2F4, OsE2F4,Orysa;DEL1,Orysa;DEL2,Orysa;Wee2,CycA1;1, CycA1;os;1, Orysa;CycA1;2,CycD1;1, CycD1;os;1, Orysa;CycD1;1, Orysa;CYCD1;1,CycD1;2, CycD1;os;2, Orysa;CycD1;2, Orysa;CYCD1;2,CycD5;3, CYCD5-3, Orysa;CycD5;3, Orysa;CYCD5;3,CycD6;1, CycD6;os;1, Orysa;CycD6;1, Orysa;CYCD6;1,Orysa;CKL4,Orysa;CKL8, OsSTA277,Orysa;CKL1, OsSTA287,CycD2;1, CYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2,OsiICK3, Orysa;KRP3, OrysaICK3, Orysa;ICK3,CDKE;1, Orysa;CDKE;1, OsCdk8_1, Cdk8_1 ,CDKC;2, Orysa;CDKC;2, Orysa;CDKC;1, CDKC;1, OsCDKC1, OsCDKC;1,CDKD;1, Orysa;CDKD;1, R2, CAK R2, CDKD1;3 ,Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,CycU4;1, CycU4;os;1, Orysa;CycU4;1,Orysa;DP1, OsDP1, DP1,Orysa;DP3,Orysa;Rb1, RBR1, OsRBR2,Orysa;DP2, DP TF,OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6,CycU4;5, CycU4;os;5, Orysa;CycU4;5,CycU4;2, CycU4;os;2, Orysa;CycU4;2,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2,CycU4;4, CycU4;os;4, Orysa;CycU4;4, OsCYCP4;2,CycU3;1, CycU3;os;1, Orysa;CycU3;1, OsCYCP1;1,Orysa;Rb2, RBR2, OsRBR1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1,Orysa;E2F2, OsE2F2, E2F2,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3,CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1,Ores;Wee1, OsWEE1, WEE1,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,Orysa;E2F1, OsE2F1, E2F1,CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2,OsCycB1;4, Orysa;CycB1;4, CYCB1-3, OsCYCB1-3,CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2,CDKC;3, Orysa;CDKC;3,CKL10, Orysa;CKL10, OsCKL:10, CKL:10,OsSDS, Orysa;SDS,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1 ,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,CycU1;1, CycU1;os;1, Orysa;CycU1;1, OsCYCP2;1,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm
37307	18538315	Abe M., Kuroshita H., Umeda M., Jun-Ichi Itoh, Nagato Y.	The rice flattened shoot meristem, encoding CAF-1 p150 subunit, is required for meristem maintenance by regulating the cell-cycle period.	Dev. Biol.	319(2)	384-93	2008	_,OSH1	FSM, FAS1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
37308	19546891	Liu S., Wang J., Wang L., Wang X., Xue Y., WU P., Shou H.	Adventitious root formation in rice requires OsGNOM1 and is mediated by the OsPINs family.	Cell Res.	19(9)	1110-9	2009	LRA1,PIN9,PIN5B,CRL4	OsPIN2, PIN2, OsLRA1,OsPIN9,PIN5C, OsPIN5c, OsPIN5b,OsGNOM1, GNOM1, CRL4/GNOM1
37309	15258171	Emily J H Ross, Julie M Stone, Christian G Elowsky, Raul Arredondo-Peter, Robert V Klucas, Sarath G.	Activation of the Oryza sativa non-symbiotic haemoglobin-2 promoter by the cytokinin-regulated transcription factor, ARR1.	J. Exp. Bot.	55(403)	1721-31	2004	Hb4,Hb3,Hb2,Hb1	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4,HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
37310	0	LI L., PENG W.F., LIU Q.Q., ZHOU J.J., LIANG W.H., XIE X.Z.	Expression Patterns of OsPIL11, a Phytochrome-Interacting Factor in Rice, and Preliminary Analysis of Its Roles in Light Signal Transduction	Rice Science	19	263-268	2012	PIL11	OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4
37311	22924020	Farre A., Cuadrado A., Lacasa-Benito I., Cistue L., Schubert I., Comadran J., Jansen J., Romagosa I.	Genetic characterization of a reciprocal translocation present in a widely grown barley variety	Molecular Breeding	30	1109-1119	2012		
37312	0	Cook M., Thilmony R.	The OsGEX2 Gene Promoter Confers Sperm Cell Expression in Transgenic Rice	Plant Molecular Biology Reporter	30	1138-1148	2012	_,_	PS1,OsGEX2, GEX2
37313	0	Na J.K., Seo M.H., Yoon I.S., Lee Y.H., Lee K.O., Kim D.Y.	Involvement of rice Polycomb protein OsFIE2 in plant growth and seed size	Plant Biotechnol Rep	6	339-346	2012	FIE2,IEZ1	OsFIE2, FIE, OsWD40-153,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718
37314	0	Dong R.X., Chen J., Wang X.M., Li J.S., Zhou J., Yang Y., Yu C.L., Cheng Y., Yan C.Q., Chen J.P.	Agrobacterium-mediated transformation efficiency is altered in a novel rice bacterial blight resistance cultivar and is influenced by environmental temperature	Physiol. Mol. Plant Pathol.	77	33-40	2012	PR1-101,PR1-71,PR1-22,PR1-72,PR1-51,PR1A,PR1-12,PR1B,PR1-21,PR1-52,PR1-73,PR1-121,_,_	OsPR1#101, OsPR1-101, OsPR1L2, PR1L2,OsPR1#071, OsPR1-71,OsPR1#022, OsPR1-22,OsPR1#072, OsPR1-72, PR1L, OsPR1L,OsPR1#051, OsPR1-51,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPR1#012, OsPR1-12,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR1#021, OsPR1-21,OsPR1#052, OsPR1-52,OsPR1#073, OsPR1-73,OsPR1#121, OsPR1-121,OsVIP1-1,OsVIP1-2
37315	0	Jiang Y., Chen R., Dong J., Xu Z., Gao X.	Analysis of GDSL lipase (GLIP) family genes in rice (Oryza sativa)	Plant OMICS	5	351-358	2012	GELP4,GELP5,GELP6,GELP7,GELP8,GELP9,GELP10,GELP11,GELP14,GELP15,GELP16,GELP13,GELP17,GELP18,GELP19,GELP20,GELP21,GELP22,GELP23,GELP24,GELP25,GELP26,GELP27,GELP29,GELP30,GELP31,GELP32,GELP33,GELP34,GELP35,GELP36,GELP37,GELP40,GELP38,GELP39,GELP41,GELP42,GELP43,GELP44,GELP46,GELP47,GELP49,GELP50,GELP51,GELP52,GELP53,GELP54,GELP55,GELP56,GELP57,GELP58,GELP60,GELP63,GELP64,GELP65,GELP61,GELP62,GELP66,GELP68,GELP69,GELP70,GELP71,GELP72,GELP73,GELP74,GELP75,GELP77,GELP76,GELP80,GELP81,GELP82,GELP83,GELP84,GELP85,GELP86,GELP87,GELP88,GELP89,GELP90,GELP93,GELP95,GELP96,GELP97,GELP98,GELP100,GELP102,GELP105,GELP108,GELP107,GELP110,GELP113,GELP1,GELP12,GELP48,GELP92,GELP103,GELP104,GELP59,GELP112,GELP99,GELP78,GELP114,GELP111,GELP109,GELP67,GELP79,GELP91,GELP94,GELP106,GELP101,GELP2,GELP3	OsGELP4,OsGELP5, OsGELP5a, OsGELP5b,OsGELP6,OsGELP7,OsGELP8,OsGELP9,OsGELP10,OsGELP11,OsGELP14,OsGELP15, OsGELP15a, OsGELP15b, OsGELP15c,OsGELP16, OsGELP16a, OsGELP16b,OsGELP13,OsGELP17,OsGELP18, OsGELP18a, OsGELP18b,OsGELP19,OsGELP20, OsGELP20a, OsGELP20b, OsGELP20c,OsGELP21, OsGELP21a, OsGELP21b, OsGELP21c,OsGELP22,OsGELP23,OsGELP24,OsGELP25,OsGELP26,OsGELP27,OsGELP29,OsGELP30,OsGELP31,OsGELP32,OsGELP33, OsGELP33a, OsGELP33b, OsGELP33c,OsGELP34,OsGELP35,OsGELP36,OsGELP37,OsGELP40,OsGELP38,OsGELP39,OsGELP41,OsGELP42,OsGELP43,OsGELP44, OsGELP44a, OsGELP44b,OsGELP46, OsGELP46a, OsGELP46b,OsGELP47,OsGELP49,OsGELP50, OsGELP50a, OsGELP50b,OsGELP51,OsGELP52,OsGELP53,OsGELP54,OsGELP55, OsGELP55a, OsGELP55b,OsGELP56,OsGELP57,OsGELP58, OsGELP58a, OsGELP58b, OsGELP58c, OsGELP58d,OsGELP60,OsGELP63,OsGELP64, OsGELP64a, OsGELP64b,OsGELP65,OsGELP61,OsGELP62, OsGELP62a, OsGELP62b, OsGELP62c,OsGELP66,OsGELP68,OsGELP69,OsGELP70,OsGELP71,OsGELP72,OsGELP73,OsGELP74,OsGELP75, OsGELP75a, OsGELP75b, OsGELP75c,OsGELP77, OsGELP77a, OsGELP77b,OsGELP76,OsGELP80,OsGELP81,OsGELP82,OsGELP83, OsGELP83a, OsGELP83b,OsGELP84,OsGELP85,OsGELP86,OsGELP87,OsGELP88,OsGELP89,OsGELP90,OsGELP93,OsGELP95,OsGELP96, OsGELP96a, OsGELP96b,OsGELP97, OsGELP97a, OsGELP97b,OsGELP98, OsGELP98a, OsGELP98b,OsGELP100, OsGELP100a, OsGELP100b,OsGELP102,OsGELP105,OsGELP108,OsGELP107,OsGELP110,OsGELP113,OsGELP1, OsEST1,OsGELP12, OsGELP12a, OsGELP12b, OsGELP12c,OsGELP48,OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE,OsGELP103,OsGELP104,OsGELP59, RMP7,OsGELP112, WDL1,OsGELP99,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,OsGELP114, OsGELP114a, OsGELP114b,OsGELP111,OsGELP109,OsGELP67, OsGELP67a, OsGELP67b,OsGELP79,OsGELP91,OsGELP94, OsGELP94a, OsGELP94b,OsGELP106,OsGELP101,OsGELP2, OsGELP2a, OsGELP2b,OsGELP3, OsGELP3a, OsGELP3b
37316	0	Zhang H., Wu K., Wang Y., Peng Y., Hu F., Wen L., Han B., Qian Q., Teng S.	A WUSCHEL-like homeobox gene, OsWOX3B responses to NUDA/GL-1 locus in rice	Rice (N Y)	5	30	2012	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3
37317	0	Liu T., Zeng J., Xia K., Fan T., Li Y., Wang Y., Xu X., Zhang M.	Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice	Rice (N Y)	5	12	2012	_,_,_,_,_,YSL10,_,_,YSL12,_,YSL13,YSL16,YSL9,YSL2,YSL15	OsOPT8,OsOPT6,OsOPT2,OsOPT4,OsOPT5,OsYSL10,OsOPT9,OsOPT3, OsGT1,OsYSL12, OsYs11 ,OPT, OsOPT7, OPT7,OsYSL13, OsYs12 ,OsYSL16, Os-YSL16, OsYs14 ,OsYSL9, OsYs13 ,OsYSL2, Os-YSL2, OsYs6 ,OsYSL15, OsYs7
37318	24280008	Wamaitha M.J., Yamamoto R., Wong H.L., Kawasaki T., Kawano Y., Shimamoto K.	OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with receptor for activated Kinase-C 1 (RACK1)	Rice (N Y)	5	35	2012	MSRMK2,MAPK6,ERF101,RACK1,PR10A,RAC1,PAL1	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
37319	0	Zhang Y., Yang J., Shan Z., Chen S., Qiao W., Zhu X., Xie Q., Zhu H., Zhang Z., Zeng R., Ding X., Zhang G.	Substitution mapping of QTLs for blast resistance with SSSLs in rice (Oryza sativa L.)	Euphytica	184	141-150	2012		
37320	0	Ghaley B.B., Christiansen J.L., Andersen S.B.	Genetic diversity in blast resistance of Bhutan rice landraces	Euphytica	184	119-130	2012		
37321	22950899	Lu F.H., Park Y.J.	Sequence variations in OsAGPase significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)	Genet Res (Camb)	94	179-189	2012	ALK,PUL,AGPL3,AGPL1,AGPS1,AGPL4,WX1,_,AGPS2,AGPL2	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsPUL, SDBE, OsPUL3, RE,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL4, APL4, OsAPL4, OsSTA193,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIaChr7,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
37322	0	Yang L., Li R.B., Li Y.R., Huang F.K., Chen Y.Z., Huang S.S., Huang L.F., Liu C., Ma Z.F., Huang D.H., Jiang J.J.	Genetic mapping of bph20(t) and bph21(t) loci conferring brown planthopper resistance to Nilaparvata lugens Stal in rice (Oryza sativa L.)	Euphytica	183	161-171	2012	_,_	Bph20(t), BPH20,Bph21(t), BPH21
37323	0	Sama V.S.A.K., Himabindu K., Naik S.B., Sundaram R.M., Viraktamath B.C., Bentur J.S.	Mapping and marker-assisted breeding of a gene allelic to the major Asian rice gall midge resistance gene Gm8	Euphytica	187	393-400	2012	GM9,GM8,XA21,GM1,GM3,GM4,GM5,GM6,GM7,GM10,GM11,GM2	Gm9, Gm9(t),Gm8(t), Gm8,Xa21*, Xa21, OsXA21,Gm1, Gm-1, GM-1,gm3*, gm3,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5,Gm6(t), Gm6,Gm7*, Gm7,Gm10, Gm10(t),Gm11t, Gm11(t), Gm11,Gm2, Gm-2, GM-2
37324	0	Li R.J., Lu W.J., Guo C.J., Li X.J., Gu J.T., Xiao K.	Molecular Characterization and Functional Analysis of OsPHY1, a Purple Acid Phosphatase (PAP)-Type Phytase Gene in Rice(Oryza sativaL.)	Journal of Integrative Agriculture	11	1217-1226	2012	PAP15	OsPAP15, OsPAPhy_b, PAPhy_b, OsPHY1
37325	0	Gao Y., Yang S., Yuan L., Cui Y., Wu K.	Comparative analysis of SWIRM domain-containing proteins in plants	Comp. Funct. Genomics	2012	-	2012	_,_,_,_,_,_,_,_,_,_,_	OsSWI3C, OsCHB705, CHB705,OsCHB702, CHB702,OsCHB703, CHB703,OsCHB704, CHB704,OsCHB706, CHB706,OsHXA701, HXA701, ADA2 ,OsCHB701, CHB701,OsHDMA702, HDMA702, OsPAO8, PAO8,OsHDMA701, HDMA701, OsPAO9, PAO9,OsHDMA703, HDMA703, OsPAO10, PAO10,OsHDMA704, HDMA704, OsPAO11, PAO11
37326	0	Kato T., Horibata A.	A novel frameshift mutant allele, FZP-10, affecting the panicle architecture of rice	Euphytica	184	65-72	2012	FZP	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1
37327	23412633	Wang Y.P., Bounphanousay C., Kanyavong K., Nakamura I., Sato Y.I., Sato T., Zhang H.S., Tang L.H., Ishikawa R.	Population structural analysis of an in-situ conservation site for wild rice in Laos	Genes and Genetic Systems	87(5)	311-322	2012		
37328	0	Liang Y., Zhan X., Gao Z., Lin Z., Yang Z., Zhang Y., Shen X., Cao L., Cheng S.	Mapping of QTLs associated with important agronomic traits using three populations derived from a super hybrid rice Xieyou9308	Euphytica	184	1-13	2012		
37329	0	Ujiie K., Kashiwagi T., Ishimaru K.	Identification and functional analysis of alleles for productivity in two sets of chromosome segment substitution lines of rice	Euphytica	187	325-337	2012		
37331	22417073	Zhu X., Chen C., Wang B.	Phylogenetics and evolution of Trx SET genes in fully sequenced land plants	Genome	55	269-280	2012		
37332	0	Huang B., Xu J.Y., Hou M.S., Ali J., Mou T.M.	Introgression of bacterial blight resistance genes Xa7, Xa21, Xa22 and Xa23 into hybrid rice restorer lines by molecular marker-assisted selection	Euphytica	187	449-459	2012	XA21,XA7,XA23,XA22	Xa21*, Xa21, OsXA21,Xa7,Xa23(t)*, Xa23(t), Xa23, Xa23-Ni ,Xa22, Xa22*, RXa20, Xa(t), Xa22(t)
37333	0	Lu F.H., Park Y.J.	An SNP downstream of the OsBEIIb gene is significantly associated with amylose content and viscosity properties in rice (Oryza sativa L.)	J. Cereal Sci.	56	706-712	2012	ISA3,SSIIB,SBE4,WX1,FLO5,ISA1,SBE3,SBE1	OsISA3,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1
37334	0	dos Reis Goulart I.C.G., Pacheco M.T., Nunes A.L., Merotto Jr.	Identification of origin and analysis of population structure of field-selected imidazolinone-herbicide resistant red rice (Oryza sativa)	Euphytica	187	437-447	2012	ALS	OsALS, AHAS
37335	0	Shen B., Yu W.D., Zhu Y.J., Fan Y.Y., Zhuang J.Y.	Fine mapping of a major quantitative trait locus, qFLL6.2, controlling flag leaf length and yield traits in rice (Oryza sativa L.)	Euphytica	184	57-64	2012		
37336	0	Suh J.P., Lee C.K., Lee J.H., Kim J.J., Kim S.M., Cho Y.C., Park S.H., Shin J.C., Kim Y.G., Jena K.K.	Identification of quantitative trait loci for seedling cold tolerance using RILs derived from a cross between japonica and tropical japonica rice cultivars	Euphytica	184	101-108	2012		
37337	0	Hamada S., Hasegawa Y., Suzuki Y.	Identification of a GDSL-motif carboxylester hydrolase from rice bran (Oryza sativa L.)	J. Cereal Sci.	55	100-105	2012	GELP1	OsGELP1, OsEST1
37338	0	Willocquet L., Noel M., Sackville Hamilton R., Savary S.	Susceptibility of rice to sheath blight: An assessment of the diversity of rice germplasm according to genetic groups and morphological traits	Euphytica	183	227-241	2012		
37339	0	Yang S.H., Niu X.L., Luo D., Chen C.D., Yu X., Tang W., Lu B.R., Liu Y.S.	Functional Characterization of an aldehyde dehydrogenase Homologue in Rice	Journal of Integrative Agriculture	11	1434-1444	2012	ALDH22A1	OsALDH22, ALDH22, OsALDH22A1, 
37340	0	Balaji Suresh P., Srikanth B., Hemanth Kishore V., Subhakara Rao I., Vemireddy L.R., Dharika N., Sundaram R.M., Ramesha M.S., Sambasiva Rao K.R.S., Viraktamath B.C., Neeraja C.N.	Fine mapping of Rf3 and Rf4 fertility restorer loci of WA-CMS of rice (Oryza sativa L.) and validation of the developed marker system for identification of restorer lines	Euphytica	187	421-435	2012	_,_,_,_,RF3,_	PPR683, PPR5, PPR5-683,SF21,,PPR762,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4, Rf-4, PPR782a, PPR9, PPR3
37341	0	Chen M., Zhao Z., Jiang L., Wan J.	A new gene controlling hybrid sterility in rice (Oryza sativa L.)	Euphytica	184	15-22	2012	S35	S35(t)
37342	0	Yang L., Li R.B., Li Y.R., Huang F.K., Chen Y.Z., Huang S.S., Huang L.F., Liu C., Ma Z.F., Huang D.H., Jiang J.J.	Genetic mapping of bph20(t) and bph21(t) loci conferring brown planthopper resistance to Nilaparvata lugens St?l in rice (Oryza sativa L.)	Euphytica	183	161-171	2012		
37343	0	Ding W.N., Huang W., Ning Y.Q., Zhu S.H.	Genetic Analysis and Mapping of a Novel Short Root Hair Gene OsSRH3 in Rice	Acta Agronomica Sinica	38	240-244	2012	_	OsSRH3
37344	0	Li S.M., Li B.Z., Shi W.M.	Expression Patterns of Nine Ammonium Transporters in Rice in Response to N Status	Pedosphere	22	860-869	2012	AMT2;2,AMT2;1,AMT3;1,AMT3;2,AMT3;3,AMT1;2,AMT1;3,AMT1;1,AMT2;3	OsAMT2;2, AMT2;2, OsAMT2.2,OsAMT2;1, AMT2-1, OsAMT2.1,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT2;3, AMT2;3, OsAMT2.3
37345	0	Yang X.G., Liang W.H., Li F., Ma W.S.	OsGSK3 is a novel GSK3/shaggy-like gene from oryza sativa L., involved in abiotic stress signaling	Pak J Bot	44	1491-1496	2012	_	OsGSK3
37346	0	Zhang Q., Li Z., Yang J., Li S., Yang D., Zhu Y.	A Calmodulin-binding protein from Rice is Essential to pollen Development	Journal of Plant Biology	55	8-14	2012	_	OsPCBP
37347	0	Eslampanah H., Shahpiri A.	Molecular cloning and characterization of two isoforms of cytoplasmic/mitochondrial type NADPH-dependent thioredoxin reductase from rice (Oryza sativa L. ssp. indica)	Aust J Crop Sci	6	1045-1050	2012	NTRA,NTRB,NTRC	OsNTRA, NtrA,OsNTRB, NtrB,OsNTRC, NtrC, OsGRL15
37348	21959909	Shahinnia F., Druka A., Franckowiak J., Morgante M., Waugh R., Stein N.	High resolution mapping of dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H	Theoretical and Applied Genetics	124	373-384	2012	WFP,DEP3,DEP1	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,dep3, OspPLAIIIdelta, pPLAIIIdelta,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
37349	22083356	Septiningsih E.M., Sanchez D.L., Singh N., Sendon P.M.D., Pamplona A.M., Heuer S., Mackill D.J.	Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru	Theoretical and Applied Genetics	124	867-874	2012	SUB1A	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
37350	24279948	Huang Y.C., Huang W.L., Hong C.Y., Lur H.S., Chang M.C.	Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance	Rice (N Y)	5	33	2012	ADF1,ADF3,ADF2,ADF4,ADF5,ADF6,ADF7,ADF8,ADF9,ADF10,ADF11	OsADF1,OsADF3,OsADF,OsADF4, OsADF,OsADF5,OsADF6,OsADF7,OsADF8, OsADF8a, OsADF8b,OsADF9,OsADF10,OsADF11
37351	21938473	Venuprasad R., Bool M.E., Quiatchon L., Atlin G.N.	A QTL for rice grain yield in aerobic environments with large effects in three genetic backgrounds	Theoretical and Applied Genetics	124	323-332	2012		
37352	0	Andrieu A., Breitler J.C., Sire C., Meynard D., Gantet P., Guiderdoni E.	An in planta, Agrobacterium-mediated transient gene expression method for inducing gene silencing in rice (Oryza sativa L.) leaves	Rice (N Y)	5	23	2012	PDA,SLR1	PDS1, PDS, OsPDS, Pds,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
37353	0	Gomaa A.M., Raldugina G.N., Burmistrova N.A., Radionov N.V., Kuznetsov V.V.	Response of transgenic rape plants bearing the Osmyb4 gene from rice encoding a trans-factor to low above-zero temperature	Russian Journal of Plant Physiology	59	105-114	2012	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8
37354	0	Choi M.S., Koh E.B., Woo M.O., Piao R., Oh C.S., Koh H.J.	Tiller formation in rice is altered by overexpression of OsIAGLU gene encoding an IAA-conjugating enzyme or exogenous treatment of free IAA	Journal of Plant Biology	55	429-435	2012	_	OsIAGLU
37355	0	Su'udi M., Cha J.Y., Ahn I.P., Kwak Y.S., Woo Y.M., Son D.	Functional characterization of a B-type cell cycle switch 52 in rice (OsCCS52B)	Plant Cell Tissue Organ Cult.	111	101-111	2012	_	OsWD40-33, OsCCS52B
37356	0	Pandey D.M., Kim S.R.	Identification and expression analysis of hypoxia stress inducible CCCH-type zinc finger protein genes in rice	Journal of Plant Biology	55	489-497	2012	C3H37,C3H33,C3H67,C3H47,_,_,_,_,_,C3H29,C3H35,_,_,_,_,C3H24,_,TPP1,C3H50,C3H10,_,MADS23,DOS,STR6,PRR95	OsC3H37, OsTZF7, OsCCCH-Zn-1,OsC3H33, OsTZF5, OsCCCH-Zn-5,OsC3H67, OsTZF4, OsCCCH-Zn-7,OsC3H47, OsCCCH-Zn-10,OsLASPO,OsGH,OsAT-IV,OsRNAG,OsCYP450,OsC3H29, OsCCCH-Zn-9,OsC3H35, OsTZF1, OsCCCH-Zn-3,OsLRR,OsPRAGL,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62,OsMYB-1, MYB-1, MYB1, OsARM1, ARM1,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,OsPPi-PFK, OsPFK04, PFK04, PFK4,OsTPP1, OsTPS,OsC3H50, OsTZF6, OsCCCH-Zn-6,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12,OsMYB55, OsMYB-2,OsMADS23, MADS-23,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33
37357	0	Kim S.H., Choi H.S., Cho Y.C., Kim S.R.	Cold-Responsive Regulation of a Flower-Preferential class III peroxidase Gene, OsPOX1, in Rice (Oryza sativa L.)	Journal of Plant Biology	55	123-131	2012	ATP6	atp6, OsPOX1, prx3, POX1
37358	15111724	Miki D., Shimamoto K.	Simple RNAi vectors for stable and transient suppression of gene function in rice.	Plant Cell Physiol.	45(4)	490-5	2004	RAC3,RAC6,RAC2,RAC4,RAC7,PDA,RAC5,RAC1	OsRac3,OsRacB, RacB, OsRac6,OsRAC2, OsRac2,OsRAC4, OsRac4, ROP4, OsRop4,OSRAC7, OsRac7, ROP5, OsRop5,PDS1, PDS, OsPDS, Pds,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
37359	12566582	Olga N Danilevskaya, Hermon P., Hantke S., Michael G Muszynski, Kollipara K., Evgueni V Ananiev	Duplicated fie genes in maize: expression pattern and imprinting suggest distinct functions.	Plant Cell	15(2)	425-38	2003	FIE2	OsFIE2, FIE, OsWD40-153
37360	0	Lin X.H., Zhang D.P., Xie Y.F., Gao H.P., Zhang Q	Identifying and mapping a new gene for bacterial blight resistance in rice based on RFLP markers.	Phytopathology	86(11)	1156-1159	1996	XA22	Xa22, Xa22*, RXa20, Xa(t), Xa22(t)
37361	0	Zhang Q, Wang C.L., Zhao K.J., Yang W.C., Qiao F, Zhou Y.L., Jiang Q.X., Liu G.C.	Development of near-isogenic line CBB23 with a new resistance gene to bacterial blight in rice and its application.	Chin. J. Rice Sci.	16	206-210	2002	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
37362	0	Zhang Q.S., Zhang J.J., Yang D.C., Li Y.S., Li S.Q., Zhu Y.G.	Characterisation and immunolocalisation of a pollen-specific calmodulin-binding protein from rice.	Function Plant Biol.	33	555-562	2006	_	OsPCBP
37363	17617177	Tao J., Zhang L., Chong K., Wang T.	OsRad21-3, an orthologue of yeast RAD21, is required for pollen development in Oryza sativa.	Plant J.	51(5)	919-30	2007	RAD21-3	OsRad21-3
37364	15599592	Fuchs I., Sonja St?lzle, Ivashikina N., Hedrich R.	Rice K+ uptake channel OsAKT1 is sensitive to salt stress.	Planta	221(2)	212-21	2005	_	OsAKT1, Os-AKT1, AKT1
37365	21626211	Hanada K., Hase T., Toyoda T., Shinozaki K., Okamoto M.	Origin and evolution of genes related to ABA metabolism and its signaling pathways.	J. Plant Res.	124(4)	455-65	2011		
37366	21620514	Kato-Noguchi H.	Convergent or parallel molecular evolution of momilactone A and B: potent allelochemicals, momilactones have been found only in rice and the moss Hypnum plumaeforme.	J. Plant Physiol.	168(13)	1511-6	2011	CPS4,KS4	OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16
37367	21277362	Yang C.C., Sakai H., Numa H., Itoh T.	Gene tree discordance of wild and cultivated Asian rice deciphered by genome-wide sequence comparison.	Gene	477(1-2)	53-60	2011		
37368	21622811	Shingaki-Wells RN., Huang S., Taylor N.L., Carroll A.J., Zhou W., Millar A.H.	Differential molecular responses of rice and wheat coleoptiles to anoxia reveal novel metabolic adaptations in amino acid metabolism for tissue tolerance.	Plant Physiol.	156(4)	1706-24	2011		
37369	21300183	Hwang H., Cho M.H., Hahn B.S., Lim H., Kwon Y.K., Hahn T.R., Bhoo S.H.	Proteomic identification of rhythmic proteins in rice seedlings.	Biochim. Biophys. Acta	1814(4)	470-9	2011		
37370	21442326	Tamura M., Tachida H.	Evolution of the number of LRRs in plant disease resistance genes.	Mol. Genet. Genomics	285(5)	393-402	2011		
37371	21573763	Yang R., Li J., Wang X., Zhou X.	Bayesian functional mapping of dynamic quantitative traits.	Theor. Appl. Genet.	123(3)	483-92	2011		
37373	21713535	Hojsgaard D.H., Mart?nez EJ., Acu?a CA., Quarin C.L., Pupilli F.	A molecular map of the apomixis-control locus in Paspalum procurrens and its comparative analysis with other species of Paspalum.	Theor. Appl. Genet.	123(6)	959-71	2011		
37374	21713536	Ahmadi N., Negr?o S., Katsantonis D., Frouin J., Ploux J., Letourmy P., Droc G., Babo P., Trindade H., Bruschi G., Greco R., Oliveira M.M., Piffanelli P., Courtois B.	Targeted association analysis identified japonica rice varieties achieving Na(+)/K (+) homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra.	Theor. Appl. Genet.	123(6)	881-95	2011	NHX5,_,CBL4,CIPK24,_,_,HKT8,LCS,HKT1,DREB1A	OsNHX5,OsCLP3, OsClp3, CLP3,OsCBL4, SOS3, OsSOS3,OsCIPK24, SOS2, OsSOS2,OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsHAK1, HAK1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
37375	21437642	Cserh?ti M., Tur?czy Z., Zombori Z., Cserzo M., Dudits D., Pongor S., Gy?rgyey J.	Prediction of new abiotic stress genes in Arabidopsis thaliana and Oryza sativa according to enumeration-based statistical analysis.	Mol. Genet. Genomics	285(5)	375-91	2011		
37376	21377754	Ru?z-S?nchez M., Armada E., Mu?oz Y., Garc?a de Salamone IE., Aroca R., Ru?z-Lozano JM., Azc?n R.	Azospirillum and arbuscular mycorrhizal colonization enhance rice growth and physiological traits under well-watered and drought conditions.	J. Plant Physiol.	168(10)	1031-7	2011		
37377	21400017	Xiong J., Zhang L., Fu G., Yang Y., Zhu C., Tao L.	Drought-induced proline accumulation is uninvolved with increased nitric oxide, which alleviates drought stress by decreasing transpiration in rice.	J. Plant Res.	125(1)	55-64	2012		
37378	21601944	Kano A., Hosotani K., Gomi K., Yamasaki-Kokudo Y., Shirakawa C., Fukumoto T., Ohtani K., Tajima S., Izumori K., Tanaka K., Ishida Y., Nishizawa Y., Ichimura K., Tada Y., Akimitsu K.	D-Psicose induces upregulation of defense-related genes and resistance in rice against bacterial blight.	J. Plant Physiol.	168(15)	1852-7	2011	RBBI2-3,_,POX,_,_,LOX-L2,GSTU24,POX22.3,_,WRKY62	RBBI2-3,TLP, PR5,Pox, prx135,Oschib1, PR-8, PR8, OsPR8,OsPR2, PR2, OsGlu1, Glu1,OsLOX-L2, LOX1.1, LOX L-2, LOX-2,OsGSTU24,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPR2, PR2, Gns4, OsGLN2,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10
37379	22158467	Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.	Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.	Plant Cell	23(12)	4185-207	2011	MIR159A,MIR1861I,MIR1861J,MIR1872,MIR1428C,MIR1863,MIR160C,MIR160D,miR159E,miR159D,miR159F,miR159B,MIR164D,MIR164C,MIR164F,MIR160E,MIR160F,miR535,MIR169O,MIR169L,MIR395D,MIR395E,MIR395F,MIR395G,MIR395L,MIR395M,MIR395N,MIR395P,MIR395Q,MIR395R,MIR395S,MIR395T,MIR395U,MIR395V,MIR395W,MIR414,MIR413,MIR415,MIR416,MIR417,MIR418,MIR419,MIR420,MIR426,MIR435,MIR437,MIR438,MIR439A,MIR439B,MIR439C,MIR439D,MIR439E,MIR439F,MIR439G,MIR439H,MIR439J,MIR441A,MIR441B,MIR441C,MIR442,MIR444E,MIR445A,MIR445B,MIR445C,MIR445D,MIR445E,MIR399G,MIR399H,MIR1430,MIR171H,MIR1433,MIR395H,MIR160B,MIR160A,MIR399E,MIR171G,MIR529A,MIR169P,MIR444C,MIR444D,MIR444B,MIR169I,MIR156B,MIR166A,MIR166B,MIR444F,MIR445F,MIR445G,MIR806A,MIR807A,MIR445I,MIR446,MIR531,MIR531A2,MIR806B,MIR806C,MIR806D,MIR806E,MIR806F,MIR806G,MIR806H,MIR807B,MIR807C,MIR808,MIR809A,MIR809B,MIR809C,MIR809D,MIR809E,MIR809F,MIR809G,MIR809H,MIR810A,MIR811A,MIR811B,MIR811C,MIR812A,MIR812B,MIR812C,MIR812D,MIR812E,MIR813,MIR814A,MIR814B,MIR814C,MIR816,MIR817,MIR819A,MIR819B,MIR819C,MIR819D,MIR819E,MIR819F,MIR819G,MIR819H,MIR819I,MIR819J,MIR819K,MIR821A,MIR821B,MIR821C,MIR1317,MIR1424,MIR1426,MIR1428G,MIR1429,MIR1431,MIR1435,MIR1438,MIR1439,MIR1442,MIR1441,MIR1440,MIR1861A2,MIR169B,MIR1851,MIR164B,MIR398A,MIR815A,MIR815B,DCL1,MIR394,MIR818A,MIR818B,MIR818C,MIR818D,MIR818E,MIR1436,MIR395O,MIR530,MIR395C,MIR815C,MIR164A,MIR393B,MIR162A,MIR1320,MIR396B,MIR169K,MIR169C,MIR169D,MIR169J,MIR169M,MIR171I,MIR1846C,MIR1849,MIR395A,MIR1846B,MIR1846D,MIR1847,MIR1846A,MIR1852,MIR1853,MIR1854,MIR1855,MIR1856,MIR1857,MIR1858A,MIR1858B,MIR1859,MIR1861A,MIR1861B,MIR1861F,MIR1861L,MIR1861C,MIR1861D,MIR1861E,MIR1861K,MIR1861M,MIR1861G,MIR1861H,MIR1861N,MIR1862A,MIR1862B,MIR1862C,MIR1867,MIR1862E,MIR1864,MIR1865,MIR1866,MIR1868,MIR1869,MIR1870,MIR531B,MIR812F,MIR812H,MIR812I,MIR812J,MIR440,MIR1428B,MIR1423,MIR395B,MIR395I,MIR395J,MIR395K,MIR443,MIR1884A,MIR2090,MIR2091,MIR2092,MIR2093,MIR2094,MIR2095,MIR2096,MIR2097,MIR2098,MIR2099,MIR2100,MIR2101,MIR2102,MIR2103,MIR2104,MIR2105,MIR2106,MIR2118A,MIR2118B,MIR2118C,MIR2118D,MIR2118E,MIR2118G,MIR2118H,MIR2118I,MIR2118J,MIR2118K,MIR2118L,MIR2118M,MIR2118N,MIR2118O,MIR2118P,MIR2118Q,MIR2118R,MIR2120,MIR2121A,MIR2121B,MIR2122,MIR2123a,MIR2123b,MIR2123C,MIR2124A,MIR2124C,MIR2124D,MIR2124E,MIR2124F,MIR2124G,MIR2275A,MIR1884B,MIR2124H,MIR2124I,MIR2125,MIR2275B,MIR2124B,MIR5803,MIR5804,MIR5805,MIR5806,MIR399C,MIR399B,MIR167C,MIR169E,MIR169g,MIR5807,MIR1319B,MIR2863C,MIR5150,MIR5152,MIR5516B,MIR5789,MIR5791,MIR5793,MIR5797,MIR5798,MIR5799,MIR5800,MIR5802,MIR5809,MIR5810,MIR1427,MIR1428A,MIR2055,MIR5811,MIR5813,MIR5814,MIR5817,MIR5826,MIR5821,MIR5822,MIR5823,MIR5824,MIR172C,MIR5825,MIR5828,MIR5829,MIR5831,MIR5832,MIR5833,MIR5834,MIR2873C,MIR5143A,MIR5147,MIR5491,MIR5795,MIR5796,MIR5801,MIR5808,MIR5812,MIR5816,MIR5818,MIR5820,MIR5827,MIR5830,MIR3979,MIR5143B,MIR5159,MIR5835,MIR168B,MIR399F,MIR169N,MIR444A,MIR1319,MIR1318,MIR1437,MIR1850,MIR1848,MIR5508,MIR5513,MIR5516A,MIR5519,MIR5485,MIR2118F,MIR1862D,MIR166C,MIR166D,MIR167D,MIR167E,MIR5794,MIR1846E,MIR166I,MIR171B,MIR156L,MIR156A,MIR5836,MIR5837,MIR812S,MIR812T,MIR812Q,MIR812R,MIR818F,MIR1863C,MIR2871B,MIR5179,MIR5792,MIR5815,MIR5819,MIR812P,MIR812U,MIR812V,MIR393,MIR1860,MIR172A,MIR169H,MIR390,MIR319B,MIR820A,MIR820B,MIR820C,MIR528,MIR156K,MIR396A,MIR398B,MIR396D,MIR396F,MIR166H,miR159C,MIR5788,MIR164E,MIR166L,MIR171D,MIR171E,MIR1871,MIR1873,miR1874,MIR1875,MIR1876,MIR1877,MIR1878,MIR1880,MIR1881,MIR1882A,MIR1882B,MIR1882C,MIR1882D,MIR1882F,MIR1882G,MIR1882H,MIR1883A,MIR1883B,MIR172B,MIR156D,MIR1879,MIR166F,MIR399I,MIR1428D,MIR2275D,MIR156E,MIR171C,MIR166E,MIR156C,SDT,MIR156I,MIR167I,MIR166N,MIR1882E,MIR529B,MIR169F,MIR162B,MIR168A,MIR166M,MIR166G,MIR397B,MIR396C,miR827,MIR167H,MIR156F,MIR397A,MIR408,MIR167A,MIR167B,MIR171F,MIR399D,MIR166K,MIR399A,MIR156G,MIR172D,MIR167F,MIR167G,MIR167J,MIR319A,MIR399J,MIR1425,MIR1428E,MIR399K,MIR171,MIR169	miR159a, osa-miR159a, osa-MIR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR1861i, osa-miR1861i, osa-MIR1861i,miR1861j, osa-miR1861j, osa-MIR1861j,miR1872, osa-miR1872, osa-MIR1872,miR1428c, osa-miR1428c, osa-MIR1428c,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a,miR160c, osa-miR160c, osa-MIR160cosa-miR160c-3p osa-miR160c-5p,miR160d, osa-miR160d, osa-MIR160dosa-miR160d-3p osa-miR160d-5p,OsmiR159e, osa-MIR159e,OsmiR159d, osa-MIR159d,OsmiR159f, osa-MIR159f,OsmiR159b, osa-MIR159b,miR164d, osa-miR164d,miR164c, osa-miR164c,miR164f, osa-miR164f,miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p,miR160f, osa-miR160f, osa-MIR160fosa-miR160f-3p osa-miR160f-5p,OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p,miR169o, osa-miR169o, osa-MIR169o,miR169l, osa-miR169l, osa-MIR169l,OsmiR395d, miR395d, osa-MIR395d,OsmiR395e, miR395e, osa-MIR395e,OsmiR395f, miR395f, osa-MIR395f,OsmiR395g, miR395g, osa-MIR395g,OsmiR395l, miR395l, osa-MIR395l,OsmiR395m, miR395m, osa-MIR395m,OsmiR395n, miR395n, osa-MIR395n,OsmiR395p, miR395p, osa-MIR395p,OsmiR395q, miR395q, osa-MIR395q,OsmiR395r, miR395r, osa-MIR395r,OsmiR395s, miR395s, osa-MIR395s,OsmiR395t, miR395t, osa-MIR395t,OsmiR395u, miR395u, osa-MIR395u,OsmiR395v, miR395v, osa-MIR395v,OsmiR395w, miR395w, osa-MIR395w,miR414, osa-MIR414,miR413, osa-MIR413,miR415, osa-MIR415,miR416, osa-MIR416,miR417, osa-MIR417,miR418, osa-MIR418,miR419, osa-MIR419,miR420, osa-MIR420,miR426, osa-MIR426,miR435, osa-MIR435,miR437, osa-MIR437,miR438, osa-MIR438,miR439a, osa-MIR439a,miR439b, osa-MIR439b,miR439c, osa-MIR439c,miR439d, osa-MIR439d,miR439e, osa-MIR439e,miR439f, osa-MIR439f,miR439g, osa-MIR439g,miR439h, osa-MIR439h,miR439j, osa-MIR439j,miR441a, osa-MIR441a,miR441b, osa-MIR441b,miR441c, osa-MIR441c,miR442, osa-MIR442,miR444e, osa-MIR444e,miR445a, osa-MIR445a,miR445b, osa-MIR445b,miR445c, osa-MIR445c,miR445d, osa-MIR445d,miR445e, osa-MIR445e,OsmiR399g, osa-MIR399g,OsmiR399h, osa-MIR399h,miR1430, osa-miR1430, osa-MIR1430,miR171h, osa-miR171h,miR1433, osa-miR1433, osa-MIR1433,OsmiR395h, miR395h, osa-MIR395h, OsamiR395h ,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,OsmiR399e, osa-MIR399e,miR171g, osa-miR171g,miR529a, Osa-miR529a, OsmiR529a,miR169p, osa-miR169p,miR444c, osa-MIR444c, osa-miR444c, osa-miR444c.1, osa-miR444c.2,miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p,miR444f, osa-MIR444f,miR445f, osa-MIR445f,miR445g, osa-MIR445g,miR806a, osa-MIR806a,miR807a, osa-MIR807a,miR445i, osa-MIR445i,miR446, osa-MIR446,miR531, osa-MIR531,miR531a2, osa-MIR531a2,miR806b, osa-MIR806b,miR806c, osa-MIR806c,miR806d, osa-MIR806d,miR806e, osa-MIR806e,miR806f, osa-MIR806f,miR806g, osa-MIR806g,miR806h, osa-MIR806h,miR807b, osa-MIR807b,miR807c, osa-MIR807c,miR808, osa-MIR808,miR809a, osa-MIR809a,miR809b, osa-MIR809b,miR809c, osa-MIR809c,miR809d, osa-MIR809d,miR809e, osa-MIR809e,miR809f, osa-MIR809f,miR809g, osa-MIR809g,miR809h, osa-MIR809h,miR810a, osa-miR810a, osa-MIR810a,miR811a, osa-miR811a, osa-MIR811a,miR811b, osa-miR811b, osa-MIR811b,miR811c, osa-miR811c, osa-MIR811c,miR812a, osa-miR812a, osa-MIR812a,miR812b, osa-miR812b, osa-MIR812b,miR812c, osa-miR812c, osa-MIR812c,miR812d, osa-miR812d, osa-MIR812d,miR812e, osa-miR812e, osa-MIR812e,miR813, osa-miR813, osa-MIR813,miR814a, osa-miR814a, osa-MIR814a,miR814b, osa-miR814b, osa-MIR814b,miR814c, osa-miR814c, osa-MIR814c,miR816, osa-miR816, osa-MIR816,miR817, osa-miR817, osa-MIR817,miR819a, osa-miR819a, osa-MIR819a,miR819b, osa-miR819b, osa-MIR819b,miR819c, osa-miR819c, osa-MIR819c,miR819d, osa-miR819d, osa-MIR819d,miR819e, osa-miR819e, osa-MIR819e,miR819f, osa-miR819f, osa-MIR819f,miR819g, osa-miR819g, osa-MIR819g,miR819h, osa-miR819h, osa-MIR819h,miR819i, osa-miR819i, osa-MIR819i,miR819j, osa-miR819j, osa-MIR819j,miR819k, osa-miR819k, osa-MIR819k,miR821a, osa-miR821a, osa-MIR821a,miR821b, osa-miR821b, osa-MIR821b,miR821c, osa-miR821c, osa-MIR821c,miR1317, osa-miR1317, osa-MIR1317,miR1424, osa-miR1424, osa-MIR1424,miR1426, osa-miR1426, osa-MIR1426,miR1428g, osa-miR1428g, osa-MIR1428g,miR1429, osa-miR1429, osa-MIR1429osa-miR1429-3p osa-miR1429-5p,miR1431, osa-miR1431, osa-MIR1431,miR1435, osa-miR1435, osa-MIR1435,miR1438, osa-miR1438, osa-MIR1438,miR1439, osa-miR1439, osa-MIR1439,miR1442, osa-miR1442, osa-MIR1442,miR1441, osa-miR1441, osa-MIR1441,miR1440, osa-miR1440, osa-MIR1440,miR1861a2, osa-miR1861a2, osa-MIR1861a2,miR169b, osa-miR169b, osa-MIR169b,miR1851, osa-miR1851, osa-MIR1851,miR164b, osa-miR164b,miR398a, osa-miR398a, osa-MIR398a,miR815a, osa-miR815a, osa-MIR815a, OsmiR815a,miR815b, osa-miR815b, osa-MIR815b, OsmiR815b,Dcl1, OsDCL1, osDCL1, Os-DCL1,OsmiR394, miR394, osa-MIR394,miR818a, osa-miR818a, osa-MIR818a,miR818b, osa-miR818b, osa-MIR818b,miR818c, osa-miR818c, osa-MIR818c,miR818d, osa-miR818d, osa-MIR818d,miR818e, osa-miR818e, osa-MIR818e,miR1436, osa-miR1436, osa-MIR1436,OsmiR395o, miR395o, osa-MIR395o,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,OsmiR395c, miR395c, osa-MIR395c,miR815c, osa-miR815c, osa-MIR815c, OsmiR815c,miR164a, osa-miR164a,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,miR162a, osa-miR162a, osa-MIR162a,miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR169k, osa-miR169k, osa-MIR169k,miR169c, osa-miR169c, osa-MIR169c,miR169d, osa-miR169d, osa-MIR169d,miR169j, osa-miR169j, osa-MIR169j,miR169m, osa-miR169m, osa-MIR169m,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,miR1846c, osa-miR1846c, osa-MIR1846c,miR1849, osa-miR1849, osa-MIR1849,OsmiR395a, miR395a, osa-MIR395a,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p,miR1847, osa-miR1847, osa-MIR1847,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,miR1852, osa-miR1852, osa-MIR1852,miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p,miR1854, osa-miR1854, osa-MIR1854,miR1855, osa-miR1855, osa-MIR1855,miR1856, osa-miR1856, osa-MIR1856,miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p,miR1858a, osa-miR1858a, osa-MIR1858a,miR1858b, osa-miR1858b, osa-MIR1858b,miR1859, osa-miR1859, osa-MIR1859 ,miR1861a, osa-miR1861a, osa-MIR1861a,miR1861b, osa-miR1861b, osa-MIR1861b,miR1861f, osa-miR1861f, osa-MIR1861f,miR1861l, osa-miR1861l, osa-MIR1861l,miR1861c, osa-miR1861c, osa-MIR1861c,miR1861d, osa-miR1861d, osa-MIR1861d,miR1861e, osa-miR1861e, osa-MIR1861e,miR1861k, osa-miR1861k, osa-MIR1861k,miR1861m, osa-miR1861m, osa-MIR1861m,miR1861g, osa-miR1861g, osa-MIR1861g,miR1861h, osa-miR1861h, osa-MIR1861h,miR1861n, osa-miR1861n, osa-MIR1861n,miR1862a, osa-miR1862a, osa-MIR1862a,miR1862b, osa-miR1862b, osa-MIR1862b,miR1862c, osa-miR1862c, osa-MIR1862c,miR1867, osa-miR1867, osa-MIR1867,miR1862e, osa-miR1862e, osa-MIR1862e,miR1864, osa-miR1864, osa-MIR1864,miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p,miR1866, osa-miR1866, osa-MIR1866,miR1868, osa-miR1868, osa-MIR1868,miR1869, osa-miR1869, osa-MIR1869,miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p,miR531b, osa-MIR531b,miR812f, osa-miR812f, osa-MIR812f,miR812h, osa-miR812h, osa-MIR812h,miR812i, osa-miR812i, osa-MIR812i,miR812j, osa-miR812j, osa-MIR812j,miR440, osa-MIR440,miR1428b, osa-miR1428b, osa-MIR1428b,miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p,OsmiR395b, miR395b, osa-MIR395b,OsmiR395i, miR395i, osa-MIR395i,OsmiR395j, miR395j, osa-MIR395j,OsmiR395k, miR395k, osa-MIR395k,miR443, osa-MIR443,miR1884a, osa-miR1884a, osa-MIR1884a,miR2090, osa-miR2090, osa-MIR2090,miR2091, osa-miR2091, osa-MIR2091,miR2092, osa-miR2092, osa-MIR2092,miR2093, osa-miR2093, osa-MIR2093osa-miR2093-5p,miR2094, osa-miR2094, osa-MIR2094,miR2095, osa-miR2095, osa-MIR2095,miR2096, osa-miR2096, osa-MIR2096osa-miR2096-3p osa-miR2096-5p,miR2097, osa-miR2097, osa-MIR2097osa-miR2097-5p,miR2098, osa-miR2098, osa-MIR2098,miR2099, osa-miR2099, osa-MIR2099,miR2100, osa-miR2100, osa-MIR2100,miR2101, osa-miR2101, osa-MIR2101,miR2102, osa-miR2102, osa-MIR2102,miR2103, osa-miR2103, osa-MIR2103,miR2104, osa-miR2104, osa-MIR2104,miR2105, osa-miR2105, osa-MIR2105,miR2106, osa-miR2106, osa-MIR2106,miR2118a, osa-miR2118a, osa-MIR2118a,miR2118b, osa-miR2118b, osa-MIR2118b,miR2118c, osa-miR2118c, osa-MIR2118c,miR2118d, osa-miR2118d, osa-MIR2118d,miR2118e, osa-miR2118e, osa-MIR2118e,miR2118g, osa-miR2118g, osa-MIR2118g,miR2118h, osa-miR2118h, osa-MIR2118h,miR2118i, osa-miR2118i, osa-MIR2118i,miR2118j, osa-miR2118j, osa-MIR2118j,miR2118k, osa-miR2118k, osa-MIR2118k,miR2118l, osa-miR2118l, osa-MIR2118l,miR2118m, osa-miR2118m, osa-MIR2118m,miR2118n, osa-miR2118n, osa-MIR2118n,miR2118o, osa-miR2118o, osa-MIR2118o,miR2118p, osa-miR2118p, osa-MIR2118p,miR2118q, osa-miR2118q, osa-MIR2118q,miR2118r, osa-miR2118r, osa-MIR2118r,miR2120, osa-miR2120, osa-MIR2120,miR2121a, osa-miR2121a, osa-MIR2121a,miR2121b, osa-miR2121b, osa-MIR2121b,miR2122, osa-miR2122, osa-MIR2122,miR2123a, osa-miR213a, osa-MIR2123a,miR2123b, osa-miR213b, osa-MIR2123b,miR2123c, osa-miR213c, osa-MIR2123c,miR2124a, osa-miR214a, osa-MIR2124a,miR2124c, osa-miR214c, osa-MIR2124c,miR2124d, osa-miR214d, osa-MIR2124d,miR2124e, osa-miR214e, osa-MIR2124e,miR2124f, osa-miR214f, osa-MIR2124f,miR2124g, osa-miR214g, osa-MIR2124g,miR2275a, osa-miR2275a, osa-MIR2275a,miR1884b, osa-miR1884b, osa-MIR1884b,miR2124h, osa-miR214h, osa-MIR2124h,miR2124i, osa-miR214i, osa-MIR2124i,miR2125, osa-miR215, osa-MIR2125,miR2275b, osa-miR2275b, osa-MIR2275b,miR2124b, osa-miR214b, osa-MIR2124b,miR5803, osa-miR5803, osa-MIR5803,miR5804, osa-miR5804, osa-MIR5804,miR5805, osa-miR5805, osa-MIR5805,miR5806, osa-miR5806, osa-MIR5806,OsmiR399c, osa-MIR399c, miR399c,OsmiR399b, osa-MIR399b, miR399b,miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,miR169e, osa-miR169e, osa-MIR169e,MIR-169g, osa-MIR169g,miR5807, osa-miR5807, osa-MIR5807,miR1319b, osa-miR1319b, osa-MIR1319b,miR2863c, osa-miR2863c, osa-MIR2863c,miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p,miR5152, osa-miR5152, osa-MIR5152,miR5516b, osa-miR5516b, osa-MIR5516b,miR5789, osa-miR5789, osa-MIR5789,miR5791, osa-miR5791, osa-MIR5791,miR5793, osa-miR5793, osa-MIR5793,miR5797, osa-miR5797, osa-MIR5797,miR5798, osa-miR5798, osa-MIR5798,miR5799, osa-miR5799, osa-MIR5799,miR5800, osa-miR5800, osa-MIR5800,miR5802, osa-miR5802, osa-MIR5802,miR5809, osa-miR5809, osa-MIR5809,miR5810, osa-miR5810, osa-MIR5810,miR1427, osa-miR1427, osa-MIR1427,miR1428a, osa-miR1428a, osa-MIR1428a,miR2055, OsmiR2055, osa-miR2055, osa-MIR2055,miR5811, osa-miR5811, osa-MIR5811,miR5813, osa-miR5813, osa-MIR5813,miR5814, osa-miR5814, osa-MIR5814,miR5817, osa-miR5817, osa-MIR5817,miR5826, osa-miR5826, osa-MIR5826,miR5821, osa-miR5821, osa-MIR5821,miR5822, osa-miR5822, osa-MIR5822,miR5823, osa-miR5823, osa-MIR5823,miR5824, osa-miR5824, osa-MIR5824,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,miR5825, osa-miR5825, osa-MIR5825,miR5828, osa-miR5828, osa-MIR5828,miR5829, osa-miR5829, osa-MIR5829,miR5831, osa-miR5831, osa-MIR5831,miR5832, osa-miR5832, osa-MIR5832,miR5833, osa-miR5833, osa-MIR5833,miR5834, osa-miR5834, osa-MIR5834,miR2873c, osa-miR2873c, osa-MIR2873c,miR5143a, osa-miR5143a, osa-MIR5143a,miR5147, osa-miR5147, osa-MIR5147,miR5491, osa-miR5491, osa-MIR5491,miR5795, osa-miR5795, osa-MIR5795,miR5796, osa-miR5796, osa-MIR5796,miR5801, osa-miR5801, osa-MIR5801,miR5808, osa-miR5808, osa-MIR5808,miR5812, osa-miR5812, osa-MIR5812,miR5816, osa-miR5816, osa-MIR5816,miR5818, osa-miR5818, osa-MIR5818,miR5820, osa-miR5820, osa-MIR5820,miR5827, osa-miR5827, osa-MIR5827,miR5830, osa-miR5830, osa-MIR5830,miR3979, osa-miR3979, osa-MIR3979osa-miR3979-3p osa-miR3979-5p,miR5143b, osa-miR5143b, osa-MIR5143b,miR5159, osa-miR5159, osa-MIR5159,miR5835, osa-miR5835, osa-MIR5835,miR168b, osa-miR168b, osa-MIR168b,OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f,miR169n, osa-miR169n, osa-MIR169n,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,miR1319, osa-miR1319, osa-MIR1319, osa-MIR1319a, osa-miR1319a,miR1318, osa-miR1318, osa-MIR1318,miR1437, osa-miR1437, osa-MIR1437, osa-MIR1437a, osa-miR1437a,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.3,miR1848, osa-miR1848, osa-MIR1848,miR5508, osa-miR5508, osa-MIR5508,miR5513, osa-miR5513, osa-MIR5513,miR5516a, osa-miR5516a, osa-MIR5516a,miR5519, osa-miR5519, osa-MIR5519,miR5485, osa-miR5485, osa-MIR5485,miR2118f, osa-miR2118f, osa-MIR2118f,miR1862d, osa-miR1862d, osa-MIR1862d,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,miR5794, osa-miR5794, osa-MIR5794,miR1846e, osa-miR1846e, osa-MIR1846e,miR166i, osa-miR166iosa-miR166i-3p,miR171b, osa-miR171b,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR5836, osa-miR5836, osa-MIR5836,miR5837, osa-miR5837, osa-MIR5837, miR5837.1, miR5837.2,miR812s, osa-miR812s, osa-MIR812s,miR812t, osa-miR812t, osa-MIR812t,miR812q, osa-miR812q, osa-MIR812q,miR812r, osa-miR812r, osa-MIR812r,miR818f, osa-miR818f, osa-MIR818f,miR1863c, osa-miR1863c, osa-MIR1863c,miR2871b, osa-miR2871b, osa-MIR2871b,miR5179, osa-miR5179, osa-MIR5179,miR5792, osa-miR5792, osa-MIR5792,miR5815, osa-miR5815, osa-MIR5815,miR5819, osa-miR5819, osa-MIR5819,miR812p, osa-miR812p, osa-MIR812p,miR812u, osa-miR812u, osa-MIR812u,miR812v, osa-miR812v, osa-MIR812v,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,miR169h, osa-miR169h, osa-MIR169h,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,OsmiR319b, Osa-miR319b,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,miR398b, osa-miR398b, osa-MIR398b,miR396d, osa-miR396d, osa-MIR396d,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,OsmiR159c, osa-MIR159c,miR5788, osa-miR5788, osa-MIR5788, NolmiR-3,miR164e, osa-MIR164e,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR171e, osa-miR171eosa-miR171e-3p osa-miR171e-5p,miR1871, osa-miR1871, osa-MIR1871,miR1873, osa-miR1873, osa-MIR1873,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,miR1875, osa-miR1875, osa-MIR1875,miR1876, osa-miR1876, osa-MIR1876,miR1877, osa-miR1877, osa-MIR1877,miR1878, osa-miR1878, osa-MIR1878,miR1880, osa-miR1880, osa-MIR1880,miR1881, osa-miR1881, osa-MIR1881,miR1882a, osa-miR1882a, osa-MIR1882a,miR1882b, osa-miR1882b, osa-MIR1882b,miR1882c, osa-miR1882c, osa-MIR1882c,miR1882d, osa-miR1882d, osa-MIR1882d,miR1882f, osa-miR1882f, osa-MIR1882f,miR1882g, osa-miR1882g, osa-MIR1882g,miR1882h, osa-miR1882h, osa-MIR1882h,miR1883a, osa-miR1883a, osa-MIR1883a,miR1883b, osa-miR1883b, osa-MIR1883b,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR1879, osa-miR1879, osa-MIR1879,miR166f, osa-miR166f,OsmiR399i, osa-MIR399i, miR399i,miR1428d, osa-miR1428d, osa-MIR1428d,miR2275d, osa-miR2275d, osa-MIR2275d,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR1882e, osa-miR1882e, osa-MIR1882e,miR529b, Osa-miR529b, OsmiR529b,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR162b, osa-miR162b, osa-MIR162b ,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p,miR166m, osa-miR166m,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p,miR167b, osa-miR167b,miR171f, osa-miR171fosa-miR171f-3p osa-miR171f-5p,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,miR167f, osa-miR167f, osa-miRNA167f ,miR167g, osa-miR167g, osa-miRNA167g ,miR167j, osa-miR167j, osa-MIR167j,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,OsmiR399k, osa-MIR399k,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a
37380	22138690	Huang X., Zhao Y., Wei X., Li C., Wang A., Zhao Q., Li W., Guo Y., Deng L., Zhu C., Fan D., Lu Y., Weng Q., Liu K., Zhou T., Jing Y., Si L., Dong G., Huang T., Lu T., Feng Q., Qian Q., Li J., Han B.	Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.	Nat. Genet.	44(1)	32-9	2012	LK3,_,_,_,ALK,C,RC,WX1	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,OsRAL6,OsAsp1,IBF1, OsFBX310, FBX310,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
37381	17601170	Jorge G??mez-Ariza, Campo S., Rufat M., Montserrat Estop??, Messeguer J., Blanca San Segundo, Mar??a Coca	Sucrose-mediated priming of plant defense responses and broad-spectrum disease resistance by overexpression of the maize pathogenesis-related PRms protein in rice plants.	Mol. Plant Microbe Interact.	20(7)	832-42	2007	NH1,_,_,PAL,POX22.3,PR1A,PR10A,PR1B	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,TLP, PR5,Sci1, PR6, OsSci1, OsPR6,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
37382	14730064	Kolukisaoglu U., Weinl S., Blazevic D., Batistic O., J?rg Kudla	Calcium sensors and their interacting protein kinases: genomics of the Arabidopsis and rice CBL-CIPK signaling networks.	Plant Physiol.	134(1)	43-58	2004	CIPK14,CIPK02,CIPK21,CIPK26,CIPK03,CIPK04,CIPK06,CIPK07,CIPK09,CIPK10,CIPK13,CIPK16,CIPK17,CIPK18,CIPK27,CIPK28,CIPK29,CBL1,CBL8,CBL2,CIPK01,CIPK08,PK4,CIPK05,CIPK20,CIPK30,CBL5,CBL7,CBL9,CIPK22,CBL6,CIPK15,CBL10,CIPK23,CIPK11,CIPK25,CIPK24,PK7,CBL3,CBL4	OsCIPK14,OsCIPK02, CIPK2, OsCIPK2,OsCIPK21,OsCIPK26,OsCIPK03, CIPK3, OsCIPK3,OsCIPK04, CIPK4, OsCIPK4,OsCIPK06, CIPK6, OsCIPK6 ,OsCIPK07, CIPK7, OsCIPK7,OsCIPK09, CIPK9, OsCIPK9,OsCIPK10, CIPK10, OsCIPK10,OsCIPK13,OsCIPK16,OsCIPK17,OsCIPK18,OsCIPK27,OsCIPK28,OsCIPK29,OsCBL1, Os-CBL1,OsCBL8,OsCBL2,OsCIPK01, CIPK1, OsCIPK1,OsCIPK08, CIPK8, OsCIPK8,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19,OsCIPK05, CIPK5, OsCIPK5, OsSTA7,OsCIPK20,OsCIPK30,OsCBL5,OsCBL7,OsCBL9,OsCIPK22,OsCBL6,OsCIPK15,OsCBL10,OsCIPK23, Os-CIPK23,OsCIPK11, CIPK11, OsMSURPK2, OsCIPK11,OsCIPK25,OsCIPK24, SOS2, OsSOS2,OsPK7, OsPK07, OsCIPK12, CIPK12,OsCBL3,OsCBL4, SOS3, OsSOS3
37383	22253446	Hashimoto K., Eckert C., Uta Ansch??tz, Scholz M., Held K., Waadt R., Reyer A., Hippler M., Becker D., J?rg Kudla	Phosphorylation of calcineurin B-like (CBL) calcium sensor proteins by their CBL-interacting protein kinases (CIPKs) is required for full activity of CBL-CIPK complexes toward their target proteins.	J. Biol. Chem.	287(11)	7956-68	2012	CIPK23,CBL1,CBL8,CBL2,CBL3,CBL5,CBL4,CIPK24,CIPK01,CBL7,CBL9,CBL6,CBL10	OsCIPK23, Os-CIPK23,OsCBL1, Os-CBL1,OsCBL8,OsCBL2,OsCBL3,OsCBL5,OsCBL4, SOS3, OsSOS3,OsCIPK24, SOS2, OsSOS2,OsCIPK01, CIPK1, OsCIPK1,OsCBL7,OsCBL9,OsCBL6,OsCBL10
37384	11909851	Koeduka T., Matsui K., Akakabe Y., Kajiwara T.	Catalytic properties of rice alpha-oxygenase. A comparison with mammalian prostaglandin H synthases.	J. Biol. Chem.	277(25)	22648-55	2002	_	PIOX, RalphaO
37385	16582486	Lloyd T., Krol A., Campanaro D., Malkowski M.	Purification, crystallization and preliminary X-ray diffraction analysis of pathogen-inducible oxygenase (PIOX) from Oryza sativa.	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	62(Pt 4)	365-7	2006	_	PIOX, RalphaO
37386	15069599	Liu P., Zhu J., Lu Y.	Marker-assisted selection in segregating generations of self-fertilizing crops.	Theor. Appl. Genet.	109(2)	370-6	2004		
37387	0	Suzuki M., Bashir K., Inoue H., Takahashi M., Nakanishi H., Nishizawa N.K.	Accumulation of starch in Zn-deficient rice	Rice (N Y)	5	9	2012	NAS2,NAS1,IRT1,ZIP3,ZIP1,HMA1,RNS1,RNS2,RNS3,RNS5,RNS6,NAAT4,_,ZIP2,ZIP6,ZIP4,ZIP5,ZIP7,_,ZIP8,RNS4,NAS3	OsNAS2,OsNAS1,OsIRT1,OsZIP3,OsZIP1,OsHMA1, osHMA1,OsRNS1,OsRNS2,OsRNS3,OsRNS5,OsRNS6,OsNAAT4, OsNAAT1 ,OsZIP9, ZIP9,OsZIP2, OsZIP11, ZIP11 ,OsZIP6,OsZIP4,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsZIP7,OsZIP10, ZIP10,OsZIP8, OsZIP1,OsRNS4, OsRRP, RNaseDIS,OsNAS3
37388	19756234	Singla B., Jitendra P Khurana, Khurana P.	Structural characterization and expression analysis of the SERK/SERL gene family in rice (Oryza sativa).	Int J Plant Genomics	2009	539402	2009	_,_,_,_,_,_,_,TMS10,_,_,_	OsSERL3,OsWD40-138, OsSERL7,OsSERL1, OsBAK1-8,OsSERL5, OsBAK1-4, SERK1,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsSERL4, OsBAK1-9, Docs1,OsSERL2, SERL2, SERK1, OsBAK1-7, BAK1-7,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERL8, OsBAK1-6, SERL8, BAK1-6, TMS10L,OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2
37389	19754838	Li D., Wang L., Wang M., Yun-Yuan Xu, Luo W., Ya-Ju Liu, Zhi-Hong Xu, Li J., Chong K.	Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield.	Plant Biotechnol. J.	7(8)	791-806	2009	_,TMS10,_,BZR1,D2,D61,_	OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3,OsBZR1, Os BZR1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2
37390	20128878	Ishimaru Y., Masuda H., Bashir K., Inoue H., Tsukamoto T., Takahashi M., Nakanishi H., Aoki N., Hirose T., Ohsugi R., Naoko K Nishizawa	Rice metal-nicotianamine transporter, OsYSL2, is required for the long-distance transport of iron and manganese.	Plant J.	62(3)	379-90	2010	NAS2,NAS1,IRT1,YSL2,_,YSL15,NRAMP1	OsNAS2,OsNAS1,OsIRT1,OsYSL2, Os-YSL2, OsYs6 ,OsSAMS3, OsSAMS1, SAMS3, SAMS1,OsYSL15, OsYs7,OsNramp1, OsNRAMP1, OsNramp6
37391	21047815	Umezu N., Umeki N., Mitsui T., Kondo K., Maruta S.	Characterization of a novel rice kinesin O12 with a calponin homology domain.	J. Biochem.	149(1)	91-101	2011	_	OsKCH1, KCH1, OsKCH, KCH, O12
37392	11448759	V Lira-Ruan, G Sarath, R V. Klucas, R Arredondo-Peter	Synthesis of hemoglobins in rice (Oryza sativa var. Jackson) plants growing in normal and stress conditions.	Plant Sci.	161(2)	279-287	2001	Hb2,Hb1	HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1
37393	20376671	Li W., Wu J., Weng S., Zhang D., Zhang Y., Shi C.	Characterization and fine mapping of the glabrous leaf and hull mutants (gl1) in rice (Oryza sativa L.).	Plant Cell Rep.	29(6)	617-27	2010	GL1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3
37394	20490919	Yi N., Oh S.J., Kim Y.S., Jang H.J., Park S.H., Jeong J.S., Song S.I., Choi Y.D., Kim J.K.	Analysis of the Wsi18, a stress-inducible promoter that is active in the whole grain of transgenic rice	Transgenic Res.	20	153-163	2011	WSI18	OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18
37395	0	Zhu X., Yang Q., Yang J., Lei C., Wang J., Ling Z.	Differentiation ability of monogenic lines to Magnaporthe grisea in indica rice.	Acta Phytopathol Sin.	34	361-368	2004	PI27	Pi27, Pi27(t), Pi-27(t)
37396	23741473	Zhou L., Ni E., Yang J., Zhou H., Liang H., Li J., Jiang D., Wang Z., Liu Z., Zhuang C.	Rice OsGL1-6 Is Involved in Leaf Cuticular Wax Accumulation and Drought Resistance.	PLoS ONE	8(5)	e65139	2013	_	Os0053, OsGL1-6
37397	0	Mi-Ok Lee, PU-Gyu ChoP, Jung-A Kim, Young-Ho Jung, Seung-Hee Jung, So Hee Kim, Jin-Won Kim, Sang-Kyu Lee, Jong-Seong Jeon, Randeep R., Ganesh Kumar Agrawal, Nam-Soo Jwa	Two Novel Protein Kinase Genes, OsMSRPK1 and OsMSURPK2, Are Regulated by Diverse Environmental Stresses in Rice	Journal of Plant Biology	49(3)	247-256	2006	_,CIPK11	OsMSRPK1, Orysa;CDKG;1,OsCIPK11, CIPK11, OsMSURPK2, OsCIPK11
37398	0	Tsuda K., Ito Y., Yamaki S., Miyao A., Hirochika H., Kurata N.	Isolation and mapping of three rice mutants that showed ectopic expression of KNOX genes in leaves	Plant Science	177	131-135	2009	OSH1,_,_,OSH6,OSH43,_,OSH15,OSKN2	OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,ONI1,ONI2,OsH6, HOS16,OsH43, H43,ONI3,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
37399	0	Ganesh Kumar Agrawal, Rakwal R., Nam-Soo Jwa	Differential induction of three pathogenesis-related genes, PR10, PR1b and PR5 by the ethylene generator ethephon under light and dark in rice (Oryza sativa L.) seedlings	J. Plant Physiol.	158	133-137	2001	PR5,PR1B,PR10A	OsPR5, Pir2, PR-5, PR5-1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
37400	10707360	Hassa P., Jos? Granado, Freydl E., Urs W?spi, Dudler R.	Syringolin-Mediated Activation of the Pir7b Esterase Gene in Rice Cells Is Suppressed by Phosphatase Inhibitors	MPMI	13	342-346	1999	PIR7B	Pir7b
37401	0	Wakuta S., Hamada S., Ito H., Imai R., Mori H., Matsuura H., Nabeta K., Matsui H.	Comparison of Enzymatic Properties and Gene Expression Profiles of Two Tuberonic Acid Glucoside beta-Glucosidases from Oryza sativa L.	J. Appl. Glycosci	58	67-70	2011	BGLU12,BGLU13	Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13
37402	0	Opassiri R., James R. Ketudat Cairns, Akiyama T., Onnop Wara-Aswapati, Svasti J., Esen A.	Characterization of a rice beta-glucosidase highly expressed in flower and germinating shoot	Plant Science	165(3)	627-638	2003	BGLU30,BGLU7	Os9bglu30, OsBGlu30, bglu 2, bglu2, BGlu2,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
37403	16506311	J?r?me Crouzet, Trombik T., A Staffan Fraysse, Boutry M.	Organization and function of the plant pleiotropic drug resistance ABC transporter family.	FEBS Lett.	580(4)	1123-30	2006	PDR3,PDR7,PDR12,PDR15,PDR5,PDR16,PDR17,PDR19,PDR23,PDR14,PDR21,_,PDR6,PDR1,PDR2,PDR22,PDR11,PDR10,PDR8	OsABCG48, OsPDR3,OsABCG39, OsPDR7,OsABCG42, OsPDR12, OsABCG42_1, OsABCG42_2,OsABCG38, OsPDR15,ABCG43, OsABCG43, ABCG43/PDR5, OsPDR5,OsABCG32, OsPDR16,OsABCG44, OsPDR17,OsABCG47, OsPDR19,OsABCG50, OsPDR23, OsABCG50_1, OsABCG50_2,OsABCG33, OsPDR14,OsABCG46, OsPDR21,OsABCG40, OsPDR4, PDR4,OsPDR6, OsABCG31, OsABCG31_1,OsABCG45, OsPDR1, FCO1,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2,OsABCG35, OsPDR11, OsPDR2,OsABCG34, OsPDR10, OsPDR1,OsPDR8, PDR4, P0410E03.16, OsABCG37, OsPDR4
37404	16375897	Klein M., Burla B., Martinoia E.	The multidrug resistance-associated protein (MRP/ABCC) subfamily of ATP-binding cassette transporters in plants.	FEBS Lett.	580(4)	1112-22	2006	MRP13,MRP14,MRP15,MRP16,MRP17,MRP2,MRP3,MRP5,MRP7,MRP10,MRP11,MRP12,MRP8,MRP4,MRP6,MRP9,MRP1	OsABCC13, OsMRP13, OsMRP5,OsABCC14, OsMRP14, OsABCC14-1, OsABCC14-2,OsABCC15, OsMRP15,OsABCC16, OsMRP16,OsABCC17, OsMRP17,OsABCC2, OsMRP2,OsABCC3, OsMRP3,OsABCC5, OsMRP5,OsABCC7, OsMRP7,OsABCC10, OsMRP10,OsABCC11, OsMRP11,OsABCC12, OsMRP12,OsABCC8, OsMRP8a, OsMRP8a, OsMRP8,OsABCC4, ABCC4, OsMRP4,OsABCC6, OsMRP6,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 ,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1
37405	21901091	Du P., Wu J., Zhang J., Zhao S., Zheng H., Gao G., Wei L., Li Y.	Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors.	PLoS Pathog.	7(8)	e1002176	2011	MIR156J,MIR1432	miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432
37406	15805478	Sunkar R., Girke T., Pradeep Kumar Jain, Jian-Kang Zhu	Cloning and characterization of microRNAs from rice.	Plant Cell	17(5)	1397-411	2005	MIR396E	miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p
37407	18312648	Sunkar R., Zhou X., Zheng Y., Zhang W., Jian-Kang Zhu	Identification of novel and candidate miRNAs in rice by high throughput sequencing.	BMC Plant Biol.	8	25	2008	MIR1427,MIR810B	miR1427, osa-miR1427, osa-MIR1427,miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2
37408	21791435	Peng T., Lv Q., Zhang J., Li J., Du Y., Zhao Q.	Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa).	J. Exp. Bot.	62(14)	4943-54	2011	MIR2871A,MIR5337,MIR5338,MIR5339,MIR5340	miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p,miR5337, osa-miR5337, osa-MIR5337, osa-MIR5337a,miR5338, osa-miR5338, osa-MIR5338,miR5339, osa-miR5339, osa-MIR5339,miR5340, osa-miR5340, osa-MIR5340
37409	19951405	Merchan F., Boualem A., Crespi M., Frugier F.	Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins.	Genome Biol.	10(12)	R136	2009	MIR395Y,MIR395X	miR395y, osa-miR395y, osa-MIR395y,miR395x, osa-miR395x, osa-MIR395x
37410	21352554	Schreiber A.W., Shi B.J., Huang C.Y., Langridge P., Baumann U.	Discovery of barley miRNAs through deep sequencing of short reads	BMC Genomics	12	-	2011	MIR5073,MIR5071,MIR5072,MIR5074,MIR5075,MIR5076,MIR5077,MIR5078,MIR5079,MIR5080,MIR5081,MIR5082,MIR5083	miR5073, osa-miR5073, osa-MIR5073,miR5071, osa-miR5071, osa-MIR5071,miR5072, osa-miR5072, osa-MIR5072,miR5074, osa-miR5074, osa-MIR5074,miR5075, osa-miR5075, osa-MIR5075,miR5076, osa-miR5076, osa-MIR5076,miR5077, osa-miR5077, osa-MIR5077,miR5078, osa-miR5078, osa-MIR5078,miR5079, osa-miR5079, osa-MIR5079, osa-MIR5079a,miR5080, osa-miR5080, osa-MIR5080,miR5081, osa-miR5081, osa-MIR5081,miR5082, osa-miR5082, osa-MIR5082,miR5083, osa-miR5083, osa-MIR5083
37411	0	Zhan X.Y., Wu H.M., Wang H., Cheung A.Y.	Characterization of a rice pollen-specific gene and its expression.	Am. J. Bot.	81(5)	552?561	1994	_	PS1
37412	0	Zhang J., Li X., Jiang G., Xu Y., He Y.	Pyramiding of Xa7 and Xa21 for the improvement of disease resistance to bacterial blight in hybrid rice	Plant Breeding	125(6)	600-605	2006	XA21,XA7	Xa21*, Xa21, OsXA21,Xa7
37413	0	Xu J., Jiang J., Dong X., Ali J., Mou T.	Introgression of bacterial blight (BB) resistance genes Xa7 and Xa21 into popular restorer line and their hybrids by molecular marker-assisted backcross (MABC) selection scheme	Afr. J. Biotechnol.	11(33)	8225-8233	2012	XA21,XA7	Xa21*, Xa21, OsXA21,Xa7
37414	0	Roso A.C., Merotto Jr A., Delatorre C.A., Menezes V.G.	Regional scale distribution of imidazolinone herbicide-resistant alleles in red rice (Oryza sativa L.) determined through SNP markers	Field Crops Res	119(1)	175-182	2010	ALS	OsALS, AHAS
37415	16784536	Colasanti J., Tremblay R., Ada Y M Wong, Coneva V., Kozaki A., Barbara K Mable	The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.	BMC Genomics	7	158	2006	_,_,_,_,_,_,_,_,_,_,_,_,_,_,EHD2/RID1	OsIDD10,OsIDD3,OsIDD5,OsIDD7,OsIDD8,OsIDD9,OsIDD11,OsIDD12,OsIDD13,OsIDD2, IDD2,OsIDD6, IDD6,OsIDD1, IDD1,OsIDD14, LPA1 ,OsIDD4,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2
37416	16669754	Matthew W. Jones-Rhoades, David P. Bartel, Bartel B.	MicroRNAs and Their Regulatory Roles in Plants	Annu. Rev. Plant Biol.	57	19-53	2006	MIR164A,MIR164B	miR164a, osa-miR164a,miR164b, osa-miR164b
37417	19081140	Si Qi Huang, Peng J., Cheng Xiang Qiu, Zhi Min Yang	Heavy metal-regulated new microRNAs from rice.	J. Inorg. Biochem.	103(2)	282-7	2009	MIR605E,MIR601,MIR602A,MIR602B,MIR602C,MIR603,MIR604A,MIR604B,MIR604C,MIR605A,MIR605B,MIR605C,MIR605D,MIR605F,MIR605G,MIR605H,MIR605I,MIR605J,MIR606	miR605e, osa-miR605e, osa-MIR605e, Osa-miR605e,miR601, osa-miR601, osa-MIR601, Osa-miR601,miR602a, osa-miR602a, osa-MIR602a, Osa-miR602a,miR602b, osa-miR602b, osa-MIR602b, Osa-miR602b,miR602c, osa-miR602c, osa-MIR602c, Osa-miR602c,miR603, osa-miR603, osa-MIR603, Osa-miR603,miR604a, osa-miR604a, osa-MIR604a, Osa-miR604a,miR604b, osa-miR604b, osa-MIR604b, Osa-miR604b,miR604c, osa-miR604c, osa-MIR604c, Osa-miR604c,miR605a, osa-miR605a, osa-MIR605a, Osa-miR605a,miR605b, osa-miR605b, osa-MIR605b, Osa-miR605b,miR605c, osa-miR605c, osa-MIR605c, Osa-miR605c,miR605d, osa-miR605d, osa-MIR605d, Osa-miR605d,miR605f, osa-miR605f, osa-MIR605f, Osa-miR605f,miR605g, osa-miR605g, osa-MIR605g, Osa-miR605g,miR605h, osa-miR605h, osa-MIR605h, Osa-miR605h,miR605i, osa-miR605i, osa-MIR605i, Osa-miR605i,miR605j, osa-miR605j, osa-MIR605j, Osa-miR605j,miR606, osa-miR606, osa-MIR606, Osa-miR606
37418	0	S. A. K. Sama V., Himabindu K., M. Sundaram R., C. Viraktamath B., S. Bentur J.	Mapping of a rice gall midge resistance gene, gm3, in RP 2068-18-3-5 and in silico identification of candidate gene(s)	RGN	25	76-77	2010	GM3	gm3*, gm3
37419	0	Himabindu K., SUNEETHA K., S. A. K. Sama V., CHERALU C., R. M. RAO P., S. Bentur J.	A new gene for gall midge resistance in rice variety MR1523	RGN	25	73-75	2010	GM11	Gm11t, Gm11(t), Gm11
37420	0	Vijay Kumar LINGARAJ, Akshay Kumar CHAKRAVARTHY, Thyagaraj Nandipura EREGOWDA	Detection of Asian rice gall midge (Orseolia oryzae) biotype 1 in the new locations of Karnataka, South India	Bull. Insectology	61(2)	277-281	2008	GM1	Gm1, Gm-1, GM-1
37421	0	LU Jia-shi, HE Long-fei, XU Jing, XU Chun-yan, LI Chuang-zhen, WEI Su-mei, SU Jian-mu	Identification and Genetic Analysis of gall midge resistance in Rice Germplasm 91-1A2	Rice Science	20(1)	73-78	2013	GM3,GM5,GM6,GM4,GM1,GM2	gm3*, gm3,Gm5*, Gm5,Gm6(t), Gm6,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
37422	0	Yasala A.K., Rawat N., Kumar Sama V.S.A., Kudapa H.B., Sundaram R.M., Bentur J.S.	In silico analysis for gene content in rice genomic regions mapped for the gall midge resistance genes	Plant OMICS	5	405-413	2012	GM8,GM1,GM3,GM4,GM6,GM7,GM11,GM2	Gm8(t), Gm8,Gm1, Gm-1, GM-1,gm3*, gm3,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm6(t), Gm6,Gm7*, Gm7,Gm11t, Gm11(t), Gm11,Gm2, Gm-2, GM-2
37423	0	Sundaram R.M.	Fine mapping of rice gall midge resistance genes Gm1 and Gm2 and validation of the linked markers.	PhD thesis, University of Hyderabad, India			2007	GM1,GM2	Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
37424	0	Tiwari S., S. Bentur J., Mishra B., Aravind Kumar A., Kole C.	Reaction of gene differential rice varieties against gall midge Orseolia oryzae (Wood-Mason) biotypes in the greenhouse	Indian J. Genet.	65(4)	313-314	2005	GM10,GM2,GM8,GM1,GM3,GM4,GM5,GM6,GM7,GM9	Gm10, Gm10(t),Gm2, Gm-2, GM-2,Gm8(t), Gm8,Gm1, Gm-1, GM-1,gm3*, gm3,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5,Gm6(t), Gm6,Gm7*, Gm7,Gm9, Gm9(t)
37425	0	Dubey M., Chandel G.	In silico survey and characterization of Resistance Gene Analogues (RGAs) in the genomic regions encompassing gall midge resistance genes Gm4 and Gm5 in rice (Oryza sativa L.)	Plant Omics Journal	3(5)	140-148	2010	GM4,GM5	Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5
37426	0	Mishra R., Sarawgi A.K., Shrivastiva M.N., Rastogi N.K.	Mode of inheritance and allelic relationships of gene(s) governing resistance to gall midge (Orseolia oryzae Wood Mason) in some rice cultivars	Tropical Agricultural Research and Extension	2(1)	13-16	1999	GM2,GM1	Gm2, Gm-2, GM-2,Gm1, Gm-1, GM-1
37427	0	Mishra R., Shrivastava M.N., Sarawgi A.K., Bose P.	STUDIES ON INHERITANCE AND ALLELIC RELATIONSHIP OF GENE (S) GOVERNING RESISTANCE TO GALL MIDGE (ORSOOLIA ORYZAEWOOD MASON) IN SOME DONORS OF RICE	Indian J. of Agric. Res.	34(4)	251-254	2000	GM2,GM1	Gm2, Gm-2, GM-2,Gm1, Gm-1, GM-1
37428	0	J S BENTUR, P VIJAYA LAKSHMI, VSAK SAMA, CH PADMAVATHY, K HIMABINDU	Sources of resistance to the new 4M biotype of rice gall midge (Orseolia oryzae)	Indian Journal of Agricultural Sciences	79(10)	844-846	2009	GM1,GM2	Gm1, Gm-1, GM-1,Gm2, Gm-2, GM-2
37429	0	Kumar A., Shrivastava M.N., Sahu R.K., Shukla B.C., Shrivastava S.K.	Inheritance and allelic relationships of rice gall midge resistance genes in some new donors	Advances in rice genetics. Supplement to Rice genetics IV. Proceedings of the Fourth International Rice Genetics Symposium, 2000, IRRI, Los Ba?os, Philippines.		51-54	2003	GM1,GM3,GM4,GM5,GM6,GM7,GM2	Gm1, Gm-1, GM-1,gm3*, gm3,Gm4(t)*, Gm4(t), Gm4, Gm4t,Gm5*, Gm5,Gm6(t), Gm6,Gm7*, Gm7,Gm2, Gm-2, GM-2
37430	0	Datta K., Velazhahan R., Oliva N., Ona I., Mew T., S. Khush G., Muthukrishnan S., K. Datta S.	Over-expression of the cloned rice thaumatin-like protein (PR-5) gene in transgenic rice plants enhances environmental friendly resistance to Rhizoctonia solani causing sheath blight disease	Theor. Appl. Genet.	98	1138-1145	1999	PR5	OsPR5, Pir2, PR-5, PR5-1
37431	12468735	Kagaya Y., Hobo T., Murata M., Ban A., Hattori T.	Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.	Plant Cell	14(12)	3177-89	2002	TRAB1	OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5
37432	19399245	Rakwal R., Ganesh Kumar Agrawal, Shibato J., Imanaka T., Fukutani S., Tamogami S., Endo S., Sarata Kumar Sahoo, Masuo Y., Kimura S.	Ultra low-dose radiation: stress responses and impacts using rice as a grass model.	Int J Mol Sci	10(3)	1215-25	2009	PR5,APX1,_,CHS,POX22.3,PAL1,PR10A,APX2,PR1B	OsPR5, Pir2, PR-5, PR5-1,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsCatC, CatC, OsCAT,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
37433	22514699	He H., Su J., Shu S., Zhang Y., Ao Y., Liu B., Feng D., Wang J., Wang H.	Two homologous putative protein tyrosine phosphatases, OsPFA-DSP2 and AtPFA-DSP4, negatively regulate the pathogen response in transgenic plants.	PLoS ONE	7(4)	e34995	2012	_,PR5,PR1A	OsPFA-DSP2, OsPP39,OsPR5, Pir2, PR-5, PR5-1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 
37434	12805592	Baxter I., Tchieu J., Michael R Sussman, Boutry M., Michael G Palmgren, Gribskov M., Jeffrey F Harper, Kristian B Axelsen	Genomic comparison of P-type ATPase ion pumps in Arabidopsis and rice.	Plant Physiol.	132(2)	618-28	2003	ALA9,HMA9,ACA7,ACA11,HMA6,HMA5,HMA1,HMA8,HMA7,ECA2,AHA6,ACA10,ALA1,ALA3,ALA5,ALA7,P5,AHA10,AHA9,ALA2,ALA4,ALA6,ALA10,ALA8,HMA2,ACA5,ECA1,AHA4,AHA5,ACA2,ACA9,ACA3,AHA8,ACA1,ACA6,AHA1,AHA2,AHA3,AHA7,ACA4,HMA4,GCC7,ACA8	osALA9,OsHMA9 ,oshma9-1, oshma9-2, HMA9,osACA7, OsACA6, OsACA7, OsPM5ATP4 ,osACA11, OsACA6, OsACA5, OsPM4ATP8,OsHMA5, osHMA6, HMA5,OsHMA8, osHMA5, HMA8,OsHMA1, osHMA1,OsHMA6, osHMA8, HMA6,osHMA7, osHMA7,osECA2,OSA6, OsA6, osAHA6, AHA6,osACA10,osALA1,osALA3,osALA5,osALA7,osP5,OSA10, OsA10, osAHA10, AHA10,OSA9, OsA9, osAHA9, AHA9,osALA2,osALA4,osALA6,osALA10,osALA8,OsHMA2, osHMA2, OsHMA2v ,osACA5, OsACA9, OsACA5, OsPM12ATP4,osECA1, OsECA1,OSA4, OsA4, osAHA4, AHA4,OSA5, OsA5, osAHA5, AHA5,osACA2, OsACA10, OsPM12ATP,osACA9, OsACA2, OsPM2ATP9,osACA3, OsACA4, OsPM3ATPB,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,osACA1, OsACA1, OsACA3, OsPM3ATP2,osACA6, OsACA1, OsACA6, OsPM1ATPaseII,OSA1, OsA1, osAHA1, AHA1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OSA3, OsA3, osAHA3, AHA3, PAM3,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa,osACA4, OsACA8, OsACA4,OsHMA7, osHMA4, HMA7,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3,osACA8, OsACA7
37435	9076986	M Sauter	Differential expression of a CAK (cdc2-activating kinase)-like protein kinase, cyclins and cdc2 genes from rice during the cell cycle and in response to gibberellin.	Plant J.	11(2)	181-90	1997	CYCB2;2,CYCB2;1,CDC2-1,CDC2-2	cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2
37436	11826308	Tanja Fabian-Marwedel, Umeda M., Sauter M.	The rice cyclin-dependent kinase-activating kinase R2 regulates S-phase progression.	Plant Cell	14(1)	197-210	2002	CDKD;1,CYCH;1,CYCB2;2	CDKD;1, Orysa;CDKD;1, R2, CAK R2, CDKD1;3 ,Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2
37437	10036778	M Yamaguchi, M Umeda, H Uchimiya	A rice homolog of Cdk7/MO15 phosphorylates both cyclin-dependent protein kinases and the carboxy-terminal domain of RNA polymerase II.	Plant J.	16(5)	613-9	1998	CDKD;1,CDKB2;1 ,CDC2-2,CDC2-1	CDKD;1, Orysa;CDKD;1, R2, CAK R2, CDKD1;3 ,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1
37438	0	Noda T., Hayashi N., Pham Van Du, Hoang Dinh Dinh, Lai Van E	Distribution of pathogenic races of rice blast fungus in Vietnum	Ann. Phytopathol. Soc. Jpn.	65	526-530	1999	PISH	Pi sh, Pish, Pi-sh, Pish(t)
37439	0	Yasuda N., Fujita Y., Noguchi M.	Identification of avirulence genes in the rice blast fungus corresponding to three resistance genes in Japanese differentials	Journal of General Plant Pathology	70(4)	202-206	2004	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
37440	23800963	Schmidt R., Mieulet D., Hubberten H.M., Obata T., Hoefgen R., Fernie A.R., Fisahn J., San Segundo B., Guiderdoni E., Schippers J.H., Mueller-Roeber B.	SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to SALT Stress in Rice.	Plant Cell	25(6)	2115-31	2013	MSRMK2,ERF131,DREB2A,ZFP179,_	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsZFP179,MAP3K6
37441	23957671	Yang B., Ruan R., Cantu D., Wang X., Ji W., Ronald P.C., Dubcovsky J.	A comparative approach expands the protein-protein interaction node of the immune receptor XA21 in wheat and rice.	Genome	56(6)	315-26	2013	_,NGLF,XA21,_,CIPK14	OsSK4, OsSKL1,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,Xa21*, Xa21, OsXA21,OsPR2, PR2, Gns4, OsGLN2,OsCIPK14
37442	23769924	Tang S.Q., Shao G.N., Wei X.J., Chen M.L., Sheng Z.H., Luo J., Jiao G.A., Xie L.H., Hu P.S.	QTL mapping of grain weight in rice and the validation of the QTL qTGW3.2.	Gene	527(1)	201-6	2013		
37443	23787154	Xu T., Han J.H., Kang H.	Structural features important for the RNA chaperone activity of zinc finger-containing glycine-rich RNA-binding proteins from wheat (Triticum avestivum) and rice (Oryza sativa).	Phytochemistry	94	28-35	2013	_,_	OsRZ1,OsRZ2
37444	23820081	Wu T., Tang D., Chen W., Huang H., Wang R., Chen Y.	Expression of antimicrobial peptides thanatin(S) in transgenic Arabidopsis enhanced resistance to phytopathogenic fungi and bacteria.	Gene	527(1)	235-42	2013	CHT1	Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1
37445	23756196	Dhadi S.R., Deshpande A., Driscoll K., Ramakrishna W.	Major cis-regulatory elements for rice bidirectional promoter activity reside in the 5'-untranslated regions.	Gene	526(2)	400-10	2013		
37446	23957676	Ge Z.Y., Wan P.J., Cheng X.F., Zhang Y., Li G.Q., Han Z.J.	Cloning and characterization of serpin-like genes from the striped rice stem borer, Chilo suppressalis.	Genome	56(6)	359-66	2013		
37447	23872535	Yang Y., Zhong J., Ouyang Y.D., Yao J.	The integrative expression and co-expression analysis of the AGO gene family in rice.	Gene	528(2)	221-35	2013	SHL4,AGO14,AGO15,AGO17,AGO1D,AGO18,AGO3,AGO1A,AGO1B,AGO12,AGO16,AGO13,AGO2,AGO11,AGO4B,AGO4A,AGO1C	shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsAGO14,OsAGO15,OsAGO17,OsAGO1d, AGO1d,OsAGO18,OsAGO3,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO1b, AGO1b, AGO1-2 ,OsAGO12,OsAGO16, OsAGO6, ZP1,OsAGO13,OsAGO2,OsAGO11,OsAGO4b, AGO4-1 ,OsAGO4a, AGO4-2,OsAGO1c, OsAGO1, AGO1, AGO1c
37448	23839787	Zhai J., Zhao Y., Simon S.A., Huang S., Petsch K., Arikit S., Pillay M., Ji L., Xie M., Cao X., Yu B., Timmermans M., Yang B., Chen X., Meyers B.C.	Plant MicroRNAs Display Differential 3' Truncation and Tailing Modifications That Are ARGONAUTE1 Dependent and Conserved Across Species.	Plant Cell	25(7)	2417-28	2013	MIR166N,MIR166G,MIR166D,MIR166E,MIR166B,_,MIR166H,MIR166L,MIR166C,MIR166F,MIR166A,MIR166K	miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p,HEN1, Os-HEN1,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR166f, osa-miR166f,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p
37449	23836636	Jung D.S., Ryou M.H., Sung Y.J., Park S.B., Choi J.W.	Recycling rice husks for high-capacity lithium battery anodes.	Proc. Natl. Acad. Sci. U.S.A.	110(30)	12229-34	2013		
37450	23644253	Xiong W., Xu X., Zhang L., Wu P., Chen Y., Li M., Jiang H., Wu G.	Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.).	Gene	524(2)	124-32	2013		
37451	23950527	Normile D.	Vietnam turns back a 'tsunami of pesticides'.	Science	341(6147)	737-8	2013		
37452	23958655	Kim D.Y., Kwon S.I., Choi C., Lee H., Ahn I., Park S.R., Bae S.C., Lee S.C., Hwang D.J.	Expression analysis of rice VQ genes in response to biotic and abiotic stresses.	Gene	529(2)	208-14	2013	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsVQ5,OsVQ37,OsVQ21,OsVQ22,OsVQ11,OsVQ12,OsVQ13,OsVQ14,OsVQ20,OsVQ19,OsVQ2,OsVQ7,OsVQ8,OsVQ16,OsVQ18,OsVQ25,OsVQ26,OsVQ27,OsVQ30,OsVQ31,OsVQ32,OsVQ36,OsVQ38,OsVQ39,OsVQ3,OsVQ1,OsVQ4,OsVQ6,OsVQ9,OsVQ15,OsVQ17,OsVQ23,OsVQ24,OsVQ28,OsVQ29,OsVQ33,OsVQ34,OsVQ35,OsVQ10, VQ10
37453	23979580	Ikeda K.I., Vu B.V., Kadotani N., Tanaka M., Murata T., Shiina K., Chuma I., Tosa Y., Nakayashiki H.	Is the Fungus Magnaporthe Losing DNA Methylation?	Genetics	195(3)	845-55	2013		
37454	23948082	Nie D.M., Ouyang Y.D., Wang X., Zhou W., Hu C.G., Yao J.	Genome-wide analysis of endosperm-specific genes in rice.	Gene	530(2)	236-47	2013	_,_,_,_,_,_,HSFA7,HAP2I,_,_,HAP3D,GSTF12,_,_,DHN6,_,_,LEA3,_,TIP3;2,_,ERF44,_,_,_,_,_,_,GLUD1,HAP5I,RPBF,_,HSP70,_,_,_,_,_,_,_,_,_,_,_,_,_,AMY3A,LEA14,_,_,_,_,_,LEA32,_,_,_,_,_,CYP71X12,GLUA3,_,GLUC,_,_,_,_,RLCK192,LEA33,_,_,_,PME20,_,_,BGAL14,IAA29,NAC127,TIP3;1,_,_,_,_,_,_,C3H1,_,_,_,_,_,_,_,_,_,GLYI10,_,_,_,ALAAT5,_,_,TMS5,_,_,OSCA2.5,GELP78,GLUA2,_,ERF115,_,BT1-1,HAP3K,GLP8-2,GLUA1,NAC25,_,_,RSUS3,_,HAP5L,RISBZ1,_,GLUBX,_,_,GLB1,_,FIE1,SCP27,_,_,_,_,_,_,_,_,_,_,_,LEA30,_,_,_,_,_,_,C3H10,ENODL6,NAC26	OsEnS-142,OsPUB77, OsEnS-73,OsEnS-106,OsEnS-56, pro10.2,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,OsEnS-40, EnS-40,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsEnS-9, OsHsfA7a, HsfA7a ,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsEnS-25, DEFL2, OsDEFL2, OsDf-02, Df-02,OsEnS-91,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9,OsGSTF12, OsEnS-7,OsEnS-95,OsEnS-51,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21,RASI, OsEnS-69,OsEnS-148,OsLEA3, OsEnS-84,OsEnS-149,OsTIP3;2, TIP3-2, OsEnS-70,OsEnS-52,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsEnS-147,RAG2, RA14B, RA14, OsEnS-98,OsEnS-89, OsPYL13, PYL13,OsEnS-18, EnS-18, Os6,OsEnS-68,OsEnS-14,GluD1, GluD-1, OsEnS-33, EnS-33,OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsEnS-140,OsHSP70, OsEnS-45, EnS-45,OsEnS-78,OsEnS-125,OsEnS-67,OsEnS-119,OsEnS-104,Os_F0785, OsEnS-103,OsEnS-110,OsEnS-71,OsEnS-115,OsEnS-102,OsEnS-59,OsEnS-10,OsEnS-35,Amy3A/B/C*(RAmy3A/B/C), Amy3A, RAmy3A/B/C, Amy3A/B/C*, AMY1.2, Amy5, RAmy3A, OsEnS-129,Lea14A, OsLEA5, OsEnS-2,OsEnS-19,OsEnS-27,OsEnS-42,OsEnS-46,OsEnS-49,OsLEA32, OsEnS-55,OsPRR12, Rra17, OsRRA17, OsEnS-61,OsEnS-62,OsEnS-66,OsEnS-79,OsEnS-57, EnS-57, CDP3.1 ,OsEnS-26, EnS-26, Os CYP71X12,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,OsEnS-64, PCC13-62,GluC, OsEnS-36, EnS-36, GLU2.2,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,REP-1, OsSAG12-1, SAG12-1, OsEnS-21,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,OsEnS-80,OsEnS-81, OsRLCK192,OsLEA33, D34, OsEnS-85,OsEnS-96,RA5B, OsEnS-99,OsEnS-105,OsPME20, OsEnS-109,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,OsBgal14, OsBGal14, OsEnS-135,OsIAA29, OsEnS-141,ONAC127, OsEnS-145,OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139,OsEnS-112,OsEnS-114,OsEnS-120,OsEnS-122,OsEnS-131,OsEnS-127,OsC3H1, OsEnS-1,OsEnS-6,OscytME3, OsEnS-13,OsEnS-17,ole16, OsEnS-72,OsEnS-74,OsEnS-126,OsEnS-134,OsEnS-138,OsEnS-151,OsGLYI10, OsEnS-113,OsEnS-150, OsDR, DR,OsEnS-130, OsPFK09, PFK09, PFK9,OsEnS-76, pro13b.19,OsEnS-128, OsAlaAT5, AlaAT5,OsEnS-58,OsEnS-38, OsPARP3, PARP3,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,OsEnS-146, EnS-146, OsEnS146, EnS146 ,OsEnS-108, EnS-108, DEFL,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,RA17, RAP, RAG1, OsEnS-97,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsGLP8-2, GER3, OsGER3, GLP16, OsEnS-117,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,ONAC025, ONAC25, OsEnS-144,OsEnS-15, EnS-15,Prol-17, OsEnS-88, pro16.2, PROLM24,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111,OsEnS-86, EnS-86, MEG3,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsEnS-32, EnS-32,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1,RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25,Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,Prol-16, OsEnS-87, EnS-87, pro16.1,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsEnS-44, EnS-44, OsEnS44, EnS44,OsEnS-4,RA16, OsEnS-100,OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT,OsEnS-101,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90,OsEnS-63,OsEnS-60,OsEnS-48,OsEnS-50,OsFbox529, Os_F0667, OsEnS-132,OsLEA30, OsEnS-43,R2R3-MYB, OsEnS-23,OsEnS-28,OsEnS-37,OsEnS-39,OsEnS-3,OsEnS-53,OsC3H10, OsTZF8, OsCCCH-Zn-2, OsEnS-12,OsENODL6, OsELA2, ELA2, OsEnS-24,ONAC026, ONAC26, OsEnS-8
37455	23913002	Uga Y., Sugimoto K., Ogawa S., Rane J., Ishitani M., Hara N., Kitomi Y., Inukai Y., Ono K., Kanno N., Inoue H., Takehisa H., Motoyama R., Nagamura Y., Wu J., Matsumoto T., Takai T., Okuno K., Yano M.	Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions.	Nat. Genet.	45(9)	1097-102	2013	DRO1	Dro1
37456	23934883	Wimmer V., Lehermeier C., Albrecht T., Auinger H.J., Wang Y., Sch?n CC.	Genome-Wide Prediction of Traits with Different Genetic Architecture Through Efficient Variable Selection.	Genetics	195(2)	573-87	2013		
37457	23908221	Pennisi E.	Geography. Advancing seasons in China.	Science	341(6145)	482-3	2013		
37458	23979575	Xu S.	Genetic Mapping and Genomic Selection Using Recombination Breakpoint Data.	Genetics	195(3)	1103-15	2013		
37459	23940322	Gao Z.Y., Zhao S.C., He W.M., Guo L.B., Peng Y.L., Wang J.J., Guo X.S., Zhang X.M., Rao Y.C., Zhang C., Dong G.J., Zheng F.Y., Lu C.X., Hu J., Zhou Q., Liu H.J., Wu H.Y., Xu J., Ni P.X., Zeng D.L., Liu D.H., Tian P., Gong L.H., Ye C., Zhang G.H., Wang J., Tian F.K., Xue D.W., Liao Y., Zhu L., Chen M.S., Li J.Y., Cheng S.H., Zhang G.Y., Wang J., Qian Q.	Dissecting yield-associated loci in super hybrid rice by resequencing recombinant inbred lines and improving parental genome sequences.	Proc. Natl. Acad. Sci. U.S.A.	110(35)	14492-7	2013	LAX1,HD5	lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
37460	23943860	Miao C., Tang D., Zhang H., Wang M., Li Y., Tang S., Yu H., Gu M., Cheng Z.	CENTRAL REGION COMPONENT1, a Novel Synaptonemal Complex Component, Is Essential for Meiotic Recombination Initiation in Rice.	Plant Cell	25(8)	2998-3009	2013	ZEP1,TOP6A1,SPO11-4,_,PAIR2,PAIR1,RAD21-4,PAIR3	OsZEP1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsSPO11-4, OsSPO11D,CRC1,Pair2, OsPAIR2, OsASY1,Pair1,OsRad21-4, REC8, OsREC8, OsRAD21-4,
37461	23777258	Shi B., Ni L., Liu Y., Zhang A., Tan M., Jiang M.	OsDMI3-mediated activation of OsMPK1 regulates the activities of antioxidant enzymes in abscisic acid signalling in rice.	Plant Cell Environ.			2013	IPD3,MAPK6,DMI3	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
37462	23756993	Thakur J.K., Agarwal P., Parida S., Bajaj D., Pasrija R.	Sequence and expression analyses of KIX domain proteins suggest their importance in seed development and determination of seed size in rice, and genome stability in Arabidopsis.	Mol. Genet. Genomics	288(7-8)	329-46	2013	HAC704,HAC701,_,_,_,_,_,HAC703,_,_,_	OsHAC704, OsKIX_4, OsHAC12 ,OsHAC701, OsKIX_1, OsHAC5,OsKIX_8,OsKIX_9,OsKIX_11,OsMED15_2, OsKIX_10, MED15_2, KIX_10,OsMED15_1, MED15_1, OsKIX_3, KIX_3,OsHAC703, OsKIX_2, OsHAC1,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,OsFBX283, OsKIX_6, OsFbox434, Os_F0157
37463	23811195	Hua Y., Sansenya S., Saetang C., Wakuta S., Ketudat Cairns JR.	Enzymatic and structural characterization of hydrolysis of gibberellin A4 glucosyl ester by a rice beta-d-glucosidase.	Arch. Biochem. Biophys.	537(1)	39-48	2013	BGLU31,BGLU12,BGLU6,BGLU18,BGLU7	Os9bglu31, Os9BGlu31 ,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,Os3bglu6, Os3BGlu6, 3BGlu6,Os4bglu18, Os4Bglu18, Os4BGlu18,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
37464	23762371	Lu Z., Huang X., Ouyang Y., Yao J.	Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice.	PLoS ONE	8(6)	e65426	2013	_,_,_,_,_,_,_,_,_,_,_,_,_,SDG736,_,_,_,_,_,_,_,_,_,_,_,_,_,SDG714,_,_,_,_,_,_,_,_,_,_,_,_,IEZ1,SDG725,CLF	SDG724, LVP1, OsSET34,OsSET10, SDG712 ,OsSET36,OsSET14, SDG739 ,OsSET17, SDG716 ,OsSET18, SDG738 ,OsSET19, SDG708 ,OsSET21, SDG722 ,OsSET23,OsSET26, SDG731 ,OsSET28, SDG740 ,OsSET29,OsSET31, SDG707 ,SDG736, OsSET9,OsSET27, SDG701 ,OsSET1, SDG721,OsSET2, SDG705,OsSET3, SDG729 ,OsSET6, SDG720 ,OsSET7, SDG730,OsSET11, SDG706 ,OsSET12,OsSET13,OsSET37, SDG732 ,OsSET38, SDG741 ,OsSET39,OsSET22, SDG728, OsSUVH8,SDG714, OsSET5, OsSUVH4,OsSET35, SDG727, OsSUVH6,OsSET40, SDG733, OsSUVH11,OsSET30, SDG710, OsSUVH10,OsSET20, SDG703, OsSUVH5,OsSET41, SDG704, OsSUVH1,OsSET4, SDG709, OsSUVH7,OsSET16, SDG713, OsSUVH3,OsSET32, SDG715, OsSUVH9,OsSET25, SDG726, OsSUVH2,OsSET42, SET42, SDG734, OsSUVH12, SUVH12,OsSET33, SET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723 ,OsSET43, SDG717 ,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718,OsSDG725, OsSET8, ASHH2,OsSET24, SDG711, EZ1, OsCLF
37465	23812082	Song Y., Xu Z.F.	Ectopic Overexpression of an AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) Gene OsIAA4 in Rice Induces Morphological Changes and Reduces Responsiveness to Auxin.	Int J Mol Sci	14(7)	13645-56	2013	IAA4,IAA18,IAA6,IAA9,IAA8,IAA10	OsIAA4,OsIAA18,OsIAA6,OsIAA9, OsIAA2,OsIAA8,OsIAA10, OsIAA5
37466	23849131	Huang J., Qin F., Zang G., Kang Z., Zou H., Hu F., Yue C., Li X., Wang G.	Mutation of OsDET1 increases chlorophyll content in rice.	Plant Sci.	210	241-9	2013	_	OsDET1
37467	23793712	Ji J., Tang D., Wang M., Li Y., Zhang L., Wang K., Li M., Cheng Z.	MRE11 is required for homologous synapsis and DSB processing in rice meiosis.	Chromosoma	122(5)	363-76	2013	TOP6A1,ZEP1,RMC1,_,COM1,RAD21-4,PAIR2,PAIR3	OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsZEP1,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,MRE11, OsMRE11,OsCOM1,OsRad21-4, REC8, OsREC8, OsRAD21-4,Pair2, OsPAIR2, OsASY1,
37468	23849121	Liu D.R., Huang W.X., Cai X.L.	Oligomerization of rice granule-bound starch synthase 1 modulates its activity regulation.	Plant Sci.	210	141-50	2013	WX1,_	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsGCS, GCS, gamma-ECS/GCS, gamma-ECS
37469	23803583	Dong H., Fei G.L., Wu C.Y., Wu F.Q., Sun Y.Y., Chen M.J., Ren Y.L., Zhou K.N., Cheng Z.J., Wang J.L., Jiang L., Zhang X., Guo X.P., Lei C.L., Su N., Wang H., Wan J.M.	A rice virescent-yellow leaf mutant reveals new insights into the role and assembly of plastid caseinolytic protease in higher plants.	Plant Physiol.	162(4)	1867-80	2013	V3,CLPR4,RPS15,RPS15,CLPP1,VATPE,CLPT,CLPP5,CLPP3,RPOA,_,SIG2A,CLPP4,V1,V2,VYL,RPOTP,CAB1R,PSBA	v3, RNRL1, rnrl1, RNR1, RNRL,OsClpR4, ClpR4, OsClp1, CLP1,rps15,rps15,OsClpP1, ClpP1,v-ATP-E,OsClpT, ClpT,OsClpP5, ClpP5, OsClp4, CLP4,OsClpP3, OsClp2, CLP2,RpoA,Lhcp2, LhcpII, LchP2 ,OsSIG2A, OsSig2A,OsClpP4, ClpP4, OsClp11, CLP11,v1, NUS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsRpo Tp, OsRpoTp, NEP, RpoTp,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1
37470	23743654	Lee H.J., Abdula S.E., Jang D.W., Park S.H., Yoon U.H., Jung Y.J., Kang K.K., Nou I.S., Cho Y.G.	Overexpression of the glutamine synthetase gene modulates oxidative stress response in rice after exposure to cadmium stress.	Plant Cell Rep.	32(10)	1521-9	2013	GLN1;1	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1
37471	23780733	Louren?o T., Sapeta H., Figueiredo D.D., Rodrigues M., Cordeiro A., Abreu I.A., Saibo N.J., Oliveira M.M.	Isolation and characterization of rice (Oryza sativa L.) E3-ubiquitin ligase OsHOS1 gene in the modulation of cold stress response.	Plant Mol. Biol.	83(4-5)	351-63	2013	P5CS,DREB1A,_,_	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsHOS1, HOS1,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1
37472	23732981	Dangwal M., Malik G., Kapoor S., Kapoor M.	De Novo Methyltransferase, OsDRM2, Interacts with the ATP-dependent RNA helicase, OseIF4A, in Rice.	J. Mol. Biol.	425(16)	2853-66	2013	DRM1B,DRM3,DRM1A,EIF4A2,DRM2	OsDRM1b,OsDRM3, DRM2-2 ,OsDRM1a,eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,OsDRM2, osdrm2, DRM2-1
37473	23793979	Xu J., Xiong W., Cao B., Yan T., Luo T., Fan T., Luo M.	Molecular characterization and functional analysis of "fruit-weight2.2-like" gene family in rice.	Planta	238(4)	643-55	2013	_,_,_,_,_,_,_,_	OsFWL4, FWL4,OsFWL7, FWL7,OsFWL1,OsFWL2,OsFWL5, FWL5, OsPcr1, PCR1, OsPCR1,OsFWL8, FWL8,OsFWL3, FWL3,OsFWL6, FWL6
37474	23808500	Tuteja N., Sahoo R.K., Garg B., Tuteja R.	OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa?L. cv. IR64).	Plant J.	76(1)	115-27	2013	_	OsSUV3, SUV3
37475	23748776	Yamane H.	Biosynthesis of phytoalexins and regulatory mechanisms of it in rice.	Biosci. Biotechnol. Biochem.	77(6)	1141-8	2013		
37476	23086454	Li Y.S., Sun H., Wang Z.F., Duan M., Huang S.D., Yang J., Huang J., Zhang H.S.	A novel nuclear protein phosphatase 2C negatively regulated by ABL1 is involved in abiotic stress and panicle development in rice.	Mol. Biotechnol.	54(2)	703-10	2013	PP2C1,BIPP2C1,BZIP46	OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108,OsBIPP2C1, OsPP45, PP45,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46
37477	23979891	Dong Y., Chen Z., Pei X., Wang F., Yuan Q., Wu H., Jia S., Peng Y.	Variation of the OsGI intron and its phenotypic associations in Oryza rufipogon Griff. and Oryza sativa L.	Genet. Mol. Res.	12(3)	2652-69	2013	GI	OsGI, Gi, Os-GI
37478	23846875	Wang J.C., Xu H., Zhu Y., Liu Q.Q., Cai X.L.	OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm.	J. Exp. Bot.	64(11)	3453-66	2013	ALK,ISA2,AGPL1,SBE1,SBE3,WX1,RISBZ1	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsISA2,OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1
37479	23855375	Schmidt R., Schippers J.H., Mieulet D., Obata T., Fernie A.R., Guiderdoni E., Mueller-Roeber B.	MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways.	Plant J.	76(2)	258-73	2013	CEL9A,EXPA8,EXPA4,EXPB6,_,EXPB3,_,EXPB2	OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A ,OsEXPA8, OsEXP8, osaEXPa1.17,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEXPB6, osaEXPb1.8, EXPb1.8,OsGH9B15, OsGLU14, GH9B15, GLU14,OsEXPB3, osaEXPb1.10, EXPb1.10,OsMPS,OsEXPB2, OsaEXPb1.9, EXPb1.9
37480	23683934	Passaia G., Spagnolo Fonini L., Caverzan A., Jardim-Messeder D., Christoff A.P., Gaeta M.L., de Araujo Mariath JE., Margis R., Margis-Pinheiro M.	The mitochondrial glutathione peroxidase GPX3 is essential for H2O2 homeostasis and root and shoot development in rice.	Plant Sci.	208	93-101	2013	GPX1,GPX5,GPX4,GPX3	OsGpx1, GPX1, OsGPx01, OsGPX1,OsGpx5, GPX5, OsGPx05,OsGpx4, GPX4, OsGPx04, OsGPX4,OsGpx3, GPX3, OsGPx03
37481	23809026	Molla K.A., Karmakar S., Chanda P.K., Ghosh S., Sarkar S.N., Datta S.K., Datta K.	Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice.	Mol. Plant Pathol.	14(9)	910-22	2013	PAL1,OXO2,CHT1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1
37482	23884108	Zhu Z., Tan L., Fu Y., Liu F., Cai H., Xie D., Wu F., Wu J., Matsumoto T., Sun C.	Genetic control of inflorescence architecture during rice domestication.	Nat Commun	4	2200	2013	LG1	SPL8, OsSPL8, OsLG1
37483	23873084	Zhang Y.C., Yu Y., Wang C.Y., Li Z.Y., Liu Q., Xu J., Liao J.Y., Wang X.J., Qu L.H., Chen F., Xin P., Yan C., Chu J., Li H.Q., Chen Y.Q.	Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching.	Nat. Biotechnol.	31(9)	848-52	2013	MIR397B,MIR397A,LAC15	miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsLAC, OsLAC15, OsLAC13, LAC13 
37484	23869567	Kushwaha H.R., Singla-Pareek SL., Pareek A.	Putative osmosensor - OsHK3b - a histidine kinase protein from rice shows high structural conservation with its ortholog AtHK1 from Arabidopsis.	J. Biomol. Struct. Dyn.			2013	HK3,AHP1	OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2
37485	23852542	Jung K.H., Gho H.J., Nguyen M.X., Kim S.R., An G.	Genome-wide expression analysis of HSP70 family genes in rice and identification of a cytosolic HSP70 gene highly induced under heat stress.	Funct. Integr. Genomics	13(3)	391-402	2013	CTHSP70-1,_	OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6 ,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 
37486	23893219	Edstam M.M., Blomqvist K., Ekl?f A., Wennergren U., Edqvist J.	Coexpression patterns indicate that GPI-anchored non-specific lipid transfer proteins are involved in accumulation of cuticular wax, suberin and sporopollenin.	Plant Mol. Biol.			2013	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,OSC6	OsLTPG7, OsLTPg7,OsLTPG22, OsLTPg22,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,OsLTPG26,OsLTPG1, OsLTPg1,OsLTPG3, OsLTPg3,OsLTPG4, OsLTPg4,OsLTPG5, OsLTPg5,OsLTPG8, OsLTPg8,OsLTPG9, OsLTPg9,OsLTPG11, OsLTPg11,OsLTPG12, OsLTPg12,OsLTPG13, OsLTPg13,OsLTPG17, OsLTPg17,OsLTPG18, OsLTPg18,OsLTPG19, OsLTPg19,OsLTPG20, OsLTPg20,OsLTPG23, OsLTPg23,OsLTPG16, OsLTPg16,OsLTPG15, OsLTPg15,OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsLTPG10, OsLTPg10, LTPL83 ,OsLTPG2, OsLTPg2, LTPL82,OsLLA2, OsLTPG27, LLA2, LTPG27,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6
37487	23894405	Zhang H., Niu X., Liu J., Xiao F., Cao S., Liu Y.	RNAi-Directed Downregulation of Vacuolar H(+) -ATPase Subunit A Results in Enhanced Stomatal Aperture and Density in Rice.	PLoS ONE	8(7)	e69046	2013	AHA3,_,_,PLS1,_	OSA3, OsA3, osAHA3, AHA3, PAM3,OsCam1-3, OsCaM1-3, CAM1,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,OsVHA-A, VHAA1, VHA-A1, OsPLS1, OsPSL1/VHA-A1,YDA1, OsMKKK10, MKKK10
37488	23926064	Saito T., Kobayashi N.I., Tanoi K., Iwata N., Suzuki H., Iwata R., Nakanishi T.M.	Expression and Functional Analysis of the CorA-MRS2-ALR-Type Magnesium Transporter Family in Rice.	Plant Cell Physiol.	54(10)	1673-83	2013	_,_,_,_,_,_,_,_,_	OsMRS2-7,OsMRS2-8,OsMRS2-9,OsMGT6, OsMRS2-4,OsMRS2-3,OsMGT1, OsMRS2-2,OsMRS2-5,OsMRS2-6,OsMGT, OsMRS2-1
37489	23980801	Dubouzet J.G., Matsuda F., Ishihara A., Miyagawa H., Wakasa K.	Production of indole alkaloids by metabolic engineering of the tryptophan pathway in rice.	Plant Biotechnol. J.			2013	ASA1,TDC1,TYDC	OASA1 (=ASA1), OsASA1, OASA1, OASA1(D323N), OASA1D,OsTDC, TDC2, OsTDC1,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3
37490	23918968	Huang J., Zhao X., Cheng K., Jiang Y., Ouyang Y., Xu C., Li X., Xiao J., Zhang Q.	OsAP65, a rice aspartic protease, is essential for male fertility and plays a role in pollen germination and pollen tube growth.	J. Exp. Bot.	64(11)	3351-60	2013	_,_,_,_	OsCDR1,OsAP65,OsAsp1,Oryzasin
37491	23924074	Dong X., Wang X., Zhang L., Yang Z., Xin X., Wu S., Sun C., Liu J., Yang J., Luo X.	Identification and characterization of OsEBS, a gene involved in enhanced plant biomass and spikelet number in rice.	Plant Biotechnol. J.			2013	EBS	OsEBS
37492	23949687	Xiang J., Ran J., Zou J., Zhou X., Liu A., Zhang X., Peng Y., Tang N., Luo G., Chen X.	Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.	Plant Cell Rep.	32(11)	1795-806	2013	HSFB2B	HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21
37493	23918260	Liu C., Mao B., Ou S., Wang W., Liu L., Wu Y., Chu C., Wang X.	OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice.	Plant Mol. Biol.			2013	NHX1,CATA,_,_,BZIP71,HKT6,CBSCLC3,_,_	OsNHX1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9,OsVHA-B, VHA-B,OsbZIP71,OsHKT6, OsHKT1;3, HKT1;3,OsCBSCLC3, OsCBSCLC3a, OsCBSCLC3b, OsCLC1, OsCLC-1 ,COR413-TM1, Oscor413-tm1,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C
37494	23707881	Sharma I., Ching E., Saini S., Bhardwaj R., Pati P.K.	Exogenous application of brassinosteroid offers tolerance to salinity by altering stress responses in rice variety Pusa Basmati-1.	Plant Physiol. Biochem.	69	17-26	2013	D61,DWARF4,SALT	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
37495	23927868	Kawano Y., Shimamoto K.	Early signaling network in rice PRR-mediated and R-mediated immunity.	Curr. Opin. Plant Biol.	16(4)	496-504	2013	_,_,RLCK185	OsRacGEF1, RacGEF1,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsRLCK185
37496	23944972	Ji S.H., Gururani M.A., Lee J.W., Ahn B.O., Chun S.C.	Isolation and characterisation of a dwarf rice mutant exhibiting defective gibberellins biosynthesis.	Plant Biol (Stuttg)			2013	KS1,KS3,KS2	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25,OsKS2, KS2, KSL2, OsKSL2, OsTPS27
37497	23918184	Sharma R., Priya P., Jain M.	Modified expression of an auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses.	Planta	238(5)	871-84	2013	GRX8	OsGRX8, OsROXY1, OsROXY2
37498	23963678	Chen Z., Fujii Y., Yamaji N., Masuda S., Takemoto Y., Kamiya T., Yusuyin Y., Iwasaki K., Kato S.I., Maeshima M., Ma J.F., Ueno D.	Mn tolerance in rice is mediated by MTP8.1, a member of the cation diffusion facilitator family.	J. Exp. Bot.	64(14)	4375-87	2013	MTP8.1	OsMTP8.1
37499	23907515	Liu X., Shangguan Y., Zhu J., Lu Y., Han B.	The rice OsLTP6 gene promoter directs anther-specific expression by a combination of positive and negative regulatory elements.	Planta	238(5)	845-57	2013	_	OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL
37500	23967316	Hwang H., Yoon J., Kim H.Y., Min M.K., Kim J.A., Choi E.H., Lan W., Bae Y.M., Luan S., Cho H., Kim B.G.	Unique Features of Two Potassium Channels, OsKAT2 and OsKAT3, Expressed in Rice Guard Cells.	PLoS ONE	8(8)	e72541	2013	KAT2,KAT3,KAT1	OsKAT2,OsKAT3,OsKAT1
37501	23895290	Mishra M., Kanwar P., Singh A., Pandey A., Kapoor S., Pandey G.K.	Plant Omics: Genome-Wide Analysis of ABA Repressor1 (ABR1) Related Genes in Rice During Abiotic Stress and Development.	OMICS	17(8)	439-50	2013	ERF107,ERF103,ERF100,ERF118,ERF124,ERF105,ERF101,ERF106,ERF102,ERF98,ERF104,ERF99	OsERF#107, OsERF107, AP2/EREBP#015, AP2/EREBP15,DERF5, OsDERF5, OsERF#103, OsERF103, AP2/EREBP#130, AP2/EREBP130,OsERF#100, OsERF100, AP2/EREBP#036, AP2/EREBP36,OsERF#118, OsERF118, AP2/EREBP#117, AP2/EREBP117,DERF8, OsDERF8, OsERF#124, OsERF124, AP2/EREBP#158, AP2/EREBP158,OsERF#105, OsERF105, AP2/EREBP#050, AP2/EREBP50,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsERF#098, OsERF098, OsERF98, AP2/EREBP#120, AP2/EREBP120,DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2
37502	23918959	Geng S., Li A., Tang L., Yin L., Wu L., Lei C., Guo X., Zhang X., Jiang G., Zhai W., Wei Y., Zheng Y., Lan X., Mao L.	TaCPK2-A, a calcium-dependent protein kinase gene that is required for wheat powdery mildew resistance enhances bacterial blight resistance in transgenic rice.	J. Exp. Bot.	64(11)	3125-36	2013	CDPK13,AOS2,PAL1,_,PR10A,PR1B,_,WRKY45,NH1,PR1A	OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,ICS1, OsICS1, OsICS, ICS,OsWRKY45,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 
37503	19034497	Song Y., Wang L., Xiong L.	Comprehensive expression profiling analysis of OsIAA gene family in developmental processes and in response to phytohormone and stress treatments.	Planta	229(3)	577-91	2009	IAA13,IAA7,IAA23,IAA17,IAA27,IAA30,IAA28,IAA14,IAA8,IAA25,IAA21,IAA5,IAA4,IAA18,IAA6,IAA9,IAA16,IAA2,IAA3,IAA15,IAA29,IAA24,IAA26,IAA31,IAA1,IAA11,IAA12,IAA10,IAA19,IAA20	OsIAA13, OsIAA1, OsiIAA1,OsIAA7,OsIAA23,OsIAA17,OsIAA27,OsIAA30,OsIAA28,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsIAA8,OsIAA25,OsIAA21,OsIAA5,OsIAA4,OsIAA18,OsIAA6,OsIAA9, OsIAA2,OsIAA16,OsIAA2,OsIAA3,OsIAA15,OsIAA29, OsEnS-141,OsIAA24,OsIAA26,OsIAA3, OsIAA31,OsIAA1, OsIAA4,OsIAA11,OsIAA12,OsIAA10, OsIAA5,OsIAA19,OsIAA20
37504	19888828	Bishun Deo Prasad, Creissen G., Lamb C., Bharat B Chattoo	Overexpression of rice (Oryza sativa L.) OsCDR1 leads to constitutive activation of defense responses in rice and Arabidopsis.	Mol. Plant Microbe Interact.	22(12)	1635-44	2009	PR1-72,PR1A,_,PR1-121,PR1-21,PR1-51,PR1-52,PR1-73,PR1-22,PR1-12,PR1-71,PR1B,PR1-101	OsPR1#072, OsPR1-72, PR1L, OsPR1L,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsCDR1,OsPR1#121, OsPR1-121,OsPR1#021, OsPR1-21,OsPR1#051, OsPR1-51,OsPR1#052, OsPR1-52,OsPR1#073, OsPR1-73,OsPR1#022, OsPR1-22,OsPR1#012, OsPR1-12,OsPR1#071, OsPR1-71,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2
37505	18247056	Mitsuhara I., Iwai T., Seo S., Yanagawa Y., Kawahigasi H., Hirose S., Ohkawa Y., Ohashi Y.	Characteristic expression of twelve rice PR1 family genes in response to pathogen infection, wounding, and defense-related signal compounds (121/180).	Mol. Genet. Genomics	279(4)	415-27	2008	PR1A,PR1B,PR1-121,PR1-21,PR1-51,PR1-52,PR1-73,PR1-12,PR1-71,PR1-22,PR1-72,PR1-101	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR1#121, OsPR1-121,OsPR1#021, OsPR1-21,OsPR1#051, OsPR1-51,OsPR1#052, OsPR1-52,OsPR1#073, OsPR1-73,OsPR1#012, OsPR1-12,OsPR1#071, OsPR1-71,OsPR1#022, OsPR1-22,OsPR1#072, OsPR1-72, PR1L, OsPR1L,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2
37506	20566579	Fu-Jun Qin, Qian-Wen Sun, Li-Min Huang, Xiang-Song Chen, Dao-Xiu Zhou	Rice SUVH histone methyltransferase genes display specific functions in chromatin modification and retrotransposon repression.	Mol Plant	3(4)	773-82	2010	SDG714,_,_,_,_,_,_,_,_,_,_,_,TOS17	SDG714, OsSET5, OsSUVH4,OsSET22, SDG728, OsSUVH8,OsSET35, SDG727, OsSUVH6,OsSET30, SDG710, OsSUVH10,OsSET20, SDG703, OsSUVH5,OsSET41, SDG704, OsSUVH1,OsSET4, SDG709, OsSUVH7,OsSET16, SDG713, OsSUVH3,OsSET32, SDG715, OsSUVH9,OsSET25, SDG726, OsSUVH2,OsSET40, SDG733, OsSUVH11,OsSET42, SET42, SDG734, OsSUVH12, SUVH12,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
37507	21435223	Jeffery L Gustin, Michael J Zanis, David E Salt	Structure and evolution of the plant cation diffusion facilitator family of ion transporters.	BMC Evol. Biol.	11	76	2011	MTP12,MTP1,MTP11,MTP6,MTP11.1,MTP8.1,MTP9,MTP8,MTP5,MTP7	OsMTP12,OsMTP1,OsMTP11,OsMTP6,OsMTP11.1,OsMTP8.1,OsMTP9,OsMTP8, MTP8.2, OsMTP8.2,OsMTP5,OsMTP7
37508	18616466	Margis R., Dunand C., Felipe K Teixeira, Marcia Margis-Pinheiro	glutathione peroxidase family - an evolutionary overview.	FEBS J.	275(15)	3959-70	2008	GPX5,GPX4,GPX1,GPX3,PHGPX	OsGpx5, GPX5, OsGPx05,OsGpx4, GPX4, OsGPx04, OsGPX4,OsGpx1, GPX1, OsGPx01, OsGPX1,OsGpx3, GPX3, OsGPx03,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX 
37509	19788421	Sharma R., R K Mohan Singh, Malik G., Deveshwar P., Akhilesh K Tyagi, Kapoor S., Kapoor M.	Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress.	FEBS J.	276(21)	6301-11	2009	MET1A,CMT2,DRM1B,DNMT2,CMT1,CMT3,DRM3,DRM1A,DRM2,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1,OsCMT2, OsCMT3a, CMT3a,OsDRM1b,OsDNMT2, OsDnmt2,OsCMT1, OsCMT3b,OsCMT3, CMT3-1,OsDRM3, DRM2-2 ,OsDRM1a,OsDRM2, osdrm2, DRM2-1,OsMET1b, OsMET1-2, MET1b, MET1
37510	20088860	Joo Y Kim, Won Y Kim, Kyung J Kwak, Seung H Oh, Yeon S Han, Kang H.	Zinc finger-containing glycine-rich RNA-binding protein in Oryza sativa has an RNA chaperone activity under cold stress conditions.	Plant Cell Environ.	33(5)	759-68	2010	_,_,_	OsRZ3,OsRZ1,OsRZ2
37511	15181212	Won-Yong Song, Martinoia E., Lee J., Kim D., Do-Young Kim, Vogt E., Shim D., Kwan Sam Choi, Hwang I., Lee Y.	A novel family of cys-rich membrane proteins mediates cadmium resistance in Arabidopsis.	Plant Physiol.	135(2)	1027-39	2004	_	OsFWL5, FWL5, OsPcr1, PCR1, OsPCR1
37512	21486996	Monika M Edstam, Viitanen L., Tiina A Salminen, Edqvist J.	Evolutionary history of the non-specific lipid transfer proteins.	Mol Plant	4(6)	947-64	2011	_,_,_,_,OSC6,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LTP2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,OSC4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsLLA1, OsLTPG6, OsLTPg6, OsLTPL1, LLA1, LTPG6, LTPg6, LTPL1,OsLLA6, OsLTPG14, OsLTPg14, LLA6, LTPG14, LTPg14,OsLTPG7, OsLTPg7,OsLTPG22, OsLTPg22,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,YY1, OsLTPc2, OsLtpIII.2, LTP45,OsLTP1.5, OsLtpI.5,OsLTP1.10, OsLtpI.10,OsLTP1.11, OsLtpI.11,OsLTPG20, OsLTPg20,OsLTP2.1, OsLtpII.1,OsLTP2.2, OsLtpII.2,OsLTP2.5, OsLtpII.5,OsLTP2.6, OsLtpII.6 ,OsLTP2.7, OsLtpII.7,OsLTP2.8, OsLtpII.8,OsLTP2.10, OsLtpII.10,OsLTP2.11, OsLtpII.11,OsLTP2.12, OsLtpII.12,OsLTP2.13, OsLtpII.13,OsLTPd1, OsLtpIV.1,OsLTPd2, OsLtpIV.2,OsLTPd3, OsLtpIV.3,OsLTPd4, OsLtpIV.4 ,OsLTPd7, OsLtpV.3,OsLTPd9, OsLtpVI.1,OsLTPd10, OsLtpVI.2,OsLTPd12, OsLtpVI.4,OsLTPx1, OsLtpY.1,OsLTPx2, OsLtpY.2,OsLTPx3, OsLtpY.3,nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,OsLTP2.4, OsLtpII.4,OsLTP1.2, OsLtpI.2,OsLTPd6, OsLtpV.2,OsLTP1.4, OsLtpI.4,OsLTP1.6, OsLtpI.6,OsLTP1.7, OsLtpI.7,OsLTP1.8, OsLtpI.8,OsLTP1.12, OsLtpI.12,OsLTP1.13, OsLtpI.13,OsLTP1.16, OsLtpI.16,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLTP1.19, OsLtpI.19,OsLTPd8, OsLtpV.4, PI,OsLTP1.1, T42, OsLtp1.1, LTP1.1,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,OsLTP2.9, OsLtpII.9, LTP2.9, LtpII.9,OsLTP1.3, OsLtpI.3,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18,OsLTP1.14, OsLtpI.14,OsLTP1.9, OsLtpI.9,OsLTPG1, OsLTPg1,OsLTPG3, OsLTPg3,OsLTPG4, OsLTPg4,OsLTPG8, OsLTPg8,OsLTPG9, OsLTPg9,OsLTPG11, OsLTPg11,OsLTPG12, OsLTPg12,OsLTPG16, OsLTPg16,OsLTPG17, OsLTPg17,OsLTPG18, OsLTPg18,OsLTPG19, OsLTPg19,OsLTPG23, OsLTPg23,OsLTPG15, OsLTPg15,OsLTPG13, OsLTPg13,OsLTPG10, OsLTPg10, LTPL83 ,OsLTPG2, OsLTPg2, LTPL82,OsLTPd5, LTPd5,OsLTP1.15, OsLtpI.15,OsLLA7, OsLTPG21, OsLTPg21, LLA7, LTPG21, LTPg21,OsLTPG5, OsLTPg5,OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL
37513	19825565	Da-Sheng Zhang, Wan-Qi Liang, Yuan Z., Li N., Shi J., Wang J., Yu-Min Liu, Wen-Juan Yu, Da-Bing Zhang	Tapetum degeneration retardation is critical for aliphatic metabolism and gene regulation during rice pollen development.	Mol Plant	1(4)	599-610	2008	_,LAP6,TDR,RAFTIN1,CER1,OSC4,WDA1,_,_	OsMS2, MS2, OsDPW, DPW, DPW1,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,OsCER1, OsGL1-4, Os CER1,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsCHS, FAE, OsFAE1,OsACS
37514	15295114	Hui-Chun Cheng, Pei-Tsung Cheng, Peng P., Ping-Chiang Lyu, Yuh-Ju Sun	Lipid binding in rice nonspecific lipid transfer protein-1 complexes from Oryza sativa.	Protein Sci.	13(9)	2304-15	2004	_	OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18
37515	12011089	Samuel D., Yaw-Jen Liu, Chao-Sheng Cheng, Ping-Chiang Lyu	Solution structure of plant nonspecific lipid transfer protein-2 from rice (Oryza sativa).	J. Biol. Chem.	277(38)	35267-73	2002	LTP2,_	nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18
37516	21044985	Garg R., Jhanwar S., Akhilesh K Tyagi, Jain M.	Genome-wide survey and expression analysis suggest diverse roles of glutaredoxin gene family members during development and response to various stimuli in rice.	DNA Res.	17(6)	353-67	2010	_,GRX22,GRX9,GRX,_,GRX26,GRX13,_,GRX10,GRX18,GRX20,GRX27,NTRC,_,GRX12,GRX2,GRX3,GRX8,GRX7,GRX15,GRX16,GRX17,GRX19,GRX5,GRX11,_,_,_,_,_,_,_,_,_,_,_,_,_,GRX28,GRX21,GRX24,_,GRX23,GRX6,GRX4,GRX25,GRX1,GRX29	OsGRL10, GRL10, OsSTA146, STA146,OsGRX22, OsGRXS17, GRXS17,OsGRX9, OsGrx_C2.1, Grx_C2.1 ,grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2,OsGRL14,OsGRX26,OsGRX13, OsROXY1,OsGRL2,OsGRX10,OsGRX18,OsGRX20,OsGRX27,OsNTRC, NtrC, OsGRL15,OsGRL5,OsGRX12,OsGRX2,OsGRX3,OsGRX8, OsROXY1, OsROXY2,OsGRX7,OsGRX15,OsGRX16,OsGRX17,OsGRX19,OsGRX5,OsGRX11,OsGRL1,OsGRL3,OsGRL4,OsGRL6,OsGRL7,OsGRL9,OsGRL11,OsGRL12,OsGRL13,OsGRL17,OsGRL16,OsGRL18,OsGRL19,OsGRX28,OsGRX21,OsGRX24,OsGRL8,OsGRX23,OsGRX6, OsGrx_I1, Grx_I1,OsGRX4, OsGrx_C7, Grx_C7,OsGRX25,OsGRX1,OsGRX29
37517	20118235	Chen X., Chern M., Patrick E Canlas, Jiang C., Ruan D., Cao P., Pamela C Ronald	A conserved threonine residue in the juxtamembrane domain of the XA21 pattern recognition receptor is critical for kinase autophosphorylation and XA21-mediated immunity.	J. Biol. Chem.	285(14)	10454-63	2010	XB3,XB15,XB24,WRKY62,XA21	Xb3,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,XB24,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,Xa21*, Xa21, OsXA21
37518	21209278	Kang H., Zhu H., Chu X., Yang Z., Yuan S., Yu D., Wang C., Hong Z., Zhang Z.	A novel interaction between CCaMK and a protein containing the Scythe_N ubiquitin-like domain in Lotus japonicus.	Plant Physiol.	155(3)	1312-24	2011	IPD3,DMI3,_	OsIPD3, Osipd3, CYCLOPS, IPD3/CYCLOPS, OsCYCLOPS,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,CIP73, OsCIP73_like
37519	10363369	J F Mart?nez-Garc?a, P H Quail	The HMG-I/Y protein PF1 stimulates binding of the transcriptional activator GT-2 to the PHYA gene promoter.	Plant J.	18(2)	173-83	1999	_,_,PHYA	Os-PF1, PF1,OsGT-2, GT-2, OsMSL22, MSL22,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA 
37520	8672890	M Ni, K Dehesh, J M Tepperman, P H Quail	GT-2: in vivo transcriptional activation activity and definition of novel twin DNA binding domains with reciprocal target sequence selectivity.	Plant Cell	8(6)	1041-59	1996	PHYA,_	phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsGT-2, GT-2, OsMSL22, MSL22
37521	2255908	K Dehesh, W B Bruce, P H Quail	A trans-acting factor that binds to a GT-motif in a phytochrome gene promoter.	Science	250(4986)	1397-9	1990	_	OsGT-2, GT-2, OsMSL22, MSL22
37522	19616606	Zong J., Yao X., Yin J., Zhang D., Ma H.	Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups.	Gene	447(1)	29-39	2009	RDR2,RDR3,RDR1,SHL2,RDR4	OsRDR2,OsRDR3, OsRDR3a,OsRDR1,shl2, SHL2, sh2, OsRDR6, RDR6,OsRDR4, OsRDR3b
37523	0	Nozoye T., Reiko Nakanishi Ita, Nagasaki S., Takahashi M., Nakanishi H., Mori S., Naoko K Nishikawa	Diurnal Changes in the Expression of Genes That Participate in Phytosiderophore Synthesis in Rice	Soil Sci Plant Nutr	50(7)	1125-1131	2004	NAS1,_,NAAT1,_,DMAS1,DMAS2,NAS2,NAS3	OsNAS1,OsARF1,OsNAAT1,OsRIC1,OsDMAS1,OsDMAS2,OsNAS2,OsNAS3
37524	0	Mitsukawa N, Hayashi H, Yamamoto K, Kidzu K, Konishi R, Masumura T, Tanaka K	Molecular cloning of a novel glutelin cDNA from rice seeds.	Plant Biotechnology	15	205-211	1998	GLU7	Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7
37525	24241455	K Wakasa, J M Widholm	A 5-methyltryptophan resistant rice mutant, MTR1, selected in tissue culture.	Theor. Appl. Genet.	74(1)	49-54	1987	_	Mtr1, MTR1, PDT, ADT
37534	18308333	Chuenchor W., Pengthaisong S., Robert C Robinson, Yuvaniyama J., Oonanant W., David R Bevan, Esen A., Chun-Jung Chen, Opassiri R., Svasti J., James R Ketudat Cairns	Structural insights into rice BGlu1 beta-glucosidase oligosaccharide hydrolysis and transglycosylation.	J. Mol. Biol.	377(4)	1200-15	2008	BGLU7	Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1
37535	0	Ashikawa,I., Hayashi,N., Abe,F., Wu,J. and Matsumoto,T.	Characterization of the rice blast resistance gene Pik cloned from Kanto51	Mol. Breed.	30	485-494	2012	PIK	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
37536	23652799	Bimolata,W., Kumar,A., Sundaram,R.M., Laha,G.S., Qureshi,I.A., Reddy,G.A. and Ghazi,I.A.	Analysis of nucleotide diversity among alleles of the major bacterial blight resistance gene Xa27 in cultivars of rice (Oryza sativa) and its wild relatives	Planta	238(2)	293-305	2013	XA27	Xa27(t), Xa27(t)*, Xa27
37537	23717315	Mustroph,A., Stock,J., Hess,N., Aldous,S., Dreilich,A. and Grimm,B.	Characterization of the phosphofructokinase gene family in rice and its expression under oxygen deficiency stress	Front Plant Sci	4	125	2013	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsPFK05, PFK05, PFK5, OsPFK5,OsPFK01, PFK01, PFK1, OsPFK1,OsPFK02, PFK02, PFK2, OsPFK2,OsPFK03, PFK03, PFK3, OsPFK3,OsPFK07, PFK07, PFK7,OsPFK08, PFK08, PFK8,OsEnS-130, OsPFK09, PFK09, PFK9,OsPFPA2, PFPA2,OsPFK06, PFK06, PFK6,OsPFK10, PFK10,OsPFPA3, PFPA3,OsPFPB, PFPB, OsPFP-B, PFP-B, PFPbeta,OsPFPA1, PFPA1,OsPFPA4, PFPA4,OsPPi-PFK, OsPFK04, PFK04, PFK4
37539	19838050	Rosenblad,M.A., Larsen,N., Samuelsson,T. and Zwieb,C.	Kinship in the SRP RNA family	RNA Biol	6(5)	508-516	2009	SRP RNA,SRP RNA	SRP RNA,SRP RNA
37540	0	Ryoo,N., Eom,J.-S., Kim,H.-B., Thuy Vo,B., Lee,S.-W., Hahn,T.-R. and Jeon,J.-S.	Expression and Functional Analysis of Rice Plastidic Maltose Transporter, OsMEX1	J Korean Soc Appl Biol Chem	56(2)	149-155	2013	MT	OsMT, OsMEX1, MEX1
37541	23715469	Toda,Y., Tanaka,M., Ogawa,D., Kurata,K., Kurotani,K., Habu,Y., Ando,T., Sugimoto,K., Mitsuda,N., Katoh,E., Abe,K., Miyao,A., Hirochika,H., Hattori,T. and Takeda,S.	RICE SALT SENSITIVE3 Forms a Ternary Complex with JAZ and Class-C bHLH Factors and Regulates Jasmonate-Induced Gene Expression and Root Cell Elongation	Plant Cell	25(5)	1709-1725	2013	TIFY11A,_,TIFY11C,_,RSS3,TIFY10C	OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsbHLH094, bHLH094, bHLH94,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsbHLH089, bHLH089, bHLH89,,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
37542	0	Xu,M.R., Huang,L.Y., Zhang,F., Zhu,L.H., Zhou,Y.L. and Li,Z.K.	Genome-Wide Phylogenetic Analysis of Stress-Activated Protein Kinase Genes in Rice (OsSAPKs) and Expression Profiling in Response to Xanthomonas oryzae pv. oryzicola Infection	Plant Mol. Biol. Rep.	31	877-885	2013	SAPK1,SAPK2,SAPK3,SAPK10,SAPK4,SAPK9,SAPK6,SAPK8,SAPK7,SAPK5	OsSAPK1,OsSAPK2,OsSAPK3, REK,OsSAPK10,OsSAPK4,OsSAPK9,OsSAPK6, OSRK1,OsSAPK8,OsSAPK7,OsSAPK5
37543	9375785	X Qin, S Gian?, D Breviario	Molecular cloning of three rice alpha-tubulin isotypes: differential expression in tissues and during flower development.	Biochim. Biophys. Acta	1354(1)	19-23	1997	TUBA1,TUBA3,TID1	OsTubA1, TubA1, OS-TubA3, TubA3,OsTubA3, TubA3, OS-TubA1, TubA1,OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, 
37544	19558411	Choong-Hwan Ryu, Lee S., Lae-Hyeon Cho, Song Lim Kim, Yang-Seok Lee, Sang Chul Choi, Hee Joong Jeong, Yi J., Soon Ju Park, Chang-Deok Han, An G.	OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice.	Plant Cell Environ.	32(10)	1412-27	2009	LFL1,MADS56,MADS50,EF1	OsLFL1, OsSTA29, STA29,OsMADS56, FDRMADS8, RMADS214,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
37545	20459318	Chang-Jie Jiang, Shimono M., Sugano S., Kojima M., Yazawa K., Yoshida R., Inoue H., Hayashi N., Sakakibara H., Takatsuji H.	Abscisic acid interacts antagonistically with salicylic acid signaling pathway in rice-Magnaporthe grisea interaction.	Mol. Plant Microbe Interact.	23(6)	791-8	2010	WRKY45,PR1B,NH1	OsWRKY45,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
37546	18980657	Li H., Xue D., Gao Z., Yan M., Xu W., Xing Z., Huang D., Qian Q., Xue Y.	A putative lipase gene EXTRA GLUME1 regulates both empty-glume fate and spikelet development in rice.	Plant J.	57(4)	593-605	2009	EG1	eg1, GY1
37547	24336200	Jiang L., Liu X., Xiong G., Liu H., Chen F., Wang L., Meng X., Liu G., Yu H., Yuan Y., Yi W., Zhao L., Ma H., He Y., Wu Z., Melcher K., Qian Q., H.EricXu, Wang Y., Li J.	DWARF 53 acts as a repressor of strigolactone signalling in rice	Nature	504	401-405	2013	D53,D3,_,ASP1,D14,HSP101,_,_	D53(D K3), DK3, Dwf34, SMXL6/7/8,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,D53-like,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsWD40-66, TPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2,OsWD40-12, TPR1
37548	19966073	Gebert M., Meschenmoser K., Sona Svidov?, Weghuber J., Schweyen R., Eifler K., Lenz H., Weyand K., Knoop V.	A root-expressed magnesium transporter of the MRS2/MGT gene family in Arabidopsis thaliana allows for growth in low-Mg2+ environments.	Plant Cell	21(12)	4018-30	2009	_,_,_,_,_,_,_,_,_	OsMRS2-6,OsMRS2-7,OsMRS2-3,OsMRS2-8,OsMGT1, OsMRS2-2,OsMRS2-9,OsMRS2-5,OsMGT6, OsMRS2-4,OsMGT, OsMRS2-1
37549	11489171	S Choe, S Fujioka, T Noguchi, S Takatsuto, S Yoshida, K A Feldmann	Overexpression of DWARF4 in the brassinosteroid biosynthetic pathway results in increased vegetative growth and seed yield in Arabidopsis.	Plant J.	26(6)	573-82	2001		
37550	20381393	Wu L., Zhou H., Zhang Q., Zhang J., Ni F., Liu C., Qi Y.	DNA methylation mediated by a microRNA pathway.	Mol. Cell	38(3)	465-75	2010	RDR2,DCL1,AGO1B,DCL3A,AGO4B,AGO1A,AGO16,MIR820A,MIR820B,MIR820C,AGO1C,AGO4A	OsRDR2,Dcl1, OsDCL1, osDCL1, Os-DCL1,OsAGO1b, AGO1b, AGO1-2 ,OsDCL3a,OsAGO4b, AGO4-1 ,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO16, OsAGO6, ZP1,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,OsAGO1c, OsAGO1, AGO1, AGO1c,OsAGO4a, AGO4-2
37551	16668962	M Wada, M Takano, K Kasamo	Nucleotide Sequence of a Complementary DNA Encoding Plasma Membrane H-ATPase from Rice (Oryza sativa L.).	Plant Physiol.	99(2)	794-5	1992	AHA1	OSA1, OsA1, osAHA1, AHA1
37552	11706167	H Yang, Y Matsubayashi, K Nakamura, Y Sakagami	Diversity of Arabidopsis genes encoding precursors for phytosulfokine, a peptide growth factor.	Plant Physiol.	127(3)	842-51	2001	PSK,PSK4	OsPSK, PSK-alpha, PSK-beta,OsPSK4, Psk4
37553	10734215	H Hanai, D Nakayama, H Yang, Y Matsubayashi, Y Hirota, Y Sakagami	Existence of a plant tyrosylprotein sulfotransferase: novel plant enzyme catalyzing tyrosine O-sulfation of preprophytosulfokine variants in vitro.	FEBS Lett.	470(2)	97-101	2000	PSK	OsPSK, PSK-alpha, PSK-beta
37554	2103449	D McElroy, M Rothenberg, K S Reece, R Wu	Characterization of the rice (Oryza sativa) actin gene family.	Plant Mol. Biol.	15(2)	257-68	1990	_,_,_,ACT1	RAc2,RAc7,RAc3,act1, AC1, RAC1, RAc1, ACT11, OsACT1
37555	23985993	Takai T., Adachi S., Taguchi-Shiobara F., Sanoh-Arai Y., Iwasawa N., Yoshinaga S., Hirose S., Taniguchi Y., Yamanouchi U., Wu J., Matsumoto T., Sugimoto K., Kondo K., Ikka T., Ando T., Kono I., Ito S., Shomura A., Ookawa T., Hirasawa T., Yano M., Kondo M., Yamamoto T.	A natural variant of nal1, selected in high-yield rice breeding programs, pleiotropically increases photosynthesis rate.	Sci Rep	3	2149	2013	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4
37556	0	SATO T., L.-H. WU, NAGANO H., KISHIMA Y., SANO Y.	Rice EPSP synthase gene resides 45-kb downstream of the Waxy gene	RGN	16		1999	RPS40,WX1,EPSPS	rps40,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,EPSPs
37557	12723603	Ngampanya B., Sobolewska A., Takeda T., Toyofuku K., Narangajavana J., Ikeda A., Yamaguchi J.	Characterization of rice functional monosaccharide transporter, OsMST5.	Biosci. Biotechnol. Biochem.	67(3)	556-62	2003	MST5	OsMST5
37558	11851910	S Kimura, T Suzuki, Y Yanagawa, T Yamamoto, H Nakagawa, I Tanaka, J Hashimoto, K Sakaguchi	Characterization of plant proliferating cell nuclear antigen (PCNA) and flap endonuclease-1 (FEN-1), and their distribution in mitotic and meiotic cell cycles.	Plant J.	28(6)	643-53	2001	FEN1,_	OsFEN1, OsFEN-1a, FEN-1,OsPCNA, PCNA
37560	18378529	Shan-Guo Yao, Ohmori S., Kimizu M., Yoshida H.	Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development.	Plant Cell Physiol.	49(5)	853-7	2008	SPW1,MADS2,MADS4	SPW1, spw1, MADS16, OsMADS16,OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMADS4, PI1
37561	24120393	Cai J., Yang L., He H.J., Xu T., Liu H.B., Wu Q., Ma Y., Liu Q.H., Nie M.H.	Antioxidant capacity responsible for a hypocholesterolemia is independent of dietary cholesterol in adult rats fed rice protein.	Gene	533(1)	57-66	2014		
37562	24145399	Yang S., Li J., Zhang X., Zhang Q., Huang J., Chen J.Q., Hartl D.L., Tian D.	Rapidly evolving R genes in diverse grass species confer resistance to rice blast disease.	Proc. Natl. Acad. Sci. U.S.A.	110(46)	18572-7	2013		
37563	24122830	Li X., Chang Y., Xin X., Zhu C., Li X., Higgins J.D., Wu C.	Replication Protein A2c Coupled with Replication Protein A1c Regulates Crossover Formation during Meiosis in Rice.	Plant Cell	25(10)	3885-99	2013	RPA1C,RMC1,RAD21-4,RPA2C,PAIR2	RPA1c, OsRPA1c,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsRad21-4, REC8, OsREC8, OsRAD21-4,RPA2c, OsRPA2c,Pair2, OsPAIR2, OsASY1
37564	24065816	Houston K., McKim S.M., Comadran J., Bonar N., Druka I., Uzrek N., Cirillo E., Guzy-Wrobelska J., Collins N.C., Halpin C., Hansson M., Dockter C., Druka A., Waugh R.	Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence.	Proc. Natl. Acad. Sci. U.S.A.	110(41)	16675-80	2013		
37565	24048471	Bretschneider T., Heim J.B., Heine D., Winkler R., Busch B., Kusebauch B., Stehle T., Zocher G., Hertweck C.	Vinylogous chain branching catalysed by a dedicated polyketide synthase module.	Nature	502(7469)	124-8	2013		
37566	24104565	Martis M.M., Zhou R., Haseneyer G., Schmutzer T., Vr?na J., Kubal?kov? M., K?nig S., Kugler K.G., Scholz U., Hackauf B., Korzun V., Sch?n CC., Dolezel J., Bauer E., Mayer K.F., Stein N.	Reticulate evolution of the rye genome.	Plant Cell	25(10)	3685-98	2013		
37567	24170127	Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.	Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.	Plant Cell	25(10)	3743-59	2013	_,MADS56,FTL1,LOG1,SLR1,_,WFP,FC1,PIN1B,DEP1	PCF1, OsPCF1,OsMADS56, FDRMADS8, RMADS214,FTL, FT-L1, OsFTL1, FTL1,LOG1, LOG, Log, log,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,PCF2, OsPCF2,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
37568	24043799	Delmas F., Sankaranarayanan S., Deb S., Widdup E., Bournonville C., Bollier N., Northey J.G., McCourt P., Samuel M.A.	ABI3 controls embryo degreening through Mendel's I locus.	Proc. Natl. Acad. Sci. U.S.A.	110(40)	E3888-94	2013		
37569	24120898	Zhang K.J., Zhu W.C., Rong X., Liu J., Ding X.L., Hong X.Y.	The complete mitochondrial genome sequence of Sogatella furcifera (Horv?th) and a comparative mitogenomic analysis of three predominant rice planthoppers.	Gene	533(1)	100-9	2014		
37570	24127586	Zhu X., Xiong L.	Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice.	Proc. Natl. Acad. Sci. U.S.A.	110(44)	17790-5	2013	_,DWA1,LACS8,LACS7,WSL1,GELP112,ERF3,WDA1,CER1	OsGL1-2,DWA1,LACS8,LACS7,WSL1, FAE', OsFAE1', OsCER6,OsGELP112, WDL1,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsCER1, OsGL1-4, Os CER1
37571	24096344	Jabnoune M., Secco D., Lecampion C., Robaglia C., Shu Q., Poirier Y.	A Rice cis-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness.	Plant Cell	25(10)	4166-82	2013	PHO1;2 CIS-NAT,PHO1;2	OsPHO1;2 cis-NAT, cis-NAT PHO1;2,OsPHO1;2
37572	24035516	Park H.L., Lee S.W., Jung K.H., Hahn T.R., Cho M.H.	Transcriptomic analysis of UV-treated rice leaves reveals UV-induced phytoalexin biosynthetic pathways and their regulatory networks in rice.	Phytochemistry	96	57-71	2013	_,_,_,_,_,_,_,_,_,_,_,_,ASB2,CYP76M8,_,_,_,_,CYP71Z7,WRKY46,NTMC2T6.2,HSFB2B,_,_,_,_,_,_,_,_,CDPK8,_,CYP99A3,CYP99A2,_,CPS2,TDC1,_,_,_,_,_,_,MPK6,ASB1,_,PAL,_,CDPK24,ROMT9,DXS3,CHS,MAPK4,PAL1,MSRMK2,COMTL2,_,_,4CL3	DHQDT/SDH,ADT,TS,TS,CHI,DHFR,DHFR,OMT,,,,OsSK1,OASB2,CYP76M8,OsRab8A3,OsRab11C3,OsTSA, pOsTSA, TSbeta,OsMCS, MCS, IspF, OsIspF,Oscyp71Z7,OsWRKY46, WRKY91, OsWRKY91,OsNTMC2T6.2,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21,OsCMK, CMK, OsIspE, IspE,DHQS, OsDHQS,CM, OsCM,CS, OsCS,DHQDT/SDH, OsDHQDT/SDH, OsDHQDT, OsSDH, DHQDT, SDH, DHQ/SDH-1,OsSK2, SK2,OsC4H ,,OsCDPK8, OsCPK8,IGPS,,CYP99A2,DHFR,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsTDC, TDC2, OsTDC1,CHS, OsPKS02, OsPKS2, PKS02, PKS2,CHS, OsPKS12, PKS12,CRO1, CRT,FLS, 2-ODD17, Os2-ODD17, 2ODD17, Os2ODD17,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2,OsDXR, DXR, OsIspC, IspC,OsMPK6, OsDR6, OsMPK4,OASB1, OsASbeta1, ASbeta1,CHI, OsCHI,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,FLS, 2-ODD2, Os2-ODD2, 2ODD2, Os2ODD2, OsF3H, F3H,OsCDPK24, OsCPK24, OsCDPK14,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,OsDXS, OsDXS3, dxs3,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsCOMTL2,ZRP4, OMT, ASMT, OsASMT1, ASMT1,,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL
37573	24045020	Xia T., Li N., Dumenil J., Li J., Kamenski A., Bevan M.W., Gao F., Li Y.	The Ubiquitin Receptor DA1 Interacts with the E3 Ubiquitin ligase DA2 to Regulate Seed and Organ Size in Arabidopsis.	Plant Cell	25(9)	3347-59	2013	GW2	OsGW2
37574	24003150	Ye M., Song Y., Long J., Wang R., Baerson S.R., Pan Z., Zhu-Salzman K., Xie J., Cai K., Luo S., Zeng R.	Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon.	Proc. Natl. Acad. Sci. U.S.A.	110(38)	E3631-9	2013	WRKY70,_,RBBI3-3,MAPK6,LSI2,LSI1,WRKY53,LSI6,AOS2,MSRMK2	OsWRKY70,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,RBBI3-3, OsBBPI, BBPI,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,Lsi2, SIET1, OsLsi2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsWRKY53, WRKY-53,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
37575	24052276	Alberts B., Beachy R., Baulcombe D., Blobel G., Datta S., Fedoroff N., Kennedy D., Khush G.S., Peacock J., Rees M., Sharp P.	Standing up for GMOs.	Science	341(6152)	1320	2013		
37576	24042130	Lu Y.C., Yang S.N., Zhang J.J., Zhang J.J., Tan L.R., Yang H.	A collection of glycosyltransferases from rice (Oryza sativa) exposed to atrazine.	Gene	531(2)	243-52	2013	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,XYXT1,_,_,_,_,_,UGT703A4,UGT85E2,UGT703A2,_,_,_,_,_,_,_,XAT3,XAT2	,,,,,,,OsGT43E,,,,,,,OsGT43A, GT43A,XAX1, OsXAX1,,OsGT2,OsGT4,OsXXT1, SRH2,,,,,,,,,,,,,,,,OsDGL1,,OsGT5,,OsGT6,RS5, OsRS5,OsXYXT1,,OsIRX9, IRX9, OsGT43C/OsIRX9, OsGT43C,,,OsIRX14, IRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,,,,Osh69,,OsGT43H,OsGT43G,OsGT7,OsIRX9L, OsGT43F/OsIRX9L, OsGT43F,OsGT43I, OsGT43B,OsXAT3,OsXAT2
37577	24035935	Zhao F., Li Q., Weng M., Wang X., Guo B., Wang L., Wang W., Duan D., Wang B.	Cloning of TPS gene from eelgrass species Zostera marina and its functional identification by genetic transformation in rice.	Gene	531(2)	205-11	2013		
37578	24077303	Xu S.	Mapping Quantitative Trait Loci by Controlling Polygenic Background Effects.	Genetics	195(4)	1209-22	2013		
37579	24076974	Luo J., Liu H., Zhou T., Gu B., Huang X., Shangguan Y., Zhu J., Li Y., Zhao Y., Wang Y., Zhao Q., Wang A., Wang Z., Sang T., Wang Z., Han B.	An-1 encodes a basic helix-loop-helix protein that regulates awn development, grain size, and grain number in rice.	Plant Cell	25(9)	3360-76	2013	LOG1,OSH1,AN1,GN1A,LABA1	LOG1, LOG, Log, log,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,LOGL6, OsLOGL6, An-2
37580	24099390	Ren J., Yu Y., Gao F., Zeng L., Lu X., Wu X., Yan W., Ren G.	Application of resistance gene analog markers to analyses of genetic structure and diversity in rice.	Genome	56(7)	377-87	2013		
37581	24023067	Barboza L., Effgen S., Alonso-Blanco C., Kooke R., Keurentjes J.J., Koornneef M., Alc?zar R.	Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley.	Proc. Natl. Acad. Sci. U.S.A.	110(39)	15818-23	2013		
37582	24037269	Wang C., Shi X., Liu L., Li H., Ammiraju J.S., Kudrna D.A., Xiong W., Wang H., Dai Z., Zheng Y., Lai J., Jin W., Messing J., Bennetzen J.L., Wing R.A., Luo M.	Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives.	Genetics	195(3)	723-37	2013		
37583	24218619	Waters A.J., Bilinski P., Eichten S.R., Vaughn M.W., Ross-Ibarra J., Gehring M., Springer N.M.	Comprehensive analysis of imprinted genes in maize reveals allelic variation for imprinting and limited conservation with other species.	Proc. Natl. Acad. Sci. U.S.A.	110(48)	19639-44	2013		
37584	24191062	Zhang T., Talbert P.B., Zhang W., Wu Y., Yang Z., Henikoff J.G., Henikoff S., Jiang J.	The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres.	Proc. Natl. Acad. Sci. U.S.A.	110(50)	E4875-83	2013	DIRS1,CENH3	,CENH3, CenH3
37585	24285788	van Veen H., Mustroph A., Barding G.A., Vergeer-van Eijk M., Welschen-Evertman RA., Pedersen O., Visser E.J., Larive C.K., Pierik R., Bailey-Serres J., Voesenek L.A., Sasidharan R.	Two Rumex Species from Contrasting Hydrological Niches Regulate Flooding Tolerance through Distinct Mechanisms.	Plant Cell	25(11)	4691-707	2013		
37586	24280387	Li T., Chen X., Zhong X., Zhao Y., Liu X., Zhou S., Cheng S., Zhou D.X.	Jumonji C Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice.	Plant Cell	25(11)	4725-36	2013	_,_,JAMYB,_	JMJ705,PR10,OsJAmyb, JAmyb, OsJAMyb ,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13
37587	24259710	Gong L., Chen W., Gao Y., Liu X., Zhang H., Xu C., Yu S., Zhang Q., Luo J.	Genetic analysis of the metabolome exemplified using a rice population.	Proc. Natl. Acad. Sci. U.S.A.	110(50)	20320-5	2013	CYP93G2,_,SPL18,_,_,_,CYP72A1,_	CYP93G2, OsF2H,OsMaT-1,Spl18, OsAT1,OsMaT-2,OsMaT-3,OsMYB55, OsMYB-2,CYP72A1,UGT
37588	24249833	Secco D., Jabnoune M., Walker H., Shou H., Wu P., Poirier Y., Whelan J.	Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery.	Plant Cell	25(11)	4285-304	2013	MIR399B,MIR399C,MIR399D,MIR399I,MIR399A,LTN1,MIR399J	OsmiR399b, osa-MIR399b, miR399b,OsmiR399c, osa-MIR399c, miR399c,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,OsmiR399i, osa-MIR399i, miR399i,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j
37589	23994683	Devi S.J., Madhav M.S., Kumar G.R., Goel A.K., Umakanth B., Jahnavi B., Viraktamath B.C.	Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.	Gene	531(1)	15-22	2013	MIR167C,MIR169E,MIR169g,MIR167A,MIR167B,MIR171D,MIR171E,MIR171F,MIR171C,MIR167F,MIR167I,MIR168B,MIR167G,MIR167J,MIR169F,MIR166M,MIR166K,MIR397B,MIR408,MIR167H,MIR319A,MIR169H,MIR156K,MIR393,MIR397A,MIR171,MIR167D	miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,miR169e, osa-miR169e, osa-MIR169e,MIR-169g, osa-MIR169g,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p,miR167b, osa-miR167b,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR171e, osa-miR171eosa-miR171e-3p osa-miR171e-5p,miR171f, osa-miR171fosa-miR171f-3p osa-miR171f-5p,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR168b, osa-miR168b, osa-MIR168b,miR167g, osa-miR167g, osa-miRNA167g ,miR167j, osa-miR167j, osa-MIR167j,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR166m, osa-miR166m,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,miR169h, osa-miR169h, osa-MIR169h,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p
37590	23994682	Zhang X., Rerksiri W., Liu A., Zhou X., Xiong H., Xiang J., Chen X., Xiong X.	Transcriptome profile reveals heat response mechanism at molecular and metabolic levels in rice flag leaf.	Gene	530(2)	185-92	2013	_,BZIP4,RISBZ5,_,_,BZIP24,PSY2,_,RPT5B,4CL4,_,RISBZ1,_,_,ALDH7,4CL5,HXK7,PGK4,BZIP60,BZIP50,_,_,WRKY24	HMGR II, Hmg2, HMGR2, HMGR 2, OsHMGR2,OsbZIP04, OsbZIP4,OsbZIP52,R2R3-MYB,,OsbZIP24, OsFD3, FD3,PSY2, OsPSY2,MDH,OsRpt5b, Rpt5b,Os4CL4,PFP, OscPGM, cPGM,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsMYB30, MYB30, OsMYB5P, MYB5P,OsBCH2, BCH2, OsHYD1, HYD1,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6 ,Os4CL5, 4CL3, Os4CL3,OsHXK7,PGK, OsPGK4,OsbZIP60, bZIP60,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsMaT-2,OsWRKY24
37591	24033867	Cheng X., Wu Y., Guo J., Du B., Chen R., Zhu L., He G.	A rice lectin receptor-like kinase that is involved in innate immune responses also contributes to seed germination.	Plant J.	76(4)	687-98	2013	_,AMY1C,ADF4,AMY3D,AMY1A,PR1A,CHS,_	OslecRK,Amy1A/C*(RAmy1A/C), alpha Amy10, Amy1C, RAmy1A/C, Amy1A/C*, Amy3, RAmy1C, OsAmy1C,OsADF4, OsADF,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
37592	24153418	Ohta M., Wakasa Y., Takahashi H., Hayashi S., Kudo K., Takaiwa F.	Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.	J. Exp. Bot.	64(18)	5429-41	2013	_,_,BZIP39,_,_,_,_,_,BZIP60	OsERdj3A, TMS1,OsDjB6, OsERdj3B,OsbZIP39, bZIP39,OsDjC16, OsP58A,OsDjC79, OsERdj7,OsDjC15, OsP58B,OsDjC43, OsERdj2,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsbZIP60, bZIP60
37593	24205207	Zhang X.Y., Nie Z.H., Wang W.J., Leung D.W., Xu da G., Chen B.L., Chen Z., Zeng L.X., Liu E.E.	Relationship between disease resistance and Rice Oxalate Oxidases in Transgenic Rice.	PLoS ONE	8(10)	e78348	2013	OXO2,OXO1,OXO3,OXO4	Osoxo4, OsOxO2, OsGLP3-4, GLP3-4,OsOxO1, OsGLP3-3, GLP3-3,OsOxO3, OsGLP3-5, GLP3-5,OsOxO4, OsGLP3-6, GLP3-6
37594	24215658	Lim S.D., Lee C., Jang C.S.	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis.	Plant Cell Environ.			2013	_,_,_,_,_,_,_,RBBI3-1,_	OsXYLA1,OsCYP450,OsMASP1,OsCP12,OsRP1,OsCTR1,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4
37595	24124527	Ma N., Wang Y., Qiu S., Kang Z., Che S., Wang G., Huang J.	Overexpression of OsEXPA8, a Root-Specific Gene, Improves Rice Growth and root system Architecture by Facilitating Cell Extension.	PLoS ONE	8(10)	e75997	2013	EXPA8	OsEXPA8, OsEXP8, osaEXPa1.17
37596	24103920	Hwang H., Yoon J.Y., Cho H., Kim B.G.	OsKAT2 is the prevailing functional inward rectifier potassium channels in rice guard cell.	Plant Signal Behav	8(12)	e26643	2013	KAT2	OsKAT2
37597	24128296	Huda K.M., Banu M.S., Garg B., Tula S., Tuteja R., Tuteja N.	OsACA6, a P-type IIB Ca(2+) ATPase promotes salinity and drought stress tolerance in tobacco by ROS scavenging and enhancing the expression of stress-responsive genes.	Plant J.	76(6)	997-1015	2013	ACA11	osACA11, OsACA6, OsACA5, OsPM4ATP8
37598	24034348	Long T., Guo D., He D., Shen W., Li X.	The tRNA 3'-end Processing Enzyme tRNase Z2 Contributes to Chloroplast Biogenesis in Rice.	J Integr Plant Biol	55(11)	1104-18	2013	TRZ2	OsaTRZ2, OsTRZ2
37599	24237159	Liu H., Ma Y., Chen N., Guo S., Liu H., Guo X., Chong K., Xu Y.	Overexpression of stress-inducible OsBURP16, the beta-subunit of polygalacturonase 1, decreases pectin contents and cell adhesion, and increases abiotic stress sensitivity in rice.	Plant Cell Environ.			2013	_,TPS8,TPP1	OsRD22, RD22, OsBURP16, BURP16,OsTPS8, OsTPS1, TPS1,OsTPP1, OsTPS
37600	24096889	Ubaidillah M., Kim K.A., Kim Y.H., Lee I.J., Yun B.W., Kim D.H., Loake G.J., Kim K.M.	Identification of a drought-induced rice gene, OsSAP, that suppresses Bax-induced cell death in yeast.	Mol. Biol. Rep.	40(11)	6113-21	2013	_	OsSAP
37601	24143807	Chen L.J., Wuriyanghan H., Zhang Y.Q., Duan K.X., Chen H.W., Li Q.T., Lu X., He S.J., Ma B., Zhang W.K., Lin Q., Chen S.Y., Zhang J.S.	An S-domain receptor-like kinase OsSIK2 confers abiotic stress tolerance and delays dark-induced leaf senescence in rice.	Plant Physiol.	163(4)	1752-65	2013	_,SIK2,_,_,_,_,PR10B,DREB1E,PR5,DREB1B	,OsSIK2, YK14,OsPR1, OsPR1a, PR1a, PR1,prx60, POX-1,OsHPPD, HPPD, Osl30, l30,prx109, POX-2,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b ,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OsPR5, Pir2, PR-5, PR5-1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C
37602	24098302	Yoshida K., Sakamoto S., Kawai T., Kobayashi Y., Sato K., Ichinose Y., Yaoi K., Akiyoshi-Endo M., Sato H., Takamizo T., Ohme-Takagi M., Mitsuda N.	Engineering the Oryza sativa cell wall with rice NAC transcription factors regulating secondary wall formation.	Front Plant Sci	4	383	2013	NAC18,NAC82,NAC90,NAC31,_,NAC29,NAC56	ONAC018, ONAC18, OsSWN4,OsSWN6, ONAC082, ONAC82,OsSWN7, ONAC090, ONAC90,ONAC031, ONAC31, OsSWN3,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2 ,ONAC056, ONAC56, OsSWN5
37603	24068795	Tanaka N., Uraguchi S., Saito A., Kajikawa M., Kasai K., Sato Y., Nagamura Y., Fujiwara T.	Roles of pollen-Specific Boron Efflux Transporter, OsBOR4, in the Rice Fertilization Process.	Plant Cell Physiol.	54(12)	2011-9	2013	BOR4	OsBOR4
37604	24085307	P?rez-D?az J., Wu T.M., P?rez-D?az R., Ru?z-Lara S., Hong C.Y., Casaretto J.A.	Organ- and stress-specific expression of the ASR genes in rice.	Plant Cell Rep.	33(1)	61-73	2013	_,ASR2,ASR3,ASR4,ASR1,ASR5	OsASR2, OsASR4, Asr4, ASR2,OsAsr2, OsASR4, OsASR6,Asr3, OsASR5, OsASR1, Asr1,Asr4, OsASR6, OsASR2, Asr2,OsAsr1, OsASR3, ASR3, Asr3,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
37605	24268167	Zheng J., Wang Y., He Y., Zhou J., Li Y., Liu Q., Xie X.	Overexpression of an S-like ribonuclease gene, OsRNS4, confers enhanced tolerance to high salinity and hyposensitivity to phytochrome-mediated light signals in rice.	Plant Sci.	214	99-105	2014	RNS4	OsRNS4, OsRRP, RNaseDIS
37606	24144792	Chen Y., Xu Y., Luo W., Li W., Chen N., Zhang D., Chong K.	The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects leaf senescence and seed size in rice.	Plant Physiol.	163(4)	1673-85	2013	_,_,_	OsFBK12, OsFbox130, Os_F0642,OSK1, SKP1, OsSKP1,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS
37607	24089432	Hirano K., Kondo M., Aya K., Miyao A., Sato Y., Antonio B.A., Namiki N., Nagamura Y., Matsuoka M.	Identification of transcription factors involved in rice secondary cell wall formation.	Plant Cell Physiol.	54(11)	1791-802	2013	_,_,_,CEF1,_,GH2,_	OsBLH6,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L,OsMYB42/85, MYB42/85,gh2, CAD2, CAD, OsCAD2, GH2 ,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1
37608	24152437	Tan C.M., Chen R.J., Zhang J.H., Gao X.L., Li L.H., Wang P.R., Deng X.J., Xu Z.J.	OsPOP5, A prolyl oligopeptidase Family Gene from Rice Confers Abiotic Stress Tolerance in Escherichia coli.	Int J Mol Sci	14(10)	20204-19	2013	_	OsPOP5, POP5
37610	24034337	Qi Z., Xiong L.	Characterization of a Purine Permease Family Gene OsPUP7 Involved in Growth and Development Control in Rice.	J Integr Plant Biol	55(11)	1119-35	2013	PUP1,PUP2,PUP3,PUP5,PUP6,PUP8,PUP10,PUP11,PUP12,PUP13,PUP4,PUP7	OsPUP1,OsPUP2,OsPUP3,OsPUP5,OsPUP6,OsPUP8,OsPUP10,OsPUP11,OsPUP12,OsPUP13,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsPUP7
37611	24157209	Sripinyowanich S., Chamnanmanoontham N., Udomchalothorn T., Maneeprasopsuk S., Santawee P., Buaboocha T., Qu L.J., Gu H., Chadchawan S.	Overexpression of a partial fragment of the salt-responsive gene OsNUC1 enhances salt adaptation in transgenic Arabidopsis thaliana and rice (Oryza sativa L.) during salt stress.	Plant Sci.	213	67-78	2013	NUC1	OsNUC1, OsNUC1-S, OsNUC1-L
37612	24042572	Zhao H.J., Cui H.R., Xu X.H., Tan Y.Y., Fu J.J., Liu G.Z., Poirier Y., Shu Q.Y.	Characterization of OsMIK in a rice mutant with reduced phytate content reveals an insertion of a rearranged retrotransposon.	Theor. Appl. Genet.	126(12)	3009-20	2013	_,MRP13,INO1,LPA1,ITPK3	OsMIK, LPA,OsABCC13, OsMRP13, OsMRP5,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1
37613	24028154	Zhou Y., Huang W., Liu L., Chen T., Zhou F., Lin Y.	Identification and functional characterization of a rice NAC gene involved in the regulation of leaf senescence.	BMC Plant Biol.	13	132	2013	OG1,AOC,NAC58,_,AOS2	OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsAOC, AOC1, OsAOC1, HB, CPM2,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsAOS2, CYP74A2, OsAOS, OsAOS1
37614	24111723	Wang S., Zhang S., Sun C., Xu Y., Chen Y., Yu C., Qian Q., Jiang D.A., Qi Y.	Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).	New Phytol.	201(1)	91-103	2014	ARF8,_,PI1,_,ARF6B,MIR399J,miR827,_,PHR2,_,_,_,LTN1,IPS1	OsARF8, OsARF12, ARF12,OsMYB2P-1,OsIPS2, IPS2, OsPI1,OsSPX-MFS2, SPX-MFS2 ,OsARF6b, OsARF25, ARF25,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsSPX-MFS1, SPX-MFS1,OsPHR2, Os-PHR2,OsTIR1, TIR1, OsFbox248, Os_F0717,OsSPX1, SPX1,OsSQD2, SQD2, SQD2.2, OsSQD2.2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsIPS1, IPS1
37615	24078098	Ham D.J., Moon J.C., Hwang S.G., Jang C.S.	Molecular characterization of two small heat shock protein genes in rice: their expression patterns, localizations, networks, and heterogeneous overexpressions.	Mol. Biol. Rep.			2013	HSP16.9B,HSP18.0	Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
37616	24062085	Nakashima K., Jan A., Todaka D., Maruyama K., Goto S., Shinozaki K., Yamaguchi-Shinozaki K.	Comparative functional analysis of six drought-responsive promoters in transgenic rice.	Planta	239(1)	47-60	2014	HOX24,DHN1,LEA3-1,WSI18,RAB16B,NAC6	Oshox24, OsHox24, OsSLI1,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,rab21, OsLEA28, OsRAB16D, OsRAB16b,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
37617	24064929	Deng F., Yamaji N., Xia J., Ma J.F.	A Member of the Heavy Metal P-type ATPase OsHMA5 Is Involved in Xylem Loading of Copper in Rice.	Plant Physiol.	163(3)	1353-62	2013	HMA5	OsHMA8, osHMA5, HMA8
37618	24014866	Kano A., Fukumoto T., Ohtani K., Yoshihara A., Ohara T., Tajima S., Izumori K., Tanaka K., Ohkouchi T., Ishida Y., Nishizawa Y., Ichimura K., Tada Y., Gomi K., Akimitsu K.	The rare sugar D-allose acts as a triggering molecule of rice defence via ROS generation.	J. Exp. Bot.	64(16)	4939-51	2013	_,_,_,HXK6,_,HXK5,RBOHD,_,_,RBOHC,RBOHB	OsG6PDH1,OsG6PDH4,OsG6PDH3, OsG6PDH2,OsHXK6,OsG6PDH5, G6PDH5,OsHXK5,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4,rbohA, OsrbohA, Os rbohA, OsRbohA, OsRboh2,OsG6PDH2, OsG6PDH1, OsG6PDH,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB 
37619	24052265	Jamshidiha M., Ishida H., Sutherland C., Gifford J.L., Walsh M.P., Vogel H.J.	Structural Analysis of a Calmodulin Variant from Rice: THE C-TERMINAL EXTENSION OF OsCaM61 REGULATES ITS CALCIUM BINDING AND ENZYME ACTIVATION PROPERTIES.	J. Biol. Chem.	288(44)	32036-49	2013	CAM61	CaM61, OsCaM61, OsCML1, OsCML1d
37620	24033451	Svyatyna K., Jikumaru Y., Brendel R., Reichelt M., Mith?fer A., Takano M., Kamiya Y., Nick P., Riemann M.	Light induces jasmonate-isoleucine conjugation via OsJAR1-dependent and -independent pathways in rice.	Plant Cell Environ.	37(4)	827-39	2014	TIFY10C,AOC,JAR2,JAR1	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsAOC, AOC1, OsAOC1, HB, CPM2,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
37621	23938390	Singh S., Giri M.K., Singh P.K., Siddiqui A., Nandi A.K.	Down-regulation of OsSAG12-1 results in enhanced senescence and pathogen-induced cell death in transgenic rice plants.	J. Biosci.	38(3)	583-92	2013	_,_,_,_,_,_,_,CP1,_,_	,,,,,,OsSAG12, SAG12,OsCP1, Os CP1,REP-1, OsSAG12-1, SAG12-1, OsEnS-21,CP, OsSAG12-2, SAG12-2 
37622	24014863	Yang A., Li Y., Xu Y., Zhang W.H.	A receptor-like protein RMC is involved in regulation of iron acquisition in rice.	J. Exp. Bot.	64(16)	5009-20	2013	NAAT1,RMC,_,IRT1,YSL15,DMAS1,NAS1,NAS2	OsNAAT1,OsRMC, OsRLK, OsDUF26, DUF26,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsIRT1,OsYSL15, OsYs7,OsDMAS1,OsNAS1,OsNAS2
37623	24020752	Li S., Zhou B., Peng X., Kuang Q., Huang X., Yao J., Du B., Sun M.X.	OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.	New Phytol.	201(1)	66-79	2014	QHB,FIE1,FIE2	OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsFIE2, FIE, OsWD40-153
37624	24268160	Lin D.G., Chou S.Y., Wang A.Z., Wang Y.W., Kuo S.M., Lai C.C., Chen L.J., Wang C.S.	A proteomic study of rice cultivar TNG67 and its high aroma mutant SA0420.	Plant Sci.	214	20-8	2014	_,_,_,_,_,_,_,_	OsGAPDH1,OsGAPDHA, OsGAPDH4,OsGAPDH2,OsGAPDH5,OsGAPDH6,OsGAPDH7,OsGAPDH8, NP-GAPDH,GADPH, OsGAPDHB, GAPDHB
37625	24006427	Wang Q., Zhang W., Yin Z., Wen C.K.	Rice CONSTITUTIVE TRIPLE-RESPONSE2 is involved in the ethylene-receptor signalling and regulation of various aspects of rice growth and development.	J. Exp. Bot.	64(16)	4863-75	2013	_,_,_	OsCTR1, CTR1,OsCTR2, CTR2,OsCTR3, CTR3
37626	24265852	Trivedi D.K., Ansari M.W., Tuteja N.	Multiple abiotic stress responsive rice cyclophilin: (OsCYP-25) mediates a wide range of cellular responses.	Commun Integr Biol	6(5)	e25260	2013	CYP57,CYP27,CYP20,CYP7,CYP17,CYP19-3,CYP18-1,CYP18-4,CYP21-1,CYP22,CYP23,CYP26-2,CYP28,CYP40A,CYP40B,CYP59A,CYP59B,CYP63,CYP65,CYP71,CYP95,CYP18-2,CYP20-1,CYP21-4,CYP20-3,CYP19-4,LRT2,CYP20-2	OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b,OsCYP-27,OsCYP-20,OsCYP-7,OsCYP17, OsCYP-4,OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b,OsCYP18-1, OsCYP-12,OsCYP18-4, OsCYP-26, OsCYP18-3,OsCYP21-1, OsCYP-24,OsCYP22, OsCYP-10,OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c,OsCYP26-2, OsCYP-1, OsCYP26-1,OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d,OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b,OsCYP40b, OsCYP-8, OsCYP40-2,OsCYP59a, OsCYP-14, OsCYP59-1,OsCYP59b, OsCYP-15, OsCYP59-2,OsCYP63, OsCYP-18,OsCYP65, OsCYP-9,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b,OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c,OsCYP20-3, OsCYP-5,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsCYP20-2, OsCYP-11
37627	24019919	Cheong H., Kim C.Y., Jeon J.S., Lee B.M., Sun Moon J., Hwang I.	Xanthomonas oryzae pv. oryzae type III effector XopN targets OsVOZ2 and a putative thiamine synthase as a virulence factor in rice.	PLoS ONE	8(9)	e73346	2013	_,DR8	OsVOZ2,OsDR8, OsXNP, FOXRED1
37628	24254313	Morita K., Hatanaka T., Misoo S., Fukayama H.	Unusual Small Subunit, OsRbcS1, that is not Expressed in Photosynthetic Cells Alters the Catalytic Properties of Rubisco in Rice.	Plant Physiol.	164(1)	69-79	2014	_,_,_,_,RBCS	RbcS1, OsRBCS1, OsRbcS1,RbcS, RbcS4, OsRBCS4, OsRbcS4,RbcS5, OsRBCS5, OsRbcS5,RbcS3, OsRBCS3, OsRbcS3, rbcS ,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
37629	24223786	Sumiyoshi M., Nakamura A., Nakamura H., Hakata M., Ichikawa H., Hirochika H., Ishii T., Satoh S., Iwai H.	Increase in cellulose accumulation and improvement of saccharification by overexpression of arabinofuranosidase in rice.	PLoS ONE	8(11)	e78269	2013	_,_,_,_,_	OsARAF1,OsARAF2,OsARAF4,OsARAF5,OsARAF3
37630	24163402	Kunihiro S., Saito T., Matsuda T., Inoue M., Kuramata M., Taguchi-Shiobara F., Youssefian S., Berberich T., Kusano T.	Rice DEP1, encoding a highly cysteine-rich G protein gamma subunit, confers cadmium tolerance on yeast cells and plants.	J. Exp. Bot.	64(14)	4517-27	2013	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
37631	24189206	Nuruzzaman M., Sharoni A.M., Satoh K., Kumar A., Leung H., Kikuchi S.	Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation.	J. Plant Physiol.	171(1)	2-13	2014	WRKY68,WRKY84,WRKY96,WRKY105,WRKY29,WRKY43,WRKY102,WRKY3,WRKY75,WRKY115,WRKY9,WRKY42,WRKY11	OsWRKY68,OsWRKY84,OsWRKY96,OsWRKY105,OsWRKY29,OsWRKY43,OsWRKY102,OsWRKY3 ,OsWRKY75,OsWRKY115,OsWRKY9,OsWRKY42, WRKY-42,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2
37632	24253678	Kobayashi T., Nagasaka S., Senoura T., Itai R.N., Nakanishi H., Nishizawa N.K.	Iron-binding haemerythrin RING ubiquitin ligases regulate plant iron responses and accumulation.	Nat Commun	4	2792	2013	_,_,_	OsHORZ1,OsHRZ1, HRZ1,OsRFPH2-24, OsHRZ2, HRZ2
37633	24247850	Luo C., Guo C., Wang W., Wang L., Chen L.	Overexpression of a new stress-repressive gene OsDSR2 encoding a protein with a DUF966 domain increases salt and simulated drought stress sensitivities and reduces ABA sensitivity in rice.	Plant Cell Rep.	33(2)	323-36	2014	P5CS,_,_,_,_,_,_,_,_,BZIP23,RAB16C,NCED3,LEA3-1	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDSR2,OsDSR1,OsDSR3,OsDSR4,OsDSR5,OsDSR6,OsDSR7,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,rab21, OsLEA27, rab16C,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
37634	24282069	Chen Y., Sun A., Wang M., Zhu Z., Ouwerkerk P.B.	Functions of the CCCH type zinc finger protein OsGZF1 in regulation of the seed storage protein GluB-1 from rice.	Plant Mol. Biol.	84(6)	621-34	2014	_,RISBZ1,GLUB1	OsGZF1,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,GluB1, GluB1-A, GluB-1, OsGluB1
37635	24251791	Nozoye T., Nagasaka S., Bashir K., Takahashi M., Kobayashi T., Nakanishi H., Nishizawa N.K.	Nicotianamine synthase 2 localizes to the vesicles of iron-deficient rice roots, and its mutation in the YXXphi or LL motif causes the disruption of vesicle formation or movement in rice.	Plant J.			2013	NAS2	OsNAS2
37636	24258242	Ding C., You J., Chen L., Wang S., Ding Y.	Nitrogen fertilizer increases spikelet number per panicle by enhancing cytokinin synthesis in rice.	Plant Cell Rep.	33(2)	363-71	2014	IPT5,IPT8,IPT1,IPT2,IPT4,IPT7,IPT3	OsIPT5,OsIPT8,OsIPT1,OsIPT2,OsIPT4,OsIPT7,OsIPT3
37637	24279300	Zhou J., Liu Q., Zhang F., Wang Y., Zhang S., Cheng H., Yan L., Li L., Chen F., Xie X.	Overexpression of OsPIL15, a Phytochrome interacting factor-like protein gene, represses etiolated seedling growth in rice.	J Integr Plant Biol			2013	PIL15	OsPIL15, OsbHLH105, PIF3, OsPIF3
37638	24286292	Singh A., Kanwar P., Yadav A.K., Mishra M., Jha S.K., Baranwal V., Pandey A., Kapoor S., Tyagi A.K., Pandey G.K.	Genome-wide expressional and functional analysis of calcium transport elements during abiotic stress and development in rice.	FEBS J.	281(3)	894-915	2014	_,_,_,_,_,_,_,_,_,_,ACA8,ANN3,_,CNGC3,ACA4,ANN1,CNGC14,CNGC13,CNGC15,CNGC9,ANN6,ANN5,ANN7,ANN8,ANN9,ANN10,CNGC10,CNGC4,ANN2,CNGC11,ANN4,_,CNGC12,ECA1,CNGC6,CNGC17,ACA5,CNGC1,_,_,_,ACA2,ACA9,ACA11,ACA7,ACA3,CAX7,ECA2,TPC1,CNGC5,CNGC2,_,_,_,_,_,GLR3.1,_,_,_,ACA1,CNGC8,_,CNGC16,ACA6,CAX1B,CAX1C,CAX3,CCX1,CCX4,CAX8,_,_,_,_,CAX1A,CCX3,_,CAX2,CDT1,CNGC7	NCKX1,OsGLR3.7,OsGLR3.8,OsGLR4.1,OsGLR4.2,OsGLR4.3,OsGLR4.4,OsGLR4.5,OsGLR4.6,OsGLR4.8,osACA8, OsACA7,OsANN3,OsGLR4.7,OsCNGC3, OsCNGC7 ,osACA4, OsACA8, OsACA4,OsANN1,OsCNGC14, OsCNGC3,OsCNGC13,OsCNGC15, OsCNGC9 ,OsCNGC9, OsCNGC16 ,OsANN6,OsANN5,OsANN7,OsANN8,OsANN9,OsANN10,OsCNGC10, OsCNGC11 ,OsCNGC4, OsCNGC12 ,OsANN2, OsANN1, ANN1,OsCNGC11, OsCNGC13, CNGC13, SSS1-D ,OsANN4,OsGLR3.4, GLR3.4,OsCNGC12, OsCNGC2 ,osECA1, OsECA1,OsCNGC6, OsCNGC4, OsSTA107,OsCNGC17, OsCNGC5, OsSTA282,osACA5, OsACA9, OsACA5, OsPM12ATP4,OsCNGC1, OsCNGC15, CNGC15,OsGLR3.5, GLR3.5, OsGLR3.3, GLR3.3,OsGLR1.1, GLR1.1, OsGLR1.2, GLR1.2,OsGLR4.9, GLR4.9, OsGLR1.3, GLR1.3,osACA2, OsACA10, OsPM12ATP,osACA9, OsACA2, OsPM2ATP9,osACA11, OsACA6, OsACA5, OsPM4ATP8,osACA7, OsACA6, OsACA7, OsPM5ATP4 ,osACA3, OsACA4, OsPM3ATPB,OsCAX7, OsNCX12, NCX12, OsNaCa11exA ,OsECA2, OsER3ATP3 ,OsTPC1, Tpc1, OsCC1, OsCL1 pore,OsCNGC5, OsCNGC10 ,OsCNGC2, OsCNGC1 ,OsGLR2.2, GLR2.2, OsGLR2.1, GLR2.1,OsGLR1.2, GLR1.2, OsGLR1.4, GLR1.4,OsGLR2.1, GLR2.1, OsGLR2.2, GLR2.2,OsGLR2.4, GLR2.4,OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2,OsGLR3.2, GLR3.2, OsGLR3.1,OsGLR2.3, GLR2.3,OsGLR3.6, GLR3.6, OsGLR3.4, GLR3.4,OsGLR3.3, GLR3.3, OsGLR3.5, GLR3.5,osACA1, OsACA1, OsACA3, OsPM3ATP2,OsCNGC8, OsCNGC6, OsCNGC9,OsGLR1.3, GLR1.3, OsGLR1.1, GLR1.1,OsCNGC16, OsCNGC8, OsSTA273,osACA6, OsACA1, OsACA6, OsPM1ATPaseII,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsCCX1, OsNCX6, NCX6,OsCCX4, OsNCX15, NCX15,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1,OsMHX1, MHX1, OsMHX2, MHX2,OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1,OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsCCX3, OsNCX11, NCX11,CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsCNGC7, OsCNGC14 
37639	24103067	Nath K., Poudyal R.S., Eom J.S., Park Y.S., Zulfugarov I.S., Mishra S.R., Tovuu A., Ryoo N., Yoon H.S., Nam H.G., An G., Jeon J.S., Lee C.H.	Loss-of-function of OsSTN8 suppresses the photosystem?II core protein phosphorylation and interferes with the photosystem?II repair mechanism in rice (Oryza sativa).	Plant J.	76(4)	675-86	2013	STN8,STN7	OsSTN8,OsSTN7
37640	24212861	De Kochko,A., Kiefer,M.C., Cordesse,F., Reddy,A.S. and Delseny,M.	Distribution and organization of a tandemly repeated 352-bp sequence in the oryzae family	Theor. Appl. Genet.	82(1)	57-64	1991		
37641	22730405	Hua,D., Wang,C., He,J., Liao,H., Duan,Y., Zhu,Z., Guo,Y., Chen,Z. and Gong,Z.	A plasma membrane receptor kinase, GHR1, mediates abscisic acid- and hydrogen peroxide-regulated stomatal movement in Arabidopsis	Plant Cell	24(6)	2546-2561	2012		
37642	24058148	Kamada-Nobusada,T., Makita,N., Kojima,M. and Sakakibara,H.	Nitrogen-dependent regulation of de novo cytokinin biosynthesis in rice: the role of glutamine metabolism as an additional signal	Plant Cell Physiol.	54(11)	1881-1893	2013	IPT3,IPT8,IPT4,IPT7,IPT1,IPT5,IPT2	OsIPT3,OsIPT8,OsIPT4,OsIPT7,OsIPT1,OsIPT5,OsIPT2
37643	24240868	Li,S., Li,W., Huang,B., Cao,X., Zhou,X., Ye,S., Li,C., Gao,F., Zou,T., Xie,K., Ren,Y., Ai,P., Tang,Y., Li,X., Deng,Q., Wang,S., Zheng,A., Zhu,J., Liu,H., Wang,L. and Li,P.	Natural variation in PTB1 regulates rice seed setting rate by controlling pollen tube growth	Nat Commun	4	2793	2013	PTB1	
37644	24272791	Masumura,T., Shibata,D., Hibino,T., Kato,T., Kawabe,K., Takeba,G., Tanaka,K. and Fujii,S.	cDNA cloning of an mRNA encoding a sulfur-rich 10 kDa prolamin polypeptide in rice seeds	Plant Mol. Biol.	12(2)	123-130	1989	_	Prol-01, CysR10, crP10, pro10.1
37645	24169660	Nakazono,N., Kanno,A., Tsutsumi,N. and Hirai,A.	Homologous recombination mediated by two palindromic repeated sequences in the mitochondrial genome of Oryza	Theor. Appl. Genet.	91(1)	1-8	1995		
37646	23852329	Okazaki,M., Kazama,T., Murata,H., Motomura,K. and Toriyama,K.	Whole Mitochondrial Genome Sequencing and Transcriptional Analysis to Uncover an RT102-Type Cytoplasmic Male Sterility-Associated Candidate Gene Derived from Oryza rufipogon	Plant Cell Physiol.	54(9)	1560-1568	2013		
37647	23944999	Orjuela,J., Thiemele,D.E., Kolade,O., Cheron,S., Ghesquiere,A. and Albar,L.	A recessive resistance to Rice yellow mottle virus is associated with a rice homolog of the CPR5 gene, a regulator of active defence mechanisms	Mol. Plant Microbe Interact.	26(12)	1455-63	2013	RYMV2	OsCPR5-1, CPR5-1
37649	23681551	Sarwat,M. and Naqvi,A.R.	Heterologous expression of rice calnexin (OsCNX) confers drought tolerance in Nicotiana tabacum	Mol. Biol. Rep.	40(9)	5451-5464	2013	CNX	OsCNX, OsCNX1, CNX1
37650	0	Subudhi,P.K., Magpantay,G.B. and Karan,R.	A retrotransposon-based probe for fingerprinting and evolutionary studies in rice (Oryza sativa)	Genet. Resour. Crop Evol.	60(4)	1263-1273	2013		
37651	23859433	Vigueira,C.C., Li,W. and Olsen,K.M.	The role of Bh4 in parallel evolution of hull colour in domesticated and weedy rice	J. Evol. Biol.	26(8)	1738-1749	2013	BH4	Bh4, OsATL14, ATL14
37652	24148990	Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.	Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions	Mol. Phylogenet. Evol.	70	348-361	2014	_,_,BP73,_,GSTF3,SAP1,DCL1,_,BAD1,OSNOP,EMF2A,RFL,TERT,_,CRL1,RAG,RAFTIN1,_,_,_,FON1,MOC1,GAMYB,AOS1,_,GW2,DWARF4,BWMK1,ACS1,LOX-L2,APX2,SPL7,NHX1,_,SPK,SLR1,EF1,DL,GLN1;1,_,TUB3,PAIR1,_,_,_,_,_,_,CK1,RYMV1,_,SPL11,RAC1,WOX1	OsSERL5, OsBAK1-4, SERK1,Ord,BP-73, OsBP-73, Riaa1, Os-BP-73,OsMUS81, OsMUS81alpha, OsMUS81beta, ERCC4,OsGSTF3, gstf3,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,Dcl1, OsDCL1, osDCL1, Os-DCL1,OsWD40-32, OsFY, FY,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,Osnop, nop,OsEMF2a, OsEMF2, EMF2,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,OsTERT,ATL3I, OsHIGD1, HIGD1 ,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,CCR1, OsCCR1, OsCCR12, CCR12 ,AGM1,OsHyPRP03, HyP/GRP03, OsHyPRP3, HyP/GRP3, LTP1,OsFON1, fon1, OsRLCK219, RLCK219,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsPCNA, PCNA,OsGW2,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,ACC1*, OsACS1, Os-ACS1, ACC1,OsLOX-L2, LOX1.1, LOX L-2, LOX-2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsNHX1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,DL, dl(lop), lop, dl, dl1,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsTUB3, TUBB3, RTUB-2,Pair1,OsDREPP1, DREPP1, RS1,OsGPCR, GPCR,RbH,Arf75,Dad,Amt,OsCK1, CIPK31, OsCIPK31, Os-CIPK3,Rymv1, eIF(iso)4G,BEL1, OsBEL, BEL,spl11, spl11*, OsPUB11, PUB11,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1
37653	14605232	Riemann M., Muller A., Korte A., Furuya M., Elmar W Weiler, Nick P.	Impaired induction of the jasmonate pathway in the rice mutant hebiba.	Plant Physiol.	133(4)	1820-30	2003	AOC,OPR1	OsAOC, AOC1, OsAOC1, HB, CPM2,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR
37654	12569412	Sobajima H., Takeda M., Sugimori M., Kobashi N., Kiribuchi K., Eun-Min Cho, Akimoto C., Yamaguchi T., Minami E., Shibuya N., Schaller F., Elmar W Weiler, Yoshihara T., Nishida H., Nojiri H., Omori T., Nishiyama M., Yamane H.	Cloning and characterization of a jasmonic acid-responsive gene encoding 12-oxophytodienoic acid reductase in suspension-cultured rice cells.	Planta	216(4)	692-8	2003	OPR1	OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR
37655	12723614	Kaneko S., Kobayashi H.	Purification and characterization of extracellular beta-galactosidase secreted by supension cultured rice (Oryza sativa L.) cells.	Biosci. Biotechnol. Biochem.	67(3)	627-30	2003	BGAL8	OsBgal8, OsBGal8
37656	0	Yoon U.H., Lee J., Hahn J.H., Kim Y.K., Lee G.S., Ji H.S., Kim C.K., Mun J.H., Kim Y.M., Kim T.H.	Structural and expression analysis of prolamin genes in Oryza sativa L	Plant Biotechnol Rep	6	251-262	2012	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	Prol-13,Prol-01, CysR10, crP10, pro10.1,Prol-26, pro13a.6,Prol-03, pro13b.5,Prol-07,PG5b, Prol-08, pro13b.14,Prol-15, pro13b.22,Prol-24, pro13a.3,Prol-02, pro10.3,Prol-05, pro13b.9,Prol-09, Prol-27,Prol-23, pro10.4, SSA5,Prol-10, pro13b.16, PROLM12,Prol-11, pro13b.17, PROLM13,Prol-12, pro13b.18,Prol-21, pro13b.2, PROLM20,Prol-22, pro13b.3, PROLM22,Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, PROLM28,Prol-20, pro13b.1, PROLM19 ,Prol-04, pro13b.8, PROLM4,CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,Prol-16, OsEnS-87, EnS-87, pro16.1,Prol-14, pro13b.21, PROLM17,RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25,Prol-17, OsEnS-88, pro16.2, PROLM24,Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26
37657	23797600	Mizobuchi R., Sato H., Fukuoka S., Tsushima S., Imbe T., Yano M.	Identification of qRBS1, a QTL involved in resistance to bacterial seedling rot in rice.	Theor. Appl. Genet.	126(9)	2417-25	2013		
37658	23803744	Wakasa Y., Hayashi S., Takaiwa F.	Effect of overexpression of kinase-or RNase-deficient OsIRE1 on the endoplasmic reticulum stress response in transgenic rice plants.	Plant Signal Behav	8(9)	 e25343	2013		
37659	23831949	Ueda Y., Uehara N., Sasaki H., Kobayashi K., Yamakawa T.	Impacts of acute ozone stress on superoxide dismutase (SOD) expression and reactive oxygen species (ROS) formation in rice leaves.	Plant Physiol. Biochem.	70	396-402	2013		
37660	23763241	Kurokawa S., Nakamura R., Mejima M., Kozuka-Hata H., Kuroda M., Takeyama N., Oyama M., Satoh S., Kiyono H., Masumura T., Teshima R., Yuki Y.	MucoRice-cholera toxin B-subunit, a rice-based oral cholera vaccine, down-regulates the expression of alpha-amylase/trypsin inhibitor-like protein family as major rice allergens.	J. Proteome Res.	12(7)	3372-82	2013		
37661	23790109	Takagi H., Uemura A., Yaegashi H., Tamiru M., Abe A., Mitsuoka C., Utsushi H., Natsume S., Kanzaki H., Matsumura H., Saitoh H., Yoshida K., Cano L.M., Kamoun S., Terauchi R.	MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii.	New Phytol.	200(1)	276-83	2013	_	Pii
37662	23789941	Hori K., Ogiso-Tanaka E., Matsubara K., Yamanouchi U., Ebana K., Yano M.	Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.	Plant J.	76(1)	36-46	2013	HD2,HD16,GHD7,HD5	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
37663	23832214	Momma M., Fujimoto Z.	Expression, crystallization and preliminary X-ray analysis of rice L-galactose dehydrogenase.	Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.	69(Pt 7)	809-11	2013		
37664	23889289	Taniguchi S., Hosokawa-Shinonaga Y., Tamaoki D., Yamada S., Akimitsu K., Gomi K.	Jasmonate induction of the monoterpene linalool confers resistance to rice bacterial blight and its biosynthesis is regulated by JAZ protein in rice.	Plant Cell Environ.	37(2)	451-61	2013	TIFY10C	OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
37665	23874658	Fekih R., Takagi H., Tamiru M., Abe A., Natsume S., Yaegashi H., Sharma S., Sharma S., Kanzaki H., Matsumura H., Saitoh H., Mitsuoka C., Utsushi H., Uemura A., Kanzaki E., Kosugi S., Yoshida K., Cano L., Kamoun S., Terauchi R.	MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice.	PLoS ONE	8(7)	e68529	2013		
37666	23673217	Muto T., Todoroki Y.	Brassinolide-2,3-acetonide: a brassinolide-induced rice lamina joint inclination antagonist.	Bioorg. Med. Chem.	21(14)	4413-9	2013		
37667	23987813	Funabiki A., Takano S., Matsuda S., Tokuji Y., Takamure I., Kato K.	The rice reduced culm number11 gene controls vegetative growth under low-temperature conditions in paddy fields independent of RCN1/OsABCG5.	Plant Sci.	211	70-6	2013		
37668	23212304	Kajiura H., Wasai M., Kasahara S., Takaiwa F., Fujiyama K.	N-glycosylation and N-glycan moieties of CTB expressed in rice seeds.	Mol. Biotechnol.	54(3)	784-94	2013		
37669	23989667	Toda Y., Yoshida M., Hattori T., Takeda S.	RICE SALT SENSITIVE3 binding to bHLH and JAZ factors mediates control of cell wall plasticity in the root apex.	Plant Signal Behav	8(11)	e26256	2013		
37670	23910376	Miyazaki M., Araki M., Okamura K., Ishibashi Y., Yuasa T., Iwaya-Inoue M.	Assimilate translocation and expression of sucrose transporter, OsSUT1, contribute to high-performance ripening under heat stress in the heat-tolerant rice cultivar Genkitsukushi.	J. Plant Physiol.	170(18)	1579-84	2013		
37674	21635897	Wei T., Miyazaki N., Uehara-Ichiki T., Hibino H., Shimizu T., Netsu O., Kikuchi A., Sasaya T., Iwasaki K., Omura T.	Three-dimensional analysis of the association of viral particles with mitochondria during the replication of rice gall dwarf virus	J. Mol. Biol.	410	436-446	2011		
37675	0	Taguchi-Shiobara F., Kawagoe Y., Kato H., Onodera H., Tagiri A., Hara N., Miyao A., Hirochika H., Kitano H., Yano M., Toki S.	A loss-of-function mutation of rice DENSE PANICLE 1 causes semi-dwarfness and slightly increased number of spikelets	Breed. Sci.	61	17-25	2011	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
37677	21171893	Ando S., Sato Y., Shigemori H., Shimizu T., Okada K., Yamane H., Jikumaru Y., Kamiya Y., Yamada K., Akimoto-Tomiyama C., Tanabe S., Nishizawa Y., Minami E.	Identification and characterization of 2'-deoxyuridine from the supernatant of conidial suspensions of rice blast fungus as an infection-promoting factor in rice plants	Molecular Plant-Microbe Interactions	24	519-532	2011		
37680	21248479	Xia J., Yamaji N., Ma J.F.	Further characterization of an aluminum influx transporter in rice	Plant Signaling and Behavior	6	-	2011		
37682	0	Suzuki Y.	Isolation and characterization of a rice (Oryza sativa L.) mutant deficient in seed phospholipase D, an enzyme involved in the degradation of oil-body membranes	Crop Sci.	51	567-573	2011		
37683	0	Mochizuki S., Saitoh K., Minami E., Nishizawa Y.	Localization of probe-accessible chitin and characterization of genes encoding chitin-binding domains during rice-Magnaporthe oryzae interactions	Journal of General Plant Pathology	77	163-173	2011		
37684	21255809	Shinano T., Komatsu S., Yoshimura T., Tokutake S., Kong F.J., Watanabe T., Wasaki J., Osaki M.	Proteomic analysis of secreted proteins from aseptically grown rice.	Phytochemistry	72(4-5)	312-20	2011		
37690	21392842	Kato-Noguchi H.	Barnyard grass-induced rice allelopathy and momilactone B	J. Plant Physiol.	168	1016-1020	2011		
37696	23466256	Ikeda M., Miura K., Aya K., Kitano H., Matsuoka M.	Genes offering the potential for designing yield-related traits in rice.	Curr. Opin. Plant Biol.	16(2)	213-20	2013	DEP1,DEP3,TAD1,EP2,SP1,NGLF,EP3,FZP,RFL,ASP1,FLO2,APO1,LK3,LAX2,D3,GN1A,DLT,SRS3,MOC1,TLD1,HGW,TID1,GW5,GIF1,GW2,GS5,GW8,SG1,ILI6,D14,LRA1,GHD7,WFP,D17,LAX1,FC1,PAP2,D10,HD5,D27,EF1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,dep3, OspPLAIIIdelta, pPLAIIIdelta,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, CL7(t),sp, SP, OsNPF4.1, NPF4.1,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 ,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,OsLAX2, Gnp4/LAX2, Gnp4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsSRS3, SAR1, OsSAR1,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,HGW,OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, ,qSW5/GW5, GSE5,gif1, CIN2, OsCIN2, OsGIF1,OsGW2,OsSCP26, SCP26, OsGS5,SPL16, OsSPL16, SLP1, qGW8,OsSG1, Sg1,ILI6, OsILI6, PGL1, OsPGL1,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,OsPIN2, PIN2, OsLRA1,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,d27(d t), dt, dwf23, d27, OsD27,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
37697	24345551	Liang W., Shang F., Lin Q., Lou C., Zhang J.	Tillering and panicle branching genes in rice.	Gene	537(1)	1-5	2014	DEP2,DEP3,TAD1,SP1,DLT,DEP1,RFL,GN1A,WFP,D17,D10,D14,LAX2,APO1,D3,MADS57,FC1,MOC1,D27,LAX1	,dep3, OspPLAIIIdelta, pPLAIIIdelta,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 ,sp, SP, OsNPF4.1, NPF4.1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,OsLAX2, Gnp4/LAX2, Gnp4,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,OsMADS57, MADS-57,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33,d27(d t), dt, dwf23, d27, OsD27,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
37698	21317545	Abe Y., Mieda K., Ando T., Kono I., Yano M., Kitano H., Iwasaki Y.	The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice.	Genes Genet. Syst.	85(5)	327-39	2010	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, CL7(t)
37699	20502443	Li F., Liu W., Tang J., CHEN J., Tong H., Hu B., Li C., Fang J., Chen M., Chu C	Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation.	Cell Res.	20	839-849	2010	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, CL7(t)
37700	20547591	Minakuchi K., Kameoka H., Yasuno N., Umehara M., Luo L., Kobayashi K., Hanada A., Ueno K., Asami T., Yamaguchi S., KYOZUKA J.	FINE culm1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice.	Plant Cell Physiol.	51(7)	1127-35	2010	D10,D17,FC1	d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
37701	18690207	Umehara M., Hanada A., Yoshida S., Akiyama K., Arite T., Noriko Takeda-Kamiya, Magome H., Kamiya Y., Shirasu K., Yoneyama K., KYOZUKA J., Yamaguchi S.	Inhibition of shoot branching by new terpenoid plant hormones.	Nature	455(7210)	195-200	2008	D17,D10,D3	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3
37702	20587735	Kitagawa K., Kurinami S., Oki K., Abe Y., Ando T., Kono I., Yano M., Kitano H., Iwasaki Y.	A novel kinesin 13 protein regulating rice seed length.	Plant Cell Physiol.	51(8)	1315-29	2010	SRS3	OsSRS3, SAR1, OsSAR1
37703	24764504	Segami S., Kono I., Ando T., Yano M., Kitano H., Miura K., Iwasaki Y.	Small and round seed 5 gene encodes alphatubulin regulating seed cell elongation in rice	Rice (N Y)	5	4	2012	TID1	OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, 
37763	24097262	Liang M., Yin X., Lin Z., Zheng Q., Liu G., Zhao G.	Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).	Planta	239(1)	107-26	2014	HAP5C,HAP5G,HAP5B,HAP5D,HAP5F,HAP5A,HAP5E	OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7
37764	0	Wang A.a b, Zhang X.a, Yang C.c, Song Z.a, Du C.d, Chen D.a, He Y.a, Cai D.a	Development and characterization of synthetic amphiploid (AABB) between Oryza sativa and Oryza punctata	Euphytica	189	1-8	2013		
37765	0	Yasuda K.a, Tsukiyama T.a, Karki S.b, Okumoto Y.a, Teraishi M.a, Saito H.a, Tanisaka T.a	Mobilization of the active transposon mPing in interspecific hybrid rice between Oryza sativa and O. glaberrima	Euphytica	192	17-24	2013	MPING	mPing
37766	23832302	Nosaka M., Ono A., Ishiwata A., Shimizu-Sato S., Ishimoto K., Noda Y., Sato Y.	Expression of the rice microRNA miR820 is associated with epigenetic modifications at its own locus	Genes and Genetic Systems	88	105-112	2013	MIR820D,MIR820E,MIR820A,MIR820B,MIR820C	miR820d, osa-miR820d, osa-MIR820d,miR820e, osa-miR820e, osa-MIR820e,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c
37767	0	Manangkil O.E.a, Vu H.T.T.b, Mori N.c, Yoshida S.d, Nakamura C.c	Mapping of quantitative trait loci controlling seedling vigor in rice (Oryza sativa L.) under submergence	Euphytica	192	63-75	2013		
37768	0	Koide Y.a b, Fujita D.b c, Tagle A.G.b, Sasaki K.a b, Ishimaru T.a b, Fukuta Y.a, Kobayashi N.a b c	QTL for spikelet number from a high-yielding rice variety, Hoshiaoba, detected in an introgression line with the genetic background of an indica rice variety, IR64	Euphytica	192	97-106	2013		
37769	24336215	Zhou F.a b, Lin Q.b, Zhu L.a, Ren Y.b, Zhou K.a, Shabek N.c d, Wu F.b, Mao H.c d, Dong W.b, Gan L.b, Ma W.b, Gao H.a, Chen J.b, Yang C.a, Wang D.b, Tan J.b, Zhang X.b, Guo X.b, Wang J.b, Jiang L.a, Liu X.a, Chen W.e, Chu J.e, Yan C.f, Ueno K.f, Ito S.f, Asami T.b, Cheng Z.b, Wang J.b, Lei C.b, Zhai H.b, Wu C.b, Wang H.b, Zheng N.c d, Wan J.a b	D14-SCF D3 -dependent degradation of D53 regulates strigolactone signalling	Nature	504	406-410	2013	_,D53,D14,D3	D53-like,D53(D K3), DK3, Dwf34, SMXL6/7/8,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3
37770	0	Liu T.a b, Yu T.a, Xing Y.a	Identification and validation of a yield-enhancing QTL cluster in rice (Oryza sativa L.)	Euphytica	192	145-153	2013		
37772	0	Zhao W.G.a b, Chung J.W.c, Kwon S.W.a d, Lee J.H.e, Ma K.H.c, Park Y.J.a d	Association analysis of physicochemical traits on eating quality in rice (Oryza sativa L.)	Euphytica	191	9-21	2013		
37774	0	Sun P.a b d, Liu J.a, Wang Y.a, Jiang N.a, Wang S.a, Dai Y.a, Gao J.a, Li Z.a, Pan S.a, Wang D.a, Li W.a, Liu X.a, Xiao Y.a, Liu E.a, Wang G.L.a c, Dai L.a b	Molecular mapping of the blast resistance gene Pi49 in the durably resistant rice cultivar Mowanggu	Euphytica	192	45-54	2013	PI49	Pi49, Pi49(t)
37775	0	Yu J.a b, Zhao H.a, Zhu T.c, Chen L.a, Peng J.a d	Transferability of rice SSR markers to Miscanthus sinensis, a potential biofuel crop	Euphytica	191	455-468	2013		
37776	23706075	Yan Y.F.a b, Lestari P.a c, Lee K.J.a, Kim M.Y.a, Lee S.H.a, Lee B.W.a	Identification of quantitative trait loci for cadmium accumulation and distribution in rice (Oryza sativa)	Genome	56	227-232	2013		
37777	0	Cui D.a, Xu C.Y.b, Tang C.F.c, Yang C.G.d, Yu T.Q.c, A X.X.c, Cao G.L.a, Xu F.R.c, Zhang J.G.d, Han L.Z.a	Genetic structure and association mapping of cold tolerance in improved japonica rice germplasm at the booting stage	Euphytica	193	369-382	2013		
37778	0	Shanmugavadivel P.S.a, Mithra S.V.A.a, Dokku P.a, Kumar K.A.R.a, Rao G.J.N.c, Singh V.P.b, Singh A.K.b, Singh N.K.a, Mohapatra T.a c	Mapping quantitative trait loci (QTL) for grain size in rice using a RIL population from Basmati ~ indica cross showing high segregation distortion	Euphytica	194	401-416	2013		
37779	0	Colombari Filho J.M.a, de Resende M.D.V.b, de Morais O.P.a, de Castro A.P.a, Guimar?es ?.P.a, Pereira J.A.c, Utumi M.M.d, Breseghello F.a	Upland rice breeding in Brazil: A simultaneous genotypic evaluation of stability, adaptability and grain yield	Euphytica	192	117-129	2013		
37780	0	Wu D.H.a, Wu H.P.b, Wang C.S.b, Tseng H.Y.b, Hwu K.K.b	Genome-wide InDel marker system for application in rice breeding and mapping studies	Euphytica	192	131-143	2013		
37781	0	Kim S.I., Tai T.H.	High resolution genotyping by restriction enzyme-phased sequencing of advanced backcross lines of rice exhibiting differential cold stress recovery	Euphytica	192	107-115	2013		
37782	0	Kamiya T.a, Islam M.R.a c, Duan G.a d, Uraguchi S.a e, Fujiwara T.a b	Phosphate deficiency signaling pathway is a target of arsenate and phosphate transporter OsPT1 is involved in As accumulation in shoots of rice	Soil Sci. Plant Nutr.	59	580-590	2013	PT4,PT2,PT1,PT8	OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsPT8, PHT1-8, OsPht1;8, Pht1;8
37783	0	Miyazaki N.a, Ueno O.b, Saitou K.b	Effects of nitrogen on the expression of ribulose-1,5- bisphosphate carboxylase/oxygenase small subunit multigene family members in Rice (Oryza sativa L.)	Plant Prod. Sci.	16	37-40	2013	_,_,_,_,RBCS	RbcS1, OsRBCS1, OsRbcS1,RbcS, RbcS4, OsRBCS4, OsRbcS4,RbcS5, OsRBCS5, OsRbcS5,RbcS3, OsRBCS3, OsRbcS3, rbcS ,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
37784	0	Sripinyowanich S.a e, Klomsakul P.a, Boonburapong B.b, Bangyeekhun T.a, Asami T.c, Gu H.d, Buaboocha T.a b, Chadchawan S.a	Exogenous ABA induces salt tolerance in indica rice (Oryza sativa L.): The role of OsP5CS1 and OsP5CR gene expression during salt stress	Environ. Exp. Bot.	86	94-105	2013		
37785	0	Lv B.S.a b, Li X.W.a c, Ma H.Y.c, Sun Y.d, Wei L.X.c, Jiang C.J.e, Liang Z.W.c	Differences in growth and physiology of rice in response to different saline-alkaline stress factors	Agron J	105	1119-1128	2013	_,NAC4,P5CS,_	OsM6PR1, OsM6PR2, M6PR, OsS6PDH, S6PDH,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,P5CS2, OsP5CS2, OsALDH18B2, ALDH18B2 
37786	0	Shirasawa S.a, Kifuji Y.a c, Komiya R.a d, Kitashiba H.a, Nishimura M.b, Nishio T.a	Identification of a single nucleotide deletion causing frameshift mutation in OsDFR2A in a genic male sterile mutant of rice and its possible application to F1 hybrid breeding	Molecular Breeding	31	805-814	2013	_	OsTKPR1, OsDFR2, OS-DFR2, OsDFR2A
37787	0	Koshiba T.a, Hirose N.a, Mukai M.a, Yamamura M.a, Hattori T.a d, Suzuki S.a, Sakamoto M.b, Umezawa T.a c	Characterization of 5-hydroxyconiferaldehyde O-methyltransferase in Oryza sativa	Plant Biotechnology	30	157-167	2013	PAL,_,HCT1,_,COMTL4,CCR19,_,_,_,CAD8C,_,HCT2,_,CCR20,_,CCR21,_,_,4CL3,4CL5,GH2,PAL1,_,ROMT9	OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,CADL,OsHCT1,HCT3,OsCOMTL4, COMT2 ,OsCCR19 ,OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,OsF5HL2, F5HL2, CYP84A6, OsCYP84A6,OsCAD8C, CAD8c,C3H1, C3'H, OsC3H1, OsC3'H,OsHCT2, HCT,ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,ROMT-17, ROMT17, CCoAOMT1,OsCCR21 ,C4H2, OsC4H, OsC4HL, C4H,C4H1, OsC4H1, OsC4H, C4H,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Os4CL5, 4CL3, Os4CL3,gh2, CAD2, CAD, OsCAD2, GH2 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsACS9, ACS9, 4CL4, OsACOS12, ACOS12 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT
37788	0	Li W., Xie T., Qiu Q., Ning T., Yang D.	A Short Peptide in rice glutelin Directs Trafficking of Protein into the Protein Storage Vacuoles of the Endosperm Cells	Plant Molecular Biology Reporter	31	1492-1505	2013	_,GLUA2	OsRMR3, OsRMR1, RMR1,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137
37789	0	Miao Y.a, Li R.a, Xiong F.a, Zeng Z.a, Niu X.b, Liu Y.a b	RNA interference vector construction, genetic transformation and function analysis of rice transcription factor OsMYB14	Chinese Journal of Applied and Environmental Biology	19	960-968	2013	_	OsMYB14, MYB14, JAdMYB1
37790	0	Xu G., Cui Y., Li M., Wang M., Yu Y., Zhang B., Huang L., Xia X.	OsMSR2, a novel rice calmodulin-like gene, confers enhanced salt tolerance in rice (Oryza sativa L.)	Aust J Crop Sci	7	368-373	2013	CML31,DREB2A	OsCML31, OsMSR2, MSR2,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
37791	0	Wang H.a, Bian M.a, Yang Z.a, Lin C.a b, Shi W.a	Preliminary Functional Analysis of the Isoforms of OsHsfA2a (Oryza sativa L.) Generated by Alternative Splicing	Plant Molecular Biology Reporter	31	38-46	2013	HSFA2A	HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e 
37792	0	Li S.a b, Luo G.a, Qiao F.a, Wang F.b, Zhao K.b, Wang C.b	Influence of Xanthomonas oryzae pv. oryzae PX099 Inoculation on Antioxidant Enzyme Activity and Defense Gene Expression in CBB23	Chinese Journal of Applied and Environmental Biology	19	980-985	2013	PR4,JAMYB,PR1B	OsPR4, OsPR4a, PR4a, OsPR-4,OsJAmyb, JAmyb, OsJAMyb ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
37793	0	Wang X.a b c, Chen J.a b c, Yang Y.a b c, Zhou J.a b c, Qiu Y.a b c, Yu C.a b c, Cheng Y.a b c, Yan C.a b c, Chen J.a b c	Characterization of a Novel NBS-LRR Gene Involved in Bacterial Blight Resistance in Rice	Plant Molecular Biology Reporter	31	649-656	2013	PR1-51,_,PR1-12,_,STR6,PR1B	OsPR1#051, OsPR1-51,TPS, OsTPS30,OsPR1#012, OsPR1-12,OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33,OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
37794	0	Zhuang J.a, Jiang H.H.b, Wang F.a, Peng R.H.b, Yao Q.H.b, Xiong A.S.a	A Rice OsAP23, Functioning as an AP2/ERF Transcription Factor, Reduces Salt Tolerance in Transgenic Arabidopsis	Plant Molecular Biology Reporter	31	1336-1345	2013	ERF88,ERF12,ERF92	OsERF#088, OsERF088, OsERF88, AP2/EREBP#024, AP2/EREBP24, OsAP23,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78
37795	0	Xu G., Li M., Huang M., Cui Y., Wang M., Xia X.	The Negative Regulator OsSDS1 Significantly Reduces Salt and drought tolerance in Transgenic Arabidopsis	Plant Molecular Biology Reporter	31	517-523	2013	_	OsSDS1
37796	0	Cui Y.a b, Xu G.a, Wang M.a, Yu Y.a b, Li M.a b, da Rocha P.S.C.F.a, Xia X.a	Expression of OsMSR3 in Arabidopsis enhances tolerance to cadmium stress	Plant Cell Tissue Organ Cult.	113	331-340	2013	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
37797	0	Chen X.W.a, Wu F.Y.b, Li H.c, Chan W.F.a, Wu C.d, Wu S.C.e, Wong M.H.f	Phosphate transporters expression in rice (Oryza sativa L.) associated with arbuscular mycorrhizal fungi (AMF) colonization under different levels of arsenate stress	Environ. Exp. Bot.	87	92-99	2013		
37799	0	Naeem M.a c, Freed S.b, Quan Z.G.a	Molecular genetic studies of heading date gene OsMADS50 by using single segment substitution lines in Oryza sativa	Int J Agric Biol	15	631-639	2013	RFT1,MADS50,HD3A	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
37800	0	Liu Y.a, Donner E.b, Lombi E.b, Li R.c, Wu Z.a, Zhao F.J.d e, Wu P.a	Assessing the contributions of lateral roots to element uptake in rice using an auxin-related lateral root mutant	Plant Soil	372	125-136	2013	IAA11	OsIAA11
37801	24280537	Zhang F.a, Luo X.a, Hu B.b, Wan Y.b, Xie J.a	YGL138(t), encoding a putative signal recognition particle 54 kDa protein, is involved in chloroplast development of rice	Rice (N Y)	6	7	2013	YGL138	YGL138(t), SRP54, OsSRP54 
37802	24295067	Wankhede D.P.a, Kumar K.a b, Singh P.a, Sinha A.K.a	Involvement of mitogen activated protein kinase kinase 6 in UV induced transcripts accumulation of genes in phytoalexin biosynthesis in rice	Rice (N Y)	6	35	2013	MKK1,MKK6,CYP99A3,MAS,KS4,SMG1	OsMKK1, OsMEK2,OsMKK6, OsMEK1,,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 ,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1
37803	0	Chatterjee J., Patra B., Mukherjee R., Basak P., Mukherjee S., Ray S., Bhattacharyya S., Maitra S., GhoshDastidar K., Ghosh S., Sengupta S., Majumder A.L.	Cloning, characterization and expression of a chloroplastic fructose-1,6-bisphosphatase from Porteresia coarctata conferring salt-tolerance in transgenic tobacco	Plant Cell Tissue Organ Cult.	114	395-409	2013	_,MOC2	OsCFR,FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1
37804	0	Kantama L.a, Junbuathong S.b, Sakulkoo J.c, de Jong H.e, Apisitwanich S.c d	Epigenetic changes and transposon reactivation in Thai rice hybrids	Molecular Breeding	31	815-827	2013	MASHU,STOW-OS1	Mashu,Stow-Os1
37805	0	Baldoni E.a, Genga A.a, Medici A.a b, Coraggio I.a, Locatelli F.a	The OsMyb4 gene family: Stress response and transcriptional auto-regulation mechanisms	Biol. Plant.	57	691-700	2013	_,_,_,_,_	,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110,OsMYB58/63-L,OsMYB30, MYB30, OsMYB5P, MYB5P
37806	0	Yooyongwech S.a, Cha-um S.b, Supaibulwatana K.c	Water relation and aquaporin genes (PIP1;2 and PIP2;1) expression at the reproductive stage of rice (Oryza sativa L. spp. indica) mutant subjected to water deficit stress	Plant OMICS	6	79-85	2013	PIP1;2,PIP2A	OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1
37807	24016103	Goli?? J.a b, Humlov? Z.c, Halada P.a, H?bov? V.a, Janatkov? I.c, Tu?kov? L.a	Identification of rice proteins recognized by the IgE antibodies of patients with food allergies	J. Agric. Food Chem.	61	8851-8860	2013		
37808	0	Zaplin E.S.a b c, Liu Q.a c, Li Z.a c, Butardo Jr V.M.a c, Blanchard C.L.b, Rahman S.a c d	Production of high oleic rice grains by suppressing the expression of the OsFAD2-1 gene	Functional Plant Biology	40	996-1004	2013	_,_,_,_	OsFAD2-3,OsFAD2-4,OsFAD2, OsFAD2-1,OsFAD2-2
37810	0	Wei M.Y., Chao Y.Y., Kao C.H.	NaCl-induced heme oxygenase in roots of rice seedlings is mediated through hydrogen peroxide	Plant Growth Regul.	69	209-214	2013	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
37811	0	Kim H.J.a c, Kieber J.J.b, Schaller G.E.a	The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signaling	Plant Signaling and Behavior	8		2013	_,_,_,_	OsKMD4, OsFbox596, Os_F0436,OsKMD3, OsFbox096, OsFbox96, Os_F0169,OsKMD2, OsFbox314, Os_F0507,OsKMD1, OsFbox074, OsFbox74, Os_F0323
37812	0	Yoo S.C., Cho S.H., Paek N.C.	Rice WUSCHEL-related homeobox 3A (osWoX3a) modulates auxin-transport gene expression in lateral root and root hair development	Plant Signaling and Behavior	8		2013	NAL2,NAL3	nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
37813	23199687	Son Y.S., Im C.H., Kim D.W., Bahk J.D.	OsRab11 and OsGAP1 are essential for the vesicle trafficking of the vacuolar H+-ATPase OsVHA-a1 under high salinity conditions	Plant Science	198	58-71	2013	_,_,_	OsRab11D1, OsRab11, Rab11, ric2,OsVHA-a1,OsGAP1, GAP1
37814	23381136	Li-Hua Zhao, X Edward Zhou, Zhong-Shan Wu, Yi W., Xu Y., Li S., Ting-Hai Xu, Liu Y., Run-Ze Chen, Kovach A., Kang Y., Hou L., He Y., Xie C., Song W., Zhong D., Xu Y., Wang Y., Li J., Zhang C., Melcher K., H Eric Xu	Crystal structures of two phytohormone signal-transducing alpha/beta hydrolases: karrikin-signaling KAI2 and strigolactone-signaling DWARF14.	Cell Res.	23(3)	436-9	2013	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4
37815	21781332	Fan L., Wang Z., Liu J., Guo W., Yan J., Huang Y.	A survey of green plant tRNA 3'-end processing enzyme tRNase ZS, homologs of the candidate prostate cancer susceptibility protein ELAC2.	BMC Evol. Biol.	11	219	2011	TMS5,TRZ2,TRZ3	TRZ1, OsTRZ1, OsaTRZ1, OsTMS5,OsaTRZ2, OsTRZ2,OsaTRZ3, OsTRZ3
37816	23698632	Lim S.D., Cho H.Y., Park Y.C., Ham D.J., Lee J.K., Jang C.S.	The rice RING finger E3 ligase, OsHCI1, drives nuclear export of multiple substrate proteins and its heterogeneous overexpression enhances acquired thermotolerance.	J. Exp. Bot.			2013	_,_,_,GF14D,_,POX22.3,_	OsPAG1, OsPSA7,OsBGLU1,OsGRP1,GF14d, OsGF14d, Os14-3-3, 14-3-3d,OsHCI1, E3UL,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsbHLH065, OsbHLH65
37817	24333854	Han J., Li A., Liu H., Wen X., Zhao M., Korir N.B., Korir N.K., Wang C., Fang J.	Computational identification of microRNAs in the strawberry (Fragaria x ananassa) genome sequence and validation of their precise sequences by miR-RACE.	Gene	536(1)	151-62	2014		
37818	24297875	Fujita D., Trijatmiko K.R., Tagle A.G., Sapasap M.V., Koide Y., Sasaki K., Tsakirpaloglou N., Gannaban R.B., Nishimura T., Yanagihara S., Fukuta Y., Koshiba T., Slamet-Loedin IH., Ishimaru T., Kobayashi N.	NAL1 allele from a rice landrace greatly increases yield in modern indica cultivars.	Proc. Natl. Acad. Sci. U.S.A.	110(51)	20431-6	2013	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4
37819	24433207	Tian J., Isemura T., Kaga A., Vaughan D.A., Tomooka N.	Genetic diversity of the rice bean (Vigna umbellata) genepool as assessed by SSR markers.	Genome	56(12)	717-27	2013		
37820	24336204	Smith S.M.	Plant biology: Witchcraft and destruction.	Nature	504(7480)	384-5	2013	D14,D3,D53	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,D53(D K3), DK3, Dwf34, SMXL6/7/8
37821	24365594	Chen X., Hu J., Zhang H., Ding Y.	DNA methylation changes in photoperiod-thermo-sensitive male sterile rice PA64S under two different conditions.	Gene	537(1)	143-8	2014	PSBD,NAD7,_,PETA,_,PSAA	psbD, D2, OsPsbD1, OsPsbD2,nad7,mat-r, mat-r-1,petA, Cytf, cytF, Cyt f,VIP2, IPI1,PsaA, psaA, PsAA1
37822	24282300	Heslop-Harrison JS., Schwarzacher T.	Nucleosomes and centromeric DNA packaging.	Proc. Natl. Acad. Sci. U.S.A.	110(50)	19974-5	2013		
37823	24344283	Elliott J., Deryng D., M?ller C., Frieler K., Konzmann M., Gerten D., Glotter M., Fl?rke M., Wada Y., Best N., Eisner S., Fekete B.M., Folberth C., Foster I., Gosling S.N., Haddeland I., Khabarov N., Ludwig F., Masaki Y., Olin S., Rosenzweig C., Ruane A.C., Satoh Y., Schmid E., Stacke T., Tang Q., Wisser D.	Constraints and potentials of future irrigation water availability on agricultural production under climate change.	Proc. Natl. Acad. Sci. U.S.A.	111(9)	3239-44	2014		
37824	24564211	Liu Y.H., Zhang M., Wu C., Huang J.J., Zhang H.B.	DNA is structured as a linear "jigsaw puzzle" in the genomes of Arabidopsis, rice, and budding yeast.	Genome	57(1)	9-19	2014		
37825	24321689	Lin X., Yao Y., Jin M., Li Q.	Characterization of the Distal-less gene homologue, NlDll, in the brown planthopper, Nilaparvata lugens (St?l).	Gene	535(2)	112-8	2014		
37826	24363334	Hara Y., Yokoyama R., Osakabe K., Toki S., Nishitani K.	Function of xyloglucan endotransglucosylase/hydrolases in rice.	Ann. Bot.			2013	XTH19,XTH11,XTH20	OsXTH19,OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH20, XET32
37827	24361504	P?rez-Tienda J., Corr?a A., Azc?n-Aguilar C., Ferrol N.	Transcriptional regulation of host NH?? transporters and GS/GOGAT pathway in arbuscular mycorrhizal rice roots.	Plant Physiol. Biochem.	75	1-8	2014	AMT2;1,AMT3;1,AMT1;1,GLT2	OsAMT2;1, AMT2-1, OsAMT2.1,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2
37828	24459431	Rerksiri W., Zhang X., Xiong H., Chen X.	Expression and promoter analysis of six heat stress-inducible genes in rice.	ScientificWorldJournal	2013	397401	2013	_,_,_,HSFB2C,HSFA2A,RAB16D	OsDjC53,Hsp90, OsHSP90.1,AWPM-19, PM19, OsPM1, OsPM19L1, PM1, PM19L1, OsAWPM-19, OsPM19,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,rab21, OsLEA26, Rab16D, OsRab16
37829	24371168	Yi J., Liu L., Cao Y., Li J., Mei M.	Cloning, characterization and expression of OsFMO(t) in rice encoding a flavin monooxygenase.	J. Genet.	92(3)	471-80	2013	YUCCA1,COW1	OsYUCCA1, OsYUC1,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
37830	24312593	Wang C., Wei Q., Zhang K., Wang L., Liu F., Zhao L., Tan Y., Di C., Yan H., Yu J., Sun C., Chen W.J., Xu W., Su Z.	Down-regulation of OsSPX1 causes high sensitivity to cold and oxidative stresses in rice seedlings.	PLoS ONE	8(12)	e81849	2013	_	OsSPX1, SPX1
37831	24365575	Trivedi D.K., Ansari M.W., Dutta T., Singh P., Tuteja N.	Molecular characterization of cyclophilin A-like protein from Piriformospora indica for its potential role to abiotic stress tolerance in E. coli.	BMC Res Notes	6	555	2013		
37832	24534105	Verma J.K., Gayali S., Dass S., Kumar A., Parveen S., Chakraborty S., Chakraborty N.	OsAlba1, a dehydration-responsive nuclear protein of rice (Oryza sativa L. ssp. indica), participates in stress adaptation.	Phytochemistry	100	16-25	2014	ALBA1	OsAlba1, Alba1
37833	24474801	Hu Y., Zhang J., Jia H., Sosso D., Li T., Frommer W.B., Yang B., White F.F., Wang N., Jones J.B.	Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease.	Proc. Natl. Acad. Sci. U.S.A.	111(4)	E521-9	2014		
37834	24702065	Ge Z.Y., Wan P.J., Li G.Q., Xia Y.G., Han Z.J.	Characterization of cysteine protease-like genes in the striped rice stem borer, Chilo suppressalis.	Genome	57(2)	79-88	2014		
37835	24393458	Breitenbach J., Bai C., Rivera S.M., Canela R., Capell T., Christou P., Zhu C., Sandmann G.	A novel carotenoid, 4-keto-alpha-carotene, as an unexpected by-product during genetic engineering of carotenogenesis in rice callus.	Phytochemistry	98	85-91	2014		
37836	24583583	Huang B.E., Raghavan C., Mauleon R., Broman K.W., Leung H.	Efficient Imputation of Missing Markers in Low-Coverage Genotyping-by-Sequencing Data from Multi-Parental Crosses.	Genetics	197(1)	401-4	2014		
37837	24563202	Barakate A., Higgins J.D., Vivera S., Stephens J., Perry R.M., Ramsay L., Colas I., Oakey H., Waugh R., Franklin F.C., Armstrong S.J., Halpin C.	The Synaptonemal Complex Protein ZYP1 Is Required for Imposition of Meiotic Crossovers in Barley.	Plant Cell	26(2)	729-40	2014		
37838	24583172	Qu X., Jiang J., Shang X., Cheng C., Feng L., Liu Q.	Construction and analysis of gonad suppression subtractive hybridization libraries for the rice field eel, Monopterus albus.	Gene	540(1)	20-5	2014		
37839	24525402	Chen Y., Cao J.	Comparative genomic analysis of the Sm gene family in rice and maize.	Gene	539(2)	238-49	2014	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CYP7,_,_,_,_	,,,,,,,,,,,,,,,,,,,,OsCYP-7,,,,
37840	24642938	Chen X.L., Shi T., Yang J., Shi W., Gao X., Chen D., Xu X., Xu J.R., Talbot N.J., Peng Y.L.	N-Glycosylation of Effector Proteins by an alpha-1,3-mannosyltransferase Is Required for the Rice Blast Fungus to Evade Host Innate Immunity.	Plant Cell	26(3)	1360-76	2014		
37841	24670769	Yvon-Durocher G., Allen A.P., Bastviken D., Conrad R., Gudasz C., St-Pierre A., Thanh-Duc N., del Giorgio PA.	Methane fluxes show consistent temperature dependence across microbial to ecosystem scales.	Nature	507(7493)	488-91	2014		
37842	24654274	Gewin V.	Retractions: A clean slate.	Nature	507(7492)	389-91	2014		
37843	24631263	Hwang S.G., Kim D.S., Hwang J.E., Han A.R., Jang C.S.	Identification of rice genes associated with cosmic-ray response via co-expression gene network analysis.	Gene	541(2)	82-91	2014	_,_,_,_,_,NAC85,_,NAC122,_	OsFbox481, Os_F0362, FBX322 ,UNP1,,UNP2,GID1, GID1L2,ONAC085, ONAC85,UDP-GT, OsENOD93-1,OsNAC10, NAC10, ONAC122, NAC122,UDP-GT, Os79 
37844	24424778	Wang X., Kudrna D.A., Pan Y., Wang H., Liu L., Lin H., Zhang J., Song X., Goicoechea J.L., Wing R.A., Zhang Q., Luo M.	Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping.	Genetics	196(4)	937-49	2014		
37845	24657062	Faris J.D., Zhang Z., Chao S.	Map-based analysis of the tenacious glume gene Tg-B1 of wild emmer and its role in wheat domestication.	Gene	542(2)	198-208	2014		
37846	24633159	Li Y., Fan C., Xing Y., Yun P., Luo L., Yan B., Peng B., Xie W., Wang G., Li X., Xiao J., Xu C., He Y.	Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in rice.	Nat. Genet.	46(4)	398-404	2014	_	Chalk5
37847	24434551	Seto Y., Sado A., Asami K., Hanada A., Umehara M., Akiyama K., Yamaguchi S.	Carlactone is an endogenous biosynthetic precursor for strigolactones.	Proc. Natl. Acad. Sci. U.S.A.	111(4)	1640-5	2014	D14,D10	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
37848	24482191	Yamada N., Theerawitaya C., Cha-Um S., Kirdmanee C., Takabe T.	Expression and functional analysis of putative vacuolar Ca(2+)-transporters (CAXs and ACAs) in roots of salt tolerant and sensitive rice cultivars.	Protoplasma			2014	ACA4,ACA5,ACA7,ACA6,_	osACA4, OsACA8, OsACA4,osACA5, OsACA9, OsACA5, OsPM12ATP4,osACA7, OsACA6, OsACA7, OsPM5ATP4 ,osACA6, OsACA1, OsACA6, OsPM1ATPaseII,CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3
37849	24563249	Kunihiro S., Kowata H., Kondou Y., Takahashi S., Matsui M., Berberich T., Youssefian S., Hidema J., Kusano T.	Overexpression of rice OsREX1-S, encoding a putative component of the core general transcription and DNA repair factor IIH, renders plant cells tolerant to cadmium- and UV-induced damage by enhancing DNA excision repair.	Planta	239(5)	1101-11	2014	_	OsREX1-S
37850	24482436	Chen X., Zuo S., Schwessinger B., Chern M., Canlas P.E., Ruan D., Zhou X., Wang J., Daudi A., Petzold C.J., Heazlewood J.L., Ronald P.C.	An XA21-Associated Kinase (OsSERK2) Regulates Immunity Mediated by the XA21 and XA3 Immune Receptors.	Mol Plant	7(5)	874-92	2014	_,_,XA3,MAS,XA21,PR10B,D61,_	OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,Os-FLS2, FLS2, OsFLS2,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 ,Xa21*, Xa21, OsXA21,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2
37851	24634487	Yamaya T., Kusano M.	Evidence supporting distinct functions of three cytosolic glutamine synthetases and two NADH-glutamate synthases in rice.	J. Exp. Bot.			2014	GLT1,_,GLN1;1,GLT2,GLN1;2	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
37852	24492654	Tiwari M., Sharma D., Singh M., Tripathi R.D., Trivedi P.K.	Expression of OsMATE1 and OsMATE2 alters development, stress responses and pathogen susceptibility in Arabidopsis.	Sci Rep	4	3964	2014	MATE2,MATE1	OsMATE2,OsMATE1
37853	24617729	Ke Y., Liu H., Li X., Xiao J., Wang S.	Rice OsPAD4 functions differently from Arabidopsis AtPAD4 in host-pathogen interactions.	Plant J.	78(4)	619-31	2014	_	PAD4, OsPAD4
37854	24577486	Tanaka N., Uraguchi S., Fujiwara T.	Exogenous Boron supplementation partially rescues fertilization defect of osbor4 mutant.	Plant Signal Behav	9(2)	e28356	2014	BOR4	OsBOR4
37855	24398379	Sahoo R., Tuteja N.	OsSUV3 functions in cadmium and zinc stress tolerance in rice (Oryza sativa L. cv IR64).	Plant Signal Behav	9(1)	e27389	2014	_	OsSUV3, SUV3
37856	24578505	Sun L.J., Zhang Q., Wu J.X., Zhang L.Q., Jiao X.W., Zhang S.W., Zhang Z.G., Sun D.Y., Lu T.G., Sun Y.	Two rice histidine phosphotransfer proteins, OsAHP1 and OsAHP2, mediate cytokinin signaling and stress responses in rice.	Plant Physiol.	165(1)	335-45	2014	PHP1,PHP2,PHP3,AHP1,AHP2,HKT1,NHX1,SOS1	OsPHP1, Hpt1, OsHP3, OsHpt1,OsPHP2, Hpt4, OsHP5, OsHpt4,OsPHP3, Hpt5, OsHP4, OsHpt5, OsHpt5a, OsHpt5b, OsHpt5c,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsNHX1,OsSOS1, OsNHA1
37857	24664473	Lim S.D., Hwang J.G., Han A.R., Park Y.C., Lee C., Ok Y.S., Jang C.S.	Positive regulation of rice RING E3 ligase OsHIR1 in arsenic and cadmium uptakes.	Plant Mol. Biol.	85(4-5)	365-79	2014	HSA32,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,C3H15,_,_,_,_,_,_,TIP4;1,_,_,_,_,_,_,_,_,RFI2,_,_	Hsa32, OsPPS1 ,OsRFPH2-3,OsHIR1, OsHSI1,OsOTU1,OsRFPH2-1,OsRFPH2-4,OsRFPH2-8,OsRFPH2-9,OsRFPH2-14,OsRFPH2-17,OsRFPH2-20,OsRFPH2-21,OsRFPH2-23,OsRFPHC-2,OsRFPHC-6,XBOS31, OsRFPHC-7,OsRFPHC-9,OsRFPHC-11,OsRFPHC-12,OsRFPH2-16, OsGIRP1,OsRFPHC-10, SIP13 ,OsRFPH2-15,OsRFPH2-2,OsRFPH2-6,OsRFPH2-7,OsRFPH2-13,OsRFPHC-8,HAIKU2,OsRFPH2-19,OsRFPHC-15,OsRFPV-3,OsRFPV-4,OsRFPV-5,OsRFPH2-11, OsHIR1,OsC3H15, OsRFPHC-3,OsRFPH2-12,OsRFPV-2,OsRFPH2-22,OsRFPHC-13, OsNLA, NAL, OsNLA1, NAL1,OsRab1B2, OsRas1,OsRFPHC-1, OsNLA2, NLA2 ,OsTIP4;1, TIP4-1,OsRFPHC-5, RFPHC-5,OsRFPHC-14, OsSTA9,OsRFPHC-4,OsRFPV-1,OsRFPV-6,OsRFPH2-5,OsRFPHC-16,OsRFPH2-18,OsRFPH2-10, RFPH2-10, OsRFI2 ,OsRFPH2-24, OsHRZ2, HRZ2,OsRFPV-7
37858	24564817	Guimaraes C.T., Simoes C.C., Pastina M.M., Maron L.G., Magalhaes J.V., Vasconcellos R.C., Guimaraes L.J., Lana U.G., Tinoco C.F., Noda R.W., Jardim-Belicuas SN., Kochian L.V., Alves V.M., Parentoni S.N.	Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan.	BMC Genomics	15	153	2014		
37859	24442518	Singh I., Shah K.	Evidences for structural basis of altered ascorbate peroxidase activity in cadmium-stressed rice plants exposed to jasmonate.	Biometals	27(2)	247-63	2014	APX1	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
37860	24506212	Wang W., Xie Z.P., Staehelin C.	Functional analysis of chimeric lysin motif domain receptors mediating Nod factor-induced defense signaling in Arabidopsis thaliana and chitin-induced nodulation signaling in Lotus japonicus.	Plant J.	78(1)	56-69	2014	CEBiP,_	CEBIP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9
37861	24627964	Uraguchi S., Kamiya T., Clemens S., Fujiwara T.	Characterization of OsLCT1, a cadmium transporter from indica rice (Oryza sativa).	Physiol Plant	151(3)	339-47	2014	LCT1	OsLCT1
37862	24412327	Zou Y., Liu X., Wang Q., Chen Y., Liu C., Qiu Y., Zhang W.	OsRPK1, a novel leucine-rich repeat receptor-like kinase, negatively regulates polar auxin transport and root development in rice.	Biochim. Biophys. Acta	1840(6)	1676-1685	2014	_,PIN5C,PIN8,PIN5B,PIN1D,PIN5A,PIN9,PIN10A,PIN1C,LRA1,PIN1B,PIN1A,PIN10B	OsRPK1,PIN5B, OsPIN5b, OsPIN5c,OsPIN8,PIN5C, OsPIN5c, OsPIN5b,OsPIN1D, OsPIN1d,OsPIN5a,OsPIN9,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsPIN2, PIN2, OsLRA1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,PIN3B, OsPIN3b, OsPIN10b
37863	24619164	Qi Y., Liu Q., Zhang L., Mao B., Yan D., Jin Q., He Z.	Fine mapping and candidate gene analysis of the novel thermo-sensitive genic male sterility tms9-1 gene in rice.	Theor. Appl. Genet.	127(5)	1173-82	2014	PTC1	OsMS1, tms9-1, OsPTC1, MS1, TMS9-1
37864	24452439	Zhang Y., Miao X., Xia X., He Z.	Cloning of seed dormancy genes (TaSdr) associated with tolerance to pre-harvest sprouting in common wheat and development of a functional marker.	Theor. Appl. Genet.	127(4)	855-66	2014	VP1,SDR4	Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L 
37865	24684436	Duan L., Liu H., Li X., Xiao J., Wang S.	Multiple phytohormones and phytoalexins are involved in disease resistance to Magnaporthe oryzae invaded from roots in rice.	Physiol Plant			2014	_,_,_,_,PAL,_,PAL1,CHS,PAL1,_	OsPAL05, PAL05, OsPAL3, PAL5, PAL3,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,ICS1, OsICS1, OsICS, ICS
37866	24688390	Peng X., Ding X., Chang T., Wang Z., Liu R., Zeng X., Cai Y., Zhu Y.	Overexpression of a Vesicle Trafficking Gene, OsRab7, Enhances salt tolerance in Rice.	ScientificWorldJournal	2014	483526	2014	_	OsRab7B3, Rab7B3, OsRab7, Rab7
37867	24430865	Jiang Q., Ma X., Gong X., Zhang J., Teng S., Xu J., Lin D., Dong Y.	The rice osdg2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage.	Plant Cell Rep.	33(5)	733-44	2014	_	OsDG2
37868	24475234	Shan C., Mei Z., Duan J., Chen H., Feng H., Cai W.	OsGA2ox5, a gibberellin metabolism enzyme, is involved in plant growth, the root gravity response and salt stress.	PLoS ONE	9(1)	e87110	2014	GA2OX5	OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32
37869	24486766	Aya K., Hobo T., Sato-Izawa K., Ueguchi-Tanaka M., Kitano H., Matsuoka M.	A Novel AP2-Type Transcription Factor, SMALL ORGAN SIZE1, Controls Organ Size Downstream of an Auxin Signaling Pathway.	Plant Cell Physiol.	55(5)	897-912	2014	TUB6,_,_,XTH20,PLT9,PHI1,RPA1,ERF142,ARF1	OsTUB6, TUBB6,,OsARGOS ,OsXTH20, XET32,OsPLT9, AP2/EREBP#137, AP2/EREBP137, OsANT,OsPHI-1, PHI-1,OsRPA1, OsRPA70b, RPA70b,OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1,OsARF1, arf1, OsARF23, ARF23
37870	24667379	Xiong H., Li J., Liu P., Duan J., Zhao Y., Guo X., Li Y., Zhang H., Ali J., Li Z.	Overexpression of OsMYB48-1, a Novel MYB-Related Transcription Factor, Enhances Drought and Salinity Tolerance in Rice.	PLoS ONE	9(3)	e92913	2014	_,RAB16D,_,SAPK6,NCED2,P5CS,RAB16C,RAB16A,LEA3-1,NCED3,PP2C1	OsMYB48, MYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59,rab21, OsLEA26, Rab16D, OsRab16,P5CS2, OsP5CS2, OsALDH18B2, ALDH18B2 ,OsSAPK6, OSRK1,OSNCED2, OsNCED2, OsNCED5, NCED5,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,rab21, OsLEA27, rab16C,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108
37871	24410960	Zhou G., Ren N., Qi J., Lu J., Xiang C., Ju H., Cheng J., Lou Y.	The 9-lipoxygenase Osr9-LOX1 interacts with the 13-lipoxygenase-mediated pathway to regulate resistance to chewing and piercing-sucking herbivores in rice.	Physiol Plant			2014	R9-LOX1	Osr9-LOX1, OsLOX3, LOX3
37872	24413763	Ou J., Guo Z., Shi J., Wang X., Liu J., Shi B., Guo F., Zhang C., Yang D.	Transgenic rice endosperm as a bioreactor for molecular pharming.	Plant Cell Rep.	33(4)	585-94	2014		
37873	24410953	Kaur C., Mustafiz A., Sarkar A.K., Ariyadasa T.U., Singla-Pareek SL., Sopory S.K.	Expression of abiotic stress inducible ETHE1-like protein from rice is higher in roots and is regulated by calcium.	Physiol Plant			2014	GLYII-2,GLYII-1,GLYII-3	OsGLYII2, GLYII2, OsGLYII-2,OsGLYII1, GLYII1, OsETHE1, ETHE1, OsGLYII-1,OsGLYII3, GLYII3, gly II, OsGLYII-3
37874	24381099	Wu C.S., Chen D.Y., Chang C.F., Li M.J., Hung K.Y., Chen L.J., Chen P.W.	The promoter and the 5'-untranslated region of rice metallothionein OsMT2b gene are capable of directing high-level gene expression in germinated rice embryos.	Plant Cell Rep.	33(5)	793-806	2014	MT2B	OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
37875	24492003	Kumagai S., Suzuki T., Tezuka K., Satoh-Nagasawa N., Takahashi H., Sakurai K., Watanabe A., Fujimura T., Akagi H.	Functional analysis of the C-terminal region of the vacuolar cadmium-transporting rice OsHMA3.	FEBS Lett.	588(5)	789-94	2014	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3
37876	24498911	Liu H., Bayer M., Druka A., Russell J.R., Hackett C.A., Poland J., Ramsay L., Hedley P.E., Waugh R.	An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley.	BMC Genomics	15	104	2014		
37877	24733018	Shao F., Lu S.	Identification, Molecular Cloning and Expression Analysis of Five RNA-Dependent RNA Polymerase Genes in Salvia miltiorrhiza.	PLoS ONE	9(4)	e95117	2014		
37878	24647160	Cai Q., Yuan Z., Chen M., Yin C., Luo Z., Zhao X., Liang W., Hu J., Zhang D.	Jasmonic acid regulates spikelet development in rice.	Nat Commun	5	3476	2014	_,_,EG2,EG1,LHS1	OsbHLH009, bHLH009, OsMYC2, MYC2,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,eg1, GY1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
37879	24551849	Macovei A., Garg B., Raikwar S., Balestrazzi A., Carbonera D., Buttafava A., Bremont J.F., Gill S.S., Tuteja N.	Synergistic exposure of rice seeds to different doses of gamma-ray and salinity stress resulted in increased antioxidant enzyme activities and gene-specific modulation of TC-NER pathway.	Biomed Res Int	2014	676934	2014	_,_,_,_	OsTFIIS,OsXPB2,OsXPD, XPD ,OsTFIIS-like gene, OsMed26_3, Med26_3
37880	24709840	Zhou Y., Liu L., Huang W., Yuan M., Zhou F., Li X., Lin Y.	Overexpression of OsSWEET5 in Rice Causes Growth Retardation and Precocious Senescence.	PLoS ONE	9(4)	e94210	2014	TMT1,TMT2,SAUR39,IAA31,SUT2,SUT1,IAA24,PIN1B,SWEET5,GH3-2	OsTMT1,OsTMT2,OsSAUR39,OsIAA3, OsIAA31,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT1, OsSUT2,OsIAA24,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsSWEET5,OsGH3-2, OsGH3.2, GH3.2
37881	24614601	Ohta M., Takaiwa F.	Emerging features of ER resident J-proteins in plants.	Plant Signal Behav	9(2)	e28194	2014	_,_,_,_,_,_,_,_,_	OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsDjB6, OsERdj3B,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsDjC16, OsP58A,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsDjC15, OsP58B,OsDjC79, OsERdj7,OsDjC43, OsERdj2,OsERdj3A, TMS1
37882	24597623	Wang S., Xu Y., Li Z., Zhang S., Lim J.M., Lee K.O., Li C., Qian Q., Jiang D.A., Qi Y.	OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.).	Plant J.	78(4)	632-45	2014	_,IAA1,MDR13,MDR6,SAUR39	OsMOGS,OsIAA1, OsIAA4,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2,OsSAUR39
37883	24289830	Gong X., Su Q., Lin D., Jiang Q., Xu J., Zhang J., Teng S., Dong Y.	The rice OsV4 encoding a novel pentatricopeptide repeat protein is required for chloroplast development during the early leaf stage under cold stress.	J Integr Plant Biol	56(4)	400-10	2014	_	OsV4
37884	24641694	Du H., Wu N., Cui F., You L., Li X., Xiong L.	A homolog of ETHYLENE OVERPRODUCER, osetol1, differentially modulates drought and submergence tolerance in rice.	Plant J.	78(5)	834-49	2014	_,_,_,_,AMY3D	OsETOL2,OsETOL3,OsACS2,OsETOL1, OsSTA97, ETOL1, STA97,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3
37885	24401104	Ye N., Yang G., Chen Y., Zhang C., Zhang J., Peng X.	Two hydroxypyruvate reductases encoded by OsHPR1 and OsHPR2 are involved in photorespiratory metabolism in rice.	J Integr Plant Biol	56(2)	170-80	2014	_,_	OsHPR1, HPR1,OsHPR2, HPR2, OsHPR2-1, OsHPR2-2
37886	24464125	Liang W.H., Wang H.H., Li H., Wang J.J., Yang D.D., Hao Y.F., Li J.J., Lou C., Lin Q.T., Hou C.Q.	Isolation and characterization of OsMY1, a putative partner of OsRac5 from Oryza sativa L.	Mol. Biol. Rep.	41(3)	1829-36	2014	_,RAC5	OsMY1,Osrac5, OsRac5, RACD, OsRacD, OsRACD
37887	24525904	Lee C., Teng Q., Zhong R., Yuan Y., Ye Z.H.	Functional roles of rice glycosyltransferase family GT43 in xylan biosynthesis.	Plant Signal Behav	9(1)	e27809	2014	_,_,_,_,_,_,_,_,_,_	OsIRX14, IRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsGT43I, OsGT43B,OsGT43D,OsGT43G,OsGT43E,OsGT43H,OsGT43B,OsIRX9, IRX9, OsGT43C/OsIRX9, OsGT43C,OsIRX9L, OsGT43F/OsIRX9L, OsGT43F,OsGT43A, GT43A
37888	24528386	Xia J., Yamaji N., Che J., Shen R.F., Ma J.F.	Normal root elongation requires arginine produced by argininosuccinate lyase in rice.	Plant J.	78(2)	215-26	2014	ASL1	OsASL1, OsASL1.1, OsASL1.2, OsAL1, red1
37889	24661284	Mustafiz A., Ghosh A., Tripathi A.K., Kaur C., Ganguly A.K., Bhavesh N.S., Tripathi J.K., Pareek A., Sopory S.K., Singla-Pareek SL.	A unique Ni(2+) -dependent and methylglyoxal-inducible rice glyoxalase I possesses a single active site and functions in abiotic stress response.	Plant J.	78(6)	951-63	2014	GLYI-11	OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33
37890	24450597	Wan L., Wang X., Li S., Hu J., Huang W., Zhu Y.	Overexpression of OsKTN80a, a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa.	J Integr Plant Biol			2014	_,_,_,_	OsWD40-26, OsKTN80c,OsWD40-179, OsKTN80a,OsKTN80b,OsKTN60
37891	24399239	Chen X., Wang Y., Lv B., Li J., Luo L., Lu S., Zhang X., Ma H., Ming F.	The NAC Family Transcription Factor OsNAP Confers Abiotic Stress Response Through the ABA Pathway.	Plant Cell Physiol.	55(3)	604-19	2014	PP2C1,_,_,_,ERF3,ERF91,NAC58,SALT,DREB1A	OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108,OsMYB2, MYB2,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
37892	24596329	Liu H., Guo S., Xu Y., Li C., Zhang Z., Zhang D., Xu S., Zhang C., Chong K.	OsmiR396d-regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to their Targets OsJMJ706 and OsCR4.	Plant Physiol.	165(1)	160-74	2014	GRF10,_,_,_,GRF6,MADS47,_,_,DH1,MIR396D	OsGRF10,JMJ706, OsJMJ706,OsCR4,OsGIF2,OsGRF6,OsMADS47, OsMDP1, MDP, MDP1,OsGIF3, GIF3, OsGIF1, GIF1, MKB3,OsGIF1, GIF1,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16,miR396d, osa-miR396d, osa-MIR396d
37893	24532604	Kuijt S.J., Greco R., Agalou A., Shao J., 't Hoen CC., Overn?s E., Osnato M., Curiale S., Meynard D., van Gulik R., Maraschin Sde F., Atallah M., de Kam RJ., Lamers G.E., Guiderdoni E., Rossini L., Meijer A.H., Ouwerkerk P.B.	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors[W].	Plant Physiol.	164(4)	1952-66	2014	GRF10,GRF3,OSH1,OSH15,GRF5,GS2,OSKN2	OsGRF10,OsGRF3,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsGRF5,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2
37894	0	Imam J.a b, Alam S.a, Mandal N.P.a, Variar M.a, Shukla P.b	Molecular screening for identification of blast resistance genes in North East and Eastern Indian rice germplasm (Oryza sativa L.) with PCR based makers	Euphytica	196	199-211	2014	PIKP,PITA,PI9,PIKH,PIB,PIZ,PIK,PIZT	Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
37895	0	Zhang S.a, Zheng J.b c, Liu B.a, Peng S.b d, Leung H.b, Zhao J.a, Wang X.a, Yang T.a, Huang Z.a	Identification of QTLs for cold tolerance at seedling stage in rice (Oryza sativa L.) using two distinct methods of cold treatment	Euphytica	195	95-104	2014		
37896	24361205	Jiang G.a b, Zeng J.a, He Y.a	Analysis of quantitative trait loci affecting chlorophyll content of rice leaves in a double haploid population and two backcross populations	Gene	536	287-295	2014		
37897	24315823	Mondal T.K., Ganie S.A.	Identification and characterization of salt responsive miRNA-SSR markers in rice (oryza sativa)	Gene	535	204-209	2014	MIR167A,MIR167B,miR159B,MIR171I,MIR1866,MIR396A,MIR166D,MIR167F,MIR169N,MIR156G,MIR408,MIR172B,MIR171	miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p,miR167b, osa-miR167b,OsmiR159b, osa-MIR159b,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,miR1866, osa-miR1866, osa-MIR1866,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR167f, osa-miR167f, osa-miRNA167f ,miR169n, osa-miR169n, osa-MIR169n,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a
37900	0	Ali M.P.a, Chowdhury T.R.b	Tagging and mapping of genes and QTLs of Nilaparvata lugens resistance in rice	Euphytica	195	1-30	2014		
37901	0	Wang J.a, Wei L.b, Zheng T.c, Zhao X.c, Ali J.d, Xu J.c, Li Z.c	Simple sequence repeat markers reveal multiple loci governing grain-size variations in a japonica rice (Oryza sativa L.) mutant induced by cosmic radiation during space flight	Euphytica	196	225-236	2014		
37904	24395781	Hayafune M.a, Berisio R.b, Marchetti R.c, Silipo A.c, Kayama M.a, Desaki Y.a, Arima S.a, Squeglia F.b, Ruggiero A.b, Tokuyasu K.d, Molinaro A.c, Kaku H.a, Shibuya N.a	Chitin-induced activation of immune signaling by the rice receptor CEBiP relies on a unique sandwich-type dimerization	Proc. Natl. Acad. Sci. U.S.A.	111	E404-E413	2014	CEBiP,_	CEBIP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9
37906	0	Serrat X.a b, Cardona M.a, Gil J.a, Brito A.M.a, Moysset L.b, Nogu?s S.b, Lalanne E.a	A Mediterranean japonica rice (Oryza sativa) cultivar improvement through anther culture	Euphytica	195	31-44	2014		
37907	0	Wan B.a, Zha Z.a, Li J.a, Xia M.a, Du X.a, Lin Y.b, Yin D.a	Development of elite rice restorer lines in the genetic background of R022 possessing tolerance to brown planthopper, stem borer, leaf folder and herbicide through marker-assisted breeding	Euphytica	195	129-142	2014	BPH15,BPH14	Bph15 (Qbp2), Bph15, Qbp2, qBPH-4,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
37908	0	Ying Y.a, Zhu H.b, Ye G.c, Zhang G.b, Li L.d, Liu G.b c	Detection of QTL on panicle number in rice (Oryza sativa L.) under different densities with single segment substitution lines	Euphytica	195	355-368	2014		
37909	24406632	Adachi M.a, Hasegawa T.b, Fukayama H.c, Tokida T.d, Sakai H.b, Matsunami T.e, Nakamura H.f, Sameshima R.g i, Okada M.h	Soil and water warming accelerates phenology and down-regulation of leaf photosynthesis of rice plants grown under free-air CO2 enrichment (FACE)	Plant and Cell Physiology	55	370-380	2014		
37910	24554078	Wei L.a b, Gu L.a, Song X.a, Cui X.a b, Lu Z.a, Zhou M.a, Wang L.a, Hu F.c, Zhai J.d e, Meyers B.C.d e, Cao X.a	Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice	Proc. Natl. Acad. Sci. U.S.A.	111	3877-3882	2014	_,CYP76M7,RDR2,AGO4B,_,CYP99A3,DCL3A,EUI1,AGO4A,KS7,MIR820A,MIR820B,MIR820C,CPS4,BRD1,DRM2	,OsCYP76M7, CYP76M10, OsCYP76M10,OsRDR2,OsAGO4b, AGO4-1 ,OsGSR1, GASR7,,OsDCL3a,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsAGO4a, AGO4-2,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsDRM2, osdrm2, DRM2-1
37911	24443497	Chen C.P.a c d, Sakai H.a, Tokida T.b, Usui Y.a, Nakamura H.b, Hasegawa T.a	Do the rich always become richer? Characterizing the leaf physiological response of the high-yielding rice cultivar takanari to free-air CO2 enrichment	Plant and Cell Physiology	55	381-391	2014		
37912	24488961	Tian D.a, Wang J.a, Zeng X.a, Gu K.a, Qiu C.a, Yang X.a, Zhou Z.a, Goh M.a, Luo Y.a, Murata-Hori M.a, White F.F.c, Yin Z.a b	The Rice TAL effector-dependent resistance protein Xa10 triggers cell death and calcium depletion in the endoplasmic reticulum	Plant Cell	26	497-515	2014	XA10	Xa10, Xa-10
37913	24092883	Kaneko K, Inomata T, Masui T, Koshu T, Umezawa Y, Itoh K, Pozueta-Romero J, Mitsui T	Nucleotide pyrophosphatase/phosphodiesterase 1 exerts a negative effect on starch accumulation and growth in rice seedlings under high temperature and CO2 concentration conditions	Plant and Cell Physiology	55	320-332	2014	NPP1,PAP1B,PAP1A,PAP1C,PAP1D,PAP27A	OsNPP1, OsPAP27b, PAP27B,OsPAP1b, NPP2, OsNPP2,OsPAP1a, NPP3, OsNPP3,OsPAP1c, NPP4, OsNPP4,OsPAP1d, NPP5, OsNPP5,OsPAP27a, NPP6, OsNPP6
37914	24488962	Ren Y.a b, Wang Y.a, Liu F.a, Zhou K.a, Ding Y.c, Zhou F.a, Wang Y.b, Liu K.a, Gan L.b, Ma W.b, Han X.a, Zhang X.b, Guo X.b, Wu F.b, Cheng Z.b, Wang J.b, Lei C.b, Lin Q.b, Jiang L.a, Wu C.b, Bao Y.d, Wang H.b, Wan J.a b	glutelin precursor ACCUMULATION3 encodes a regulator of post-golgi vesicular traffic essential for vacuolar protein sorting in rice endosperm	Plant Cell	26	410-425	2014	_,GLUP4,GLUP6	GPA3,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF
37915	0	Bian J.a, Li C.a, He H.a, Shi H.a, Yan S.b	Identification and analysis of QTLs for grain quality traits in rice using an introgression lines population	Euphytica	195	83-93	2014		
37917	24464483	Cardoso C.a, Zhang Y.a, Jamil M.a j, Hepworth J.b, Charnikhova T.a k, Dimkpa S.O.N.c, Meharg C.d, Wright M.H.e, Liu J.a l, Meng X.f, Wang Y.f, Li J.f, McCouch S.R.e, Leyser O.b g, Price A.H.c, Bouwmeester H.J.a h, Ruyter-Spira C.a i	Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs	Proc. Natl. Acad. Sci. U.S.A.	111	2379-2384	2014	SLB1,SLB2	OsSLB1,CYP711A1, OsCYP711A1
37918	0	Chung P., Hsiao H.H., Chen H.J., Chang C.W., Wang S.J.	Influence of temperature on the expression of the rice sucrose transporter 4 gene, OsSUT4, in germinating embryos and maturing pollen	Acta Physiologiae Plantarum	36	217-229	2014	SUT4	OsSUT4(t), OsSUT4
37919	0	Wang L.a, Ma F.a, Xu S.b, Zheng T.c, Wang R.b, Chen H.d e, Shen W.a	Cloning and characterization of a Heme oxygenase-2 gene from rice (Oryza sativa L.), and its expression analysis in response to some abiotic stresses	Acta Physiologiae Plantarum	36	893-902	2014	YLC2	OsHO2, HO2, OsHO-2, HO-2
37920	24330191	Toriba T.a b, Hirano H.Y.a	The DROOPING LEAF and OsETTIN2 genes promote awn development in rice	Plant Journal	77	616-626	2014	ARF3,_,ARF14,SHL2,_,DL	OsARF3, ETT3, Os ETT3, OsETT3,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,OsARF14, OsETT4, ETT4,shl2, SHL2, sh2, OsRDR6, RDR6,OsARF2, ARF2, OsETT2, ETT2, ARF3a,DL, dl(lop), lop, dl, dl1
37921	24388520	Christoff A.P.a, Turchetto-Zolet A.C.a, Margis R.a b	Uncovering legumain genes in rice	Plant Science	215-216	100-109	2014	GLUP3,_,_,_,WRKY86	glup3(esp7), esp7, glup3, OsVPE1, VPE1, OsaLeg3,OsVPE2, VPE2, OsaLeg1, aLeg1,OsVPE3, VPE3, REP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,OsVPE4, VPE4, OsaLeg4, Leg4,OsWRKY86, OsaLeg5, Leg5
37922	24467907	Matsuno K., Fujimura T.	Induction of phytic acid synthesis by abscisic acid in suspension-cultured cells of rice	Plant Science	217-218	152-157	2014	ITPK1,ITPK6,ITPK3,ITPK4,MRP13,_,_,INO1,LPA1,_	OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,OsITPK6, OsITP5/6K-6, ITP5/6K-6,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsABCC13, OsMRP13, OsMRP5,OsMIK, LPA,OsIPK1, IPK1,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3,OsIPK2, IPK2, IP6K
37923	24372518	Lin X.a b, Wu F.a, Du X.a, Shi X.a, Liu Y.a, Liu S.a, Hu Y.a, Theisen G.c, Meng Z.a	The pleiotropic SEPALLATA-like gene OsMADS34 reveals that the 'empty glumes' of rice (Oryza sativa) spikelets are in fact rudimentary lemmas	New Phytologist	202	689-702	2014	PAP2	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 
37924	24491113	Zhang L.a, Hu B.b c, Li W.a, Che R.b c, Deng K.a, Li H.b c, Yu F.a, Ling H.d, Li Y.a, Chu C.b c	OsPT2, a phosphate transporter, is involved in the active uptake of selenite in rice	New Phytologist	201	1183-1191	2014	PT6,PT2,PT1,PT4,PT8,LTN1	OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT8, PHT1-8, OsPht1;8, Pht1;8,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
37925	0	Hu T.a b, Yang Y.a, Tan L.a, Yang J.b, Wu Y.b	Molecular characteristics, recombinant expression and activity detection of OsGSTL1 from rice	Brazilian Archives of Biology and Technology	57	70-76	2014	GSTL1	OsGSTL1
37926	24105034	Liu T.a, Kim D.W.a, Niitsu M.b, Berberich T.c, Kusano T.a	Oryza sativa polyamine oxidase 1 back-converts tetraamines, spermine and thermospermine, to spermidine	Plant Cell Rep.	33	143-151	2014	PAO1,PAO5,PAOB,PAO7,PAO3,PAO4,PAOA	OsPAO1, OsAO4, AO4,OsPAO5, OsAO2, AO2,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsPAO7, OsPAO3, PAO3,OsPAO3, OsAO3, AO3,OsPAO4, OsAO1, AO1,PAOa, OsPAO2, PAO2, OsPAOa
37927	0	Rodr?guez-Valent?n R.a b, Campos F.a, Battaglia M.a, Sol?rzano R.M.a, Rosales M.A.a c, Covarrubias A.A.a	Group 6 Late Embryogenesis Abundant (LEA) Proteins in Monocotyledonous Plants: Genomic Organization and Transcript Accumulation Patterns in Response to Stress in Oryza sativa	Plant Molecular Biology Reporter	32	198-208	2014	_,_	GSC 381, OsLEA6,OsHsp90, HSP90
37929	24385091	Xu Y.a, Wang Y.a, Long Q.a, Huang J.a, Wang Y.a, Zhou K.a, Zheng M.a, Sun J.a, Chen H.a, Chen S.a, Jiang L.a, Wang C.a, Wan J.a b	Overexpression of OsZHD1, a zinc finger homeodomain class homeobox transcription factor, induces abaxially curled and drooping leaf in rice	Planta	239	803-816	2014	_,_,_,_,_,_,_,_,_,_,_	OsZHD5,OsZHD3,OsZHD4,OsZHD6,OsZHD7,OsZHD8,OsZHD9,OsZHD11,OsZHD10,OsZHD2, ZHD2,OsZHD1, ZHD1
37930	0	Zhou C., Chen R.J., Gao X.L., Li L.H., Xu Z.J.	Heterologous expression of a rice RNA-recognition motif gene OsCBP20 in escherichia coli confers abiotic stress tolerance	Plant OMICS	7	28-34	2014	DU3	du3, OsCBP20, OsCBP20/du3, CBP20
37931	23621683	Toyomasu T.a, Usui M.a, Sugawara C.a, Otomo K.a, Hirose Y.a, Miyao A.b, Hirochika H.b, Okada K.c, Shimizu T.c j, Koga J.d, Hasegawa M.e, Chuba M.f, Kawana Y.g, Kuroda M.h, Minami E.i, Mitsuhashi W.a, Yamane H.c k	Reverse-genetic approach to verify physiological roles of rice phytoalexins: Characterization of a knockdown mutant of OsCPS4 phytoalexin biosynthetic gene in rice	Physiol Plant	150	55-62	2014	KS4,CPS4	OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4
37932	24033451	Svyatyna K.a, Jikumaru Y.b, Brendel R.a, Reichelt M.c, Mith?fer A.d, Takano M.e, Kamiya Y.b, Nick P.a, Riemann M.a	Light induces jasmonate-isoleucine conjugation via OsJAR1-dependent and -independent pathways in rice	Plant, Cell and Environment	37	827-839	2014		
37933	24441161	Bao Z.a, Watanabe A.a, Sasaki K.a, Okubo T.a, Tokida T.b, Liu D.c, Ikeda S.a d, Imaizumi-Anraku H.e, Asakawa S.c, Sato T.a, Mitsui H.a, Minamisawa K.a	A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input	Appl. Environ. Microbiol.	80	1995-2003	2014	DMI3	OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
37936	23723154	Liu F., Ren Y., Wang Y., Peng C., Zhou K., Lv J., Guo X., Zhang X., Zhong M., Zhao S., Jiang L., Wang H., Bao Y., Wan J.	OsVPS9A functions cooperatively with OsRAB5A to regulate post-Golgi dense vesicle-mediated storage protein trafficking to the protein storage vacuole in rice endosperm cells.	Mol Plant	6(6)	1918-32	2013	GLUP6,GLUP4	glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a
37937	20202174	Yong-Fang Li, Zheng Y., Charles Addo-Quaye, Zhang L., Saini A., Jagadeeswaran G., Michael J Axtell, Zhang W., Sunkar R.	Transcriptome-wide identification of microRNA targets in rice.	Plant J.	62(5)	742-59	2010	GRF10,GRF6,MIR396D	OsGRF10,OsGRF6,miR396d, osa-miR396d, osa-MIR396d
37938	24203183	M Iwahashi, M Nakazono, A Kanno, K Sugino, T Ishibashi, A Hirai	Genetic and physical maps and a clone bank of mitochondrial DNA from rice.	Theor. Appl. Genet.	84(3-4)	275-9	1992	_,RPS12,_,_,NAD3,26S  rRNA,_,_,18S  rRNA,_	cox2, coxII,rps12,atp6, N-atp6, B-ATP6, B-atp6, atp6-1,atpA, atpA.p,nad3,rrn26,coxI, COX1, cox1-1, cox1,cob, cob-1, cob-like,rrn18,atp9, RMtATP9, aatp9
37939	12609030	Nakashita H., Yasuda M., Nitta T., Asami T., Fujioka S., Arai Y., Sekimata K., Takatsuto S., Yamaguchi I., Yoshida S.	Brassinosteroid functions in a broad range of disease resistance in tobacco and rice.	Plant J.	33(5)	887-98	2003	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
37940	24231976	T Kumamaru, H Satoh, N Iwata, T Omura, M Ogawa, K Tanaka	Mutants for rice storage proteins : 1. Screening of mutants for rice storage proteins of protein bodies in the starchy endosperm.	Theor. Appl. Genet.	76(1)	11-6	1988	ESP4,ESP2,ESP1,ESP3	Esp4, 10/16-H,esp2(rsp2), rsp2, esp2, PDIL1-1,esp1(rsp1), rsp1, esp1,esp3(rsp3), rsp3, esp3
37941	21689369	Kovalchuk N., Wu W., Eini O., Bazanova N., Pallotta M., Shirley N., Singh R., Ismagul A., Eliby S., Johnson A., Langridge P., Lopato S.	The scutellar vascular bundle-specific promoter of the wheat HD-Zip IV transcription factor shows similar spatial and temporal activity in transgenic wheat, barley and rice.	Plant Biotechnol. J.	10(1)	43-53	2012		
37942	21498073	Park J.Y., Ike M., Arakane M., Shiroma R., Li Y., Arai-Sanoh Y., Kondo M., Tokuyasu K.	DiSC (direct saccharification of culms) process for bioethanol production from rice straw.	Bioresour. Technol.	102(11)	6502-7	2011		
37943	21140152	Okuzaki A., Konagaya K., Nanasato Y., Tsuda M., Tabei Y.	Estrogen-inducible GFP expression patterns in rice (Oryza sativa L.).	Plant Cell Rep.	30(4)	529-38	2011		
37944	21267709	Chen X., Hedley P.E., Morris J., Liu H., Niks R.E., Waugh R.	Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization.	Theor. Appl. Genet.	122(7)	1375-83	2011		
37945	21694767	Filichkin S.A., Breton G., Priest H.D., Dharmawardhana P., Jaiswal P., Fox S.E., Michael T.P., Chory J., Kay S.A., Mockler T.C.	Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.	PLoS ONE	6(6)	e16907	2011		
37946	21635781	Nunes C.C., Gowda M., Sailsbery J., Xue M., Chen F., Brown D.E., Oh Y., Mitchell T.K., Dean R.A.	Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae.	BMC Genomics	12	288	2011		
37948	21323774	Sakai H., Ikawa H., Tanaka T., Numa H., Minami H., Fujisawa M., Shibata M., Kurita K., Kikuta A., Hamada M., Kanamori H., Namiki N., Wu J., Itoh T., Matsumoto T., Sasaki T.	Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysis	Plant Journal	66	796-805	2011		
37949	22319137	Yang C.C., Kawahara Y., Mizuno H., Wu J., Matsumoto T., Itoh T.	Independent Domestication of Asian Rice Followed by Gene Flow from japonica to indica.	Mol. Biol. Evol.	29(5)	1471-9	2012		
37952	21465186	Bushman B.S., Larson S.R., Tuna M., West M.S., Hernandez A.G., Vullaganti D., Gong G., Robins J.G., Jensen K.B., Thimmapuram J.	Orchardgrass (Dactylis glomerata L.) EST and SSR marker development, annotation, and transferability	Theoretical and Applied Genetics	123	119-129	2011		
37953	21621873	Tsaftaris A., Pasentsis K., Makris A., Darzentas N., Polidoros A., Kalivas A., Argiriou A.	The study of the E-class SEPALLATA3-like MADS-box genes in wild-type and mutant flowers of cultivated saffron crocus (Crocus sativus L.) and its putative progenitors	J. Plant Physiol.	168	1675-1684	2011		
37954	21606319	Ficklin S.P., Feltus F.A.	Gene coexpression network alignment and conservation of gene modules between two grass species: Maize and rice	Plant Physiol.	156	1244-1256	2011		
37955	21216747	Nagamura Y., Antonio B.A., Sato Y., Miyao A., Namiki N., Yonemaru J.I., Minami H., Kamatsuki K., Shimura K., Shimizu Y., Hirochika H.	Rice TOGO browser: A platform to retrieve integrated information on rice functional and applied genomics	Plant and Cell Physiology	52	230-237	2011		
37958	21665325	Kou H.P., Li Y., Song X.X., Ou X.F., Xing S.C., Ma J., von Wettstein D., Liu B.	Heritable alteration in DNA methylation induced by nitrogen-deficiency stress accompanies enhanced tolerance by progenies to the stress in rice (Oryza sativa L.)	J. Plant Physiol.	168	1685-1693	2011		
37959	0	Iftekharuddaula K.M., Newaz M.A., Salam M.A., Ahmed H.U., Mahbub M.A.A., Septiningsih E.M., Collard B.C.Y., Sanchez D.L., Pamplona A.M., Mackill D.J.	Rapid and high-precision marker assisted backcrossing to introgress the Sub1 QTL into BR11, the rainfed lowland rice mega variety of Bangladesh	Euphytica	178	83-97	2011		
37960	0	Kim S.I., Tai T.H.	Evaluation of seedling cold tolerance in rice cultivars: A comparison of visual ratings and quantitative indicators of physiological changes	Euphytica	178	437-447	2011		
37961	0	Srinivasachary, Willocquet L., Savary S.	Resistance to rice sheath blight (Rhizoctonia solani K[hn) [(teleomorph: Thanatephorus cucumeris (A.B. Frank) Donk.] disease: Current status and perspectives	Euphytica	178	1-22	2011		
37962	0	Zhang X., Zhang G., Guo L., Wang H., Zeng D., Dong G., Qian Q., Xue D.	Identification of quantitative trait loci for Cd and Zn concentrations of brown rice grown in Cd-polluted soils	Euphytica	180	173-179	2011		
37963	21353327	Zhou Q., Wang L., Cai X., Wang D., Hua X., Qu L., Lin J., Chen T.	Net sodium fluxes change significantly at anatomically distinct root zones of rice (Oryza sativa L.) seedlings	J. Plant Physiol.	168	1249-1255	2011		
37964	0	Ayliffe M., Jin Y., Kang Z., Persson M., Steffenson B., Wang S., Leung H.	Determining the basis of nonhost resistance in rice to cereal rusts	Euphytica	179	33-40	2011		
37965	21571672	Movahedi S., van De Peer Y., Vandepoele K.	Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in arabidopsis and rice	Plant Physiol.	156	1316-1330	2011		
37966	0	Xiao Y., Pan Y., Luo L., Zhang G., Deng H., Dai L., Liu X., Tang W., Chen L., Wang G.L.	Quantitative trait loci associated with seed set under high temperature stress at the flowering stage in rice (Oryza sativa L.)	Euphytica	178	331-338	2011		
37967	0	Fu D., Chen L., Yu G., Liu Y., Lou Q., Mei H., Xiong L., Li M., Xu X., Luo L.	QTL mapping of sheath blight resistance in a deep-water rice cultivar	Euphytica	180	209-218	2011		
37968	0	Kovi M.R., Bai X., Mao D., Xing Y.	Impact of seasonal changes on spikelets per panicle, panicle length and plant height in rice (Oryza sativa L.)	Euphytica	179	319-331	2011		
37969	20857082	Nelson J.C., Mcclung A.M., Fjellstrom R.G., Moldenhauer K.A.K., Boza E., Jodari F., Oard J.H., Linscombe S., Scheffler B.E., Yeater K.M.	Mapping QTL main and interaction influences on milling quality in elite US rice germplasm	Theoretical and Applied Genetics	122	291-309	2011		
37970	0	Wang Z., Wang J., Bao Y., Wu Y., Zhang H.	Quantitative trait loci controlling rice seed germination under salt stress	Euphytica	178	297-307	2011		
37971	24178570	Komiya R., Nonomura K.	Isolation and bioinformatic analyses of small RNAs interacting with germ cell-specific argonaute in rice.	Methods Mol. Biol.	1093	235-45	2014		
37972	24570855	Thilakarathne B.L., Rajagopalan U.M., Kadono H., Yonekura T.	An optical interferometric technique for assessing ozone induced damage and recovery under cumulative exposures for a Japanese rice cultivar.	Springerplus	3	89	2014		
37973	24586255	Okuno A., Hirano K., Asano K., Takase W., Masuda R., Morinaka Y., Ueguchi-Tanaka M., Kitano H., Matsuoka M.	New approach to increasing rice lodging resistance and biomass yield through the use of high gibberellin producing varieties.	PLoS ONE	9(2)	e86870	2014		
37974	24454308	Sasaya T., Nakazono-Nagaoka E., Saika H., Aoki H., Hiraguri A., Netsu O., Uehara-Ichiki T., Onuki M., Toki S., Saito K., Yatou O.	Transgenic strategies to confer resistance against viruses in rice plants.	Front Microbiol	4	409	2014		
37975	24635777	Komiya R., Ohyanagi H., Niihama M., Watanabe T., Nakano M., Kurata N., Nonomura K.I.	Rice germline-specific Argonaute MEL1 protein binds to phasiRNAs generated from more than 700 lincRNAs.	Plant J.	78(3)	385-97	2014	SHL2,MIR2118F,SHO1,MEL1	shl2, SHL2, sh2, OsRDR6, RDR6,miR2118f, osa-miR2118f, osa-MIR2118f,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c 
37976	24709155	Taniguchi S., Miyoshi S., Tamaoki D., Yamada S., Tanaka K., Uji Y., Tanaka S., Akimitsu K., Gomi K.	Isolation of jasmonate-induced sesquiterpene synthase of rice: Product of which has an antifungal activity against Magnaporthe oryzae.	J. Plant Physiol.	171(8)	625-32	2014		
37977	24569847	Sakata T., Oda S., Tsunaga Y., Shomura H., Kawagishi-Kobayashi M., Aya K., Saeki K., Endo T., Nagano K., Kojima M., Sakakibara H., Watanabe M., Matsuoka M., Higashitani A.	Reduction of gibberellin by low temperature disrupts pollen development in rice.	Plant Physiol.	164(4)	2011-9	2014		
37978	24649396	Abe T.K., Taniguchi M.	Identification of myo-inositol hexakisphosphate (IP6) as a beta-secretase 1 (BACE1) inhibitory molecule in rice grain extract and digest.	FEBS Open Bio	4	162-7	2014		
37979	24466017	Arai-Kichise Y., Shiwa Y., Ebana K., Shibata-Hatta M., Yoshikawa H., Yano M., Wakasa K.	Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.	PLoS ONE	9(1)	e86312	2014		
37980	24406628	Tsutsumi K., Konno M., Miyazawa S., Miyao M.	Sites of action of elevated CO2 on leaf development in rice: discrimination between the effects of elevated CO2 and nitrogen deficiency.	Plant Cell Physiol.	55(2)	258-68	2014		
37981	24654769	Hanaoka H., Uraguchi S., Takano J., Tanaka M., Fujiwara T.	OsNIP3;1, a rice boric acid channel, regulates boron distribution and is essential for growth under boron-deficient conditions.	Plant J.	78(5)	890-902	2014		
37982	24535433	Yamauchi T., Johzuka-Hisatomi Y., Terada R., Nakamura I., Iida S.	The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice.	Plant Mol. Biol.	85(3)	219-32	2014	MET1B,MET1A	OsMET1b, OsMET1-2, MET1b, MET1,OsMET1a, OsMET1-1, MET1a, MET1-1
37983	24243191	Mutou C., Tanaka K., Ishikawa R.	DNA extraction from rice endosperm (including a protocol for extraction of DNA from ancient seed samples).	Methods Mol. Biol.	1099	7-15	2014		
37984	24410502	Nakamura R., Nakamura R., Adachi R., Hachisuka A., Yamada A., Ozeki Y., Teshima R.	Differential analysis of protein expression in RNA-binding-protein transgenic and parental rice seeds cultivated under salt stress.	J. Proteome Res.	13(2)	489-95	2014	_,_	RA17, RAP, RAG1, OsEnS-97,RAG2, RA14B, RA14, OsEnS-98
37985	24506679	Kulichikhin K., Yamauchi T., Watanabe K., Nakazono M.	Biochemical and molecular characterization of rice (Oryza sativa?L.) roots forming a barrier to radial oxygen loss.	Plant Cell Environ.			2014		
37986	24591053	Adachi S., Baptista L.Z., Sueyoshi T., Murata K., Yamamoto T., Ebitani T., Ookawa T., Hirasawa T.	Introgression of two chromosome regions for leaf photosynthesis from an indica rice into the genetic background of a japonica rice.	J. Exp. Bot.	65(8)	2049-56	2014		
37987	24526015	Okamoto M., Higuchi-Takeuchi M., Shimizu M., Shinozaki K., Hanada K.	Substantial expression of novel small open reading frames in Oryza sativa.	Plant Signal Behav	9(1)	e27848	2014		
37988	24397549	Onda Y., Miyagi A., Takahara K., Uchimiya H., Kawai-Yamada M.	Effects of NAD kinase 2 overexpression on primary metabolite profiles in rice leaves under elevated carbon dioxide.	Plant Biol (Stuttg)	16(4)	819-24	2014	GLT2,GLN1;1	OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1
37989	21258067	Arai-Kichise Y., Shiwa Y., Nagasaki H., Ebana K., Yoshikawa H., Yano M., Wakasa K.	Discovery of genome-wide DNA polymorphisms in a landrace cultivar of japonica rice by whole-genome sequencing	Plant and Cell Physiology	52	274-282	2011		
37990	21186176	Sakurai T., Kondou Y., Akiyama K., Kurotani A., Higuchi M., Ichikawa T., Kuroda H., Kusano M., Mori M., Saitou T., Sakakibara H., Sugano S., Suzuki M., Takahashi H., Takahashi S., Takatsuji H., Yokotani N., Yoshizumi T., Saito K., Shinozaki K., Oda K., Hirochika H., Matsui M.	RiceFOX: A database of arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function	Plant and Cell Physiology	52	265-273	2011		
37991	0	Mathure S., Shaikh A., Renuka N., Wakte K., Jawali N., Thengane R., Nadaf A.	Characterisation of aromatic rice (Oryza sativa L.) germplasm and correlation between their agronomic and quality traits	Euphytica	179	237-246	2011		
37993	0	Li W., Xu L., Bai X., Xing Y.	Quantitative trait loci for seed dormancy in rice	Euphytica	178	427-435	2011		
37994	20878143	Wang L., Wang A., Huang X., Zhao Q., Dong G., Qian Q., Sang T., Han B.	Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines	Theoretical and Applied Genetics	122	327-340	2011		
37995	0	Kanbar A., Shashidhar H.E.	Participatory selection assisted by DNA markers for enhanced drought resistance and productivity in rice (Oryza sativa L.)	Euphytica	178	137-150	2011		
37996	0	Nakano T., Ito Y.	Molecular mechanisms controlling plant organ abscission	Plant Biotechnology	30	209-216	2013	SHAT1,SH1,SH4,qSH1	SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,qSH1, qsh1, qSH-1
37997	0	Qin Y., Suk-Man Kim, Zhao X., Jia B., Hyunn-Suk Lee, Kyung-Min Kim, Moo-Young Eun, Il-Doo Jin, Jae-Keun Sohn	Identification for quantitative trait loci controlling grain shattering in rice	Genes Genomics	32	173-180	2010		
37998	24280096	Chen X.a, Fu S.a, Zhang P.a, Gu Z.a, Liu J.a, Qian Q.b, Ma B.a	Proteomic analysis of a disease-resistance-enhanced lesion mimic mutant spotted leaf 5 in rice	Rice (N Y)	6	1	2013	SPL5,CHT8,APX7,_,_,_,RCS1,GSTF14,FDH,_,_,_,_	spl5(bl6,spl5-1), bl6, spl5, SF3b3,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,TXNL4B, Dim2, DLP,AST,ALT-2,rcs1,OsGSTF14, GST14,OsFDH, FDH 1,Rubisco-L,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,GAPDH, OsGAPDH, OsGapC2
37999	11124253	C J Jiang, K Shoji, R Matsuki, A Baba, N Inagaki, H Ban, T Iwasaki, N Imamoto, Y Yoneda, X W Deng, N Yamamoto	Molecular cloning of a novel importin alpha homologue from rice, by which constitutive photomorphogenic 1 (COP1) nuclear localization signal (NLS)-protein is preferentially nuclear imported.	J. Biol. Chem.	276(12)	9322-9	2001	IMPA2,IMPA1B,IMPA1A	,,rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a
38000	12618411	C?dric Feschotte, Swamy L., Susan R Wessler	Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs).	Genetics	163(2)	747-58	2003	STOW-OS25,STOW-OS50,STOW-OS32,STOW-OS45,STOW-OS10,STOW-OS38,STOW-OS8,STOW-OS23,STOW-OS18,STOW-OS24,STOW-OS30,STOW-OS15,STOW-OS26,STOW-OS46,STOW-OS21,STOW-OS13,STOW-OS28,STOW-OS34,STOW-OS9,STOW-OS52,STOW-OS51,STOW-OS37,STOW-OS16,STOW-OS35,STOW-OS49,STOW-OS20,STOW-OS42,STOW-OS12,STOW-OS29,STOW-OS14,STOW-OS11,MAR1,MAR4,MAR7,MAR27I,MAR29I,MAR8A,MAR32I,MAR19,MAR11,MAR14A,MAR14B,MAR14C,MAR16,MAR5A,MAR2,MAR24,MAR24BI,MAR21,MAR28I,MAR17A,MAR13,MAR9A,MAR9B,MAR10A,MAR18I,STOW-OS3,STOW-OS5,STOW-OS6,STOW-OS1	Stow-Os25,Stow-Os50,Stow-Os32,Stow-Os45,Stow-Os10,Stow-Os38,Stow-Os8,Stow-Os23,Stow-Os18,Stow-Os24,Stow-Os30,Stow-Os15,Stow-Os26,Stow-Os46,Stow-Os21,Stow-Os13,Stow-Os28,Stow-Os34,Stow-Os9,Stow-Os52,Stow-Os51,Stow-Os37,Stow-Os16,Stow-Os35,Stow-Os49,Stow-Os20,Stow-Os42,Stow-Os12,Stow-Os29,Stow-Os14,Stow-Os11,Osmar1,Osmar4,Osmar7,Osmar27i,Osmar29i,Osmar8a,Osmar32i,Osmar19,Osmar11,Osmar14A,Osmar14B,Osmar14C,Osmar16,Osmar5A,Osmar2,Osmar24,Osmar24Bi,Osmar21,Osmar28i,Osmar17A,Osmar13,Osmar9A,Osmar9B,Osmar10A,Osmar18i,Stow-Os3,Stow-Os5,Stow-Os6,Stow-Os1
38001	9933584	S Kose, N Imamoto, T Tachibana, M Yoshida, Y Yoneda	beta-subunit of nuclear pore-targeting complex (importin-beta) can be exported from the nucleus in a Ran-independent manner.	J. Biol. Chem.	274(7)	3946-52	1999		
38002	12087189	Nagano H., Kunii M., Azuma T., KISHIMA Y., SANO Y.	Characterization of the repetitive sequences in a 200-kb region around the rice waxy locus: diversity of transposable elements and presence of veiled repetitive sequences.	Genes Genet. Syst.	77(2)	69-79	2002	MASHU,STOW-OS4,STOW-OS6,TABITOV,TABITOI,TABITOII,TABITOIII,TABITOIV,TABITOVI,KISERUI,KISERUII,KISERUIV,AKAN,SAROMA,TOYA,MOIWA,RISHIRI,TAISETSU,TENGU,YOUTEI,TEINE,BASHO,ONAGAI,ONAGAII,MERMITE,SHARI,SHIKOTSU,KISERUIII	Mashu,Stow-Os4,Stow-Os6,TabitoV,TabitoI,TabitoII,TabitoIII,TabitoIV,TabitoVI,KiseruI,KiseruII,KiseruIV,Akan,Saroma,Toya,Moiwa,Rishiri,Taisetsu,Tengu,Youtei,Teine,Basho,OnagaI,OnagaII,Mermite,Shari,Shikotsu,KiseruIII
38003	8061524	T E Bureau, S R Wessler	Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants.	Plant Cell	6(6)	907-16	1994	STOW-OS2,STOW-OS3,STOW-OS4,STOW-OS5,STOW-OS6,STOW-OS7,STOW-OS1	Stow-Os2,Stow-Os3,Stow-Os4,Stow-Os5,Stow-Os6,Stow-Os7,Stow-Os1
38004	20511295	Toriba T., Suzaki T., Yamaguchi T., Ohmori Y., Tsukaya H., Hiro-Yuki Hirano	Distinct regulation of adaxial-abaxial polarity in anther patterning in rice.	Plant Cell	22(5)	1452-62	2010	ARF3,_,SHL2,HB4	OsARF3, ETT3, Os ETT3, OsETT3,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,shl2, SHL2, sh2, OsRDR6, RDR6,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3
38005	18627494	Clarice de Azevedo Souza, Barbazuk B., Steven G Ralph, Bohlmann J., Hamberger B., Carl J Douglas	Genome-wide analysis of a land plant-specific acyl:coenzyme A synthetase (ACS) gene family in Arabidopsis, poplar, rice and Physcomitrella.	New Phytol.	179(4)	987-1003	2008	4CL1,4CL2,_,_,_,_,_,_,_,_,4CL4,_,4CL5,4CL3	Os4CL1, 4-CL, 4-CL. 1,Os4CL2,OsACS1,OsACS3,OsACS8,OsACS2,OsACS4, ACS4,OsACS5, ACS5,OsACS6, ACS6,OsACS7, ACS7,Os4CL4,OsACS9, ACS9, 4CL4, OsACOS12, ACOS12 ,Os4CL5, 4CL3, Os4CL3,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL
38006	21335373	Patricia Fern?ndez-Calvo, Chini A., Gemma Fern?ndez-Barbero, Jos?-Manuel Chico, Selena Gimenez-Ibanez, Geerinck J., Eeckhout D., Schweizer F., Godoy M., Jos? Manuel Franco-Zorrilla, Pauwels L., Witters E., Mar?a Isabel Puga, Javier Paz-Ares, Goossens A., Reymond P., Geert De Jaeger, Solano R.	The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses.	Plant Cell	23(2)	701-15	2011		
38007	10635550	N Mitsukawa, R Konishi, M Uchiki, T Masumura, K Tanaka	Molecular cloning and characterization of a cysteine-rich 16.6-kDa prolamin in rice seeds.	Biosci. Biotechnol. Biochem.	63(11)	1851-8	1999	_	Prol-17, OsEnS-88, pro16.2, PROLM24
38008	0	Park S., Man-Ho Cho, Seong Hee Bhoo, Jong-Seong Jeon, Young-Kook Kwon, Tae-Ryong Hahn	Altered sucrose synthesis in rice plants with reduced activity of fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase	Journal of Plant Biology	50(1)	38-43	2007	_,_	OsF2KP2,OsF2KP1
38009	10557228	Hirose N., Yamaya T.	Okadaic Acid Mimics Nitrogen-Stimulated Transcription of the NADH-glutamate synthase Gene in Rice Cell Cultures.	Plant Physiol.	121(3)	805-812	1999	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1
38010	14966247	Jia L., Michael T Clegg, Jiang T.	Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes.	Plant Physiol.	134(2)	575-85	2004	C,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,ALYL1,_,_,_,_,_,_,_,_,CSA,_,_,_,_,_,MYB20,_,JAMYB,GAMYB,_,_,_	C, Cp, OsC1, Os-C1, OsMyb6, Myb6,R2R3-MYB,OsMYB8,OsMyb5, OSMYB5, MYB5,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB,OsMyb12,OsMyb10,R2R3-MYB,R2R3-MYB,OsMPS,myb7,OsMYB42/85, MYB42/85,R2R3-MYB,OsALYL1,R2R3-MYB,R2R3-MYB,R2R3-MYB,R2R3-MYB, OsMYB4P,R2R3-MYB, OsEnS-23,OsMYB55, OsMYB-2,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110,OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,csa,R2R3-MYB,OsMyb3, OSMYB3, MYB3,OsMyb11, Myb11, OsMYB60, MYB60,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L,R2R3-MYB, OsGL1A, GL1A,OsMYB20,R2R3-MYB, OsMYB102, MYB102,OsJAmyb, JAmyb, OsJAMyb ,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C,R2R3-MYB,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8
38011	24604734	Fang Y., Xie K., Xiong L.	Conserved miR164-targeted NAC genes negatively regulate drought resistance in rice.	J. Exp. Bot.	65(8)	2119-35	2014	Y37,MIR164A,PSK3,_,NAM,_,MIR164E,MIR164C,MIR164F,MIR164D,NAC104,MIR164B,NAC60,NAC1,NAC2	NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1,miR164a, osa-miR164a,OsPSK3, GREP2, OMT9,OMT7,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2,OMT8,miR164e, osa-MIR164e,miR164c, osa-miR164c,miR164f, osa-miR164f,miR164d, osa-miR164d,OMTN6, ONAC104,miR164b, osa-miR164b,ONAC060, ONAC60, OMTN3, OsNAC60,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2
38012	24489802	Liu G., Li X., Jin S., Liu X., Zhu L., Nie Y., Zhang X.	Overexpression of rice NAC gene SNAC1 improves drought and salt tolerance by enhancing root development and reducing transpiration rate in transgenic cotton.	PLoS ONE	9(1)	e86895	2014	_	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1
38013	24058359	Nuruzzaman M., Sharoni A.M., Kikuchi S.	Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants.	Front Microbiol	4	248	2013	ONAC131,ONAC122,RIM1,NAC63,NAC4,NAC3,NAC5,NAC122,NAC6,_,NAC2	NAC131,NAC122,ONAC054, ONAC54, NAC54,ONAC063, ONAC63,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC10, NAC10, ONAC122, NAC122,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2
38014	19697058	Raul A Sperotto, Felipe K Ricachenevsky, Guilherme L Duarte, Boff T., Karina L Lopes, Edilena R Sperb, Michael A Grusak, Janette Palma Fett	Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor.	Planta	230(5)	985-1002	2009		
38015	18813954	Fang Y., You J., Xie K., Xie W., Xiong L.	Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.	Mol. Genet. Genomics	280(6)	547-63	2008	NAC88,NAC3,NAC72,NAC32,_,_,_,NAC28,NAC12,NAC13,NAC75,NAC15,NAC18,NAC19,NAM,NAC21,NAC7,NAC26,NAC41,NAC47,NAC49,RIM1,NAC82,NAC59,NAC65,NAC66,NAC16,NAC30,NAC20,NAC35,NAC46,NAC52,NAC64,NAC69,NAC71,NAC76,NAC77,NAC78,NAC80,NAC83,NAC84,NAC86,NAC87,NAC89,NAC38,NAC44,NAC51,NAC50,NAC73,NAC61,NAC57,_,NAC94,NAC97,NAC98,NAC99,NAC100,NAC101,NAC102,NAC105,NAC108,NAC109,NAC110,NAC112,NAC111,NAC113,NAC114,NAC115,NAC116,NAC117,NAC118,NAC119,NAC124,NAC125,NAC126,NAC128,NAC130,NAC133,NAC134,NAC137,NAC138,NAC140,NAC33,NAC43,NAC120,NAC135,NAC90,NAC8,NAC42,NAC70,NAC37,NAC34,Y37,NAC25,NAC14,_,NAC40,NAC60,NAC53,NAC91,NAC129,NAC79,NAC24,NAC55,NAC136,CUC3,CUC1,_,NAC36,NAC56,NAC31,NAC45,ONAC300,BET1,NAC85,NAC17,NAC123,NAC104,NAC131,NAC127,NAC95,NAC22,NAC62,NAC96,NAC29,NAC106,NAC103,NAC139,NAC121,TMS5,NAC122,NAC58,NAC2,NAC10,NAC5,NAC63,NAC4,NAC1,NAC6,_	ONAC088, ONAC88,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,ONAC072, ONAC72,ONAC032, ONAC32, ONAC056, ONAC56,ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52,ONAC006, ONAC6,ONAC008, ONAC8,ONAC028, ONAC28,ONAC012, ONAC12,ONAC013, ONAC13, ONAC064, ONA064,ONAC075, ONAC75,ONAC015, ONAC15, ONAC069, ONAC69,ONAC018, ONAC18, OsSWN4,ONAC019, ONAC19,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2,ONAC021, ONAC21,OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93,ONAC026, ONAC26, OsEnS-8,ONAC041, ONAC41, ONAC050, ONAC50,ONAC047, ONAC47,ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57,ONAC054, ONAC54, NAC54,OsSWN6, ONAC082, ONAC82,ONAC059, ONAC59,ONAC065, ONAC65,ONAC066, ONAC66,ONAC016, ONAC16,ONAC030, ONAC30,ONAC020, ONAC20,ONAC035, ONAC35,ONAC046, ONAC46,ONAC052, ONAC52,ONAC064, ONAC64,ONAC069, ONAC69,ONAC071, ONAC71,ONAC076, ONAC76,ONAC077, ONAC77,ONAC078, ONAC78,ONAC080, ONAC80,ONAC083, ONAC83,ONAC084, ONAC84,ONAC086, ONAC86,ONAC087, ONAC87,ONAC089, ONAC89,ONAC038, ONAC38,ONAC044, ONAC44,ONAC051, ONAC51,ONAC050, ONAC50,ONAC073, ONAC73,ONAC061, ONAC61,ONAC057, ONAC57,ONAC001, ONAC1,ONAC094, ONAC94,ONAC097, ONAC97,ONAC098, ONAC98,ONAC099, ONAC99,ONAC100,ONAC101,ONAC102,ONAC105,ONAC108,ONAC109,ONAC110,ONAC112,ONAC111,ONAC113,ONAC114,ONAC115,ONAC116,ONAC117,ONAC118,ONAC119,ONAC124,ONAC125,ONAC126,ONAC128,ONAC130,ONAC133,ONAC134,ONAC137,ONAC138,ONAC140,ONAC033, ONAC33,ONAC043, ONAC43,ONAC120,ONAC135,OsSWN7, ONAC090, ONAC90,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC070, ONAC70, OsNTL6, NTL6,ONAC037, ONAC37, OsNTL2, NTL2,ONAC034, ONAC34,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1,ONAC025, ONAC25, OsEnS-144,ONAC014, ONAC14, OsNAC14, NAC14,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5,ONAC060, ONAC60, OMTN3, OsNAC60,ONAC053, ONAC53,ONAC091, ONAC91,ONAC129,ONAC079, ONAC79,NAC94, ONAC024, ONAC24,ONAC055, ONAC55,ONAC136, OsSTA279,OsCUC3, ONAC107, NAC107,ONAC039, ONAC39, NAC39, OsCUC1,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,ONAC056, ONAC56, OsSWN5,ONAC031, ONAC31, OsSWN3,ONAC045, ONAC45,ONAC077, NAC77, NAC300, ONAC132, NAC132,BET1, ONAC081, ONAC81, NAC81,ONAC085, ONAC85,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,ONAC123, N77,OMTN6, ONAC104,ONAC131,ONAC127, OsEnS-145,ONAC095, ONAC95,ONAC022, ONAC22,ONAC062, ONAC62, OsSND2, SND2,NAC94, ONAC096, ONAC96, NAC4, OsNAC4,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2 ,ONAC106,ONAC103, OsNAC18 , NAC18,ONAC139, OsNAM,ONAC121,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,OsNAC10, NAC10, ONAC122, NAC122,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,ONAC010, ONAC10, OsSTA199,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,ONAC063, ONAC63,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1
38016	0	Shen H., Yin Y., Chen F., Xu Y., Richard A. Dixon	A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production	Bioenerg. Res.	2	217?232	2009	NAC143,NAC117,NAC148,NAC135,BET1,NAC125,NAC41,NAC46,RIM1,NAC87,NAC80,NAC38,NAC90,NAC28,NAC44,NAC72,Y37,NAC82,NAC32,_,_,_,NAC61,NAC50,NAC12,NAC13,NAC15,NAC75,NAC18,NAM,NAC56,NAC85,NAC45,NAC19,NAC21,NAC7,NAC47,NAC49,NAC59,NAC65,NAC66,NAC16,NAC30,NAC20,NAC35,NAC52,NAC64,NAC69,NAC76,NAC77,NAC78,NAC83,NAC84,NAC86,NAC89,NAC94,NAC43,NAC51,NAC73,NAC57,NAC63,NAC104,_,NAC97,NAC98,NAC99,NAC100,NAC102,NAC105,NAC108,NAC110,NAC112,NAC111,NAC113,NAC114,NAC115,NAC116,NAC118,NAC119,NAC124,NAC126,NAC128,NAC130,NAC134,NAC137,NAC138,NAC140,NAC141,NAC142,NAC144,NAC145,NAC147,NAC149,NAC33,NAC120,_,NAC34,NAC8,NAC42,NAC70,NAC37,NAC25,NAC14,NAC40,NAC53,NAC60,NAC146,NAC91,NAC129,NAC1,NAC24,NAC3,TMS5,NAC55,NAC136,CUC3,ONAC300,CUC1,_,NAC36,NAC31,NAC17,NAC123,NAC121,NAC127,NAC95,NAC10,NAC96,NAC22,NAC131,NAC62,NAC122,NAC29,NAC58,NAC106,NAC103,NAC139,_,NAC6,NAC88,NAC71,NAC109,NAC101,NAC26,NAC5,NAC4,NAC2,NAC133,NAC79	ONAC143,ONAC117,ONAC148,ONAC135,BET1, ONAC081, ONAC81, NAC81,ONAC125,ONAC041, ONAC41, ONAC050, ONAC50,ONAC046, ONAC46,ONAC054, ONAC54, NAC54,ONAC087, ONAC87,ONAC080, ONAC80,ONAC038, ONAC38,OsSWN7, ONAC090, ONAC90,ONAC028, ONAC28,ONAC044, ONAC44,ONAC072, ONAC72,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1,OsSWN6, ONAC082, ONAC82,ONAC032, ONAC32, ONAC056, ONAC56,ONAC005, ONAC5, ONAC035, ONAC35, ONAC046, ONAC46, ONAC052, ONAC52,ONAC006, ONAC6,ONAC008, ONAC8,ONAC061, ONAC61,ONAC050, ONAC50,ONAC012, ONAC12,ONAC013, ONAC13, ONAC064, ONA064,ONAC015, ONAC15, ONAC069, ONAC69,ONAC075, ONAC75,ONAC018, ONAC18, OsSWN4,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2,ONAC056, ONAC56, OsSWN5,ONAC085, ONAC85,ONAC045, ONAC45,ONAC019, ONAC19,ONAC021, ONAC21,OsNAC7, ONAC076, NAC76, OsNAC7/ONAC093, ONAC093, ONAC93, NAC93,ONAC047, ONAC47,ONAC049, ONAC49, ONAC053, ONAC53, NAC53, ONAC057, ONAC57, NAC57,ONAC059, ONAC59,ONAC065, ONAC65,ONAC066, ONAC66,ONAC016, ONAC16,ONAC030, ONAC30,ONAC020, ONAC20,ONAC035, ONAC35,ONAC052, ONAC52,ONAC064, ONAC64,ONAC069, ONAC69,ONAC076, ONAC76,ONAC077, ONAC77,ONAC078, ONAC78,ONAC083, ONAC83,ONAC084, ONAC84,ONAC086, ONAC86,ONAC089, ONAC89,ONAC094, ONAC94,ONAC043, ONAC43,ONAC051, ONAC51,ONAC073, ONAC73,ONAC057, ONAC57,ONAC063, ONAC63,OMTN6, ONAC104,ONAC001, ONAC1,ONAC097, ONAC97,ONAC098, ONAC98,ONAC099, ONAC99,ONAC100,ONAC102,ONAC105,ONAC108,ONAC110,ONAC112,ONAC111,ONAC113,ONAC114,ONAC115,ONAC116,ONAC118,ONAC119,ONAC124,ONAC126,ONAC128,ONAC130,ONAC134,ONAC137,ONAC138,ONAC140,ONAC141,ONAC142,ONAC144,ONAC145,ONAC147,ONAC149,ONAC033, ONAC33,ONAC120,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1,ONAC034, ONAC34,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC070, ONAC70, OsNTL6, NTL6,ONAC037, ONAC37, OsNTL2, NTL2,ONAC025, ONAC25, OsEnS-144,ONAC014, ONAC14, OsNAC14, NAC14,ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5,ONAC053, ONAC53,ONAC060, ONAC60, OMTN3, OsNAC60,ONAC146,ONAC091, ONAC91,ONAC129,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027,NAC94, ONAC024, ONAC24,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,ONAC055, ONAC55,ONAC136, OsSTA279,OsCUC3, ONAC107, NAC107,ONAC077, NAC77, NAC300, ONAC132, NAC132,ONAC039, ONAC39, NAC39, OsCUC1,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,ONAC031, ONAC31, OsSWN3,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,ONAC123, N77,ONAC121,ONAC127, OsEnS-145,ONAC095, ONAC95,ONAC010, ONAC10, OsSTA199,NAC94, ONAC096, ONAC96, NAC4, OsNAC4,ONAC022, ONAC22,ONAC131,ONAC062, ONAC62, OsSND2, SND2,OsNAC10, NAC10, ONAC122, NAC122,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2 ,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,ONAC106,ONAC103, OsNAC18 , NAC18,ONAC139, OsNAM,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,ONAC088, ONAC88,ONAC071, ONAC71,ONAC109,ONAC101,ONAC026, ONAC26, OsEnS-8,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,ONAC133,ONAC079, ONAC79
38017	24764506	Todaka D., Nakashima K., Shinozaki K., Kazuko Yamaguchi-Shinozaki	Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice.	Rice (N Y)	5	6	2012	ZFP252,ERF28,ZFP179,ZFP245,TRAB1,DREB1F,ERF3,BZIP23,BZIP72,DREB2A,ERF91,ABI5,_,DREB1A,DST,BZIP46,DREB1B,NAC6,NAC5,ERF42,NAC122,_,TIFY11A,_,WRKY45	RZF71,OsERF#028, OsERF028, OsERF28, OsERF#029, OsERF029, OsERF29, ERF29, DERF4, OsDERF4, AP2/EREBP#161, AP2/EREBP161, OsDREB1J, OsDREB1I, OsDREB1G,OsZFP179,OsZFP245,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDST,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsNAC10, NAC10, ONAC122, NAC122,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8,OsWRKY45
38018	20807373	Myoung-Ryoul Park, Kil-Young Yun, Mohanty B., Herath V., Xu F., Wijaya E., Vladimir B Bajic, Song-Joong Yun, Benildo G De Los Reyes	Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.	Plant Cell Environ.	33(12)	2209-30	2010	_	OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8
38019	24093634	Nakayama A., Fukushima S., Goto S., Matsushita A., Shimono M., Sugano S., Jiang C.J., Akagi A., Yamazaki M., Inoue H., Takatsuji H.	Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.	BMC Plant Biol.	13	150	2013	NAC4,SPL7,WRKY62,WRKY45,NH1	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY45,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
38020	23696671	Inoue H., Hayashi N., Matsushita A., Xinqiong L., Nakayama A., Sugano S., Jiang C.J., Takatsuji H.	Blast resistance of CC-NB-LRR protein Pb1 is mediated by WRKY45 through protein-protein interaction.	Proc. Natl. Acad. Sci. U.S.A.	110(23)	9577-82	2013	PB1,WRKY45	Pb1, Pbst, RMG58.,OsWRKY45
38021	16117849	Xiao Qiang Liu, Xian Quan Bai, Qian Q., Xiu Jie Wang, Ming Sheng Chen, Cheng Cai Chu	OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1.	Cell Res.	15(8)	593-603	2005	POX22.3,WRKY12,PAL1,PR1B,NH1	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsWRKY12,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
38022	24619999	Ni D.H., Li J., Duan Y.B., Yang Y.C., Wei P.C., Xu R.F., Li C.R., Liang D.D., Li H., Song F.S., Ni J.L., Li L., Yang J.B.	Identification and utilization of cleistogamy gene cl7(t) in rice (Oryza sativa L.).	J. Exp. Bot.	65(8)	2107-17	2014	EP2	ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, CL7(t)
38023	24503697	Park C., Jeong N.Y., Kim G.Y., Han M.H., Chung I.M., Kim W.J., Yoo Y.H., Choi Y.H.	Momilactone B induces apoptosis and G1 arrest of the cell cycle in human monocytic leukemia U937 cells through downregulation of pRB phosphorylation and induction of the cyclin-dependent kinase inhibitor p21Waf1/Cip1.	Oncol. Rep.	31(4)	1653-60	2014		
38024	24661882	Wang D., Guo C., Huang J., Yang S., Tian D., Zhang X.	Allele-mining of rice blast resistance genes at AC134922 locus.	Biochem. Biophys. Res. Commun.	446(4)	1085-90	2014		
38025	24643423	Gui H., Li X., Liu Y., Han K., Li X.	The relationship between PMI (manA) gene expression and optimal selection pressure in Indica rice transformation.	Plant Cell Rep.	33(7)	1081-90	2014		
38026	24406793	Saika H., Horita J., Taguchi-Shiobara F., Nonaka S., Ayako N.Y., Iwakami S., Hori K., Matsumoto T., Tanaka T., Itoh T., Yano M., Kaku K., Shimizu T., Toki S.	A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and Arabidopsis.	Plant Physiol.			2014	CYP72A31,CYP72A33,BEL,CYP72A32	,,bel, bel-a(8077S), bel-b(=bsl, Norin8m), CYP81A6,OsCYP72A32
38027	24530223	Basu S., Roychoudhury A., Sengupta D.N.	Identification of trans-acting factors regulating SamDC expression in Oryza sativa.	Biochem. Biophys. Res. Commun.	445(2)	398-403	2014		
38028	24460889	Choudhary B., Gheysen G., Buysse J., van der Meer P., Burssens S.	Regulatory options for genetically modified crops in India.	Plant Biotechnol. J.	12(2)	135-46	2014		
38029	24642883	Chen J., Zhang Y., Liu J., Xia M., Wang W., Shen F.	Genome-wide analysis of the RNA helicase gene family in Gossypium raimondii.	Int J Mol Sci	15(3)	4635-56	2014		
38030	24450460	Li J.B., Lu L., Jia Y., Li C.	Effectiveness and durability of the rice Pi-ta gene in Yunnan province of China.	Phytopathology	104(7)	762-8	2014		
38031	24498868	Naranjo L., Tal?n M., Domingo C.	Diversity of floral regulatory genes of japonica rice cultivated at northern latitudes.	BMC Genomics	15	101	2014		
38032	24416331	Gardiner D.M., Upadhyaya N.M., Stiller J., Ellis J.G., Dodds P.N., Kazan K., Manners J.M.	Genomic analysis of Xanthomonas translucens pathogenic on wheat and barley reveals cross-kingdom gene transfer events and diverse protein delivery systems.	PLoS ONE	9(1)	e84995	2014		
38033	24498271	Piao R., Chu S.H., Jiang W., Yu Y., Jin Y., Woo M.O., Lee J., Kim S., Koh H.J.	Isolation and Characterization of a Dominant Dwarf Gene, D-h, in Rice.	PLoS ONE	9(2)	e86210	2014	DH	D-h(t)*, Dwf43, D-h
38034	24612254	Tripathi J.N., Lorenzen J., Bahar O., Ronald P., Tripathi L.	Transgenic expression of the rice Xa21 pattern-recognition receptor in banana (Musa sp.) confers resistance to Xanthomonas campestris pv. musacearum.	Plant Biotechnol. J.			2014		
38035	24344976	Ali M.A., Dillstrom V.T., Lai J.Y., Violi A.	Ab initio investigation of the thermal decomposition of n-butylcyclohexane.	J Phys Chem A	118(6)	1067-76	2014		
38036	24481057	Arun T.A., Madhavan A.A., Chacko D.K., Anjusree G.S., Deepak T.G., Thomas S., Nair S.V., Nair A.S.	A facile approach for high surface area electrospun TiO2 nanostructures for photovoltaic and photocatalytic applications.	Dalton Trans	43(12)	4830-7	2014		
38037	24642612	Lin C., Li R., Cheng H., Wang J., Shao X.	Tungsten Distribution in Soil and Rice in the Vicinity of the World's Largest and Longest-Operating Tungsten Mine in China.	PLoS ONE	9(3)	e91981	2014		
38038	24433490	Byeon Y., Park S., Lee H.Y., Kim Y.S., Back K.	Elevated production of melatonin in transgenic rice seeds expressing rice tryptophan decarboxylase.	J. Pineal Res.	56(3)	275-282	2014		
38039	24633351	Singh P.K., Thakur S., Rathour R., Variar M., Prashanthi S.K., Singh A.K., Singh U.D., Sharma V., Singh N.K., Sharma T.R.	Transposon-based high sequence diversity in Avr-Pita alleles increases the potential for pathogenicity of Magnaporthe oryzae populations.	Funct. Integr. Genomics	14(2)	419-29	2014		
38040	24414168	Sahoo R.K., Ansari M.W., Pradhan M., Dangar T.K., Mohanty S., Tuteja N.	Phenotypic and molecular characterization of native Azospirillum strains from rice fields to improve crop productivity.	Protoplasma	251(4)	943-53	2014		
38041	24443494	Sugano S.S., Shirakawa M., Takagi J., Matsuda Y., Shimada T., Hara-Nishimura I., Kohchi T.	CRISPR/Cas9-Mediated Targeted Mutagenesis in the Liverwort Marchantia polymorpha L.	Plant Cell Physiol.	55(3)	475-81	2014		
38042	24451326	Schmidt R., Caldana C., Mueller-Roeber B., Schippers J.H.	The contribution of SERF1 to root-to-shoot signaling during salinity stress in rice.	Plant Signal Behav	9(1)	e27540	2014	ERF131	OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1
38043	24494805	Ezenwaka C.E., Okoye O., Esonwune C., Dioka C., Onuoha P., Osuji C., Oguejiofor O.C., Meludu S.C.	Is diabetes patients' knowledge of laboratory tests for monitoring blood glucose levels associated with better glycaemic control?	Arch. Physiol. Biochem.	120(2)	86-90	2014		
38044	24554344	Cha S., Srinivasan S., Seo T., Kim M.K.	Deinococcus soli sp. nov., a Gamma-Radiation-Resistant Bacterium Isolated from Rice Field Soil.	Curr. Microbiol.	68(6)	777-83	2014		
38045	24663444	Sharma R., Sahoo A., Devendran R., Jain M.	Over-expression of a rice tau class glutathione s-transferase gene improves tolerance to salinity and oxidative stresses in Arabidopsis.	PLoS ONE	9(3)	e92900	2014		
38046	24374919	Minato K.	Hexanoyl-lysine as a deterioration marker for rice during storage.	Subcell. Biochem.	77	73-82	2014		
38047	24600019	Lemos Batista B., Nigar M., Mestrot A., Alves Rocha B., Barbosa J?nior F., Price A.H., Raab A., Feldmann J.	Identification and quantification of phytochelatins in roots of rice to long-term exposure: evidence of individual role on arsenic accumulation and translocation.	J. Exp. Bot.	65(6)	1467-79	2014		
38048	24401405	Chen G., Chen T.	SPE speciation of inorganic arsenic in rice followed by hydride-generation atomic fluorescence spectrometric quantification.	Talanta	119	202-6	2014		
38049	24390243	Qian Y., Xi Y., Cheng B., Zhu S., Kan X.	Identification and characterization of the SET domain gene family in maize.	Mol. Biol. Rep.	41(3)	1341-54	2014		
38050	24549114	Guo X., Wen F., Zheng N., Luo Q., Wang H., Wang H., Li S., Wang J.	Development of an ultrasensitive aptasensor for the detection of aflatoxin B1.	Biosens Bioelectron	56	340-4	2014		
38051	24504698	Piedrah?ta-Aguirre CA., Bastos R.G., Carvalho A.L., Monte Alegre R.	The influence of process parameters in production of lipopeptide iturin A using aerated packed bed bioreactors in solid-state fermentation.	Bioprocess Biosyst Eng			2014		
38052	24434621	Cheng A.X., Han X.J., Wu Y.F., Lou H.X.	The function and catalysis of 2-oxoglutarate-dependent oxygenases involved in plant flavonoid biosynthesis.	Int J Mol Sci	15(1)	1080-95	2014		
38053	24323625	Wu C.S., Yang W.K., Lee T.H., Gomez-Mestre I., Kam Y.C.	Salinity acclimation enhances salinity tolerance in tadpoles living in brackish water through increased Na? , K? -ATPase expression.	J Exp Zool A Ecol Genet Physiol	321(1)	57-64	2014		
38054	24691103	Kumar K., Sinha A.K.	Genome-wide transcriptome modulation in rice transgenic lines expressing engineered Mitogen activated protein kinase kinase 6.	Plant Signal Behav	9(3)	e28502	2014		
38055	24587364	Li J., Lu J., Li X., Ren T., Cong R., Zhou L.	Dynamics of potassium release and adsorption on rice straw residue.	PLoS ONE	9(2)	e90440	2014		
38056	24632997	Wang C., Liu X., Peng S., Xu Q., Yuan X., Feng Y., Yu H., Wang Y., Wei X.	Development of Novel Microsatellite Markers for the BBCC Oryza Genome (Poaceae) Using High-Throughput Sequencing Technology.	PLoS ONE	9(3)	e91826	2014		
38057	24557528	Jiao W., Ouyang W., Hao F., Liu B., Wang F.	Geochemical variability of heavy metals in soil after land use conversions in Northeast China and its environmental applications.	Environ Sci Process Impacts	16(4)	924-31	2014		
38058	24571270	Byeon Y., Back K.	An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield.	J. Pineal Res.	56(4)	408-14	2014		
38059	24274014	Cao J., Xu J., Zhao T., Cao D., Huang X., Zhang P., Luan F.	Flanking sequence determination and specific PCR identification of transgenic wheat B102-1-2.	Prep. Biochem. Biotechnol.	44(3)	257-65	2014		
38060	24561073	Wang Y.C., Ho R.C., Feng C.C., Namsanor J., Sithithaworn P.	An ecological study of Bithynia snails, the first intermediate host of Opisthorchis viverrini in northeast Thailand.	Acta Trop.	141(ptB)	244-52	2014		
38061	24626216	Gupta R., Deswal R.	Refolding of beta-Stranded Class I Chitinases of Hippophae rhamnoides Enhances the Antifreeze Activity during Cold Acclimation.	PLoS ONE	9(3)	e91723	2014		
38062	24446340	Meng M., Gao X., Han L.J., Li X.Y., Wu D., Li H.Z., Chen Q.J.	Correlation analysis between starch properties and single nucleotide polymorphisms of Waxy genes in common rye (Secale cereale L.).	Genet. Mol. Res.	13(AOP)	2574-89	2014		
38063	24509730	Yun L., Larson S.R., Mott I.W., Jensen K.B., Staub J.E.	Genetic control of rhizomes and genomic localization of a major-effect growth habit QTL in perennial wildrye.	Mol. Genet. Genomics	289(3)	383-97	2014		
38064	24678507	Zhang Y., Zheng R., Zhao J., Ma F., Zhang Y., Meng Q.	Characterization of H3PO4-Treated Rice Husk Adsorbent and Adsorption of Copper(II) from Aqueous Solution.	Biomed Res Int	2014	496878	2014		
38065	24597823	Nunes A.L., Delatorre C.A., Merotto A.	Gene expression related to Seed shattering and the cell wall in cultivated and weedy rice.	Plant Biol (Stuttg)			2014		
38066	24136530	Neilson K.A., George I.S., Emery S.J., Muralidharan S., Mirzaei M., Haynes P.A.	Analysis of rice proteins using SDS-PAGE shotgun proteomics.	Methods Mol. Biol.	1072	289-302	2014		
38067	24482190	Srivastava R.K., Pandey P., Rajpoot R., Rani A., Dubey R.S.	Cadmium and lead interactive effects on oxidative stress and antioxidative responses in rice seedlings.	Protoplasma			2014		
38068	24520156	Lin M.Y., Chai K.H., Ko S.S., Kuang L.Y., Lur H.S., Charng Y.Y.	A Positive Feedback Loop between HEAT SHOCK PROTEIN101 and HEAT STRESS-ASSOCIATED 32-KD PROTEIN Modulates Long-Term Acquired Thermotolerance Illustrating Diverse Heat Stress Responses in Rice Varieties.	Plant Physiol.	164(4)	2045-53	2014		
38069	24646013	Lu W., Liu F., Emre R., Liu J.	Collision Dynamics of Protonated N-Acetylmethionine with Singlet Molecular Oxygen (a(1)Deltag): The Influence of the Amide Bond and Ruling Out the Complex-Mediated Mechanism at Low Energies.	J Phys Chem B	118(14)	3844-52	2014		
38070	24616556	Archak S., Nagaraju J.	Computational analyses of protein coded by rice (Oryza sativa japonica) cDNA (GI: 32984786) indicate lectin like Ca(2+) binding properties for Eicosapenta Peptide Repeats (EPRs).	Bioinformation	10(2)	63-7	2014	ILA1	IIP1
38071	24586634	Unbehend M., H?nniger S., V?squez GM., Ju?rez ML., Reisig D., McNeil J.N., Meagher R.L., Jenkins D.A., Heckel D.G., Groot A.T.	Geographic variation in sexual attraction of Spodoptera frugiperda corn- and rice-strain males to pheromone lures.	PLoS ONE	9(2)	e89255	2014		
38072	24506331	Arnal N., Quadrado M., Simon M., Mireau H.	A restorer-of-fertility like pentatricopeptide repeat gene directs ribonucleolytic processing within the coding sequence of rps3-rpl16 and orf240a mitochondrial transcripts in Arabidopsis thaliana.	Plant J.	78(1)	134-45	2014		
38073	24670252	Abe N., Asai H., Yago H., Oitome N.F., Itoh R., Crofts N., Nakamura Y., Fujita N.	Relationships between starch synthase I and branching enzyme isozymes determined using double mutant rice lines.	BMC Plant Biol.	14(1)	80	2014	SBE1,SSI,SBE3	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,OsSSI, SSS 1, SSS1, SS1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
38074	24625596	Setyawan W., Kurtz R.J.	Ab initio study of H, He, Li and Be impurity effect in tungsten Sigma3{1?1?2} and Sigma27{5?5?2} grain boundaries.	J Phys Condens Matter	26(13)	135004	2014		
38075	24678922	Mu X., Song T., Xu M., Lai C.K., Siu C.K., Laskin J., Chu I.K.	Discovery and Mechanistic Studies of Facile N-Terminal Calpha-C Bond Cleavages in the Dissociation of Tyrosine-Containing Peptide Radical Cations.	J Phys Chem B			2014		
38076	24634590	Santaweesuk S., Chapman R.S., Siriwong W.	Effects of an injury and illness prevention program on occupational safety behaviors among rice farmers in Nakhon Nayok Province, Thailand.	Risk Manag Healthc Policy	7	51-60	2014		
38077	24478940	Xue Y., Shui G., Wenk M.R.	TPS1 drug design for rice blast disease in magnaporthe oryzae.	Springerplus	3	18	2014		
38078	24594398	Chen P., Li X., Huo K., Wei X., Dai C., Lv C.	Promotion of photosynthesis in transgenic rice over-expressing of maize C4 phosphoenolpyruvate carboxylase gene by nitric oxide donors.	J. Plant Physiol.	171(6)	458-66	2014		
38079	24673767	Khalil H.B., Brunetti S.C., Pham U.M., Maret D., Laroche A., Gulick P.J.	Characterization of the caleosin gene family in the Triticeae.	BMC Genomics	15(1)	239	2014		
38080	24590240	Ramachandran P., Zhao Z., Singh R., Dhiman S.S., Choi J.H., Kim D., Haw J.R., Lee J.K.	Characterization of a beta-1,4-mannanase from a newly isolated strain of Pholiota adiposa and its application for biomass pretreatment.	Bioprocess Biosyst Eng			2014		
38081	24530725	Zhang J.J., Lu Y.C., Zhang J.J., Tan L.R., Yang H.	Accumulation and toxicological response of atrazine in rice crops.	Ecotoxicol. Environ. Saf.	102	105-12	2014		
38082	24588385	Siripornadulsil S., Thanwisai L., Siripornadulsil W.	Changes in the proteome of the cadmium-tolerant bacteria Cupriavidus taiwanensis KKU2500-3 in response to cadmium toxicity.	Can. J. Microbiol.	60(3)	121-31	2014		
38083	24634478	Liu T., Kim D.W., Niitsu M., Maeda S., Watanabe M., Kamio Y., Berberich T., Kusano T.	Polyamine oxidase 7 is a Terminal Catabolism-type Enzyme in Oryza sativa and is Specifically Expressed in Anthers.	Plant Cell Physiol.	55(6)	1110-22	2014		
38084	24604591	Cheal S.M., Punzalan B., Doran M.G., Evans M.J., Osborne J.R., Lewis J.S., Zanzonico P., Larson S.M.	Pairwise comparison of (89)Zr- and (124)I-labeled cG250 based on positron emission tomography imaging and nonlinear immunokinetic modeling: in vivo carbonic anhydrase IX receptor binding and internalization in mouse xenografts of clear-cell renal cell carcinoma.	Eur. J. Nucl. Med. Mol. Imaging	41(5)	985-94	2014		
38085	24584028	Chen J., Li X., Cheng C., Wang Y., Qin M., Zhu H., Zeng R., Fu X., Liu Z., Zhang G.	Characterization of epistatic interaction of QTLs LH8 and EH3 controlling heading date in rice.	Sci Rep	4	4263	2014	EF1,SE1,HD5	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
38086	24667992	Zhang C., Bai M.Y., Chong K.	Brassinosteroid-mediated regulation of agronomic traits in rice.	Plant Cell Rep.	33(5)	683-96	2014	_,D2,BZR1,ELF1,_,D61,SG1,BU1,_,BRD1, LIC,ILI1,BRL3,_,LC1,BRL1,DLT,D11,BRD2,D1,LC2	Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsBZR1, Os BZR1,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,OsGSR1, GASR7,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsSG1, Sg1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsC3H46, C3H46, OsLIC,ILI1, OsbHLH154, OsILI1,OsBRL3,RAVL1, RAVL ,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsBRL1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,OsLC2, OsVIL2, VIL2, OsVIL3
38087	24485316	Yang Y., Wan P.J., Hu X.X., Li G.Q.	RNAi mediated knockdown of the ryanodine receptor gene decreases chlorantraniliprole susceptibility in Sogatella furcifera.	Pestic Biochem Physiol	108	58-65	2014		
38088	24726274	Endo T., Uebayashi N., Ishida S., Ikeuchi M., Sato F.	Light energy allocation at PSII under field light conditions: How much energy is lost in NPQ-associated dissipation?	Plant Physiol. Biochem.			2014		
38089	24488967	Yang Y., Crofts A.J., Crofts N., Okita T.W.	Multiple RNA binding protein complexes interact with the rice prolamine RNA cis-localization zipcode sequences.	Plant Physiol.	164(3)	1271-82	2014	_,_,_,_,_	RBPQ, RBP-Q,RBPJ, RBP-J,RBPI, RBP-I,RBPK, RBP-K,RBPA, RBP-A
38090	24507455	Han J., Fang J., Wang C., Yin Y., Sun X., Leng X., Song C.	Grapevine microRNAs responsive to exogenous gibberellin.	BMC Genomics	15	111	2014		
38091	24625559	Wang W., Li G., Zhao J., Chu H., Lin W., Zhang D., Wang Z., Liang W.	DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice.	PLoS Genet.	10(3)	e1004154	2014	WOX9,DWT1,WOX9C,SLR1	OsWOX9, DWL1,OsWOX7, Os WOX7, WOX7, OsWOX9A,OsWOX9C, DWL2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
38092	24584249	Wang F., Zhang S., Liu M.G., Lin X.S., Liu H.J., Peng Y.L., Lin Y., Huang J.B., Luo C.X.	Genetic Diversity Analysis Reveals that Geographical Environment Plays a More Important Role than Rice Cultivar in Villosiclava virens Population Selection.	Appl. Environ. Microbiol.	80(9)	2811-20	2014		
38093	24590858	Folsom J.J., Begcy K., Hao X., Wang D., Walia H.	Rice FIE1 regulates seed size under heat stress by controlling early endosperm development.	Plant Physiol.	165(1)	238-48	2014		
38094	24575773	Shingaki-Wells R., Millar A.H., Whelan J., Narsai R.	What happens to plant mitochondria under low oxygen? An omics review of the responses to low oxygen and re-oxygenation.	Plant Cell Environ.			2014		
38095	24564253	Pereira A.L., Carazzolle M.F., Abe V.Y., de Oliveira ML., Domingues M.N., Silva J.C., Cernadas R.A., Benedetti C.E.	Identification of putative TAL effector targets of the citrus canker pathogens shows functional convergence underlying disease development and defense response.	BMC Genomics	15	157	2014		
38096	24634194	Chen Q.F., Ya H.Y., Feng Y.R., Jiao Z.	Expression of the Key Genes Involved in ABA Biosynthesis in Rice Implanted by Ion Beam.	Appl. Biochem. Biotechnol.	173(1)	239-47	2014		
38097	24684666	Fern?ndez G?mez J., Wilson Z.A.	A barley PHD finger transcription factor that confers male sterility by affecting tapetal development.	Plant Biotechnol. J.			2014		
38098	24478288	Kalia P., Vizcay-Barrena G., Fan J.P., Warley A., Di Silvio L., Huang J.	Nanohydroxyapatite shape and its potential role in bone formation: an analytical study.	J R Soc Interface	11(93)	20140004	2014		
38099	24473456	Kim D.H., Kim S.H., Kwon S.W., Lee J.K., Hong S.B.	Aspergillus cumulatus sp. nov., from Rice Straw and Air for Meju Fermentation.	J. Microbiol. Biotechnol.	24(3)	334-6	2014		
38100	24615161	Chong K., Xu Z.	Investment in plant research and development bears fruit in China.	Plant Cell Rep.	33(4)	541-50	2014		
38101	24478945	Bankeeree W., Lotrakul P., Prasongsuk S., Chaiareekij S., Eveleigh D.E., Kim S.W., Punnapayak H.	Effect of polyols on thermostability of xylanase from a tropical isolate of Aureobasidium pullulans and its application in prebleaching of rice straw pulp.	Springerplus	3	37	2014		
38102	24727792	Xiong H., Guo X., Kobayashi T., Kakei Y., Nakanishi H., Nozoye T., Zhang L., Shen H., Qiu W., Nishizawa N.K., Zuo Y.	Expression of peanut Iron Regulated Transporter 1 in tobacco and rice plants confers improved iron nutrition.	Plant Physiol. Biochem.	80C	83-89	2014		
38103	24648215	Li W.X., Zhao H.J., Pang W.Q., Cui H.R., Poirier Y., Shu Q.Y.	Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice.	Transgenic Res.	23(4)	585-99	2014		
38104	24482434	Liu L., Jin L., Huang X., Geng Y., Li F., Qin Q., Wang R., Ji S., Zhao S., Xie Q., Wei C., Xie C., Ding B., Li Y.	OsRFPH2-10, a RING-H2 Finger E3 Ubiquitin Ligase, Is Involved in Rice Antiviral Defense in the Early Stages of Rice dwarf virus Infection.	Mol Plant	7(6)	1057-60	2014	RFI2	OsRFPH2-10, RFPH2-10, OsRFI2 
38105	24728502	Zhuang P., Lu H., Li Z., Zou B., McBride M.B.	Multiple Exposure and Effects Assessment of Heavy Metals in the Population near Mining Area in South China.	PLoS ONE	9(4)	e94484	2014		
38106	24388510	Shen G., Zhan W., Chen H., Xing Y.	Dominance and epistasis are the main contributors to heterosis for plant height in rice.	Plant Sci.	215-216	11-8	2014		
38107	24475267	Fernandez J., Wilson R.A.	Characterizing roles for the glutathione reductase, thioredoxin reductase and thioredoxin peroxidase-encoding genes of Magnaporthe oryzae during rice blast disease.	PLoS ONE	9(1)	e87300	2014		
38108	24399256	Xu Y., Chen Y.H., Yu X.	Cell culture of the rice brown planthopper, Nilaparvata lugens St?l (Hemiptera: Delphacidae).	In Vitro Cell. Dev. Biol. Anim.	50(5)	384-8	2014		
38109	24720214	Ma L.M., Wang P.T., Wang S.G.	[Effect of flooding time length on mycorrhizal colonization of three AM fungi In two wetland plants].	Huan Jing Ke Xue	35(1)	263-70	2014		
38110	24291309	Narra M., Balasubramanian V., Mehta H., Dixit G., Madamwar D., Shah A.R.	Performance evaluation of anaerobic hybrid reactors with different packing media for treating wastewater of mild alkali treated rice straw in ethanol fermentation process.	Bioresour. Technol.	152	59-65	2014		
38111	24477586	Kalyana Babu B., Pandey D., Agrawal P.K., Sood S., Kumar A.	In-silico mining, type and frequency analysis of genic microsatellites of finger millet (Eleusine coracana (L.) Gaertn.): a comparative genomic analysis of NBS-LRR regions of finger millet with rice.	Mol. Biol. Rep.	41(5)	3081-90	2014		
38112	24440828	Zhou S.S., Sun Z., Ma W., Chen W., Wang M.Q.	De novo analysis of the Nilaparvata lugens (St?l) antenna transcriptome and expression patterns of olfactory genes.	Comp. Biochem. Physiol. Part D Genomics Proteomics	9	31-9	2014		
38113	24589383	Gu Y., Chen X., Liu Z., Zhou X., Zhang Y.	Effect of inoculum sources on the anaerobic digestion of rice straw.	Bioresour. Technol.	158C	149-155	2014		
38114	24667442	Dan Z., Liu P., Huang W., Zhou W., Yao G., Hu J., Zhu R., Lu B., Zhu Y.	Balance between a Higher Degree of Heterosis and Increased Reproductive Isolation: A Strategic Design for Breeding Inter-Subspecific Hybrid Rice.	PLoS ONE	9(3)	e93122	2014		
38115	24460537	Yan Y., Wang H., Hamera S., Chen X., Fang R.	miR444a has multiple functions in the rice nitrate-signaling pathway.	Plant J.	78(1)	44-55	2014	MIR444A,PT11,PT7,MADS57,MADS27,MADS23,NRT2.3,PTR6,PT1	OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,OsPT11, PHT1-11, OsPht1;11, ORYsa;PHT1;11,OsPT7, PHT1-7, OsPht1;7,OsMADS57, MADS-57,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS23, MADS-23,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsPT1, PHT1-1, OsPht1;1, Pht1;1
38116	24329817	Carvalho F.E., Ribeiro C.W., Martins M.O., Bonifacio A., Staats C.C., Andrade C.M., Cerqueira J.V., Margis-Pinheiro M., Silveira J.A.	Cytosolic APX knockdown rice plants sustain photosynthesis by regulation of protein expression related to photochemistry, Calvin cycle and photorespiration.	Physiol Plant	150(4)	632-45	2014		
38117	24667308	Wang S.T., Sun X.L., Hoshino Y., Yu Y., Jia B., Sun Z.W., Sun M.Z., Duan X.B., Zhu Y.M.	MicroRNA319 Positively Regulates Cold Tolerance by Targeting OsPCF6 and OsTCP21 in Rice (Oryza sativa L.).	PLoS ONE	9(3)	e91357	2014		
38118	24398922	Abu-Zaitoon YM.	Phylogenetic analysis of putative genes involved in the tryptophan-dependent pathway of auxin biosynthesis in rice.	Appl. Biochem. Biotechnol.	172(5)	2480-95	2014	YUCCA4,_,YUCCA13,YUCCA1,_,YUCCA12,YUCCA9,YUCCA11,YUCCA10,_,YUCCA14,YUCCA2,_,_,_,YUCCA3,COW1,TDC2,YUCCA5,YUCCA7,YUCCA6,TYDC,TDC1	OsYUCCA4, OsYUC4, YUC4,AO,OsYUCCA13, OsYUC13,OsYUCCA1, OsYUC1,AO, OsAO2, AO2,OsYUCCA12, OsYUC12,OsYUCCA9, OsYUC9, YUC9,OsYUCCA11, OsYUC11,OsYUCCA10, OsYUC10,NIT1, OsNIT2, NIT2,OsYUCCA14, OsYUC14,OsYUCCA2, OsYUC2,AAO3, OsAAO3, OsAO1, AO1,OsNIT1, NIT1,AO, OsAO, AAO, OsAAO,OsYUCCA3, OsYUC3,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsTDC2,OsYUCCA5, OsYUC5, YUC5,OsYUCCA7, OsYUC7,OsYUCCA6, OsYUC6,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3,OsTDC, TDC2, OsTDC1
38119	24505448	Li Y., Yue X., Que Y., Yan X., Ma Z., Talbot N.J., Wang Z.	Characterisation of four LIM protein-encoding genes involved in infection-related development and pathogenicity by the rice blast fungus Magnaporthe oryzae.	PLoS ONE	9(2)	e88246	2014		
38120	24553786	Dubey S., Shri M., Misra P., Lakhwani D., Bag S.K., Asif M.H., Trivedi P.K., Tripathi R.D., Chakrabarty D.	Heavy metals induce oxidative stress and genome-wide modulation in transcriptome of rice root.	Funct. Integr. Genomics	14(2)	401-17	2014		
38121	24466124	Yuan M., Lu Y., Zhu X., Wan H., Shakeel M., Zhan S., Jin B.R., Li J.	Selection and evaluation of potential reference genes for gene expression analysis in the brown planthopper, Nilaparvata lugens (Hemiptera: Delphacidae) using reverse-transcription quantitative PCR.	PLoS ONE	9(1)	e86503	2014		
38122	24686498	Hu Y., Xiong L., Huang W., Cai H., Luo Y., Zhang Y., Lu B.	Anti-inflammatory effect and prostate gene expression profiling of steryl ferulate on experimental rats with non-bacterial prostatitis.	Food Funct	5(6)	1150-9	2014		
38123	24507150	Zhou H., Zhou X., Zeng M., Liao B.H., Liu L., Yang W.T., Wu Y.M., Qiu Q.Y., Wang Y.J.	Effects of combined amendments on heavy metal accumulation in rice (Oryza sativa L.) planted on contaminated paddy soil.	Ecotoxicol. Environ. Saf.	101	226-32	2014		
38124	24393062	Abudayyak M., Ozden S., Alpertunga B., Ozhan G.	Effects of bentazone on lipid peroxidation and antioxidant systems in human erythrocytesin vitro.	Drug Chem Toxicol	37(4)	410-4	2014		
38125	24398893	Ravikumar G., Manimaran P., Voleti S.R., Subrahmanyam D., Sundaram R.M., Bansal K.C., Viraktamath B.C., Balachandran S.M.	Stress-inducible expression of AtDREB1A transcription factor greatly improves drought stress tolerance in transgenic indica rice.	Transgenic Res.	23(3)	421-39	2014		
38126	24668487	Dang X., Thi T.G., Dong G., Wang H., Edzesi W.M., Hong D.	Genetic diversity and association mapping of seed vigor in rice (Oryza sativa L.).	Planta	239(6)	1309-19	2014		
38127	24720210	Tan L.M., Peng P.Q., Li K.L., Li B.Z., Nie S.A., Ge T.D., Tong C.L., Wu J.S.	[Dynamics of the mineralization and transformation of rice photosynthesized carbon in paddy soils--a batch incubation experiment].	Huan Jing Ke Xue	35(1)	233-9	2014		
38128	24464311	Kim S.M., Suh J.P., Lee C.K., Lee J.H., Kim Y.G., Jena K.K.	QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.).	Mol. Genet. Genomics	289(3)	333-43	2014	_,_	OsSTA264, STA264, Duf6, qSCT11 ,CAMTA, qSCT1
38129	24290895	Mirzajani F., Askari H., Hamzelou S., Schober Y., R?mpp A., Ghassempour A., Spengler B.	Proteomics study of silver nanoparticles toxicity on Bacillus thuringiensis.	Ecotoxicol. Environ. Saf.	100	122-30	2014		
38130	24487101	Xu W., Xiong Y., Lai W., Xu Y., Li C., Xie M.	A homogeneous immunosensor for AFB1 detection based on FRET between different-sized quantum dots.	Biosens Bioelectron	56	144-50	2014		
38131	24434156	Qin X., Huang Q., Zhu L., Xiao H., Yao G., Huang W., Zhu R., Hu J., Zhu Y.	Interaction with Cu?? disrupts the RNA binding affinities of RNA recognition motif containing protein.	Biochem. Biophys. Res. Commun.	444(2)	116-20	2014		
38132	24420930	Choi S.C., Lee S., Kim S.R., Lee Y.S., Liu C., Cao X., An G.	Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.	Plant Physiol.	164(3)	1326-37	2014	EHD3,_,GHD7	Ehd3,OsSET33, SET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723 ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
38133	24454741	Zhou J., Xiao K., Wei B., Wang Z., Tian Y., Tian Y., Song Q.	Bioaccumulation of Cry1Ab protein from an herbivore reduces anti-oxidant enzyme activities in two spider species.	PLoS ONE	9(1)	e84724	2014		
38134	24617541	Nacano L.R., de Freitas R., Barbosa F.	Evaluation of seasonal dietary exposure to arsenic, cadmium and lead in schoolchildren through the analysis of meals served by public schools of ribeir?o preto, Brazil.	J. Toxicol. Environ. Health Part A	77(7)	367-74	2014		
38135	24557889	Du C., Lin J., Yang Y., Liu H., Li C., Zhou Y., Li Y., Tang D., Zhao X., Zhu Y., Liu X.	Molecular cloning, characterization and function analysis of a GDH gene from Sclerotinia sclerotiorum in rice.	Mol. Biol. Rep.	41(6)	3683-93	2014		
38136	24668677	Qiao L.X., Ding X., Wang H.C., Sui J.M., Wang J.S.	Characterization of the beta-1,3-glucanase gene in peanut (Arachis hypogaea L.) by cloning and genetic transformation.	Genet. Mol. Res.	13(1)	1893-904	2014		
38137	24469585	Kumar A., Mirza N., Charan T., Sharma N., Gaur V.S.	Isolation, Characterization and Immunolocalization of a Seed Dominant CaM from Finger Millet (Eleusine coracana L. Gartn.) for Studying Its Functional Role in Differential Accumulation of Calcium in Developing Grains.	Appl. Biochem. Biotechnol.	172(6)	2955-73	2014		
38138	24320692	Duan P., Rao Y., Zeng D., Yang Y., Xu R., Zhang B., Dong G., Qian Q., Li Y.	SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice.	Plant J.	77(4)	547-57	2014	SMG1	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1
38139	24615073	Zhu J.R., Zhou H., Pan Y.B., Lu X.	Genetic variability among the chloroplast genomes of sugarcane (Saccharum spp) and its wild progenitor species Saccharum spontaneum L.	Genet. Mol. Res.	13(AOP)	3037-47	2014		
38140	24469712	Lian L., Wang X., Zhu Y., He W., Cai Q., Xie H., Zhang M., Zhang J.	Physiological and photosynthetic characteristics of indica Hang2 expressing the sugarcane PEPC gene.	Mol. Biol. Rep.	41(4)	2189-97	2014		
38141	24682961	Doroshenk K.A., Tian L., Crofts A.J., Kumamaru T., Okita T.W.	Characterization of RNA binding protein RBP-P reveals a possible role in rice glutelin gene expression and RNA localization.	Plant Mol. Biol.	85(4-5)	381-94	2014	RBP-P	OsRBP-P
38142	24596173	Sun H., Tao J., Liu S., Huang S., Chen S., Xie X., Yoneyama K., Zhang Y., Xu G.	Strigolactones are involved in phosphate- and nitrate-deficiency-induced root development and auxin transport in rice.	J. Exp. Bot.			2014	D27,D3,D10	d27(d t), dt, dwf23, d27, OsD27,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10
38143	24397480	Zhang H., Yang B., Liu W.Z., Li H., Wang L., Wang B., Deng M., Liang W., Deyholos M.K., Jiang Y.Q.	Identification and characterization of CBL and CIPK gene families in canola (Brassica napus L.).	BMC Plant Biol.	14	8	2014		
38144	24599000	Lim J.H., Yang H.J., Jung K.H., Yoo S.C., Paek N.C.	Quantitative trait locus mapping and candidate gene analysis for plant architecture traits using whole genome re-sequencing in rice.	Mol. Cells	37(2)	149-60	2014		
38145	24531269	Zhang H., Feng X., Jiang C., Li Q., Liu Y., Gu C., Shang L., Li P., Lin Y., Larssen T.	Understanding the paradox of selenium contamination in mercury mining areas: High soil content and low accumulation in rice.	Environ. Pollut.	188	27-36	2014		
38146	24588812	Sanglard L.M., Martins S.C., Detmann K.C., Silva P.E., Lavinsky A.O., Silva M.M., Detmann E., Ara?jo WL., Damatta F.M.	Silicon nutrition alleviates the negative impacts of arsenic on the photosynthetic apparatus of rice leaves: an analysis of the key limitations of photosynthesis.	Physiol Plant			2014		
38147	24654985	Yoshikawa T., Ito M., Sumikura T., Nakayama A., Nishimura T., Kitano H., Yamaguchi I., Koshiba T., Hibara K.I., Nagato Y., Itoh J.I.	The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes.	Plant J.	78(6)	927-36	2014	TAR1,FIB	OsTAR1, FBL,fib, OsTAR2, TAR2
38148	24701196	Khan S.U., Nuruddin M.F., Ayub T., Shafiq N.	Effects of Different Mineral Admixtures on the Properties of Fresh Concrete.	ScientificWorldJournal	2014	986567	2014		
38149	24688443	Ayub T., Khan S.U., Memon F.A.	Mechanical Characteristics of Hardened Concrete with Different Mineral Admixtures: A Review.	ScientificWorldJournal	2014	875082	2014		
38150	24705135	Yin G., Xin X., Song C., Chen X., Zhang J., Wu S., Li R., Liu X., Lu X.	Activity levels and expression of antioxidant enzymes in the ascorbate-glutathione cycle in artificially aged rice seed.	Plant Physiol. Biochem.	80C	1-9	2014		
38151	24699514	Chen F., Jiang L., Zheng J., Huang R., Wang H., Hong Z., Huang Y.	Identification of differentially expressed proteins and phosphorylated proteins in rice seedlings in response to strigolactone treatment.	PLoS ONE	9(4)	e93947	2014		
38152	24614245	Kim J.S., Park H.M., Chae S., Lee T.H., Hwang D.J., Oh S.D., Park J.S., Song D.G., Pan C.H., Choi D., Kim Y.H., Nahm B.H., Kim Y.K.	A Pepper MSRB2 Gene Confers drought tolerance in Rice through the Protection of Chloroplast-Targeted Genes.	PLoS ONE	9(3)	e90588	2014	_,_,_,_,RAB16A	OsMSRB3, MSRB3,OsMSR1, MSR1, OsMSRB5, MSRB5,OsMSRB1, MSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1,PBD, PBGD, HEMC,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
38153	24549238	Xu J., He B., Wu B., Wang B., Wang C., Hu L.	An ionic liquid tolerant cellulase derived from chemically polluted microhabitats and its application in in situ saccharification of rice straw.	Bioresour. Technol.	157C	166-173	2014		
38154	24631338	Jung Y.S., Kim D.H., Hwang J.Y., Yun N.Y., Lee Y.H., Han S.B., Hwang B.Y., Lee M.S., Jeong H.S., Hong J.T.	Anti-inflammatory effect of tricin 4'-O-(threo-beta-guaiacylglyceryl) ether, a novel flavonolignan compound isolated from Njavara on in RAW264.7 cells and in ear mice edema.	Toxicol. Appl. Pharmacol.	277(1)	67-76	2014		
38155	24550897	Budot B.O., Encabo J.R., Ambita I.D., Atienza-Grande GA., Satoh K., Kondoh H., Ulat V.J., Mauleon R., Kikuchi S., Choi I.R.	Suppression of cell wall-related genes associated with stunting of Oryza glaberrima infected with Rice tungro spherical virus.	Front Microbiol	5	26	2014		
38156	24275521	Barik S., Sarkardas S., Singh A., Gautam V., Kumar P., Majee M., Sarkar A.K.	Phylogenetic analysis reveals conservation and diversification of micro RNA166 genes among diverse plant species.	Genomics	103(1)	114-21	2014		
38157	24354293	Musil S., P?tursd?ttir ?H., Raab A., Gunnlaugsd?ttir H., Krupp E., Feldmann J.	Speciation without chromatography using selective hydride generation: inorganic arsenic in rice and samples of marine origin.	Anal. Chem.	86(2)	993-9	2014		
38158	24674921	Kurusu T., Koyano T., Hanamata S., Kubo T., Noguchi Y., Yagi C., Nagata N., Yamamoto T., Ohnishi T., Okazaki Y., Kitahata N., Ando D., Ishikawa M., Wada S., Miyao A., Hirochika H., Shimada H., Makino A., Saito K., Ishida H., Kinoshita T., Kurata N., Kuchitsu K.	OsATG7 is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development.	Autophagy	10(5)	878-88	2014	ATG7	OsATG7, Atg7
38159	24595535	Furukawa K., Ichikawa S., Nigorikawa M., Sonoki T., Ito Y.	Enhanced production of reducing sugars from transgenic rice expressing exo-glucanase under the control of a senescence-inducible promoter.	Transgenic Res.	23(3)	531-7	2014		
38160	24618677	Ali M.P., Huang D., Nachman G., Ahmed N., Begum M.A., Rabbi M.F.	Will climate change affect outbreak patterns of planthoppers in bangladesh?	PLoS ONE	9(3)	e91678	2014		
38161	24033343	Trinh N.N., Huang T.L., Chi W.C., Fu S.F., Chen C.C., Huang H.J.	Chromium stress response effect on signal transduction and expression of signaling genes in rice.	Physiol Plant	150(2)	205-24	2014		
38162	24507130	Clasen B., Leitemperger J., Murussi C., Pretto A., Menezes C., Dalabona F., Marchezan E., Adaime M.B., Zanella R., Loro V.L.	Carbofuran promotes biochemical changes in carp exposed to rice field and laboratory conditions.	Ecotoxicol. Environ. Saf.	101	77-82	2014		
38163	24520898	Ikawa Y., Furutani A., Ochiai H., Tsuge S.	StoS, a hybrid histidine kinase sensor of Xanthomonas oryzae pv. oryzae, is activated by sensing low O2 concentration and is involved in stress tolerance and virulence.	Mol. Plant Microbe Interact.	27(6)	537-45	2014		
38164	24456138	Yuan M., Zhao J., Huang R., Li X., Xiao J., Wang S.	Rice MtN3/saliva/SWEET gene family: Evolution, expression profiling, and sugar transport.	J Integr Plant Biol	56(6)	559-70	2014	SWEET4,XA13,_,11N3,SWEET12,SWEET7E,SWEET6A,SWEET2A,SWEET1A,SWEET6B,SWEET3B,SWEET13,SWEET7B,SWEET16,SWEET1B,SWEET2B,SWEET7C,SWEET15,SWEET5,SWEET3A,SWEET7A	OsSWEET4,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,MtN3/saliva/SWEET gene family paralog,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,OsSWEET12,OsSWEET7e, SWEET7e,OsSWEET6a, SWEET6a,OsSWEET2a, SWEET2a,OsSWEET1a, SWEET1a,OsSWEET6b, SWEET6b,OsSWEET3b, SWEET3b,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsSWEET7b, SWEET7b,OsSWEET16,OsSWEET1b, SWEET1b,OsSWEET2b, SWEET2b,OsSWEET7c, SWEET7c,OsSWEET15,OsSWEET5,OsSWEET3a, SWEET3a,OsSWEET7a, SWEET7a
38165	24384682	Abe S.K., Inoue M., Sawada N., Iwasaki M., Ishihara J., Sasazuki S., Shimazu T., Yamaji T., Shibuya K., Tsugane S.	Rice, bread, noodle and cereal intake and colorectal cancer in Japanese men and women: the Japan Public Health Center-based prospective Study (JPHC Study).	Br. J. Cancer	110(5)	1316-21	2014		
38166	24389480	Choi J.S., Jeon M.H., Moon W.S., Moon J.N., Cheon E.J., Kim J.W., Jung S.K., Ji Y.H., Son S.W., Kim M.R.	In vivo hair growth-promoting effect of rice bran extract prepared by supercritical carbon dioxide fluid.	Biol. Pharm. Bull.	37(1)	44-53	2014		
38167	24533099	Yu H., Ji R., Ye W., Chen H., Lai W., Fu Q., Lou Y.	Transcriptome analysis of fat bodies from two brown planthopper (Nilaparvata lugens) populations with different virulence levels in rice.	PLoS ONE	9(2)	e88528	2014		
38168	24433542	Waters M.T., Scaffidi A., Sun Y.K., Flematti G.R., Smith S.M.	The karrikin response system of Arabidopsis.	Plant J.	79(4)	623-31	2014		
38169	24586663	Wang P., Cheng T., Wu S., Zhao F., Wang G., Yang L., Lu M., Chen J., Shi J.	Phylogeny and molecular evolution analysis of PIN-FORMED 1 in angiosperm.	PLoS ONE	9(2)	e89289	2014		
38170	24515831	Maruyama K., Urano K., Yoshiwara K., Morishita Y., Sakurai N., Suzuki H., Kojima M., Sakakibara H., Shibata D., Saito K., Shinozaki K., Yamaguchi-Shinozaki K.	Integrated analysis of the effects of cold and dehydration on rice metabolites, phytohormones, and gene transcripts.	Plant Physiol.	164(4)	1759-71	2014	_,_	CYP735A4, OsCYP735A4,CYP735A3
38171	24482761	Bahar O., Pruitt R., Luu D.D., Schwessinger B., Daudi A., Liu F., Ruan R., Fontaine-Bodin L., Koebnik R., Ronald P.	The Xanthomonas ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles.	PeerJ	2	e242	2014		
38172	24642810	Streb S., Zeeman S.C.	Replacement of the Endogenous Starch Debranching Enzymes ISA1 and ISA2 of Arabidopsis with the Rice Orthologs Reveals a Degree of Functional Conservation during Starch Synthesis.	PLoS ONE	9(3)	e92174	2014		
38173	24504629	Zhang W., Dong Y., Yang L., Ma B., Ma R., Huang F., Wang C., Hu H., Li C., Yan C., Chen J.	Small brown planthopper resistance loci in wild rice (Oryza officinalis).	Mol. Genet. Genomics	289(3)	373-82	2014		
38174	24595621	Tan J., He S., Yan S., Li Y., Li H., Zhang H., Zhao L., Li L.	Exogenous EDDS modifies copper-induced various toxic responses in rice.	Protoplasma	251(5)	1213-21	2014	SULTR2;2,MTI1A,HMA9	OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsHMA9 ,oshma9-1, oshma9-2, HMA9
38175	24575721	Lee K.W., Chen P.W., Yu S.M.	Metabolic adaptation to sugar/O2 deficiency for anaerobic germination and seedling growth in rice.	Plant Cell Environ.			2014		
38176	24608025	Chen L., Tong Q., Ren F., Zhu G.	Pasting and rheological properties of rice starch as affected by pullulan.	Int. J. Biol. Macromol.	66	325-31	2014		
38177	24491293	Kaur B., Oberoi H.S., Chadha B.S.	Enhanced cellulase producing mutants developed from heterokaryotic Aspergillus strain.	Bioresour. Technol.	156C	100-107	2014		
38178	24456533	Peng C., Wang Y., Liu F., Ren Y., Zhou K., Lv J., Zheng M., Zhao S., Zhang L., Wang C., Jiang L., Zhang X., Guo X., Bao Y., Wan J.	FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endosperm.	Plant J.	77(6)	917-30	2014	FLO6,ISA1	SIP4,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1
38179	24463428	Sato T., Miyanoiri Y., Takeda M., Naoe Y., Mitani R., Hirano K., Takehara S., Kainosho M., Matsuoka M., Ueguchi-Tanaka M., Kato H.	Expression and purification of a GRAS domain of SLR1, the rice DELLA protein.	Protein Expr. Purif.	95	248-58	2014		
38180	24291007	Song X.S., Li H.P., Zhang J.B., Song B., Huang T., Du X.M., Gong A.D., Liu Y.K., Feng Y.N., Agboola R.S., Liao Y.C.	trehalose 6-phosphate phosphatase is required for development, virulence and mycotoxin biosynthesis apart from trehalose biosynthesis in Fusarium graminearum.	Fungal Genet. Biol.	63	24-41	2014		
38181	24444413	Salas-Leiva DE., Meerow A.W., Francisco-Ortega J., Calonje M., Griffith M.P., Stevenson D.W., Nakamura K.	Conserved genetic regions across angiosperms as tools to develop single-copy nuclear markers in gymnosperms: an example using cycads.	Mol Ecol Resour	14(4)	831-45	2014		
38182	24472345	Zhang X., Xu C., Zhang C., Liu Y., Xie Y., Liu X.	Established a new double antibodies sandwich enzyme-linked immunosorbent assay for detecting Bacillus thuringiensis (Bt) Cry1Ab toxin based single-chain variable fragments from a na?ve mouse phage displayed library.	Toxicon	81	13-22	2014		
38183	24498057	Cai Y., Vega-S?nchez ME., Park C.H., Bellizzi M., Guo Z., Wang G.L.	RBS1, an RNA binding protein, interacts with Spin1 and is involved in flowering time control in rice.	PLoS ONE	9(1)	e87258	2014	_,_,SPL11,HD3A	Spin1, SPIN1,RBS1, Rbs1,spl11, spl11*, OsPUB11, PUB11,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
38184	24650428	Mar T., Liu W., Wang X.	Proteomic analysis of interaction between P7-1 of Southern rice black-streaked dwarf virus and the insect vector reveals diverse insect proteins involved in successful transmission.	J Proteomics	102C	83-97	2014		
38185	24734090	Sadeghi N., Oveisi M.R., Jannat B., Hajimahmoodi M., Behfar A., Behzad M., Norouzi N., Oveisi M., Jannat B.	Simultaneous Measurement of Zinc, Copper, Lead and Cadmium in Baby Weaning Food and Powder Milk by DPASV.	Iran J Pharm Res	13(1)	345-9	2014		
38186	24489758	Craig S.M., Reagon M., Resnick L.E., Caicedo A.L.	Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US.	PLoS ONE	9(1)	e86647	2014	SAF,DPL2,SAM,DPL1,S5	SaF, OsFbox019, OsFbox19, Os_F0070,,SaM ,,S5-3, S5-4
38187	24504074	Zain N.A., Ismail M.R., Mahmood M., Puteh A., Ibrahim M.H.	Alleviation of water stress effects on MR220 rice by application of periodical water stress and potassium fertilization.	Molecules	19(2)	1795-819	2014		
38188	24616563	Samanta A., Datta A.K., Datta S.	Study on Folate Binding Domain of Dihydrofolate Reductase in Different Plant species and Human beings.	Bioinformation	10(2)	101-4	2014		
38189	24466268	Mishra A.K., Muthamilarasan M., Khan Y., Parida S.K., Prasad M.	Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.).	PLoS ONE	9(1)	e86852	2014		
38190	24392772	Candow D.G., Zello G.A., Ling B., Farthing J.P., Chilibeck P.D., McLeod K., Harris J., Johnson S.	Comparison of creatine supplementation before versus after supervised resistance training in healthy older adults.	Res Sports Med	22(1)	61-74	2014		
38191	24372757	Petrik D.L., Karlen S.D., Cass C.L., Padmakshan D., Lu F., Liu S., Le Bris P., Antelme S., Santoro N., Wilkerson C.G., Sibout R., Lapierre C., Ralph J., Sedbrook J.C.	p-coumaroyl-CoA:monolignol transferase (PMT) acts specifically in the lignin biosynthetic pathway in Brachypodium distachyon.	Plant J.	77(5)	713-26	2014		
38192	24578651	Rungrodnimitchai S.	Rapid preparation of biosorbents with high ion exchange capacity from rice straw and bagasse for removal of heavy metals.	ScientificWorldJournal	2014	634837	2014		
38193	24492537	Ji Y., Tu P., Wang K., Gao F., Yang W., Zhu Y., Li S.	Defining reference genes for quantitative real-time PCR analysis of anther development in rice.	Acta Biochim. Biophys. Sin. (Shanghai)	46(4)	305-12	2014	_,_,_,_	OsRH2, RH2, eIF4A-3,GAPDH, OsGAPDH, OsGapC2,UPF3,OsPP13, PPP6 
38194	24646527	Chao J., Jin J., Wang D., Han R., Zhu R., Zhu Y., Li S.	Cytological and Transcriptional Dynamics Analysis of Host Plant Revealed Stage-Specific Biological Processes Related to Compatible Rice-Ustilaginoidea virens Interaction.	PLoS ONE	9(3)	e91391	2014		
38195	24635058	Lu G., Wu F.Q., Wu W., Wang H.J., Zheng X.M., Zhang Y., Chen X., Zhou K., Jin M., Cheng Z., Li X., Jiang L., Wang H., Wan J.	Rice ltg1 is involved in adaptive growth and fitness under low ambient temperature.	Plant J.	78(3)	468-80	2014	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1
38196	24493253	Li Y., Peng Y., Hallerman E.M., Wu K.	Biosafety management and commercial use of genetically modified crops in China.	Plant Cell Rep.	33(4)	565-73	2014		
38197	24663342	Mochizuki S., Jikumaru Y., Nakamura H., Koiwai H., Sasaki K., Kamiya Y., Ichikawa H., Minami E., Nishizawa Y.	Ubiquitin ligase EL5 maintains the viability of root meristems by influencing cytokinin-mediated nitrogen effects in rice.	J. Exp. Bot.	65(9)	2307-18	2014		
38198	24460219	Han C., Yang P., Sakata K., Komatsu S.	Quantitative Proteomics Reveals the Role of Protein Phosphorylation in Rice Embryos during Early Stages of Germination.	J. Proteome Res.	13(3)	1766-82	2014		
38199	24420860	Guo L., Guo C., Li M., Wang W., Luo C., Zhang Y., Chen L.	Suppression of expression of the putative receptor-like kinase gene NRRB enhances resistance to bacterial leaf streak in rice.	Mol. Biol. Rep.	41(4)	2177-87	2014		
38200	24603050	Basu S., Roychoudhury A., Sengupta D.N.	Deciphering the Role of various cis-acting regulatory elements in controlling SamDC gene expression in Rice.	Plant Signal Behav	9(3)		2014		
38272	24641700	Urayama S.I., Fukuhara T., Moriyama H., Toh-E A., Kawamoto S., Urayama S., Fukuhara T., Moriyama H.	Heterologous expression of a gene of Magnaporthe oryzae chrysovirus 1 strain A disrupts growth of the human pathogenic fungus Cryptococcus neoformans.	Microbiol. Immunol.	58(5)	294-302	2014		
38273	24442786	Zhang C., Zhang X., Shen S.	Proteome analysis for antifungal effects of Bacillus subtilis KB-1122 on Magnaporthe grisea P131.	World J. Microbiol. Biotechnol.	30(6)	1763-74	2014		
38274	24681716	Xu X., Lv Q., Shang J., Pang Z., Zhou Z., Wang J., Jiang G., Tao Y., Xu Q., Li X., Zhao X., Li S., Xu J., Zhu L.	Excavation of Pid3 Orthologs with Differential Resistance Spectra to Magnaporthe oryzae in Rice Resource.	PLoS ONE	9(3)	e93275	2014		
38275	24556665	Chen C., Chen H., Lin Y.S., Shen J.B., Shan J.X., Qi P., Shi M., Zhu M.Z., Huang X.H., Feng Q., Han B., Jiang L., Gao J.P., Lin H.X.	A two-locus interaction causes interspecific hybrid weakness in rice.	Nat Commun	5	3357	2014	_,RLCK314,HWI1	Hwi2, OsSub9, SUB9,OsRLCK314, 25L2,25L1
38276	24666983	V?ry AA., Nieves-Cordones M., Daly M., Khan I., Fizames C., Sentenac H.	Molecular biology of K(+) transport across the plant cell membrane: What do we learn from comparison between plant species?	J. Plant Physiol.	171(9)	748-69	2014		
38277	24648012	Wan P.J., Jia S., Li N., Fan J.M., Li G.Q.	A Halloween gene shadow is a potential target for RNA-interference-based pest management in the small brown planthopper Laodelphax striatellus.	Pest Manag. Sci.	71(2)	199-206	2014		
38278	24450747	Schmelz E.A., Huffaker A., Sims J.W., Christensen S.A., Lu X., Okada K., Peters R.J.	Biosynthesis, elicitation and roles of monocot terpenoid phytoalexins.	Plant J.	79(4)	659-678	2014		
38279	24535191	Song Y., Zhang H., Chen C., Wang G., Zhuang K., Cui J., Shen Z.	Proteomic analysis of copper-binding proteins in excess copper-stressed rice roots by immobilized metal affinity chromatography and two-dimensional electrophoresis.	Biometals	27(2)	265-76	2014		
38280	24395199	Li X., Han B., Xu M., Han L., Zhao Y., Liu Z., Dong H., Zhang C.	Plant growth enhancement and associated physiological responses are coregulated by ethylene and gibberellin in response to harpin protein Hpa1.	Planta	239(4)	831-46	2014		
38281	24624317	Okamoto K., Uchii A., Kanawaku R., Yanase H.	Bioconversion of xylose, hexoses and biomass to ethanol by a new isolate of the white rot basidiomycete Trametes versicolor.	Springerplus	3	121	2014		
38282	24548060	van Veen H., Akman M., Jamar D.C., Vreugdenhil D., Kooiker M., van Tienderen P., Voesenek L.A., Schranz M.E., Sasidharan R.	Group VII Ethylene Response Factor diversification and regulation in four species from flood-prone environments.	Plant Cell Environ.	37(10)	2421-32	2014		
38283	24649705	Bai J., Sun X., Zhang C., Gong C., Hu J., Zhang J.	Mechanism and kinetics study on the ozonolysis reaction of 2,3,7,8-TCDD in the atmosphere.	J Environ Sci (China)	26(1)	181-8	2014		
38284	24532719	Xie Y., Wu G., Tang J., Luo R., Patterson J., Liu S., Huang W., He G., Gu S., Li S., Zhou X., Lam T.W., Li Y., Xu X., Wong G.K., Wang J.	SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.	Bioinformatics	30(12)	1660-6	2014		
38285	24520314	Giordano A., Cogan N.O., Kaur S., Drayton M., Mouradov A., Panter S., Schrauf G.E., Mason J.G., Spangenberg G.C.	Gene discovery and molecular marker development, based on high-throughput transcript sequencing of Paspalum dilatatum Poir.	PLoS ONE	9(2)	e85050	2014		
38286	24454828	Li L., Wang J., Zhang Z., Wang Y., Liu M., Jiang H., Chai R., Mao X., Qiu H., Liu F., Sun G.	MoPEX19, which is essential for maintenance of peroxisomal structure and woronin bodies, is required for metabolism and development in the rice blast fungus.	PLoS ONE	9(1)	e85252	2014		
38287	24503158	Chang C.W., Williams S.J., Cou?ago RM., Kobe B.	Structural Basis of Interaction of Bipartite Nuclear Localization Signal from Agrobacterium VirD2 with Rice Importin-alpha	Mol Plant	7(6)	1061-4	2014		
38288	24688383	Shivanna G.B., Venkateswaran G.	Phytase Production by Aspergillus niger CFR 335 and Aspergillus ficuum SGA 01 through Submerged and Solid-State Fermentation.	ScientificWorldJournal	2014	392615	2014		
38289	24656338	Kravchik M., Damodharan S., Stav R., Arazi T.	Generation and characterization of a tomato DCL3-silencing mutant.	Plant Sci.	221-222	81-9	2014		
38290	24502996	Kosolsaksakul P., Farmer J.G., Oliver I.W., Graham M.C.	Geochemical associations and availability of cadmium (Cd) in a paddy field system, northwestern Thailand.	Environ. Pollut.	187	153-61	2014		
38291	24570169	Cenci A., Guignon V., Roux N., Rouard M.	Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots.	Plant Mol. Biol.	85(1-2)	63-80	2014		
38292	24548184	Xia Y., Wang Y., Zhang B., Xu G., Ai L.	Effect of cultural conditions on antrodin C production by basidiomycete Antrodia camphorata in solid state fermentation.	Biotechnol. Appl. Biochem.	61(6)	724-32	2014		
38293	24676962	Cabanos C., Kato N., Amari Y., Fujiwara K., Ohno T., Shimizu K., Goto T., Shimada M., Kuroda M., Masuda T., Takaiwa F., Utsumi S., Nagaoka S., Maruyama N.	Development of a novel transgenic rice with hypocholesterolemic activity via high-level accumulation of the alpha' subunit of soybean beta-conglycinin.	Transgenic Res.	23(4)	609-20	2014		
38294	24613105	Kawauchi M., Iwashita K.	Functional analysis of histone deacetylase and its role in stress response, drug resistance and solid-state cultivation in Aspergillus oryzae.	J. Biosci. Bioeng.	118(2)	172-6	2014		
38295	24661044	Feldman T., Mato A.R., Chow K.F., Protomastro E.A., Yannotti K.M., Bhattacharyya P., Yang X., Donato M.L., Rowley S.D., Carini C., Valentinetti M., Smith J., Gadaleta G., Bejot C., Stives S., Timberg M., Kdiry S., Pecora A.L., Beaven A.W., Goy A.	Addition of lenalidomide to rituximab, ifosfamide, carboplatin, etoposide (RICER) in first-relapse/primary refractory diffuse large B-cell lymphoma.	Br. J. Haematol.	166(1)	77-83	2014		
38296	24548197	Yasutomi M., Kosaka T., Kawakita A., Hayashi H., Okazaki S., Murai H., Miyagawa K., Mayumi M., Ohshima Y.	Rice protein-induced enterocolitis syndrome with transient specific IgE to boiled rice but not to retort-processed rice.	Pediatr Int	56(1)	110-2	2014		
38297	24502317	Amaya-Gonz?lez S., de-Los-Santos-?lvarez N., Miranda-Ordieres AJ., Lobo-Casta??n MJ.	Aptamer binding to celiac disease-triggering hydrophobic proteins: a sensitive gluten detection approach.	Anal. Chem.	86(5)	2733-9	2014		
38298	24632440	Kim H.J., Han J.H., Kim K.S., Lee Y.H.	Comparative functional analysis of the velvet gene family reveals unique roles in fungal development and pathogenicity in Magnaporthe oryzae.	Fungal Genet. Biol.	66	33-43	2014		
38299	24515640	Liu S., Liang Q.M., Zhou W.W., Jiang Y.D., Zhu Q.Z., Yu H., Zhang C.X., Gurr G.M., Zhu Z.R.	RNA interference of NADPH-cytochrome P450 reductase of the rice brown planthopper, Nilaparvata lugens, increases susceptibility to insecticides.	Pest Manag. Sci.			2014		
38300	24407603	Zhang J.Y., Qu S.C., Qiao Y.S., Zhang Z., Guo Z.R.	Overexpression of the Malus hupehensis MhNPR1 gene increased tolerance to salt and osmotic stress in transgenic tobacco.	Mol. Biol. Rep.	41(3)	1553-61	2014		
38301	24613924	Peng H., Zheng Y., Chen M., Wang Y., Xiao Y., Gao Y.	A starch-binding domain identified in alpha-amylase (AmyP) represents a new family of carbohydrate-binding modules that contribute to enzymatic hydrolysis of soluble starch.	FEBS Lett.	588(7)	1161-7	2014		
38302	24423401	Ji Z., Zakria M., Zou L., Xiong L., Zheng L., Ji G., Chen G.	Genetic Diversity of Transcriptional Activator-like Effectors genes in Chinese Isolates of Xanthomonas oryzae pv. oryzicola.	Phytopathology	104(7)	672-82	2014		
38303	24667993	Wang H., Liu R., Wang J., Wang P., Shen Y., Liu G.	The Arabidopsis kinesin gene AtKin-1 plays a role in the nuclear division process during megagametogenesis.	Plant Cell Rep.	33(5)	819-28	2014		
38304	24423072	Inokuma K., Hasunuma T., Kondo A.	Efficient yeast cell-surface display of exo- and endo-cellulase using the SED1 anchoring region and its original promoter.	Biotechnol Biofuels	7(1)	8	2014		
38305	24548461	Abe M., Yuki Y., Kurokawa S., Mejima M., Kuroda M., Park E.J., Scheller J., Nakanishi U., Kiyono H.	A rice-based soluble form of a murine TNF-specific llama variable domain of heavy-chain antibody suppresses collagen-induced arthritis in mice.	J. Biotechnol.	175	45-52	2014		
38306	24720198	Song L.F., Wang Y., Wu J.S., LI Y., Li Y.Y., Meng C., Li H., Zhang M.Y.	[Impact of rice agriculture on nitrogen and phosphorus exports in streams in hilly red soil earth region of central subtropics].	Huan Jing Ke Xue	35(1)	150-6	2014		
38307	24520158	Zhang C., Gschwend A.R., Ouyang Y., Long M.	Evolution of gene structural complexity: An alternative-splicing based model accounts for intron-containing retrogenes.	Plant Physiol.	165(1)	412-23	2014		
38308	24651725	Xu S., Zhou Z., Lu H., Luo X., Lan Y.	Improved algorithms for the classification of rough rice using a bionic electronic nose based on PCA and the Wilks distribution.	Sensors (Basel)	14(3)	5486-501	2014		
38309	24548063	Yang F., Tian F., Li X., Fan S., Chen H., Wu M., Yang C.H., He C.	The degenerate EAL-GGDEF domain protein Filp functions as a cyclic di-GMP receptor and specifically interacts with the PilZ-domain protein PXO_02715 to regulate virulence in Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	27(6)	578-89	2014		
38310	24470637	Denanc? N., Szurek B., No?l LD.	Emerging functions of nodulin-like proteins in non-nodulating plant species.	Plant Cell Physiol.	55(3)	469-74	2014	UMAMIT4,ENODL21,_,UMAMIT13,UMAMIT2,UMAMIT1,ENODL6,_,ENODL7,ENODL10,SWEET7E,ENODL19,SWEET13,ENODL3,ENODL1,ENODL5,SWEET7B,SWEET16,ENODL22,ENODL8,_,11N3,XA13,ENODL18,ENODL17,ENODL9,ENODL2,ENODL14,SWEET6B,ENODL4,ENODL13,SWEET5,AM25,UMAMIT9,ENODL15,NIP4;1,NIP1;3,NIP3;3,ENODL20,ENODL12,NIP3;1,UMAMIT8,_,_,UMAMIT5,LSI6,UMAMIT10,UMAMIT7,SWEET2B,UMAMIT3,SWEET3B,SWEET7A,SWEET1A,SWEET6A,SWEET2A,SWEET3A,NIP1;1,SWEET12,LSI1,NIP3;2,SWEET15,NIP1;2,SWEET7C,UMAMIT11,ENODL11,UMAMIT6,UMAMIT15,UMAMIT12,ENODL16,_,_,_,SWEET1B,_,SWEET4,_,_,SWEET7D,MFS4,UMAMIT14,MFS1,MFS2,MFS3,MFS7,MFS6,ENODL24,MFS5,_,ENODL23,MFS8	OsUMAMIT4,OsENODL21,OsSNDP6, SNDP6,OsUMAMIT13,OsUMAMIT2,OsUMAMIT1,OsENODL6, OsELA2, ELA2, OsEnS-24,OsSNDP4, SNDP4,OsENODL7,OsENODL10,OsSWEET7e, SWEET7e,OsENODL19,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25,OsENODL3,OsENODL1, OsELA1, ELA1,OsENODL5,OsSWEET7b, SWEET7b,OsSWEET16,OsENODL22,OsENODL8,OsSNDP5, SNDP5,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsENODL18, OsELA3, ELA3 ,OsENODL17,OsENODL9,OsENODL2,OsENODL14,OsSWEET6b, SWEET6b,OsENODL4,OsENODL13,OsSWEET5,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,OsUMAMIT9,OsENODL15,OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1,OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3,OsENODL20,OsENODL12,OsNIP3;1, NIP3-1, OsNIP3.1, NIP3.1,OsUMAMIT8,OsSNDP9, SNDP9,OsSNDP10, SNDP10,OsUMAMIT5,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsUMAMIT10,OsUMAMIT7,OsSWEET2b, SWEET2b,OsUMAMIT3,OsSWEET3b, SWEET3b,OsSWEET7a, SWEET7a,OsSWEET1a, SWEET1a,OsSWEET6a, SWEET6a,OsSWEET2a, SWEET2a,OsSWEET3a, SWEET3a,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsSWEET12,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsSWEET15,OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2,OsSWEET7c, SWEET7c,OsUMAMIT11,OsENODL11,OsUMAMIT6,OsUMAMIT15,OsUMAMIT12,OsENODL16,OsSNDP2, SNDP2,OsSNDP8, SNDP8,OsSNDP7, SNDP7,OsSWEET1b, SWEET1b,OsSNDP3, SNDP3,OsSWEET4,,,OsSWEET7d, SWEET7d,OsMFS4,OsUMAMIT14,OsMFS1,OsMFS2,OsMFS3,OsMFS7,OsMFS6,OsENODL24,OsMFS5,OsSNDP1, SNDP1,OsENODL23,OsMFS8
38311	24638148	Takaiwa F., Yang L.	Development of a rice-based peptide vaccine for Japanese cedar and cypress pollen allergies.	Transgenic Res.	23(4)	573-84	2014		
38312	24682189	Senadheera S.P., Ekanayake S., Wanigatunge C.	Antioxidant potential of green leafy porridges.	Ceylon Med J	59(1)	4-8	2014		
38313	24669667	Das J., Ramesh K.V., Maithri U., Mutangana D., Suresh C.K.	Response of aerobic rice to Piriformospora indica.	Indian J. Exp. Biol.	52(3)	237-51	2014		
38314	24291601	Agrawal C., Sen S., Singh S., Rai S., Singh P.K., Singh V.K., Rai L.C.	Comparative proteomics reveals association of early accumulated proteins in conferring butachlor tolerance in three N(2)-fixing Anabaena spp.	J Proteomics	96	271-90	2014		
38315	24520386	Yang H., Li J., Yang J., Wang H., Zou J., He J.	Effects of nitrogen application rate and leaf age on the distribution pattern of leaf SPAD readings in the rice canopy.	PLoS ONE	9(2)	e88421	2014		
38316	24643567	Kanzaki H., Yoshida K., Saitoh H., Tamiru M., Terauchi R.	Protoplast Cell Death Assay to Study Magnaporthe oryzae AVR Gene Function in Rice.	Methods Mol. Biol.	1127	269-75	2014		
38317	24572275	Song E.S., Kim S.Y., Noh T.H., Cho H., Chae S.C., Lee B.M.	PCR-based assay for rapid and specific detection of the new Xanthomonas oryzae pv. oryzae K3a race using an AFLP-derived marker.	J. Microbiol. Biotechnol.	24(6)	732-9	2014		
38318	24482523	Huang S.L., Chen H., Hu A., Tuan N.N., Yu C.P.	Draft Genome Sequence of Pseudomonas nitroreducens Strain TX1, Which Degrades Nonionic Surfactants and Estrogen-Like Alkylphenols.	Genome Announc	2(1)	e01262-13	2014		
38319	24457353	Cheng Z., Lin J., Lin T., Xu M., Huang Z., Yang Z., Huang X., Zheng J.	Genome-wide analysis of radiation-induced mutations in rice (Oryza sativa L. ssp. indica).	Mol Biosyst	10(4)	795-805	2014		
38320	24487649	Majhi B.B., Shah J.M., Veluthambi K.	A novel T-DNA integration in rice involving two interchromosomal translocations.	Plant Cell Rep.	33(6)	929-44	2014		
38321	24704987	Ayadi M., Mieulet D., Fabre D., Verdeil J.L., Vernet A., Guiderdoni E., Masmoudi K.	Functional analysis of the durum wheat gene TdPIP2;1 and its promoter region in response to abiotic stress in rice.	Plant Physiol. Biochem.	79	98-108	2014		
38322	24602153	de Lange O., Binder A., Lahaye T.	From dead leaf, to new life: TAL effectors as tools for synthetic biology.	Plant J.	78(5)	753-71	2014		
38373	24032447	Dang F., Wang Y., She J., Lei Y., Liu Z., Eulgem T., Lai Y., Lin J., Yu L., Lei D., Guan D., Li X., Yuan Q., He S.	Overexpression of CaWRKY27, a subgroup IIe WRKY transcription factor of Capsicum annuum, positively regulates tobacco resistance to Ralstonia solanacearum infection.	Physiol Plant	150(3)	397-411	2014		
38374	24457348	Karthikeyan S., Sekaran G.	In situ generation of a hydroxyl radical by nanoporous activated carbon derived from rice husk for environmental applications: kinetic and thermodynamic constants.	Phys Chem Chem Phys	16(9)	3924-33	2014		
38375	24413664	Duitama J., Quintero J.C., Cruz D.F., Quintero C., Hubmann G., Foulqui?-Moreno MR., Verstrepen K.J., Thevelein J.M., Tohme J.	An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments.	Nucleic Acids Res.	42(6)	e44	2014		
38376	24554438	Makino T., Shiraki Y., Mizukami H.	Interaction of gypsum and the rhizome of Anemarrhena asphodeloides plays an important role in anti-allergic effects of byakkokakeishito in mice.	J Nat Med	68(3)	505-12	2014		
38377	24518221	Jo K., Kwon H.B., Kim S.	Time-series RNA-seq analysis package (TRAP) and its application to the analysis of rice, Oryza sativa L. ssp. Japonica, upon drought stress.	Methods	67(3)	364-72	2014		
38378	24584576	Babu B.K., Meena V., Agarwal V., Agrawal P.K.	Population structure and genetic diversity analysis of Indian and exotic rice (Oryza sativa L.) accessions using SSR markers.	Mol. Biol. Rep.	41(7)	4329-39	2014		
38379	24656332	Al Atalah B., Smagghe G., Van Damme EJ.	Orysata, a jacalin-related lectin from rice, could protect plants against biting-chewing and piercing-sucking insects.	Plant Sci.	221-222	21-8	2014	SALT	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
38380	24399024	Dubey S.C., Tripathi A., Upadhyay B.K., Deka U.K.	Diversity of Rhizoctonia solani associated with pulse crops in different agro-ecological regions of India.	World J. Microbiol. Biotechnol.	30(6)	1699-715	2014		
38381	24218206	Deborde C., Jacob D.	MeRy-B, a metabolomic database and knowledge base for exploring plant primary metabolism.	Methods Mol. Biol.	1083	3-16	2014		
38382	24453041	Wen F., Zhu H., Li P., Jiang M., Mao W., Ong C., Chu Z.	Genome-Wide Evolutionary Characterization and Expression Analyses of WRKY Family Genes in Brachypodium distachyon.	DNA Res.	21(3)	327-39	2014		
38383	24418273	Miller-Cushon EK., Montoro C., Ipharraguerre I.R., Bach A.	Dietary preference in dairy calves for feed ingredients high in energy and protein.	J. Dairy Sci.	97(3)	1634-44	2014		
38384	24415207	Hwang S.G., Hwang J.G., Kim D.S., Jang C.S.	Genome-wide DNA polymorphism and transcriptome analysis of an early-maturing rice mutant.	Genetica	142(1)	73-85	2014	_	
38385	24659814	House M.A., Griswold C.K., Lukens L.N.	Evidence for Selection on Gene Expression in Cultivated Rice (Oryza sativa).	Mol. Biol. Evol.	31(6)	1514-25	2014		
38386	24727355	Dai L., Wu B., Tan F., He M., Wang W., Qin H., Tang X., Zhu Q., Pan K., Hu Q.	Engineered hydrochar composites for phosphorus removal/recovery: Lanthanum doped hydrochar prepared by hydrothermal carbonization of lanthanum pretreated rice straw.	Bioresour. Technol.	161C	327-332	2014		
38387	24633442	Shao Y., Lei M., Mao Z., Zhou Y., Chen F.	Insights into Monascus biology at the genetic level.	Appl. Microbiol. Biotechnol.	98(9)	3911-22	2014		
38388	24462689	Zhang Y., Yan C., Kuang H.	GC content fluctuation around plant small RNA-generating sites.	FEBS Lett.	588(5)	764-9	2014		
38389	24466314	Zhou J., Yu F., Wang X., Yang Y., Yu C., Liu H., Cheng Y., Yan C., Chen J.	Specific expression of DR5 promoter in rice roots using a tCUP derived promoter-reporter system.	PLoS ONE	9(1)	e87008	2014		
38390	24466254	Qiu Z., Jiang H., Ding J., Hu Y., Shang X.	pollen and phytolith evidence for rice cultivation and vegetation change during the mid-late holocene at the Jiangli site, Suzhou, East China.	PLoS ONE	9(1)	e86816	2014		
38391	23706976	Hsu C.C., Jhang H.R., Chang W.T., Lin C.H., Shin S.J., Hwang S.J., Huang M.C.	Associations between dietary patterns and kidney function indicators in type 2 diabetes.	Clin Nutr	33(1)	98-105	2014		
38392	24489765	Wan P.J., Jia S., Li N., Fan J.M., Li G.Q.	RNA interference depletion of the Halloween gene disembodied implies its potential application for management of planthopper Sogatella furcifera and Laodelphax striatellus.	PLoS ONE	9(1)	e86675	2014		
38393	24516534	Sarkar A., Reinhold-Hurek B.	Transcriptional profiling of nitrogen fixation and the role of NifA in the diazotrophic endophyte Azoarcus sp. strain BH72.	PLoS ONE	9(2)	e86527	2014		
38394	24492469	Bakshi M., Oelm?ller R.	WRKY transcription factors: Jack of many trades in plants.	Plant Signal Behav	9(1)		2014		
38395	24531270	An C., Kuda T., Yazaki T., Takahashi H., Kimura B.	Caecal environment of rats fed far East Asian-modelled diets.	Appl. Microbiol. Biotechnol.	98(10)	4701-9	2014		
38396	24586434	Zhu L., Hu N., Yang M., Zhan X., Zhang Z.	Effects of different tillage and straw return on soil organic carbon in a rice-wheat rotation system.	PLoS ONE	9(2)	e88900	2014		
38397	24505334	Dj?nontin A., Pennetier C., Zogo B., Soukou K.B., Ole-Sangba M., Akogb?to M., Chandre F., Yadav R., Corbel V.	Field Efficacy of Vectobac GR as a Mosquito Larvicide for the Control of Anopheline and Culicine Mosquitoes in Natural Habitats in Benin, West Africa.	PLoS ONE	9(2)	e87934	2014		
38398	24409328	Zhang X., Li Y., Romeis J., Yin X., Wu K., Peng Y.	Use of a pollen-based diet to expose the ladybird beetle Propylea japonica to insecticidal proteins.	PLoS ONE	9(1)	e85395	2014		
38399	24414128	Hu Y., Mao B., Peng Y., Sun Y., Pan Y., Xia Y., Sheng X., Li Y., Tang L., Yuan L., Zhao B.	Deep re-sequencing of a widely used maintainer line of hybrid rice for discovery of DNA polymorphisms and evaluation of genetic diversity.	Mol. Genet. Genomics	289(3)	303-15	2014		
38400	24571491	Xie L., Tan Z., Zhou Y., Xu R., Feng L., Xing Y., Qi X.	Identification and fine mapping of quantitative trait loci for seed vigor in germination and seedling establishment in rice.	J Integr Plant Biol	56(8)	749-59	2014		
38401	24682459	Lu G., Wang X., Liu J., Yu K., Gao Y., Liu H., Wang C., Wang W., Wang G., Liu M., Mao G., Li B., Qin J., Xia M., Zhou J., Liu J., Jiang S., Mo H., Cui J., Nagasawa N., Sivasankar S., Albertsen M.C., Sakai H., Mazur B.J., Lassner M.W., Broglie R.M.	Application of T-DNA activation tagging to identify glutamate receptor-like genes that enhance drought tolerance in plants.	Plant Cell Rep.	33(4)	617-31	2014		
38402	24603905	Huo Y., Liu W., Zhang F., Chen X., Li L., Liu Q., Zhou Y., Wei T., Fang R., Wang X.	Transovarial transmission of a plant virus is mediated by vitellogenin of its insect vector.	PLoS Pathog.	10(3)	e1003949	2014		
38403	24523924	Wu W., Zheng L., Chen H., Jia D., Li F., Wei T.	Nonstructural protein NS4 of Rice Stripe Virus plays a critical role in viral spread in the body of vector insects.	PLoS ONE	9(2)	e88636	2014		
38404	24300846	Ronda S.R., Kethineni C., Parupudi L.C., Thunuguntla V.B., Vemula S., Settaluri V.S., Allu P.R., Grande S.K., Sharma S., Kandala C.V.	A growth inhibitory model with SO(x) influenced effective growth rate for estimation of algal biomass concentration under flue gas atmosphere.	Bioresour. Technol.	152	283-91	2014		
38405	24664256	Quinn C.R., Iriyama R., Fernando D.D.	Expression patterns of conserved microRNAs in the male gametophyte of loblolly pine (Pinus taeda).	Plant Reproduction	27(2)	69-78	2014		
38406	24442255	Bhattacharyya A., Saha J., Haldar S., Bhowmic A., Mukhopadhyay U.K., Mukherjee J.	Production of poly-3-(hydroxybutyrate-co-hydroxyvalerate) by Haloferax mediterranei using rice-based ethanol stillage with simultaneous recovery and re-use of medium salts.	Extremophiles	18(2)	463-70	2014		
38407	24518682	Yuan Y., Yu S., Yu J., Zhan Z., Li M., Liu G., Wang X., Huang L.	Predicting the function of 4-coumarate:CoA ligase (LJ4CL1) in Lonicera japonica.	Int J Mol Sci	15(2)	2386-99	2014		
38408	24243207	Liu G., Campbell B.C., Godwin I.D.	Sorghum genetic transformation by particle bombardment.	Methods Mol. Biol.	1099	219-34	2014		
38409	24548929	Zhao H., Yu H., Yuan X., Piao R., Li H., Wang X., Cui Z.	Degradation of lignocelluloses in rice straw by BMC-9, a composite microbial system.	J. Microbiol. Biotechnol.	24(5)	585-724	2014		
38410	24445591	Wu C.S., Kuo W.T., Chang C.Y., Kuo J.Y., Tsai Y.T., Yu S.M., Wu H.T., Chen P.W.	The modified rice alphaAmy8 promoter confers high-level foreign gene expression in a novel hypoxia-inducible expression system in transgenic rice seedlings.	Plant Mol. Biol.	85(1-2)	147-61	2014	AMY3E	Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 
38411	24568490	Summart R., Chewonarin T.	Purple rice extract supplemented diet reduces DMH- induced aberrant crypt foci in the rat colon by inhibition of bacterial beta-glucuronidase.	Asian Pac. J. Cancer Prev.	15(2)	749-55	2014		
38412	24398116	Chen J.S., Lin S.C., Chen C.Y., Hsieh Y.T., Pai P.H., Chen L.K., Lee S.	Development of a microarray for two rice subspecies: characterization and validation of gene expression in rice tissues.	BMC Res Notes	7	15	2014		
38413	24472286	Chen Y., Hao X., Cao J.	Small auxin upregulated RNA (SAUR) gene family in maize: identification, evolution, and its phylogenetic comparison with Arabidopsis, rice, and sorghum.	J Integr Plant Biol	56(2)	133-50	2014		
38414	24688294	Ding B., Wang J., Song N., Li M., Cheng Q., Huang G., Guo Y., Fu Y., Xie C., Sun Q., Xie X.	TaWRKY68 responses to biotic stresses are revealed by the orthologous genes from major cereals.	Genet. Mol. Biol.	37(1)	73-80	2014		
38415	24556552	Chen K., Shan Q., Gao C.	An efficient TALEN mutagenesis system in rice.	Methods	69(1)	2-8	2014		
38416	24405808	Hou C.Y., Wu M.T., Lu S.H., Hsing Y.I., Chen H.M.	Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data.	BMC Genomics	15	15	2014		
38417	24675748	Xue X.B., Zou L.F., Ma W.X., Liu Z.Y., Chen G.Y.	Identification of 17 HrpX-Regulated Proteins Including Two Novel Type III Effectors, XOC_3956 and XOC_1550, in Xanthomonas oryzae pv. oryzicola.	PLoS ONE	9(3)	e93205	2014		
38418	24588175	?lvarez-Barcia S., Flores J.R.	Hydrogen migration dynamics in hydrated Al clusters: the Al17(-)EH2O system as an example.	J Chem Phys	140(8)	084313	2014		
38419	24456316	Blankenship C.S., Tortella B.J., Bruno M.	BE EMPOWERED, a specialty pharmacy education program for hemophilia B patients, impacts adult joint bleeds and pediatric use of RICE.	J Manag Care Pharm	20(2)	151-8	2014		
38420	24433960	De Marco M., Peiretti P.G., Miraglia N., Bergero D.	Apparent digestibility of broken rice in horses using in vivo and in vitro methods.	Animal	8(2)	245-9	2014		
38421	24637831	Wang F., Li D., Wang Z., Dong A., Liu L., Wang B., Chen Q., Liu X.	Transcriptomic Analysis of the Rice White Tip Nematode, Aphelenchoides besseyi (Nematoda: Aphelenchoididae).	PLoS ONE	9(3)	e91591	2014		
38422	24586171	Cernadas R.A., Doyle E.L., Ni?o-Liu DO., Wilkins K.E., Bancroft T., Wang L., Schmidt C.L., Caldo R., Yang B., White F.F., Nettleton D., Wise R.P., Bogdanove A.J.	Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene.	PLoS Pathog.	10(2)	e1003972	2014		
38423	24499797	Li X., Han L., Zhao Y., You Z., Dong H., Zhang C.	Hpa1 harpin needs nitroxyl terminus to promote vegetative growth and leaf photosynthesis in Arabidopsis.	J. Biosci.	39(1)	127-37	2014		
38424	24484685	Rosa M.L., Falc?o PM., Yokoo E.M., da Cruz Filho RA., Alcoforado V.M., de Souza Bda S., Pinto F.N., Nery A.B.	Brazil's staple food and incident diabetes.	Nutrition	30(3)	365-8	2014		
38425	24643171	Claoston N., Samsuri A., Ahmad Husni M., Mohd Amran M.	Effects of pyrolysis temperature on the physicochemical properties of empty fruit bunch and rice husk biochars.	Waste Manag Res	32(4)	331-9	2014		
38426	24658143	Awan T.H., Chauhan B.S., Cruz P.C.	Influence of Environmental Factors on the Germination of Urena lobata L. and Its Response to Herbicides.	PLoS ONE	9(3)	e90305	2014		
38427	24632627	Bunterngsook B., Mhuantong W., Champreda V., Thamchaiphenet A., Eurwilaichitr L.	Identification of novel bacterial expansins and their synergistic actions on cellulose degradation.	Bioresour. Technol.	159C	64-71	2014		
38428	24420841	Chen Z., Dong F., Xu J., Liu X., Cheng Y., Liu N., Tao Y., Zheng Y.	Stereoselective determination of a novel chiral insecticide, sulfoxaflor, in brown rice, cucumber and apple by normal-phase high-performance liquid chromatography.	Chirality	26(2)	114-20	2014		
38429	24389666	Niehaus E.M., von Bargen KW., Espino J.J., Pfannm?ller A., Humpf H.U., Tudzynski B.	Characterization of the fusaric acid gene cluster in Fusarium fujikuroi.	Appl. Microbiol. Biotechnol.	98(4)	1749-62	2014		
38430	24680698	Li T., Liu B., Chen C.Y., Yang B.	TALEN utilization in rice genome modifications.	Methods	69(1)	9-16	2014		
38431	24521457	Zheng C.K., Wang C.L., Zhang X.P., Wang F.J., Qin T.F., Zhao K.J.	The last half-repeat of transcription activator-like effector (TALE) is dispensable and thereby TALE-based technology can be simplified.	Mol. Plant Pathol.	15(7)	690-7	2014		
38432	24370634	Limami A.M., Diab H., Lothier J.	Nitrogen metabolism in plants under low oxygen stress.	Planta	239(3)	531-41	2014		
38433	24358146	Zheng W., Ma L., Zhao J., Li Z., Sun F., Lu X.	Comparative transcriptome analysis of two rice varieties in response to rice stripe virus and small brown planthoppers during early interaction.	PLoS ONE	8(12)	e82126	2013		
38434	24302292	Luan W., Shen A., Jin Z., Song S., Li Z., Sha A.	Knockdown of OsHox33, a member of the class III homeodomain-leucine zipper gene family, accelerates leaf senescence in rice.	Sci China Life Sci	56(12)	1113-23	2013		
38435	24321450	Mo Y.J., Jeung J.U., Shin Y.S., Park C.S., Kang K.H., Kim B.K.	Agronomic and genetic analysis of Suweon 542, a rice floury mutant line suitable for dry milling.	Rice (N Y)	6	37	2013	FLO7,FLO4	Flo7, flo7(t), flo-7,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD
38436	24302673	Heap I.	Global perspective of herbicide-resistant weeds.	Pest Manag. Sci.	70(9)	1306-15	2013		
38437	24344809	Wang X., Wang Y., Pi?eros MA., Wang Z., Wang W., Li C., Wu Z., Kochian L.V., Wu P.	Phosphate transporters OsPHT1;9 and OsPHT1;10 are involved in phosphate uptake in rice.	Plant Cell Environ.	37(5)	1159-70	2014		
38438	24346765	Chen W.H., Chen Y.C., Lin J.G.	Study of chemical pretreatment and enzymatic saccharification for producing fermentable sugars from rice straw.	Bioprocess Biosyst Eng	37(7)	1337-44	2014		
38439	24295086	Poli Y., Basava R.K., Panigrahy M., Vinukonda V.P., Dokula N.R., Voleti S.R., Desiraju S., Neelamraju S.	Characterization of a Nagina22 rice mutant for heat tolerance and mapping of yield traits.	Rice (N Y)	6	36	2013		
38440	24390992	Li H., Ni D.H., Duan Y.B., Chen Y., Li J., Song F.S., Li L., Wei P.C., Yang J.B.	Quantitative detection of the rice false smut pathogen Ustilaginoidea virens by real-time PCR.	Genet. Mol. Res.	12(4)	6433-41	2013		
38441	24324772	Li L., Li D., Liu S., Ma X., Dietrich C.R., Hu H.C., Zhang G., Liu Z., Zheng J., Wang G., Schnable P.S.	The maize glossy13 gene, cloned via BSR-Seq and Seq-walking encodes a putative ABC transporter required for the normal accumulation of epicuticular waxes.	PLoS ONE	8(12)	e82333	2013		
38442	24355013	Gholizadeh A., Kermani M., Gholami M., Farzadkia M.	Kinetic and isotherm studies of adsorption and biosorption processes in the removal of phenolic compounds from aqueous solutions: comparative study.	J Environ Health Sci Eng	11(1)	29	2013		
38443	24337801	You J., Zong W., Du H., Hu H., Xiong L.	A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors.	Plant Mol. Biol.	84(6)	693-705	2014		
38444	24419631	Kosami K., Ohki I., Hayashi K., Tabata R., Usugi S., Kawasaki T., Fujiwara T., Nakagawa A., Shimamoto K., Kojima C.	Purification, crystallization and preliminary X-ray crystallographic analysis of a rice Rac/Rop GTPase, OsRac1.	Acta Crystallogr F Struct Biol Commun	70(Pt 1)	113-5	2014		
38445	24336929	Subudhi P.K., Singh P.K., DeLeon T., Parco A., Karan R., Biradar H., Cohn M.A., Sasaki T.	Mapping of Seed shattering Loci provides insights into origin of weedy rice and rice domestication.	J. Hered.	105(2)	276-87			
38446	24391039	Morais M.M., Turcatto A.P., Pereira R.A., Francoy T.M., Guidugli-Lazzarini KR., Gon?alves LS., de Almeida JM., Ellis J.D., De Jong D.	Protein levels and colony development of Africanized and European honey bees fed natural and artificial diets.	Genet. Mol. Res.	12(4)	6915-22	2013		
38447	24339403	Tandon S.	Degradation kinetics of anilofos in soil and residues in rice crop at harvest.	Pest Manag. Sci.			2013		
38448	24389954	Chen X., Itani T., Wu X., Chikawa Y., Irifune K.	Physiological factors affecting transcription of genes involved in the flavonoid biosynthetic pathway in different rice varieties.	Plant Signal Behav	8(12)	e27555	2013	_,LAR,ANS,RD,_	gh1, GH1, OsCHI, Cfi, CHI,OsLAR,ANS, OsANS1, ANS1, LDOX,Rd, DFR, OsDFR, OS-DFR,CHS, OsPKS06, OsPKS6, PKS06, PKS6
38449	24359672	Feng H., Xia X., Fan X., Xu G., Miller A.J.	Optimizing plant transporter expression in Xenopus oocytes.	Plant Methods	9(1)	48	2013		
38450	24304553	Colasuonno P., Maria M.A., Blanco A., Gadaleta A.	Description of durum wheat linkage map and comparative sequence analysis of wheat mapped DArT markers with rice and Brachypodium genomes.	BMC Genet.	14	114	2013		
38451	24400015	Impa S.M., Gramlich A., Tandy S., Schulin R., Frossard E., Johnson-Beebout SE.	Internal Zn allocation influences Zn deficiency tolerance and grain Zn loading in rice (Oryza sativa L.).	Front Plant Sci	4	534	2013		
38452	24341349	Wu Z., Zhang M., Wang L., Tu Y., Zhang J., Xie G., Zou W., Li F., Guo K., Li Q., Gao C., Peng L.	Biomass digestibility is predominantly affected by three factors of wall polymer features distinctive in wheat accessions and rice mutants.	Biotechnol Biofuels	6(1)	183	2013		
38453	24329970	Suriyaprabha R., Karunakaran G., Yuvakkumar R., Prabu P., Rajendran V., Kannan N.	Effect of silica nanoparticles on microbial biomass and silica availability in maize rhizosphere.	Biotechnol. Appl. Biochem.	61(6)	668-75	2014		
38454	24391861	Yang M., Zhang W., Dong H., Zhang Y., Lv K., Wang D., Lian X.	OsNRAMP3 is a vascular bundles-specific manganese transporter that is responsible for manganese distribution in rice.	PLoS ONE	8(12)	e83990	2013		
38455	24371175	Yadav S., Singh A., Singh M.R., Goel N., Vinod K.K., Mohapatra T., Singh A.K.	Assessment of genetic diversity in Indian rice germplasm (Oryza sativa L.): use of random versus trait-linked microsatellite markers.	J. Genet.	92(3)	545-57	2013		
38456	24697072	Liu T., Ye C.L., Chen X.Y., Ran W., Shen Q.R., Hu F., Li H.X.	[Effects of different organic manure sources and their combinations with chemical fertilization on soil nematode community structure in a paddy field of East China].	Ying Yong Sheng Tai Xue Bao	24(12)	3508-16	2013		
38457	24315532	Takahashi H., Wang S., Hayashi S., Wakasa Y., Takaiwa F.	Cis-element of the rice PDIL2-3 promoter is responsible for inducing the endoplasmic reticulum stress response.	J. Biosci. Bioeng.	117(5)	620-3	2014		
38458	24351075	Masuda H., Aung M.S., Nishizawa N.K.	Iron biofortification of rice using different transgenic approaches.	Rice (N Y)	6	40	2013		
38459	23999155	Lai D., Br?tz-Oesterhelt H., M?ller WE., Wray V., Proksch P.	Bioactive polyketides and alkaloids from Penicillium citrinum, a fungal endophyte isolated from Ocimum tenuiflorum.	Fitoterapia	91	100-6	2013		
38460	24358300	Zhang Q., Ding Y., Yao Y., Yu Y., Yang L., Cui H.	Creating rat model for hypoxic brain damage in neonates by oxygen deprivation.	PLoS ONE	8(12)	e83589	2013		
38461	24341871	Wei F.J., Droc G., Guiderdoni E., Hsing Y.I.	International Consortium of Rice Mutagenesis: resources and beyond.	Rice (N Y)	6	39	2013		
38462	24299927	Sakamoto T., Kitano H., Fujioka S.	An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice.	Plant Signal Behav	8	e27117	2013	BU1,_,_,_,DWARF4,JAMYB,BRD1,D2,D11,ELF1,CPD1,D61	ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3,,Dhr6, OsUBC5b, OsUBC16, UBC16,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsJAmyb, JAmyb, OsJAMyb ,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,OsCPD1, CYP90A3, CYP90A3/OsCPD1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
38463	23999673	Raj D., Lodha R., Pandey A., Mukherjee A., Agrawal A., Kabra S.K.	Aeroallergen sensitization in childhood asthmatics in northern India.	Indian Pediatr	50(12)	1113-8	2013		
38464	24571556	Gerhard D., Bremer M., Ritz C.	Estimating marginal properties of quantitative real-time PCR data using nonlinear mixed models.	Biometrics	70(1)	247-54	2014		
38465	24336345	Meng Y., Shao C., Wang H., Chen M.	Uncovering DCL1-dependent small RNA loci on plant genomes: a structure-based approach.	J. Exp. Bot.	65(2)	395-400	2014		
38466	24306693	Subburaj S., Chen G., Han C., Lv D., Li X., Zeller F.J., Hsam S.L., Yan Y.	Molecular characterisation and evolution of HMW glutenin subunit genes in Brachypodium distachyon L.	J. Appl. Genet.	55(1)	27-42	2014		
38467	24367635	Singh N., Choudhury D.R., Singh A.K., Kumar S., Srinivasan K., Tyagi R.K., Singh N.K., Singh R.	Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties.	PLoS ONE	8(12)	e84136	2013		
38468	24467897	Shi C.C., Feng C.C., Yang M.M., Li J.L., Li X.X., Zhao B.C., Huang Z.J., Ge R.C.	Overexpression of the receptor-like protein kinase genes AtRPK1 and OsRPK1 reduces the salt tolerance of Arabidopsis thaliana.	Plant Sci.	217-218	63-70	2014		
38469	24324328	Muhammad S.I., Maznah I., Mahmud R.B., Saeed M.I., Imam M.U., Ishaka A.	Estrogen receptor modulatory effects of germinated brown rice bioactives in the uterus of rats through the regulation of estrogen-induced genes.	Drug Des Devel Ther	7	1409-20	2013		
38470	24551824	Lee J.H., Choi K.H., Sohn E.H., Jang K.H.	Quality characteristics and ginsenosides composition of ginseng-yakju according to the particle size of ginseng powder.	Preventive Nutrition and Food Science	18(4)	234-41	2013		
38471	24237673	Panyakaew P., Boon N., Goel G., Yuangklang C., Schonewille J.T., Hendriks W.H., Fievez V.	Effect of supplementing coconut or krabok oil, rich in medium-chain fatty acids on ruminal fermentation, protozoa and archaeal population of bulls.	Animal	7(12)	1950-8	2013		
38472	24462668	Ratnayake S., Beahan C.T., Callahan D.L., Bacic A.	The reducing end sequence of wheat endosperm cell wall arabinoxylans.	Carbohydr. Res.	386	23-32	2014		
38473	24359557	Prawitwong P., Waeonukul R., Tachaapaikoon C., Pason P., Ratanakhanokchai K., Deng L., Sermsathanaswadi J., Septiningrum K., Mori Y., Kosugi A.	Direct glucose production from lignocellulose using Clostridium thermocellum cultures supplemented with a thermostable beta-glucosidase.	Biotechnol Biofuels	6(1)	184	2013		
38474	24315403	Teo Z.W., Song S., Wang Y.Q., Liu J., Yu H.	New insights into the regulation of inflorescence architecture.	Trends Plant Sci.	19(3)	158-65	2014		
38475	24377498	Jayatilake D.V., Tucker E.J., Bariana H., Kuchel H., Edwards J., McKay A.C., Chalmers K., Mather D.E.	Genetic mapping and marker development for resistance of wheat against the root lesion nematode Pratylenchus neglectus.	BMC Plant Biol.	13	230	2013		
38476	24360894	Lian X., Wang C., Zhang K., Li L.	The retrogradation properties of glutinous rice and buckwheat starches as observed with FT-IR, 13C NMR and DSC.	Int. J. Biol. Macromol.	64	288-93	2014		
38477	24433791	Rahman M.A., Rahman M.M., Reichman S.M., Lim R.P., Naidu R.	Heavy metals in Australian grown and imported rice and vegetables on sale in Australia: health hazard.	Ecotoxicol. Environ. Saf.	100	53-60	2014		
38478	24372448	Fan W., Lou H.Q., Gong Y.L., Liu M.Y., Wang Z.Q., Yang J.L., Zheng S.J.	Identification of early Al-responsive genes in rice bean (Vigna umbellata) roots provides new clues to molecular mechanisms of Al toxicity and tolerance.	Plant Cell Environ.	37(7)	1586-97	2013		
38479	24376835	Wu H., Qin J., Han J., Zhao X., Ouyang S., Liang Y., Zhang D., Wang Z., Wu Q., Xie J., Cui Y., Peng H., Sun Q., Liu Z.	Comparative high-resolution mapping of the wax inhibitors Iw1 and Iw2 in hexaploid wheat.	PLoS ONE	8(12)	e84691	2013		
38480	24341907	Minh-Thu PT., Hwang D.J., Jeon J.S., Nahm B.H., Kim Y.K.	Transcriptome analysis of leaf and root of rice seedling to acute dehydration.	Rice (N Y)	6	38	2013		
38481	24385353	Hong S.B., Lee M., Kim D.H., Chung S.H., Shin H.D., Samson R.A.	The proportion of non-aflatoxigenic strains of the Aspergillus flavus/oryzae complex from meju by analyses of the aflatoxin biosynthetic genes.	J. Microbiol.	51(6)	766-72	2013		
38482	24302714	Liu C.F., Wu C.X., Rafiq M.T., Aziz R., Hou D.D., Ding Z.L., Lin Z.W., Lou L.J., Feng Y.Y., Li T.Q., Yang X.E.	Accumulation of mercury in rice grain and cabbage grown on representative Chinese soils.	J Zhejiang Univ Sci B	14(12)	1144-51	2013		
38483	24370926	Dutta N., Mukhopadhyay A., Dasgupta A.K., Chakrabarti K.	Improved production of reducing sugars from rice husk and rice straw using bacterial cellulase and xylanase activated with hydroxyapatite nanoparticles.	Bioresour. Technol.	153	269-77	2014		
38484	24338426	An H.S., Park J.Y., Myeong J.I., An C.M.	Genetic relationships of Pacific abalone (Haliotidae) species determined using universal rice primer-polymerase chain reaction fingerprinting.	Genet. Mol. Res.	12(4)	6309-18	2013		
38485	24317430	Shafie N.H., Esa N.M., Ithnin H., Saad N., Pandurangan A.K.	Pro-apoptotic effect of rice bran inositol hexaphosphate (IP6) on HT-29 colorectal cancer cells.	Int J Mol Sci	14(12)	23545-58	2013		
38486	24366178	Heinz E., Kraft P., Buchen C., Frede H.G., Aquino E., Breuer L.	Set up of an automatic water quality sampling system in irrigation agriculture.	Sensors (Basel)	14(1)	212-28	2013		
38487	24377869	Tan C., Han Z., Yu H., Zhan W., Xie W., Chen X., Zhao H., Zhou F., Xing Y.	QTL scanning for rice yield using a whole genome SNP array.	J Genet Genomics	40(12)	629-38	2013		
38488	24370676	Sawadogo P.S., Namountougou M., To? KH., Rouamba J., Ma?ga H., Ou?draogo KR., Baldet T., Gouagna L.C., Kengne P., Simard F., Costantini C., Gibson G., Diabat? A., Lees R.S., Gilles J.R., Dabir? KR.	Swarming behaviour in natural populations of Anopheles gambiae and An. coluzzii: Review of 4 years survey in rural areas of sympatry, Burkina Faso (West Africa).	Acta Trop.	132 Suppl	S42-52	2014		
38489	24611390	Xu P., Gu X.H., Meng L.M., Qiu H., Wang H.F.	[Change of LAI and spectral response for rice under flood and waterlogging stress].	Guang Pu Xue Yu Guang Pu Fen Xi	33(12)	3298-302	2013		
38490	24400353	Cottrell R.G.	From RICE to PRICE.	Nursing	43(12)	8	2013		
38491	24371165	Mohammadi R., Mendioro M.S., Diaz G.Q., Gregorio G.B., Singh R.K.	Mapping quantitative trait loci associated with yield and yield components under reproductive stage salinity stress in rice (Oryza sativa L.).	J. Genet.	92(3)	433-43	2013		
38492	24228908	Cherdthong A., Wanapat M.	Rumen microbes and microbial protein synthesis in Thai native beef cattle fed with feed blocks supplemented with a urea-calcium sulphate mixture.	Arch Anim Nutr	67(6)	448-60	2013		
38493	24376554	Wang X., Hargrove M.S.	Nitric oxide in plants: the roles of ascorbate and hemoglobin.	PLoS ONE	8(12)	e82611	2013	Hb1,_	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR3, MDHAR1, OsMDHAR1
38494	24317058	Nakamura S., Nakano Y., Satoh H., Ohtsubo K.	Improved palatability and bio-functionality of super-hard rice by soaking in a barley-koji miso suspension.	Biosci. Biotechnol. Biochem.	77(12)	2419-29	2013		
38495	24467893	Sohn S.I., Kim Y.H., Kim S.L., Lee J.Y., Oh Y.J., Chung J.H., Lee K.R.	Genistein production in rice seed via transformation with soybean IFS genes.	Plant Sci.	217-218	27-35	2014		
38496	24338598	Clark A.L., Tayles N., Halcrow S.E.	Aspects of health in prehistoric mainland Southeast Asia: Indicators of stress in response to the intensification of rice agriculture.	Am. J. Phys. Anthropol.	153(3)	484-95	2014		
38497	24324764	Li C., Liu B., Li C., Zeng Q., Hao M., Han Z., Zhu J., Li X., Shen W.	Leaf morphology and ultrastructure responses to elevated O3 in transgenic Bt (cry1Ab/cry1Ac) rice and conventional rice under fully open-air field conditions.	PLoS ONE	8(12)	e82199	2013		
38498	24306352	Yang Y., Zhao J., Xing H., Wang J., Zhou K., Zhan G., Zhang H., Kang Z.	Different non-host resistance responses of two rice subspecies, japonica and indica, to Puccinia striiformis f. sp. tritici.	Plant Cell Rep.	33(3)	423-33	2014		
38499	24365393	Lin J., Kreisberg R., Kallio A., Dudley A.M., Nykter M., Shmulevich I., May P., Autio R.	POMO--Plotting Omics analysis results for Multiple Organisms.	BMC Genomics	14	918	2013		
38500	24378555	Zhang S., Xu R., Gao Z., Chen C., Jiang Z., Shu H.	A genome-wide analysis of the expansin genes in Malus X Domestica.	Mol. Genet. Genomics	289(2)	225-36	2014		
38501	24335666	Chu S.C., Hsieh Y.S., Hsu L.S., Chen K.S., Chiang C.C., Chen P.N.	Rubus idaeus L Inhibits Invasion Potential of Human A549 Lung Cancer Cells by Suppression Epithelial-to-Mesenchymal Transition and Akt Pathway In Vitro and Reduces Tumor Growth In Vivo.	Integr Cancer Ther	13(3)	259-273	2013		
38502	24484953	Lee H.W., Park J.H., Park M.Y., Kim J.	GIP1 may act as a coactivator that enhances transcriptional activity of LBD18 in Arabidopsis.	J. Plant Physiol.	171(5)	14-8	2014		
38503	24322445	Zhang S., Lian Y., Liu Y., Wang X., Liu Y., Wang G.	Characterization of a maize Wip1 promoter in transgenic plants.	Int J Mol Sci	14(12)	23872-92	2013		
38504	24355316	Yadavalli R., Heggers G.R.	Two stage treatment of dairy effluent using immobilized Chlorella pyrenoidosa.	J Environ Health Sci Eng	11(1)	36	2013		
38505	24313332	Byeon Y., Back K.	Melatonin synthesis in rice seedlings in vivo is enhanced at high temperatures and under dark conditions due to increased serotonin N-acetyltransferase and N-acetylserotonin methyltransferase activities.	J. Pineal Res.	56	189 195	2013		
38506	24388655	Janagama H.K., Tounkang S., Cirillo S.L., Zinniel D.K., Barletta R.G., Cirillo J.D.	Molecular analysis of the Mycobacterium tuberculosis lux-like mel2 operon.	Tuberculosis (Edinb)	93 Suppl	S83-7	2013		
38507	24391003	Zhou S.J., Jing Z., Shi J.L.	Genome-wide identification, characterization, and expression analysis of the MLO gene family in Cucumis sativus.	Genet. Mol. Res.	12(4)	6565-78	2013		
38508	24669714	Ruan H., Rong W., Ma Y., Ji W., LIU H., Song N.	[Determination of 34 pesticide residues in rice, proso millet and wheat with QuEChERS-on line gel permeation chromatography-gas chromatography-mass spectrometry].	Se Pu	31(12)	1211-7	2013		
38509	24317047	Hamamoto Y., Tsukiyama T., Yoshikake Y., Teraishi M., Okumoto Y., Tanisaka T.	Transient dual-luciferase assay combined with a glucocorticoid-inducible system for rice protoplasts.	Biosci. Biotechnol. Biochem.	77(12)	2480-2	2013		
38510	24402821	Gopal J.V., Kannabiran K.	Studies on interaction of insect repellent compounds with odorant binding receptor proteins by in silico molecular docking approach.	Interdiscip Sci	5(4)	280-5	2013		
38511	24371307	Osakabe K., Nishizawa-Yokoi A., Ohtsuki N., Osakabe Y., Toki S.	A Mutated Cytosine Deaminase Gene, codA (D314A), as an Efficient Negative Selection Marker for Gene Targeting in Rice.	Plant Cell Physiol.	55(3)	658-65	2014		
38512	24341723	Chen C., Lian B., Hu J., Zhai H., Wang X., Venu R.C., Liu E., Wang Z., Chen M., Wang B., Wang G.L., Wang Z., Mitchell T.K.	Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors.	BMC Genomics	14	887	2013		
38513	24454511	Giovanni S., Silvia B., Eugenio R., Stefania F., Romina V., Annunziata L.	Mediterranean Diet and Red Yeast Rice Supplementation for the Management of Hyperlipidemia in Statin-Intolerant Patients with or without Type 2 Diabetes.	Evid Based Complement Alternat Med	2013	743473	2013		
38514	24334350	Obayashi T., Okamura Y., Ito S., Tadaka S., Aoki Y., Shirota M., Kinoshita K.	ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.	Plant Cell Physiol.	55(1)	e6	2014		
38515	24312561	Liu W., Xu J., Wu S., Liu Y., Yu X., Chen J., Tang X., Wang Z., Zhu X., Li X.	Selective anti-proliferation of HER2-positive breast cancer cells by anthocyanins identified by high-throughput screening.	PLoS ONE	8(12)	e81586	2013		
38516	0	Lima M.G.S.a, Lopes N.F.a, Zimmer P.D.b, Meneghello G.E.b, Ferrari C.b, Mendes C.R.a	Detection of genes providing salinity-tolerance in rice [Detec??o de genes que conferem toler?ncia ? salinidade em planta de arroz]	Acta Scientiarum - Biological Sciences	36	79-85	2014		
38517	0	Williams K.a b, Sorrells M.E.a	Three-dimensional seed size and shape QTL in hexaploid wheat (Triticum aestivum L.) populations	Crop Sci.	54	98-110	2014		
38518	0	Zhang Y.a, Li J.a, Zhou J.W.a, Xu P.a, Deng X.N.a, Yang F.a b, Deng W.a, Hu F.Y.a, Tao D.Y.a	seed length controlled by same locus in four different AA genome species of genus oryza	Rice Science	21	20-28	2014		
38519	0	Zhang Z.a, Hao J.a, Yuan J.a, Song Q.b, Hyten D.L.b, Cregan P.B.b, Zhang G.c, Gu C.a, Li M.d, Wang D.a	Phytophthora root rot resistance in soybean E00003	Crop Sci.	54	492-499	2014		
38520	0	Nakano H.a b, Hattori I.c, Morita S.a	Yield and nutritive value response to row spacing and cultivar in forage rice	Grassland Science	60	55-62	2014		
38522	0	Chen C.a b, Wu W.a, Sun X.a, Li B.a, Hu G.a c, Zhang Q.a d, Li J.a, Zhang H.a, Li Z.a	Fine-mapping and candidate gene analysis of BLACK hull1 in rice (Oryza sativa L.)	Plant OMICS	7	12-18	2014	BHC	Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1
38523	0	Ujiie K., Ishimaru K.	Alleles affecting 30 traits for productivity in two japonica rice varieties, koshihikari and nipponbare (oryza sativa l.)	Plant Prod. Sci.	17	47-65	2014		
38524	0	Habib N.a, Ashraf M.b c	Effect of exogenously applied nitric oxide on water relations and ionic composition of rice (Oryza Sativa L.) plants under salt stress	Pak J Bot	46	111-116	2014		
38526	24350905	Tamiru M.a, Abe A.a b, Utsushi H.a, Yoshida K.a, Takagi H.a c, Fujisaki K.a, Undan J.R.a c, Rakshit S.a, Takaichi S.d, Jikumaru Y.e, Yokota T.e, Terry M.J.a f, Terauchi R.a	The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency	New Phytologist	202	116-131	2014	IM1,_	OsIM1, OsIM1a, OsIM2, OsIM, PTOX1,
38528	24562500	Wang Y.a, Jiang X.a, Li K.a, Wu M.a b, Zhang R.a, Zhang L.a, Chen G.a	Photosynthetic responses of Oryza sativa L. seedlings to cadmium stress: Physiological, biochemical and ultrastructural analyses	Biometals	27	389-401	2014	YGL1,_,YGL10,CAB1R,_	OsYGL1, CHLG, Ygl1, CS, OsCHLG,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,ALAD, HEMB
38529	0	Gao P.P.a, Zheng G.H.a, Wu Y.H.b, Liu P.a	Effect of exogenous potassium on photosynthesis and antioxidant enzymes of rice under iron toxicity	Russian Journal of Plant Physiology	61	47-52	2014		
38530	0	Ravisankar N., Gangwar B., Prasad K.	Influence of balanced fertilization on productivity and nutrient use efficiency of cereal based cropping systems	Indian Journal of Agricultural Sciences	84	248-254	2014		
38531	0	Chandran A.K.N.a, Jung K.H.a b	Resources for systems biology in rice	Journal of Plant Biology	57	80-92	2014		
38532	0	Mohammed A.R., Tarpley L.	Differential response of two important Southern US rice (Oryza sativa L.) cultivars to high night temperature	Aust J Crop Sci	8	191-199	2014		
38533	23512472	Dai L.a, Dai W.a, Song X.a, Lu B.b, Qiang S.a	A comparative study of competitiveness between different genotypes of weedy rice (Oryza sativa) and cultivated rice	Pest Manag. Sci.	70	113-122	2014		
38534	24405887	Kim Y.H.a, Khan A.L.b, Kim D.H.a, Lee S.Y.a, Kim K.M.a, Waqas M.a, Jung H.Y.a, Shin J.H.a, Kim J.G.c, Lee I.J.a	Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones	BMC Plant Biol.	14	13	2014		
38535	0	Nath K.a b, Kumar S.c, Poudyal R.S.b, Yang Y.N.b, Timilsina R.a, Park Y.S.d, Nath J.b, Chauhan P.S.c, Pant B.e, Lee C.H.b	Developmental stage-dependent differential gene expression of Superoxide dismutase isoenzymes and their localization and physical interaction network in rice (Oryza sativa L.)	Genes and Genomics	36	45-55	2014		
38536	0	Fu Y.Q., Yang X.J., Shen H.	The physiological mechanism of enhanced oxidizing capacity of rice (Oryza sativa L.) roots induced by phosphorus deficiency	Acta Physiologiae Plantarum	36	179-190	2014		
38537	24390391	Weng X., Wang L., Wang J., Hu Y., Du H., Xu C., Xing Y., Li X., Xiao J., Zhang Q.	Grain Number, plant height, and Heading Date7 is a central regulator of growth, development, and stress response	Plant Physiol.	164	735-747	2014		
38538	0	Shu C., Sun S., Chen J., Chen J., Zhou E.	Comparison of different methods for total RNA extraction from sclerotia of Rhizoctonia solani	Electronic Journal of Biotechnology	17	50 54	2014		
38540	0	Ul Haq T.a d, Akhtar J.b, Steele K.A.c, Munns R.d e, Gorham J.c	Reliability of ion accumulation and growth components for selecting salt tolerant lines in large populations of rice	Functional Plant Biology	41	379-390	2014		
38543	0	Frouin J.a, Filloux D.b, Taillebois J.a, Grenier C.a, Montes F.a, de Lamotte F.c, Verdeil J.L.a, Courtois B.a, Ahmadi N.a	Positional cloning of the rice male sterility gene ms-IR36, widely used in the inter-crossing phase of recurrent selection schemes	Molecular Breeding	33	555-567	2014		
38544	0	Sharma S.K.a, Singh J.a, Chauhan M.S.a, Krishnamurthy S.L.a b	Multivariate analysis of phenotypic diversity of rice (Oryza sativa) germplasm in North-West India	Indian Journal of Agricultural Sciences	84	295-299	2014		
38545	0	Sahoo B.C.a, Panda S.N.b	Simulation modeling for sizing lined on-farm pond for various crop substitution ratios in rainfed uplands of eastern india	Acta Hortic.	1015	295-306	2014		
38546	24431339	Takahashi H.a, Greenway H.b, Matsumura H.c, Tsutsumi N.d, Nakazono M.a	Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water	Ann. Bot.	113	851-859	2014		
38547	0	Wu H.a, Liu Y.a, He J.a, Liu Y.a, Jiang L.a, Liu L.a, Wang C.a, Cheng X.a, Wan J.a b	Fine mapping of brown planthopper (Nilaparvata lugens St?l) resistance gene Bph28(t) in rice (Oryza sativa L.)	Molecular Breeding	33	909-918	2014	BPH28	Bph28, Bph28(t)
38548	24659905	Xu Q., Saito H., Hirose I., Katsura K., Yoshitake Y., Yokoo T., Tsukiyama T., Teraishi M., Tanisaka T., Okumoto Y.	The effects of the photoperiod-insensitive alleles, se13, hd1 and ghd7, on yield components in rice	Molecular Breeding	33	813-819	2014	GHD7,SE13,SE1,EF1	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Se13, OsHY2, OsGUN3, GUN3, PS13,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
38549	0	P?l M.a, Kov?cs V.a, Szalai G.a, So?s V.a, Ma X.b, Liu H.b, Mei H.b, Janda T.a	Salicylic Acid and Abiotic Stress Responses in Rice	Journal of Agronomy and Crop Science	200	1-11	2014		
38550	0	Sheng L., Deng L., Yan H., Zhao Y., Dong Q., Li Q., Li X., Cheng B., Jiang H.	A genome-wide analysis of the AAAP gene family in maize	Journal of Proteomics and Bioinformatics	7	023-033	2014		
38551	24603605	Oszvald M.a b, Tamas L.a, Shewry P.R.b c, Tosi P.b c	The trafficking pathway of a wheat storage protein in transgenic rice endosperm	Ann. Bot.	113	807-815	2014		
38552	0	Longu? D.R.S.a, Galzi-Pinel A.b, Semballa S.a, Zinga I.a, Fargette D.b, Traor? O.c	First report of Rice yellow mottle virus in rice in the Central African Republic	Plant Dis.	98	162	2014		
38553	0	Hou C.X., Zhan Y.H., Jiang D.A., Weng X.Y.	Functional characterization of a new pathogen induced xylanase inhibitor (RIXI) from rice	European Journal of Plant Pathology	138	405-414	2014	CHT3,RIXI ,PR1B	Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11,C10701,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
38554	23996324	Pandey P., Srivastava R.K., Dubey R.S.	Water deficit and aluminum tolerance are associated with a high antioxidative enzyme capacity in Indica rice seedlings	Protoplasma	251	147-160	2014		
38556	24400898	Plackett A.R.G.a, Ferguson A.C.b, Powers S.J.c, Wanchoo-Kohli A.a, Phillips A.L.a, Wilson Z.A.b, Hedden P.a, Thomas S.G.a	DELLA activity is required for successful pollen development in the Columbia ecotype of Arabidopsis	New Phytologist	201	825-836	2014		
38557	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White III L.M., Linscombe S.D.	Registration of 'CL152' rice	Journal of Plant Registrations	8	9-12	2014		
38558	24331414	Maejima E.a, Watanabe T.a, Osaki M.a, Wagatsuma T.b	Phosphorus deficiency enhances aluminum tolerance of rice (Oryza sativa) by changing the physicochemical characteristics of root plasma membranes and cell walls	J. Plant Physiol.	171	9-15	2014		
38559	24368504	Shi J., Hu H., Zhang K., Zhang W., Yu Y., Wu Z., WU P.	The paralogous SPX3 and SPX5 genes redundantly modulate Pi homeostasis in rice	J. Exp. Bot.	65	859-870	2014	_,IPS1,miR827,_,_,PHR2,PT2,_,LTN1	OsSPX6, SPX6,OsIPS1, IPS1,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsSPX3, SPX3,OsSQD2, SQD2, SQD2.2, OsSQD2.2,OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsSPX5, SPX5,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35
38560	24467890	Qian Q., Huang L., Yi R., Wang S., Ding Y.	Enhanced resistance to blast fungus in rice (Oryza sativa L.) by expressing the ribosome-inactivating protein alpha-momorcharin	Plant Science	217-218	1-7	2014		
38561	0	Wang Y.a b, Zhang Q.a b, Zheng T.a, Cui Y.a, Zhang W.b, Xu J.a, Li Z.a	Drought-tolerance QTLs commonly detected in two sets of reciprocal introgression lines in rice	Crop and Pasture Science	65	171-184	2014		
38562	0	Fukuda A.a, Kataoka T.b, Shiratsuchi H.c, Fukushima A.c, Yamaguchi H.d, Mochida H.c, Ogiwara H.d	QTLs for seedling growth of direct seeded rice under submerged and low temperature conditions	Plant Prod. Sci.	17	41-46	2014		
38563	0	Gnyp M.L.a b, Miao Y.a, Yuan F.c, Ustin S.L.d, Yu K.a b, Yao Y.a, Huang S.a b, Bareth G.b	Hyperspectral canopy sensing of paddy rice aboveground biomass at different growth stages	Field Crops Res.	155	42-55	2014		
38564	0	Wei X.a b, Qiao W.a, Yuan N.a, Chen Y.a, Wang R.a, Cao L.a, Zhang W.a, Yang Q.a, Zeng H.b	Domestication and association analysis of Hd1 in Chinese mini-core collections of rice	Genet. Resour. Crop Evol.	61	121-142	2014		
38565	0	Rafii M.Y.a b, Zakiah M.Z.b, Asfaliza R.c, Haifaa I.b, Latif M.A.b, Malek M.A.a	Grain quality performance and heritability estimation in selected F1 rice genotypes	Sains Malays	43	1-7	2014		
38566	24482599	Oliva N.a, Chadha-Mohanty P.a, Poletti S.a, Abrigo E.a, Atienza G.a, Torrizo L.a, Garcia R.a, Due?as Jr. C.a, Poncio M.A.a, Balindong J.a, Manzanilla M.a, Montecillo F.a, Zaidem M.d, Barry G.a, Herv? P.c, Shou H.b, Slamet-Loedin I.H.a	Large-scale production and evaluation of marker-free indica rice IR64 expressing phytoferritin genes	Molecular Breeding	33	23-37	2014		
38567	24486490	Bae H., Kim W.T.	Classification and interaction modes of 40 rice E2 ubiquitin-conjugating enzymes with 17 rice ARM-U-box E3 ubiquitin ligases	Biochem. Biophys. Res. Commun.	444	575-580	2014		
38568	0	Dallagnol L.J.a, Rodrigues F.A.b, Mielli M.V.B.b, Ma J.F.c	Rice grain resistance to brown spot and yield are increased by silicon	Trop Plant Pathol	39	56-63	2014		
38569	0	Sailaja B., Voleti S.R., Subrahmanyam D., Sarla N., Prasanth V.V., Bhadana V.P., Mangrauthia S.K.	Prediction and expression analysis of miRNAs associated with heat stress in oryza sativa	Rice Science	21	3-12	2014		
38570	0	Cho S.H.a, Yoo S.C.a, Zhang H.a, Lim J.H.a, Paek N.C.a b	Rice NARROW LEAF1 Regulates Leaf and Adventitious Root Development	Plant Molecular Biology Reporter	32	270-281	2014		
38571	24474809	Kim H.a, Lee K.a, Hwang H.a, Bhatnagar N.b c, Kim D.Y.a, Yoon I.S.a, Byun M.O.a, Kim S.T.d, Jung K.H.b c, Kim B.G.a	Overexpression of PYL5 in rice enhances drought tolerance, inhibits growth, and modulates gene expression	J. Exp. Bot.	65	453-464	2014	_	OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11
38572	0	Qiao X., He Y., Wang Z., Li X., Zhang K., Zeng H.	Effect of foliar spray of zinc on chloroplast beta-carbonic anhydrase expression and enzyme activity in rice (Oryza sativa L.) leaves	Acta Physiologiae Plantarum	36	263-272	2014		
38574	24491154	Dixit S., Singh A., Sta Cruz M.T., Maturan P.T., Amante M., Kumar A.	Multiple major QTL lead to stable yield performance of rice cultivars across varying drought intensities	BMC Genet.	15	16	2014		
38575	0	Wu Z.H.a, Yang C.W.b, Yang M.Y.a c	Photosynthesis, photosystem II efficiency, amino acid metabolism and ion distribution in rice (Oryza sativa L.) in response to alkaline stress	Photosynthetica	52	157-160	2014		
38576	0	Zhao F., Zhang Y., Wu Y., Wang T., Ma L., Yang Z., Wei X., Sang X., Ling Y., Wang N., Zhang C., He G.	Morphological and physiological analysis of narrow and striped leaf 1 (nsl1) mutant of rice (Oryza sativa L.) and the gene mapping	Chinese Science Bulletin	59	840-848	2014		
38577	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White L.M., Linscombe S.D.	Registration of 'CL111' rice	Journal of Plant Registrations	8	5-8	2014		
38578	0	Eizenga G.C.a, Ali M.L.b e, Bryant R.J.a, Yeater K.M.c, McClung A.M.a, McCouch S.R.d	Registration of the Rice Diversity Panel 1 for genomewide association studies	Journal of Plant Registrations	8	109-116	2014		
38579	24498428	Zhang J.a b, Liu X.a, Li S.a, Cheng Z.a, Li C.a	The rice semi-dwarf mutant SD37, caused by a mutation in CYP96B4, plays an important role in the fine-tuning of plant growth	PLoS ONE	9		2014	CYCB1;1,_,_,MCM3,CYCD2;1,ORC1,SD37,EXPB3,_	CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm,CDC3,OsRPA32, RPA32, RPA2A ,OsMCM3,CycD2;1, CYCD2-1, Orysa;CycD2;1, Orysa;CYCD2;1, Orysa;CycD2;2,OsORC1,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1,OsEXPB3, osaEXPb1.10, EXPb1.10,CDC2
38580	0	Zhao B.a b c, Zhang J.a b c, Dai X.a, Peng L.a, Peng H.a, Huang W.a	Effects of Pomacea canaliculata on aquatic macrophyte community in paddy fields	Shengtai Xuebao/ Acta Ecologica Sinica	34	907-915	2014		
38581	0	Lundy M.E.a, Hill J.E.a, van Kessel C.a, Owen D.A.a, Pedroso R.M.a, Boddy L.G.b, Fischer A.J.a, Linquist B.A.a	Site-specific, real-time temperatures improve the accuracy of weed emergence predictions in direct-seeded rice systems	Agric Syst	123	12-21	2014		
38582	24383761	Chiara B.a b, Daniela C.a, Rosaria P.a, Alberto G.b, Paolo B.b, Simona U.b, Gabriele O.a, Francesca D.b, Elisabetta L.c, Luigi C.a, Giampiero V.a b	Improvement of marker-based predictability of apparent amylose content in japonica rice through GBSSI allele mining	Rice (N Y)	7	1	2014		
38583	0	Cui S.Y.a b, Xue J.F.c, Chen F.c, Tang W.G.d, Zhang H.L.c, Lal R.e	Tillage effects on nitrogen leaching and nitrous oxide emission from double-cropped paddy fields	Agron J	106	15-23	2014		
38584	24323250	Azevedo C.C.a, Azevedo J.a b, Os?rio H.c d, Vasconcelos V.a e, Campos A.a	Early physiological and biochemical responses of rice seedlings to low concentration of microcystin-LR	Ecotoxicology	23	107-121	2014		
38585	24511289	Lian G.a, Ding Z.a b c, Wang Q.b, Zhang D.a, Xu J.a	Origins and evolution of WUSCHEL-related homeobox protein family in plant kingdom	The Scientific World Journal	2014	534140	2014		
38586	0	Sunder S., Singh R., Dodan D.S.	Management of bakanae disease of rice caused by Fusarium moniliforme	Indian Journal of Agricultural Sciences	84	224-228	2014		
38587	24656333	Corr?a A.a b, Cruz C.b, P?rez-Tienda J.a, Ferrol N.a	Shedding light onto nutrient responses of arbuscular mycorrhizal plants: Nutrient interactions may lead to unpredicted outcomes of the symbiosis	Plant Science	221-222	29-41	2014		
38588	0	Muthukumaran M., Vijaya Bhaskara Rao A.	Toxic effects of aluminum on certain protein metabolic parameters in two rice varieties during leaf senescence	Research Journal of Pharmaceutical, Biological and Chemical Sciences	5	598-604	2014		
38590	24566471	Chen X.a b, Lin S.a c, Liu Q.a, Huang J.a, Zhang W.a, Lin J.a, Wang Y.a, Ke Y.a, He H.a	Expression and interaction of small heat shock proteins (sHsps) in rice in response to heat stress	Biochimica et Biophysica Acta - Proteins and Proteomics	1844	818-828	2014		
38591	24316011	Ren C.G.a, Li X.a, Liu X.L.a c, Wei X.D.a, Dai C.C.b	Hydrogen peroxide regulated photosynthesis in C4-PEPC transgenic rice	Plant Physiology and Biochemistry	74	218-229	2014		
38592	24335508	Li Y.a, Lu Y.G.a, Shi Y.a, Wu L.b, Xu Y.J.a, Huang F.a, Guo X.Y.d, Zhang Y.a, Fan J.a, Zhao J.Q.a, Zhang H.Y.a, Xu P.Z.a, Zhou J.M.c, Wu X.J.a, Wang P.R.a, Wang W.M.a	Multiple rice MicroRNAs are involved in immunity against the blast fungus Magnaporthe oryzae	Plant Physiol.	164	1077-1092	2014		
38593	24309107	Fang H.a b, Liu X.c, Thorn G.a, Duan J.d, Tian L.a b	Expression analysis of histone acetyltransferases in rice under drought stress	Biochem. Biophys. Res. Commun.	443	400-405	2014	HAC703,HAF701,HAG703,HAM701	OsHAC703, OsKIX_2, OsHAC1,OsHAF701,OsHAG703,OsHAM701, OsMOF, MOF
38595	0	Sartori G.M.S., Marchesan E., Azevedo C.F., Coelho L.L., de Oliveira M.L.	Germination of irrigated rice and red rice biotypes under different temperatures [Germina??o de arroz irrigado e de bi?tipos de arroz-vermelho submetidas a diferentes temperaturas]	Revista Ciencia Agronomica	45	319-326	2014		
38596	0	Yang J.W.a b, Fu J.X.a, Li J.a, Cheng X.L.a b, Li F.a, Dong J.F.a, Liu Z.L.a, Zhuang C.X.a	A Novel Co-immunoprecipitation Protocol Based on Protoplast Transient Gene Expression for Studying protein-protein Interactions in Rice	Plant Molecular Biology Reporter	32	153-161	2014		
38597	0	Kumar R.a, Pandey D.S.a b, Singh V.P.a b	Wheat (Triticum aestivum) productivity under different tillage practices and legume options in rice (Oryza sativa) and wheat cropping sequence	Indian Journal of Agricultural Sciences	84	101-106	2014		
38598	0	Yasmin S., Mensuali-Sodi A., Perata P., Pucciariello C.	Ethylene influences in vitro regeneration frequency in the FR13A rice harbouring the SUB1A gene	Plant Growth Regul.	72	97-103	2014		
38599	0	Awan M.I.a b, Bastiaans L.a, van Oort P.a, Ahmad R.c, Ashraf M.Y.c, Meinke H.a d	Nitrogen use and crop performance of rice under aerobic conditions in a semiarid subtropical environment	Agron J	106	199-211	2014		
38602	0	Khare T.R.a, Sharma R.a b, Singh S.B.a	Evaluation of the performance of penoxsulam for weed management in directseeded and transplanted rice (Oryza sativa)	Indian Journal of Agricultural Sciences	84	154-157	2014		
38604	0	Fageria N.K.a, Carvalho M.C.S.a, dos Santos F.C.b	ROOT GROWTH OF UPLAND RICE GENOTYPES AS INFLUENCED BY NITROGEN FERTILIZATION	J Plant Nutr	37	95-106	2014		
38605	0	Xu J.Z.a b, Yu Y.M.b, Peng S.Z.a, Yang S.H.a, Liao L.X.b	A modified nonrectangular hyperbola equation for photosynthetic light-response curves of leaves with different nitrogen status	Photosynthetica	52	117-123	2014		
38606	0	Htwe N.N.a, Ling H.C.c, Zaman F.Q.d, Maziah M.a b	Plant genetic transformation efficiency of selected Malaysian rice based on selectable marker gene (hptII)	Pakistan Journal of Biological Sciences	17	472-481	2014		
38607	24393121	Sui Y.a b, Li B.a, Shi J.a, Chen M.a	Genomic, regulatory and epigenetic mechanisms underlying duplicated gene evolution in the natural allotetraploid Oryza minuta	BMC Genomics	15	11	2014		
38608	0	Jiang Y.a, Pan S.b, Cai M.a, Li C.a, Zhan M.a, Wang J.a, Mohamed I.a c, Cao C.a	Assessment of yield advantages of Bt-MH63 with cry1C* or cry2A* genes over MH63 (Oryza sativa L.) under different pest control modes	Field Crops Res.	155	153-158	2014		
38609	24485312	Gashaw A.a, Theerawitaya C.b, Samphumphuang T.b, Cha-um S.b, Supaibulwatana K.a	CPPU elevates photosynthetic abilities, growth performances and yield traits in salt stressed rice (Oryza sativa L. spp. indica) via free proline and sugar accumulation	Pestic Biochem Physiol	108	27-33	2014		
38610	0	Song Z.a b c, Wang H.a b, Strong P.J.d, Guo F.a	Phytolith carbon sequestration in China's croplands	European Journal of Agronomy	53	10-15	2014		
38611	0	Hao Z.a, Wang L.a, Li C.b, Huang F.b, Tao R.a	Comparison between the resistance to blast in panicles exserted from the main culm and primary tillers as measured in six rice varieties	European Journal of Plant Pathology	138	9-14	2014		
38612	0	Glaubitz U.a, Li X.a, K?hl K.I.a, Van Dongen J.T.a b, Hincha D.K.a, Zuther E.a	Differential physiological responses of different rice (Oryza sativa) cultivars to elevated night temperature during vegetative growth	Functional Plant Biology	41	437-448	2014		
38613	24601753	Kumar S.P., Pandya H.A., Jasrai Y.T.	A computational model for non-conserved mature miRNAs from the rice genome	SAR QSAR Environ Res	25	205-220	2014		
38614	0	Wu C., Mo J., Xue S., Luo C.	Characteristics of arsenic (As) tolerance and accumulation in rice (Oryza sativa L.) genotypes with different radial oxygen loss	Shengtai Xuebao/ Acta Ecologica Sinica	34	807-813	2014		
38615	0	Xie H.a b, Wang J.a, Qian M.a, Li N.a, Zhu Y.a, Li S.a	Mitotype-specific sequences related to cytoplasmic male sterility in Oryza species	Molecular Breeding	33	803-811	2014		
38616	0	Jagadish K.S.V.a b, Craufurd P.b c, Shi W.a d, Oane R.a	A phenotypic marker for quantifying heat stress impact during microsporogenesis in rice (Oryza sativa L.)	Functional Plant Biology	41	48-55	2014		
38618	0	Li G.a b, Zhang J.b, Yang C.b c, Song Y.b, Zheng C.d, Liu Z.b, Wang S.a b, Tang S.a, Ding Y.a	YIELD AND YIELD COMPONENTS OF HYBRID RICE AS INFLUENCED BY NITROGEN FERTILIZATION AT DIFFERENT ECO-SITES	J Plant Nutr	37	244-258	2014		
38619	24335509	Matsushima R.a, Maekawa M.a, Kusano M.b, Kondo H.a, Fujita N.c, Kawagoe Y.d, Sakamoto W.a	Amyloplast-localized SUBSTANDARD STARCH GRAIN4 protein influences the size of starch grains in rice endosperm	Plant Physiol.	164	623-636	2014	SSG4	
38621	24655385	Bhoomika K., Pyngrope S., Dubey R.S.	Effect of aluminum on protein oxidation, non-protein thiols and protease activity in seedlings of rice cultivars differing in aluminum tolerance	J. Plant Physiol.	171	497-508	2014		
38622	0	Dufey I., Gheysens S., Ingabire A., Lutts S., Bertin P.	Silicon Application in Cultivated Rices (Oryza sativa L and Oryza glaberrima Steud) Alleviates Iron Toxicity Symptoms Through the Reduction in Iron Concentration in the Leaf Tissue	Journal of Agronomy and Crop Science	200	132-142	2014		
38623	0	Chauhan B.S.a, Abeysekera A.S.K.b, Wickramarathe M.S.b, Kulatunga S.D.b, Wickrama U.B.b	Effect of rice establishment methods on weedy rice (Oryza sativa L.) infestation and grain yield of cultivated rice (O. sativa L.) in Sri Lanka	Crop Protection	55	42-49	2014		
38624	24579076	Hakim M.A.a b, Juraimi A.S.c, Hanafi M.M.a, Ismail M.R.c d, Selamat A.c, Rafii M.Y.c d, Latif M.A.c e	Biochemical and anatomical changes and yield reduction in rice (Oryza sativa L.) under varied salinity regimes	Biomed Res Int	2014	208584	2014		
38625	24412201	Wang Z.Q.a, Xu X.Y.a, Gong Q.Q.a, Xie C.b, Fan W.a, Yang J.L.a, Lin Q.S.c, Zheng S.J.a	Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants	J Proteomics	98	189-205	2014		
38626	0	Mawlong I.a, Ali K.a, Kurup D.a, Yadav S.b, Tyagi A.a	Isolation and characterization of an AP2/ERF-type drought stress inducible transcription factor encoding gene from rice	J. Plant Biochem. Biotechnol.	23	42-51	2014		
38627	0	Keshavarz Hedayati A.a, Alami M.a, Motamed Zadegan A.b, Maghsoudlou Y.a, Ghorbani M.a, Daraei Garmakhany A.c, Hassan Mossavi S.d	Functional and physicochemical properties of Iranian rice bran	Minerva Biotecnol	26	31-40	2014		
38628	0	Goufo P.a, Pereira J.a b, Figueiredo N.c, Oliveira M.B.P.P.d, Carranca C.c e, Rosa E.A.S.a, Trindade H.a	Effect of elevated carbon dioxide (CO2) on phenolic acids, flavonoids, tocopherols, tocotrienols, gamma-oryzanol and antioxidant capacities of rice (Oryza sativa L.)	J. Cereal Sci.	59	15-24	2014		
38629	24388528	Jiang Q.a, Mei J.a, Gong X.D.a, Xu J.L.b, Zhang J.H.c, Teng S.c, Lin D.Z.a, Dong Y.J.a	Importance of the rice tcd9 encoding alpha subunit of chaperonin protein 60 (Cpn60alpha) for the chloroplast development during the early leaf stage	Plant Science	215-216	172-179	2014	RPOTP,TCD9	OsRpo Tp, OsRpoTp, NEP, RpoTp,OsCPn60alpha3, OsCPn60a3
38631	0	Chalmardi Z.K., Abdolzadeh A., Sadeghipour H.R.	Silicon nutrition potentiates the antioxidant metabolism of rice plants under iron toxicity	Acta Physiologiae Plantarum	36	493-502	2014		
38632	24361403	Wang B.a b, Shahzad M.F.a b, Zhang Z.a b, Sun H.a b, Han P.a b, Li F.a b, Han Z.a b	Genome-wide analysis reveals the expansion of Cytochrome P450 genes associated with xenobiotic metabolism in rice striped stem borer, Chilo suppressalis	Biochem. Biophys. Res. Commun.	443	756-760	2014		
38633	0	Yadav S.K.a b, Babu S.a c, Yadav M.K.a d, Singh Y.a e, Singh K.a f	Profitability of high value crops with organic nitrogen sources under rice (Oryza sativa) based cropping sequence	Indian Journal of Agricultural Sciences	84	343-348	2014		
38634	24388867	Chen Z.a, Dai H.a, Liu Z.a, Zhang L.a, Pang J.a, Ou J.b, Yang D.a b	Quantitation of the residual DNA from rice-derived recombinant human serum albumin	Anal. Biochem.	450	4-10	2014		
38635	0	Bhattacharyya P.a, Roy K.S.a, Dash P.K.a, Neogi S.a, Shahid M.a, Nayak A.K.a, Raja R.a, Karthikeyan S.b, Balachandar D.b, Rao K.S.a	Effect of elevated carbon dioxide and temperature on phosphorus uptake in tropical flooded rice (Oryza sativa L.)	European Journal of Agronomy	53	28-37	2014		
38636	24380819	Youngblood B.A.a, Alfano R.b, Pettit S.C.b, Zhang D.c, Dallmann H.G.c, Huang N.c, MacDonald C.C.a	Application of recombinant human leukemia inhibitory factor (LIF) produced in rice (Oryza sativa L.) for maintenance of mouse embryonic stem cells	J. Biotechnol.	172	67-72	2014		
38638	0	Xia W.a, Liu Z.a, Yang Y.a, Xiao Y.a, Mason A.S.b, Zhao S.a, Ma Z.c	Selection of reference genes for quantitative real-time PCR in Cocos nucifera during abiotic stress	Botany	92	179-186	2014		
38639	0	Fageria N.K.a, de Morais O.P.a, dos Santos A.B.a, Vasconcelos M.J.b	Phosphorus Use Efficiency in Upland Rice Genotypes Under Field Conditions	J Plant Nutr	37	633-642	2014		
38640	11244110	D R Lisch, M Freeling, R J Langham, M Y Choy	Mutator transposase is widespread in the grasses.	Plant Physiol.	125(3)	1293-303	2001	RMU1-IR36*,RMU1-A23*,_	RMu1-IR36*, RMu1-IR36,RMu1-A23*, RMu1-A23,
38641	9868931	S Yoshida, K Tamaki, K Watanabe, M Fujino, C Nakamura	A maize MuDR-like element expressed in rice callus subcultured with proline.	Hereditas	129(1)	95-9	1998	_,_	Os-MuDR,Os-MURA
38642	11847307	Azevedo C., Sadanandom A., Kitagawa K., Freialdenhoven A., Shirasu K., Paul Schulze-Lefert	The Rar1 interactor SGT1, an essential component of R gene-triggered disease resistance.	Science	295(5562)	2073-6	2002	_	OsSgt1, SGT1, OsSGT1, Os SGT1
38643	23671845	Rawal H.C., Singh N.K., Sharma T.R.	Conservation, divergence, and genome-wide distribution of PAL and POX A gene families in plants	International Journal of Genomics	2013	678969	2013	PAL1,_,_,_,PAL,_,_,PAL1,_	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL05, PAL05, OsPAL3, PAL5, PAL3,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,PAL03, OsPAL8 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2
38644	24884360	Wu Z., Gui S., Wang S., Ding Y.	Molecular evolution and functional characterisation of an ancient phenylalanine ammonia-lyase gene (NnPAL1) from Nelumbo nucifera: novel insight into the evolution of the PAL family in angiosperms.	BMC Evol. Biol.	14	100	2014	_,_,_,PAL,_,_,PAL1,PAL1,_	OsPAL05, PAL05, OsPAL3, PAL5, PAL3,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,PAL03, OsPAL8 
38645	20862311	Rebecca S Bart, Chern M., Miguel E Vega-S?nchez, Canlas P., Pamela C Ronald	Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae.	PLoS Genet.	6(9)	e1001123	2010	_,JIOSPR10,PR10B,4CL3,XA21,PAL,NH1	Snl6, OsCCR2, CCR2 ,JIOsPR10, OsPR10, PR10 ,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b ,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,Xa21*, Xa21, OsXA21,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
38646	11141171	I Blilou, J A Ocampo, J M Garc?a-Garrido	Induction of LTP (lipid transfer protein) and PAL (phenylalanine ammonia-lyase) gene expression in rice roots colonized by the arbuscular mycorrhizal fungus Glomus mosseae.	J. Exp. Bot.	51(353)	1969-77	2000	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
38647	10875920	Z He, Z Y Wang, J Li, Q Zhu, C Lamb, P Ronald, J Chory	Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1.	Science	288(5475)	2360-3	2000	PAL1,RCH10,XA21	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,RCH10*, Cht13, Cht12, Rcht2,Xa21*, Xa21, OsXA21
38648	7580258	Q Zhu, T Dabi, C Lamb	TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro.	Plant Cell	7(10)	1681-9	1995	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
38649	7599645	Q Zhu, J Chappell, S A Hedrick, C Lamb	Accurate in vitro transcription from circularized plasmid templates by plant whole cell extracts.	Plant J.	7(6)	1021-30	1995	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
38650	9112783	J D Everard, C Cantini, R Grumet, J Plummer, W H Loescher	Molecular cloning of mannose-6-phosphate reductase and its developmental expression in celery.	Plant Physiol.	113(4)	1427-35	1997	_	OsM6PR1, OsM6PR2, M6PR, OsS6PDH, S6PDH
38651	11169193	K Turcotte, S Srinivasan, T Bureau	Survey of transposable elements from rice genomic sequences.	Plant J.	25(2)	169-79	2001	_,STOW-VIII,STOW-IV,STOW-I,STOW-II,STOW-III,STOW-V,STOW-VI,STOW-VII,STOW-IX,STOW-X,_,BASHO,_	MULE-IV,Stow-VIII,Stow-IV,Stow-I,Stow-II,Stow-III,Stow-V,Stow-VI,Stow-VII,Stow-IX,Stow-X,MULE-I,Basho,PCF2, OsPCF2
38652	18620041	Yang Z., Zhou Y., Wang X., Gu S., YU J., Liang G., Yan C., Xu C.	Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.	Genomics	92(4)	246-53	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsTLP13, OsTLP4,OsTLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,OsTLP7, OsTLP11, OsFbox398, Os_F0421,OsTLP14, OsTLP6, OsFbox139, Os_F0681,OsTLP3, OsTLP7, OsFbox240, Os_F0401,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,OsTLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,OsTLP6, OsTLP13, OsFbox569, Os_F0461,OsTLP4, OsTLP14, OsFbox645, Os_F0315,OsTLP11, OsTLP10, OsFbox278, Os_F0631,OsTLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,OsTLP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446
38653	18775973	Yang X., Udaya C Kalluri, Jawdy S., Lee E Gunter, Yin T., Timothy J Tschaplinski, David J Weston, Ranjan P., Gerald A Tuskan	The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants.	Plant Physiol.	148(3)	1189-200	2008	LC4,_,_,_,_,_,_,_,_,_,ZTL1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,ZTL2,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,APO1,FKF1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,EP3	OsFbox053, OsFbox53, Os_F0309, OsLC4,OsFbox625, Os_F0458,OsFbox670, Os_F0419,OsFbox604, Os_F0232,OsFbox001, OsFbox1, Os_F0615, OsFBX1,OsFbox557, Fbox557, Os_F0256,OsWD40-184, OsFbox571, Os_F0380,OsFbox592, Os_F0128, Fbox-4,OsTLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,OsZTL1, OsFbox066, OsFbox66, Os_F0484,OsKMD1, OsFbox074, OsFbox74, Os_F0323,OsFBK12, OsFbox130, Os_F0642,JMJ711, OsFbox149, Os_F0347,OsWD40-110, OsFbox233, Os_F0069,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,OsFbox304, Os_F0494,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,OsFBX234, OsFbox369, Os_F0191,OsFbox003, OsFbox3, Os_F0209, OsFBX3,OsFbox005, OsFbox5, Os_F0747, OsFBX4,OsFbox004, OsFbox4, Os_F0387,OsFbox012, OsFbox12, Os_F0539, OsFBX8,OsFbox008, OsFbox8, Os_F0329,OsFbox009, OsFbox9, Os_F0616,OsFbox017, OsFbox17, Os_F0392,OsFbox018, OsFbox18, Os_F0259,OsFbox020, OsFbox20, Os_F0674,OsFbox021, OsFbox21, Os_F0117,OsFbox022, OsFbox22, Os_F0366,OsFbox024, OsFbox24, Os_F0087,OsFbox027, OsFbox27, Os_F0595,OsRALyase, OsFbox090, OsFbox90, Os_F0337,OsKMD3, OsFbox096, OsFbox96, Os_F0169,MAIF1, OsFbox104, Os_F0528,OsTLP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,OsTLP14, OsTLP6, OsFbox139, Os_F0681,OsDRF1, OsFbox209, Os_F0001,OsTLP3, OsTLP7, OsFbox240, Os_F0401,OsTLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,OsKMD2, OsFbox314, Os_F0507,OsFbox594, Os_F0295, Fbox-1,OsTLP7, OsTLP11, OsFbox398, Os_F0421,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,OsFbx352, OsFbox516, Os_F0046,OsTLP6, OsTLP13, OsFbox569, Os_F0461,OsFbox002, OsFbox2,OsFbox591, Os_F0435, Fbox-5,OsKMD4, OsFbox596, Os_F0436,JMJ710, OsFbox611, Os_F0574,OsTLP4, OsTLP14, OsFbox645, Os_F0315,OsFbox013, OsFbox13, Os_F0590, OsFBX10,OsFbox014, OsFbox14, Os_F0467, OsFBX11,OsFbox015, OsFbox15, Os_F0481, OsFBX12,OsFbox016, OsFbox16, Os_F0471, OsFBX13,OsTLP11, OsTLP10, OsFbox278, Os_F0631,OsFbox026, OsFbox26, Os_F0242,OsTLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,OsFbox217, Os_F0121, MOF, OsMOF,OsFbox028, OsFbox28, Os_F0158,OsFbox032, OsFbox32, Os_F0271,OsFbox040, OsFbox40, Os_F0476,OsFbox029, OsFbox29, Os_F0384,OsFbox031, OsFbox31, Os_F0326,OsFbox030, OsFbox30, Os_F0577,OsFbox035, OsFbox35, Os_F0556,OsFbox036, OsFbox36, Os_F0051,OsFbox037, OsFbox37, Os_F0332,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,OsFbox044, OsFbox44, Os_F0491,OsFbox045, OsFbox45, Os_F0307,OsFbox046, OsFbox46, Os_F0609,OsFbox047, OsFbox47, Os_F0754,OsFbox048, OsFbox48, Os_F0202,OsFbox049, OsFbox49, Os_F0364,OsFbox051, OsFbox51, Os_F0330,OsFbox052, OsFbox52, Os_F0755,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,OsFbox056, OsFbox56, Os_F0469,OsFbox057, OsFbox57, Os_F0570,OsFbox058, OsFbox58, Os_F0591,OsFbox059, OsFbox59, Os_F0692,OsFbox060, OsFbox60, Os_F0125,OsFbox061, OsFbox61, Os_F0473,OsFbox062, OsFbox62, Os_F0282,OsFbox063, OsFbox63, Os_F0090,OsFbox064, OsFbox64, Os_F0285,OsFbox065, OsFbox65, Os_F0311,OsFbox068, OsFbox68, Os_F0346,OsFbox069, OsFbox69, Os_F0227,OsFbox070, OsFbox70, Os_F0151,OsFbox071, OsFbox71, Os_F0306,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,OsFbox073, OsFbox73, Os_F0359,OsFbox075, OsFbox75, Os_F0514,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,OsFbox080, OsFbox80, Os_F0533,OsFbox081, OsFbox81, Os_F0375,OsFbox082, OsFbox82, Os_F0509,OsFbox083, OsFbox83, Os_F0360,OsFbox084, OsFbox84, Os_F0452,OsFbox086, OsFbox86, Os_F0482,OsFbox087, OsFbox87, Os_F0536,OsFbox088, OsFbox88, Os_F0475,OsFbox089, OsFbox89, Os_F0377,OsFbox091, OsFbox91, Os_F0517,OsFbox092, OsFbox92, Os_F0704,OsFbox093, OsFbox93, Os_F0270,OsFbox094, OsFbox94, Os_F0336,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,OsFbox023, OsFbox23, Os_F0211, OsSTA20,OsFbox095, OsFbox95, Os_F0274, OsSTA64,SaF, OsFbox019, OsFbox19, Os_F0070,OsFbox097, OsFbox97, Os_F0402,OsFbox098, OsFbox98, Os_F0174,OsFbox099, OsFbox99, Os_F0180,OsFbox101, Os_F0678,OsFbox102, Os_F0177,OsFbox103, Os_F0039,OsFbox105, Os_F0549,OsFbox106, Os_F0496,OsFbox108, Os_F0236,OsFbox125, Os_F0403,OsFbox110, Os_F0551,OsFbox109, Os_F0628,OsFbox111, Os_F0005,OsFbox112, Os_F0657,OsFbox113, Os_F0234,OsFbox114, Os_F0103,OsFbox115, Os_F0639,OsFbox116, Os_F0291,OsFbox117, Os_F0679,OsFbox119, Os_F0693,OsFbox118, Os_F0460,OsFbox120, Os_F0441,OsFbox121, Os_F0352,OsFbox122, Os_F0288,OsFbox123, Os_F0289,OsFbox124, Os_F0262,OsFbox128, Os_F0506,OsFbox085, OsFbox85, Os_F0602,OsFbox127, Os_F0532,OsFbox131, Os_F0292,OsFbox135, Os_F0341,OsFbox137, Os_F0544,OsFbox136, Os_F0187,OsFbox134, Os_F0443,OsFbox133, Os_F0449,OsFbox132, Os_F0228,OsFbox138, Os_F0340,OsFbox140, Os_F0065,OsFbox141, Os_F0122,OsFbox142, Os_F0023,OsFbox100,OsFbox129, Os_F0178,OsFbox067, OsFbox67, Os_F0477,OsFbox143, Os_F0129,OsFbox152, Os_F0251,OsFbox154, Os_F0130,OsFbox158, Os_F0008,OsFbox159, Os_F0006,OsFbox160, Os_F0017,OsFbox153,OsFbox144, Os_F0237,OsFbox145, Os_F0026,OsFbox146, Os_F0179,OsFbox147, Os_F0266,OsFbox148, Os_F0426,OsFbox150, Os_F0123,OsFbox151, Os_F0222,OsFbox155, Os_F0503,OsFbox234, Os_F0170,OsFbox157, Os_F0188,OsFbox161, Os_F0076,OsFbox126, Os_F0788,OsFbox162, Os_F0012,OsFbox163, Os_F0009,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,OsFbox609, Os_F0370, OsFKF1,OsTIR1, TIR1, OsFbox248, Os_F0717,OsFbox164, Os_F0040,OsFbox167, Os_F0244,OsFbox168, Os_F0132,OsFbox169, Os_F0378,OsFbox170, Os_F0296,OsFbox171, Os_F0153,OsFbox172, Os_F0303,OsFbox173, Os_F0094,OsFbox174, Os_F0714,OsFbox175, Os_F0633,OsFbox176, Os_F0077,OsFbox177, Os_F0120,OsFbox179, Os_F0161,OsFbox180, Os_F0342,OsFbox181, Os_F0655,OsFbox184, Os_F0197,OsFbox185, Os_F0197,OsFbox186, Os_F0322,OsFbox187, Os_F0245,OsFbox188, Os_F0182,OsFbox189, Os_F0133,OsFbox190, Os_F0204,OsFbox191, Os_F0109,OsFbox192, Os_F0688,OsFbox193, Os_F0515,OsFbox237, Os_F0241,OsFbox194, Os_F0635,OsFbox196, Os_F0324,OsFbox195, Os_F0144,OsFbox197, Os_F0620,OsFbox198, Os_F0644,OsFbox199, Os_F0630,OsFbox200, Os_F0645,OsFbox166, Os_F0438,OsFbox156, Os_F0603,OsFbox201, Os_F0552,OsFbox202, Os_F0749,OsFbox203, Os_F0600,OsFbox204, Os_F0139,OsFbox205, Os_F0044,OsFbox207, Os_F0611,OsFbox208, Os_F0775,OsFbox211, Os_F0331,OsFbox212, Os_F0238,OsFbox213, Os_F0422,OsFbox214, Os_F0430,OsFbox215, Os_F0110,OsFbox216, Os_F0328,OsFbox218, Os_F0597,OsFbox219, Os_F0485,OsFbox220, Os_F0518,OsFbox221, Os_F0036,OsFbox222, Os_F0047,OsFbox224, Os_F0093,OsFbox223, Os_F0055,OsFbox225, Os_F0540,OsFbox226, Os_F0022,OsFbox227, Os_F0286,OsFbox228, Os_F0553,OsFbox229, Os_F0493,OsFbox230, Os_F0308,OsFbox231, Os_F0565,OsFbox232, Os_F0576,OsFbox235, Os_F0248,OsFbox236, Os_F0264,OsFbox238, Os_F0385,OsFbox239, Os_F0304,OsFbox242, Os_F0706,OsFbox243, Os_F0545,OsFbox241, Os_F0593,OsFbox244, Os_F0497,OsFbox245, Os_F0037,OsFbox246, Os_F0004,OsFbox247, Os_F0660,OsFbox249, Os_F0030,OsFbox250, Os_F0011,OsFbox251, Os_F0085,OsFbox252, Os_F0066,OsFbox253, Os_F0052,OsFbox254, Os_F0290,OsFbox255, Os_F0067,OsFbox256, Os_F0111,OsFbox257, Os_F0400,OsFbox258, Os_F0658,OsFbox261, Os_F0604,OsFbox262, Os_F0703,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,OsFbox266, Os_F0434,OsFbox268, Os_F0080,OsFbox269, Os_F0444,OsFbox270, Os_F0454,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,OsFbox275, Os_F0483,OsFbox276, Os_F0412,OsFbox183, Fbox183, Os_F0203, F-box119,OsFbox277, Os_F0150,OsFbox279, Os_F0100,OsFbox280, Os_F0260,OsFbox281, Os_F0379,OsFbox283, Os_F0368,OsFbox284, Os_F0301,OsFbox285, Os_F0166,OsFbox286, Os_F0619,OsFbox287, Os_F0750,OsFbox288, Os_F0622,OsFbox289, Os_F0510,OsFbox290, Os_F0343,OsFbox292, Os_F0618,OsFbox293, Os_F0585,OsFbox294, Os_F0333,OsFbox295, Os_F0299,OsFbox296, Os_F0612,OsFbox297, Os_F0442,OsFbox298, Os_F0486,OsFbox299, Os_F0015,OsFbox300, Os_F0003,OsFbox301, Os_F0013,OsFbox302, Os_F0143,OsFbox303, Os_F0405,OsFbox305, Os_F0041,OsFbox306, Os_F0305,OsFbox307, Os_F0034,OsFbox308, Os_F0081,OsFbox309, Os_F0312,OsFbox310, Os_F0057,OsFbox311, Os_F0115,OsFbox313, Os_F0104,OsFbox354, Os_F0275,OsFbox312, Os_F0546,OsFbox315, Os_F0369,OsFbox317, Os_F0038,OsFbox318, Os_F0416,OsFbox319, Os_F0429,OsFbox320, Os_F0613,OsFbox282, Os_F0643,OsFbox322, Os_F0520,OsFbox323, Os_F0105,OsFbox324, Os_F0220,OsFbox326, Os_F0327,OsFbox327, Os_F0126,OsFbox328, Os_F0254,OsFbox329, Os_F0529,OsFbox330, Os_F0521,OsFbox331, Os_F0273,OsFbox332, Os_F0267,OsFbox333, Os_F0159,OsFbox334, Os_F0361,OsFbox335, Os_F0487,OsFbox336, Os_F0293,OsFbox337, Os_F0302,OsFbox338, Os_F0537,OsFbox339, Os_F0636,OsFbox340, Os_F0124,OsFbox343, Os_F0141,OsFbox342, Os_F0418,OsFbox344, Os_F0183,OsFbox345, Os_F0495,OsFbox346, Os_F0078,OsFbox347, Os_F0072,OsFbox348, Os_F0035,OsFbox349, Os_F0252,OsFbox350, Os_F0212,OsFbox351, Os_F0298,OsFbox352, Os_F0525,OsFbox353, Os_F0501,OsFbox355, Os_F0349,OsFbox356, Os_F0118,OsFbox357, Os_F0033,OsFbox358, Os_F0098,OsFbox359, Os_F0431,OsFbox360, Os_F0235,OsFbox361, Os_F0171,OsFbox362, Os_F0439,OsFbox363, Os_F0353,OsFbox364, Os_F0107,OsFbox365, Os_F0205,OsFbox366, Os_F0784,OsFbox367, Os_F0432,OsFbox368, Os_F0425,OsFbox370, Os_F0625,OsFbox371, Os_F0357,OsFbox372, Os_F0371,OsFbox377, Os_F0465,OsFbox378, Os_F0217,OsFbox379, Os_F0261,OsFbox373, Os_F0163,OsFbox375, Os_F0062,OsFbox376, Os_F0063,OsFbox380, Os_F0423,OsFbox384, Os_F0579,OsFbox381, Os_F0656,OsFbox382, Os_F0731,OsFbox383, Os_F0702,OsFbox385, Os_F0148,OsFbox386, Os_F0523,OsFbox387, Os_F0534,OsFbox388, Os_F0605,OsFbox341, Fbox341, Os_F0215,OsFbox374, Os_F0598,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,OsFbox389, Os_F0673,OsFbox390, Os_F0759,OsFbox391, Os_F0082,OsFbox392, Os_F0313,OsFbox393, Os_F0462,OsFbox394, Os_F0722,OsFbox395, Os_F0032,OsFbox397, Os_F0108,OsFbox399, Os_F0281,OsFbox400, Os_F0541,OsFbox408, Os_F0490,OsFbox401, Os_F0042,OsFbox403, Os_F0338,OsFbox404, Os_F0566,OsFbox405, Os_F0623,OsFbox406, Os_F0075,OsFbox407, Os_F0406,OsFbox409, Os_F0265,OsFbox410, Os_F0192,OsFbox411, Os_F0280,OsFbox413, Os_F0321,OsFbox414, Os_F0654,OsFbox415, Os_F0498,OsFbox416, Os_F0464,OsFbox417, Os_F0682,OsFbox418, Os_F0453,OsFbox420, Os_F0206,OsFbox421, Os_F0249,OsFbox423, Os_F0386,OsFbox422, Os_F0246,OsFbox424, Os_F0348,OsFbox456, Fbox456, Os_F0543,OsFbox425, Os_F0168,OsFbox426, Os_F0184,OsFbox427, Os_F0221,OsFbox428, Os_F0440,OsFbox429, Os_F0367,OsFbox430, Os_F0456,OsFbox431, Os_F0614,OsFbox432, Os_F0694,OsFbox433, Os_F0239,OsFbox435, Os_F0317,OsFbox436, Os_F0146,OsFbox437, Os_F0277,OsFbox438, Os_F0427,OsFbox439, Os_F0320,OsFbox440, Os_F0542,OsFbox441, Os_F0010,OsFbox444, Os_F0648,OsFbox445, Os_F0550,OsFbox447, Os_F0225,OsFbox446, Os_F0095,OsFbox448, Os_F0428,OsFbox449, Os_F0345,OsFbox450, Os_F0185,OsFbox452, Os_F0193,OsFbox451, Os_F0189,OsFbox453, Os_F0339,OsFbox454, Os_F0207,OsFbox455, Os_F0173,OsFbox457, Os_F0575,OsFbox458, Os_F0530,OsFbox459, Os_F0074,OsFbox460, Os_F0200,OsFbox461, Os_F0025,OsFbox462, Os_F0019,OsFbox463, Os_F0230,OsFbox464, Os_F0048,OsFbox465, Os_F0016,OsFbox466, Os_F0587,OsFbox467, Os_F0397,OsFbox468, Os_F0398,OsFbox469, Os_F0272,OsFbox470, Os_F0504,OsFbox471, Os_F0538,OsFbox472, Os_F0599,OsFbox473, Os_F0455,OsFbox474, Os_F0632,OsFbox475, Os_F0634,OsFbox476, Os_F0457,OsFbox477, Os_F0147,OsFbox478, Os_F0354,OsFbox479, Os_F0399,OsFbox480, Os_F0388,OsFbox482, Os_F0167,OsFbox483, Os_F0233,OsFbox484, Os_F0373,OsFbox396, Os_F0578, OsMsr9,OsFbox491, Os_F0580,OsFbox485, Os_F0149,OsFbox486, Os_F0355,OsFbox487, Os_F0548,OsFbox494, Os_F0637,OsFbox495, Os_F0522,OsFbox488, Os_F0562,OsFbox489, Os_F0053,OsFbox490, Os_F0091,OsFbox492, Os_F0175,OsFbox493, Os_F0049,OsFbox496, Os_F0287,OsFbox497, Os_F0433,OsFbox498, Os_F0145,OsFbox499, Os_F0020,OsFbox500, Os_F0186,OsFbox412, Fbox412, Os_F0356,OsFbox501, Os_F0050,OsFbox502, Os_F0060,OsFbox503, Os_F0101,OsFbox505, Os_F0638,OsFbox507, Os_F0071,OsFbox508, Os_F0127,OsFbox510, Os_F0210,OsFbox511, Os_F0112,OsFbox512, Os_F0102,OsFbox513, Os_F0131,OsFbox514, Os_F0140,OsFbox515, Os_F0086,OsFbox517, Os_F0054,OsFbox518, Os_F0218,OsFbox520, Os_F0588,OsFbox521, Os_F0526,OsFbox522, Os_F0408,OsFbox523, Os_F0629,OsFbox524, Os_F0561,OsFbox525, Os_F0176,OsFbox526, Os_F0056,OsFbox527, Os_F0059,OsFbox528, Os_F0224,OsFbox534, Os_F0527,OsFbox531, Os_F0024,OsFbox532, Os_F0058,OsFbox533, Os_F0350,OsFbox535, Os_F0208,OsFbox536, Os_F0201,OsFbox537, Os_F0165,OsFbox538, Os_F0470,OsFbox539, Os_F0316,OsFbox481, Os_F0362, FBX322 ,OsFbox540, Os_F0468,OsFbox541, Os_F0409,OsFbox543, Os_F0162,OsFbox544, Os_F0652,OsFbox545, Os_F0535,OsFbox546, Os_F0513,OsFbox547, Os_F0119,OsFbox548, Os_F0160,OsFbox549, Os_F0255,OsFbox550, Os_F0263,OsFbox551, Os_F0073,OsFbox552, Os_F0216,OsFbox554, Os_F0677,OsFbox555, Os_F0152,OsFbox558, Os_F0376,OsFbox559, Os_F0572,OsFbox560, Os_F0582,OsFbox561, Os_F0014,OsFbox564, Os_F0113,OsFbox562, Os_F0002,OsFbox563, Os_F0773,OsFbox565, Os_F0027,OsFbox566, Os_F0279,OsFbox567, Os_F0713,OsFbox568, Os_F0335,OsFbox570, Os_F0219,OsFbox572, Os_F0135,OsFbox577, Os_F0135,OsFbox578, Os_F0136,OsFbox579, Os_F0334,OsFbox580, Os_F0096,OsFbox582, Os_F0511,OsFbox583, Os_F0363,OsFbox584, Os_F0231,OsFbox585, Os_F0294,OsFbox587, Os_F0097,OsFbox595, Os_F0194,OsFbox597, Os_F0447,OsFbox598, Os_F0672,OsFbox519,OsFbox600, Os_F0472,OsFbox601, Os_F0719,OsFbox602, Os_F0512,OsFbox593, Os_F0278, Fbox-3,OsFbox590, Os_F0068, Fbox-6,OsFbox589, Os_F0137, Fbox-8,OsFbox588, Os_F0365, Fbox-10,OsFbox586, Os_F0088, Fbox-13,OsFbox599,OsFbox509, Os_F0258, OsADF, ADF,OsFbox603, Os_F0489,OsFbox605, Os_F0437,OsFbox606, Os_F0155,OsFbox607, Os_F0045,OsFbox608, Os_F0043,OsFbox616, Os_F0314,OsFbox617, Os_F0505,OsFbox621, Os_F0621,OsFbox622, Os_F0499,OsFbox623, Os_F0502,OsFbox630, Os_F0318,OsFbox636, Os_F0774,OsFbox637, Os_F0061,OsFbox641, Os_F0319,OsFbox626,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,OsFbox573,OsFbox574,OsFbox575,OsFbox576,OsFbox581, Os_F0649,OsFbox610, Os_F0557,OsFbox612, Os_F0268,OsFbox613, Os_F0243,OsFbox614, Os_F0381,OsFbox615, Os_F0099,OsFbox618, Os_F0583,OsFbox620, Os_F0358,OsFbox624, Os_F0226,OsFbox627, Os_F0089,OsFbox628, Os_F0028,OsFbox629, Os_F0564,OsFbox631, Os_F0064,OsFbox632, Os_F0391,OsFbox633, Os_F0413,OsFbox634, Os_F0372,OsFbox635, Os_F0310,OsFbox648, Os_F0414,OsFbox638, Os_F0021,OsFbox639, Os_F0382,OsFbox640, Os_F0395,OsFbox642, Os_F0213,OsFbox643,OsFbox644, Os_F0725,OsFbox646, Os_F0134,OsFbox647, Os_F0466,OsFbox649, Os_F0410,OsFbox650, Os_F0568,OsFbox651, Os_F0018,OsFbox652, Os_F0284,OsFbox553, Os_F0250,OsFbox619, Os_F0190, OsSTA265,OsFbox654, Os_F0092,OsFbox655, Os_F0116,OsFbox657, Os_F0500,OsFbox658, Os_F0589,OsFbox659, Os_F0424,OsFbox660, Os_F0569,OsFbox661, Os_F0665,OsFbox662, Os_F0567,OsFbox663, Os_F0276,OsFbox664, Os_F0592,OsFbox665, Os_F0555,OsFbox666, Os_F0411,OsFbox667, Os_F0594,OsFbox669, Os_F0383,OsFbox671, Os_F0524,OsFbox673, Os_F0735,OsFbox674, Os_F0164,OsFbox676, Os_F0269,OsFbox677, Os_F0195,OsFbox678, Os_F0417,OsFbox675, Os_F0744,OsFbox656,OsFbox653, Os_F0172,OsFbox506, Os_F0596,OsFbox210,OsFbox504, Os_F0474,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,OsFbox010, OsFbox10, Os_F0156, OsFBX6,OsFbox011, OsFbox11, Os_F0196, OsFBX7,OsFbox178, Os_F0705,OsFbox025, OsFbox25, Os_F0325,OsFbox529, Os_F0667, OsEnS-132,OsFbox007, OsFbox7, Os_F0351,OsFbox291, Os_F0516,OsFbox668, Os_F0389,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,OsFbox542, Os_F0480, OsSTA237,OsFbox443, Os_F0084, OsSTA212,OsFbox165, Os_F0229,OsFbox556, Os_F0154,OsFbox672, Os_F0707,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,OsFbox182, Os_F0223, F-box118,EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3
38654	21297981	Hua Z., Zou C., Shin-Han Shiu, Richard D Vierstra	Phylogenetic comparison of F-Box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift.	PLoS ONE	6(1)	e16219	2011	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FKF1,_,ZYGO1,_,_,EP3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,ZTL1,_,_,_,_,_,_,LC4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,APO1,_,_,_,_,ZTL2,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,D3	Os_F0791,OsFbox177, Os_F0120,OsFbox579, Os_F0334,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,Os_F0718,Fbox-9-pseudo, Os_F0394,Os_F0685,Os_F0691,Os_F0765,Os_F0734,OsFbox322, Os_F0520,Os_F0079,Os_F0771,Os_F0745,Os_F0390,Os_F0792,Os_F0716,Os_F0795,Os_F0786,Os_F0787,Os_F0727,Os_F0740,Os_F0448,Os_F0753,Os_F0610,OsFbox604, Os_F0232,Os_F0751,OsFbox601, Os_F0719,Os_F0668,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,Os_F0712,Os_F0781,Os_F0607,Os_F0300,OsFbox675, Os_F0744,Os_F0770,OsFbox609, Os_F0370, OsFKF1,OsFbox554, Os_F0677,Os_F0777,OsFbox557, Fbox557, Os_F0256,OsTIR1, TIR1, OsFbox248, Os_F0717,EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,OsFbox001, OsFbox1, Os_F0615, OsFBX1,OsFbox020, OsFbox20, Os_F0674,OsFbox003, OsFbox3, Os_F0209, OsFBX3,OsFbox005, OsFbox5, Os_F0747, OsFBX4,OsFbox004, OsFbox4, Os_F0387,OsFbox012, OsFbox12, Os_F0539, OsFBX8,OsFbox008, OsFbox8, Os_F0329,OsFbox009, OsFbox9, Os_F0616,OsFbox017, OsFbox17, Os_F0392,OsFbox018, OsFbox18, Os_F0259,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,OsFbox021, OsFbox21, Os_F0117,OsFbox022, OsFbox22, Os_F0366,OsFbox024, OsFbox24, Os_F0087,OsFbox027, OsFbox27, Os_F0595,OsFbox013, OsFbox13, Os_F0590, OsFBX10,OsFbox014, OsFbox14, Os_F0467, OsFBX11,OsFbox015, OsFbox15, Os_F0481, OsFBX12,OsFbox016, OsFbox16, Os_F0471, OsFBX13,OsFbox026, OsFbox26, Os_F0242,OsTLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,OsFbox028, OsFbox28, Os_F0158,OsFbox032, OsFbox32, Os_F0271,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,OsFbox040, OsFbox40, Os_F0476,OsFbox029, OsFbox29, Os_F0384,OsFbox031, OsFbox31, Os_F0326,OsFbox030, OsFbox30, Os_F0577,OsFbox035, OsFbox35, Os_F0556,OsFbox036, OsFbox36, Os_F0051,OsFbox037, OsFbox37, Os_F0332,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,OsFbox044, OsFbox44, Os_F0491,OsFbox045, OsFbox45, Os_F0307,OsFbox046, OsFbox46, Os_F0609,OsFbox047, OsFbox47, Os_F0754,OsFbox048, OsFbox48, Os_F0202,OsFbox049, OsFbox49, Os_F0364,OsTLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,OsFbox051, OsFbox51, Os_F0330,OsFbox052, OsFbox52, Os_F0755,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,OsFbox056, OsFbox56, Os_F0469,OsFbox057, OsFbox57, Os_F0570,OsFbox058, OsFbox58, Os_F0591,OsFbox059, OsFbox59, Os_F0692,OsFbox060, OsFbox60, Os_F0125,OsFbox061, OsFbox61, Os_F0473,OsFbox062, OsFbox62, Os_F0282,OsFbox063, OsFbox63, Os_F0090,OsFbox064, OsFbox64, Os_F0285,Os_F0793,OsFbox065, OsFbox65, Os_F0311,OsZTL1, OsFbox066, OsFbox66, Os_F0484,OsFbox068, OsFbox68, Os_F0346,OsFbox069, OsFbox69, Os_F0227,OsFbox070, OsFbox70, Os_F0151,OsFbox071, OsFbox71, Os_F0306,Os_F0748,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,OsFbox053, OsFbox53, Os_F0309, OsLC4,OsFbox073, OsFbox73, Os_F0359,OsKMD1, OsFbox074, OsFbox74, Os_F0323,OsFbox075, OsFbox75, Os_F0514,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,OsFbox080, OsFbox80, Os_F0533,OsFbox081, OsFbox81, Os_F0375,OsFbox082, OsFbox82, Os_F0509,OsFbox083, OsFbox83, Os_F0360,OsFbox084, OsFbox84, Os_F0452,OsFbox086, OsFbox86, Os_F0482,OsFbox087, OsFbox87, Os_F0536,OsFbox088, OsFbox88, Os_F0475,OsFbox089, OsFbox89, Os_F0377,OsRALyase, OsFbox090, OsFbox90, Os_F0337,OsFbox091, OsFbox91, Os_F0517,OsFbox092, OsFbox92, Os_F0704,OsFbox093, OsFbox93, Os_F0270,OsFbox094, OsFbox94, Os_F0336,OsKMD3, OsFbox096, OsFbox96, Os_F0169,OsFbox097, OsFbox97, Os_F0402,OsFbox023, OsFbox23, Os_F0211, OsSTA20,OsFbox095, OsFbox95, Os_F0274, OsSTA64,SaF, OsFbox019, OsFbox19, Os_F0070,OsFbox098, OsFbox98, Os_F0174,OsFbox099, OsFbox99, Os_F0180,OsFbox101, Os_F0678,OsFbox102, Os_F0177,OsFbox103, Os_F0039,MAIF1, OsFbox104, Os_F0528,OsTLP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,OsFbox105, Os_F0549,OsFbox106, Os_F0496,OsFbox108, Os_F0236,OsFbox125, Os_F0403,OsFbox110, Os_F0551,OsFbox109, Os_F0628,OsFbox111, Os_F0005,OsFbox112, Os_F0657,OsFbox113, Os_F0234,OsFbox114, Os_F0103,OsFbox115, Os_F0639,OsFbox116, Os_F0291,OsFbox117, Os_F0679,OsFbox119, Os_F0693,OsFbox118, Os_F0460,OsFbox120, Os_F0441,OsFbox121, Os_F0352,OsFbox122, Os_F0288,OsFbox123, Os_F0289,OsFbox124, Os_F0262,OsFbox128, Os_F0506,OsFbox085, OsFbox85, Os_F0602,OsFbox127, Os_F0532,OsFbox067, OsFbox67, Os_F0477,OsFBK12, OsFbox130, Os_F0642,OsFbox131, Os_F0292,OsFbox135, Os_F0341,OsFbox137, Os_F0544,OsFbox136, Os_F0187,OsFbox134, Os_F0443,OsFbox133, Os_F0449,OsFbox132, Os_F0228,OsFbox138, Os_F0340,OsTLP14, OsTLP6, OsFbox139, Os_F0681,OsFbox140, Os_F0065,OsFbox141, Os_F0122,OsFbox142, Os_F0023,OsFbox143, Os_F0129,OsFbox129, Os_F0178,OsFbox152, Os_F0251,OsFbox154, Os_F0130,OsFbox158, Os_F0008,OsFbox159, Os_F0006,OsFbox160, Os_F0017,OsFbox145, Os_F0026,OsFbox146, Os_F0179,OsFbox147, Os_F0266,OsFbox148, Os_F0426,JMJ711, OsFbox149, Os_F0347,OsFbox150, Os_F0123,OsFbox151, Os_F0222,OsFbox155, Os_F0503,OsFbox234, Os_F0170,OsFbox157, Os_F0188,OsFbox161, Os_F0076,OsFbox126, Os_F0788,OsFbox162, Os_F0012,OsFbox163, Os_F0009,OsFbox164, Os_F0040,OsFbox167, Os_F0244,OsFbox168, Os_F0132,OsFbox169, Os_F0378,OsFbox170, Os_F0296,OsFbox171, Os_F0153,OsFbox172, Os_F0303,OsFbox173, Os_F0094,OsFbox174, Os_F0714,OsFbox175, Os_F0633,OsFbox176, Os_F0077,OsFbox179, Os_F0161,OsFbox180, Os_F0342,OsFbox181, Os_F0655,OsFbox184, Os_F0197,OsFbox185, Os_F0197,OsFbox186, Os_F0322,OsFbox187, Os_F0245,OsFbox188, Os_F0182,OsFbox189, Os_F0133,OsFbox190, Os_F0204,OsFbox191, Os_F0109,OsFbox192, Os_F0688,OsFbox193, Os_F0515,OsFbox237, Os_F0241,OsFbox194, Os_F0635,OsFbox196, Os_F0324,OsFbox195, Os_F0144,OsFbox197, Os_F0620,OsFbox198, Os_F0644,OsFbox199, Os_F0630,OsFbox200, Os_F0645,OsFbox165, Os_F0229,OsFbox166, Os_F0438,OsFbox156, Os_F0603,OsFbox201, Os_F0552,OsFbox202, Os_F0749,OsFbox203, Os_F0600,OsFbox204, Os_F0139,OsFbox205, Os_F0044,OsDRF1, OsFbox209, Os_F0001,OsFbox207, Os_F0611,OsFbox208, Os_F0775,OsFbox211, Os_F0331,OsFbox212, Os_F0238,OsFbox213, Os_F0422,OsFbox214, Os_F0430,OsFbox215, Os_F0110,OsFbox216, Os_F0328,OsFbox218, Os_F0597,OsFbox219, Os_F0485,OsFbox220, Os_F0518,OsFbox221, Os_F0036,OsFbox222, Os_F0047,OsFbox224, Os_F0093,OsFbox223, Os_F0055,OsFbox225, Os_F0540,OsFbox226, Os_F0022,OsFbox227, Os_F0286,OsFbox228, Os_F0553,OsFbox229, Os_F0493,OsFbox230, Os_F0308,OsFbox231, Os_F0565,OsFbox232, Os_F0576,OsWD40-110, OsFbox233, Os_F0069,OsFbox235, Os_F0248,OsFbox236, Os_F0264,OsFbox238, Os_F0385,OsFbox239, Os_F0304,OsFbox242, Os_F0706,OsFbox243, Os_F0545,OsFbox241, Os_F0593,OsFbox244, Os_F0497,OsFbox245, Os_F0037,OsFbox246, Os_F0004,OsFbox247, Os_F0660,OsTLP3, OsTLP7, OsFbox240, Os_F0401,OsFbox249, Os_F0030,OsFbox250, Os_F0011,OsFbox251, Os_F0085,OsFbox252, Os_F0066,OsFbox253, Os_F0052,OsFbox254, Os_F0290,OsFbox255, Os_F0067,OsFbox256, Os_F0111,OsFbox257, Os_F0400,OsFbox258, Os_F0658,OsFbox178, Os_F0705,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,OsFbox261, Os_F0604,OsFbox262, Os_F0703,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,OsFbox266, Os_F0434,OsTLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,OsFbox268, Os_F0080,OsFbox269, Os_F0444,OsFbox270, Os_F0454,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,OsFbox275, Os_F0483,OsFbox276, Os_F0412,OsFbox277, Os_F0150,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,OsFbox183, Fbox183, Os_F0203, F-box119,OsFbox182, Os_F0223, F-box118,OsFbox279, Os_F0100,OsFbox280, Os_F0260,OsFbox281, Os_F0379,OsFbox283, Os_F0368,OsFbox284, Os_F0301,OsFbox285, Os_F0166,OsFbox286, Os_F0619,OsFbox287, Os_F0750,OsFbox288, Os_F0622,OsFbox289, Os_F0510,OsFbox290, Os_F0343,OsFbox292, Os_F0618,OsFbox293, Os_F0585,OsFbox294, Os_F0333,OsFbox295, Os_F0299,OsFbox296, Os_F0612,OsFbox297, Os_F0442,OsFbox298, Os_F0486,OsFbox299, Os_F0015,OsFbox300, Os_F0003,OsFbox301, Os_F0013,OsFbox302, Os_F0143,OsFbox303, Os_F0405,OsFbox305, Os_F0041,OsFbox306, Os_F0305,OsFbox307, Os_F0034,OsFbox308, Os_F0081,OsFbox309, Os_F0312,OsFbox310, Os_F0057,OsFbox311, Os_F0115,OsFbox313, Os_F0104,OsFbox354, Os_F0275,OsFbox312, Os_F0546,OsFbox315, Os_F0369,OsFbox317, Os_F0038,OsFbox318, Os_F0416,OsFbox319, Os_F0429,OsFbox320, Os_F0613,OsFBX234, OsFbox369, Os_F0191,OsFbox323, Os_F0105,OsFbox324, Os_F0220,OsFbox326, Os_F0327,OsFbox327, Os_F0126,OsFbox328, Os_F0254,OsFbox329, Os_F0529,OsFbox330, Os_F0521,OsFbox331, Os_F0273,OsFbox332, Os_F0267,OsFbox333, Os_F0159,OsFbox334, Os_F0361,OsFbox335, Os_F0487,OsFbox336, Os_F0293,OsFbox337, Os_F0302,OsFbox338, Os_F0537,OsFbox339, Os_F0636,OsFbox340, Os_F0124,OsFbox343, Os_F0141,OsFbox342, Os_F0418,OsFbox344, Os_F0183,OsFbox345, Os_F0495,OsFbox346, Os_F0078,OsFbox347, Os_F0072,OsFbox348, Os_F0035,OsFbox349, Os_F0252,OsFbox350, Os_F0212,OsFbox351, Os_F0298,OsFbox352, Os_F0525,OsFbox353, Os_F0501,OsFbox355, Os_F0349,OsFbox356, Os_F0118,OsFbox357, Os_F0033,OsFbox358, Os_F0098,OsFbox359, Os_F0431,OsFbox360, Os_F0235,OsFbox361, Os_F0171,OsFbox362, Os_F0439,OsFbox363, Os_F0353,OsFbox364, Os_F0107,OsFbox365, Os_F0205,OsFbox366, Os_F0784,OsFbox367, Os_F0432,OsFbox368, Os_F0425,OsFbox370, Os_F0625,OsFbox371, Os_F0357,OsTLP11, OsTLP10, OsFbox278, Os_F0631,OsFbox372, Os_F0371,OsFbox377, Os_F0465,OsFbox378, Os_F0217,OsFbox379, Os_F0261,OsFbox373, Os_F0163,OsFbox375, Os_F0062,OsFbox376, Os_F0063,OsFbox380, Os_F0423,OsFbox384, Os_F0579,OsFbox381, Os_F0656,OsFbox382, Os_F0731,OsFbox383, Os_F0702,OsFbox385, Os_F0148,OsFbox386, Os_F0523,OsFbox387, Os_F0534,OsFbox388, Os_F0605,OsFbox389, Os_F0673,OsFbox341, Fbox341, Os_F0215,OsFbox374, Os_F0598,OsFbox456, Fbox456, Os_F0543,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,OsFbox217, Os_F0121, MOF, OsMOF,OsFbox390, Os_F0759,OsFbox391, Os_F0082,OsFbox392, Os_F0313,OsFbox393, Os_F0462,OsFbox394, Os_F0722,OsFbox395, Os_F0032,OsFbox397, Os_F0108,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,OsTLP7, OsTLP11, OsFbox398, Os_F0421,OsFbox399, Os_F0281,OsFbox400, Os_F0541,OsFbox408, Os_F0490,OsFbox401, Os_F0042,OsFbox403, Os_F0338,OsFbox404, Os_F0566,OsFbox405, Os_F0623,OsFbox406, Os_F0075,OsFbox407, Os_F0406,OsFbox409, Os_F0265,OsFbox410, Os_F0192,OsFbox411, Os_F0280,OsFbox413, Os_F0321,OsFbox414, Os_F0654,OsFbox415, Os_F0498,OsFbox416, Os_F0464,OsFbox417, Os_F0682,OsFbox418, Os_F0453,OsFbox420, Os_F0206,OsFbox421, Os_F0249,OsFbox423, Os_F0386,OsFbox422, Os_F0246,OsFbox424, Os_F0348,OsFbox425, Os_F0168,OsFbox426, Os_F0184,OsFbox427, Os_F0221,OsFbox428, Os_F0440,OsFbox429, Os_F0367,OsFbox430, Os_F0456,OsFbox431, Os_F0614,OsFbox432, Os_F0694,OsFbox433, Os_F0239,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,OsFbox435, Os_F0317,OsFbox436, Os_F0146,OsFbox437, Os_F0277,OsFbox438, Os_F0427,OsFbox439, Os_F0320,OsFbox440, Os_F0542,OsFbox441, Os_F0010,OsFbox444, Os_F0648,OsFbox445, Os_F0550,OsFbox447, Os_F0225,OsFbox446, Os_F0095,OsFbox448, Os_F0428,OsFbox449, Os_F0345,OsFbox450, Os_F0185,OsFbox452, Os_F0193,OsFbox451, Os_F0189,OsFbox453, Os_F0339,OsFbox454, Os_F0207,OsFbox455, Os_F0173,OsFbox457, Os_F0575,OsFbox458, Os_F0530,OsFbox459, Os_F0074,OsFbox460, Os_F0200,OsFbox461, Os_F0025,OsFbox462, Os_F0019,OsFbox463, Os_F0230,OsFbox464, Os_F0048,OsFbox465, Os_F0016,OsFbox466, Os_F0587,OsFbox467, Os_F0397,OsFbox468, Os_F0398,OsFbox469, Os_F0272,OsFbox470, Os_F0504,OsFbox471, Os_F0538,OsFbox472, Os_F0599,OsFbox473, Os_F0455,OsFbox474, Os_F0632,OsFbox475, Os_F0634,OsFbox476, Os_F0457,OsFbox477, Os_F0147,OsFbox478, Os_F0354,OsFbox479, Os_F0399,OsFbox480, Os_F0388,OsFbox482, Os_F0167,OsFbox483, Os_F0233,OsFbox484, Os_F0373,OsFbox396, Os_F0578, OsMsr9,OsFbox491, Os_F0580,OsFbox485, Os_F0149,OsFbox486, Os_F0355,OsFbox487, Os_F0548,OsFbox494, Os_F0637,OsFbox495, Os_F0522,OsFbox488, Os_F0562,OsFbox489, Os_F0053,OsFbox490, Os_F0091,OsFbox492, Os_F0175,OsFbox493, Os_F0049,OsFbox496, Os_F0287,OsFbox497, Os_F0433,OsFbox498, Os_F0145,OsFbox499, Os_F0020,OsFbox500, Os_F0186,OsFbox501, Os_F0050,OsFbox412, Fbox412, Os_F0356,OsFbox502, Os_F0060,OsFbox503, Os_F0101,OsFbox504, Os_F0474,OsFbox505, Os_F0638,OsFbox507, Os_F0071,OsFbox508, Os_F0127,OsFbox510, Os_F0210,OsFbox511, Os_F0112,OsFbox512, Os_F0102,OsFbox513, Os_F0131,OsFbox514, Os_F0140,OsFbox515, Os_F0086,OsFbx352, OsFbox516, Os_F0046,OsFbox517, Os_F0054,OsFbox518, Os_F0218,OsFbox520, Os_F0588,OsFbox521, Os_F0526,OsFbox522, Os_F0408,OsFbox523, Os_F0629,OsFbox524, Os_F0561,OsFbox525, Os_F0176,OsFbox526, Os_F0056,OsFbox527, Os_F0059,OsFbox528, Os_F0224,OsFbox534, Os_F0527,OsFbox529, Os_F0667, OsEnS-132,OsFbox509, Os_F0258, OsADF, ADF,OsFbox531, Os_F0024,OsFbox532, Os_F0058,OsFbox533, Os_F0350,OsFbox535, Os_F0208,OsFbox536, Os_F0201,OsFbox537, Os_F0165,OsFbox538, Os_F0470,OsFbox539, Os_F0316,OsFbox481, Os_F0362, FBX322 ,OsFbox540, Os_F0468,OsFbox541, Os_F0409,OsFbox543, Os_F0162,OsFbox544, Os_F0652,OsFbox545, Os_F0535,OsFbox546, Os_F0513,OsFbox547, Os_F0119,OsFbox548, Os_F0160,OsFbox549, Os_F0255,OsFbox550, Os_F0263,OsFbox551, Os_F0073,OsFbox552, Os_F0216,OsFbox555, Os_F0152,OsFbox556, Os_F0154,OsFbox558, Os_F0376,OsFbox559, Os_F0572,OsFbox560, Os_F0582,OsFbox561, Os_F0014,OsFbox564, Os_F0113,OsFbox562, Os_F0002,OsFbox563, Os_F0773,OsFbox565, Os_F0027,OsFbox566, Os_F0279,OsFbox567, Os_F0713,OsTLP6, OsTLP13, OsFbox569, Os_F0461,OsWD40-184, OsFbox571, Os_F0380,OsFbox570, Os_F0219,OsFbox572, Os_F0135,OsFbox577, Os_F0135,OsFbox578, Os_F0136,OsFbox580, Os_F0096,OsFbox582, Os_F0511,OsFbox583, Os_F0363,OsFbox584, Os_F0231,OsFbox585, Os_F0294,OsFbox587, Os_F0097,OsKMD4, OsFbox596, Os_F0436,OsFbox595, Os_F0194,OsFbox597, Os_F0447,OsFbox598, Os_F0672,OsFbox600, Os_F0472,OsFbox602, Os_F0512,OsFbox603, Os_F0489,OsFbox594, Os_F0295, Fbox-1,OsFbox593, Os_F0278, Fbox-3,OsFbox591, Os_F0435, Fbox-5,OsFbox592, Os_F0128, Fbox-4,OsFbox590, Os_F0068, Fbox-6,OsFbox588, Os_F0365, Fbox-10,OsFbox586, Os_F0088, Fbox-13,OsFbox605, Os_F0437,OsFbox606, Os_F0155,OsFbox607, Os_F0045,OsFbox608, Os_F0043,OsFbox616, Os_F0314,OsFbox617, Os_F0505,OsFbox621, Os_F0621,OsFbox622, Os_F0499,OsFbox623, Os_F0502,OsFbox630, Os_F0318,OsFbox636, Os_F0774,OsFbox637, Os_F0061,OsFbox641, Os_F0319,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,OsFbox581, Os_F0649,JMJ710, OsFbox611, Os_F0574,OsFbox610, Os_F0557,OsFbox612, Os_F0268,OsFbox613, Os_F0243,OsFbox614, Os_F0381,OsFbox615, Os_F0099,OsFbox618, Os_F0583,OsFbox620, Os_F0358,OsFbox624, Os_F0226,OsFbox627, Os_F0089,OsFbox628, Os_F0028,OsFbox629, Os_F0564,OsFbox631, Os_F0064,OsFbox632, Os_F0391,OsFbox633, Os_F0413,OsFbox634, Os_F0372,OsFbox635, Os_F0310,OsTLP4, OsTLP14, OsFbox645, Os_F0315,OsFbox648, Os_F0414,OsFbox638, Os_F0021,OsFbox639, Os_F0382,OsFbox640, Os_F0395,OsFbox642, Os_F0213,OsFbox644, Os_F0725,OsFbox646, Os_F0134,OsFbox647, Os_F0466,OsFbox649, Os_F0410,OsFbox650, Os_F0568,OsFbox651, Os_F0018,OsFbox652, Os_F0284,OsFbox654, Os_F0092,OsFbox542, Os_F0480, OsSTA237,OsFbox553, Os_F0250,OsFbox619, Os_F0190, OsSTA265,OsFbox655, Os_F0116,OsFbox657, Os_F0500,OsFbox658, Os_F0589,OsFbox659, Os_F0424,OsFbox660, Os_F0569,OsFbox661, Os_F0665,OsFbox662, Os_F0567,OsFbox663, Os_F0276,OsFbox664, Os_F0592,OsFbox665, Os_F0555,OsFbox666, Os_F0411,OsFbox667, Os_F0594,OsFbox668, Os_F0389,OsFbox669, Os_F0383,OsFbox670, Os_F0419,OsFbox671, Os_F0524,OsFbox673, Os_F0735,OsFbox674, Os_F0164,OsFbox676, Os_F0269,OsFbox677, Os_F0195,OsFbox678, Os_F0417,Os_F0653,Os_F0699,Os_F0798,Os_F0756,Os_F0796,Os_F0659,Os_F0687,Os_F0737,Os_F0670,Os_F0669,Os_F0733,Os_F0738,Os_F0671,Os_F0451,Os_F0695,Os_F0720,Os_F0651,Os_F0797,Os_F0762,Os_F0743,Os_F0478,Os_F0647,Os_F0768,Os_F0676,Os_F0571,Os_F0752,Os_F0404,Os_F0726,Os_F0617,Os_F0029,Os_F0724,Os_F0729,Os_F0708,Os_F0297,Os_F0007,Os_F0283,Os_F0782,Os_F0741,Os_F0240,Os_F0559,Os_F0746,Os_F0766,Os_F0697,Os_F0663,Os_F0764,Os_F0606,Os_F0199,Os_F0586,Os_F0790,OsFbox144, Os_F0237,Os_F0715,Os_F0710,Os_F0601,Os_F0488,Os_F0662,Os_F0783,Os_F0711,Os_F0772,Os_F0627,Os_F0780, OsFBX9,Os_F0767, OsTIR1,Os_F0785, OsEnS-103,Os_F0723,Os_F0684,Os_F0742,Os_F0253,Os_F0690, Fbox-12-pseuso,Os_F0778,Os_F0031,Os_F0758,Os_F0794, OsFBDUF48, FBDUF48, PEG3,OsFbox625, Os_F0458,OsFbox653, Os_F0172,Os_F0700,Os_F0799,Os_F0776,Os_F0769,OsFbox506, Os_F0596,Os_F0761, Fbox-7,Os_F0247,Os_F0138,OsFbox282, Os_F0643,Os_F0732,OsFbox672, Os_F0707,Os_F0757,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,Os_F0257, Fbox-2,Os_F0739, OsFBX2,Os_F0664,Os_F0640,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,OsFbox010, OsFbox10, Os_F0156, OsFBX6,OsFbox011, OsFbox11, Os_F0196, OsFBX7,OsFbox025, OsFbox25, Os_F0325,Os_F0698,Os_F0661,Os_F0581,Os_F0701, OsAFB6, AFB6,Os_F0344,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,Os_F0686,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,OsFbox007, OsFbox7, Os_F0351,Os_F0650,Os_F0789,Os_F0696,Os_F0689,OsFbox589, Os_F0137, Fbox-8,OsFbox291, Os_F0516,Os_F0779,OsFbox568, Os_F0335,Os_F0709,Os_F0680,OsFbox443, Os_F0084, OsSTA212,Os_F0736,Os_F0763,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3
38655	19126682	Xu G., Ma H., Nei M., Kong H.	Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.	Proc. Natl. Acad. Sci. U.S.A.	106(3)	835-40	2009	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SAF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FKF1,_,_,LC4,_,_,_,_,_,_,_,ZTL1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,APO1,_,_,_,_,_,_,_,_,EP3,ZTL2,_,_,_,_,_,_,_,_,_,_,_,_,D3,_,_,_,_,_	OsFbox221, Os_F0036,OsFBX283, OsKIX_6, OsFbox434, Os_F0157,Os_F0711,OsFbox212, Os_F0238,OsFbox188, Os_F0182,OsFbox520, Os_F0588,OsFbox205, Os_F0044,OsFbox201, Os_F0552,OsFbox165, Os_F0229,OsFbox425, Os_F0168,OsFbox558, Os_F0376,Os_F0685,OsFbox625, Os_F0458,OsFbox296, Os_F0612,OsFbox418, Os_F0453,OsFbox573,,Os_F0662,OsFBX270, OsKIX_5, OsFbox419, Os_F0547, OsEnS-118,OsFbox463, Os_F0230,OsFbox521, Os_F0526,OsFbox555, Os_F0152,Os_F0737,OsFbox542, Os_F0480, OsSTA237,,OsFbox100,OsFBX289, OsKIX_7, OsFbox442, Os_F0407, OsEnS-121,Os_F0684,Os_F0783,OsFbox561, Os_F0014,OsFbox318, Os_F0416,OsFbox502, Os_F0060,OsFbox526, Os_F0056,OsFbox653, Os_F0172,OsFbox412, Fbox412, Os_F0356,OsFbox386, Os_F0523,OsFbox583, Os_F0363,OsFbox549, Os_F0255,,OsFbox279, Os_F0100,OsFbox535, Os_F0208,OsFbox467, Os_F0397,OsFbox579, Os_F0334,OsFbox566, Os_F0279,OsFbox567, Os_F0713,OsFbox565, Os_F0027,OsFbox590, Os_F0068, Fbox-6,OsFbox673, Os_F0735,OsFbox664, Os_F0592,OsFbox602, Os_F0512,OsFbox517, Os_F0054,OsFbox666, Os_F0411,Os_F0782,Os_F0741,OsFbox396, Os_F0578, OsMsr9,Os_F0283,OsFbox341, Fbox341, Os_F0215,OsFbox670, Os_F0419,Os_F0488,OsFbox015, OsFbox15, Os_F0481, OsFBX12,Os_F0297,OsFbox377, Os_F0465,OsFbox660, Os_F0569,OsFbox578, Os_F0136,OsFbox503, Os_F0101,Os_F0734,Os_F0668,OsFbox667, Os_F0594,OsFbox604, Os_F0232,Os_F0720,Os_F0798,OsFbox002, OsFbox2,OsFbox440, Os_F0542,OsFbox484, Os_F0373,Os_F0448,Os_F0627,OsFbox595, Os_F0194,OsFbox614, Os_F0381,Os_F0772,OsFbox676, Os_F0269,Os_F0738,OsFbox669, Os_F0383,OsFbox675, Os_F0744,OsFbox598, Os_F0672,OsFbox025, OsFbox25, Os_F0325,OsFbox537, Os_F0165,OsFbox291, Os_F0516,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,OsFbox531, Os_F0024,OsFbox547, Os_F0119,OsFbox192, Os_F0688,OsFbox678, Os_F0417,OsTIR1, TIR1, OsFbox248, Os_F0717,OsFbox585, Os_F0294,,OsFbox677, Os_F0195,OsFbox658, Os_F0589,OsFbox178, Os_F0705,OsFbox277, Os_F0150,Os_F0785, OsEnS-103,Os_F0723,,OsFbox508, Os_F0127,OsFbox011, OsFbox11, Os_F0196, OsFBX7,OsFbox482, Os_F0167,OsFbox557, Fbox557, Os_F0256,OsFbox572, Os_F0135,OsFbox479, Os_F0399,OsFbox560, Os_F0582,OsFbox522, Os_F0408,OsFbox003, OsFbox3, Os_F0209, OsFBX3,OsFbox005, OsFbox5, Os_F0747, OsFBX4,OsFbox004, OsFbox4, Os_F0387,OsFbox012, OsFbox12, Os_F0539, OsFBX8,OsFbox008, OsFbox8, Os_F0329,OsFbox007, OsFbox7, Os_F0351,OsFbox009, OsFbox9, Os_F0616,OsFbox017, OsFbox17, Os_F0392,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,OsFbox021, OsFbox21, Os_F0117,OsFbox022, OsFbox22, Os_F0366,OsFbox024, OsFbox24, Os_F0087,OsFbox027, OsFbox27, Os_F0595,OsFbox001, OsFbox1, Os_F0615, OsFBX1,OsFbox013, OsFbox13, Os_F0590, OsFBX10,OsFbox014, OsFbox14, Os_F0467, OsFBX11,OsFbox016, OsFbox16, Os_F0471, OsFBX13,OsTLP9, OsTLP9a, OsTLP9b, OsTLP9c, OsTLP1, OsFbox034, OsFbox34, Os_F0675,OsFbox028, OsFbox28, Os_F0158,OsFbox032, OsFbox32, Os_F0271,OsTLP12, OsTLP2, OsFbox039, OsFbox39, Os_F0683,OsFbox029, OsFbox29, Os_F0384,OsFbox031, OsFbox31, Os_F0326,OsFbox030, OsFbox30, Os_F0577,OsFbox035, OsFbox35, Os_F0556,OsFbox036, OsFbox36, Os_F0051,OsFbox037, OsFbox37, Os_F0332,OsFbox038, OsFbox38, Os_F0519,OsFbox041, OsFbox41, Os_F0730,OsFbox042, OsFbox42, Os_F0608,OsFbox043, OsFbox43, Os_F0563,OsFbox044, OsFbox44, Os_F0491,OsFbox045, OsFbox45, Os_F0307,OsFbox046, OsFbox46, Os_F0609,OsFbox047, OsFbox47, Os_F0754,OsFbox048, OsFbox48, Os_F0202,OsFbox049, OsFbox49, Os_F0364,OsTLP5, OsTLP3, OsFbox050, OsFbox50, Os_F0396,OsFbox051, OsFbox51, Os_F0330,OsFbox052, OsFbox52, Os_F0755,OsFbox054, OsFbox54, Os_F0420,OsFbox055, OsFbox55, Os_F0463,OsFbox056, OsFbox56, Os_F0469,OsFbox057, OsFbox57, Os_F0570,OsFbox058, OsFbox58, Os_F0591,OsFbox059, OsFbox59, Os_F0692,OsFbox060, OsFbox60, Os_F0125,OsFbox061, OsFbox61, Os_F0473,OsFbox062, OsFbox62, Os_F0282,OsFbox063, OsFbox63, Os_F0090,OsFbox064, OsFbox64, Os_F0285,OsFbox065, OsFbox65, Os_F0311,OsFbox068, OsFbox68, Os_F0346,OsFbox069, OsFbox69, Os_F0227,OsFbox070, OsFbox70, Os_F0151,OsFbox071, OsFbox71, Os_F0306,Os_F0661,OsFbox073, OsFbox73, Os_F0359,OsKMD1, OsFbox074, OsFbox74, Os_F0323,OsFbox075, OsFbox75, Os_F0514,OsFbox077, OsFbox77, Os_F0558,OsFbox078, OsFbox78, Os_F0445,OsFbox079, OsFbox79, Os_F0641,OsFbox080, OsFbox80, Os_F0533,OsFbox081, OsFbox81, Os_F0375,OsFbox082, OsFbox82, Os_F0509,OsFbox083, OsFbox83, Os_F0360,OsFbox084, OsFbox84, Os_F0452,OsFbox086, OsFbox86, Os_F0482,OsFbox087, OsFbox87, Os_F0536,OsFbox088, OsFbox88, Os_F0475,OsFbox089, OsFbox89, Os_F0377,OsFbox091, OsFbox91, Os_F0517,OsFbox092, OsFbox92, Os_F0704,OsFbox093, OsFbox93, Os_F0270,OsFbox094, OsFbox94, Os_F0336,OsKMD3, OsFbox096, OsFbox96, Os_F0169,OsFbox023, OsFbox23, Os_F0211, OsSTA20,OsFbox095, OsFbox95, Os_F0274, OsSTA64,SaF, OsFbox019, OsFbox19, Os_F0070,OsFbox097, OsFbox97, Os_F0402,OsFbox098, OsFbox98, Os_F0174,OsFbox099, OsFbox99, Os_F0180,OsFbox102, Os_F0177,OsFbox103, Os_F0039,MAIF1, OsFbox104, Os_F0528,OsTLP8, OsTLP8a, OsTLP8b, OsTLP8c, OsTLP8d, OsTLP5, OsFbox107, Os_F0446,OsFbox106, Os_F0496,OsFbox108, Os_F0236,OsFbox125, Os_F0403,OsFbox109, Os_F0628,OsFbox111, Os_F0005,OsFbox112, Os_F0657,OsFbox114, Os_F0103,OsFbox115, Os_F0639,OsFbox116, Os_F0291,OsFbox119, Os_F0693,OsFbox118, Os_F0460,OsFbox120, Os_F0441,OsFbox122, Os_F0288,OsFbox123, Os_F0289,OsFbox124, Os_F0262,OsFbox128, Os_F0506,OsFbox085, OsFbox85, Os_F0602,OsFbox127, Os_F0532,OsFBK12, OsFbox130, Os_F0642,OsFbox131, Os_F0292,OsFbox135, Os_F0341,OsFbox137, Os_F0544,OsFbox136, Os_F0187,OsFbox134, Os_F0443,OsFbox133, Os_F0449,OsFbox132, Os_F0228,OsFbox138, Os_F0340,OsTLP14, OsTLP6, OsFbox139, Os_F0681,OsFbox140, Os_F0065,OsFbox141, Os_F0122,OsFbox142, Os_F0023,OsFbox129, Os_F0178,OsFbox143, Os_F0129,OsFbox152, Os_F0251,OsFbox158, Os_F0008,OsFbox159, Os_F0006,OsFbox160, Os_F0017,OsFbox144, Os_F0237,OsFbox145, Os_F0026,OsFbox146, Os_F0179,OsFbox147, Os_F0266,OsFbox148, Os_F0426,JMJ711, OsFbox149, Os_F0347,OsFbox150, Os_F0123,OsFbox151, Os_F0222,OsFbox155, Os_F0503,OsFbox234, Os_F0170,OsFbox157, Os_F0188,OsFbox161, Os_F0076,OsFbox126, Os_F0788,OsFbox162, Os_F0012,OsFbox450, Os_F0185,OsFbox164, Os_F0040,OsFbox167, Os_F0244,OsFbox168, Os_F0132,OsFbox169, Os_F0378,OsFbox170, Os_F0296,OsFbox171, Os_F0153,OsFbox172, Os_F0303,OsFbox173, Os_F0094,OsFbox174, Os_F0714,OsFbox175, Os_F0633,OsFbox177, Os_F0120,OsFbox179, Os_F0161,OsFbox180, Os_F0342,OsFbox181, Os_F0655,OsFbox184, Os_F0197,OsFbox185, Os_F0197,OsFbox186, Os_F0322,OsFbox187, Os_F0245,OsFbox189, Os_F0133,OsFbox190, Os_F0204,OsFbox191, Os_F0109,OsFbox193, Os_F0515,OsFbox237, Os_F0241,OsFbox194, Os_F0635,OsFbox195, Os_F0144,OsFbox197, Os_F0620,OsFbox198, Os_F0644,OsFbox199, Os_F0630,OsFbox200, Os_F0645,OsFbox166, Os_F0438,OsFbox156, Os_F0603,OsFbox202, Os_F0749,OsFbox203, Os_F0600,OsFbox204, Os_F0139,OsDRF1, OsFbox209, Os_F0001,OsFbox207, Os_F0611,OsFbox208, Os_F0775,OsFbox211, Os_F0331,OsFbox213, Os_F0422,OsFbox214, Os_F0430,OsFbox215, Os_F0110,OsFbox216, Os_F0328,OsFbox218, Os_F0597,OsFbox219, Os_F0485,OsFbox220, Os_F0518,OsFbox222, Os_F0047,OsFbox224, Os_F0093,OsFbox223, Os_F0055,OsFbox226, Os_F0022,OsFbox227, Os_F0286,OsFbox228, Os_F0553,OsFbox230, Os_F0308,OsFbox231, Os_F0565,OsFbox232, Os_F0576,OsWD40-110, OsFbox233, Os_F0069,OsFbox235, Os_F0248,OsFbox236, Os_F0264,OsFbox238, Os_F0385,OsFbox239, Os_F0304,OsFbox243, Os_F0545,OsFbox241, Os_F0593,OsFbox244, Os_F0497,OsFbox245, Os_F0037,OsFbox246, Os_F0004,OsFbox247, Os_F0660,OsTLP3, OsTLP7, OsFbox240, Os_F0401,OsFbox249, Os_F0030,OsFbox250, Os_F0011,OsFbox251, Os_F0085,OsFbox252, Os_F0066,OsFbox254, Os_F0290,OsFbox255, Os_F0067,OsFbox256, Os_F0111,OsFbox258, Os_F0658,OsTLP1, OsTLP1a, OsTLP1b, OsTLP1c, OsTLP8, OsFbox259, Os_F0415,OsFbox261, Os_F0604,OsFbox263, Os_F0721,OsFbox264, Os_F0554,OsFbox265, Os_F0584,OsFbox266, Os_F0434,OsTLP10, OsTLP10a, OsTLP10b, OsTLP9, OsFbox267, Os_F0560,OsFbox268, Os_F0080,OsFbox269, Os_F0444,OsFbox270, Os_F0454,OsFbox271, Os_F0666,OsFbox272, Os_F0626,OsFbox273, Os_F0573,OsFbox274, Os_F0450,OsFbox275, Os_F0483,OsFbox276, Os_F0412,OsFbox183, Fbox183, Os_F0203, F-box119,OsFbox182, Os_F0223, F-box118,OsFbox280, Os_F0260,OsFbox283, Os_F0368,OsFbox284, Os_F0301,OsFbox285, Os_F0166,OsFbox286, Os_F0619,OsFbox287, Os_F0750,OsFbox288, Os_F0622,OsFbox655, Os_F0116,OsFbox289, Os_F0510,OsFbox290, Os_F0343,OsFbox292, Os_F0618,OsFbox293, Os_F0585,OsFbox294, Os_F0333,OsFbox295, Os_F0299,OsFbox586, Os_F0088, Fbox-13,OsFbox297, Os_F0442,OsFbox298, Os_F0486,OsFbox299, Os_F0015,OsFbox300, Os_F0003,OsFbox301, Os_F0013,OsFbox302, Os_F0143,OsFbox303, Os_F0405,OsFbox305, Os_F0041,OsFbox306, Os_F0305,OsFbox307, Os_F0034,OsFbox308, Os_F0081,OsFbox309, Os_F0312,OsFbox310, Os_F0057,OsFbox311, Os_F0115,OsFbox313, Os_F0104,OsFbox354, Os_F0275,OsFbox312, Os_F0546,OsFbox315, Os_F0369,OsFbox317, Os_F0038,OsFbox319, Os_F0429,OsFbox320, Os_F0613,OsFbox282, Os_F0643,OsFbox322, Os_F0520,OsFbox323, Os_F0105,OsFbox324, Os_F0220,OsFbox326, Os_F0327,OsFbox327, Os_F0126,OsFbox328, Os_F0254,OsFbox329, Os_F0529,OsFbox330, Os_F0521,OsFbox331, Os_F0273,OsFbox332, Os_F0267,OsFbox333, Os_F0159,OsFbox334, Os_F0361,OsFbox335, Os_F0487,OsFbox336, Os_F0293,OsFbox337, Os_F0302,OsFbox338, Os_F0537,OsFbox339, Os_F0636,OsFbox340, Os_F0124,OsFbox343, Os_F0141,OsFbox342, Os_F0418,OsFbox344, Os_F0183,OsFbox345, Os_F0495,OsFbox346, Os_F0078,OsFbox347, Os_F0072,OsFbox348, Os_F0035,OsFbox349, Os_F0252,OsFbox350, Os_F0212,OsFbox351, Os_F0298,OsFbox352, Os_F0525,OsFbox353, Os_F0501,OsFbox355, Os_F0349,OsFbox356, Os_F0118,OsFbox357, Os_F0033,OsFbox358, Os_F0098,OsFbox359, Os_F0431,OsFbox360, Os_F0235,OsFbox361, Os_F0171,OsFbox362, Os_F0439,OsFbox363, Os_F0353,OsFbox364, Os_F0107,OsFbox365, Os_F0205,OsFbox366, Os_F0784,OsFbox367, Os_F0432,OsFbox368, Os_F0425,OsFbox370, Os_F0625,OsFbox371, Os_F0357,OsFBX234, OsFbox369, Os_F0191,OsTLP11, OsTLP10, OsFbox278, Os_F0631,OsFbox372, Os_F0371,OsFbox378, Os_F0217,OsFbox379, Os_F0261,OsFbox373, Os_F0163,OsFbox376, Os_F0063,OsFbox380, Os_F0423,OsFbox384, Os_F0579,OsFbox382, Os_F0731,OsFbox383, Os_F0702,OsFbox385, Os_F0148,OsFbox387, Os_F0534,OsFbox388, Os_F0605,OsFbox389, Os_F0673,OsFbox374, Os_F0598,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,OsFbox217, Os_F0121, MOF, OsMOF,OsFbox443, Os_F0084, OsSTA212,OsFbox391, Os_F0082,OsFbox392, Os_F0313,OsFbox393, Os_F0462,OsFbox394, Os_F0722,OsFbox395, Os_F0032,OsFbox397, Os_F0108,OsFbox456, Fbox456, Os_F0543,OsTLP2, OsTLP2a, OsTLP2b, OsTLP12, OsFbox402, Os_F0479,OsTLP7, OsTLP11, OsFbox398, Os_F0421,OsFbox399, Os_F0281,OsFbox400, Os_F0541,OsFbox408, Os_F0490,OsFbox401, Os_F0042,OsFbox403, Os_F0338,OsFbox404, Os_F0566,OsFbox405, Os_F0623,OsFbox406, Os_F0075,OsFbox407, Os_F0406,OsFbox409, Os_F0265,OsFbox410, Os_F0192,OsFbox411, Os_F0280,OsFbox413, Os_F0321,OsFbox414, Os_F0654,OsFbox415, Os_F0498,OsFbox416, Os_F0464,OsFbox417, Os_F0682,OsFbox529, Os_F0667, OsEnS-132,OsFbox420, Os_F0206,OsFbox421, Os_F0249,OsFbox423, Os_F0386,OsFbox422, Os_F0246,OsFbox424, Os_F0348,OsFbox426, Os_F0184,OsFbox427, Os_F0221,OsFbox428, Os_F0440,OsFbox429, Os_F0367,OsFbox430, Os_F0456,OsFbox431, Os_F0614,OsFbox432, Os_F0694,OsFbox433, Os_F0239,OsFbox435, Os_F0317,OsFbox436, Os_F0146,OsFbox437, Os_F0277,OsFbox438, Os_F0427,OsFbox439, Os_F0320,OsFbox475, Os_F0634,OsFbox441, Os_F0010,OsFbox444, Os_F0648,OsFbox445, Os_F0550,OsFbox446, Os_F0095,OsFbox448, Os_F0428,OsFbox449, Os_F0345,OsFbox452, Os_F0193,OsFbox453, Os_F0339,OsFbox455, Os_F0173,OsFbox457, Os_F0575,OsFbox458, Os_F0530,OsFbox460, Os_F0200,OsFbox461, Os_F0025,OsFbox462, Os_F0019,OsFbox464, Os_F0048,OsFbox465, Os_F0016,OsFbox466, Os_F0587,OsFbox468, Os_F0398,OsFbox469, Os_F0272,OsFbox470, Os_F0504,OsFbox472, Os_F0599,OsFbox473, Os_F0455,OsFbox474, Os_F0632,OsFbox476, Os_F0457,OsFbox477, Os_F0147,OsFbox478, Os_F0354,OsFbox480, Os_F0388,OsFbox483, Os_F0233,OsFbox491, Os_F0580,OsFbox485, Os_F0149,OsFbox486, Os_F0355,OsFbox487, Os_F0548,OsFbox494, Os_F0637,OsFbox495, Os_F0522,OsFbox488, Os_F0562,OsFbox489, Os_F0053,OsFbox490, Os_F0091,OsFbox492, Os_F0175,OsFbox493, Os_F0049,OsFbox496, Os_F0287,OsFbox497, Os_F0433,OsFbox498, Os_F0145,OsFbox499, Os_F0020,OsFbox500, Os_F0186,OsFbox501, Os_F0050,OsFbox196, Os_F0324,OsFbox513, Os_F0131,OsFbox514, Os_F0140,OsFbox515, Os_F0086,OsFbx352, OsFbox516, Os_F0046,OsFbox518, Os_F0218,OsFbox523, Os_F0629,,OsFbox525, Os_F0176,OsFbox527, Os_F0059,OsFbox528, Os_F0224,OsFbox534, Os_F0527,OsFbox509, Os_F0258, OsADF, ADF,OsFbox532, Os_F0058,OsFbox533, Os_F0350,OsFbox536, Os_F0201,OsFbox538, Os_F0470,OsFbox481, Os_F0362, FBX322 ,OsFbox541, Os_F0409,OsFbox544, Os_F0652,OsFbox545, Os_F0535,OsFbox546, Os_F0513,OsFbox548, Os_F0160,OsFbox550, Os_F0263,OsFbox559, Os_F0572,OsFbox564, Os_F0113,OsFbox562, Os_F0002,OsFbox563, Os_F0773,OsFbox568, Os_F0335,OsTLP6, OsTLP13, OsFbox569, Os_F0461,OsFbox570, Os_F0219,OsFbox577, Os_F0135,OsFbox582, Os_F0511,OsFbox381, Os_F0656,OsFbox587, Os_F0097,OsKMD4, OsFbox596, Os_F0436,OsFbox597, Os_F0447,OsFbox593, Os_F0278, Fbox-3,OsFbox592, Os_F0128, Fbox-4,OsFbox375, Os_F0062,OsFbox603, Os_F0489,OsFbox605, Os_F0437,OsFbox606, Os_F0155,OsFbox607, Os_F0045,OsFbox608, Os_F0043,OsFbox616, Os_F0314,OsFbox617, Os_F0505,OsFbox621, Os_F0621,OsFbox622, Os_F0499,OsFbox623, Os_F0502,OsFbox630, Os_F0318,OsFbox636, Os_F0774,OsFbox637, Os_F0061,OsFbox641, Os_F0319,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,OsFbox610, Os_F0557,OsFbox612, Os_F0268,OsFbox613, Os_F0243,,,OsFbox615, Os_F0099,OsFbox618, Os_F0583,OsFbox620, Os_F0358,OsFbox624, Os_F0226,OsFbox627, Os_F0089,OsFbox628, Os_F0028,OsFbox629, Os_F0564,OsFbox631, Os_F0064,OsFbox632, Os_F0391,OsFbox633, Os_F0413,OsFbox634, Os_F0372,OsFbox635, Os_F0310,OsTLP4, OsTLP14, OsFbox645, Os_F0315,OsFbox638, Os_F0021,OsFbox639, Os_F0382,OsFbox640, Os_F0395,OsFbox646, Os_F0134,OsFbox651, Os_F0018,OsFbox654, Os_F0092,OsFbox553, Os_F0250,OsFbox619, Os_F0190, OsSTA265,OsFbox657, Os_F0500,OsFbox659, Os_F0424,OsFbox661, Os_F0665,OsFbox663, Os_F0276,OsFbox665, Os_F0555,OsFbox671, Os_F0524,OsFbox674, Os_F0164,Os_F0653,Os_F0699,Os_F0756,Os_F0659,Os_F0344,Os_F0669,Os_F0670,,Os_F0671,Os_F0451,Os_F0695,,Os_F0571,Os_F0724,Os_F0729,Os_F0708,Os_F0007,Os_F0689,Os_F0138,OsFbox154, Os_F0130,Os_F0780, OsFBX9,,,Os_F0769,,,,,,,,,,,,,,,,OsFbox506, Os_F0596,Os_F0247,OsFbox210,OsWD40-184, OsFbox571, Os_F0380,OsIRL6 ,Os_F0732,OsFbox672, Os_F0707,OsFbox067, OsFbox67, Os_F0477,OsFbox121, Os_F0352,OsFbox117, Os_F0679,OsFbox229, Os_F0493,OsFbox519,,OsFbox113, Os_F0234,,,,,,,,,,OsFbox574,OsFbox575,OsFbox576,,,,OsFbox626,OsFbox656,OsFbox110, Os_F0551,OsFbox105, Os_F0549,OsFbox101, Os_F0678,OsFbox609, Os_F0370, OsFKF1,OsRALyase, OsFbox090, OsFbox90, Os_F0337,Os_F0726,OsFbox053, OsFbox53, Os_F0309, OsLC4,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,,Os_F0752,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsFbox010, OsFbox10, Os_F0156, OsFBX6,OsFbox040, OsFbox40, Os_F0476,OsFbox584, Os_F0231,OsZTL1, OsFbox066, OsFbox66, Os_F0484,OsFbox026, OsFbox26, Os_F0242,Os_F0698,OsFbox580, Os_F0096,OsFbox163, Os_F0009,OsFbox540, Os_F0468,OsFbox511, Os_F0112,OsFbox524, Os_F0561,OsFbox668, Os_F0389,,,OsFbox539, Os_F0316,,OsFbox505, Os_F0638,OsFbox018, OsFbox18, Os_F0259,OsFbox459, Os_F0074,Os_F0796,Os_F0776,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsFbox454, Os_F0207,OsFbox451, Os_F0189,OsFbox257, Os_F0400,,OsFbox253, Os_F0052,OsFbox591, Os_F0435, Fbox-5,JMJ710, OsFbox611, Os_F0574,Os_F0581,Os_F0739, OsFBX2,Os_F0617,OsFbox652, Os_F0284,OsFbox543, Os_F0162,OsFbox242, Os_F0706,OsFbox647, Os_F0466,Os_F0029,OsFbox650, Os_F0568,OsFbox649, Os_F0410,OsFbox644, Os_F0725,OsFbox642, Os_F0213,IBF1, OsFBX310, FBX310,OsFbox662, Os_F0567,OsFbox512, Os_F0102,OsFbox471, Os_F0538,OsFbox020, OsFbox20, Os_F0674,OsFbox599,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,OsFbox589, Os_F0137, Fbox-8,OsFbox648, Os_F0414,OsFbox281, Os_F0379,OsFbox556, Os_F0154,OsFbox504, Os_F0474,OsFbox551, Os_F0073,OsFbox510, Os_F0210,OsFbox390, Os_F0759,EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,OsFbox447, Os_F0225,OsFbox581, Os_F0649,OsFbox594, Os_F0295, Fbox-1,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,,,,Fbox-9-pseudo, Os_F0394,OsFbox507, Os_F0071,Os_F0767, OsTIR1,Os_F0404,OsFbox552, Os_F0216,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,Os_F0794, OsFBDUF48, FBDUF48, PEG3,,OsFbox588, Os_F0365, Fbox-10,OsFbox225, Os_F0540,OsFbox262, Os_F0703
38656	17284833	Takai R., Kaneda T., Isogai A., Takayama S., Fang-Sik Che	A new method of defense response analysis using a transient expression system in rice protoplasts.	Biosci. Biotechnol. Biochem.	71(2)	590-3	2007	PR10A,CHT1,WRKY70	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsWRKY70
38657	16272430	Ishikawa R., Tamaki S., Yokoi S., Inagaki N., Shinomura T., Takano M., Shimamoto K.	Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.	Plant Cell	17(12)	3326-36	2005	RFT1,FTL6,FTL12,FTL5,SE1,HD3A,PHYC,PHYA,FTL4,FTL1,CAB1R,GI,PHYB	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,FT-L 6, OsFTL6, FT-L6,OsFTL12, FT-L11,FT-L 5, OsFTL5, FT-L5,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsPHYC, OsPHYCa, OsPHYCb,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsFT, osFT, FT-L 4, OsFTL4, FT-L4,FTL, FT-L1, OsFTL1, FTL1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,OsGI, Gi, Os-GI,phyB, PHYB1, OsPHYB, OsphyB
38658	11489174	N Sugiyama, T Izawa, T Oikawa, K Shimamoto	Light regulation of circadian clock-controlled gene expression in rice.	Plant J.	26(6)	607-15	2001	CAB1R	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b
38659	0	Akiyama T., Kaku H., Shibuya N.	Purification and Properties of a Basic Endo-l,3-Beta-Glucanase from Rice (Oryza sativa L.)	Plant cell physiology	37(5)	702-705	1996	_	OsPR2, PR2, Gns4, OsGLN2
38660	19236476	Michael A Grillo, Li C., Angela M Fowlkes, Trevor M Briggeman, Zhou A., Douglas W Schemske, Sang T.	Genetic architecture for the adaptive origin of annual wild rice, oryza nivara.	Evolution	63(4)	870-83	2009		
38661	8522180	Y L Lee, P F Chang, K W Yeh, T L Jinn, C C Kung, W C Lin, Y M Chen, C Y Lin	Cloning and characterization of a cDNA encoding an 18.0-kDa class-I low-molecular-weight heat-shock protein from rice.	Gene	165(2)	223-7	1995	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
38662	9784845	D Y Huang, A Y Wang	Purification and characterization of sucrose synthase isozymes from etiolated rice seedlings.	Biochem. Mol. Biol. Int.	46(1)	107-13	1998	RSUS2,RSUS3,RSUS1	sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2
38663	16669782	Kazuko Yamaguchi-Shinozaki, Shinozaki K.	Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses.	Annu Rev Plant Biol	57	781-803	2006	DREB1D,DREB1C,TRAB1,DREB1B,DREB2A,DREB1A	OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
38664	0	Takeda T., Toyofuku K., Matsukura C., Yamaguchi J.	Sugar transporters involved in flowering and grain development of rice	J. Plant Physiol.	158	465-470	2001	SUT3,MST5	OsSUT3(t), OsSUT3, SUC3, OsSUT2,OsMST5
38665	0	NGAMPANYA B., Takeda T., Sonoda Y., Narangajavana J., Ikeda A., Yamaguchi J.	Characterization of OsSUT2 cDNA expressed before flowering stage of rice	RGN	19	49-51	2002	SUT3	OsSUT3(t), OsSUT3, SUC3, OsSUT2
38666	0	Watanabe S., Sakai T., Goto S., Yaginuma T., Hayakawa T., Yamaya T.	Expression of NADH-Dependent Glutamate Synthase in Response to the Supply of Nitrogen in Rice Cells in Suspension Culture	Plant Cell Physiol.	37(7)	1034-1037	1996	GLT1	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1
38667	0	Abdullahi A.S., Soom M.A.M., Ahmad D., Shariff A.R.M.	Characterization of rice (Oryza sativa) evapotranspiration using micro paddy lysimeter and class "A" pan in tropical environments	Aust J Crop Sci	7	650-658	2013		
38668	0	P?rez-Bernal M.a, Salinas D.L.b, Rigo M.D.a	Viability in rice seeds obtained from plants developed in vitro [Viabilidad de semillas de arroz provenientes de plantas obtenidas in vitro]	Acta Agron.	62	114-119	2013		
38669	0	Serrat X.a, Esteban R.a, Pe?as G.a, Catal? M.M.b, Mel? E.a, Messeguer J.a	Direct and reverse pollen-mediated gene flow between GM rice and red rice weed	AoB Plants	5		2013		
38670	0	Rangel P.N., Vianello R.P., Melo A.T.O., Rangel P.H.N., Mendon?a J.A., Brondani C.	Yield QTL analysis of Oryza sativa x O. glumaepatula introgression lines	Pesqui. Agropecu. Bras.	48	280-286	2013		
38671	0	Bianchet P.a, Sangoi L.b, Filho O.K.b, Miquelluti D.J.b, Ferreira M.A.c, Vieira J.c	Single mixed formulations of inoculants with diazotrophic bacteria, under different nitrogen rates on the paddy rice crop [Formula??es simples e mista de inoculantes com bact?rias diazotr?ficas, sob diferentes doses de nitrog?nio na cultura do arroz irrigado]	Semina:Ciencias Agrarias	34	2655-2666	2013		
38672	0	Chauhan B.S.a, Abeysekara A.S.K.b, Kulatunga S.D.b, Madusanka I.U.b	Weed Growth and grain yield, as Affected by Herbicides, in Dry-seeded Rice in Sri Lanka	Journal of Crop Improvement	27	419-429	2013		
38673	24280628	Lakshmanan M.a, Mohanty B.a, Lee D.Y.a b	Identifying essential genes/reactions of the rice photorespiration by in silico model-based analysis	Rice (N Y)	6	20	2013		
38674	0	Khan S.A.a, Shinwari Z.K.a, Ashiq Rabbani M.b	Study of total seed protein pattern of rice (Oryza sativa L.) breeding lines of Pakistan through SDS-PAGE	Pak J Bot	45	871-876	2013		
38675	0	Elec V.a, Quimio C.A.b, Mendoza R.a, Sajise A.G.C.a, Beebout S.E.J.a, Gregorio G.B.a, Singh R.K.a	Maintaining elevated Fe2+ concentration in solution culture for the development of a rapid and repeatable screening technique for iron toxicity tolerance in rice (Oryza sativa L.)	Plant Soil	372	253-264	2013		
38676	0	Ludwig J.a, Moura A.B.b, Gomes C.B.c	Potential of microbiolization of rice seeds with rhizobacteria for root-knot nematode biocontrol [Potencial da microbioliza??o de sementes de arroz com rizobact?rias para o biocontrole do nematoide das galhas]	Trop Plant Pathol	38	264-268	2013		
38677	0	Wankhade S.D.a b, Sanz A.a	Chronic mild salinity affects source leaves physiology and productivity parameters of rice plants (Oryza sativa L., cv. Taipei 309)	Plant Soil	367	663-672	2013		
38678	0	Chauhan B.S., Abugho S.B.	Growth of Echinochloa glabrescens in Response to Rice Cultivar and Density	Journal of Crop Improvement	27	391-405	2013		
38679	0	de Melo Carvalho M.T.a b d, Madari B.E.a, Bastiaans L.b, van Oort P.A.J.b e, Heinemann A.B.a, da Silva M.A.S.a, Nunes Maia A.H.c, Meinke H.b d	Biochar improves fertility of a clay soil in the Brazilian Savannah: Short term effects and impact on rice yield	Journal of Agriculture and Rural Development in the Tropics and Subtropics	114	101-107	2013		
38680	0	Fageria N.K., Knupp A.M.	UPLAND RICE PHENOLOGY AND NUTRIENT UPTAKE IN TROPICAL CLIMATE	J Plant Nutr	36	1-14	2013		
38681	0	Schmidt F.a, Fortes M.A.b, Wesz J.b, Buss G.L.b, de Sousa R.O.c	The impact of water management on iron toxicity in flooded rice [Impacto do manejo da ?gua na toxidez por ferro no arroz irrigado por alagamento]	Rev. Bras. Cienc. Solo	37	1226-1235	2013		
38682	0	Saragih A.A.a, Puteh A.B.a, Ismail M.R.a, Monjurul Alam Mondal M.a b	pollen quality traits of cultivated (Oryza sativa L. Ssp. Indica) and weedy (Oryza sativa var. Nivara) rice to water stress at reproductive stage	Aust J Crop Sci	7	1106-1112	2013		
38683	0	Shahrestani M.R.a, Esmaeili M.A.a, Pirdashti H.a, Abdollahi S.P.b	A survey on the morphological effects of rice promising lines (Oryza sativa L.) In response to the changes in planting density and nitrogen content	Middle East Journal of Scientific Research	16	466-474	2013		
38684	0	Wathugala D.L., Jayakodi T.S.D., Ranagalage A.S., Kumarasinghe H.M.S.	Evaluation of allelopathic potential of Sri Lankan improved rice (Oryza sativa L.) varieties for control of Echinochloa crus-galli	Research on Crops	14	985-994	2013		
38685	23752350	Yuan Y., Xu W., He X., Liu H., Cao S., Qi X., Huang K., Luo Y.	Effects of genetically modified T2A-1 rice on the GI health of rats after 90-day supplement.	Sci Rep	3	1962	2013		
38686	23661564	Wang D., Timmis J.N.	Cytoplasmic organelle DNA preferentially inserts into open chromatin	Genome Biol Evol	5	1060-1064	2013		
38687	0	dos Santos R.S.a b, Kr?ger M.M.b, Pegoraro C.b, Madabula F.P.a b, da Maia L.C.b, Rombaldi C.V.a c, de Oliveira A.C.a b	Transcriptional Regulation of Seven ERFs in Rice Under Oxygen Depletion and Iron Overload Stress	Trop Plant Biol	6	16-25	2013		
38688	0	Faraji F.a, Esfahani M.a, Kavousi M.b, Nahvi M.b, Forghani A.a	Effect of nitrogen fertilizer levels on Fe and protein content, grain breakage and grain yield of rice (Oryza sativa L. Cv. Khazar)	Biharean Biologist	7	25-28	2013		
38689	24783785	Duangsee K.a, Bunnag S.b c d	Influence of nutrient composition and plant growth regulators on callus induction and plant regeneration in glutinous rice (Oryza sativa L.)	Pakistan Journal of Biological Sciences	17	98-103	2013		
38690	0	Anghinoni I.a, de Campos Carmona F.b, Genro Junior S.A.b, Boeni M.b	Potassium fertilization in flooded rice according to soil cation exchange capacity [Aduba??o pot?ssica em arroz irrigado conforme a capacidade de troca cati?nica do solo]	Pesqui. Agropecu. Bras.	48	1481-1488	2013		
38691	0	Fidelis R.R.a, do Nascimento L.C.b, dos Santos M.M.b, Silva G.F.b, Tonello L.P.b, De Oliveira T.C.b	Effect of phosphorus fertilization on physiological quality of rice seeds cultivated in upland [Efeito da aduba??o fosfatada na qualidade fisiol?gica de sementes de arroz cultivadas em terras altas]	Bioscience Journal	29	15-21	2013		
38692	0	Rahim H.A.a, Bhuiyan M.A.R.b, Saad A.c, Azhar M.a, Wickneswari R.c	Identification of virulent pathotypes causing rice blast disease (Magnaporthe oryzae) and study on single nuclear gene inheritance of blast resistance in F2 population derived from pongsu seribu 2 ~ mahshuri	Aust J Crop Sci	7	1597-1605	2013		
38693	0	Cl?ment G.a, Louvel D.b	Rice varietal improvement for Mediterranean France [Am?lioration vari?tale du riz pour la France m?diterran?enne]	Cahiers Agricultures	22	459-465	2013		
38694	0	Reis E.F.a, Borges G.R.a, Da Silva J.G.b, De Oliveira J.P.b	Grain losses in the mechanized harvest of upland rice as a function of speed displacement and reel [Perdas de gr?os na colheita mecanizada do arroz de terras altas em fun??o das velocidades de deslocamento e do molinete]	Comunicata Scientiae	4	12-19	2013		
38695	0	Lee S.T., Huang W.L.	Cytokinin, auxin, and abscisic acid affects sucrose metabolism conduce to de novo shoot organogenesis in rice (Oryza sativa L.) callus	Botanical Studies	54		2013	CIN1,SUT2,PIN1B,SUT1,LEA20,RR21	OSCIN1, OsCIN1,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsSUT1, OsSUT2,OsLEA20, OsLEA1, OsLEA1a,OsRR21, Rrb1, Orr1, OsRR19, OsRRB1, ORR1
38696	0	Zahra A.R.F.a, De Costa D.M.a, De Costa W.A.J.M.b	Identification of differentially-expressed genes in response to salt stress in the salt-tolerant Sri Lankan rice variety At354	Journal of the National Science Foundation of Sri Lanka	41	93-112	2013		
38697	0	Charng Y.C., Liu L.Y.D.	The extent of Ds1 transposon to enrich transcriptomes and proteomes by exonization	Botanical Studies	54		2013		
38698	0	Mannan M.A., Sarker T.C., Akhter M.T., Kabir A.H., Alam M.F.	Indirect plant regeneration in aromatic rice (Oryza sativa L.) var. 'Kalijira' and 'Chinigura'	Acta Agric. Slov.	101	231-238	2013		
38699	0	Campos-Soriano L.a, Val? G.b c, Lupotto E.c, San Segundo B.a	Investigation of rice blast development in susceptible and resistant rice cultivars using a gfp-expressing Magnaporthe oryzae isolate	Plant Pathol.	62	1030-1037	2013		
38700	0	Lang N.T.a, Nha C.T.a, Ha P.T.T.a, Buu B.C.b	Quantitative trait loci (QTLs) associated with drought tolerance in rice (Oryza sativa L.)	Sabrao Journal of Breeding and Genetics	45	409-421	2013		
38701	0	Fageria N.K.a, Moraes O.P.a, Vasconcelos M.J.b	UPLAND RICE GENOTYPES EVALUATION FOR PHOSPHORUS USE EFFICIENCY	J Plant Nutr	36	1868-1880	2013		
38702	23685778	Davidek T.a, Illmann S.a, Rytz A.b, Blank I.a	A holistic approach towards defined product attributes by Maillard-type food processing	Food and Function	4	1105-1110	2013		
38703	0	Sankam P.a, Punvittayagul C.a, Sringam K.b, Chaiyasut C.c, Wongpoomchai R.a	Antimutagenicity and anticlastogenicity of glutinous purple rice hull using in vitro and in vivo testing systems	Molecular and Cellular Toxicology	9	169-176	2013		
38704	0	El Rabey H.a b, Salem K.F.c, Mattar M.Z.d	The genetic diversity and relatedness of eight rice (Oryza sativa L.) cultivars as revealed by AFLP and SSRs markers	Life Science Journal	10	1471-1479	2013		
38705	0	Othman R.a b, Naher U.A.b, Yusoff S.Z.a	Effect of urea-N on growth and indoleacetic acid production of Stenotrophomonas maltophilia (Sb16) isolated from rice growing soils in Malaysia	Chilean Journal of Agricultural Research	73	187-192	2013		
38706	0	Wahler D.a, Schauser L.b, Bendiek J.a, Grohmann L.a	Next-Generation Sequencing as a Tool for Detailed Molecular Characterisation of Genomic Insertions and Flanking Regions in Genetically Modified Plants: A Pilot Study Using a Rice Event Unauthorised in the EU	Food Analytical Methods	6	1718-1727	2013		
38707	0	Petrovic T.a, Burgess L.W.b, Cowie I.c, Warren R.A.a, Harvey P.R.a	Diversity and fertility of Fusarium sacchari from wild rice (Oryza australiensis) in Northern Australia, and pathogenicity tests with wild rice, rice, sorghum and maize	European Journal of Plant Pathology	136	773-788	2013		
38708	0	Gurmani A.R.a, Bano A.b, Ullah N.c, Khan H.a, Jahangir M.a, Flowers T.J.d	Exogenous abscisic acid(ABA) and silicon (Si) promote salinity tolerance by reducing sodium (Na+) transport and bypass flow in rice (Oryza sativa indica)	Aust J Crop Sci	7	1219-1226	2013		
38709	0	Somsana P.a, Wattana P.b, Suriharn B.b, Sanitchon J.a	Stability and genotype by environment interactions for grain anthocyanin content of thai black glutinous upland rice (Oryza sativa)	Sabrao Journal of Breeding and Genetics	45	523-532	2013		
38710	0	Premakumara G.A.S.a, Abeysekera W.K.S.M.a, Ratnasooriya W.D.b, Chandrasekharan N.V.c, Bentota A.P.d	Antioxidant, anti-amylase and anti-glycation potential of brans of some Sri Lankan traditional and improved rice (Oryza sativa L.) varieties	J. Cereal Sci.	58	451-456	2013		
38711	0	Kijoji A.A.a b, Nchimbi-Msolla S.a, Kanyeka Z.L.c, Klassen S.P.b, Serraj R.b d, Henry A.b	Water extraction and root traits in Oryza sativaOryza glaberrima introgression lines under different soil moisture regimes	Functional Plant Biology	40	54-66	2013		
38712	0	Naher U.A.a, Othman R.a b, Panhwar Q.A.b	Beneficial Effects of Mycorrhizal Association for Crop Production in the Tropics - A Review	Int J Agric Biol	15	1021-1028	2013		
38713	0	Pongprayoon W.a d, Roytrakul S.b, Pichayangkura R.c, Chadchawan S.a	The role of hydrogen peroxide in chitosan-induced resistance to osmotic stress in rice (Oryza sativa L.)	Plant Growth Regul.	70	159-173	2013		
38714	0	Santos K.F.D.N.a, Silveira R.D.D.a, Martin-Didonet C.C.G.b, Brondani C.c	Storage protein profile and amino acid content in wild rice oryza glumaepatula	Pesqui. Agropecu. Bras.	48	66-72	2013		
38715	0	Kasetsomboon T.a b, Kate-Ngam S.c, Sriwongchai T.a d, Zhou B.e, Jantasuriyarat C.a b f	Sequence variation of avirulence gene AVR-Pita1 in rice blast fungus, Magnaporthe oryzae	Mycol. Prog.	12	617-628	2013		
38716	23824459	Chernov V.M., Chernova O.A., Gorshkov O.V., Baranova N.B., Mouzykantov A.A., Nesterova T.N., Ponomareva A.A.	Interaction between mycoplasmas and plants: Extracellular membrane vesicles and phytopathogenicity of Acholeplasma laidlawii PG8	Doklady Biochemistry and Biophysics	450	155-159	2013		
38717	0	Casella L.a, Greco R.b, Bruschi G.a, Wozniak B.b, Dreni L.c, Kater M.c, Cavigiolo S.a, Lupotto E.a, Piffanelli P.b	TILLING in European rice: Hunting mutations for crop improvement	Crop Sci.	53	2550-2562	2013		
38718	23940254	Werner A.K.a, Medina-Escobar N.a, Zulawski M.a, Sparkes I.A.b c, Cao F.Q.a, Witte C.P.a	The ureide-degrading reactions of purine ring catabolism employ three amidohydrolases and one aminohydrolase in arabidopsis, soybean, and rice	Plant Physiol.	163	672-681	2013	UGlyAH,UAH,AAH,ALN	OsUGlyAH,OsUAH,OsAAH,OsALN
38719	0	Six L., Smolders E., Merckx R.	The performance of DGT versus conventional soil phosphorus tests in tropical soils-maize and rice responses to P application	Plant Soil	366	49-66	2013		
38720	0	Cerqueira F.B.a, Erasmo E.A.L.b, Silva J.I.C.c, Nunes T.V.d, Carvalho G.P.e, Silva A.A.f	Competition between drought-tolerant upland rice cultivars and weeds under water stress condition [Competi??o entre cultivares de arroz de terras altas tolerantes ? seca e plantas daninhas sob condi??o de estresse h?drico]	Planta Daninha	31	291-302	2013		
38721	0	Rodr?guez M.a, Gonz?lez M.C.b, Cristo E.b, Oliva O.a, Pujol M.a, Borr?s-Hidalgo O.a	Identification of genes with altered expression levels in contrasting rice cultivars exposed to salt stress treatments	Biotecnologia Aplicada	30	178-181	2013		
38722	0	Ahsan S.a, Hussain Z.b, Raza Naqvi S.A.c, Rafique Asi M.d	Effect of gamma radiation on aflatoxin load, amino acid and fatty acid composition of Oryza sativa L	Pak J Bot	45	1577-1580	2013		
38723	0	Vega A., Franco H.	Productivity and quality of the fruiting bodies of edible mushrooms Pleurotus pulmonarius RN2 and P. Djamor RN81 and RN82 grown on different lignocellulosic substrates [Productividad y calidad de los cuerpos fruct?feros de los hongos comestibles Pleurotus pulmonarius RN2 y P. Djamor RN81 y RN82 cultivados sobre sustratos lignocelul?sicos]	Informacion Tecnologica	24	69-78	2013		
38724	0	Kam H.a, Laing M.D.a, S?r? Y.b, Thi?m?l? D.c, Ghesqui?re A.c, Ahmadi N.d, Ndjiondjop M.N.b	Evaluation of a collection of rice landraces from Burkina Faso for resistance or tolerance to rice yellow mottle virus	Journal of Plant Pathology	95	485-492	2013		
38725	0	Wankhade S.D.a b, Cornejo M.J.a, Mateu-Andr?s I.b, Sanz A.a	Morpho-physiological variations in response to NaCl stress during vegetative and reproductive development of rice	Acta Physiologiae Plantarum	35	323-333	2013		
38726	0	Shafiee M.I.a, Boyce A.N.a, Khandaker M.M.a, Saad J.M.b, Aziz T.A.a, Mispan M.S.a, Anuar M.S.M.a, Bakar B.H.a	Pilot studies on rice yield enhancement with foliar application of SBAJA in Sungai Besar, Selangor, Malaysia	Life Science Journal	10	329-335	2013		
38727	23710454	Faseleh Jahromi M.a, Liang J.B.a, Ho Y.W.b, Mohamad R.c d, Goh Y.M.e, Shokryazdan P.b, Chin J.f	Lovastatin in Aspergillus terreus: Fermented rice straw extracts interferes with methane production and gene expression in Methanobrevibacter smithii	Biomed Res Int	2013		2013		
38728	24498832	Weerakoon S.R., Somaratne S., Wijeratne R.G.D., Ekanyaka E.M.S.I.	Natural Herbicide Resistance (HR) to broad-spectrum herbicide, glyphosate among traditional and inbred-cultivated rice (Oryza sativa L.) varieties in Sri Lanka	Pakistan Journal of Biological Sciences	16	796-803	2013		
38729	0	Aumonde T.Z.a d, Ped? T.a d, Borella Juniorb c, Amarante L.b c, Villela F.A.a d	Seed vigor, antioxidant metabolism and initial growth characteristics of red rice seedlings under different light intensities	Acta Botanica Brasilica	27	311-317	2013		
38730	0	Tavares L.C.a, Brunes A.P.a, Da Fonseca D.A.R.a, Gadotti G.I.b, De Tunes L.M.a, Meneghello G.E.a, Barros A.C.S.A.a	Effect of acetic acid on rice seeds coated with rice husk ash	Revista Ceres	60	437-441	2013		
38731	0	Habib N.a, Ashraf M.b c, Shahbaz M.a	Effect of exogenously applied nitric oxide on some key physiological attributes of rice (Oryza sativa L.) plants under salt stress	Pak J Bot	45	1563-1569	2013		
38732	0	Chougourou D.C.a, Togola A.b, Nwilene F.E.c, Adeliossi J.a, Bachabi F.b, Oyetunji O.E.c	Susceptibility of some rice varieties to the lesser grain borer, Rhyzopertha dominica fab. (Coleoptera: Bostrichidae) in Benin	Journal of Applied Sciences	13	173-177	2013		
38733	0	Akram H.M.a, Ali A.a, Sattar A.a, Rehman H.S.U.a, Bibi A.b	Impact of water deficit stress on various physiological and agronomic traits of three Basmati rice (Oryza sativa L.) cultivars	Journal of Animal and Plant Sciences	23	1415-1423	2013		
38734	0	de Souza R.a, Beneduzi A.b, Ambrosini A.a, da Costa P.B.a, Meyer J.a, Vargas L.K.b, Schoenfeld R.c, Passaglia L.M.P.a	The effect of plant growth-promoting rhizobacteria on the growth of rice (Oryza sativa L.) cropped in southern Brazilian fields	Plant Soil	366	585-603	2013		
38735	23564956	Ortiz-Morea F.A.a b, Vicentini R.c, Silva G.F.F.a b, Silva E.M.b, Carrer H.a, Rodrigues A.P.b, Nogueira F.T.S.a b	Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth	J. Exp. Bot.	64	2307-2320	2013		
38736	0	Estrada G.A.a, Baldani V.L.D.b, de Oliveira D.M.c, Urquiaga S.b, Baldani J.I.b	Selection of phosphate-solubilizing diazotrophic Herbaspirillum and Burkholderia strains and their effect on rice crop yield and nutrient uptake	Plant Soil	369	115-129	2013		
38737	0	Akter S.a b, Latif M.A.a d, Mia A.T.a, Ansari T.H.a, Islam M.T.c, Rafii M.Y.d e	Efficacy of fungicides against grain spot disease in rice (Oryza sativa)	Life Science Journal	10	3005-3008	2013		
38738	0	Hakim M.A.a b, Juraimi A.S.c, Razi Ismail M.a c, Hanafi M.M.d, Selamat A.c	A survey on weed diversity in coastal rice fields of Sebarang Perak in Peninsular Malaysia	Journal of Animal and Plant Sciences	23	534-542	2013		
38739	0	Moro E.a, Crusciol C.A.C.b c, Cantarella H.c d, Nascente A.S.e, Moro A.L.a, Broetto F.f	Soil acidity as affecting micronutrients concentration, nitrato reductase enzyme activity and yield in upland rice plants [Acidez do solo afetando concentra??o de micronutrientes, atividade da enzima nitrato redutase e produtividade em plantas de arroz de terras altas]	Semina:Ciencias Agrarias	34	3397-3410	2013		
38740	0	Postrigan' B.N., Knyazev A.V., Kuluev B.R., Chemeris A.V.	Effect of cadmium on promoter activity of rice phytochelatin synthase gene in transgenic tobacco plants	Russian Journal of Plant Physiology	60	701-705	2013		
38741	24349120	Chawade A.a, Lindl?f A.a b, Olsson B.b, Olsson O.a c	Global expression profiling of low temperature induced genes in the chilling tolerant japonica rice Jumli Marshi	PLoS ONE	8		2013		
38742	0	Saleethong P.a, Sanitchon J.b, Kong-ngern K.a, Theerakulpisut P.a	Effects of exogenous spermidine (Spd) on yield, yield-related parameters and mineral composition of rice (Oryza sativa L. ssp. indica) grains under salt stress	Aust J Crop Sci	7	1293-1301	2013		
38743	0	Moratiel R.a b, Mart?nez-Cob A.c	Evapotranspiration and crop coefficients of rice (Oryza sativa L.) under sprinkler irrigation in a semiarid climate determined by the surface renewal method	Irrigation Science	31	411-422	2013		
38744	23918431	Mieulet D., Di?vart A., Droc G., Lanau N., Guiderdoni E.	Reverse genetics in rice using Tos17	Methods in Molecular Biology	1057	205-221	2013		
38745	0	Quazi S.A.J.a, Meon S.b, Jaafar H.c, Ahmad Z.A.B.M.b	Characterization of Fusarium proliferatum through species specific primers and its virulence on rice seeds	Int J Agric Biol	15	649-656	2013		
38746	0	Van Buyten E.a, Banaay C.G.B.b c, Vera Cruz C.b, H?fte M.a	Identity and variability of Pythium species associated with yield decline in aerobic rice cultivation in the Philippines	Plant Pathol.	62	139-153	2013		
38747	0	Maksup S.a, Supaibulwatana K.a, Selvaraj G.b	High-quality reference genes for quantifying the transcriptional responses of Oryza sativa L. (ssp. indica and japonica) to abiotic stress conditions	Chinese Science Bulletin	58	1919-1930	2013	_,_,_	EP,TBC22A, TBC,HNR27C, HNR
38748	0	Cheah T.W.a, Ismail I.a b, Sidek N.M.a, Wagiran A.c, Abdullah R.d	Biosynthesis of very long polyunsaturated Omega-3 and Omega-6 fatty acids in transgenic Japonica rice (Oryza sativa L)	Aust J Crop Sci	7	1227-1234	2013		
38749	0	Mabesa R.L.a, Impa S.M.a, Grewal D.b, Johnson-Beebout S.E.a	Contrasting grain-Zn response of biofortification rice (Oryza sativa L.) breeding lines to foliar Zn application	Field Crops Res.	149	223-233	2013		
38750	22869288	Jackson M.A., Anderson D.J., Birch R.G.	Comparison of Agrobacterium and particle bombardment using whole plasmid or minimal cassette for production of high-expressing, low-copy transgenic plants	Transgenic Res.	22	143-151	2013		
38751	0	Boonrueng N., Anuntalabhochai S., Jampeetong A.	Morphological and anatomical assessment of KDML 105 (Oryza sativa L. spp. indica) and its mutants induced by low-energy ion beam	Rice Science	20	213-219	2013		
38752	0	Clerget B.a b, Bueno C.b	The effect of aerobic soil conditions, soil volume and sowing date on the development of four tropical rice varieties grown in the greenhouse	Functional Plant Biology	40	79-88	2013		
38753	0	Lu H.a b, Shi Z.Y.a	Molecular research progress of rice panicle development	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	111-121	2013		
38755	0	Valarmathi P.a b, Rabindran R.a b, Velazhahan R.a b, Suresh S.a b, Robin S.a b	First report of Rice orange leaf disease phytoplasma (16 SrI) in rice (Oryza sativa) in India	Australas. Plant Dis. Notes	8	141-143	2013		
38756	0	Singh V.K., Kumar V.	Delineation of sulphur deficiencies in Trans-Gangetic Plain and on-farm sulphur management for higher productivity and profits in rice (Oryza sativa)-wheat (Triticum aestivum) system	Indian Journal of Agricultural Sciences	83	1340-1346	2013		
38757	0	Devi G.L., Koradi P., Shenoy V., Shanti M.L.	Marker-assisted selection: Evaluation of bacterial blight resistance in the pyramids of fertility restorer lines	Journal of Plant Pathology	95	299-311	2013		
38758	24506038	Bekele B.D.a b, Naveen G.K.a c, Rakhi S.a c, Shashidhar H.E.a	Genetic evaluation of recombinant inbred lines of rice (Oryza sativa L.) for grain zinc concentrations, yield related traits and identification of associated SSR markers	Pakistan Journal of Biological Sciences	16	1714-1721	2013		
38759	0	Kiran T.V., Rao Y.V., Subrahmanyam D., Rani N.S., Bhadana V.P., Rao P.R., Voleti S.R.	Variation in leaf photosynthetic characteristics in wild rice species	Photosynthetica	51	350-358	2013		
38760	0	de Waele D.a b c, Das K.b d, Zhao D.b, Tiwari R.K.S.e, Shrivastava D.K.d, Vera-Cruz C.b, Kumar A.b	Host response of rice genotypes to the rice root-knot nematode (Meloidogyne graminicola) under aerobic soil conditions	Archives of Phytopathology and Plant Protection	46	670-681	2013		
38761	0	Elanchezhian R.a, Kumar S.b, Singh S.S.b, Dwivedi S.K.b, Shivani S.b, Bhatt B.P.b	Plant survival, growth and yield attributing traits of rice (Oryza sativa L.) genotypes under submergence stress in rainfed lowland ecosystem	Indian Journal of Plant Physiology	18	326-332	2013		
38762	0	Patil A.S.P., Nanjappa H.V., Ramachandrappa B.K.	Root and tillering behaviour study of aerobic rice (Oryza sativa L.) genotypes for targeted yield under site specific nutrient management (SSNM) approach	Research on Crops	14	654-660	2013		
38763	0	Singh D.a, Bhaskar B.P.a b, Baruah U.a c, Sarkar D.a b, Vadivelu S.a	Economic appraisal of rice (Oryza sativa) based cropping sequences in major soil series of upper Asom	Indian Journal of Agricultural Sciences	83	326-330	2013		
38764	0	Das T.a, Shukla Y.M.a, Poonia T.C.a b, Meena M.a, Meena M.D.a c	Effects of brassinolide on physiological characteristics of rice (Oryza sativa L.) with different salinity levels	Ann Biol	29	228-231	2013		
38765	0	Chawla S., Jain S., Jain V.	Salinity induced oxidative stress and antioxidant system in salt-tolerant and salt-sensitive cultivars of rice (Oryza sativa L.)	J. Plant Biochem. Biotechnol.	22	27-34	2013		
38766	23054487	Mohanlal S.a, Maney S.K.b, Santhoshkumar T.R.b, Jayalekshmy A.a	Tricin 4-O-(erythro-beta-guaiacylglyceryl) ether and tricin 4-O-(threo-beta-guaiacylglyceryl) ether isolated from Njavara (Oryza sativa L. var. Njavara), induce apoptosis in multiple tumor cells by mitochondrial pathway	J Nat Med	67	528-533	2013		
38767	0	Lore J.S.a, Hunjan M.S.a, Singh P.a, Willocquet L.b c, Sri S.d, Savary S.b c	Phenotyping of Partial Physiological Resistance to Rice Sheath Blight	Journal of Phytopathology	161	224-229	2013		
38768	0	Devi N.D.A.b, Pushpalatha K.C.a	Monitoring and biocontrol of paddy fungal pathogens collected from Hassan district	Journal of Biopesticides	6	6-13	2013		
38769	0	Biswas T.a, Das A.a, Bhattacharyya S.b	Marker assisted selection for developing high yielding submergence tolerant rice (Oryza sativa L.) genotypes with slender grain	Cereal Res. Commun.	41	35-44	2013		
38770	0	Roy B., Bhadra S.	Hematoxylin staining of seedling roots is a potential phenotypic index for screening of aluminium tolerance in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	194-198	2013		
38771	0	Kumar A.a, Gul M.Z.a, Zeeshan A.b, Bimolata W.a, Qureshi I.A.c, Ghazi I.A.a	Differential antioxidative responses of three different rice genotypes during bacterial blight infection	Aust J Crop Sci	7	1893-1900	2013		
38772	0	Padmavathi P.V.a, Satyanarayana P.V.b, Lal Ahamed M.a	Stability analysis of rice (Oryza sativa L.) hybrids utilizing regression and AMMI models	Vegetos	26	148-153	2013		
38773	0	Srinivasarao C.a, Venkateswarlu B.a, Lal R.b, Singh A.K.c, Kundu S.a	Sustainable management of soils of dryland ecosystems of india for enhancing agronomic productivity and sequestering carbon	Advances in Agronomy	121	253-329	2013		
38774	0	Alam M.M.a, Karim M.R.a, Ladha J.K.b	Integrating best management practices for rice with farmers' crop management techniques: A potential option for minimizing rice yield gap	Field Crops Res.	144	62-68	2013		
38775	0	Kamaraj B.a, Purohit R.a b	In-silico analysis of Betaine Aldehyde dehydrogenase2 of Oryza sativa and significant mutations responsible for fragrance	J Plant Interact	8	321-333	2013		
38776	0	Shakir Y.a b, Mannan A.a c, Shakeel S.a c	CP-HSP gene transcribe in rice (Oryza sativa) under heavy metal stress	Indian Journal of Agricultural Sciences	83	386-390	2013		
38777	0	Banumathy S.a b, Thiyagarajan K.a, Manonmani S.a	Evaluation of rice genotypes for fertility restoration against WA and O. perennis cytoplasm based cytoplasmic male sterility	Indian Journal of Genetics and Plant Breeding	73	199-202	2013		
38778	0	Sood N.a, Sohal B.S.a, Lore J.S.b	Foliar application of benzothiadiazole and salicylic acid to combat sheath blight disease of rice	Rice Science	20	349-355	2013		
38779	0	Punithavalli M.a, Muthukrishnan N.M.b, Rajkumar M.Bc	Influence of Rice Genotypes on Folding and Spinning Behaviour of Leaffolder (Cnaphalocrocis medinalis) and Its Interaction with Leaf Damage	Rice Science	20	422-450	2013		
38780	0	Yadav S.K.a b, Singh Y.a c, Yadav M.K.a d, Babu S.a e, Singh K.a	Effect of organic nitrogen sources on yield, nutrient uptake and soil health under rice (Oryza sativa) based cropping sequence	Indian Journal of Agricultural Sciences	83	170-175	2013		
38781	0	Hakeem K.R.a b, Mir B.A.c, Qureshi M.I.d, Ahmad A.a, Iqbal M.a	Physiological studies and proteomic analysis for differentially expressed proteins and their possible role in the root of N-efficient rice (Oryza sativa L.)	Molecular Breeding	32	785-798	2013		
38782	0	Yadav G.S.a, Datta M.a, Babu S.a b, Debnath C.a, Sarkar P.K.a	Growth and productivity of lowland rice (Oryza sativa) as influenced by substitution of nitrogen fertilizer by organic sources	Indian Journal of Agricultural Sciences	83	1038-1042	2013		
38783	0	Rathi S.a, Sarma R.N.a b, Yadav R.N.S.a	Variation in seed dormancy and alpha-amylase activity in Indian rice (Oryza sativa) accessions	Indian Journal of Agricultural Sciences	83	56-62	2013		
38784	0	Chandusingh P.R.b, Singh N.K.c, Prabhu K.V.a, Vinod K.K.a, Singh A.K.a	Molecular mapping of quantitative trait loci for grain chalkiness in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	244-251	2013		
38785	0	Dehury B.a b, Sarma K.a, Sarmah R.a, Sahu J.a, Sahoo S.a, Sahu M.a, Sen P.a, Modi M.K.a, Sharma G.D.b, Choudhury M.D.b, Barooah M.a	In silico analyses of superoxide dismutases (SODs) of rice (Oryza sativa L.)	J. Plant Biochem. Biotechnol.	22	150-156	2013		
38786	0	Thakur A.K., Rath S., Mandal K.G.	Differential responses of system of rice intensification (SRI) and conventional flooded-rice management methods to applications of nitrogen fertilizer	Plant Soil	370	59-71	2013		
38787	0	Masthana Reddy B.G.a, Ravishankara b, Balaganhvi S.a, Joshi V.R.a	Nutrient management of rice (Oryza sativa) under system of rice intensification (SRI)	Indian Journal of Agricultural Sciences	83	591-594	2013		
38788	0	Imam J.a b, Alam S.a, Variar M.a, Shukla P.b	Identification of rice blast resistance gene Pi9 from Indian rice land races with STS marker and its verification by virulence analysis	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	83	499-504	2013		
38789	0	Kumar S., Mall A.K., Singh P.K., Verma O.P., Verma G.P., Kumar M.	Interrelationships for yield and component traits in rainfed upland rice (oryza sativa L.)	Plant Archives	13	287-290	2013		
38790	0	Roy S.C., Roy T.	Peptide mass fingerprinting of rice (Oryza sativa L.) leaves during UV-B induced stress at seedling stage: A proteom analysis	Indian J. Biotechnol.	12	504-508	2013		
38791	0	Mallikarjuna B.P.a, Shivakumar N.a, Hittalmani S.a, Prahalada G.D.a, Lohithaswa H.C.a b, Krishnappa M.R.a b	Validation of SSR markers linked to fertility restoration in rice (Oryza sativa L.)	Research on Crops	14	324-329	2013		
38792	0	Bhattacharjee S.a b	Heat and chilling induced disruption of redox homeostasis and its regulation by hydrogen peroxide in germinating rice seeds (Oryza sativa L., Cultivar Ratna)	Physiology and Molecular Biology of Plants	19	199-207	2013		
38793	0	Pyngrope S., Bhoomika K., Dubey R.S.	oxidative stress, protein carbonylation, proteolysis and antioxidative defense system as a model for depicting water deficit tolerance in Indica rice seedlings	Plant Growth Regul.	69	149-165	2013		
38794	0	Yadav S.K.a, Singh Y.b, Kumar R.P.c, Yadav M.K.c, Singh K.c	Effect of organic nitrogen sources on yield quality and nutrient uptake of rice (Oryza sativa) under different cropping system	Vegetos	26	58-66	2013		
38795	0	Patil P.a b, Nanjappa A.S.a c, Ramachandrappa H.V.a d, Hittalmani B.K.a e, Shailajaa, Basavaraj P.K.a f	Performance of aerobic rice (Oryza sativa L.) genotypes under site specific nutrient management (SSNM)	Research on Crops	14	350-356	2013		
38796	0	Punithavalli M.a, Muthukrishnan N.M.b, Rajkuma M.B.c	Defensive responses of rice genotypes for resistance against rice leaffolder cnaphalocrocis medinalis	Rice Science	20	363-370	2013		
38797	0	Mondal S., Bose B.	Improvement in regeneration potentiality by using magnesium nitrate primed seeds of rice in vitro	Vegetos	26	98-104	2013		
38798	0	Roy M.L.a b, Srivastava R.C.a	Effect of integrated use of chemical fertilizer and bioinoculents on growth, nitrate assimilation and yield of rice (Oryza sativa l.)	Indian Journal of Agricultural Research	48	419-424	2013		
38799	0	Mahalingam A.a, Saraswathi R.b, Ramalingam J.c, Jayaraj T.d	Genetics of floral traits in Cytoplasmic male sterile (CMS) and restorer lines of hybrid rice (Oryza sativa L.)	Pak J Bot	45	1897-1904	2013		
38800	24431506	Gayacharana, Joel A.J.b	Epigenetic responses to drought stress in rice (Oryza sativa L.)	Physiology and Molecular Biology of Plants	19	379-387	2013		
38801	0	Shah J.M., Singh R., Veluthambi K.	Transgenic rice lines constitutively co-expressing tlp-D34 and chi11 display enhancement of sheath blight resistance	Biol. Plant.	57	351-358	2013		
38802	0	Bhoomika K., Pyngrope S., Dubey R.S.	Differential responses of antioxidant enzymes to aluminum toxicity in two rice (Oryza sativa L.) cultivars with marked presence and elevated activity of Fe SOD and enhanced activities of Mn SOD and catalase in aluminum tolerant cultivar	Plant Growth Regul.	71	235-252	2013		
38803	23829075	Das A., Paul T., Halder S.K., Maity C., Mohapatra P.K.D., Pati B.R., Mondal K.C.	Study on regulation of growth and biosynthesis of cellulolytic enzymes from newly isolated aspergillus fumigatus ABK9	Polish Journal of Microbiology	62	31-43	2013		
38804	0	Shikari A.B.a, Khanna A.a, Krishnan S.G.a, Singh U.D.b, Rathour R.c, Tonapi V.d, Sharma T.R.e, Nagarajan M.f, Prabhu K.V.a, Singh A.K.a	Molecular analysis and phenotypic validation of blast resistance genes Pita and Pita2 in landraces of rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	131-141	2013		
38805	0	Kumar S.a, Dwivedi S.K.a, Elanchezhian R.b, Singh S.S.a, Singh O.N.c, Arora A.d, Bhatt B.P.a	Influence of aerobic condition on physiological traits and yield attributes of rice (Oryza sativa L.) genotypes under rainfed lowland ecosystem	Indian Journal of Plant Physiology	18	263-269	2013		
38806	0	Ghosh S.C., Chandrakar P.K., Rastogi N.K.	Gene action and fertility restoration behavior of the tropical japonica/ indica, japonica/indica derived restorers in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	73	23-28	2013		
38807	0	Krishnan S.R., Priya A.M., Ramesh M.	Rapid regeneration and ploidy stability of 'cv IR36' indica rice (Oryza Sativa. L) confers efficient protocol for in vitro callus organogenesis and Agrobacterium tumefaciens mediated transformation	Botanical Studies	54		2013		
38809	0	Park S.J.a, Lee Y.H.a, Nam Y.J.a, Baik B.K.b, Kim T.W.a	Peptide-based biomarker discovery for identification of rice cultivars using surface enhanced laser desorption/ionization time-of-flight mass spectrometry	Crop Sci.	53	987-995	2013		
38810	0	Yun Y.B.a, Park J.I.a, Choi H.S.b, Jung H.I.c, Jang S.J.a, Back K.d, Kuk Y.I.a	Protoporphyrinogen oxidase-overexpressing transgenic rice is resistant to drought stress	Crop Sci.	53	1076-1085	2013		
38811	0	Balkunde S.a, Le H.L.b, Lee H.S.a, Kim D.M.a, Kang J.W.a, Ahn S.N.a	Fine mapping of a QTL for the number of spikelets per panicle by using near-isogenic lines derived from an interspecific cross between Oryza sativa and Oryza minuta	Plant Breeding	132	70-76	2013		
38812	23110463	Nguyen Le T.N.b, Byeon Y.a, Kim Y.S.a, Back K.a	Transient induction of melatonin biosynthesis in rice (Oryza sativa L.) during the reproductive stage Sangkyu Park1	J. Pineal Res.	55	40-45	2013	SL,_,_,ASA2	OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,OsTSA, pOsTSA, TSbeta,ZRP4, OMT, ASMT, OsASMT1, ASMT1,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2
38813	0	Hur Y.J.a, Jeung J.U.a, Kim S.Y.a, Park H.S.a, Cho J.H.a, Lee J.Y.a, Sohn Y.B.a, Song Y.C.a, Park D.S.a, Lee C.W.a, Sohn J.G.b, Nam M.H.a, Lee J.H.a	Functional markers for bacterial blight resistance gene Xa3 in rice	Molecular Breeding	31	981-985	2013		
38814	0	Park S.K.a, Kwak D.Y.a, Park D.S.a, Shin D.J.a, Hwang W.H.a, Kim M.H.a, Hur Y.J.a, Cho J.H.a, Song Y.C.a, Lee J.Y.a, Nam M.H.a, Choi I.R.b, Lee J.H.a	Fine mapping of Grh1, a major gene associated with antibiosis to green rice leafhopper in rice	Molecular Breeding	32	729-733	2013		
38815	0	Gutierrez J.a, Kim S.Y.a, Kim P.J.a b	Effect of rice cultivar on CH4 emissions and productivity in Korean paddy soil	Field Crops Res.	146	16-24	2013		
38816	0	Lee J.H.a, Shin K.S.a, Suh S.C.a, Rhim S.L.b, Lee Y.H.a, Lim M.H.a, Woo H.J.a, Qin Y.a, Cho H.S.a	cryIIIA toxin gene expression in transgenic rice confers resistance to rice water weevil	Plant Cell Tissue Organ Cult.	115	243-252	2013		
38817	24385365	Hwang I.S.a, Kang W.R.a, Hwang D.J.a, Bae S.C.a, Yun S.H.b, Ahn I.P.a	Evaluation of bakanae disease progression caused by Fusarium fujikuroi in Oryza sativa L.	Journal of Microbiology	51	858-865	2013		
38818	0	Monaco M.K.a, Sen T.Z.b c, Dharmawardhana P.D.d, Ren L.a, Schaeffer M.b e, Naithani S.f, Amarasinghe V.d, Thomason J.a, Harper L.b g, Gardiner J.c h, Cannon E.K.S.c, Lawrence C.J.b c, Ware D.a b, Jaiswal P.d	Maize metabolic network construction and transcriptome analysis	Plant Genome	6		2013		
38819	0	Hay F.R.a, de Guzman F.a, Ellis D.b, Makahiya H.c, Borromeo T.c, Hamilton N.R.S.a	Viability of Oryza sativa L. seeds stored under genebank conditions for up to 30 years	Genet. Resour. Crop Evol.	60	275-296	2013		
38820	0	Showler A.T.a, Cook S.C.b, Abrigo V.a	Transgenic Bt corn varietal resistance against the Mexican rice borer, Eoreuma loftini (Dyar) (Lepidoptera: Crambidae) and implications to sugarcane	Crop Protection	48	57-62	2013		
38821	0	Sha X.Y.a, Linscombe S.D.a, Groth D.E.a, Oard J.H.b, Harrell D.L.a, White L.M.a, Grimm C.C.c, Theunissen S.J.a, Henry B.J.a	Registration of 'Jazzman-2' aromatic long-grain rice	Journal of Plant Registrations	7	26-30	2013		
38822	0	Brye K.R., Rogers C.W., Smartt A.D., Norman R.J.	Soil texture effects on methane emissions from direct-seeded, delayed-flood rice production in Arkansas	Soil Sci	178	519-529	2013		
38823	0	Burow G.a, Franks C.a b, Xin Z.a, Burke J.a	Developmental and genetic characterization of a short leaf mutant of sorghum (Sorghum bicolor L. (Moench.))	Plant Growth Regul.	71	271-280	2013		
38824	23833164	Tatarinova T.a, Elhaik E.b, Pellegrini M.c	Cross-species analysis of genic GC3 content and DNA methylation patterns	Genome Biol Evol	5	1443-1456	2013		
38825	0	Lyman N., Nalley L.L.	Economic analysis of hybrid rice performance in Arkansas	Agron J	105	977-988	2013		
38826	0	Pinson S.R.M.a b, Jia Y.b, Gibbons J.W.c d	Three quantitative trait loci conferring resistance to kernel fissuring in rice identified by selective genotyping in two tropical Japonica populations	Crop Sci.	53	2434-2443	2013		
38827	0	Ortiz A.a, Blanco S.b, Arana G.c, L?pez L.d, Torres S.a, Quintana Y.a, P?rez P.a, Zambrano C.a, Fischer A.e	Current status in resistance of Ischaemum rugosum Salisb. to herbicide bispiribac-sodio in Venezuela [Estado actual de la resistencia de Ischaemum rugosum Salisb. al herbicida bispiribac-sodio en Venezuela]	Bioagro	25	79-89	2013		
38828	0	Aver'yanov A.A.a, Zakharenkova T.S.a, Lapikova V.P.a, Pasechnik T.D.a, Gaivoronskaya L.M.b, Baker C.J.c	Exogenous superoxide dismutase may lose its antidotal ability on rice leaves	Russian Journal of Plant Physiology	60	270-278	2013		
38829	0	Imai I.a, Kimball J.A.b, Conway B.c, Yeater K.M.d, McCouch S.R.a, McClung A.e	Validation of yield-enhancing quantitative trait loci from a low-yielding wild ancestor of rice	Molecular Breeding	32	101-120	2013		
38830	24280345	Dharmawardhana P.a, Ren L.b, Amarasinghe V.a, Monaco M.b, Thomason J.b, Ravenscroft D.c, McCouch S.c, Ware D.b, Jaiswal P.a	A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress	Rice (N Y)	6	15	2013		
38832	0	Eizenga G.C.a, Prasad B.b c, Jackson A.K.a, Jia M.H.a	Identification of rice sheath blight and blast quantitative trait loci in two different O. sativa/O. nivara advanced backcross populations	Molecular Breeding	31	889-907	2013		
38833	0	Xu S.a b, Zhu S.c, Jiang Y.a, Wang N.a, Wang R.b, Shen W.a, Yang J.d	Hydrogen-rich water alleviates salt stress in rice during seed germination	Plant Soil	370	47-57	2013		
38834	0	Li X.L., Xu J., Yu G.Q., Luo L.	A wound-induced small polypeptide gene family is upregulated in soybean nodules	Chinese Science Bulletin	58	1003-1009	2013		
38835	0	Lin J.Z.a, Yang Y.Z.b, Zhou B.a, Fu C.J.b, Du C.Q.a, Hu X.C.b, Tang D.Y.a, Zhao X.Y.a, Shi J.W.a, Zhu Y.H.a, Liu X.M.a	A new and effective somatic mutagenesis rice breeding method	Hunan Daxue Xuebao/Journal of Hunan University Natural Sciences	40	79-85	2013		
38836	0	Wei Z.a, Yun H.a, Fuqiang L.a, Zhiyong L.a b, Wanjun R.a, Wenyu Y.a	Effects of postponing nitrogen applications on leaf senescence of indica hybrid rice	Research on Crops	14	357-366	2013		
38837	0	Liu L.a, Chen T.a, Wang Z.a, Zhang H.a, Yang J.a, Zhang J.b	Combination of site-specific nitrogen management and alternate wetting and drying irrigation increases grain yield and nitrogen and water use efficiency in super rice	Field Crops Res.	154	226-235	2013		
38838	0	He J.a, Liu Y.a, Liu Y.a, Jiang L.a, Wu H.a, Kang H.a, Liu S.a, Chen L.a, Liu X.a, Cheng X.a, Wan J.a b	High-resolution mapping of brown planthopper (BPH) resistance gene Bph27(t) in rice (Oryza sativa L.)	Molecular Breeding	31	549-557	2013		
38839	0	Zeng Y.a, Ma L.a, Ji Z.a, Wen Z.a, Li X.a, Shi C.b, Yang C.a	Fine mapping and candidate gene analysis of lm3, a novel lesion mimic gene in rice	Biologia (Poland)	68	82-90	2013	LM3	UroD, URO-D
38840	0	Wang J.a b, Zeng Q.a, Zhu J.a, Liu G.a, Tang H.a	Dissimilarity of ascorbate-glutathione (AsA-GSH) cycle mechanism in two rice (Oryza sativa L.) cultivars under experimental free-air ozone exposure	Agriculture, Ecosystems and Environment	165	39-49	2013		
38841	0	Mu P.a, Li Z.b	Correlation analysis and QTL mapping of osmotic potential in japonica rice under upland and lowland conditions	Canadian Journal of Plant Science	93	785-792	2013		
38842	0	Zhu L., Shi J., Zhao G., Zhang D., Liang W.	Post-meiotic deficient anther1 (PDA1) encodes an ABC transporter required for the development of anther cuticle and pollen exine in rice	Journal of Plant Biology	56	59-68	2013		
38843	0	Yang M., Sun F., Wang S., Qi W., Wang Q., Dong X., Yang J., Luo X.	Down-regulation of OsPDCD5, a homolog of the mammalian PDCD5, increases rice tolerance to salt stress	Molecular Breeding	31	333-346	2013		
38844	24376625	Zhang X.X.a, Tang Y.J.a, Ma Q.B.a, Yang C.Y.a, Mu Y.H.a, Suo H.C.a, Luo L.H.b, Nian H.a	OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean	PLoS ONE	8		2013		
38845	0	Zhou S.a b c d, Zhu M.c d, Wang F.c d, Huang J.a b, Wang G.a b	Mapping of QTLs for yield and its components in a rice recombinant inbred line population	Pak J Bot	45	183-189	2013		
38846	0	Yang H.M., Xue Z.Y., Zhao L., Qi X.Q., Huang F.	Increased chlorophyll content and plant height of transgenic rice expressing sbtA of Synechocystis sp. PCC 6803	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	351-356	2013		
38847	0	Liu L.a b, Wang E.b, Zhu Y.a, Tang L.a, Cao W.a	Quantifying three-decade changes of single rice cultivars in China using crop modeling	Field Crops Res.	149	84-94	2013		
38848	0	Zhang Z.a, Chu G.a, Liu L.a, Wang Z.a, Wang X.a, Zhang H.a, Yang J.a, Zhang J.b	Mid-season nitrogen application strategies for rice varieties differing in panicle size	Field Crops Res.	150	9-18	2013		
38849	0	Ma X.a, Cheng Z.a, Wu F.a, Jin M.a, Zhang L.b, Zhou F.b, Wang J.a, Zhou K.b, Ma J.a, Lin Q.a, Lei C.a, Wan J.a b	BEAK LIKE SPIKELET1 is Required for Lateral Development of Lemma and Palea in Rice	Plant Molecular Biology Reporter	31	98-108	2013	G1L1,G1L5,G1L7,G1,G1L2,G1L4,BLS1,G1L9,G1L3,G1L8	OsG1L1,OsG1L5, TAW1, OsTAW1,OsG1L7,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,OsG1L2,OsG1L4,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsG1L9,OsG1L3,OsG1L8
38850	0	Tang W.a b, Page M.b	Overexpression of the Arabidopsis AtEm6 gene enhances salt tolerance in transgenic rice cell lines	Plant Cell Tissue Organ Cult.	114	339-350	2013		
38851	0	Feng B.H.a, Yang Y.a b, Shi Y.F.a, Lin L.c, Chen J.a, Wei Y.L.a b, Leung H.d, Wu J.L.a	Genetic Analysis and Gene Mapping of Light Brown Spotted Leaf Mutant in Rice	Rice Science	20	13-18	2013		
38852	0	Chen S.J., Liu Q.Q.	T-DNA tagging of the OsGUN4 gene resulted in the yellow-green leaf mutation in rice (oryza sativa L.)	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	778-786	2013		
38853	0	Sheng Z.a b, Wei X.a, Shao G.a, Chen M.a, Song J.a, Tang S.a, Luo J.a, Hu Y.b, Hu P.a, Chen L.b	Genetic analysis and fine mapping of tms9, a novel thermosensitive genic male-sterile gene in rice (Oryza sativa L.)	Plant Breeding	132	159-164	2013		
38854	0	Zhu Q.C., Wei C.Z., Li M.N., Zhu J.L., Wang J.	Nutrient availability in the rhizosphere of rice grown with plastic film mulch and drip irrigation	Journal of Soil Science and Plant Nutrition	13	943-953	2013		
38855	0	Chen F.a, Jiang L.a, Zheng J.a, Huang R.a b, Wang H.a, Hong Z.b, Huang Y.a	Identification of a co-segregative protein associated with the tillering trait in rice (Oryza sativa L.)	Plant OMICS	6	36-45	2013		
38856	23661451	Zhang C.Y.a b, Wang N.N.c, Zhang Y.H.a, Feng Q.Z.a, Yang C.W.a, Liu B.a	DNA methylation involved in proline accumulation in response to osmotic stress in rice (Oryza sativa)	Genetics and Molecular Research	12	1269-1277	2013	P5CS,P5CR,OAT	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsP5CR,OsOAT, delta-OAT
38857	0	Feng G.N.a b, Zhang C.Q.a, Zhao D.S.a, Zhu K.Z.a, Tu H.Z.a, Xu C.W.a, Liu Q.Q.a	Fine mapping and cloning of leafy head mutant gene pla1-5 in rice	Rice Science	20	329-335	2013		
38858	0	Wang N.a b c, Li Y.F.a b c, Sang X.C.a b c, Ling Y.H.a b c, Zhao F.M.a b c, Yang Z.L.a b c, He G.H.a b c	Nonstop glumes (NSG), a novel mutant affects spikelet development in rice	Genes and Genomics	35	149-157	2013		
38859	0	Wang Y.a b, Zang J.a c, Sun Y.a, Ali J.d, Xu J.a, Li Z.a	Background-independent quantitative trait loci for drought tolerance identified using advanced backcross introgression lines in rice	Crop Sci.	53	430-441	2013		
38860	0	Xiong J., Ding C.Q., Wei G.B., Ding Y.F., Wang S.H.	Characteristic of dry-matter accumulation and nitrogen-uptake of super-high-yielding early rice in China	Agron J	105	1142-1150	2013		
38861	0	Xu P.a c, Yan W.c, He J.a, Li Y.b, Zhang H.a, Peng H.a, Wu X.a	DNA methylation affected by male sterile cytoplasm in rice (Oryza sativa L.)	Molecular Breeding	31	719-727	2013		
38862	0	Liu W.a, Ji S.b, Fang X.a c, Wang Q.a, Li Z.a, Yao F.a, Hou L.a, Dai S.b	Protein Kinase LTRPK1 Influences Cold Adaptation and Microtubule Stability in Rice	J. Plant Growth Regul.	32	483-490	2013	HBD2	OsCKI1, CKI, hbd2, CKI1, LTG1, OsCKI1/LTRPK1, LTRPK1, OsLTRPK1
38863	0	Wang Y.P.a, Wu Y.H.b, Liu P.a, Zheng G.H.a, Zhang J.Pa, Xu G.D.a	Effects of potassium on organic acid metabolism of Fe-sensitive and Fe-resistant rices (Oryza sativa L.)	Aust J Crop Sci	7	843-848	2013		
38864	0	Chen W.a b, Wang Y.a, Zhao Z.a, Cui F.b, Gu J.b, Zheng X.b	The effect of planting density on carbon dioxide, methane and nitrous oxide emissions from a cold paddy field in the Sanjiang Plain, northeast China	Agriculture, Ecosystems and Environment	178	64-70	2013		
38865	0	Lu H.a b, Shi Z.Y.a	Research progress on the molecular function of plant-specific LBD gene	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	833-846	2013		
38866	0	Chen Y.a b d, Zhang Y.a b d, Yao J.c, Li Y.F.c, Yang X.a b d, Wang W.X.a b d, Zhang A.F.a b d, Gao T.C.a b d	Frequency distribution of sensitivity of Ustilaginoidea virens to four EBI fungicides, prochloraz, difenoconazole, propiconazole and tebuconazole, and their efficacy in controlling rice false smut in Anhui Province of China	Phytoparasitica	41	277-284	2013		
38867	0	Shahid M.Q., Chen F.Y., Li H.Y., Wang S.Z., Chen P.F., Lin S.Q., Liu X.D., Lu Y.G.	Double-neutral genes, Sa-n and Sb-n, for pollen fertility in rice to overcome indica ~ Japonica hybrid sterility	Crop Sci.	53	164-176	2013		
38868	0	Wang X., Fang G., Li Y., Ding M., Gong H., Li Y.	Differential antioxidant responses to cold stress in cell suspension cultures of two subspecies of rice	Plant Cell Tissue Organ Cult.	113	353-361	2013		
38869	0	Wang X.M.a, Zhou J.a, Yang Y.a, Yu F.B.a b, Chen J.a b, Yu C.L.a, Wang F.a, Cheng Y.a, Yan C.Q.a, Chen J.P.a	Transcriptome Analysis of a Progeny of Somatic Hybrids of Cultivated Rice (Oryza sativa L.) and Wild Rice (Oryza meyeriana L.) With High Resistance to Bacterial Blight	Journal of Phytopathology	161	324-334	2013		
38870	0	Li X.T.a b c, Cheng H.T.a b, Wang N.d, Yu C.M.a b, Qu L.Y.a b, Cao P.a b, Hu N.a b, Liu T.a b, Lyu W.Y.a b	Critical factors for grain filling of erect panicle type Japonica rice cultivars	Agron J	105	1404-1410	2013		
38871	0	Sun C.M.a, Liu T.a, Guo D.D.a, Zhuang H.Y.a, Wang Y.L.a, Zhu J.G.b	Numerical simulation of root growth dynamics of CO2-enriched hybrid rice cultivar shanyou 63 under fully open-air field conditions	Journal of Integrative Agriculture	12	781-787	2013		
38872	0	Shahid M.Q.a, Li Y.J.a, Saleem M.F.b, Naeem M.a c, Wei C.M.a, Liu X.D.a	Yield and yield components in autotetraploid and diploid rice genotypes (indica and japonica) sown in early and late seasons	Aust J Crop Sci	7	632-641	2013		
38873	0	Huang F.a, Fu X.a, Efisue A.b, Zhang S.c, Xie G.a, He W.a, Nevame A.Y.M.a, Jin D.a	Genetically characterizing a new indica cytoplasmic male sterility with oryza glaberrima cytoplasm for its potential use in hybrid rice production	Crop Sci.	53	132-140	2013		
38874	0	Mei D.Y., Zhu Y.J., Yu Y.H., Fan Y.Y., Huang D.R., Zhuang J.Y.	Quantitative Trait Loci for Grain Chalkiness and Endosperm Transparency Detected in Three Recombinant Inbred Line Populations of Indica Rice	Journal of Integrative Agriculture	12	1-11	2013		
38875	0	Zhu Y., Wang Q., Hu J., Zhu L., Wang J., Zhu S., Guan Y.	High resolution melting curve analysis: An efficient method for fingerprinting of hybrid rice cultivars and their parental lines	Aust J Crop Sci	7	2048-2053	2013		
38877	0	Hassan W.a, Chen W.a, Huang Q.a b, Mohamed I.b c	Microcalorimetric evaluation of soil microbiological properties under plant residues and dogmatic water gradients in Red soil	Soil Sci. Plant Nutr.	59	858-870	2013		
38878	0	Zhang H.a, Wang H.a, Qian Y.a b, Xia J.c, Li Z.c, Shi Y.a b, Zhu L.a, Ali J.d, Gao Y.a, Li Z.a	Simultaneous improvement and genetic dissection of grain yield and its related traits in a backbone parent of hybrid rice (Oryza sativa L.) using selective introgression	Molecular Breeding	31	181-194	2013		
38879	23697167	Sun H., Lang Z., Zhu L., Huang D.	Optimized condition for protoplast isolation from maize, wheat and rice leaves	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	29	224-234	2013		
38880	0	Luo K.a b, Zhu J.a, Liu G.a, Tang H.a, Li C.a b, Zeng Q.a	Responses of dry matter production and distribution in rice (Oryza sativa L.) to ozone and high nitrogen supply	Chinese Journal of Applied and Environmental Biology	19	286-292	2013		
38881	0	Tan Y.Y.a b, Fu H.W.c, Zhao H.J.a b, Lu S.a b, Fu J.J.b, Li Y.F.c, Cui H.R.a b, Shu Q.Y.a b	Functional molecular markers and high-resolution melting curve analysis of low phytic acid mutations for marker-assisted selection in rice	Molecular Breeding	31	517-528	2013		
38882	0	Rao Y.C.a, Yang Y.L.b, Xin D.D.a, Li X.J.a, Zhai K.E.a, Ma B.J.a, Pan J.W.a, Qian Q.b, Zeng D.L.b	Characterization and cloning of a brittle culm mutant (bc88) in rice (Oryza sativa L.)	Chinese Science Bulletin	58	3000-3006	2013	BC6	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88
38884	24301915	Li C.R.a b, Liang D.D.a b, Xu R.F.a b, Li H.b c, Zhang Y.P.b, Qin R.Y.b, Li L.a b, Wei P.C.b c, Yang J.B.b	Overexpression of an alternative oxidase gene, OsAOX1a, improves cold tolerance in Oryza sativa L	Genetics and Molecular Research	12	5424-5432	2013		
38885	0	Jiang S.K.a b, Wang J.Y.c, Jiang H.a, Luo Y.a, Sun S.C.a, Zhang X.J.a b, Bai L.M.a, Chen W.F.c, Zhang F.M.a, Xu Z.J.c	Dissection of QTLs for panicle structure traits in rice (Oryza sativa L. spp. japonica)	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	1347-1354	2013		
38886	0	Zhang C.a b, Yin X.c, Gao K.c, Ge Y.b c, Cheng W.d	Non-protein thiols and glutathione S-transferase alleviate Cd stress and reduce root-to-shoot translocation of Cd in rice	Journal of Plant Nutrition and Soil Science	176	626-633	2013		
38887	0	Yu Q.a, Liu Z.a, Lin D.a, Zhang W.b, Sun Q.c, Zhu J.d, Lin M.b	Characterization and evaluation of Staphylococcus sp. strain LZ16 for the biological control of rice blast caused by Magnaporthe oryza	Biological Control	65	338-347	2013		
38888	0	Xue Y.a, Duan H.a, Liu L.a, Wang Z.a, Yang J.a, Zhang J.b	An improved crop management increases grain yield and nitrogen and water use efficiency in rice	Crop Sci.	53	271-284	2013		
38889	0	Liu Q.a, Wu X.a, Ma J.a, Li T.b, Zhou X.a, Guo T.a	Effects of high air temperature on rice grain quality and yield under field condition	Agron J	105	446-454	2013		
38890	23819293	Yu F.a c d, Liu K.b d d, Li M.a d c d, Zhou Z.a d c d, Deng H.a d c d, Chen B.a d c d	Effects of Cadmium on Enzymatic and Non-Enzymatic Antioxidative Defences of Rice (Oryza Sativa L.)	Int J Phytoremediation	15	513-521	2013		
38891	0	Yu G.H.a, Li W.a, Yuan Z.Y.a, Cui H.Y.a, Lv C.G.b, Gao Z.P.a, Han B.c, Gong Y.Z.d, Chen G.X.a	The effects of enhanced UV-B radiation on photosynthetic and biochemical activities in super-high-yield hybrid rice Liangyoupeijiu at the reproductive stage	Photosynthetica	51	33-44	2013		
38892	0	Li Y.a c, Ren B.a, Gao L.a, Ding L.a, Jiang D.b, Xu X.a, Shen Q.a, Guo S.a	Less Chlorophyll Does not Necessarily Restrain Light Capture Ability and Photosynthesis in a Chlorophyll-Deficient Rice Mutant	Journal of Agronomy and Crop Science	199	49-56	2013		
38893	0	Zhao D., Zhang C., Feng G., Yang Q., Gu M., Liu Q.	Hd-q, a novel allele of Ef7 from a Chinese rice landrace, confers weak photoperiod sensitivity and improves local adaptability and yield potential	Molecular Breeding	32	651-662	2013	HD3B	Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1
38894	23436553	Ding J., Mao L.J., Wang S.T., Yuan B.F., Feng Y.Q.	Determination of endogenous brassinosteroids in plant tissues using solid-phase extraction with double layered cartridge followed by high-performance liquid chromatography-tandem mass spectrometry	Phytochemical Analysis	24	386-394	2013		
38895	0	Chen Z.a c, Pan Y.H.b, An L.Y.a, Yang W.J.a, Xu L.G.a, Zhu C.a b	Heterologous expression of a halophilic archaeon manganese superoxide dismutase enhances salt tolerance in transgenic rice	Russian Journal of Plant Physiology	60	359-366	2013		
38896	0	Jin H., Chang Z.	The pollution way of microcystins and their bioaccumulation in terrestrial plants: A review	Shengtai Xuebao/ Acta Ecologica Sinica	33	3298-3310	2013		
38897	0	Li H.a b, Yang Y.b, Duan Y.b c, Li J.a b, Cong X.b, Ni D.a b, Song F.b c, Li L.b, Wei P.b, Yang J.b	Mapping QTLs for the tissue culture performance of rice mature embryo using indica-japonica recombinant inbred lines	Aust J Crop Sci	7	440-445	2013		
38898	0	Zeng Y.H.a b, Zhu Y.S.a b, Lian L.a b, Xie H.G.a b, Zhang J.F.a b, Xie H.A.a b	Genetic analysis and fine mapping of the pubescence gene GL6 in rice (Oryza sativa L.)	Chinese Science Bulletin	58	2992-2999	2013	_	GL6
38899	0	Song Y.a, Cui J.a, Zhang H.b, Wang G.a, Zhao F.J.c, Shen Z.a	Proteomic analysis of copper stress responses in the roots of two rice (Oryza sativa L.) varieties differing in Cu tolerance	Plant Soil	366	647-658	2013	_,_,_,TUBA3,_,GRX28,RCS1,_,GSTU2,_,_,GLYI-11,C3H21,TUBA1,_,_,_,GH3-10,APX1,_,_,_,RF1,_,RBBI3-3,APX2,RMC,_,TID1,HSP82B,PDC2,GSTL3	,,POD2, OsPOD2, PRX13, OSPRX13,OsTubA3, TubA3, OS-TubA1, TubA1,OsSAMS3, OsSAMS1, SAMS3, SAMS1,OsGRX28,rcs1,OsECS, ECS,OsGSTU2, ParC,OsFKII, OsFK1, FKII, FK1,PFP, OscPGM, cPGM,OsGLYI11, GLYI11, OsGLYII1.1, OsGLYI11.2, OsGLYI11.3, OsGLYI-11.2, Glb33,OsC3H21,OsTubA1, TubA1, OS-TubA3, TubA3,,,,OsGH3-10,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsPP2C30, PP2C30, OsPP48, PP48,OsAPRL2, APRL2,,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,OsSK31/OsGSK9, OsSK31, OsGSK9, SK31, GSK9,RBBI3-3, OsBBPI, BBPI,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsRMC, OsRLK, OsDUF26, DUF26,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10,OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, ,OsHSP82, hsp82B, HSP82,pdc2*, pdc2,OsGSTL3
38900	0	Zhang Q.J.a, Li C.b, Liu S.K.b, Lai D.b, Qi Q.M.a, Lu C.G.a	Breeding and Identification of Insect-Resistant Rice by Transferring Two Insecticidal Genes, sbk and sck	Rice Science	20	19-24	2013		
38901	24391034	Guo X.L.a, Bai L.R.a, Su C.Q.a, Shi L.R.a, Wang D.W.b	Molecular cloning and expression of drought-induced protein 3 (DIP3) encoding a class III chitinase in upland rice	Genetics and Molecular Research	12	6860-6870	2013	_	DIP3, XIP, OsHI-XIP, OsXIP2, XIP2
38902	24301783	Zeng Y.X., Wen Z.H., Ma L.Y., Ji Z.J., Li X.M., Yang C.D.	Development of 1047 insertion-deletion markers for rice genetic studies and breeding	Genetics and Molecular Research	12	5226-5235	2013		
38903	0	Long Q.a, Zhang W.a, Wang P.a, Shen W.a, Zhou T.a, Liu N.a, Wang R.a, Jiang L.a, Huang J.a, Wang Y.a, Liu Y.a, Wan J.a b	Molecular genetic characterization of rice seed lipoxygenase 3 and assessment of its effects on seed longevity	Journal of Plant Biology	56	232-242	2013		
38904	24341590	Wang X.a b, Liu Q.a b, Wang H.b, Luo C.X.c, Wang G.a, Luo M.b	A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens	BMC Genomics	14	883	2013		
38905	0	Zhao X.H.a b, Qin Y.c, Jia B.Y.a, Kim S.M.d, Lee H.S.b, Eun M.Y.b, Kim K.M.b, Sohn J.K.b	Comparison and Analysis of QTLs, Epistatic Effects and QTL~Environment Interactions for Yield Traits Using DH and RILs Populations in Rice	Journal of Integrative Agriculture	12	198-208	2013		
38906	0	Wang L.F., Chen Y.Y.	Characterization of a wide leaf mutant of rice Oryza sativa L. With high yield potential in field	Pak J Bot	45	927-932	2013		
38907	23557631	He B.a b, Huang X.a, Li D.a, Jiang C.a, Yu T.a, Yin F.a, Li W.a b, Cheng Z.a	The cDNA cloning of a novel bacterial blight-resistance gene ME137	Acta Biochim. Biophys. Sin. (Shanghai)	45	422-424	2013	_	OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA
38908	23659171	Feng H.a, Hou X.a, Li X.b, Sun K.a, Wang R.a, Zhang T.a, Ding Y.a	Cell death of rice roots under salt stress may be mediated by cyanide-resistant respiration	Zeitschrift fur Naturforschung - Section C Journal of Biosciences	68 C	39-46	2013		
38910	0	Wang Z.K.a, Huang Y.X.b, Miao Z.D.a, Hu Z.Y.a, Song X.Z.c, Liu L.a	Identification and characterization of BGL11(t), a novel gene regulating leaf-color mutation in rice (Oryza sativa L.)	Genes and Genomics	35	491-499	2013		
38911	0	Chen S., Zhang X., Zhao X., Wang D., Xu C., Ji C., Zhang X.	Response of rice nitrogen physiology to high nighttime temperature during vegetative stage	The Scientific World Journal	2013		2013		
38912	24280625	Pan S.a b, Rasul F.a c, Li W.a d, Tian H.a b, Mo Z.a b, Duan M.a b, Tang X.a b	Roles of plant growth regulators on yield, grain qualities and antioxidant enzyme activities in super hybrid rice (Oryza sativa L.)	Rice (N Y)	6	9	2013		
38913	0	Sun B.a c, Kong C.H.b, Wang P.a, Qu R.b	Response and relation of allantoin production in different rice cultivars to competing barnyardgrass	Plant Ecology	213	1917-1926	2013		
38914	0	Xu Y.Y.a b, Yan B.X.a, Zhu H.a	Leaf dew contributes nutrients to paddies and improves rice growth	Acta Agriculturae Scandinavica Section B: Soil and Plant Science	63	97-106	2013		
38915	0	Wang X., Hou C., Liu J., He W., Nan W., Gong H., Bi Y.	Hydrogen peroxide is involved in the regulation of rice (Oryza sativa L.) tolerance to salt stress	Acta Physiologiae Plantarum	35	891-900	2013		
38916	0	Xing J.a b, Jia Y.c, Correll J.C.d, Lee F.N.e, Cartwright R.d, Cao M.b, Yuan L.b	Analysis of genetic and molecular identity among field isolates of the rice blast fungus with an international differential system, rep-pcr, and dna sequencing	Plant Dis.	97	491-495	2013		
38917	0	Jiang Y.a, Huang S.a, Cai M.a, Li C.a, Kong X.a, Zhang F.a, Mohamed I.a b, Cao C.a	Yield changes of Bt-MH63 with cry1C* or cry2A* genes compared with MH63 (Oryza sativa) under different nitrogen levels	Field Crops Res.	151	101-106	2013		
38918	0	Liu H., Shen D., Jia S., Li W., Li J., Liu J., Han S., Wang Y.	Microarray-based screening of the microRNAs associated with caryopsis development in Oryza sativa	Biol. Plant.	57	255-261	2013		
38919	0	Feng G.N.a b, Zhang C.Q.a, Tang M.Y.a, Zhang G.Y.a, Xu C.W.a, Gu M.H.a, Liu Q.Q.a	Genetic analysis and gene cloning of a triangular hull 1 (tri1) mutant in rice (Oryza sativa L.)	Chinese Science Bulletin	58	2984-2991	2013	MADS32	OsMADS32, CFO1, CFO1/OsMADS32, TRI1, OsMADS32/CFO, CFO
38920	0	Zhang G.a, Cui Y.a, Ding X.a b, Dai Q.b	Stimulation of phenolic metabolism by silicon contributes to rice resistance to sheath blight	Journal of Plant Nutrition and Soil Science	176	118-124	2013		
38921	24065663	Qiu Y.F., Cheng L., Liu F., Li R.B.	Identification of a new locus conferring antixenosis to the brown planthopper in rice cultivar Swarnalata (Oryza sativa L.)	Genetics and Molecular Research	12	3201-3211	2013		
38922	0	Sun L.a, Ma D.a, Yu H.b, Zhou F.b, Li Y.a, Luo L.c, Gao G.a, Zhang Q.a, Xu C.a, He Y.a	Identification of quantitative trait loci for grain size.and the contributions of major grain-size QTLs to grain weight in rice	Molecular Breeding	31	451-461	2013		
38923	0	Li J.W.a b c, Zhang J.X.a b, Zhao Z.a b, Lei X.D.a b, Xu X.L.a b, Lu X.X.a b, Weng D.L.d, Gao Y.e, Cao L.K.a b	Use of fluorescence-based sensors to determine the nitrogen status of paddy rice	Journal of Agricultural Science	151	862-871	2013		
38924	24386120	Chen Z.a, Li F.a, Yang S.b, Dong Y.a, Yuan Q.b, Wang F.c, Li W.a, Jiang Y.d, Jia S.a, Pei X.a	Identification and functional analysis of flowering related microRNAs in common wild rice (Oryza rufipogon Griff.)	PLoS ONE	8		2013		
38925	0	Liu L.a, Zhu Y.a, Tang L.a, Cao W.a, Wang E.b	Impacts of climate changes, soil nutrients, variety types and management practices on rice yield in East China: A case study in the Taihu region	Field Crops Res.	149	40-48	2013		
38926	0	Cheng L.a b, Xu Q.b, Zheng T.b, Ye G.c, Luo C.a, Xu J.b, Li Z.b	Identification of stably expressed quantitative trait loci for grain yield and protein content using recombinant inbred line and reciprocal introgression line populations in rice	Crop Sci.	53	1437-1446	2013		
38927	0	Lin Q.T., Liang W.H., Li H., Zhang J.	Expression characteristic of rice Rop gene OsRac5	Zhiwu Shengli Xuebao/Plant Physiology Journal	49	1400-1406	2013		
38928	0	Song R.a b, Zhao C.Y.a b, Liu J.a b, Zhang J.a b, Du Y.X.a b, Li J.Z.a b, Sun H.Z.a b, Zhao H.B.c, Zhao Q.Z.a b	Effect of sulphate nutrition on arsenic translocation and photosynthesis of rice seedlings	Acta Physiologiae Plantarum	35	3237-3243	2013		
38929	0	Hu B.a b c, Wan Y.a, Li X.a, Zhang F.b, Yan W.d, Xie J.b	Phenotypic characterization and genetic analysis of rice with pubescent leaves and glabrous hulls (PLgh)	Crop Sci.	53	1878-1886	2013		
38931	0	Cheng L.R.a b, Luo C.G.a, Xu J.L.a b	QTL detection of amino acid content in grains of rice using advanced backcross introgression lines	Research on Crops	14	317-323	2013		
38932	0	Tang W.a b, Page M.b	Inducible expression of Norwalk virus capsid protein gene in plant cell suspension cultures	In Vitro Cellular and Developmental Biology - Plant	49	129-136	2013		
38933	0	Wang J.a, Lin X.a, Sun Q.a, Jena K.K.b	Evaluation of cold tolerance for japonica rice varieties from different country	Advance Journal of Food Science and Technology	5	54-56	2013		
38934	0	Huang L.a b, Du Y.S.a b, Zheng X.M.a, Liu R.a b, Zhou H.F.a, Ge S.a b	Nucleotide diversity of 11S seed storage protein gene and its implications for ecological adaptation of Oryza nivara	J Syst Evol	51	641-651	2013		
38935	24338404	Dong Y.B.a, Li F.a, Pei X.W.a, Wang F.b, Yuan Q.H.c, Wu H.J.d, Jia S.R.a, Peng Y.F.d	Genome-wide multilocus analysis of intraspecific differentiation in Oryza rufipogon Griff. from China and the influence of introgression from O. sativa L	Genetics and Molecular Research	12	6103-6119	2013		
38936	0	Mahmood K.a b e, Khan M.B.a c, Song Y.Y.a b, Ijaz M.d, Luo S.M.a b, Zeng R.S.a b	UV-irradiation enhances rice allelopathic potential in rhizosphere soil	Plant Growth Regul.	71	21-29	2013		
38937	0	Li Z.a, Song Z.a b c d, Parr J.F.e, Wang H.a b	Occluded C in rice phytoliths: Implications to biogeochemical carbon sequestration	Plant Soil	370	615-623	2013		
38938	0	Wada T.a, Yasui H.b, Inoue T.a, Tsubone M.a, Ogata T.a, Doi K.b c, Yoshimura A.b, Matsue Y.a b	Validation of QTLs for eating quality of japonica rice 'Koshihikari' using backcross inbred lines	Plant Prod. Sci.	16	131-140	2013		
38939	23774898	Giraldo M.C.a, Dagdas Y.F.b, Gupta Y.K.b, Mentlak T.A.b d, Yi M.a, Martinez-Rocha A.L.b e, Saitoh H.b, Terauchi R.c, Talbot N.J.b, Valent B.a	Two distinct secretion systems facilitate tissue invasion by the rice blast fungus Magnaporthe oryzae	Nat Commun	4	1996	2013		
38940	0	Suzuki T.a, Ohta T.a, Izumi Y.b, Kanyomeka L.c, Mwandemele O.c, Sakagami J.I.d, Yamane K.e, Iijima M.e	Role of canopy coverage in water use efficiency of Lowland rice in early growth period in semi-arid region	Plant Prod. Sci.	16	12-23	2013		
38941	0	Fukuda M., Nagumo F., Nakamura S., Tobita S.	Ineffectiveness of directly applied Burkina Faso phosphate rock on rice growth	Soil Sci. Plant Nutr.	59	403-409	2013		
38942	24166434	Higuchi-Takeuchi M.a, Mori M.b, Matsui M.a	High-throughput analysis of rice genes by means of the heterologous Full-length cDNA OvereXpressor (FOX)-hunting system	International Journal of Developmental Biology	57	517-523	2013		
38943	0	Rahman S.M.a, Kakuda K.I.b, Sasaki Y.c, Makabe-Sasaki S.b, Ando H.b	Early growth stage water management effects on the fate of inorganic N, growth and yield in rice	Soil Sci. Plant Nutr.	59	921-932	2013		
38944	23683923	Ashikawa I., Abe F., Nakamura S.	DOG1-like genes in cereals: Investigation of their function by means of ectopic expression in Arabidopsis	Plant Science	208	1-9	2013		
38945	23830635	Ishikawa T.a, Uchimiya H.b, Kawai-Yamada M.b	The role of plant Bax inhibitor-1 in suppressing H2O 2-induced cell death	Meth. Enzymol.	527	239-256	2013		
38946	0	Nagumo T., Tajima S., Chikushi S., Yamashita A.	Phosphorus balance and soil phosphorus status in paddy rice fields with various fertilizer practices	Plant Prod. Sci.	16	69-76	2013		
38947	0	Makabe-Sasaki S., Kakuda K.I., Sasaki Y., Ando H.	Effect of slag silicate fertilizer on dissolved silicon in soil solution based on the chemical properties of Gleysols	Soil Sci. Plant Nutr.	59	271-277	2013		
38948	0	Pasuquin E.M.a b, Hasegawa T.c, Eberbach P.a, Reinke R.a d, Wade L.J.a, Lafarge T.b e	Responses of eighteen rice (Oryza sativa L.) cultivars to temperature tested using two types of growth chambers	Plant Prod. Sci.	16	217-225	2013		
38949	0	Yoshinaga S.a, Takai T.b, Arai-Sanoh Y.b, Ishimaru T.c, Kondo M.b	Varietal differences in sink production and grain-filling ability in recently developed high-yielding rice (Oryza sativa L.) varieties in Japan	Field Crops Res.	150	74-82	2013		
38950	0	Ohdaira Y.a, Sasaki R.b, Takeda H.c	Analysis of factors affecting seed protein compositions and protein contents in rice of seed-protein mutant cultivars under different cropping seasons	Japanese Journal of Crop Science	82	18-27	2013		
38951	0	Sakagami J.I., Joho Y., Sone C.	Complete submergence escape with shoot elongation ability by underwater photosynthesis in African rice, Oryza glaberrima Steud	Field Crops Res.	152	17-26	2013		
38952	0	Kawahara Y.a, de la Bastide M.b, Hamilton J.P.c, Kanamori H.a, McCombie W.R.b, Ouyang S.d, Schwartz D.C.e, Tanaka T.a, Wu J.a, Zhou S.e, Childs K.L.c, Davidson R.M.c f, Lin H.c g, Quesada-Ocampo L.c, Vaillancourt B.c, Sakai H.a, Lee S.S.a, Kim J.a, Numa H.a, Itoh T.a, Buell C.R.c, Matsumoto T.a	Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data	Rice (N Y)	6	4	2013		
38953	0	Okamura M.a, Hirose T.a b, Hashida Y.a, Yamagishi T.a, Ohsugi R.a, Aoki N.a	Starch reduction in rice stems due to a lack of OsAGPL1 or OsAPL3 decreases grain yield under low irradiance during ripening and modifies plant architecture	Functional Plant Biology	40	1137-1146	2013		
38954	0	Xu M.a, Li D.a, Li J.a, Qin D.a, Hosen Y.b, Shen H.a, Cong R.a, He X.a c d	Polyolefin-coated urea decreases ammonia volatilization in a double rice system of southern china	Agron J	105	277-284	2013		
38955	0	Ueda A.a, Yahagi H.a, Fujikawa Y.a, Nagaoka T.a, Esaka M.a, Calca?o M.b, Gonz?lez M.M.b, Hern?ndez Martich J.D.b, Saneoka H.a	Comparative physiological analysis of salinity tolerance in rice	Soil Sci. Plant Nutr.	59	896-903	2013		
38956	0	Matsushita K.a b c, Iida S.a, Ideta O.a, Ishii T.a, Fujimoto H.a, Watanabe H.b, Takahashi Y.b	Effect of low planting density on the spikelet number in 'Tachisuzuka', a rice (Oryza sativa L.) cultivar with a short panicle for whole crop silage use	Grassland Science	59	124-127	2013		
38957	0	Tawaraya K.a, Horie R.a, Saito A.a, Shinano T.b, Wagatsuma T.a, Saito K.c, Oikawa A.c	METABOLITE PROFILING OF SHOOT EXTRACTS, ROOT EXTRACTS, AND ROOT EXUDATES OF RICE PLANT UNDER PHOSPHORUS DEFICIENCY	J Plant Nutr	36	1138-1159	2013		
38958	0	Ma J.a, Ji Y.a c, Zhang G.a, Xu H.a, Yagi K.b	Timing of midseason aeration to reduce CH4 and N2O emissions from double rice cultivation in China	Soil Sci. Plant Nutr.	59	35-45	2013		
38959	0	Lu C.a, Liu J.a, Jiang J.H.a, Breria C.M.a, Tan H.L.a, Ichii M.b, Hong D.L.a	Development and application of SCAR markers for discriminating cytoplasmic male sterile lines from their cognate maintainer lines in indica rice	Rice Science	20	191-199	2013		
38960	0	Ujiie K., Ishimaru K.	Identification of chromosome regions affecting leaf area with rice chromosome segment substitution lines	Plant Prod. Sci.	16	31-36	2013		
38961	0	Kobayashi N.I.a, Iwata N.a, Saito T.a, Suzuki H.b, Iwata R.c, Tanoi K.a, Nakanishi T.M.a	Different magnesium uptake and transport activity along the rice root axis revealed by 28Mg tracer experiments*	Soil Sci. Plant Nutr.	59	149-155	2013		
38962	0	Koshiba T.a, Murakami S.a, Hattori T.a e, Mukai M.a, Takahashi A.b, Miyao A.b, Hirochika H.b, Suzuki S.a, Sakamoto M.c, Umezawa T.a d	CAD2 deficiency causes both brown midrib and gold hull and internode phenotypes in Oryza sativa L. cv. Nipponbare	Plant Biotechnology	30	365-373	2013		
38963	0	Ashida K.a, Araki E.a c, Maruyama-Funatsuki W.a, Fujimoto H.b, Ikegami M.b	Temperature during grain ripening affects the ratio of type-II/type-I protein body and starch pasting properties of rice (Oryza sativa L.)	J. Cereal Sci.	57	153-159	2013		
38965	0	Koumoto T.a, Shimada H.a b, Kusano H.a, She K.C.b, Iwamoto M.c, Takano M.c	Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase	Plant Biotechnology	30	47-56	2013	MOC2,_,D17	FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1,OsPFPA2, PFPA2,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17
38967	0	Koide Y.a b, Telebanco-Yanoria M.J.a b, Fukuta Y.a, Kobayashi N.a b c	Detection of novel blast resistance genes, Pi58(t) and Pi59(t), in a Myanmar rice landrace based on a standard differential system	Molecular Breeding	32	241-252	2013	PI58,PI59	Pi58(t),Pi59(t)
38968	0	Ishizaki T.a, Maruyama K.b, Obara M.b, Fukutani A.a, Yamaguchi-Shinozaki K.b c, Ito Y.b, Kumashiro T.b d	Expression of Arabidopsis DREB1C improves survival, growth, and yield of upland New Rice for Africa (NERICA) under drought	Molecular Breeding	31	255-264	2013		
38969	0	Kobayakawa H., Imai K.	Inclination angle affects ozone injury in the flag leaf of Rice	Plant Prod. Sci.	16	24-30	2013		
38970	0	Mizobuchi R.a, Sato H.b, Fukuoka S.a, Tanabata T.a c, Tsushima S.d, Imbe T.e, Yano M.f	Mapping a quantitative trait locus for resistance to bacterial grain rot in rice	Rice (N Y)	6	13	2013		
38971	0	Sasaki K.a b, Takahashi H.c d, Kojima S.e, Uchimiya H.c, Sato T.a	Metabolic alterations in free amino acid contents of rice (Oryza sativa l.) seeds during high-humidity storage	Research Journal of Seed Science	6	16-23	2013		
38972	0	Nguyen N.M.T.a b, Hoang L.H.a b, Furuya N.a c, Tsuchiya K.a c, Nguyen T.T.T.a b d	Quantitative trait loci (QTLs) associated with drought tolerance in vietnamese local rice (Oryza sativa L.)	Journal of the Faculty of Agriculture, Kyushu University	58	1-6	2013		
38973	24025801	Ueda M.a, Takami T.a b, Peng L.a d, Ishizaki K.c e, Kohchi T.c, Shikanai T.a, Nishimura Y.a	Subfunctionalization of sigma factors during the evolution of land plants based on mutant analysis of liverwort (Marchantia polymorpha L.) MpSIG1	Genome Biol Evol	5	1836-1848	2013		
38974	0	Matsushita A.a, Inoue H.a, Goto S.a, Nakayama A.a b, Sugano S.a, Hayashi N.a, Takatsuji H.a	Nuclear ubiquitin proteasome degradation affects WRKY45 function in the rice defense program	Plant Journal	73	302-313	2013		
38975	0	Hayano M., Fumoto T., Yagi K., Shirato Y.	National-scale estimation of methane emission from paddy fields in Japan: Database construction and upscaling using a process-based biogeochemistry model	Soil Sci. Plant Nutr.	59	812-823	2013		
38977	0	Mishima S.I.a, Kimura S.D.b, Eguchi S.a, Shirato Y.a	Changes in soil available-nutrient stores and relationships with nutrient balance and crop productivity in Japan	Soil Sci. Plant Nutr.	59	371-379	2013		
38978	24399907	Kubo T.a b	Genetic mechanisms of postzygotic reproductive isolation: An epistatic network in rice	Breed. Sci.	63	359-366	2013		
38979	0	Sudianto E.a, Beng-Kah S.a, Ting-Xiang N.b, Saldain N.E.c, Scott R.C.d, Burgos N.R.e	Clearfield? rice: Its development, success, and key challenges on a global perspective	Crop Protection	49	40-51	2013		
38980	0	Arai-Sanoh Y.a, Ida M.a b, Zhao R.a c, Nishitani K.d, Yoshinaga S.a e, Takai T.a, Nakano H.a, Iwasawa N.a, Kondo M.a	Varietal differences in cell wall beta-(13),(14)-glucan and nonstructural carbohydrate in rice stems during the grain filling stage	Plant Prod. Sci.	16	335-341	2013		
38981	0	Koide Y.a, Pariasca Tanaka J.b, Rose T.a, Fukuo A.a, Konisho K.a, Yanagihara S.a, Fukuta Y.a, Wissuwa M.a	Qtls for phosphorus deficiency tolerance detected in upland nerica varieties	Plant Breeding	132	259-265	2013		
38982	0	Xuan T.D.a, Toyama T.b, Khanh T.D.c, Tawata S.d, Nakagoshi N.a	Allelopathic interference of sweet potato with cogongrass and relevant species	Plant Ecology	213	1955-1961	2013		
38983	23888867	Xia J., Yamaji N., Ma J.F.	A plasma membrane-localized small peptide is involved in rice aluminum tolerance	Plant J. 	76	345-355	2013	CDT5,ART1,CDT1,CDT3,CDT4,CDT2	OsCDT5,ART1, STAR3,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsCDT3,OsCDT4,OsCDT2
38984	0	Shirasawa K.a d, Sekii T.a, Ogihara Y.a, Yamada T.a, Shirasawa S.a, Kishitani S.a, Sasaki K.b, Nishimura M.c, Nagano K.b, Nishio T.a	Identification of the chromosomal region responsible for high-temperature stress tolerance during the grain-filling period in rice	Molecular Breeding	32	223-232	2013		
38985	0	Khin O.M.a, Sato M.b, Li-Tao T.a, Matsue Y.b, Yoshimura A.b, Mochizuki T.b	Close association between aleurone traits and lipid contents of rice grains observed in widely different genetic resources of Oryza sativa	Plant Prod. Sci.	16	41-49	2013		
38986	0	Ashikawa I.a, Ishikawa R.b	A population genetics-based approach reveals candidate gene regions important in the determination of resistance specificity for the Pik family of rice blast resistance genes	Journal of General Plant Pathology	79	178-181	2013		
38987	0	Sato H.a, Shimizu T.b, Kawai K.b, Kaku K.b, Arakawa A.a, Tachibana T.c, Takamizo T.a	Herbicide-resistant tall fescue with cytoplasmic male sterility selected by a mutated rice acetolactate synthase gene	Crop Sci.	53	201-207	2013		
38988	0	Adachi Y.a, Kimura K.b, Saigusa M.c, Takahashi Y.a, Ohyama T.a, Watanabe H.a	Growth promotion of rice (Oryza sativa L.) seedlings by application of L-beta-phenyllactic acid	Asian Journal of Plant Sciences	12	87-91	2013		
38989	0	Lee M.S.a, Kang B.M.a, Lee J.E.a, Choi W.J.b, Ko J.a, Choi J.E.c, An K.N.d, Kwon O.D.d, Park H.G.d, Shin H.R.d, Lee I.d, Kim J.K.d, Kim H.Y.a	How do extreme wet events affect rice quality in a changing climate?	Agriculture, Ecosystems and Environment	171	47-54	2013		
38990	24511713	Borges Bevilacqua C.a, Ramirez Monzon D.a, Venske E.a, Basu S.b, Paulo Zimmer D.a	Application of stress indices for low temperature and deep sowing stress screening of rice genotypes	Pakistan Journal of Biological Sciences	16	1618-1622	2013		
38991	0	Schaedler C.E.a, Noldin J.A.b, Eberhardt D.S.b, Agostinetto D.c, Burgos N.R.d	Globe fringerush (fimbristylis miliacea) cross resistance to ALS-inhibitor herbicides under field conditions in irrigated rice in the south of Brazil [Resist?ncia cruzada de herbicidas inibidores da ALS em cuminho (fimbristylis miliacea) sob condi??es de campo em lavouras de arroz irrigado no sul do Brasil]	Planta Daninha	31	893-902	2013		
38992	0	Samonte S.O.P.B.a, Tabien R.E.b, Wilson L.T.b	Parental Selection in Rice Cultivar Improvement	Rice Science	20	45-51	2013		
38993	0	Quezada C., Herna?z S., Vidal I., Alvarado R., Gallegos R., Ya?ez W.	Selection of rice genotypes (Oryza sativa) with high nitrogen agronomic efficiency in an Acuic Durixererts soil, central-southern Chile [Selecci?n de genotipos de arroz (oryza sativa l.) con alta ef ciencia agron?mica de nitr?geno en un suelo acuic durixererts, en la zona centro - sur de Chile]	Ciencia e Investigacion Agraria	40	375-386	2013		
38994	0	Tavares L.C., Fonseca D.A.R., Brunes A.P., Rufino C.A., Meneguello G.E., Barros A.C.S.A.	Performance of rice seeds treated with zinc, boron, and molybdenum [Desempenho de sementes de arroz tratadas com zinco, boro e molibd?nio]	Journal of Seed Science	35	532-539	2013		
38995	0	Shariatmadari Z.a, Riahi H.a, Seyed Hashtroudi M.b, Ghassempour A.c, Aghashariatmadary Z.d	Plant growth promoting cyanobacteria and their distribution in terrestrial habitats of Iran	Soil Sci. Plant Nutr.	59	535-547	2013		
38996	0	Morales-Ortega A.a, Ni?o-Medina G.b, Carvajal-Mill?n E.a, Gardea-B?jar A.c, Torres-Ch?vez P.d, L?pez-Franco Y.a, Rasc?n-Chu A.a, Lizardi-Mendoza J.a	Ferulated arabinoxylans from cereals. A review of their physico-chemical characteristics and gelling capability [Los arabinoxilanos ferulados de cereales. Una revisi?n de sus caracter?sticas fisicoqu?micas y capacidad gelificante]	Revista Fitotecnia Mexicana	36	439-446	2013		
38997	0	Sanes F.S.M.a, Castilhos R.M.V.b, Scivittaro W.B.c, Vahl L.C.b, de Morais J.R.b	Root morphology and potassium uptake kinetic parameters in irrigated rice genotypes [Morfologia de ra?zes e cin?tica de absor??o de pot?ssio em gen?tipos de arroz irrigado]	Rev. Bras. Cienc. Solo	37	688-697	2013		
38998	0	Schaedler C.E.a, Noldin J.A.b, Agostinetto D.c, Dal Magro T.d, Fontana L.C.c	Germination and growth of Fimbristylis miliacea biotypes resistant and susceptible to acetolactate synthase-inhibiting herbicides [Germina??o e crescimento de bi?tipos de Fimbristylis miliacea resistente e suscet?vel aos herbicidas inibidores da enzima acetolactato sintase]	Planta Daninha	31	687-694	2013		
38999	0	Montcho D.a b, Futakuchi K.a, Agbangla C.b, Semon M.c, Dieng I.a, Sie M.a	Morphological and phenological response of African rice (Oryza glaberrima steud.) under different hydrological conditions	Asian Journal of Plant Sciences	12	79-86	2013		
39000	0	Kanawapee N.a, Sanitchon J.b, Srihaban P.c, Theerakulpisut P.a	Physiological changes during development of rice (Oryza sativa L.) varieties differing in salt tolerance under saline field condition	Plant Soil	370	89-101	2013		
39001	0	Streck N.A., Uhlmann L.O., Gabriel L.F.	Leaf development of cultivated rice and weedy red rice under elevated temperature scenarios [Desenvolvimento foliar de arroz cultivado e arroz vermelho EM cen?rios de aumento de temperatura]	Revista Brasileira de Engenharia Agricola e Ambiental	17	190-199	2013		
39002	0	Guimar?es C.M.a, Stone L.F.a, Rangel P.H.N.a, Silva A.C.L.b	Tolerance of upland rice genotypes to water deficit [Toler?ncia ? defici?ncia h?drica de gen?tipos de arroz de terras altas]	Revista Brasileira de Engenharia Agricola e Ambiental	17	805-810	2013		
39003	0	Kaloumenos N.S.a c, Capote N.b, Aguado A.b, Eleftherohorinos I.G.a	Red rice (Oryza sativa) cross-resistance to imidazolinone herbicides used in resistant rice cultivars grown in northern Greece	Pestic Biochem Physiol	105	177-183	2013		
39004	0	da Silva L.P.a, Mendon?a Alves B.b, Da Silva L.S.c, Pocojeski E.d, Andr? Kaminski T.e, Sampaio Roberto B.d	Nitrogen fertilization on industrial yield and composition of food-irrigated rice grains [Aduba??o nitrogenada sobre rendimento industrial e composi??o dos gr?os de arroz irrigado]	Ciencia Rural	43	1128-1133	2013		
39005	0	G?ria M.M.a, Ghini R.b, Bettiol W.b	Elevated atmospheric CO2 concentration increases rice blast severity	Trop Plant Pathol	38	253-257	2013		
39006	0	Beber-Rodrigues M., Scussel V.M.	Mycoflora and mycotoxicological quality of four freshly harvested paddy rice cultivars and relation with harvest to industry reception timing	Rice Science	20	303-308	2013		
39007	0	Terra T.G.R.a, Leal T.C.A.B.b, Bor?m A.a, Rangel P.H.N.c	Upland rice tolerance to drought [Toler?ncia de linhagens de arroz de terras altas ? seca]	Pesquisa Agropecuaria Tropical	43	201-208	2013		
39008	0	Mingotte F.L.C.a, Hanashiro R.K.b, Filho D.F.b	Response of rice cultivars to nitrogen in upland conditions	Revista Ceres	60	86-95	2013		
39009	24511695	Hussain H.a, Yusoff M.K.b, Ramli M.F.b, Latif P.A.b, Juahir H.b, Zawawi M.A.M.c	Temporal patterns and source apportionment of nitrate-nitrogen leaching in a paddy field at Kelantan, Malaysia	Pakistan Journal of Biological Sciences	16	1524-1530	2013		
39010	0	Vogel G.F.a, Martinkoski L.b, Martins P.J.c, Bichel A.d	Agronomic performance of Azospirillum brasilense in rice culture: A review [Desempenho agron?mico de Azospirillum brasilense na cultura do arroz: uma revis?o]	Revista em Agronegocio e Meio Ambiente	6	567-578	2013		
39011	0	Macedo W.R., Ara?jo D.K., Castro P.R.D.C.E.	Unravelling the physiologic and metabolic action of thiamethoxam on rice plants	Pestic Biochem Physiol	107	244-249	2013		
39012	0	Dallagnol L.J.a, Rodrigues F.?.a, Chaves A.R.M.b, Vale F.X.R.a, Damatta F.M.b	Photosynthesis and sugar concentration are impaired by the defective active silicon uptake in rice plants infected with Bipolaris oryzae	Plant Pathol.	62	120-129	2013		
39013	0	?anculao G.D.a, C?rcamo M.P.a, de los Santos O.A.b, Vel?squez V.B.a	cold tolerance evaluation in Chilean rice genotypes at the germination stage	Chilean Journal of Agricultural Research	73	3-8	2013		
39014	0	Chauhan B.S.	Effect of Shade on Growth and Yield of Weedy Rice (Oryza sativa L.) Biotypes and a Rice (Oryza sativa L.) Cultivar from Asia	Journal of Crop Improvement	27	272-280	2013		
39015	0	Sartori G.M.S.a, Marchesan E.b, Azevedo C.F.b, Filho A.C.b, Roso R.b, Coelho L.L.b, Oliveira M.L.b	Effects of irrigated rice sowing season and imazapyr + imazapic time of application on rice grain yield and red rice management [Efeito da ?poca de semeadura de arroz irrigado e do momento de aplica??o de imazapyr+imazapic no rendimento de gr?os de arroz e no manejo do arroz-vermelho]	Planta Daninha	31	631-644	2013		
39016	0	Westendorff N.R., Agostinetto D., Ulguim A.R., Langaro A.C., Th?rmer L.	Initial growth and competitive ability of yellow nutsedge and irrigated rice [crescimento inicial e habilidade competitiva de tiririca-amarela e arroz irrigado]	Planta Daninha	31	813-821	2013		
39017	0	Julia C.a, Dingkuhn M.a b	Predicting temperature induced sterility of rice spikelets requires simulation of crop-generated microclimate	European Journal of Agronomy	49	50-60	2013		
39018	0	Sena A.P.A.a, Chaibub A.A.a, C?rtes M.V.C.B.b, Silva G.B.c, Silva-Lobo V.L.b, Prabhu A.S.b, Filippi M.C.C.b, Ara?jo L.G.a	Increased enzymatic activity in rice leaf blast suppression by crude extract of Epicoccum sp	Trop Plant Pathol	38	387-397	2013		
39019	0	Menezes V.G.a, Kalsing A.a, Mariot C.H.P.b, Grohs D.S.b, Freitas T.F.S.a	Reduction of seed production of red rice escapes in clearfield rice [Redu??o da produ??o de sementes de escapes de plantas de arroz-vermelho em arroz clearfield]	Planta Daninha	31	919-928	2013		
39020	0	Echeverr?a A.L.a, Carmona M.A.b, Guti?rrez S.A.a	Transmission of Trichoconiella padwickii to rice coleoptiles [Transmisi?n de Trichoconiella padwickii a cole?ptilos de arroz]	Trop Plant Pathol	38	346-348	2013		
39021	0	Puteh A.B.a, Saragih A.A.a, Ismail M.R.a, Mondal M.M.A.a b	Chlorophyll fluorescence parameters of cultivated (Oryza sativa L. ssp. indica) and weedy rice (Oryza sativa L. var. nivara) genotypes under water stress	Aust J Crop Sci	7	1277-1283	2013		
39022	0	Seesang J., Sripicchitt P., Somchit P., Sreewongchai T.	Genotypic correlation and path coefficient for some agronomic traits of hybrid and inbred rice (Oryza sativa L.) cultivars	Asian Journal of Crop Science	5	319-324	2013		
39023	0	Boldrin P.F.a, Faquin V.a, Ramos S.J.a, Boldrin K.V.F.b, ?vila F.W.a, Guilherme L.R.G.a	Soil and foliar application of selenium in rice biofortification	Journal of Food Composition and Analysis	31	238-244	2013		
39024	0	Schurt D.A., Rodrigues F.A., Souza N.F.A., Reis R.D.	Efficiency of different molecules on the reduction of sheath blight symptoms in rice and on Rhizoctonia solani growth in vitro [Efici?ncia de diferentes mol?culas na redu??o dos sintomas da queima das bainhas em arroz e no crescimento de Rhizoctonia solani in vitro]	Revista Ceres	60	221-225	2013		
39025	0	Lopes R.A.a, Buzetti S.b, Teixeira Filho M.C.M.b, Sabin Benett C.G.c, Arf M.V.d	Doses, sources and application times of nitrogen on rice grown in no tillage system [Doses, fontes e ?pocas de aplica??o de nitrog?nio em arroz de terras altas cultivado em sistema de semeadura direta]	Revista Caatinga	26	79-87	2013		
39026	0	Bhatia P.a b, Jain R.K.a, Chowdhury V.K.a	Genetic variability, correlation and path coefficient analysis for grain yield and its components in Rice (Oryza sativa L.) Genotypes	Ann Biol	29	282-287	2013		
39027	0	Mathew R., Raj S.K., Jose N., Leenakumary S.	Comparative efficacy of penoxsulam and pyrazosulfuron ethyl for weed control in direct - Seeded puddle rice (Oryza sativa)	Indian Journal of Agricultural Sciences	83	1420-1422	2013		
39028	0	Singh A.K.a, Meena M.K.a, Bharati R.C.a, Gade R.M.a b	Effect of sulphur and zinc management on yield, nutrient uptake, changes in soil fertility and economics in rice (Oryza sativa)-lentil (Lens culinaris) cropping system	Indian Journal of Agricultural Sciences	83	344-348	2013		
39029	0	Anitha Vasline Y.	Chlorophyll and viable mutations in rice (Oryza sativa L.)	Plant Archives	13	531-533	2013		
39030	0	Anitha Vasline Y.	An investigation on induced mutations in rice (Oryza sativa L.)	Plant Archives	13	555-557	2013		
39031	0	Jha Y.a, Subramanian R.B.b	Paddy plants inoculated with PGPR show better growth physiology and nutrient content under saline conditions	Chilean Journal of Agricultural Research	73	213-219	2013		
39032	0	Satheeshkumar P., Saravanan K.	Genetic divergence, variability and correlation studies in rice (Oryza sativa L.)	Plant Archives	13	369-373	2013		
39033	0	Prasannakumar N.R.a, Chander S.a, Sahoo R.N.b, Gupta V.K.b	Assessment of Brown Planthopper, (Nilaparvata lugens) [St?l], damage in rice using hyperspectral remote sensing	International Journal of Pest Management	59	180-188	2013		
39034	0	Singh K.a, Singh S.R.a, Singh J.K.a b, Rathore R.S.a b, Singh S.P.a, Roy R.a	Effect of age of seedling and spacing on yield, economics, soil health and digestibility of rice (Oryza sativa) genotypes under system of rice intensification	Indian Journal of Agricultural Sciences	83	479-483	2013		
39035	0	Devkota K.P.a, Manschadi A.M.b, Lamers J.P.A.c, Humphreys E.d, Devkota M.a, Egamberdiev O.e, Gupta R.K.f, Sayre K.D.g, Vlek P.L.G.c	Growth and yield of rice (Oryza sativa L.) under resource conservation technologies in the irrigated drylands of Central Asia	Field Crops Res.	149	115-126	2013		
39036	0	Sawant V.a, Patil A.a, Kelkar B.a, Narangalkar A.b	Bio-efficacy of insecticides against caseworm Nymphula depunctalis Guenee (Pyralidae: Lepidoptera) of rice Oryza sativa L.	Pestology	37	26-29	2013		
39037	0	Jha Y.a, Subramanian R.B.b	Paddy physiology and enzymes level is regulated by rhizobacteria under saline stress	Journal of Applied Botany and Food Quality	85	168-173	2013		
39038	0	Hasan M.a b, Sarker R.H.a c	In vitro selection for NaCl salt tolerance in aromatic rice (Oryza sativa) genotypes	Indian Journal of Agricultural Sciences	83	1221-1226	2013		
39039	0	Chattopadhyay K., Nath D., Das G., Mohanta R.L., Marndi B.C., Singh D.P., Sarkar R.K., Singh O.N.	Phenotyping and QTL-linked marker-based genotyping of rice lines with varying level of salt tolerance at flowering stage	Indian Journal of Genetics and Plant Breeding	73	434-437	2013		
39040	0	Gaind S.a, Singh Y.V.b	Soil Organic Carbon in Relation to Nutrient Regimes and Crop Rotation Under Rice-Based Cropping System	Journal of Crop Improvement	27	170-185	2013		
39041	0	Singh A.K.a, Singh A.K.a, Mall A.K.b, Singh P.K.b	Analysis of correlation and path coefficients among yield and biochemical traits under irrigated and reproductive stage drought stress in Oryza sativa L.	Vegetos	26	50-57	2013		
39042	0	Singh S.D.a, Chakrabarti B.a, Muralikrishna K.S.a, Chaturvedi A.K.a, Kumar V.a, Mishra S.a, Harit R.a b	Yield response of important field crops to elevated air temperature and CO2 level	Indian Journal of Agricultural Sciences	83	1009-1012	2013		
39043	0	Kaushal P., Sharma H.K.	Convective dehydration kinetics of noodles prepared from taro (Colocasia esculenta), rice (Oryza sativa) and pigeonpea (Cajanus cajan) flours	Agricultural Engineering International: CIGR Journal	15	202-212	2013		
39044	24494531	Rakshit A.	Pest and disease tolerance in rice cv Pusa Basmati as related to different locally available organic manures grown in new alluvail region of West Bengal, India	Pakistan Journal of Biological Sciences	16	593-597	2013		
39045	0	Mohanty M.a, Nanda S.S.a, Barik A.K.a b	Effect of integrated nutrient management on growth, yield, nutrient uptake and economics of wet season rice (Oryza sativa) in Odisha	Indian Journal of Agricultural Sciences	83	599-604	2013		
39046	0	Manjunath K.B., Padmanabhan M., Shamaraj, Suresh Naik K.P., Hanumanthappa M.	Effect of weed control treatments on grain yield, nutrient uptake and soil microflora in transplanted rice (Oryza sativa L.) in coastal Karnataka, India	Plant Archives	13	521-525	2013		
39047	24199713	Wonni I., Cottyn B., Detemmerman L., Dao S., Ouedraogo L., Sarra S., Tekete C., Poussier S., Corral R., Triplett L., Koita O., Koebnik R., Leach J., Szurek B., Maes M., Verdier V.	Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity.	Phytopathology	104(5)	520-31	2014		
39048	24158358	Dang T.T., Shimatani Z., Kawano Y., Terada R., Shimamoto K.	Gene Editing a Constitutively Active OsRac1 by Homologous Recombination-Based Gene Targeting Induces Immune Responses in Rice.	Plant Cell Physiol.	54(12)	2058-70	2013		
39049	23807236	Li X., Li P., Zhang Q., Li R., Zhang W., Zhang Z., Ding X., Tang X.	Multi-component immunochromatographic assay for simultaneous detection of aflatoxin B1, ochratoxin A and zearalenone in agro-food.	Biosens Bioelectron	49	426-32	2013		
39050	24236092	Luo X., Gao Z., Shi T., Cheng Z., Zhang Z., Ni Z.	Identification of miRNAs and Their Target Genes in Peach (Prunus persica L.) Using High-Throughput Sequencing and Degradome Analysis.	PLoS ONE	8(11)	e79090	2013		
39051	24265739	Xu R., Zhang S., Huang J., Zheng C.	Genome-Wide Comparative In Silico Analysis of the RNA helicase Gene Family in Zea mays and Glycine max: A Comparison with Arabidopsis and Oryza sativa.	PLoS ONE	8(11)	e78982	2013		
39052	24253199	Arenhart R.A., Bai Y., Oliveira L.F., Neto L.B., Schunemann M., Maraschin F.D., Mariath J., Silverio A., Sachetto-Martins G., Margis R., Wang Z.Y., Margis-Pinheiro M.	New insights into aluminum tolerance in rice: ASR5 protein binds in the STAR1 promoter and other aluminum responsive genes.	Mol Plant	7(4)	709-21	2014	MT1G,STAR1,_,ASR5	OsMT1g, MT1g, MT1Le, OsMT1Le ,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsFRDL4, FRDL4, MATE,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
39053	24237627	Wang L., Shen R., Chen L., Liu Y.G.	Characterization of a novel DUF1618 gene family in rice.	J Integr Plant Biol	56(2)	151-8	2014		
39054	24209631	Joo J., Choi H.J., Lee Y.H., Lee S., Lee C.H., Kim C.H., Cheong J.J., Choi Y.D., Song S.I.	Over-expression of BvMTSH, a fusion gene for maltooligosyltrehalose synthase and maltooligosyltrehalose trehalohydrolase, enhances drought tolerance in transgenic rice.	BMB Rep	47(1)	27-32	2014		
39055	24214894	Jacquemin J., Ammiraju J.S., Haberer G., Billheimer D.D., Yu Y., Liu L.C., Rivera L.F., Mayer K., Chen M., Wing R.A.	15 MYA of evolution in the Oryza genus shows extensive gene family expansion.	Mol Plant	7(4)	642-56	2014		
39056	24231918	Zhang M., Pinson S.R., Tarpley L., Huang X.Y., Lahner B., Yakubova E., Baxter I., Guerinot M.L., Salt D.E.	Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain.	Theor. Appl. Genet.	127(1)	137-65	2014		
39057	24193246	Nunes O.C., Lopes A.R., Manaia C.M.	Microbial degradation of the herbicide molinate by defined cultures and in the environment.	Appl. Microbiol. Biotechnol.	97(24)	10275-91	2013		
39058	24279930	Berikten D., Kivanc M.	OPTIMIZATION OF SOLID STATE FERMENTATION FOR PHYTASE PRODUCTION BY THERMOMYCES LANUGINOSUS USING RESPONSE SURFACE METHODOLOGY.	Prep. Biochem. Biotechnol.	44(8)	834-48	2014		
39059	24214893	Kong L., Wu J., Lu L., Xu Y., Zhou X.	Interaction between Rice stripe virus disease-specific protein and host PsbP enhances virus symptoms.	Mol Plant	7(4)	691-708	2014	PSBP	PsbP, OsPsbP, psbP
39060	24148412	Zhang H.X., Chen J.B., Guo X.F., Wang H., Zhang H.S.	Highly sensitive determination of nitric oxide in biologic samples by a near-infrared BODIPY-based fluorescent probe coupled with high-performance liquid chromatography.	Talanta	116	335-42	2013		
39061	24231122	Al Atalah B., Vanderschaeghe D., Bloch Y., Proost P., Plas K., Callewaert N., Savvides S.N., Van Damme EJ.	Characterization of a type D1A EUL-related lectin from rice expressed in Pichia pastoris.	Biol. Chem.	395(4)	413-24	2014		
39062	24201892	Arends J.B., Speeckaert J., Blondeel E., De Vrieze J., Boeckx P., Verstraete W., Rabaey K., Boon N.	Greenhouse gas emissions from rice microcosms amended with a plant microbial fuel cell.	Appl. Microbiol. Biotechnol.	98(7)	3205-17	2014		
39063	24223754	Wang M., Hashimoto M., Hashidoko Y.	Repression of Tropolone Production and Induction of a Burkholderia plantarii Pseudo-Biofilm by Carot-4-en-9,10-diol, a Cell-to-Cell Signaling Disrupter Produced by Trichoderma virens.	PLoS ONE	8(11)	e78024	2013		
39064	24220652	Aubry S., Knerov? J., Hibberd J.M.	Endoreduplication is not involved in bundle-sheath formation in the C4 species Cleome gynandra.	J. Exp. Bot.	65(13)	3557-66	2014		
39065	24244664	Zheng X., Chen L., Li M., Lou Q., Xia H., Wang P., Li T., Liu H., Luo L.	Transgenerational variations in DNA methylation induced by drought stress in two rice varieties with distinguished difference to drought resistance.	PLoS ONE	8(11)	e80253	2013		
39066	24270514	Belimov A.A., Dodd I.C., Safronova V.I., Dumova V.A., Shaposhnikov A.I., Ladatko A.G., Davies W.J.	Abscisic acid metabolizing rhizobacteria decrease ABA concentrations in planta and alter plant growth.	Plant Physiol. Biochem.	74C	84-91	2014		
39067	24280269	Hanzawa E., Sasaki K., Nagai S., Obara M., Fukuta Y., Uga Y., Miyao A., Hirochika H., Higashitani A., Maekawa M., Sato T.	Isolation of a novel mutant gene for soil-surface rooting in rice (Oryza sativa L.).	Rice (N Y)	6	30	2013	SOR1	MHZ2, OsMHZ2, OsSOR1
39068	23994306	Zhang Y., Wong W.T., Yung K.F.	One-step production of biodiesel from rice bran oil catalyzed by chlorosulfonic acid modified zirconia via simultaneous esterification and transesterification.	Bioresour. Technol.	147	59-64	2013		
39069	24283297	Luo X., Ji S.D., Yuan P.R., Lee H.S., Kim D.M., Balkunde S., Kang J.W., Ahn S.N.	QTL mapping reveals a tight linkage between QTLs for grain weight and panicle spikelet number in rice.	Rice (N Y)	6	33	2013		
39070	24185848	Zhao X., Zou H., Fu J., Zhou J., Du G., Chen J.	Metabolic engineering of the regulators in nitrogen catabolite repression to reduce the production of ethyl carbamate in a model rice wine system.	Appl. Environ. Microbiol.	80(1)	392-8	2014		
39071	24279508	Wu S.F., Xu G., Qi Y.X., Xia R.Y., Huang J., Ye G.Y.	Two splicing variants of a novel family of octopamine receptors with different signaling properties.	J. Neurochem.	129(1)	37-47	2014		
39072	24244410	Sun X., Zhou W., Liu H., Zhang A., Ai C.R., Zhou S.S., Zhou C.X., Wang M.Q.	Transgenic Bt Rice Does Not Challenge Host Preference of the Target Pest of Rice Leaffolder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae).	PLoS ONE	8(11)	e79032	2013		
39073	24235132	Shaik R., Ramakrishna W.	Machine learning approaches distinguish multiple stress conditions using stress responsive genes and identify candidate genes for broad resistance in rice.	Plant Physiol.	164(1)	481-95	2014		
39074	23995923	Vu B.V., Pham K.T., Nakayashiki H.	Substrate-induced transcriptional activation of the MoCel7C cellulase gene is associated with methylation of histone H3 at lysine 4 in the rice blast fungus Magnaporthe oryzae.	Appl. Environ. Microbiol.	79(21)	6823-32	2013		
39075	24200076	Furukawa T., Inagaki H., Takai R., Hirai H., Che F.S.	Two distinct EF-Tu epitopes induce immune responses in rice and Arabidopsis.	Mol. Plant Microbe Interact.	27(2)	113-24	2014		
39076	24241166	Song X.M., Huang Z.N., Duan W.K., Ren J., Liu T.K., Li Y., Hou X.L.	Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis).	Mol. Genet. Genomics	289(1)	77-91	2014		
39077	24250219	Pandey B., Sharma P., Pandey D.M., Sharma I., Chatrath R.	Identification of new aquaporin genes and single nucleotide polymorphism in bread wheat.	Evol. Bioinform. Online	9	437-52	2013		
39078	24274685	Liu L., Veerappan V., Pu Q., Cheng C., Wang X., Lu L., Allen R.D., Guo G.	High-Resolution Hydrodynamic Chromatographic Separation of Large DNA Using Narrow, Bare Open Capillaries: A Rapid and Economical Alternative Technology to Pulsed-Field Gel Electrophoresis?	Anal. Chem.	86(1)	729-36	2014		
39079	24244592	Cheng X., Cheng J., Huang X., Lai Y., Wang L., Du W., Wang Z., Zhang H.	Dynamic Quantitative Trait Loci Analysis of Seed Reserve Utilization during Three Germination Stages in Rice.	PLoS ONE	8(11)	e80002	2013		
39080	24191997	Ou T., Zhu R.L., Chen Z.Y., Zhang Q.Y.	Isolation and identification of a lethal rhabdovirus from farmed rice field eels Monopterus albus.	Dis. Aquat. Org.	106(3)	197-206	2013		
39081	24192013	Kanchiswamy C.N., Mohanta T.K., Capuzzo A., Occhipinti A., Verrillo F., Maffei M.E., Malnoy M.	Differential expression of CPKs and cytosolic Ca2+ variation in resistant and susceptible apple cultivars (Malus x domestica) in response to the pathogen Erwinia amylovora and mechanical wounding.	BMC Genomics	14(1)	760	2013		
39082	24267591	Bai C., Rivera S.M., Medina V., Alves R., Vilaprinyo E., Sorribas A., Canela R., Capell T., Sandmann G., Christou P., Zhu C.	An in vitro system for the rapid functional characterization of genes involved in carotenoid biosynthesis and accumulation.	Plant J.	77(3)	464-75	2014		
39083	24239699	Hidalgo P.I., Ull?n RV., Albillos S.M., Montero O., Fern?ndez-Bodega MA., Garc?a-Estrada C., Fern?ndez-Aguado M., Mart?n JF.	Molecular characterization of the PR-toxin gene cluster in Penicillium roqueforti and Penicillium chrysogenum: Cross talk of secondary metabolite pathways.	Fungal Genet. Biol.	62	11-24	2014		
39084	24192297	Akiba T., Hibara K.I., Kimura F., Tsuda K., Shibata K., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Itoh J.I., Ito Y.	Organ fusion and defective shoot development in ONI3 mutants of rice.	Plant Cell Physiol.	55(1)	42-51	2014	IAA14,PIN10A,_,_,PIN5A,ROC1,IAA7	OsIAA14, AUX/IAA14, OsAUX/IAA14 ,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,,ONI3,OsPIN5a,Roc1(t), GL2-1,OsIAA7
39085	24247851	Karan R., Subudhi P.K.	Overexpression of an adenosine diphosphate-ribosylation factor gene from the halophytic grass Spartina alterniflora confers salinity and drought tolerance in transgenic Arabidopsis.	Plant Cell Rep.	33(2)	373-84	2014		
39086	24260239	Sun F., Yuan X., Xu Q., Zhou T., Fan Y., Zhou Y.	Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.	PLoS ONE	8(11)	e79514	2013		
39087	24197785	Mao B., Liu X., Hu D., Li D.	Co-expression of RCH10 and AGLU1 confers rice resistance to fungal sheath blight Rhizoctonia solani and blast Magnorpathe oryzae and reveals impact on seed germination.	World J. Microbiol. Biotechnol.	30(4)	1229-38	2014		
39088	24185032	Alexander M., Garbus H., Smith A.L., Rosenkrantz T.S., Fitch R.H.	Behavioral and histological outcomes following neonatal HI injury in a preterm (P3) and term (P7) rodent model.	Behav. Brain Res.	259C	85-96	2014		
39089	24243689	Singh R., Lee J.E., Dangol S., Choi J., Yoo R.H., Moon J.S., Shim J.K., Rakwal R., Agrawal G.K., Jwa N.S.	Protein interactome analysis of twelve mitogen-activated protein kinase kinase kinase in rice using a yeast two-hybrid system.	Proteomics	14(1)	105-15	2014		
39090	24280346	Ballini E., Nguyen T.T., Morel J.B.	Diversity and genetics of nitrogen-induced susceptibility to the blast fungus in rice and wheat.	Rice (N Y)	6	32	2013		
39091	24189714	Wang L., Cheng J., Lai Y., Du W., Huang X., Wang Z., Zhang H.	Identification of QTLs with additive, epistatic and QTL X development interaction effects for seed dormancy in rice.	Planta	239(2)	411-20	2014		
39092	24237606	Quilis J., L?pez-Garc?a B., Meynard D., Guiderdoni E., San Segundo B.	Inducible expression of a fusion gene encoding two proteinase inhibitors leads to insect and pathogen resistance in transgenic rice.	Plant Biotechnol. J.	12(3)	367-77	2014		
39093	24200074	Deng C.Y., Deng A.H., Sun S.T., Wang L., Wu J., Wu Y., Chen X.Y., Fang R., Wen T.Y., Qian W.	The Periplasmic PDZ Domain-Containing Protein Prc Modulates Full Virulence, Envelop Stress Responses and Directly Interacts with Dipeptidyl Peptidase of Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	27(2)	101-12	2014		
39094	24222495	Castro R.C., Roberto I.C.	Selection of a Thermotolerant Kluyveromyces marxianus Strain with Potential Application for Cellulosic Ethanol Production by Simultaneous Saccharification and Fermentation.	Appl. Biochem. Biotechnol.	172(3)	1553-64	2014		
39095	24280309	Bashir K., Takahashi R., Akhtar S., Ishimaru Y., Nakanishi H., Nishizawa N.K.	The knockdown of OsVIT2 and MIT affects iron localization in rice seed.	Rice (N Y)	6	31	2013		
39096	24239268	Singh A., Prasad S.M.	Effect of agro-industrial waste amendment on Cd uptake in Amaranthus caudatus grown under contaminated soil: An oxidative biomarker response.	Ecotoxicol. Environ. Saf.	100	105-13	2014		
39097	24206428	Ibraheem O., Botha C.E., Bradley G., Dealtry G., Roux S.	Rice sucrose transporter1 (OsSUT1) up-regulation in xylem parenchyma is caused by aphid feeding on rice leaf blade vascular bundles.	Plant Biol (Stuttg)	16(4)	783-91	2014		
39098	24238612	Wang Y., Chen W., Qin P., Huang Y., Ma B., Ouyang X., Chen X., Li S.	Characterization and Fine Mapping of GLABROUS RICE 2 in Rice.	J Genet Genomics	40(11)	579-82	2013		
39099	24151203	Hayashi-Tsugane M., Takahara H., Ahmed N., Himi E., Takagi K., Iida S., Tsugane K., Maekawa M.	A Mutable Albino Allele in Rice Reveals that Formation of Thylakoid Membranes Requires the SNOW-WHITE LEAF1 Gene.	Plant Cell Physiol.	55(1)	3-15	2014		
39100	24226906	Lu M.X., Cao S.S., Du Y.Z., Liu Z.X., Liu P., Li J.	Diapause, signal and molecular characteristics of overwintering Chilo suppressalis (Insecta: Lepidoptera: Pyralidae).	Sci Rep	3	3211	2013		
39101	24286630	Wang C.L., Qin T.F., Yu H.M., Zhang X.P., Che J.Y., Gao Y., Zheng C.K., Yang B., Zhao K.J.	The broad bacterial blight resistance of rice line CBB23 is triggered by a novel TAL effector of Xanthomonas oryzae pv. oryzae.	Mol. Plant Pathol.	15(4)	333-41	2014		
39102	24273057	Lei C., Han F., Sun Q., Li W.C., Lu A.H.	Confined Nanospace Pyrolysis for the Fabrication of Coaxial Fe3 O4 @C Hollow Particles with a Penetrated Mesochannel as a Superior Anode for Li-Ion Batteries.	Chemistry	20(1)	139-45	2014		
39103	24279397	Bauters L., Haegeman A., Kyndt T., Gheysen G.	Analysis of the transcriptome of Hirschmanniella oryzae to explore potential survival strategies and host-nematode interactions.	Mol. Plant Pathol.	15(4)	352-63	2014		
39104	24265778	Chauhan H., Khurana N., Agarwal P., Khurana J.P., Khurana P.	A Seed Preferential Heat Shock Transcription Factor from Wheat Provides Abiotic Stress Tolerance and Yield Enhancement in Transgenic Arabidopsis under Heat Stress Environment.	PLoS ONE	8(11)	e79577	2013		
39105	24279904	Scholey A.B., Camfield D.A., Hughes M.E., Woods W., Stough C.K., White D.J., Gondalia S.V., Frederiksen P.D.	A randomized controlled trial investigating the neurocognitive effects of Lacprodan(R) PL-20, a phospholipid-rich milk protein concentrate, in elderly participants with age-associated memory impairment: the Phospholipid Intervention for Cognitive Ageing Reversal (PLICAR): study protocol for a randomized controlled trial.	Trials	14(1)	404	2013		
39106	24262840	Nakhshiniev B., Biddinika M.K., Gonzales H.B., Sumida H., Yoshikawa K.	Evaluation of hydrothermal treatment in enhancing rice straw compost stability and maturity.	Bioresour. Technol.	151C	306-313	2013		
39107	24121292	Chen H., Xie W., He H., Yu H., Chen W., Li J., Yu R., Yao Y., Zhang W., He Y., Tang X., Zhou F., Deng X.W., Zhang Q.	A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding.	Mol Plant	7(3)	541-53	2014		
39108	24211267	Zhang H., Liu Y., Zhou J., Wang J., Sun B.	Amylopectin is the anti-fatigue ingredient in glutinous rice.	Int. J. Biol. Macromol.	63	240-3	2014		
39109	24287529	Huang W., Huang J., Wang X., Wang F., Shi J.	Comparability of Red/Near-Infrared Reflectance and NDVI Based on the Spectral Response Function between MODIS and 30 Other Satellite Sensors Using Rice Canopy Spectra.	Sensors (Basel)	13(12)	16023-50	2013		
39110	24285580	Hamel D., Sanchez M., Duhamel F., Roy O., Honor? JC., Noueihed B., Zhou T., Nadeau-Vall?e M., Hou X., Lavoie J.C., Mitchell G., Mamer O., Chemtob S.	G-protein-coupled receptor 91 and Succinate Are Key Contributors in Neonatal Postcerebral Hypoxia-Ischemia Recovery.	Arterioscler. Thromb. Vasc. Biol.	34(2)	285-93	2014		
39111	24275941	Asif M.H., Lakhwani D., Pathak S., Bhambhani S., Bag S.K., Trivedi P.K.	Genome-wide identification and expression analysis of the mitogen-activated protein kinase gene family from banana suggest involvement of specific members in different stages of fruit ripening.	Funct. Integr. Genomics	14(1)	161-75	2014		
39112	24220337	Kong X., Pan J., Zhang D., Jiang S., Cai G., Wang L., Li D.	Identification of mitogen-activated protein kinase kinase gene family and MKK-MAPK interaction network in maize.	Biochem. Biophys. Res. Commun.	441(4)	964-9	2013		
39113	24259682	Ishida S., Uebayashi N., Tazoe Y., Ikeuchi M., Homma K., Sato F., Endo T.	Diurnal and Developmental Changes in Energy Allocation of Absorbed Light at PSII in Field-grown Rice.	Plant Cell Physiol.	55(1)	171-82	2014		
39114	24270018	Ito T., Olesen N.J.	Susceptibility of various Japanese freshwater fish species to an isolate of viral haemorrhagic septicaemia virus (VHSV) genotype IVb.	Dis. Aquat. Org.	107(1)	1-8	2013		
39115	24240781	Romero L.E., Lozano I., Garavito A., Carabali S.J., Triana M., Villareal N., Reyes L., Duque M.C., Martinez C.P., Calvert L., Lorieux M.	Major QTLs Control Resistance to Rice Hoja Blanca Virusand Its Vector Tagosodes orizicolus.	G3 (Bethesda)	4(1)	133-42	2014		
39116	23907589	Ho J.N., Son M.E., Lim W.C., Lim S.T., Cho H.Y.	Germinated brown rice extract inhibits adipogenesis through the down-regulation of adipogenic genes in 3T3-L1 adipocytes.	Plant Foods Hum Nutr	68(3)	274-8	2013		
39117	24064300	Matsumoto H., Koganei K., Nishida N., Koyama Y., Saito S., Kataoka H., Ogihara J., Kasumi T.	Cell dispersion culture for the effective growth of Humicola insolens and efficient enzyme production.	J. Biosci. Bioeng.	117(3)	257-62	2014		
39118	24058573	Wang Z.H., Zhang D., Bai Y., Zhang Y.H., Liu Y., Wu Y., Lin X.Y., Wen J.W., Xu C.M., Li L.F., Liu B.	Genomewide Variation in an Introgression Line of Rice-Zizania Revealed by Whole-Genome re-Sequencing.	PLoS ONE	8(9)	e74479	2013		
39119	24058171	Park J., Lee Y.H.	Bidirectional-genetics platform, a dual-purpose mutagenesis strategy for filamentous fungi.	Eukaryotic Cell	12(11)	1547-53	2013		
39120	24058362	Zhou G., Xu D., Xu D., Zhang M.	Southern rice black-streaked dwarf virus: a white-backed planthopper-transmitted fijivirus threatening rice production in Asia.	Front Microbiol	4	270	2013		
39121	24018854	Yang J.C., Li M., Xie X.Z., Han G.L., Sui N., Wang B.S.	Deficiency of Phytochrome B alleviates chilling-induced photoinhibition in rice.	Am. J. Bot.	100(9)	1860-70	2013		
39122	23999092	Jiang W., Zhou H., Bi H., Fromm M., Yang B., Weeks D.P.	Demonstration of CRISPR/Cas9/sgRNA-mediated targeted gene modification in Arabidopsis, tobacco, sorghum and rice.	Nucleic Acids Res.	41(20)	e188	2013		
39123	24057602	Li Y., Wang Y., Romeis J., Liu Q., Lin K., Chen X., Peng Y.	Bt rice expressing Cry2Aa does not cause direct detrimental effects on larvae of Chrysoperla sinica.	Ecotoxicology	22(9)	1413-21	2013		
39124	24130448	Yang Z., Peng Z., Wei S., Yu Y.	Cloning and characterization of endo-beta-1,4-glucanase genes in the common wheat line three pistils.	Genet. Mol. Biol.	36(3)	400-7	2013		
39125	24085445	Wei X.J., Tang S.Q., Shao G.N., Chen M.L., Hu Y.C., Hu P.S.	Fine mapping and characterization of a novel dwarf and narrow-leaf mutant dnl1 in rice.	Genet. Mol. Res.	12(3)	3845-55	2013		
39126	24056187	Meng M., Li B., Shao J.J., Wang T., He B., Shi J.B., Ye Z.H., Jiang G.B.	Accumulation of total mercury and methylmercury in rice plants collected from different mining areas in China.	Environ. Pollut.	184	179-86	2014		
39127	24115565	Pittelkow C.M., Adviento-Borbe MA., van Kessel C., Hill J.E., Lin Quist BA.	Optimizing rice yields while minimizing yield-scaled global warming potential.	Glob Chang Biol	20(5)	1382-93	2014		
39128	24078602	Shen Y., Lansky E., Traber M., Nevo E.	Increases in both acute and chronic temperature potentiate tocotrienol concentrations in wild barley at 'Evolution Canyon'.	Chem. Biodivers.	10(9)	1696-705	2013		
39129	24053951	Wang W., Chu H., Zhang D., Liang W.	Fine mapping and analysis of DWARF TILLER1 in controlling rice architecture.	J Genet Genomics	40(9)	493-5	2013		
39130	24041758	Siddiqui S., Ahsan H., Khan M.R., Siddiqui W.A.	Protective effects of tocotrienols against lipid-induced nephropathy in experimental type-2 diabetic rats by modulation in TGF-beta expression.	Toxicol. Appl. Pharmacol.	273(2)	314-24	2013		
39131	24039439	Konya H., Katsuno T., Tsunoda T., Yano Y., Kamitani M., Miuchi M., Hamaguchi T., Miyagawa J.I., Namba M.	Effects of combination therapy with mitiglinide and voglibose on postprandial plasma glucose in patients with type 2 diabetes mellitus.	Diabetes Metab Syndr Obes	6	317-325	2013		
39132	24036507	Liu S., Liang Q.M., Huang Y.J., Yuan X., Zhou W.W., Qiao F., Cheng J., Gurr G.M., Zhu Z.R.	Cloning, functional characterization, and expression profiles of NADPH-cytochrome P450 reductase gene from the Asiatic rice striped stem borer, Chilo suppressalis (Lepidoptera: Pyralidae).	Comp. Biochem. Physiol. B, Biochem. Mol. Biol.	166(3-4)	225-31			
39133	24086146	Liu S., Wang X., Wang H., Xin H., Yang X., Yan J., Li J., Tran L.S., Shinozaki K., Yamaguchi-Shinozaki K., Qin F.	Genome-wide analysis of ZmDREB genes and their association with natural variation in drought tolerance at seedling stage of Zea mays L.	PLoS Genet.	9(9)	e1003790	2013		
39134	24066067	Song Z., Parr J.F., Guo F.	Potential of global cropland phytolith carbon sink from optimization of cropping system and fertilization.	PLoS ONE	8(9)	e73747	2013		
39135	24002549	Ma J., Jiang Q.T., Zhang X.W., Lan X.J., Pu Z.E., Wei Y.M., Liu C., Lu Z.X., Zheng Y.L.	Structure and expression of barley starch phosphorylase genes.	Planta	238(6)	1081-1093	2013		
39136	24015925	Ghosh J.S., Chaudhuri S., Dey N., Pal A.	Functional characterization of a serine-threonine protein kinase from Bambusa balcooa that implicates in cellulose overproduction and superior quality fiber formation.	BMC Plant Biol.	13	128	2013		
39137	24273431	Zhou L., Chen Z., Lang X., Du B., Liu K., Yang G., Hu G., Li S., He G., You A.	Development and validation of a PCR-based functional marker system for the brown planthopper resistance gene Bph14 in rice.	Breed. Sci.	63(3)	347-352	2013		
39138	23995777	Pandey A., Ray S.K., Sonti R.V., Rajeshwari R.	gltB/D Mutants of Xanthomonas oryzae pv. oryzae are Virulence Deficient.	Curr. Microbiol.	68(1)	105-12	2014		
39139	24077726	Wang J., Dong H., Wang W., Gu J.D.	Reverse-transcriptional gene expression of anammox and ammonia-oxidizing archaea and bacteria in soybean and rice paddy soils of Northeast China.	Appl. Microbiol. Biotechnol.	98(6)	2675-86	2014		
39140	24128405	Xu M., Yin P., Liu X., Tang Q., Qu R., Xu Q.	Utilization of rice husks modified by organomultiphosphonic acids as low-cost biosorbents for enhanced adsorption of heavy metal ions.	Bioresour. Technol.	149	420-4	2013		
39141	24028141	Liang X., Qin L., Liu P., Wang M., Ye H.	Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa.	Plant Cell Environ.	37(3)	780-94	2014		
39142	24102799	Liu Z.B., Wang J.M., Yang F.X., Yang L., Yue Y.F., Xiang J.B., Gao M., Xiong F.J., Lv D., Wu X.J., Liu N., Zhang X., Li X.F., Yang Y.	A novel membrane-bound E3 ubiquitin ligase enhances the thermal resistance in plants.	Plant Biotechnol. J.	12(1)	93-104	2014		
39143	23996237	Zhao X., Zou H., Fu J., Chen J., Zhou J., Du G.	Nitrogen regulation involved in the accumulation of urea in Saccharomyces cerevisiae.	Yeast	30(11)	437-47	2013		
39144	24034357	Yu H., Xie W., Li J., Zhou F., Zhang Q.	A whole-genome SNP array (RICE6K) for genomic breeding in rice.	Plant Biotechnol. J.	12(1)	28-37	2014		
39145	24042571	Acevedo-Garcia J., Collins N.C., Ahmadinejad N., Ma L., Houben A., Bednarek P., Benjdia M., Freialdenhoven A., Altm?ller J., N?rnberg P., Reinhardt R., Schulze-Lefert P., Panstruga R.	Fine mapping and chromosome walking towards the Ror1 locus in barley (Hordeum vulgare L.).	Theor. Appl. Genet.	126(12)	2969-82	2013		
39146	24018688	Yamamoto S., Tomiyama M., Nemoto R., Naganuma T., Ogawa T., Muramoto K.	Effects of food lectins on the transport system of human intestinal Caco-2 cell monolayers.	Biosci. Biotechnol. Biochem.	77(9)	1917-24	2013		
39147	24056072	Yuan Y., Krogh P.H., Bai X., Roelofs D., Chen F., Zhu-Salzman K., Liang Y., Sun Y., Ge F.	Microarray detection and qPCR screening of potential biomarkers of Folsomia candida (Collembola: Isotomidae) exposed to Bt proteins (Cry1Ab and Cry1Ac).	Environ. Pollut.	184	170-8	2014		
39148	24012537	Macgregor B.J., Biddle J.F., Harbort C., Matthysse A.G., Teske A.	Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament.	Mar Genomics	11	53-65	2013		
39149	24009336	Nomura T., Magome H., Hanada A., Takeda-Kamiya N., Mander L.N., Kamiya Y., Yamaguchi S.	Functional Analysis of Arabidopsis CYP714A1 and CYP714A2 Reveals That They are Distinct Gibberellin Modification Enzymes.	Plant Cell Physiol.	54(11)	1837-51	2013		
39150	24113511	Gopalakrishnan S., Vadlamudi S., Bandikinda P., Sathya A., Vijayabharathi R., Rupela O., Kudapa H., Katta K., Varshney R.K.	Evaluation of Streptomyces strains isolated from herbal vermicompost for their plant growth-promotion traits in rice.	Microbiol. Res.	169(1)	40-8	2014		
39151	24102738	Roy Choudhury S., Riesselman A.J., Pandey S.	Constitutive or seed-specific overexpression of Arabidopsis G-protein gamma subunit 3 (AGG3) results in increased seed and oil production and improved stress tolerance in Camelina sativa.	Plant Biotechnol. J.	12(1)	49-59	2014		
39152	24025514	Cho K., Shibato J., Kubo A., Kohno Y., Satoh K., Kikuchi S., Sarkar A., Agrawal G.K., Rakwal R.	Comparative analysis of seed transcriptomes of ambient ozone-fumigated 2 different rice cultivars.	Plant Signal Behav	8(11)	e26300	2013		
39153	24074460	Trobacher C.P., Zarei A., Liu J., Clark S.M., Bozzo G.G., Shelp B.J.	Calmodulin-dependent and calmodulin-independent glutamate decarboxylases in apple fruit.	BMC Plant Biol.	13	144	2013		
39154	24058671	Zhou Y., Gong Z., Yang Z., Yuan Y., Zhu J., Wang M., Yuan F., Wu S., Wang Z., Yi C., Xu T., Ryom M., Gu M., Liang G.	Mutation of the light-induced yellow leaf 1 gene, which encodes a geranylgeranyl reductase, affects chlorophyll biosynthesis and light sensitivity in rice.	PLoS ONE	8(9)	e75299	2013	LYL1,LYL2	OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,OsGGRII, GGRII, OsGGR2, GGR2
39155	24043333	Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.	A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.	Plant Cell Rep.	32(12)	1855-67	2013	ELL,YGL10,CAB2R,FGL,PSAA,YGL1,PSBA,YGL98,CAB1R,SE5,_	chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,PsaA, psaA, PsAA1,OsYGL1, CHLG, Ygl1, CS, OsCHLG,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,OsChlH, ChlH, CHLH, OsCHLH
39156	24273430	Kobayashi A., Sonoda J., Sugimoto K., Kondo M., Iwasawa N., Hayashi T., Tomita K., Yano M., Shimizu T.	Detection and verification of QTLs associated with heat-induced quality decline of rice (Oryza sativa L.) using recombinant inbred lines and near-isogenic lines.	Breed. Sci.	63(3)	339-346	2013		
39157	24033370	Park S., Byeon Y., Back K.	Functional analyses of three ASMT gene family members in rice plants.	J. Pineal Res.	55(4)	409-15	2013		
39158	24021715	Shao E., Liu S., Lin L., Guan X.	Proteolytic processing of Bacillus thuringiensis toxin Cry1Ab in rice brown planthopper, Nilaparvata lugens (St?l).	J. Invertebr. Pathol.	114(3)	255-7	2013		
39159	24079304	Tao Y., Liu Q., Wang H., Zhang Y., Huang X., Wang B., Lai J., Ye J., Liu B., Xu M.	Identification and fine-mapping of a QTL, qMrdd1, that confers recessive resistance to maize rough dwarf disease.	BMC Plant Biol.	13	145	2013		
39160	24077888	Yi C., Zhang W., Dai X., Li X., Gong Z., Zhou Y., Liang G., Gu M.	Identification and diversity of functional centromere satellites in the wild rice species Oryza brachyantha.	Chromosome Res.	21(8)	725-37	2013	_,CENH3	CRR-F,CENH3, CenH3
39161	24012281	Murakami K., Sasaki S., Uenishi K.	serum adiponectin concentration in relation to macronutrient and food intake in young Japanese women.	Nutrition	29(11-12)	1315-20			
39162	24090832	Yuvaraj S., Kalai Selvan R., Bhooshan Kumar V., Perelshtein I., Gedanken A., Isakkimuthu S., Arumugam S.	Sonochemical synthesis, structural, magnetic and grain size dependent electrical properties of NdVO4 nanoparticles.	Ultrason Sonochem	21(2)	599-605	2014		
39163	24102775	Company N., Nadal A., La Paz JL., Mart?nez S., Rasche S., Schillberg S., Montesinos E., Pla M.	The production of recombinant cationic alpha-helical antimicrobial peptides in plant cells induces the formation of protein bodies derived from the endoplasmic reticulum.	Plant Biotechnol. J.	12(1)	81-92	2014		
39164	24086432	Nars A., Lafitte C., Chabaud M., Drouillard S., M?lida H., Danoun S., Le Costaou?c T., Rey T., Benedetti J., Bulone V., Barker D.G., Bono J.J., Dumas B., Jacquet C., Heux L., Fliegmann J., Bottin A.	Aphanomyces euteiches Cell Wall Fractions Containing Novel Glucan-Chitosaccharides Induce Defense Genes and Nuclear Calcium Oscillations in the Plant Host Medicago truncatula.	PLoS ONE	8(9)	e75039	2013		
39165	24273421	Wang H., Xu X., Zhan X., Zhai R., Wu W., Shen X., Dai G., Cao L., Cheng S.	Identification of qRL7, a major quantitative trait locus associated with rice root length in hydroponic conditions.	Breed. Sci.	63(3)	267-274	2013		
39166	24013236	Yang J., Zhang H.M., Ying L., Li J., Lv M.F., Xie L., Li P.P., Liu X.Y., Liang-Ying D., Chen J.P.	Rice black-streaked dwarf virus genome segment S5 is a bicistronic mRNA in infected plants.	Arch. Virol.	159(2)	307-14	2014		
39167	23938389	Jiang Y., Sun L., Jiang M., Li K., Song Y., Zhu C.	Production of marker-free and RSV-resistant transgenic rice using a twin T-DNA system and RNAi.	J. Biosci.	38(3)	573-81	2013		
39168	24118770	Sun L., Yang D.L., Kong Y., Chen Y., Li X.Z., Zeng L.J., Li Q., Wang E.T., He Z.H.	Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice.	Mol. Plant Pathol.	15(2)	161-73	2014		
39169	24030721	Yin Z., Wang J., Wang D., Fan W., Wang S., Ye W.	The MAPKKK gene family in Gossypium raimondii: genome-wide identification, classification and expression analysis.	Int J Mol Sci	14(9)	18740-57	2013		
39170	24056455	Akasaka N., Sakoda H., Hidese R., Ishii Y., Fujiwara S.	An Efficient Method Using Gluconacetobacter europaeus To Reduce an Unfavorable Flavor Compound, Acetoin, in Rice Vinegar Production.	Appl. Environ. Microbiol.	79(23)	7334-42	2013		
39171	24273423	Abe T., Nonoue Y., Ono N., Omoteno M., Kuramata M., Fukuoka S., Yamamoto T., Yano M., Ishikawa S.	Detection of QTLs to reduce cadmium content in rice grains using LAC23/Koshihikari chromosome segment substitution lines.	Breed. Sci.	63(3)	284-291	2013		
39172	24098073	Muhammad S.I., Maznah I., Mahmud R., Zuki A.B., Imam M.U.	Upregulation of genes related to bone formation by gamma-amino butyric acid and gamma-oryzanol in germinated brown rice is via the activation of GABAB-receptors and reduction of serum IL-6 in rats.	Clin Interv Aging	8	1259-71	2013		
39173	24273425	Taguchi-Shiobara F., Ozaki H., Sato H., Maeda H., Kojima Y., Ebitani T., Yano M.	Mapping and validation of QTLs for rice sheath blight resistance.	Breed. Sci.	63(3)	301-308	2013		
39174	24077074	Sasidharan R., Mustroph A., Boonman A., Akman M., Ammerlaan A.M., Breit T., Schranz M.E., Voesenek L.A., van Tienderen PH.	Root transcript profiling of two rorippa species reveals gene clusters associated with extreme submergence tolerance.	Plant Physiol.	163(3)	1277-92	2013		
39175	24089866	Feng H., Jiang N., Huang C., Fang W., Yang W., Chen G., Xiong L., Liu Q.	A hyperspectral imaging system for an accurate prediction of the above-ground biomass of individual rice plants.	Rev Sci Instrum	84(9)	095107	2013		
39176	24061417	Kato Y., Nomura T., Ogita S., Takano M., Hoshino K.	Two new beta-glucosidases from ethanol-fermenting fungus Mucor circinelloides NBRC 4572: enzyme purification, functional characterization, and molecular cloning of the gene.	Appl. Microbiol. Biotechnol.	97(23)	10045-56	2013		
39177	24043853	Yokotani N., Sato Y., Tanabe S., Chujo T., Shimizu T., Okada K., Yamane H., Shimono M., Sugano S., Takatsuji H., Kaku H., Minami E., Nishizawa Y.	WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance.	J. Exp. Bot.	64(16)	5085-97	2013		
39178	24043854	Chu H., Liang W., Li J., Hong F., Wu Y., Wang L., Wang J., Wu P., Liu C., Zhang Q., Xu J., Zhang D.	A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.	J. Exp. Bot.	64(17)	5359-69	2013		
39179	24005473	Sahoo R.K., Ansari M.W., Dangar T.K., Mohanty S., Tuteja N.	Phenotypic and molecular characterisation of efficient nitrogen-fixing Azotobacter strains from rice fields for crop improvement.	Protoplasma	251(3)	511-23	2014		
39180	24061553	Fukumoto K., Tsuno T., Taniguchi M., Terada S.	Rice bran extract affects differentiation of mesenchymal stem cells potency into osteogenic cells.	Cytotechnology	65(6)	937-43	2013		
39181	24078111	Fang C., Xu T., Ye C., Huang L., Wang Q., Lin W.	Method for RNA extraction and cDNA library construction from microbes in crop rhizosphere soil.	World J. Microbiol. Biotechnol.	30(2)	783-9	2014		
39182	23849113	Park C.J., Sharma R., Lefebvre B., Canlas P.E., Ronald P.C.	The endoplasmic reticulum-quality control component SDF2 is essential for XA21-mediated immunity in rice.	Plant Sci.	210	53-60	2013		
39183	24013899	Zhang L., Li Z., Dai B., Zhang W., Yuan Y.	Effect of submerged and solid-state fermentation on pigment and citrinin production by Monascus purpureus.	Acta. Biol. Hung.	64(3)	385-94	2013		
39184	24024469	Handakumbura P.P., Matos D.A., Osmont K.S., Harrington M.J., Heo K., Kafle K., Kim S.H., Baskin T.I., Hazen S.P.	Perturbation of Brachypodium distachyon CELLULOSE SYNTHASE A4 or 7 results in abnormal cell walls.	BMC Plant Biol.	13	131	2013		
39185	24086651	Sinha D., Gupta M.K., Patel H.K., Ranjan A., Sonti R.V.	Cell Wall Degrading Enzyme Induced Rice Innate Immune Responses Are Suppressed by the Type 3 Secretion System Effectors xopN, xopQ, xopX and XopZ of Xanthomonas oryzae pv. oryzae.	PLoS ONE	8(9)	e75867	2013		
39186	24039714	Boddy L.G., Bradford K.J., Fischer A.J.	Stratification requirements for seed dormancy alleviation in a wetland weed.	PLoS ONE	8(9)	e71457	2013		
39187	24102419	Lu Y., Li Y., Yang Q., Zhang Z., Chen Y., Zhang S., Peng X.X.	Suppression of glycolate oxidase causes glyoxylate accumulation that inhibits photosynthesis through deactivating Rubisco in rice.	Physiol Plant	150(3)	463-76	2014	GLO5,PSAB,_,_,GLO1	GLO4, OsGLO4, OsGLO5,PsaB, psaB, PsAA2,,psaN,GLO1, OsGLO1
39188	24043125	Kim D.H., Kim S.H., Kwon S.W., Lee J.K., Hong S.B.	Fungal Diversity of Rice Straw for Meju Fermentation.	J. Microbiol. Biotechnol.	23(12)	1654-63	2013		
39189	24073880	Lee W.S., Rudd J.J., Hammond-Kosack KE., Kanyuka K.K.	Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat.	Mol. Plant Microbe Interact.	27(3)	236-43	2014		
39190	24124491	Morozumi Y., Ino R., Ikawa S., Mimida N., Shimizu T., Toki S., Ichikawa H., Shibata T., Kurumizaka H.	Homologous Pairing Activities of Two Rice RAD51 Proteins, RAD51A1 and RAD51A2.	PLoS ONE	8(10)	e75451	2013	RAD51A2,RAD51A1	OsRad51A2, OsRAD51,OsRAD51A1
39191	24083809	Kuwatsuka Y., Shimizu K., Akiyama Y., Koike Y., Ogawa F., Furue M., Utani A.	Yusho patients show increased serum IL-17, IL-23, IL-1beta, and TNFalpha levels more than 40 years after accidental polychlorinated biphenyl poisoning.	J Immunotoxicol	11(3)	246-9	2014		
39192	24134674	Byeon Y., Lee H.Y., Lee K., Park S., Back K.	Cellular localization and kinetics of the rice melatonin biosynthetic enzymes SNAT and ASMT.	J. Pineal Res.	56(1)	107-14	2014		
39193	24270630	Chang C.W., Cou?ago RM., Williams S.J., Boden M., Kobe B.	The distribution of different classes of nuclear localization signals (NLSs) in diverse organisms and the utilization of the minor NLS-binding site inplantnuclear import factor importin-alpha.	Plant Signal Behav	8(10)	e25976	2013		
39194	24173698	H?ller S., Hajirezaei M.R., von Wir?n N., Frei M.	Ascorbate metabolism in rice genotypes differing in zinc efficiency.	Planta	239(2)	367-79	2014		
39195	24032669	Nazari F., Sulyok M., Yazdanpanah H., Kobarfard F., Krska R.	A survey of mycotoxins in domestic rice in Iran by liquid chromatography tandem mass spectrometry.	Toxicol. Mech. Methods	24(1)	37-41	2014		
39196	24093800	Li Y.F., Wang Y., Tang Y., Kakani V.G., Mahalingam R.	Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.).	BMC Plant Biol.	13	153	2013		
39197	24173642	Kim J.K., Natarajan S., Park H., Huynh K.H., Lee S.H., Kim J.G., Ahn Y.J., Kang L.W.	Crystal structure of XoLAP, a leucine aminopeptidase, from Xanthomonas oryzae pv. oryzae.	J. Microbiol.	51(5)	627-32	2013		
39198	24141117	Byeon J.H., Cho J.H.	An efficient method for organic acetylation and use of DL-phosphinothricin as a negative selection agent in argE transgenic rice.	Biochem. Biophys. Res. Commun.	441(1)	243-8	2013		
39199	24140150	Chung H., Choi J., Park S.Y., Jeon J., Lee Y.H.	Two conidiation-related Zn(II)2Cys6 transcription factor genes in the rice blast fungus.	Fungal Genet. Biol.	61	133-41	2013		
39200	24280045	Kumar K., Sinha A.K.	Overexpression of constitutively active mitogen activated protein kinase kinase 6 enhances tolerance to salt stress in rice.	Rice (N Y)	6	25	2013		
39201	24102635	Lei Q., Wang L., Tan D.X., Zhao Y., Zheng X.D., Chen H., Li Q.T., Zuo B.X., Kong J.	Identification of genes for melatonin synthetic enzymes in 'Red Fuji' apple (Malus domestica Borkh.cv.Red) and their expression and melatonin production during fruit development.	J. Pineal Res.	55(4)	443-51	2013		
39202	24098112	Badaruddin M., Holcombe L.J., Wilson R.A., Wang Z.Y., Kershaw M.J., Talbot N.J.	Glycogen metabolic genes are involved in trehalose-6-phosphate synthase-mediated regulation of pathogenicity by the rice blast fungus Magnaporthe oryzae.	PLoS Pathog.	9(10)	e1003604	2013		
39203	24090005	Bian Q.Q., Li X.Y., Fang Y.Q., Jia Y.Q., Mu X.D.	Molecular identification of Pomacea canaliculata and P. insularum from rice paddy in different origins in China using mitochondrial adenosine triphosphate subunit 6 gene.	Mitochondrial DNA			2013		
39204	24098411	Ogiso-Tanaka E., Matsubara K., Yamamoto S., Nonoue Y., Wu J., Fujisawa H., Ishikubo H., Tanaka T., Ando T., Matsumoto T., Yano M.	Natural Variation of the RICE FLOWERING LOCUS T 1 Contributes to flowering time Divergence in Rice.	PLoS ONE	8(10)	e75959	2013	HD3A,FTL10,RFT1,FTL12,FTL13,FTL8,FTL7,FTL4,SE1,HD6,FTL1,HD5,FTL5,FTL9,FTL11,FTL6	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsFTL10,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsFTL12, FT-L11,OsFTL13,FT-L 8, OsFTL8,FT-L 7, OsFTL7,OsFT, osFT, FT-L 4, OsFTL4, FT-L4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,FTL, FT-L1, OsFTL1, FTL1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,FT-L 5, OsFTL5, FT-L5,FT-L 9, OsFTL9,OsFTL11,FT-L 6, OsFTL6, FT-L6
39205	24164672	Nishizawa-Yokoi A., Endo M., Osakabe K., Saika H., Toki S.	Precise marker excision system using an animal-derived piggyBac transposon in plants.	Plant J.	77(3)	454-63	2014		
39206	24094741	Zhao Z., Zhang Y., Liu X., Zhang X., Liu S., Yu X., Ren Y., Zheng X., Zhou K., Jiang L., Guo X., Gai Y., Wu C., Zhai H., Wang H., Wan J.	A role for a dioxygenase in auxin metabolism and reproductive development in rice.	Dev. Cell	27(1)	113-22	2013		
39207	24132150	Zhu Y., Zhu G., Guo Q., Zhu Z., Wang C., Liu Z.	A Comparative Proteomic Analysis of Pinellia ternata Leaves Exposed to Heat Stress.	Int J Mol Sci	14(10)	20614-34	2013		
39208	24102500	Sebbar N., Bozzelli J.W., Bockhorn H.	Thermochemistry and Kinetics for 2-butanone-1yl Radical (CH2?C(=O)CH2CH3) Reactions with O2.	J Phys Chem A	118(1)	21-37	2014		
39209	24151204	Hu Z., Yamauchi T., Yang J., Jikumaru Y., Tsuchida-Mayama T., Ichikawa H., Takamure I., Nagamura Y., Tsutsumi N., Yamaguchi S., Kyozuka J., Nakazono M.	Strigolactone and cytokinin act antagonistically in regulating rice mesocotyl elongation in darkness.	Plant Cell Physiol.	55(1)	30-41	2014		
39210	24155879	Yuan X., Zhang S., Sun M., Liu S., Qi B., Li X.	Putative DHHC-Cysteine-Rich Domain S-Acyltransferase in Plants.	PLoS ONE	8(10)	e75985	2013		
39211	24089433	Hirano K., Aya K., Morinaka Y., Nagamatsu S., Sato Y., Antonio B.A., Namiki N., Nagamura Y., Matsuoka M.	Survey of genes involved in rice secondary cell wall formation through a co-expression network.	Plant Cell Physiol.	54(11)	1803-21	2013		
39212	24168061	Sandhu N., Jain S., Kumar A., Mehla B.S., Jain R.	Genetic variation, linkage mapping of QTL and correlation studies for yield, root, and agronomic traits for aerobic adaptation.	BMC Genet.	14(1)	104	2013		
39213	24088323	Yin G., Xu H., Xiao S., Qin Y., Li Y., Yan Y., Hu Y.	The large soybean (Glycine max) WRKY TF family expanded by segmental duplication events and subsequent divergent selection among subgroups.	BMC Plant Biol.	13	148	2013		
39214	24104396	Garg R., Verma M., Agrawal S., Shankar R., Majee M., Jain M.	Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata, Provides Novel Insights into the Salinity and submergence tolerance Factors.	DNA Res.	21(1)	69-84	2014		
39215	24059703	Raghunath P., Lin M.C.	Ab Initio Chemical Kinetics for SiH2 + Si2H6 and SiH3 + Si2H5 Reactions and the Related Unimolecular Decomposition of Si3H8 under a-Si/H CVD Conditions.	J Phys Chem A	117(42)	10811-23	2013		
39216	24130197	Xiao J., Cheng H., Li X., Xiao J., Xu C., Wang S.	Rice WRKY13 Regulates Crosstalk between Abiotic and Biotic Stress Signaling Pathways by Selective Binding to Different cis-Elements.	Plant Physiol.	163(4)	1868-82	2013		
39217	24280004	Zhao X.Q., Wang W.S., Zhang F., Zhang T., Zhao W., Fu B.Y., Li Z.K.	Temporal profiling of primary metabolites under chilling stress and its association with seedling chilling tolerance of rice (Oryza sativa L.).	Rice (N Y)	6	23	2013		
39218	24142111	Kumar K., Mosa K.A., Chhikara S., Musante C., White J.C., Dhankher O.P.	Two rice plasma membrane intrinsic proteins, OsPIP2;4 and OsPIP2;7, are involved in transport and providing tolerance to boron toxicity.	Planta	239(1)	187-98	2014		
39219	24117535	Madan N., Rajkumar T., Sundar Raj N., Farook M.A., Nambi K.S., Abdul Majeed S., Sahul Hameed AS.	Tissue distribution of hepatopancreatic parvo-like virus of shrimp in freshwater rice-field crab, Paratelphusa hydrodomous (Herbst).	J. Fish Dis.	37(11)	969-80	2014		
39220	24096657	Anzawa Y., Nabekura Y., Satoh K., Satoh Y., Ohno S., Watanabe T., Kaneoke M., Kume K., Mizunuma M., Watanabe K., Katsumata K., Hirata D.	Polishing properties of sake rice koshitanrei for high-quality sake brewing.	Biosci. Biotechnol. Biochem.	77(10)	2160-5	2013		
39221	24089437	Dong Z., Jiang C., Chen X., Zhang T., Ding L., Song W., Luo H., Lai J., Chen H., Liu R., Zhang X., Jin W.	Maize LAZY1 Mediates Shoot Gravitropism and Inflorescence Development through Regulating Auxin Transport, Auxin Signaling, and Light Response.	Plant Physiol.	163(3)	1306-22	2013		
39222	24116181	Yan X., Que Y., Wang H., Wang C., Li Y., Yue X., Ma Z., Talbot N.J., Wang Z.	The MET13 Methylenetetrahydrofolate Reductase Gene Is Essential for Infection-Related Morphogenesis in the Rice Blast Fungus Magnaporthe oryzae.	PLoS ONE	8(10)	e76914	2013		
39223	24147765	Narsai R., Devenish J., Castleden I., Narsai K., Xu L., Shou H., Whelan J.	Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, AND evolutionary information for rice AND Arabidopsis.	Plant J.	76(6)	1057-73	2013		
39224	24113387	Guo J., Li H., Chang J.W., Lei Y., Li S., Chen L.L.	Prediction and characterization of protein-protein interaction network in Xanthomonas oryzae pv. oryzae PXO99(A.)	Res. Microbiol.	164(10)	1035-44	2013		
39225	24099956	Hidayat C., Hastuti P., Wardhani A.K., Nadia L.S.	Method of phorbol ester degradation in Jatropha curcas L. seed cake using rice bran lipase.	J. Biosci. Bioeng.	117(3)	372-4	2014		
39226	24201910	Han P., Gu J.D.	A newly designed degenerate PCR primer based on pmoA gene for detection of nitrite-dependent anaerobic methane-oxidizing bacteria from different ecological niches.	Appl. Microbiol. Biotechnol.	97(23)	10155-62	2013		
39227	24085308	Kurokawa S., Kuroda M., Mejima M., Nakamura R., Takahashi Y., Sagara H., Takeyama N., Satoh S., Kiyono H., Teshima R., Masumura T., Yuki Y.	RNAi-mediated suppression of endogenous storage proteins leads to a change in localization of overexpressed cholera toxin B-subunit and the allergen protein RAG2 in rice seeds.	Plant Cell Rep.	33(1)	75-87	2014		
39228	24130868	Shaik R., Ramakrishna W.	Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice.	PLoS ONE	8(10)	e77261	2013		
39229	24101203	Zhang Q., Yu H., Zhang F.Z., Shen Z.C.	Expression and purification of recombinant Human serum albumin from selectively terminable transgenic rice.	J Zhejiang Univ Sci B	14(10)	867-74	2013		
39230	24092451	Kupski L., Pagnussatt F.A., Buffon J.G., Furlong E.B.	Endoglucanase and Total Cellulase from Newly Isolated Rhizopus oryzae and Trichoderma reesei: Production, Characterization, and Thermal Stability.	Appl. Biochem. Biotechnol.	172(1)	458-68	2014		
39231	24096420	Studt L., Schmidt F.J., Jahn L., Sieber C.M., Connolly L.R., Niehaus E.M., Freitag M., Humpf H.U., Tudzynski B.	Two Histone Deacetylases, ffhda1 and FfHda2, Are Important for Fusarium fujikuroi Secondary Metabolism and Virulence.	Appl. Environ. Microbiol.	79(24)	7719-34	2013		
39232	24268165	Caverzan A., Bonifacio A., Carvalho F.E., Andrade C.M., Passaia G., Sch?nemann M., Maraschin Fdos S., Martins M.O., Teixeira F.K., Rauber R., Margis R., Silveira J.A., Margis-Pinheiro M.	The knockdown of chloroplastic ascorbate peroxidases reveals its regulatory role in the photosynthesis and protection under photo-oxidative stress in rice.	Plant Sci.	214	74-87	2014		
39233	24092004	Wang J., Wang W., Gu J.D.	Community structure and abundance of ammonia-oxidizing archaea and bacteria after conversion from soybean to rice paddy in albic soils of Northeast China.	Appl. Microbiol. Biotechnol.	98(6)	2765-78	2014		
39234	24085578	Liu W., Zhang D., Tang M., Li D., Zhu Y., Zhu L., Chen C.	This1 is a putative lipase that regulates tillering, plant height, and spikelet fertility in rice.	J. Exp. Bot.	64(14)	4389-402	2013	IAA20,D10,THIS1	OsIAA20,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,
39236	24142159	Yu Z., Chang M., Wu M., Yang G., Zhou S., Zhuang L.	Pseudomonas oryzae sp. nov. isolated from a paddy soil in South China.	Arch. Microbiol.	195(12)	815-22	2013		
39237	24088728	Yang L., Wang C., Holst-Jensen A., Morisset D., Lin Y., Zhang D.	Characterization of GM events by insert knowledge adapted re-sequencing approaches.	Sci Rep	3	2839	2013		
39238	24225178	Saha J., Chatterjee C., Sengupta A., Gupta K., Gupta B.	Genome-wide analysis and evolutionary study of sucrose non-fermenting 1-related protein kinase 2 (SnRK2) gene family members in Arabidopsis and Oryza.	Comput Biol Chem	49	59-70	2014		
39239	24122707	Hua B., L? Y., Wang J., Wen B., Cao Y., Wang X., Cui Z.	Dynamic Changes in the Composite Microbial System MC1 During and Following its Rapid Degradation of Lignocellulose.	Appl. Biochem. Biotechnol.	172(2)	951-62	2014		
39240	24170341	Wu T., Shen Y., Zheng M., Yang C., Chen Y., Feng Z., Liu X., Liu S., Chen Z., Lei C., Wang J., Jiang L., Wan J.	Gene SGL, encoding a kinesin-like protein with transactivation activity, is involved in grain length and plant height in rice.	Plant Cell Rep.	33(2)	235-44	2014		
39241	24075758	Surendiran G., Goh C., Le K., Zhao Z., Askarian F., Othman R., Nicholson T., Moghadasian P., Wang Y.J., Aliani M., Shen G., Beta T., Moghadasian M.H.	Wild rice (Zizania palustris L.) prevents atherogenesis in LDL receptor knockout mice.	Atherosclerosis	230(2)	284-92	2013		
39242	24154623	Uga Y., Yamamoto E., Kanno N., Kawai S., Mizubayashi T., Fukuoka S.	A major QTL controlling deep rooting on rice chromosome 4.	Sci Rep	3	3040	2013		
39243	24083427	Shinano T., Yoshimura T., Watanabe T., Unno Y., Osaki M., Nanjo Y., Komatsu S.	Effect of phosphorus levels on the protein profiles of secreted protein and root surface protein of rice.	J. Proteome Res.	12(11)	4748-56	2013		
39244	24185036	Gao J., Chen L., Yuan K., Huang H., Yan Z.	Ionic liquid pretreatment to enhance the anaerobic digestion of lignocellulosic biomass.	Bioresour. Technol.	150C	352-358	2013		
39245	24187491	Muhammad S.I., Maznah I., Mahmud R.B., Esmaile M.F., Zuki A.B.	Bone mass density estimation: Archimede's principle versus automatic X-ray histogram and edge detection technique in ovariectomized rats treated with germinated brown rice bioactives.	Clin Interv Aging	8	1421-31	2013		
39246	24123409	Aggarwal M., Burnsed J., Martin L.J., Northington F.J., Zhang J.	Imaging neurodegeneration in the mouse hippocampus after neonatal hypoxia-ischemia using oscillating gradient diffusion MRI.	Magn Reson Med	72(3)	829-40	2014		
39247	24101772	Reguera M., Peleg Z., Abdel-Tawab YM., Tumimbang E., Delatorre C.A., Blumwald E.	Stress-Induced CK Synthesis Increases Drought Tolerance through the Coordinated Regulation of Carbon and Nitrogen Assimilation in Rice.	Plant Physiol.	163(4)	1609-22	2013		
39248	24288473	Panhwar Q.A., Jusop S., Naher U.A., Othman R., Razi M.I.	Application of Potential Phosphate-Solubilizing Bacteria and Organic Acids on Phosphate Solubilization from Phosphate Rock in Aerobic Rice.	ScientificWorldJournal	2013	272409	2013		
39249	24136625	Wan G., Dang Z., Wu G., Parajulee M.N., Ge F., Chen F.	Single and fused trait transgenic Bt rice alter the species-specific responses of non-target planthoppers to elevated CO2 and temperature.	Pest Manag. Sci.	70(5)	734-42	2014		
39250	24158250	Li R., Xia J., Xu Y., Zhao X., Liu Y.G., Chen Y.	Characterization and genetic mapping of a Photoperiod-sensitive dwarf 1 locus in rice (Oryza sativa L.).	Theor. Appl. Genet.	127(1)	241-50	2014		
39251	24083549	Zhai Y., Zhang J., Sun Z., Dong X., He Y., Kang K., Liu Z., Zhang W.	Proteomic and Transcriptomic Analyses of Fecundity in the Brown Planthopper Nilaparvata lugens (St?l).	J. Proteome Res.	12(11)	5199-212	2013		
39252	24145853	Sama V.S., Rawat N., Sundaram R.M., Himabindu K., Naik B.S., Viraktamath B.C., Bentur J.S.	A putative candidate for the recessive gall midge resistance gene gm3 in rice identified and validated.	Theor. Appl. Genet.	127(1)	113-24	2014		
39253	24098512	Mathioni S.M., Patel N., Riddick B., Sweigard J.A., Czymmek K.J., Caplan J.L., Kunjeti S.G., Kunjeti S., Raman V., Hillman B.I., Kobayashi D.Y., Donofrio N.M.	Transcriptomics of the Rice Blast Fungus Magnaporthe oryzae in Response to the Bacterial Antagonist Lysobacter enzymogenes Reveals Candidate Fungal Defense Response Genes.	PLoS ONE	8(10)	e76487	2013		
39254	24014575	Nishida H., Ishihara D., Ishii M., Kaneko T., Kawahigashi H., Akashi Y., Saisho D., Tanaka K., Handa H., Takeda K., Kato K.	Phytochrome C is a key factor controlling long-day flowering in barley.	Plant Physiol.	163(2)	804-14	2013		
39255	24162153	Zhang H., Duan L., Dai J.S., Zhang C.Q., Li J., Gu M.H., Liu Q.Q., Zhu Y.	Major QTLs reduce the deleterious effects of high temperature on rice amylose content by increasing splicing efficiency of Wx pre-mRNA.	Theor. Appl. Genet.	127(2)	273-82	2014		
39256	24164326	Hwang J.E., Hwang S.G., Kim S.H., Lee K.J., Jang C.S., Kim J.B., Kim S.H., Ha B.K., Ahn J.W., Kang S.Y., Kim D.S.	Transcriptome profiling in response to different types of ionizing radiation and identification of multiple radio marker genes in rice.	Physiol Plant	150(4)	604-19	2014		
39257	24114051	Kiswara G., Lee J.H., Hur Y.J., Cho J.H., Lee J.Y., Kim S.Y., Sohn Y.B., Song Y.C., Nam M.H., Yun B.W., Kim K.M.	Genetic analysis and molecular mapping of low amylose gene du12(t) in rice (Oryza sativa L.).	Theor. Appl. Genet.	127(1)	51-7	2014	DU12	du12(t)
39258	24133650	Sarker P.K., Talukdar S.A., Deb P., Sayem S.A., Mohsina K.	Optimization and partial characterization of culture conditions for the production of alkaline protease from Bacillus licheniformis P003.	Springerplus	2	506	2013		
39259	24161240	Goo Y.M., Kim T.W., Lee M.K., Lee S.W.	Accumulation of PrLeg, a perilla legumin protein in potato tuber results in enhanced level of sulphur-containing amino acids.	C. R. Biol.	336(9)	433-9	2013		
39260	24143239	Cheung S.C., Long X., Liu L., Liu Q., Lan L., Tong P.C., Sun S.S.	Inhibition of Human MCF-7 Breast Cancer Cells and HT-29 Colon Cancer Cells by Rice-Produced Recombinant Human Insulin-Like Growth binding protein-3 (rhIGFBP-3).	PLoS ONE	8(10)	e77516	2013		
39261	24151305	Cantoro R., Crocco C.D., Benech-Arnold RL., Rodr?guez MV.	In vitro binding of Sorghum bicolor transcription factors ABI4 and ABI5 to a conserved region of a GA 2-OXIDASE promoter: possible role of this interaction in the expression of seed dormancy.	J. Exp. Bot.	64(18)	5721-35	2013		
39262	24132771	Song J., Wei X., Shao G., Sheng Z., Chen D., Liu C., Jiao G., Xie L., Tang S., Hu P.	The rice nuclear gene wlp1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions.	Plant Mol. Biol.	84(3)	301-14	2014	_	cp rpl13, cp RPL13, WLP1, RPL13
39263	24205105	Oh H.Y., Kim M.K., Lee M., Kim Y.O.	Macronutrient composition and sodium intake of diet are associated with risk of metabolic syndrome and hypertension in korean women.	PLoS ONE	8(10)	e78088	2013		
39264	24268168	Yang D.H., Kwak K.J., Kim M.K., Park S.J., Yang K.Y., Kang H.	Expression of Arabidopsis glycine-rich RNA-binding protein AtGRP2 or AtGRP7 improves grain yield of rice (Oryza sativa) under drought stress conditions.	Plant Sci.	214	106-12	2014		
39265	24046061	Schmidt R., Schippers J.H., Mieulet D., Watanabe M., Hoefgen R., Guiderdoni E., Mueller-Roeber B.	SALT-RESPONSIVE ERF1 Is a Negative Regulator of Grain Filling and Gibberellin-Mediated Seedling Establishment in Rice.	Mol Plant	7(2)	404-21	2014		
39266	24131596	Liu D., Li J., Zhao S., Zhang R., Wang M., Miao Y., Shen Y., Shen Q.	Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatus Z5 in the presence of different carbon sources.	Biotechnol Biofuels	6(1)	149	2013		
39267	24130823	Balsanelli E., Tuleski T.R., de Baura VA., Yates M.G., Chubatsu L.S., de Oliveira Pedrosa F., de Souza EM., Monteiro R.A.	Maize Root Lectins Mediate the Interaction with Herbaspirillum seropedicae via N-Acetyl Glucosamine Residues of Lipopolysaccharides.	PLoS ONE	8(10)	e77001	2013		
39268	24116562	Lee S.H., Chen W.K., Chin C.H., Huang W.J.	Exploring the dynamics of C/H and C/Cl exchanges in the C(3P) + C2H3Cl reaction.	J Chem Phys	139(13)	134301	2013		
39269	24100330	Tankrathok A., Iglesias-Fern?ndez J., Luang S., Robinson R.C., Kimura A., Rovira C., Hrmova M., Ketudat Cairns JR.	Structural analysis and insights into the glycon specificity of the rice GH1 Os7BGlu26 beta-D-mannosidase.	Acta Crystallogr. D Biol. Crystallogr.	69(Pt 10)	2124-35	2013		
39270	24494239	Jogawat A., Saha S., Bakshi M., Dayaman V., Kumar M., Dua M., Varma A., Oelm?ller R., Tuteja N., Johri A.K.	Piriformospora indica rescues growth diminution of rice seedlings during high salt stress.	Plant Signal Behav	8(10)		2013		
39271	24260743	Shafie N.H., Mohd Esa N., Ithnin H., Md Akim A., Saad N., Pandurangan A.K.	Preventive Inositol Hexaphosphate Extracted from Rice Bran Inhibits Colorectal Cancer through Involvement of Wnt/ beta -catenin and COX-2 Pathways.	Biomed Res Int	2013	681027	2013		
39272	24269347	Zhang J., Wang Y., Zhang L., Zhang R., Liu G., Cheng G.	Understanding changes in cellulose crystalline structure of lignocellulosic biomass during ionic liquid pretreatment by XRD.	Bioresour. Technol.	151	402-5	2014		
39273	24255867	Gopalakrishnan S., Srinivas V., Sree Vidya M., Rathore A.	Plant growth-promoting activities of Streptomyces spp. in sorghum and rice.	Springerplus	2	574	2013		
39274	24146224	Qin J., Scheuring C.F., Wei G., Zhi H., Zhang M., Huang J.J., Zhou X., Galbraith D.W., Zhang H.B.	Identification and characterization of a repertoire of genes differentially expressed in developing top ear shoots between a superior hybrid and its parental inbreds in Zea mays L.	Mol. Genet. Genomics	288(12)	691-705	2013		
39275	24173912	Kouzai Y., Nakajima K., Hayafune M., Ozawa K., Kaku H., Shibuya N., Minami E., Nishizawa Y.	CEBiP is the major chitin oligomer-binding protein in rice and plays a main role in the perception of chitin oligomers.	Plant Mol. Biol.	84(4-5)	519-28	2014		
39276	24174541	Chen J., Hu Q., Zhang Y., Lu C., Kuang H.	P-MITE: a database for plant miniature inverted-repeat transposable elements.	Nucleic Acids Res.	42(Database issue)	D1176-81	2014		
39277	24117971	Samalova M., Meyer A.J., Gurr S.J., Fricker M.D.	Robust anti-oxidant defences in the rice blast fungus Magnaporthe oryzae confer tolerance to the host oxidative burst.	New Phytol.	201(1)	556 573	2014		
39278	24280027	Hu S., Dong G., Xu J., Su Y., Shi Z., Ye W., Li Y., Li G., Zhang B., Hu J., Qian Q., Zeng D., Guo L.	A point mutation in the zinc finger motif of RID1/EHD2/OsId1 protein leads to outstanding yield-related traits in japonica rice variety Wuyunjing 7.	Rice (N Y)	6	24	2013		
39279	23963804	Chen J.G., Egner P.A., Ng D., Jacobson L.P., Munoz A., Zhu Y.R., Qian G., Wu F., Yuan J.M., Groopman J.D., Kensler T.W.	Reduced Aflatoxin Exposure Presages Decline in Liver Cancer Mortality in an Endemic Region of China.	Cancer Prev Res (Phila)	6(10)	1038-45	2013		
39280	23987653	Al-Tam FM., Adam H., Anjos A.D., Lorieux M., Larmande P., Ghesquiere A., Jouannic S., Shahbazkia H.R.	P-TRAP: a Panicle Trait Phenotyping Tool.	BMC Plant Biol.	13(1)	122	2013		
39281	23970084	Bian J.M., Shi H., Li C.J., Zhu C.L., Yu Q.Y., Peng X.S., Fu J.R., He X.P., Chen X.R., Hu L.F., Ouyang L.J., He H.H.	QTL mapping and correlation analysis for 1000-grain weight and percentage of grains with chalkiness in rice.	J. Genet.	92(2)	281-7	2013		
39282	23965973	Kim H.J., Lee J.Y., Yoon U.H., Lim S.H., Kim Y.M.	Effects of reduced prolamin on seed storage protein composition and the nutritional quality of rice.	Int J Mol Sci	14(8)	17073-84	2013		
39283	23990303	Moon H.Y., Van T.L., Cheon S.A., Choo J., Kim J.Y., Kang H.A.	Cell-surface expression of Aspergillus saitoi-derived functional alpha-1,2-mannosidase on Yarrowia lipolytica for glycan remodeling.	J. Microbiol.	51(4)	506-14	2013		
39284	23950663	Roshdy E., Rajaratnam V., Maitra S., Sabry M., Allah A.S., Al-Hendy A.	Treatment of symptomatic uterine fibroids with green tea extract: a pilot randomized controlled clinical study.	Int J Womens Health	5	477-86	2013		
39285	23907258	Wang S., Zhang S., Zhou T., Zeng J., Zhan J.	Design and application of an in vivo reporter assay for Phenylalanine ammonia-lyase.	Appl. Microbiol. Biotechnol.	97(17)	7877-85	2013		
39286	23986463	Tusting L.S., Thwing J., Sinclair D., Fillinger U., Gimnig J., Bonner K.E., Bottomley C., Lindsay S.W.	Mosquito larval source management for controlling malaria.	Cochrane Database Syst Rev	8	CD008923	2013		
39287	23974369	Han P., Li M., Gu J.D.	Biases in community structures of ammonia/ammonium-oxidizing microorganisms caused by insufficient DNA extractions from Baijiang soil revealed by comparative analysis of coastal wetland sediment and rice paddy soil.	Appl. Microbiol. Biotechnol.	97(19)	8741-56	2013		
39288	23939432	Wallstr?m SV., Florez-Sarasa I., Ara?jo WL., Aidemark M., Fern?ndez Fern?ndez M., Fernie A.R., Ribas-Carb? M., Rasmusson A.G.	Suppression of the external mitochondrial NADPH dehydrogenase, NDB1, in Arabidopsis thaliana affects central metabolism and vegetative growth.	Mol Plant	7(2)	356-68	2014		
39289	23984709	Sheikh A.H., Raghuram B., Jalmi S.K., Wankhede D.P., Singh P., Sinha A.K.	Interaction between two rice mitogen activated protein kinases and its possible role in plant defense.	BMC Plant Biol.	13(1)	121	2013		
39290	23975147	Sarkar N.K., Kim Y.K., Grover A.	Coexpression network analysis associated with call of rice seedlings for encountering heat stress.	Plant Mol. Biol.	84(1-2)	125-43	2014		
39291	23979931	Gong X., Jiang Q., Xu J., Zhang J., Teng S., Lin D., Dong Y.	Disruption of the Rice plastid ribosomal protein S20 Leads to Chloroplast Developmental Defects and Seedling Lethality.	G3 (Bethesda)	3(10)	1769-77	2013		
39292	23934749	Zhu G., Koszelak-Rosenblum M., Malkowski M.G.	Crystal Structures of alpha-Dioxygenase from Oryza sativa: Insights into Substrate Binding and Activation by Hydrogen Peroxide.	Protein Sci.	22(10)	1432-8	2013		
39293	23914840	Seo J., Kim S.J., Shin S.K.	Coupled Unimolecular Dissociation Kinetics of Bromotoluene Radical Cations.	J Phys Chem A	117(46)	11924-32	2013		
39294	23975246	Yundaeng C., Somta P., Tangphatsornruang S., Wongpornchai S., Srinives P.	Gene discovery and functional marker development for fragrance in sorghum (Sorghum bicolor (L.) Moench).	Theor. Appl. Genet.	126(11)	2897-906	2013		
39295	23990797	Liu L., Shang-Guan K., Zhang B., Liu X., Yan M., Zhang L., Shi Y., Zhang M., Qian Q., Li J., Zhou Y.	Brittle Culm1, a COBRA-like protein, Functions in Cellulose Assembly through Binding Cellulose Microfibrils.	PLoS Genet.	9(8)	e1003704	2013		
39296	23954326	Zhang K., Niu S., Di D., Shi L., Liu D., Cao X., Miao H., Wang X., Han C., Yu J., Li D., Zhang Y.	Selection of reference genes for gene expression studies in virus-infected monocots using quantitative real-time PCR.	J. Biotechnol.	168(1)	7-14	2013		
39297	23933238	Liu S., Dong Y., Li Y., Bao L., Liu H., Li H.	Chemical constituents from the rice fermented with the edible mushroom Pleurotus eryngii and their quinone oxidoreductase 1 inducing effect.	Fitoterapia	91	9-14	2013		
39298	23951162	Xiao Y., Xia W., Yang Y., Mason A.S., Lei X., Ma Z.	Characterization and Evolution of Conserved MicroRNA through Duplication Events in Date Palm (Phoenix dactylifera).	PLoS ONE	8(8)	e71435	2013		
39299	23940254	Werner A.K., Medina-Escobar N., Zulawski M., Sparkes I.A., Cao F.Q., Witte C.P.	The ureide degrading reactions of purine ring catabolism employ four amino- and amidohydrolases in Arabidopsis and soybean.	Plant Physiol.	163(2)	672-81	2013		
39300	23955173	Qi L.L., Wu J.J., Friebe B., Qian C., Gu Y.Q., Fu D.L., Gill B.S.	Sequence organization and evolutionary dynamics of Brachypodium-specific centromere retrotransposons.	Chromosome Res.	21(5)	507-21	2013		
39301	23974358	Tuteja R., Tuteja N.	Analysis of DNA repair helicase UvrD from Arabidopsis thaliana and Oryza sativa.	Plant Physiol. Biochem.	71C	254-260	2013		
39302	23971515	Alberton D., M?ller-Santos M., Brusamarello-Santos LC., Valdameri G., Cordeiro F.A., Yates M.G., Pedrosa F.D., de Souza EM.	Comparative proteomics analysis of the rice roots colonized by Herbaspirillum seropedicae strain SmR1 reveals induction of the methionine recycling in the plant host.	J. Proteome Res.	12(11)	4757-68	2013		
39303	23973431	Mirza M.A., Capozzi L., Xu Y., McCullough L.D., Liu F.	Knockout of vascular early response gene worsens chronic stroke outcomes in neonatal mice.	Brain Res. Bull.	98	111-21	2013		
39304	23952103	Lu L., Shao D., Qiu X., Sun L., Yan W., Zhou X., Yang L., He Y., Yu S., Xing Y.	Natural variation and artificial selection in four genes determine grain shape in rice.	New Phytol.	200(4)	1269-80	2013		
39305	23905647	Wang W., Xia H., Yang X., Xu T., Si H.J., Cai X.X., Wang F., Su J., Snow A.A., Lu B.R.	A novel 5-enolpyruvoylshikimate-3-phosphate (EPSP) synthase transgene for glyphosate resistance stimulates growth and fecundity in weedy rice (Oryza sativa) without herbicide.	New Phytol.	202(2)	679-88	2014		
39306	23977227	Bai H., Euring D., Volmer K., Janz D., Polle A.	The Nitrate Transporter (NRT) Gene Family in Poplar.	PLoS ONE	8(8)	e72126	2013		
39307	23917116	Debnath T., Park S.R., Kim da H., Jo J.E., Lim B.O.	Anti-Oxidant and Anti-Inflammatory Activities of Inonotus obliquus and Germinated Brown Rice Extracts.	Molecules	18(8)	9293-304	2013		
39308	23935502	Ramanujam R., Calvert M.E., Selvaraj P., Naqvi N.I.	The Late Endosomal HOPS Complex Anchors Active G-protein Signaling Essential for Pathogenesis in Magnaporthe oryzae.	PLoS Pathog.	9(8)	e1003527	2013		
39309	23943138	Chen B., Zhang A., Lu Q., Kuang T., Lu C., Wen X.	Characterization of photosystem I in rice (Oryza sativa L.) seedlings upon exposure to random positioning machine.	Photosyn. Res.	116(1)	93-105	2013		
39310	23759099	Ogata T., Kida Y., Tochigi M., Matsushita Y.	Analysis of the cell death-inducing ability of the ethylene response factors in group VIII of the AP2/ERF family.	Plant Sci.	209	12-23	2013		
39311	23951075	Zeng J., Zhang M., Sun X.	Molecular hydrogen is involved in phytohormone signaling and stress responses in plants.	PLoS ONE	8(8)	e71038	2013		
39312	23956243	Kawakatsu T., Kawahara Y., Itoh T., Takaiwa F.	A Whole-Genome Analysis of a Transgenic Rice Seed-Based Edible Vaccine Against Cedar pollen Allergy.	DNA Res.	20(6)	623-31	2013		
39313	23965250	Wang Y., Li P., Majkova Z., Bever C.R., Kim H.J., Zhang Q., Dechant J.E., Gee S.J., Hammock B.D.	Isolation of Alpaca Anti-Idiotypic Heavy-Chain Single-Domain Antibody for the Aflatoxin Immunoassay.	Anal. Chem.	85(17)	8298-303	2013		
39314	23975886	Suzuki K., Ohmori Y., Nagao M.	Accumulation of nitrate and nitrite in chilled leaves of rice seedlings is induced by high root temperature.	Plant Cell Physiol.	54(11)	1769-79	2013		
39315	23973864	Taniguchi M., Ikeda A., Nakamichi S.I., Ishiyama Y., Saitoh E., Kato T., Ochiai A., Tanaka T.	Antimicrobial activity and mechanism of action of a novel cationic alpha-helical octadecapeptide derived from heat shock protein 70 of rice.	Peptides	48	147-55	2013		
39316	23982951	Taniguchi M., Takahashi N., Takayanagi T., Ikeda A., Ishiyama Y., Saitoh E., Kato T., Ochiai A., Tanaka T.	Effect of substituting arginine and lysine with alanine on antimicrobial activity and the mechanism of action of a cationic dodecapeptide (CL(14-25)), a partial sequence of cyanate lyase from rice.	Biopolymers	102(1)	58-68	2014		
39317	23951288	Wang M., Yuan D., Gao W., Li Y., Tan J., Zhang X.	A Comparative Genome Analysis of PME and PMEI Families Reveals the Evolution of Pectin Metabolism in Plant Cell Walls.	PLoS ONE	8(8)	e72082	2013		
39318	23926950	Li B., Liu H., Zhang Y., Kang T., Zhang L., Tong J., Xiao L., Zhang H.	Constitutive expression of cell wall invertase genes increases grain yield and starch content in maize.	Plant Biotechnol. J.	11(9)	1080-91	2013		
39319	23986771	Sharma R., Cao P., Jung K.H., Sharma M.K., Ronald P.C.	Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research.	Front Plant Sci	4	330	2013		
39320	23963074	Qiu X.Q., Tong C.Y., Zhong Z.Q., Wang W.Q., Zuo Y.W., Huang Y., Zhang L., Zhang X.L., Zhang H.X., Li R.Q., Wang J., Chen H., Li Y.Y., Wu G., Wang H.	An engineered multidomain fungicidal peptide against plant fungal pathogens.	Sheng Li Xue Bao	65(4)	417-432	2013		
39321	23925294	Tokuhara D., Alvarez B., Mejima M., Hiroiwa T., Takahashi Y., Kurokawa S., Kuroda M., Oyama M., Kozuka-Hata H., Nochi T., Sagara H., Aladin F., Marcotte H., Frenken L.G., Iturriza-G?mara M., Kiyono H., Hammarstr?m L., Yuki Y.	Rice-based oral antibody fragment prophylaxis and therapy against rotavirus infection.	J. Clin. Invest.	123(9)	3829-38	2013		
39322	23943779	Zhang Y., Gao P., Xing Z., Jin S., Chen Z., Liu L., Constantino N., Wang X., Shi W., Yuan J.S., Dai S.Y.	Application of an Improved Proteomics Method for Abundant Protein Cleanup: Molecular and Genomic Mechanisms Study in Plant Defense.	Mol. Cell Proteomics	12(11)	3431-42	2013		
39323	23951364	Xiong Z.Q., Tu X.R., Wei S.J., Huang L., Li X.H., Lu H., Tu G.Q.	The Mechanism of Antifungal Action of a New Polyene Macrolide Antibiotic Antifungalmycin 702 from Streptomyces padanus JAU4234 on the Rice Sheath Blight Pathogen Rhizoctonia solani.	PLoS ONE	8(8)	e73884	2013		
39324	23943011	Li L., Huang Q., Zhang S., Zhao S.	Effect of Enhanced UV-B Radiation and Low-Energy N(+) Ion Beam Radiation on the Response of Photosynthesis, Antioxidant Enzymes, and Lipid Peroxidation in Rice (Oryza sativa) Seedlings.	Appl. Biochem. Biotechnol.	171(4)	1072-83	2013		
39325	23945310	Li W., Wu C., Hu G., Xing L., Qian W., Si H., Sun Z., Wang X., Fu Y., Liu W.	Characterization and Fine Mapping of a Novel Rice Narrow Leaf Mutant nal9.	J Integr Plant Biol	55(11)	1016-25	2013	VYL	OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL
39326	23918958	Madsen C.K., Dionisio G., Holme I.B., Holm P.B., Brinch-Pedersen H.	High mature grain phytase activity in the Triticeae has evolved by duplication followed by neofunctionalization of the purple acid phosphatase phytase (PAPhy) gene.	J. Exp. Bot.	64(11)	3111-23	2013		
39327	23956122	Xie K., Yang Y.	RNA-guided Genome Editing in Plants Using A CRISPR-Cas System.	Mol Plant	6(6)	1975-83	2013		
39328	23929733	Tirol-Padre A., Rai M., Gathala M., Sharma S., Kumar V., Sharma P.C., Sharma D.K., Wassmann R., Ladha J.	Assessing the performance of the photo-acoustic infrared gas monitor for measuring CO2 , N2 O and CH4 fluxes in two major cereal rotations.	Glob Chang Biol	20(1)	287-99	2014		
39329	23971749	Miceli Sopo S., Greco M., Monaco S., Tripodi S., Calvani M.	Food protein-induced enterocolitis syndrome, from practice to theory.	Expert Rev Clin Immunol	9(8)	707-15	2013		
39330	23857358	Yamaguchi K., Yamada K., Kawasaki T.	Receptor-like cytoplasmic kinases are pivotal components in pattern recognition receptor-mediated signaling in plant immunity.	Plant Signal Behav	8(10)		2013		
39331	23828545	Rusconi F., Simeoni F., Francia P., Cominelli E., Conti L., Riboni M., Simoni L., Martin C.R., Tonelli C., Galbiati M.	The Arabidopsis thaliana MYB60 promoter provides a tool for the spatio-temporal control of gene expression in stomatal guard cells.	J. Exp. Bot.	64(11)	3361-71	2013		
39332	23250723	Kim T.G., Kim M.Y., Huy N.X., Kim S.H., Yang M.S.	M cell-targeting ligand and consensus dengue virus envelope protein domain III fusion protein production in transgenic rice calli.	Mol. Biotechnol.	54(3)	880-7	2013		
39333	23628887	Lin J., Xu Y., Brookes P.C., He Y., Xu J.	Spatial and temporal variations in pentachlorophenol dissipation at the aerobic--anaerobic interfaces of flooded paddy soils.	Environ. Pollut.	178	433-40	2013		
39334	23847545	Adeniran I., Hancox J.C., Zhang H.	In silico investigation of the short QT syndrome, using human ventricle models incorporating electromechanical coupling.	Front Physiol	4	166	2013		
39335	23832522	Thounaojam T.C., Panda P., Choudhury S., Patra H.K., Panda S.K.	Zinc ameliorates copper-induced oxidative stress in developing rice (Oryza sativa L.) seedlings.	Protoplasma	251(1)	61-9	2014		
39336	23846670	Du H., Wu N., Chang Y., Li X., Xiao J., Xiong L.	Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice.	Plant Mol. Biol.	83(4-5)	475-88	2013		
39337	23916816	Guillodo Y., Simon T., Le Goff A., Saraux A.	Interest of rehabilitation in healing and preventing recurrence of ankle sprains.	Ann Phys Rehabil Med	56(7-8)	503-14	2013		
39338	23873414	Heinnickel M.L., Grossman A.R.	The GreenCut: re-evaluation of physiological role of previously studied proteins and potential novel protein functions.	Photosyn. Res.	116(2-3)	427-36	2013		
39339	23936103	Kurtoglu K.Y., Kantar M., Lucas S.J., Budak H.	Unique and Conserved MicroRNAs in Wheat Chromosome 5D Revealed by Next-Generation Sequencing.	PLoS ONE	8(7)	e69801	2013		
39340	23816039	Becker D.J., French B., Morris P.B., Silvent E., Gordon R.Y.	Phytosterols, red yeast rice, and lifestyle changes instead of statins: a randomized, double-blinded, placebo-controlled trial.	Am. Heart J.	166(1)	187-96	2013		
39341	23871874	Choi O., Lee Y., Han I., Kim H., Goo E., Kim J., Hwang I.	A simple and sensitive biosensor strain for detecting toxoflavin using beta-galactosidase activity.	Biosens Bioelectron	50C	256-261	2013		
39342	23873186	Li J., Endo T.R., Saito M., Ishikawa G., Nakamura T., Nasuda S.	Homoeologous relationship of rye chromosome arms as detected with wheat PLUG markers.	Chromosoma	122(6)	555-64	2013		
39343	23857260	Kong W., Zhang C., Liu F., Nie P., He Y.	Rice seed cultivar identification using near-infrared hyperspectral imaging and multivariate data analysis.	Sensors (Basel)	13(7)	8916-27	2013		
39344	23827132	Choi W.H., Gwon S.Y., Ahn J., Jung C.H., Ha T.Y.	Cooked rice prevents hyperlipidemia in hamsters fed a high-fat/cholesterol diet by the regulation of the expression of hepatic genes involved in lipid metabolism.	Nutr Res	33(7)	572-9	2013		
39345	23886623	Tseng I.C., Hong C.Y., Yu S.M., Ho T.H.	Abscisic Acid- and stress-induced highly proline-rich glycoproteins regulate root growth in rice.	Plant Physiol.	163(1)	118-34	2013	_,_,_,_	OsRePRP2.1, RePRP2.1,OsRePRP1.2, RePRP1.2,OsRePRP2.2, RePRP2.2,OsPRP, OsPRP1, PRP1, OsRePRP1.1, RePRP1.1
39346	23987811	Tuncel A., Okita T.W.	Improving starch yield in cereals by over-expression of ADPglucose pyrophosphorylase: Expectations and unanticipated outcomes.	Plant Sci.	211	52-60	2013		
39347	23846215	Rahman M., Haegeman A., Rahman B.M., Gheysen G.	Molecular cloning and expression analysis of novel putative effector genes from Meloidogyne graminicola.	J. Appl. Genet.	54(4)	493	2013		
39348	23841539	Xu L., Law S.R., Murcha M.W., Whelan J., Carrie C.	The dual targeting ability of type II NAD(P)H dehydrogenases arose early in land plant evolution.	BMC Plant Biol.	13	100	2013		
39349	23902261	Rebollar A., L?pez-Garc?a B.	PAF104, a synthetic peptide to control the rice blast disease by blocking the appressorium formation in Magnaporthe oryzae.	Mol. Plant Microbe Interact.	26(12)	1407-16	2013		
39350	23838485	Li B., Shi J.B., Wang X., Meng M., Huang L., Qi X.L., He B., Ye Z.H.	Variations and constancy of mercury and methylmercury accumulation in rice grown at contaminated paddy field sites in three Provinces of China.	Environ. Pollut.	181	91-7	2013		
39351	23839078	Jiang H., Wu Q., Jin J., Sheng L., Yan H., Cheng B., Zhu S.	Genome-wide identification and expression profiling of ankyrin-repeat gene family in maize.	Dev. Genes Evol.	223(5)	303-18	2013		
39352	23818197	Thakur S., Gupta Y.K., Singh P.K., Rathour R., Variar M., Prashanthi S.K., Singh A.K., Singh U.D., Chand D., Rana J.C., Singh N.K., Sharma T.R.	Molecular diversity in rice blast resistance gene Pi-ta makes it highly effective against dynamic population of Magnaporthe oryzae.	Funct. Integr. Genomics	13(3)	309-22	2013		
39353	23894667	Rustgi S., Shafqat M.N., Kumar N., Baenziger P.S., Ali M.L., Dweikat I., Campbell B.T., Gill K.S.	Genetic Dissection of Yield and Its Component Traits Using High-Density Composite Map of Wheat Chromosome 3A: Bridging Gaps between QTLs and Underlying Genes.	PLoS ONE	8(7)	e70526	2013		
39354	23888157	Chen H., Zheng L., Jia D., Zhang P., Chen Q., Liu Q., Wei T.	Rice gall dwarf virus exploits tubules to facilitate viral spread among cultured insect vector cells derived from leafhopper Recilia dorsalis.	Front Microbiol	4	206	2013		
39355	23835917	Xiong F., Liu J., Jiang J., Zhong R., He L., Han Z., Li Z., Tang X., Tang R.	Molecular Profiling of Genetic Variability in Domesticated Groundnut (Arachis hypogaea L.) Based on ISJ, URP, and DAMD Markers.	Biochem. Genet.	51(11-12)	889-900	2013		
39356	23847632	Ricachenevsky F.K., Menguer P.K., Sperotto R.A.	kNACking on heaven's door: how important are NAC transcription factors for leaf senescence and Fe/Zn remobilization to seeds?	Front Plant Sci	4	226	2013		
39357	23852165	Shan T., Sun W., Wang X., Fu X., Sun W., Zhou L.	Purification of ustiloxins a and B from rice false smut balls by macroporous resins.	Molecules	18(7)	8181-99	2013		
39358	23883648	Blagoev K.B., Shukla K., Levine H.	We need theoretical physics approaches to study living systems.	Phys Biol	10(4)	040201	2013		
39359	23887491	Huei Kao C.	Role of rice heme oxygenase in lateral root formation.	Plant Signal Behav	8(10)		2013		
39360	23842755	Khan A.L., Waqas M., Khan A.R., Hussain J., Kang S.M., Gilani S.A., Hamayun M., Shin J.H., Kamran M., Al-Harrasi A., Yun B.W., Adnan M., Lee I.J.	Fungal endophyte Penicillium janthinellum LK5 improves growth of ABA-deficient tomato under salinity.	World J. Microbiol. Biotechnol.	29(11)	2133-44	2013		
39361	23908658	Studholme D.J., Harris B., Le Cocq K., Winsbury R., Perera V., Ryder L., Ward J.L., Beale M.H., Thornton C.R., Grant M.	Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture-insights from genomics.	Front Plant Sci	4	258	2013		
39362	23902579	Li H., Jiang L., Youn J.H., Sun W., Cheng Z., Jin T., Ma X., Guo X., Wang J., Zhang X., Wu F., Wu C., Kim S.K., Wan J.	A comprehensive genetic study reveals a crucial role of CYP90D2/D2 in regulating plant architecture in rice (Oryza sativa).	New Phytol.	200(4)	1076-88	2013		
39363	23832334	Nakaya M., Shojo A., Hirai H., Matsumoto K., Kitamura S.	Hypolipidemic Effects of Starch and gamma-Oryzanol from wx/ae Double-Mutant Rice on BALB/c.KOR-Apoe(shl) Mice.	Biosci. Biotechnol. Biochem.	77(7)	1435-40	2013		
39364	23866314	Verhoeven V., Lopez Hartmann M., Remmen R., Wens J., Apers S., Van Royen P.	Red yeast rice lowers cholesterol in physicians - a double blind, placebo controlled randomized trial.	BMC Complement Altern Med	13(1)	178	2013		
39365	23827162	Hagl S., Kocher A., Schiborr C., Eckert S.H., Ciobanu I., Birringer M., El-Askary H., Helal A., Khayyal M.T., Frank J., Muller W.E., Eckert G.P.	Rice bran extract protects from mitochondrial dysfunction in guinea pig brains.	Pharmacol. Res.	76C	17-27	2013		
39366	23889895	Shao F., Lu S.	Genome-wide identification, molecular cloning, expression profiling and posttranscriptional regulation analysis of the Argonaute gene family in Salvia miltiorrhiza, an emerging model medicinal plant.	BMC Genomics	14	512	2013		
39367	23865888	Hardoim P.R., Nazir R., Sessitsch A., Elhottov? D., Korenblum E., van Overbeek LS., van Elsas JD.	The new species Enterobacter oryziphilus sp. nov. and Enterobacter oryzendophyticus sp. nov. are key inhabitants of the endosphere of rice.	BMC Microbiol.	13	164	2013		
39368	23888162	Miro B., Ismail A.M.	Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.).	Front Plant Sci	4	269	2013		
39369	23828614	Lyu J., Zhang S., Dong Y., He W., Zhang J., Deng X., Zhang Y., Li X., Li B., Huang W., Wan W., Yu Y., Li Q., Li J., Liu X., Wang B., Tao D., Zhang G., Wang J., Xu X., Hu F., Wang W.	Analysis of elite variety tag SNPs reveals an important allele in upland rice.	Nat Commun	4	2138	2013		
39370	23952748	Byeon Y., Lee K., Park Y.I., Park S., Back K.	Molecular cloning and functional analysis of Serotonin N-acetyltransferase from the cyanobacterium Synechocystis sp. PCC 6803.	J. Pineal Res.	55(4)	371-6	2013		
39371	23844166	Ali N., Paul S., Gayen D., Sarkar S.N., Datta K., Datta S.K.	Development of Low Phytate Rice by RNAi Mediated Seed-Specific Silencing of Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Gene (IPK1).	PLoS ONE	8(7)	e68161	2013		
39372	23836309	Frederiksen B., Kroehl M., Lamb M.M., Seifert J., Barriga K., Eisenbarth G.S., Rewers M., Norris J.M.	Infant Exposures and Development of Type 1 Diabetes Mellitus: The Diabetes Autoimmunity Study in the Young (DAISY).	JAMA Pediatr	167(9)	808-15	2013		
39373	23832371	Shimizu T., Miyamoto K., Miyamoto K., Minami E., Nishizawa Y., Iino M., Nojiri H., Yamane H., Okada K.	OsJAR1 Contributes Mainly to Biosynthesis of the Stress-Induced Jasmonoyl-Isoleucine Involved in Defense Responses in Rice.	Biosci. Biotechnol. Biochem.	77(7)	1556-64	2013	_,TIFY11C,JAR1,TIFY10A,TIFY11A,TIFY11B	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b
39374	23871145	Ji S.H., Gururani M.A., Chun S.C.	Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars.	Microbiol. Res.	169(1)	83-98	2013		
39375	23845039	Gagat P., Body? A., Mackiewicz P.	How protein targeting to primary plastids via the endomembrane system could have evolved? A new hypothesis based on phylogenetic studies.	Biol. Direct	8	18	2013		
39376	23583672	Yeo M.K., Nam D.H.	Influence of different types of nanomaterials on their bioaccumulation in a paddy microcosm: a comparison of TiO2 nanoparticles and nanotubes.	Environ. Pollut.	178	166-72	2013		
39377	23727802	Lee S.S., Lee J.H., Lee I.	Strain Improvement by Overexpression of the laeA Gene in Monascus pilosus for the Production of Monascus-Fermented Rice.	J. Microbiol. Biotechnol.	23(7)	959-65	2013		
39378	23808777	Hosseinpour-Niazi S., Sohrab G., Asghari G., Mirmiran P., Moslehi N., Azizi F.	Dietary glycemic index, glycemic load, and cardiovascular disease risk factors: Tehran Lipid and Glucose Study.	Arch Iran Med	16(7)	401-7	2013		
39379	23824139	Wang Z., Feng J., Pang M., Pan S., Zhang H.	Multicolor and bright white upconversion luminescence from rice-shaped lanthanide doped BiPO4 submicron particles.	Dalton Trans	42(34)	12101-8	2013		
39380	23879865	Streubel J., Pesce C., Hutin M., Koebnik R., Boch J., Szurek B.	Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae.	New Phytol.	200(3)	808-19	2013		
39381	23832352	Ishii A., Kumasaka M., Nagashima Y., Nakajima Y., Kuramochi K., Sugawara F., Narukawa M., Kamakura T.	A eukaryotic molecular target candidate of roxithromycin: fungal differentiation as a sensitive drug target analysis system.	Biosci. Biotechnol. Biochem.	77(7)	1539-47	2013		
39382	23867599	Su H., Zhang S., Yuan X., Chen C., Wang X.F., Hao Y.J.	Genome-wide analysis and identification of stress-responsive genes of the NAM-ATAF1,2-CUC2 transcription factor family in apple.	Plant Physiol. Biochem.	71C	11-21	2013		
39383	23899096	Muhammad S.I., Ismail M., Mahmud R.B., Salisu A.M., Zakaria Z.A.	Germinated brown rice and its bioactives modulate the activity of uterine cells in oophorectomised rats as evidenced by gross cytohistological and immunohistochemical changes.	BMC Complement Altern Med	13(1)	198	2013		
39384	23775595	Yang W., Gao M., Yin X., Liu J., Xu Y., Zeng L., Li Q., Zhang S., Wang J., Zhang X., He Z.	Control of Rice Embryo Development, shoot apical meristem Maintenance, and grain yield by a Novel Cytochrome P450.	Mol Plant	6(6)	1945-60	2013		
39385	23893901	Wang J., Xie Z., Gao J., Liu Y., Wang W., Huang L., Wang J.	Molecular cloning and characterization of a ryanodine receptor gene in brown planthopper (BPH), Nilaparvata?lugens (St?l).	Pest Manag. Sci.	70(5)	790-7	2014		
39386	23845012	Dadacz-Narloch B., Kimura S., Kurusu T., Farmer E.E., Becker D., Kuchitsu K., Hedrich R.	On the cellular site of two-pore channel TPC1 action in the Poaceae.	New Phytol.	200(3)	663-74	2013		
39387	23648762	Payormhorm J., Kangvansaichol K., Reubroycharoen P., Kuchonthara P., Hinchiranan N.	Pt/Al?O?-catalytic deoxygenation for upgrading of Leucaena leucocephala-pyrolysis oil.	Bioresour. Technol.	139	128-35	2013		
39388	23900904	Zhuang Z.H., Que S.J., Gao Y.M., Yuan J., Ye Z., Du M., Lin G.M., Liu L.C., Wang S.H.	Artificial antigen synthesis and the development of polyclonal antibody-based immunoassay for citreoviridin determination.	World J. Microbiol. Biotechnol.	30(1)	343-9	2014		
39389	23865514	Zhang Y., Chao K., Sun J., Su Z., Pan X., Zhang J., Wang R.	Theoretical study on the gas phase reaction of allyl alcohol with hydroxyl radical.	J Phys Chem A	117(30)	6629-40	2013		
39390	23866310	Azmi N.H., Ismail N., Imam M.U., Ismail M.	Ethyl acetate extract of germinated brown rice attenuates hydrogen peroxide-induced oxidative stress in human SH-SY5Y neuroblastoma cells: role of anti-apoptotic, pro-survival and antioxidant genes.	BMC Complement Altern Med	13	177	2013		
39391	23892148	Chen Y., Zhai S.R., Liu N., Song Y., An Q.D., Song X.W.	Dye removal of activated carbons prepared from NaOH-pretreated rice husks by low-temperature solution-processed carbonization and H3PO4 activation.	Bioresour. Technol.	144	401-9	2013		
39392	23883359	Cheng Y., An S., Liu X., Chang C., Zou Y., Huang L., Zhong J., Liu Q., Jiang Z., Zhou J., Zhang L.H.	A Non-ribosomal Peptide Synthase Containing A Stand-alone Condensation Domain Is Essential for Phytotoxin Zeamine Biosynthesis.	Mol. Plant Microbe Interact.	26(11)	1294-301	2013		
39393	23889160	Byeon Y., Park S., Kim Y.S., Back K.	Microarray analysis of genes differentially expressed in melatonin-rich transgenic rice expressing a sheep serotonin N-acetyltransferase.	J. Pineal Res.	55(4)	357-63	2013		
39394	23874922	Landraud P., Chuzeville S., Billon-Grande G., Poussereau N., Bruel C.	Adaptation to pH and Role of PacC in the Rice Blast Fungus Magnaporthe oryzae.	PLoS ONE	8(7)	e69236	2013		
39395	23890351	Cicero A.F., Derosa G., Parini A., Maffioli P., D'Addato S., Reggi A., Giovannini M., Borghi C.	Red yeast rice improves lipid pattern, high-sensitivity C-reactive protein, and vascular remodeling parameters in moderately hypercholesterolemic Italian subjects.	Nutr Res	33(8)	622-8	2013		
39396	23830033	Kahar P., Taku K., Tanaka S.	Multiple effects of swelling by sodium bicarbonate after delignification on enzymatic saccharification of rice straw.	J. Biosci. Bioeng.	116(6)	725-33	2013		
39397	23800416	Rothenberg S.E., Yu X., Zhang Y.	Prenatal methylmercury exposure through maternal rice ingestion: insights from a feasibility pilot in Guizhou Province, China.	Environ. Pollut.	180	291-8	2013		
39398	23762267	Wang J., Chen L., Wang Y., Zhang J., Liang Y., Xu D.	A computational systems biology study for understanding salt tolerance mechanism in rice.	PLoS ONE	8(6)	e64929	2013		
39399	23811121	Lee M.H., Cho E.J., Wi S.G., Bae H., Kim J.E., Cho J.Y., Lee S., Kim J.H., Chung B.Y.	Divergences in morphological changes and antioxidant responses in salt-tolerant and salt-sensitive rice seedlings after salt stress.	Plant Physiol. Biochem.	70	325-35	2013		
39400	23783412	Wu T.M., Lin W.R., Kao Y.T., Hsu Y.T., Yeh C.H., Hong C.Y., Kao C.H.	Identification and characterization of a novel chloroplast/mitochondria co-localized glutathione reductase 3 involved in salt stress response in rice.	Plant Mol. Biol.	83(4-5)	379-90	2013	_,_,_	OsGR3, GR3,OsGR1, GR1, OsGR2,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2
39401	23748783	Mou G., Wang K., Xu D., Zhou G.	Evaluation of three RT-qPCR-based miRNA detection methods using seven rice miRNAs.	Biosci. Biotechnol. Biochem.	77(6)	1349-53	2013		
39402	23807744	Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T., Liu B.S.	Genetic structure of rice black-streaked dwarf virus populations in China.	Arch. Virol.	158(12)	2505-15	2013		
39403	23748708	Li L., Liu X., Xie K., Wang Y., Liu F., Lin Q., Wang W., Yang C., Lu B., Liu S., Chen L., Jiang L., Wan J.	qLTG-9, a stable quantitative trait locus for low-temperature germination in rice (Oryza sativa L.).	Theor. Appl. Genet.	126(9)	2313-22	2013		
39404	23810669	Hashimoto M., Obara K., Ozono M., Furuyashiki M., Ikeda T., Suda Y., Fukase K., Fujimoto Y., Shigehisa H.	Separation and characterization of the immunostimulatory components in unpolished rice black vinegar (kurozu).	J. Biosci. Bioeng.	116(6)	688-96	2013		
39405	23825955	Wiemann P., Sieber C.M., von Bargen KW., Studt L., Niehaus E.M., Espino J.J., Hu? K., Michielse C.B., Albermann S., Wagner D., Bergner S.V., Connolly L.R., Fischer A., Reuter G., Kleigrewe K., Bald T., Wingfield B.D., Ophir R., Freeman S., Hippler M., Smith K.M., Brown D.W., Proctor R.H., M?nsterk?tter M., Freitag M., Humpf H.U., G?ldener U., Tudzynski B.	Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites.	PLoS Pathog.	9(6)	e1003475	2013		
39406	23794015	Jia Y., Zhou J.Y., He J.X., Du W., Bu Y.Q., Liu C.H., Dai C.C.	Distribution of the Entomopathogenic Fungus Beauveria bassiana in Rice Ecosystems and Its Effect on Soil Enzymes.	Curr. Microbiol.	67(5)	631-6	2013		
39407	23816581	Yang Y., Lu X.S., Li D.L., Yu Y.J.	Effects of Environmental Lead Pollution on Blood Lead and sex hormone Levels among Occupationally Exposed Group in An E-waste Dismantling Area.	Biomed. Environ. Sci.	26(6)	474-84	2013		
39408	23853510	Chen M., Zhao Z., Chen L., Zhou F., Zhong Z., Jiang L., Wan J.	Genetic analysis and fine mapping of a semi-dwarf gene in a centromeric region in rice (Oryza sativa L.).	Breed. Sci.	63(2)	164-8	2013		
39409	23771580	Deshmukh R.K., Vivancos J., Gu?rin V., Sonah H., Labb? C., Belzile F., B?langer RR.	Identification and functional characterization of silicon transporters in soybean using comparative genomics of major intrinsic proteins in Arabidopsis and rice.	Plant Mol. Biol.	83(4-5)	303-15	2013		
39410	23986916	Tan L., Chen S., Wang T., Dai S.	Proteomic insights into seed germination in response to environmental factors.	Proteomics	13(12-13)	1850-70	2013		
39411	23735202	Simon D., Straumann A., Dahinden C., Simon H.U.	Frequent sensitization to Candida albicans and profilins in adult eosinophilic esophagitis.	Allergy	68(7)	945-8	2013		
39412	23880034	Stokowa-So?tys K., Je?owska-Bojczuk M.	A rice fungicide blasticidin S efficiently binds Cu(II) ions and prevents DNA from metal-induced damage.	J. Inorg. Biochem.	127C	73-78	2013		
39413	23765738	Zhu Y.Q., Yu C.X., Li Y., Zhu Q.Q., Zhou L., Cao C., Yu T.T., Du F.P.	Research on the changes in wettability of rice (Oryza sativa.) leaf surfaces at different development stages using the OWRK method.	Pest Manag. Sci.	70(3)	462-9	2013		
39414	23750250	Zhang H.L., Bai X.L., Xue J.F., Chen Z.D., Tang H.M., Chen F.	Emissions of CH4 and N2O under different tillage systems from double-cropped paddy fields in Southern China.	PLoS ONE	8(6)	e65277	2013		
39415	23755304	Sauco S., G?mez J., Barboza F.R., Lercari D., Defeo O.	Modified whole effluent toxicity test to assess and decouple wastewater effects from environmental gradients.	PLoS ONE	8(6)	e66285	2013		
39416	23898996	Gopalakrishnan S., Vadlamudi S., Apparla S., Bandikinda P., Vijayabharathi R., Bhimineni R.K., Rupela O.	Evaluation of Streptomyces spp. for their plant-growth-promotion traits in rice.	Can. J. Microbiol.	59(8)	534-9	2013		
39417	23753178	Lakshmanan M., Zhang Z., Mohanty B., Kwon J.Y., Choi H.Y., Nam H.J., Kim D.I., Lee D.Y.	Elucidating Rice Cell Metabolism under Flooding and Drought Stresses Using Flux-Based Modeling and Analysis.	Plant Physiol.	162(4)	2140-50	2013		
39418	23790232	Summons R.E., Bird L.R., Gillespie A.L., Pruss S.B., Roberts M., Sessions A.L.	Lipid biomarkers in ooids from different locations and ages: evidence for a common bacterial flora.	Geobiology	11(5)	420-36	2013		
39419	23797042	Gartland K., Bruschi F., Dundar M., Gahan P., Viola Magni M., Akbarova Y.	Progress towards the 'Golden Age' of biotechnology.	Curr. Opin. Biotechnol.	24 Suppl 1	S6-S13	2013		
39420	23770899	Ma K., Conrad R., Lu Y.	Dry/Wet cycles change the activity and population dynamics of methanotrophs in rice field soil.	Appl. Environ. Microbiol.	79(16)	4932-9	2013		
39421	23776591	Li J., Andika I.B., Shen J., Lv Y., Ji Y., Sun L., Chen J.	Characterization of rice black-streaked dwarf virus- and rice stripe virus-derived siRNAs in singly and doubly infected insect vector Laodelphax striatellus.	PLoS ONE	8(6)	e66007	2013		
39422	23860021	Lee C.Y., Jan M.S., Yu M.C., Lin C.C., Wei J.C., Shih H.C.	Relationship between Adiponectin and Leptin, and Blood Lipids in Hyperlipidemia Patients Treated with Red Yeast Rice.	Forsch Komplementmed	20(3)	197-203	2013		
39423	23846143	Sharma H.K., Lahkar S., Kanta Nath L.	Formulation and in vitro evaluation of metformin hydrochloride loaded microspheres prepared with polysaccharide extracted from natural sources.	Acta Pharm	63(2)	209-22	2013		
39424	23853508	Yang R., Zhou Y., Cao Y., Yin Z., Yang L., Li J.	The transformation of the photo-thermo sensitive genic male-sterile line 261S of rice via an expression vector containing the anti-Waxy gene.	Breed. Sci.	63(2)	147-53	2013		
39425	23748134	Xu S., Luo J., Pan X., Liang X., Wu J., Zheng W., Chen C., Hou Y., Ma H., Zhou M.	Proteome analysis of the plant-pathogenic bacterium Xanthomonas oryzae pv. oryzae.	Biochim. Biophys. Acta	1834(8)	1660-70	2013		
39426	23835359	Ueda Y., Wu L., Frei M.	A critical comparison of two high-throughput ascorbate analyses methods for plant samples.	Plant Physiol. Biochem.	70	418-23	2013		
39427	23777608	Mujahid H., Tan F., Zhang J., Nallamilli B.R., Pendarvis K., Peng Z.	Nuclear proteome response to cell wall removal in rice (Oryza sativa).	Proteome Sci	11(1)	26	2013		
39428	23810898	Battaglia E., Klaubauf S., Vallet J., Ribot C., Lebrun M.H., de Vries RP.	Xlr1 is involved in the transcriptional control of the pentose catabolic pathway, but not hemi-cellulolytic enzymes in Magnaporthe oryzae.	Fungal Genet. Biol.	57	76-84	2013		
39429	23749877	Bart?k T., T?lgyesi L., Sz?csi A., Mesterh?zy A., Bart?k M., Gyimes E., V?ha A.	Detection of Previously Unknown Fumonisin P Analogue Mycotoxins in a Fusarium verticillioides Culture by High-Performance Liquid Chromatography-Electrospray Ionization Time-of-Flight and Ion Trap Mass Spectrometry.	J Chromatogr Sci	52(6)	508-13	2014		
39430	23731867	Siripornadulsil S., Siripornadulsil W.	Cadmium-tolerant bacteria reduce the uptake of cadmium in rice: potential for microbial bioremediation.	Ecotoxicol. Environ. Saf.	94	94-103	2013		
39431	23813016	Soda N., Kushwaha H.R., Soni P., Singla-Pareek SL., Pareek A.	A suite of new genes defining salinity stress tolerance in seedlings of contrasting rice genotypes.	Funct. Integr. Genomics	13(3)	351-65	2013		
39432	23799885	Xu M., Xu Z., Liu B., Kong F., Tsubokura Y., Watanabe S., Xia Z., Harada K., Kanazawa A., Yamada T., Abe J.	Genetic variation in four maturity genes affects photoperiod insensitivity and PHYA-regulated post-flowering responses of soybean.	BMC Plant Biol.	13	91	2013		
39433	23810152	Palmer D.J., Metcalfe J., Makrides M., Gold M.S., Quinn P., West C.E., Loh R., Prescott S.L.	Early regular egg exposure in infants with eczema: A randomized controlled trial.	J. Allergy Clin. Immunol.	132(2)	387-392.e1	2013		
39434	23782532	Du Y., Zhang H., Hong L., Wang J., Zheng X., Zhang Z.	Acetolactate synthases MoILV2 and MoIlv6 are required for infection-related morphogenesis in Magnaporthe oryzae.	Mol. Plant Pathol.	14(9)	870-84	2013		
39435	23803749	Narusaka Y., Shinya T., Narusaka M., Motoyama N., Shimada H., Murakami K., Shibuya N.	Presence of LYM2 dependent but CERK1 independent disease resistance in Arabidopsis.	Plant Signal Behav	8(9)		2013		
39436	23773148	Chen Z.C., Yokosho K., Kashino M., Zhao F.J., Yamaji N., Ma J.F.	Adaptation to acidic soil is achieved by increased numbers of cis-acting elements regulating ALMT1 expression in Holcus lanatus.	Plant J.	76(1)	10-23	2013		
39437	23847440	Wang C., Ye J., Tang W., Liu Z., Zhu C., Wang M., Wan J.	Loop Nucleotide Polymorphism in a Putative miRNA precursor Associated with seed length in Rice (Oryza sativa L.).	Int. J. Biol. Sci.	9(6)	578-86	2013	ALPHACA10,BHC,MIR2923A,RIM2-M53	OsalphaCA10, alphaCA10,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,osa-MIR2923a, MIR2923a,Rim2-M53
39438	23791937	Sudhamalla B., Kumar M., Kumar R.S., Sashi P., Yasin U.M., Ramakrishna D., Rao P.N., Bhuyan A.K.	Enzyme dimension of the ribosomal protein S4 across plant and animal kingdoms.	Biochim. Biophys. Acta	1830(11)	5335-41	2013		
39439	23759057	Tian Y.S., Xu J., Peng R.H., Xiong A.S., Xu H., Zhao W., Fu X.Y., Han H.J., Yao Q.H.	Mutation by DNA shuffling of 5-enolpyruvylshikimate-3-phosphate synthase from Malus domestica for improved glyphosate resistance.	Plant Biotechnol. J.	11(7)	829-38	2013		
39440	23812819	Su'udi M., Park J.M., Kang W.R., Hwang D.J., Kim S., Ahn I.P.	Quantification of rice sheath blight progression caused by Rhizoctonia solani.	J. Microbiol.	51(3)	380-8	2013		
39441	23860229	Baldoni E., Mattana M., Locatelli F., Consonni R., Cagliani L.R., Picchi V., Abbruscato P., Genga A.	Analysis of transcript and metabolite levels in Italian rice (Oryza sativa L.) cultivars subjected to osmotic stress or benzothiadiazole treatment.	Plant Physiol. Biochem.	70	492-503	2013		
39442	23820171	Jia H., Chen W., Yu X., Wu X., Li S., LIU H., Liao J., Liu W., Mi M., Liu L., Cheng D.	Black Rice Anthocyanidins Prevent Retinal Photochemical Damage via Involvement of AP-1/NF-kappaB/Caspase-1 pathway in Sprague-Dawley Rats.	J. Vet. Sci.	14(3)	345-53	2013		
39443	23766367	Pound M.P., French A.P., Atkinson J.A., Wells D.M., Bennett M.J., Pridmore T.	RootNav: Navigating Images of Complex Root Architectures.	Plant Physiol.	162(4)	1802-14	2013		
39444	23731343	Hoser R., Zurczak M., Lichocka M., Zuzga S., Dadlez M., Samuel M.A., Ellis B.E., Stuttmann J., Parker J.E., Hennig J., Krzymowska M.	Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1.	New Phytol.	200(1)	158-71	2013		
39445	23758479	Dehury B., Sahu M., Sarma K., Sahu J., Sen P., Modi M.K., Sharma G.D., Choudhury M.D., Barooah M.	Molecular Phylogeny, Homology Modeling, and Molecular Dynamics Simulation of Race-Specific Bacterial Blight Disease Resistance Protein (xa5) of Rice: A Comparative Agriproteomics Approach.	OMICS	17(8)	423-38	2013		
39446	23489060	Seo J.K., Wu J., Lii Y., Li Y., Jin H.	Contribution of small RNA pathway components in plant immunity.	Mol. Plant Microbe Interact.	26(6)	617-25	2013		
39447	23885202	Moreira C.N., Di-Nizo CB., de Jesus Silva MJ., Yonenaga-Yassuda Y., Ventura K.	A remarkable autosomal heteromorphism in Pseudoryzomys simplex 2n = 56; FN = 54-55 (Rodentia, Sigmodontinae).	Genet. Mol. Biol.	36(2)	201-6	2013		
39448	23755297	Cheng X., Xiang Y., Xie H., Xu C.L., Xie T.F., Zhang C., Li Y.	Molecular characterization and functions of fatty acid and retinoid binding protein gene (Ab-FAR-1) in Aphelenchoides besseyi.	PLoS ONE	8(6)	e66011	2013		
39449	23816327	Rong H., Tang Y., Zhang H., Wu P., Chen Y., Li M., Wu G., Jiang H.	The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice.	J. Plant Physiol.	170(15)	1367-73	2013		
39450	23840426	Wang D., He Y., Li Y., Luan D., Zhai F., Yang X., Ma G.	Joint Association of Dietary Pattern and Physical Activity Level with Cardiovascular Disease Risk Factors among Chinese Men: A Cross-Sectional Study.	PLoS ONE	8(6)	e66210	2013		
39451	23799924	Zhang K.J., Zhu W.C., Rong X., Zhang Y.K., Ding X.L., Liu J., Chen D.S., Du Y., Hong X.Y.	The complete mitochondrial genomes of two rice planthoppers, Nilaparvata lugens and Laodelphax striatellus: conserved genome rearrangement in Delphacidae and discovery of new characteristics of atp8 and tRNA genes.	BMC Genomics	14	417	2013		
39452	23739066	Khandanlou R., Bin Ahmad M., Shameli K., Kalantari K.	Synthesis and characterization of rice straw/Fe3O4 nanocomposites by a quick precipitation method.	Molecules	18(6)	6597-607	2013		
39453	23767977	Ye H., Tang A., Huang L., Wang Y., Yang C., Hou Y., Peng H., Zhang F., Teng F.	Facile one-step synthesis and transformation of Cu(I)-doped zinc sulfide nanocrystals to Cu(1.94)S-ZnS heterostructured nanocrystals.	Langmuir	29(27)	8728-35	2013		
39454	23748354	Pompeiano A., Fanucchi F., Guglielminetti L.	Amylolytic activity and carbohydrate levels in relation to coleoptile anoxic elongation in Oryza sativa genotypes.	J. Plant Res.	126(6)	787-94	2013		
39455	23735506	Yu L., Chen X., Wang Z., Wang S., Wang Y., Zhu Q., Li S., Xiang C.	Arabidopsis enhanced drought tolerance1/HOMEODOMAIN GLABROUS11 confers drought tolerance in transgenic rice without yield penalty.	Plant Physiol.	162(3)	1378-91	2013		
39456	23749158	Hasnat A., Pervin M., Lim B.O.	Acetylcholinesterase inhibition and in vitro and in vivo antioxidant activities of Ganoderma lucidum grown on germinated brown rice.	Molecules	18(6)	6663-78	2013		
39457	23761487	Menguer P.K., Farthing E., Peaston K.A., Ricachenevsky F.K., Fett J.P., Williams L.E.	Functional analysis of the rice vacuolar zinc transporter OsMTP1.	J. Exp. Bot.	64(10)	2871-83	2013		
39458	23762023	Park S.Y., Choi J., Lim S.E., Lee G.W., Park J., Kim Y., Kong S., Kim S.R., Rho H.S., Jeon J., Chi M.H., Kim S., Khang C.H., Kang S., Lee Y.H.	Global expression profiling of transcription factor genes provides new insights into pathogenicity and stress responses in the rice blast fungus.	PLoS Pathog.	9(6)	e1003350	2013		
39459	23748707	Liu W.X., Liu H.L., Qu le Q.	Embryo-specific expression of soybean oleosin altered oil body morphogenesis and increased lipid content in transgenic rice seeds.	Theor. Appl. Genet.	126(9)	2289-97	2013		
39460	23803741	Yoon J., Kim J., Duy P.K., Kim M., Kang S., Chung H.	Diffuser-incorporated transmission NIR measurement for reliable analysis of packed granular samples.	Analyst	138(17)	4922-32	2013		
39461	23686299	Mauch F., Best R., Bauer G.	[Current treatment concepts for muscular injuries].	Unfallchirurg	116(6)	488-96	2013		
39462	23795884	Wu Y., Wang Q., Hillwig M.L., Peters R.J.	Picking sides: Distinct roles for CYP76M6 and -8 in rice oryzalexin biosynthesis.	Biochem. J.	454(2)	209-16	2013		
39463	23853514	Shinada H., Iwata N., Sato T., Fujino K.	Genetical and morphological characterization of cold tolerance at fertilization stage in rice.	Breed. Sci.	63(2)	197-204	2013		
39464	23792387	Wang J., Luo Y., Teng Y., Ma W., Christie P., Li Z.	Soil contamination by phthalate esters in Chinese intensive vegetable production systems with different modes of use of plastic film.	Environ. Pollut.	180	265-73	2013		
39465	23792660	Hickert L.R., Souza-Cruz PB., Rosa C.A., Ayub M.A.	Simultaneous saccharification and co-fermentation of un-detoxified rice hull hydrolysate by Saccharomyces cerevisiae ICV D254 and Spathaspora arborariae NRRL Y-48658 for the production of ethanol and xylitol.	Bioresour. Technol.	143	112-6	2013		
39466	23825566	Zhong X., Zhang H., Zhao Y., Sun Q., Hu Y., Peng H., Zhou D.X.	The rice NAD(+)-dependent histone deacetylase OsSRT1 targets preferentially to stress- and metabolism-related genes and transposable elements.	PLoS ONE	8(6)	e66807	2013		
39467	23190115	Shimizu T., Ogamino T., Hiraguri A., Nakazono-Nagaoka E., Uehara-Ichiki T., Nakajima M., Akutsu K., Omura T., Sasaya T.	Strong resistance against Rice grassy stunt virus is induced in transgenic rice plants expressing double-stranded RNA of the viral genes for nucleocapsid or movement proteins as targets for RNA interference.	Phytopathology	103(5)	513-9	2013		
39468	23717500	Huang X., Liu X., Chen X., Snyder A., Song W.Y.	Members of the XB3 Family from Diverse Plant Species Induce Programmed Cell Death in Nicotiana benthamiana.	PLoS ONE	8(5)	e63868	2013		
39469	23634840	Alqueres S., Meneses C.H., Rouws L., Rothballer M., Baldani J.I., Schmid M., Hartmann A.	The bacterial superoxide dismutase and gluthatione reductase are crucial for endophytic colonization of rice roots by Gluconacetobacter diazotrophicus strain PAL5.	Mol. Plant Microbe Interact.	26(8)	937-45	2013		
39470	23686450	Guo C., Ge X., Ma H.	The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages.	Plant Mol. Biol.	82(3)	239-53	2013	_	OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL
39471	23672717	Cui Y., Zou L., Zou H., Li Y., Zakria M., Chen G.	HrpE3 is a type III effector protein required for full virulence of Xanthomonas oryzae pv. oryzicola in rice.	Mol. Plant Pathol.	14(7)	678-92	2013		
39472	23715017	Michalovova M., Vyskot B., Kejnovsky E.	Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: size, relative age and chromosomal localization.	Heredity	111(4)	314-20	2013		
39473	23639970	Naito Y., Tomita M.	Identification of an Isogenic Semidwarf Rice Cultivar Carrying the Green Revolution sd1 Gene by Multiplex Codominant ASP-PCR and SSR Markers.	Biochem. Genet.	51(7-8)	530-42	2013		
39474	23636694	Albermann S., Elter T., Teubner A., Krischke W., Hirth T., Tudzynski B.	Characterization of novel mutants with an altered gibberellin spectrum in comparison to different wild-type strains of Fusarium fujikuroi.	Appl. Microbiol. Biotechnol.	97(17)	7779-90	2013		
39475	23718541	Voitsik A.M., Muench S., Deising H.B., Voll L.M.	Two recently duplicated maize NAC transcription factor paralogs are induced in response to Colletotrichum graminicola infection.	BMC Plant Biol.	13(1)	85	2013		
39476	23691254	Puranik S., Sahu P.P., Mandal S.N., B VS., Parida S.K., Prasad M.	Comprehensive Genome-Wide Survey, Genomic Constitution and Expression Profiling of the NAC Transcription Factor Family in Foxtail Millet (Setaria italica L.).	PLoS ONE	8(5)	e64594	2013		
39477	23718947	Ma B., He S.J., Duan K.X., Yin C.C., Chen H., Yang C., Xiong Q., Song Q.X., Lu X., Chen H.W., Zhang W.K., Lu T.G., Chen S.Y., Zhang J.S.	Identification of rice ethylene-response mutants and characterization of MHZ7/OsEIN2 in distinct ethylene response and yield trait regulation.	Mol Plant	6(6)	1830-48	2013	ERF2,_,GLP8-12,GLP8-11,_,_,SUB1B,_,_,BU1,_,EIN2,Y37,SALT,SUB1C,_,_,NAC2,_	OsWR4, WR4, OsERF#002, OsERF002, ERF002, OsERF2, AP2/EREBP#100, AP2/EREBP100,,OsGLP8-12,OsGLP8-11, RGLP1, OsRGLP1,Osh36, OsH36, H36, OsAMTR1, AMTR1,,Sub1B, OsERF#063, OsERF063, ERF063, OsERF63, ERF63, AP2/EREBP#166, AP2/EREBP166,,OsL55,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,prx22, OsPRX22,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,SHR5,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,OsFKBP46, FKBP46
39478	23733059	Huang J., Liu J., Han C.D.	Formin homology 1 (OsFH1) regulates submergence-dependent root hair development in rice plants.	Plant Signal Behav	8(8)	e24970	2013		
39479	23731869	Furukawa T., Sawaguchi C., Watanabe A., Takahashi M., Nigorikawa M., Furukawa K., Iimura Y., Kajita S., Oguchi T., Ito Y., Sonoki T.	Application of fungal laccase fused with cellulose-binding domain to develop low-lignin rice plants.	J. Biosci. Bioeng.	116(5)	616-9	2013		
39480	23682119	Tian L., Dai L.L., Yin Z.J., Fukuda M., Kumamaru T., Dong X.B., Xu X.P., Qu L.Q.	Small GTPase Sar1 is crucial for proglutelin and alpha-globulin export from the endoplasmic reticulum in rice endosperm.	J. Exp. Bot.	64(10)	2831-45	2013	SAR1A,SAR1B,_,SAR1C	OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a,OsARL1f, ARL1f, OsSar1b, Sar1b,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d,OsARL1d, ARL1d, OsSar1c, Sar1c
39481	23697584	Kozuka C., Yabiku K., Takayama C., Matsushita M., Shimabukuro M.	Natural food science based novel approach toward prevention and treatment of obesity and type 2 diabetes: Recent studies on brown rice and gamma-oryzanol.	Obes Res Clin Pract	7(3)	e165-72			
39482	23703395	Serra T.S., Figueiredo D.D., Cordeiro A.M., Almeida D.M., Louren?o T., Abreu I.A., Sebasti?n A., Fernandes L., Contreras-Moreira B., Oliveira M.M., Saibo N.J.	OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.	Plant Mol. Biol.	82(4-5)	439-55	2013	RMC,ERF99,EREBP1	OsRMC, OsRLK, OsDUF26, DUF26,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84
39483	23661287	Tao F., Zhang Z., Shi W., Liu Y., Xiao D., Zhang S., Zhu Z., Wang M., Liu F.	Single rice growth period was prolonged by cultivars shifts but yield was damaged by climate change during 1981-2009 in China, and late rice was just opposite.	Glob Chang Biol	19(10)	3200-9	2013		
39484	23634838	Guo H., Song X., Xie C., Huo Y., Zhang F., Chen X.Y., Geng Y., Fang R.	Rice yellow stunt rhabdovirus protein 6 suppresses systemic RNA silencing by blocking RDR6-mediated secondary siRNA synthesis.	Mol. Plant Microbe Interact.	26(8)	927-36	2013		
39485	23676354	Lu M.X., Du Y.Z., Cao S.S., Liu P., Li J.	Molecular Cloning and Characterization of the First Caspase in the Striped Stem Borer, Chilo suppressalis.	Int J Mol Sci	14(5)	10229-41	2013		
39486	23679139	Akbar Ali M., Violi A.	Reaction Pathways for the Thermal Decomposition of Methyl Butanoate.	J. Org. Chem.	78(12)	5898-5908	2013		
39487	23645867	Yeang H.Y.	Solar rhythm in the regulation of photoperiodic flowering of long-day and short-day plants.	J. Exp. Bot.	64(10)	2643-52	2013		
39488	23659677	Kalpana B.J., Sindhulakshmi M., Pandian S.K.	Amylase enzyme from Bacillus subtilis S8-18: A potential desizing agent from marine environment.	Biotechnol. Appl. Biochem.	61(2)	134-44	2014		
39489	23770592	Hu Y., Zhu N., Wang X., Yi Q., Zhu D., Lai Y., Zhao Y.	Analysis of rice Snf2 family proteins and their potential roles in epigenetic regulation.	Plant Physiol. Biochem.	70C	33-42	2013		
39490	23672828	Caminiti L., Salzano G., Crisafulli G., Porcaro F., Pajno G.B.	Food protein induced enterocolitis syndrome caused by rice beverage.	Ital J Pediatr	39	31	2013		
39491	23667043	Wang C., Bao Y., Wang Q., Zhang H.	Introduction of the rice CYP714D1 gene into Populus inhibits expression of its homologous genes and promotes growth, biomass production, and xylem fibre length in transgenic trees.	J. Exp. Bot.	64(10)	2847-57	2013		
39492	23674687	Faulkner C., Petutschnig E., Benitez-Alfonso Y., Beck M., Robatzek S., Lipka V., Maule A.J.	LYM2-dependent chitin perception limits molecular flux via plasmodesmata.	Proc. Natl. Acad. Sci. U.S.A.	110(22)	9166-70	2013		
39493	23689259	Wei X., Zhang X., Shao G., He J., Jiao G., Xie L., Sheng Z., Tang S., Hu P.	Fine mapping of BH1, a gene controlling lemma and palea development in rice.	Plant Cell Rep.	32(9)	1455-63	2013		
39494	23717458	Degenkolbe T., Do P.T., Kopka J., Zuther E., Hincha D.K., K?hl KI.	Identification of drought tolerance markers in a diverse population of rice cultivars by expression and metabolite profiling.	PLoS ONE	8(5)	e63637	2013		
39495	23713079	Koo B.H., Yoo S.C., Park J.W., Kwon C.T., Lee B.D., An G., Zhang Z., Li J., Li Z., Paek N.C.	Natural variation in OsPRR37 regulates heading date and contributes to rice cultivation at a wide range of latitudes.	Mol Plant	6(6)	1877-88	2013	HD3A,HD2,GHD7	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
39496	23695503	Li X., Hou S., Gao Q., Zhao P., Chen S., Qi D., Lee B.H., Cheng L., Liu G.	LcSAIN1, a Novel Salt-Induced Gene from SheepGrass, Confers Salt Stress Tolerance in Transgenic Arabidopsis and Rice.	Plant Cell Physiol.	54(7)	1172-85	2013		
39497	23782215	Nezhad R.M., Shahpiri A., Mirlohi A.	Discrimination between two rice metallothionein isoforms belonging to type 1 and type 4 in metal-binding ability.	Biotechnol. Appl. Biochem.	60(3)	275-82	2013	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
39498	23675421	Zhu X.Y., Li P., Yang Y.B., Liu M.L.	Xuezhikang, extract of red yeast rice, improved abnormal hemorheology, suppressed caveolin-1 and increased eNOS expression in atherosclerotic rats.	PLoS ONE	8(5)	e62731	2013		
39499	23694780	Hirano K., Hino S., Oshima K., Okajima T., Nadano D., Urisu A., Takaiwa F., Matsuda T.	Allergenic potential of rice pollen proteins: expression, immuno-cross reactivity and IgE-binding.	J. Biochem.	154(2)	195-205	2013		
39500	23650998	Sun L., Li X., Fu Y., Zhu Z., Tan L., Liu F., Sun X., Sun X., Sun C.	GS6, a member of the GRAS gene family, negatively regulates grain size in rice.	J Integr Plant Biol	55(10)	938-49	2013		
39501	23656875	Soni P., Kumar G., Soda N., Singla-Pareek SL., Pareek A.	Salt Overly Sensitive pathway members are influenced by diurnal rhythm in rice.	Plant Signal Behav	8(7)	e24738	2013		
39502	23750161	Hirose T., Aoki N., Harada Y., Okamura M., Hashida Y., Ohsugi R., Akio M., Hirochika H., Terao T.	Disruption of a rice gene for alpha-glucan water dikinase, OsGWD1, leads to hyperaccumulation of starch in leaves but exhibits limited effects on growth.	Front Plant Sci	4	147	2013		
39503	23738013	Wankhede D.P., Misra M., Singh P., Sinha A.K.	Rice mitogen activated protein kinase kinase and mitogen activated protein kinase interaction network revealed by in-silico docking and yeast two-hybrid approaches.	PLoS ONE	8(5)	e65011	2013		
39504	23708376	de Almeida SL., Schmidt E.C., Pereira D.T., Kreusch M., de L Felix MR., Osorio L.K., de Paula Martins R., Latini A., Ramlov F., Chow F., Maraschin M., Rodrigues A.C., Bouzon Z.L.	Effect of ultraviolet-B radiation in laboratory on morphological and ultrastructural characteristics and physiological parameters of selected cultivar of Oryza sativa L.	Protoplasma	250(6)	1303-13	2013		
39505	23702967	Lu M.X., Hua J., Cui Y.D., Du Y.Z.	Five small heat shock protein genes from Chilo suppressalis: characteristics of gene, genomic organization, structural analysis, and transcription profiles.	Cell Stress Chaperones	19(1)	91-104	2013		
39506	23665591	Franck W.L., Gokce E., Oh Y., Muddiman D.C., Dean R.A.	Temporal analysis of the Magnaporthe oryzae proteome during conidial germination and cAMP-mediated appressorium formation.	Mol. Cell Proteomics	12(8)	2249-65	2013		
39507	23766026	Yan H.W., Hong L., Zhou Y.Q., Jiang H.Y., Zhu S.W., Fan J., Cheng B.J.	A genome-wide analysis of the ERF gene family in sorghum.	Genet. Mol. Res.	12(2)	2038-55	2013		
39508	23718837	Wu Y., Bao Y., Xie L., Su Y., Chu R., He W., Huang J., Wang J., Zhang H.	Fine mapping and identification of blast resistance gene Pi-hk1 in a broad-spectrum resistant Japonica rice landrace.	Phytopathology	103(11)	1162-8	2013	PIHK1	Pi-hk1
39509	23651319	Yang C., Li D., Mao D., Liu X., Ji C., Li X., Zhao X., Cheng Z., Chen C., Zhu L.	Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa?L.).	Plant Cell Environ.	36(12)	2207-18	2013	_,MIR319B,MIR319A,_	OsPCF5, PCF5,OsmiR319b, Osa-miR319b,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsPCF8, PCF8
39510	23659345	Bahadur R.P., Basak J.	Molecular modeling of protein-protein interaction to decipher the structural mechanism of nonhost resistance in rice.	J. Biomol. Struct. Dyn.	32(4)	669-81	2014		
39511	23702306	Utkina L.L., Andreev Y.A., Rogozhin E.A., Korostyleva T.V., Slavokhotova A.A., Oparin P.B., Vassilevski A.A., Grishin E.V., Egorov T.A., Odintsova T.I.	Genes encoding 4-Cys antimicrobial peptides in wheat Triticum kiharae Dorof. et Migush.: multimodular structural organization, instraspecific variability, distribution and role in defence.	FEBS J.	280(15)	3594-608	2013		
39512	23667703	Song D., Cho W.K., Park S.H., Jo Y., Kim K.H.	Evolution of and horizontal gene transfer in the endornavirus genus.	PLoS ONE	8(5)	e64270	2013		
39513	23733066	Sahoo R.K., Tuteja N.	Effect of salinity tolerant PDH45 transgenic rice on physicochemical properties, enzymatic activities and microbial communities of rhizosphere soils.	Plant Signal Behav	8(8)	e24950	2013		
39514	23656311	Wang L., Jiang W., Zhang Y., Wang S., Ma R., Sun W.	Ax21-triggered immunity plays a significant role in rice defense against Xanthomonas oryzae pv. oryzicola.	Phytopathology			2013		
39515	23755054	Wang M., Gruissem W., Bhullar N.K.	nicotianamine synthase overexpression positively modulates iron homeostasis-related genes in high iron rice.	Front Plant Sci	4	156	2013		
39516	23634958	Gaash R., Elazar M., Mizrahi K., Avramov-Mor M., Berezin I., Shaul O.	Phylogeny and a structural model of plant MHX transporters.	BMC Plant Biol.	13	75	2013		
39517	23649259	Himeno N., Saburi W., Wakuta S., Takeda R., Matsuura H., Nabeta K., Sansenya S., Ketudat Cairns JR., Mori H., Imai R., Matsui H.	Identification of Rice beta-Glucosidase with High Hydrolytic Activity towards Salicylic Acid beta-D-Glucoside.	Biosci. Biotechnol. Biochem.	77(5)	934-9	2013		
39518	23700450	Sun X.Q., Zhang M.X., Yu J.Y., Jin Y., Ling B., Du J.P., Li G.H., Qin Q.M., Cai Q.N.	Glutathione S-Transferase of Brown Planthoppers (Nilaparvata lugens) Is Essential for Their Adaptation to Gramine-Containing Host Plants.	PLoS ONE	8(5)	e64026	2013		
39519	23659665	Liu M.T., Wang A.L., Sun Z., Li J.J., Wu X.L., Liu Y.X., Shang X.Y.	Cytotoxic monacolin analogs from Monascus purpureus-fermented rice.	J Asian Nat Prod Res	15(6)	600-9	2013		
39520	23686337	Yoshikawa T., Ozawa S., Sentoku N., Itoh J.I., Nagato Y., Yokoi S.	Change of shoot architecture during juvenile-to-adult phase transition in soybean.	Planta	238(1)		2013		
39521	23692054	Liu T., Liu H., Zhang H., Xing Y.	Validation and characterization of Ghd7.1, a major QTL with pleiotropic effects on spikelets per panicle, plant height, and heading date in rice (Oryza sativa L.).	J Integr Plant Biol	55(10)	917-27	2013		
39522	23663326	Zan Y., Ji Y., Zhang Y., Yang S., Song Y., Wang J.	Genome-wide identification, characterization and expression analysis of populus leucine-rich repeat receptor-like protein kinase genes.	BMC Genomics	14	318	2013		
39523	23674369	Dawar C., Jain S., Kumar S.	Insight into the 3D structure of ADP-glucose pyrophosphorylase from rice (Oryza sativa L.).	J Mol Model	19(8)	3351-67	2013		
39524	23663106	Dardick C., Callahan A., Horn R., Ruiz K.B., Zhebentyayeva T., Hollender C., Whitaker M., Abbott A., Scorza R.	PpeTAC1 promotes the horizontal growth of branches in peach trees and is a member of a functionally conserved gene family found in diverse plants species.	Plant J.	75(4)	618-30	2013		
39525	23711378	Wang G.H., Wang X.Q., Qiao F., Zhu Z.R., Cheng J.A.	Development and preliminary application of a triplex real-time polymerase chain reaction assay for evaluating predation on three planthoppers in a rice ecosystem.	Mol Ecol Resour	13(5)	811-9	2013		
39526	23705659	Chi W.C., Chen Y.A., Hsiung Y.C., Fu S.F., Chou C.H., Trinh N.N., Chen Y.C., Huang H.J.	Autotoxicity mechanism of Oryza sativa: transcriptome response in rice roots exposed to ferulic acid.	BMC Genomics	14(1)	351	2013		
39527	23750162	Aung M.S., Masuda H., Kobayashi T., Nakanishi H., Yamakawa T., Nishizawa N.K.	Iron biofortification of myanmar rice.	Front Plant Sci	4	158	2013		
39528	23700411	Hiscox A., Khammanithong P., Kaul S., Sananikhom P., Luthi R., Hill N., Brey P.T., Lindsay S.W.	Risk Factors for Mosquito House Entry in the Lao PDR.	PLoS ONE	8(5)	e62769	2013		
39529	23649167	Alvarez C.E., Saigo M., Margarit E., Andreo C.S., Drincovich M.F.	Kinetics and functional diversity among the five members of the NADP-malic enzyme family from Zea mays, a C4 species.	Photosyn. Res.	115(1)	65-80	2013		
39530	23666184	Raorane M.L., Mutte S.K., Varadarajan A.R., Pabuayon I.M., Kohli A.	Protein SUMOylation and plant abiotic stress signaling: in silico case study of rice RLKs, heat-shock and Ca(2+)-binding proteins.	Plant Cell Rep.	32(7)	1053-65	2013		
39531	23774221	Huang Y.F., Chiueh P.T., Kuan W.H., Lo S.L.	Microwave pyrolysis of rice straw: Products, mechanism, and kinetics.	Bioresour. Technol.	142C	620-624	2013		
39532	23660284	Vincent J., Dai Z., Ravel C., Choulet F., Mouzeyar S., Bouzidi M.F., Agier M., Martre P.	dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts.	Database (Oxford)	2013(0)	bat014	2013		
39533	23718125	Zhou L., Huang T.W., Sun S., Wang J.Y., Chen G., Poplawsky A.R., He Y.W.	The rice bacterial pathogen Xanthomonas oryzae pv. oryzae produces 3-hydroxybenzoic acid and 4-hydroxybenzoic acid via XanB2 for use in xanthomonadin, ubiquinone and exopolysaccharide biosynthesis.	Mol. Plant Microbe Interact.	26(10)	1239-48	2013		
39534	23733064	Tan D., Lv Q., Chen X., Shi J., Ren M., Wu P., Mao C.	Interactions among rice ORC subunits.	Plant Signal Behav	8(8)	e25007	2013		
39535	23656867	Lv Q., Xu J., Wu P.	OsPAPST1, a useful mutant for identifying seed purity and authenticity in hybrid rice.	Plant Signal Behav	8(7)	e24819	2013		
39536	23675379	Masuda H., Kobayashi T., Ishimaru Y., Takahashi M., Aung M.S., Nakanishi H., Mori S., Nishizawa N.K.	Iron-biofortification in rice by the introduction of three barley genes participated in mugineic acid biosynthesis with soybean ferritin gene.	Front Plant Sci	4	132	2013		
39537	23705930	He L., Zhao M., Wang Y., Gai J., He C.	Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max.	BMC Evol. Biol.	13	103	2013		
39538	23668360	Kwon C.T., Yoo S.C., Koo B.H., Cho S.H., Park J.W., Zhang Z., Li J., Li Z., Paek N.C.	Natural variation in Early flowering1 contributes to early flowering in japonica rice under long days.	Plant Cell Environ.	37(1)	101-12	2014		
39539	23702596	Chen W., Gong L., Guo Z., Wang W., Zhang H., Liu X., Yu S., Xiong L., Luo J.	A Novel Integrated Method for Large-scale Detection, Identification and Quantification of Widely-targeted Metabolites: Application in Study of Rice Metabolomics.	Mol Plant	6(6)	1769-80	2013		
39540	23649262	Nakagawa K.	Studies Targeting alpha-Glucosidase Inhibition, Antiangiogenic Effects, and Lipid Modification Regulation: Background, Evaluation, and Challenges in the Development of Food Ingredients for Therapeutic Purposes.	Biosci. Biotechnol. Biochem.	77(5)	900-8	2013		
39541	23680125	Zhang K., Hu D., Zhu H., Yang J., Wu J., He M., Jin L., Yang S., Song B.	Enantioselective hydrolyzation and photolyzation of dufulin in water.	Chem Cent J	7(1)	86	2013		
39542	23675376	Negruk V.	Mitochondrial Genome Sequence of the Legume Vicia faba.	Front Plant Sci	4	128	2013		
39543	23666066	Meyers D., Mukherjee S., Cheng J.G., Middey S., Zhou J.S., Goodenough J.B., Gray B.A., Freeland J.W., Saha-Dasgupta T., Chakhalian J.	Zhang-Rice physics and anomalous copper states in A-site ordered perovskites.	Sci Rep	3	1834	2013		
39544	23733074	Nosaka M., Ishiwata A., Shimizu-Sato S., Ono A., Ishimoto K., Noda Y., Sato Y.	The copy number of rice CACTA DNA transposons carrying miR820 does not correlate with miR820 expression.	Plant Signal Behav	8(8)	e25169	2013		
39545	23644036	Chen Z., He Y., Shi B., Yang D.	human serum albumin from recombinant DNA technology: Challenges and strategies.	Biochim. Biophys. Acta	1830(12)	5515-25	2013		
39546	23720666	Newman M.A., Sundelin T., Nielsen J.T., Erbs G.	MAMP (microbe-associated molecular pattern) triggered immunity in plants.	Front Plant Sci	4	139	2013		
39547	23735799	Suriyachai N., Weerasaia K., Laosiripojana N., Champreda V., Unrean P.	Optimized simultaneous saccharification and co-fermentation of rice straw for ethanol production by Saccharomyces cerevisiae and Scheffersomyces stipitis co-culture using design of experiments.	Bioresour. Technol.	142C	171-178	2013		
39548	23653313	Su'udi M., Kim J., Park J.M., Bae S.C., Kim D., Kim Y.H., Ahn I.P.	Quantification of Rice blast disease Progressions Through Taqman Real-Time PCR.	Mol. Biotechnol.	55(1)	43-8	2013		
39549	23648859	Song Y.R., Jeong D.Y., Cha Y.S., Baik S.H.	Exopolysaccharide produced by Pediococcus acidilactici M76 isolated from the Korean traditional rice wine, makgeolli.	J. Microbiol. Biotechnol.	23(5)	681-8	2013		
39550	23734193	Zhang F., Du Z., Huang L., Cruz C.V., Zhou Y., Li Z.	Comparative Transcriptome Profiling Reveals Different Expression Patterns in Xanthomonas oryzae pv. oryzae Strains with Putative Virulence-Relevant Genes.	PLoS ONE	8(5)	e64267	2013		
39551	0	Beutler A.N., Munareto J.D., Ramao C.J., Galon L., Dias N.P., Pozzebon B.C., Rodrigues L.A.T., Munareto G.S., Giacomeli R., Ramos P.V.	Soil physical properties and rice straw levels in management systems: Effect on irrigated rice yield [Propriedades fisicas do solo e produtividade de arroz irrigado em diferentes sistemas de manejo]	Rev. Bras. Cienc. Solo	36	1601-1607	2012		
39552	0	Theeba M., Bachmann R.T., Illani Z.I., Zulkefli M., Husni M.H.A., Samsuri A.W.	Characterization of local mill rice husk charcoal and its effect on compost properties	Malaysian Journal of Soil Science	16	89-102	2012		
39553	0	Hamayun M., Khan S.A., Khan A.L., Afzal M., Lee I.J.	Endophytic Cephalotheca sulfurea AGH07 reprograms soybean to higher growth	J Plant Interact	7	301-306	2012		
39554	22276194	Hauberg-Lotte L., Klingenberg H., Scharf C., Bohm M., Plessl J., Friedrich F., Volker U., Becker A., Reinhold-Hurek B.	Environmental factors affecting the expression of pilAB as well as the proteome and transcriptome of the grass endophyte Azoarcus sp. strain BH72	PLoS ONE	7	e30421	2012		
39555	0	dos Santos G.R., Cunha A.C.F., Ignacio M., Neto M.D.D.C., dos Reis M.R., Aguiar R.W.D.S.	Diversity of Magnaporthe grisea in upland rice of Southern Tocantins State, Brazil [Diversidade de Magnaporthe grisea em arroz de terras altas no sul do Estado do Tocantins, na safra 2008/09]	Revista Ceres	59	65-70	2012		
39556	0	Marini P., Moraes C.L., Marini N., de Moraes D.M., Amarante L.	Physiological and biochemistry changes in seeds of rice subjected to heat stress [Alteracoes fisiologicas e bioquimicas em sementes de arroz submetidas ao estresse termico]	Revista Ciencia Agronomica	43	722-730	2012		
39557	0	Tran T.M., Bui H.H., Luxhoi J., Jensen L.S.	Application rate and composting method affect the immediate and residual manure fertilizer value in a maize-rice-rice-maize cropping sequence on a degraded soil in northern Vietnam	Soil Sci. Plant Nutr.	58	206-223	2012		
39558	22295065	Segovia J., Sabbah A., Mgbemena V., Tsai S.Y., Chang T.H., Berton M.T., Morris I.R., Allen I.C., Ting J.P.Y., Bose S.	TLR2/MyD88/NF-??B pathway, reactive oxygen species, potassium efflux activates NLRP3/ASC inflammasome during respiratory syncytial virus infection	PLoS ONE	7	e29695	2012		
39559	0	Felix Alvarez R.C., Costa Crusciol C.A., Stephan Nascente A.	Growth analysis and yield of traditional, intermediate and modern upland rice cultivars [Analise de crescimento e produtividade de cultivares de arroz de terras altas dos tipos tradicional, intermediario e moderno]	Pesquisa Agropecuaria Tropical	42	397-406	2012		
39560	0	Lobo-Hernandez M.I., Saldamando-Benjumea C.I.	Molecular characterization and genetic differentiation of spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) in Maize, rice, and cotton fields of Colombia with AFLP [Caracterizacion molecular y diferenciacion genetica de spodoptera frugiperda J. E. Smith (Lepidoptera: Noctuidae) en Cultivos de Maiz, Arroz, y algodonero de Colombia con el uso de AFLP]	Southwestern Entomologist	37	193-207	2012		
39561	0	da Silveira Pinheiro L., Rangel P.H.N., Vianello R.P., Brondani C.	Genetic variability of rice recurrent selection populations as affected by male sterility or manual recombination	Pesqui. Agropecu. Bras.	47	808-814	2012		
39562	0	Jung K.H., An G.	Application of MapMan and RiceNet drives systematic analyses of the early heat stress transcriptome in rice seedlings	Journal of Plant Biology	55	436-449	2012		
39563	22808269	Shaikh F.Y., Utley T.J., Craven R.E., Rogers M.C., Lapierre L.A., Goldenring J.R., Crowe Jr.	Respiratory syncytial virus assembles into structured filamentous virion particles independently of host cytoskeleton and related proteins	PLoS ONE	7	e40826	2012		
39564	0	Chakhonkaen S., Pitnjam K., Saisuk W., Ukoskit K., Muangprom A.	Genetic structure of Thai rice and rice accessions obtained from the international rice research institute	Rice (N Y)	5	19	2012		
39565	22412984	Sacco R.E., Nonnecke B.J., Palmer M.V., Waters W.R., Lippolis J.D., Reinhardt T.A.	Differential expression of cytokines in response to respiratory syncytial virus infection of calves with high or low circulating 25-hydroxyvitamin D 3	PLoS ONE	7	e33074	2012		
39566	0	Kasem S., Waters D.L.E., Henry R.J.	Analysis of Starch Gene Diversity in the Wild Relatives of Oryza sativa	Trop Plant Biol	5	286-308	2012		
39567	0	Stone L.F., Heinemann A.B.	Simulation of nitrogen management in upland rice with ORYZA/APSIM 2000 model [Simulacao do manejo do nitrogenio em arroz de terras altas com o modelo ORYZA/APSIM 2000]	Revista Brasileira de Engenharia Agricola e Ambiental	16	611-617	2012		
39568	0	Ibrahim I.K.A., Awd-Allah S.F.A., Handoo Z.A.	Host suitability of some poaceous crop cultivars for heterodera goldeni	Nematropica	42	324-329	2012		
39569	22479589	Marchal J., Blanc S., Epelbaum J., Aujard F., Pifferi F.	Effects of chronic calorie restriction or dietary resveratrol supplementation on insulin sensitivity markers in a primate, microcebus murinus	PLoS ONE	7	e34289	2012		
39570	22272270	Othumpangat S., Walton C., Piedimonte G.	MicroRNA-221 modulates RSV replication in human bronchial epithelium by targeting NGF expression	PLoS ONE	7	e30030	2012		
39571	0	Jung K.H., Ko H.J., Nguyen M.X., Kim S.R., Ronald P., An G.	Genome-wide identification and analysis of early heat stress responsive genes in rice	Journal of Plant Biology	55	458-468	2012		
39572	23056391	Aeffner F., Davis I.C.	Respiratory Syncytial Virus Reverses Airway Hyperresponsiveness to Methacholine in Ovalbumin-Sensitized Mice	PLoS ONE	7	e46660	2012		
39573	22403603	Rice W.L., Zhang Y., Chen Y., Matsuzaki T., Brown D., Lu H.A.J.	Differential, phosphorylation dependent trafficking of AQP2 in LLC-PK1 cells	PLoS ONE	7	e32843	2012		
39574	22383950	Boyapalle S., Wong T., Garay J., Teng M., San Juan-Vergara H., Mohapatra S., Mohapatra S.	Respiratory syncytial virus NS1 protein colocalizes with mitochondrial antiviral signaling protein MAVS following infection	PLoS ONE	7	e29386	2012		
39575	22470426	Eshaghi A., Duvvuri V.R., Lai R., Nadarajah J.T., Li A., Patel S.N., Low D.E., Gubbay J.B.	Genetic variability of human respiratory syncytial virus a strains circulating in Ontario: A novel genotype with a 72 nucleotide G gene duplication	PLoS ONE	7	e32807	2012		
39576	0	Sovu, Tigabu M., Savadogo P., Oden P.C.	Facilitation of forest landscape restoration on abandoned swidden fallows in laos using mixed-species planting and biochar application	Silva Fennica	46	39-51	2012		
39577	0	Jen F.Y., Tsay T.T., Chen P.	Aphelenchoides bicaudatus from ornamental nurseries in Taiwan and its relationship with some agricultural crops	Plant Dis.	96	1763-1766	2012		
39578	22384158	Demidova-Rice T.N., Wolf L., Deckenback J., Hamblin M.R., Herman I.M.	Human platelet-rich plasma- and extracellular matrix-derived peptides promote impaired cutaneous wound healing in vivo	PLoS ONE	7	e32146	2012		
39579	0	Silva M.L.D.S., Levy C.D.C.B., Vitti G.C.	Availability of heavy metals in contaminated soil evidenced by chemical extractants	Revista Ceres	59	406-413	2012		
39580	22927950	Kim K.S., Lee Y.H.	Gene expression profiling during conidiation in the rice blast pathogen Magnaporthe oryzae	PLoS ONE	7	e43202	2012		
39581	0	Sizemore G.C., Main M.B.	Quality of flooded rice and fallow fields as foraging habitat for Little Blue Herons and Great Egrets in the everglades agricultural area, USA	Waterbirds	35	381-393	2012		
39582	0	Nomura E.S., Damatto Junior E.R., Fuzitani E.J., Saes L.A., Jensen E.	Acclimatization of micropropagated 'Grand Naine' banana seedling with application of biofertilizers in two seasons [Aclimatizacao de mudas micropropagadas de bananeira 'grand naine' com aplicacao de biofertilizantes em duas estacoes do ano]	Revista Ceres	59	518-529	2012		
39583	22590614	Kamphuis T., Meijerhof T., Stegmann T., Lederhofer J., Wilschut J., de Haan A.	Immunogenicity and protective capacity of a virosomal respiratory syncytial virus vaccine adjuvanted with monophosphoryl lipid a in mice	PLoS ONE	7	e36812	2012		
39584	0	Hoat T.X., Bon N.G., van Quan M., Hien V.D., Thanh N.D., Dickinson M.	Detection and molecular characterization of sugarcane grassy shoot phytoplasma in Vietnam	Phytoparasitica	40	351-359	2012		
39585	0	Khan A.L., Shinwari Z.K., Kim Y.H., Waqas M., Hamayun M., Kamran M., Lee I.J.	Role of endophyte chaetomium globosum lk4 in growth of capsicum annuum by producion of gibberellins and indole acetic acid	Pak J Bot	44	1601-1607	2012		
39586	0	Abdelkader A.F., El-khawas S., El-sherif N.A.S.E., Hassanein R.A., Emam M.A., Hassan R.E.	Expression of aquaporin gene (Os PIP1-3) in salt-stressed rice (Oryzasativa l.) plants pre-treated with the neurotransmitter (dopamine)	Plant OMICS	5	532-541	2012		
39587	0	Paltridge N.G., Palmer L.J., Milham P.J., Guild G.E., Stangoulis J.C.R.	Energy-dispersive X-ray fluorescence analysis of zinc and iron concentration in rice and pearl millet grain	Plant Soil	361	251-260	2012		
39588	0	Rios-Diez J.D., Siegfried B., Saldamando-Benjumea C.I.	Susceptibility of spodoptera frugiperda (Lepidoptera: Noctuidae) strains from central Colombia to Cry1Ab and Cry1Ac entotoxins of bacillus thuringiensis	Southwestern Entomologist	37	281-293	2012		
39589	0	Choi M.S., Heu S., Paek N.C., Koh H.J., Lee J.S., Oh C.S.	Expression of hpa1 gene encoding a bacterial harpin protein in Xanthomonas oryzae pv. oryzae enhances disease resistance to both fungal and bacterial pathogens in rice and Arabidopsis	Plant Pathology Journal	28	364-372	2012		
39590	22662266	Bian T., Gibbs J.D., Orvell C., Imani F.	Respiratory syncytial virus matrix protein induces lung epithelial cell cycle arrest through a p53 dependent pathway	PLoS ONE	7	e38052	2012		
39591	22655066	Remot A., Roux X., Dubuquoy C., Fix J., Bouet S., Moudjou M., Eleouet J.F., Riffault S., Petit-Camurdan A.	Nucleoprotein nanostructures combined with adjuvants adapted to the neonatal immune context: A candidate mucosal RSV vaccine	PLoS ONE	7	e37722	2012		
39592	0	de Freitas D.A.F., Silva M.L.N., Cardoso E.L., Curi N.	Soil quality indexes under different forestry and adjacent native scrubland use and management systems [Indices de qualidade do solo sob diferentes sistemas de uso e manejo florestal e cerrado nativo adjacente]	Revista Ciencia Agronomica	43	417-428	2012		
39593	0	Chutipaijit S., Cha-um S., Sompornpailin K.	An evaluation of water deficit tolerance screening in pigmented indica rice genotypes	Pak J Bot	44	65-72	2012		
39594	0	Che Radziah C.M.Z., Siti Nurkhalida A.K., Zamri Z., Ismanizan I.	Effect of illumination, casein hydrolysate and proline on callus induction of Oryza sativa L. CV. MR219	Malaysian Applied Biology	41	37-41	2012		
39595	22393401	Loebbermann J., Schnoeller C., Thornton H., Durant L., Sweeney N.P., Schuijs M., O'Garra A., Johansson C., Openshaw P.J.	IL-10 regulates viral lung immunopathology during acute respiratory syncytial virus infection in mice	PLoS ONE	7	e32371	2012		
39596	22574108	Faber T.E., Schuurhof A., Vonk A., Koppelman G.H., Hennus M.P., Kimpen J.L.L., Janssen R., Bont L.J.	IL1RL1 gene variants and nasopharyngeal IL1RL-a levels are associated with severe RSV bronchiolitis: A multicenter cohort study	PLoS ONE	7	e34364	2012		
39597	0	Yooyongwech S., Cha-Um S., Supaibulwatana K.	Proline related genes expression and physiological changes in indica rice response to water-deficit stress	Plant OMICS	5	597-603	2012		
39598	0	Klys M.	An influence of herbs on the sex structure in populations of insect pests of stored products	Journal of Plant Protection Research	52	463-466	2012		
39599	0	Baloch M.J., Dunwell J., Khan N.U., Khakwani A.A., Dennet M., Jatoi W.A.	Profiling dehydrin gene sequence and physiological parameters in drought tolerant and susceptible spring wheat cultivars	Pak J Bot	44	801-806	2012		
39600	0	Wang Y., Wu J., Lee D.Y., Kim Y.J., Kim Y.C., Choi S., GiKim -B., Park S., Kim S.G., Kang K.Y., Kim S.T.	Comparative secretome analysis of differentially-induced proteins in rice lesion mimic mutant spotted leaf 11 (spl11)	Plant OMICS	5	567-575	2012		
39601	0	Abdur Rashid M., Kamrul Hasan M.	Domestic and international competitiveness of production of selected agricultural commodities in Bangladesh	Thai J. Agric. Sci.	45	45-57	2012		
39602	22511982	Tian J.C., Chen Y., Li Z.L., Li K., Chen M., Peng Y.F., Hu C., Shelton A.M., Ye G.Y.	Transgenic Cry1Ab rice does not impact ecological fitness and predation of a generalist spider.	PLoS ONE	7	e35164	2012		
39603	22792355	Empey K.M., Orend J.G., Peebles R.S., Egana L., Norris K.A., Oury T.D., Kolls J.K.	Stimulation of immature lung macrophages with intranasal interferon gamma in a novel neonatal mouse model of respiratory syncytial virus infection	PLoS ONE	7	e40499	2012		
39604	0	Engel K., Asch F., Becker M.	Classification of rice genotypes based on their mechanisms of adaptation to iron toxicity	Journal of Plant Nutrition and Soil Science	175	871-881	2012		
39605	22511929	Sharma M.K., Sharma R., Cao P., Jenkins J., Bartley L.E., Qualls M., Grimwood J., Schmutz J., Rokhsar D., Ronald P.C.	A genome-wide survey of switchgrass genome structure and organization.	PLoS ONE	7	e33892	2012		
39606	0	Da Silva R.R., Rodrigues L.U., De Freitas G.A., De Melo A.V., Do Nascimento I.R., D'Andrea A.F.	Influence of carbonized rice husk in different substrates on quality of tomato seedlings [Influencia de casca de arroz carbonizada em diferentes substratos na qualidade de mudas de tomateiro]	Revista Brasileirade Ciencias Agrarias	7	803-809	2012		
39607	0	Matin M.N., Kang S.G.	Genetic and Phenotypic Analysis of LAX1-6, a Mutant Allele of LAX PANICLE1 in Rice	Journal of Plant Biology	55	50-63	2012		
39608	22905186	Robles P., Micol J.L., Quesada V.	Arabidopsis mda1, a nuclear-encoded protein, functions in chloroplast development and abiotic stress responses	PLoS ONE	7	e42924	2012		
39609	0	Ngwe K., Kheoruenromne I., Suddhiprakarn A.	Otassium status and physicochemical and mineralogical properties of lowland vertisols in a rice-based cropping system under tropical savanna climate	Kasetsart Journal - Natural Science	46	522-537	2012		
39610	24191617	Rahman M.F., Jalal K.C.A., Jahan N., Kamaruzzaman B.Y., Ara R., Arshad A.	Present status and approaches for the sustainable development of community based fish culture in seasonal floodplains of Bangladesh	Pakistan Journal of Biological Sciences	15	551-567	2012		
39611	0	Kim S.Y., Gutierrez J., Kim P.J.	Considering winter cover crop selection as green manure to control methane emission during rice cultivation in paddy soil	Agriculture, Ecosystems and Environment	161	130-136	2012		
39612	0	Lebesi D.M., Tzia C.	Use of endoxylanase treated cereal brans for development of dietary fiber enriched cakes	Innovative Food Science and Emerging Technologies	13	207-214	2012		
39613	0	Khaliq A., Matloob A., Mahmood S., Abbas R.N., Bismillah Khan M.	Seeding density and herbicide tank mixtures furnish better weed control and improve growth, yield and quality of direct seeded fine rice	Int J Agric Biol	14	499-508	2012		
39614	0	Sanchez C., Carvalho V.L., Kathriner A., O'Shea M., Kaiser H.	First report on the herpetofauna of the Oecusse District, an exclave of Timor-Leste	Herpetol Notes	5	137-149	2012		
39615	22970579	Allred L.K., Park E.S., Popping B., Williams K., Marrow T.	EZ GlutenR for the qualitative detection of gluten in foods, beverages, and environmental surfaces	J AOAC Int	95	1106-1117	2012		
39616	0	Oujifard A., Seyfabadi J., Abedian Kenari A., Rezaei M.	Growth and apparent digestibility of nutrients, fatty acids and amino acids in Pacific white shrimp, Litopenaeus vannamei, fed diets with rice protein concentrate as total and partial replacement of fish meal	Aquaculture	342-343	56-61	2012		
39617	0	Egbon I.N., Ayertey J.N., Eziah V.Y.	Relative susceptibility of 13 cowpea (Vigna unguiculata) varieties and some cereal grains to attack by sitophilus oryzae (Coleoptera: Curculionidae)	African Entomology	20	343-349	2012		
39618	0	Dey R.C., Hassan L., Al Munsur M.A.Z., Islam M.M., Begum S.N., Halder J.	Analysis of genetic variability in regenerated and germinated plantlets of ten indica rice genotypes (Oryza sativa L.) using RAPD markers	Agrochimica	56(1)	55-64	2012		
39619	0	Soe K.T., de Costa D.M.	Development of a spore-based formulation of microbial pesticides for control of rice sheath blight	Biocontrol Sci Technol	22	633-657	2012		
39620	0	Erbert C., Lopes A.A., Yokoya N.S., Furtado N.A.J.C., Conti R., Pupo M.T., Lopes J.L.C., Debonsi H.M.	Antibacterial compound from the endophytic fungus Phomopsis longicolla isolated from the tropical red seaweed Bostrychia radicans	Botanica Marina	55	435-440	2012		
39621	0	Rey M.S.R., Beneman D.P., Pinto L.S., da Silva F.S.P., Braga E.J.B., Moura A.B., Pierobom C.R., Peters J.A.	Induction of resistance in rice against Bipolaris oryzae Breda de Hann by constitutive expression of achitinase gene [Inducao de resistencia em arroz contra Bipolaris oryzae breda de Hann, atraves da expressao constitutiva de um gene de quitinase]	Bioscience Journal	28	745-752	2012		
39622	0	Gaydon D.S., Probert M.E., Buresh R.J., Meinke H., Suriadi A., Dobermann A., Bouman B., Timsina J.	Rice in cropping systems-Modelling transitions between flooded and non-flooded soil environments	European Journal of Agronomy	39	9-24	2012		
39623	0	Arshadullah M., Ali A., Hyder S.I., Khan A.M.	Effect of wheat residue incorporation along with n starter dose on rice yield and soil health under saline sodic soil	Journal of Animal and Plant Sciences	22	753-757	2012		
39624	0	Martins R.G., De Camargo E Castro P.R., Araujo D.K., Silva J.M., Martins M.B.G.	Gibberellin sources and doses on development of dwarf rice in biotests [Fontes e doses de giberelina no desempenho de arroz anao em biotestes]	Comunicata Scientiae	3	306-309	2012		
39625	0	Mahmood N., Ahmad B., Hassan S., Bakhsh K.	Impact of temperature ADN precipitation on rice productivity in rice-wheat cropping system of Punjab province	Journal of Animal and Plant Sciences	22	993-997	2012		
39626	0	Madian H.R., El-Gendy N.Sh., Farahat L.A., Abo-State M.A., Ragab A.M.E.	Fungal hydrolysis and saccharification of rice straw and ethanol production	Biosciences Biotechnology Research Asia	9	467-476	2012		
39627	0	Kant P., Gulati A., Harris L., Gleddie S., Singh J., Pauls K.P.	Transgenic corn plants with modified ribosomal protein l3 show decreased ear rot disease after inoculation with Fusarium graminearum	Aust J Crop Sci	6	1598-1605	2012		
39628	0	Cardiet G., Fuzeau B., Barreau C., Fleurat-Lessard F.	Contact and fumigant toxicity of some essential oil constituents against a grain insect pest Sitophilus oryzae and two fungi, Aspergillus westerdijkiae and Fusarium graminearum	J Pest Sci (2004)	85	351-358	2012		
39629	22943499	Kavallieratos N.G., Athanassiou C.G., Arthur F.H., Throne J.E.	Lesser grain borers, Rhyzopertha dominica, select rough rice kernels with cracked hulls for reproduction	Journal of Insect Science	12	38	2012		
39630	0	Borutova R., Aragon Y.A., Nahrer K., Berthiller F.	Co-occurrence and statistical correlations between mycotoxins in feedstuffs collected in the Asia-Oceania in 2010	Anim. Feed Sci. Technol.	178	190-197	2012		
39631	0	Ebling P.D., Zanella I., Karkow A.K., Alves D.A., Santos J.P.A., Pigozzo J.C.	Methods of incorporation of the enzyme phytase in diets for laying hens [Metodos de incorporacao da enzima fitase em racoes para poedeiras]	Ciencia Rural	42	160-165	2012		
39632	0	Rejesus R.M., Mutuc M.E.M., Yasar M., Lapitan A.V., Palis F.G., Chi T.T.N.	Sending Vietnamese Rice Farmers Back to School: Further Evidence on the Impacts of Farmer Field Schools	Canadian Journal of Agricultural Economics	60	407-426	2012		
39633	0	Binang W.B., Ntia J.D., Shiyam O.J.	Genotype and seeding date effects on performance of mangrove rice (Oryza sativa L.) in the Cross River Estuary	Journal of Agronomy	11	79-84	2012		
39634	0	Karami A., Homaee M., Afzalinia S., Ruhipour H., Basirat S.	Organic resource management: Impacts on soil aggregate stability and other soil physico-chemical properties	Agriculture, Ecosystems and Environment	148	22-28	2012		
39635	0	Sacmaci S., Kartal S., Sacmaci M.	Selective back-extraction and preconcentration of zinc(II) from metal-1,3,5-triketone extracts prior to its determination by flame atomic absorption spectrometry	Int J Environ Anal Chem	92	1626-1637	2012		
39636	0	Silvarajan L., Nulit R., Zaman F.Q.	Effects of plant growth regulators on in vitro regeneration of malaysian Indica rice (Oryza sativa L.) Cv. MR219 by shoot apical meristem	Asian Journal of Agricultural Research	6	180-187	2012		
39637	0	Salaudeen M.T.	Resistance in rice to Rice yellow mottle virus and evidence of non-seed transmission	Archives of Phytopathology and Plant Protection	45	2406-2413	2012		
39638	0	Samaranayake P., Peiris B.D., Dssanayake S.	Effect of excessive ferrous (Fe 2+) on growth and iron content in rice (Oryza sativa)	Int J Agric Biol	14	296-298	2012		
39639	0	Nor Munirah M.Y., Siti Shafurah A., Norazmir M.N., Hayati Adilin M.A.M., Ajau D.	Roles of whole grains-based products in maintaining treatment targets among Type 2 diabetes mellitus patients	Asian Journal of Clinical Nutrition	4	67-76	2012		
39640	0	Tubana B.S., Harrell D.L., Walker T., Teboh J., Lofton J., Kanke Y.	In-season canopy reflectance-based estimation of rice yield response to nitrogen	Agron J	104	1604-1611	2012		
39641	0	Noltze M., Schwarze S., Qaim M.	Understanding the adoption of system technologies in smallholder agriculture: The system of rice intensification (SRI) in Timor Leste	Agric Syst	108	64-73	2012		
39642	0	Hussain M., Jang K.H., Farooq M., Lee D.J.	Morphological and physiological evaluation of Korean Rice genotypes for salt resistance	Int J Agric Biol	14	970-974	2012		
39643	0	Gonzalez N., Godoy-Lutz G., Steadman J.R., Higgins R., Eskridge K.M.	Assessing genetic diversity in the web blight pathogen Thanatephorus cucumeris (anamorph = Rhizoctonia solani) subgroups AG-1-IE and AG-1-IF with molecular markers	Journal of General Plant Pathology	78	85-98	2012		
39644	0	Cook F.R., Fahy B., Trafford K.	A rice mutant lacking a large subunit of ADP-glucose pyrophosphorylase has drastically reduced starch content in the culm but normal plant morphology and yield	Functional Plant Biology	39	1068-1078	2012		
39645	0	Yi G.H., Lee H.S., Sohn J.K., Kim K.M.	Physico-chemical properties of Arabidopsis Ca2+/H+ antiporter transgenic rice grain	Bioscience Research	9	8-16	2012		
39646	0	Bayer T., Arrue A., da Costa I.F.D., Lenz G., Coradini C., Sari B.G., Pes M.P.	Aerial fungicide application on irrigated lowland rice with varying spraying nozzles [Aplicacao aerea de fungicidas na cultura do arroz irrigado com diferentes bicos de pulverizacao]	Ciencia Rural	42	2185-2191	2012		
39647	0	Heinemann A.B., Van Oort P.A.J., Fernandes D.S., Maia A.H.N.	Sensitivity of APSIM/ORYZA model due to estimation errors in solar radiation [Analise de sensibilidade do modelo APSIM/ORYZA na estimava de erros na radiacao solar]	Bragantia	71	572-582	2012		
39648	0	Ahmad H.R., Aziz T., Hussain S., Akraam M., Sabir M., Kashif S.U.R., Hanafi M.M.	Zinc-enriched farm yard manure improves grain yield and grain zinc concentration in rice grown on a saline-sodic soil	Int J Agric Biol	14	787-792	2012		
39649	0	Khan J.A., Arshad H.M.I., Saleem K., Sandhu A.F., Hasnain S., Babar M.M.	Evaluation of resistance genes in rice against local isolates of Xanthomonas oryzae pv. oryzae in Punjab Province of Pakistan	Archives of Phytopathology and Plant Protection	45	1826-1839	2012		
39650	0	Sichonany O.R.A.O., Schlosser J.F., Medina R.D., Roggia I.B., Lobo J.S., dos Santos F.B.	Telemetry in transmission of performance data of agricultural machines using GSM/GPRS and Zigbee [Telemetria na transmissao de dados de desempenho de maquinas agricolas utilizando tecnologias GSM/GPRS e Zigbee]	Ciencia Rural	42	1430-1433	2012		
39651	0	Kiani G., Nematzadeh G.A., Ghareyazie B., Sattari M.	Pyramiding of cry1Ab and fgr genes in two Iranian rice cultivars Neda and Nemat	Journal of Agricultural Science and Technology	14	1087-1092	2012		
39652	0	Fidelis R.R., Rotili E.A., dos Santos M.M., Barros H.B., Rodrigues A.M.	Efficiency on use and application response of nitrogen in cultivars of rice in high land in the south of Tocantins State, harvest 2007/2008 [Eficiencia quanto ao uso e resposta a aplicacao de nitrogenio de cultivares de arroz em solos de terras altas no sul do Estado de Tocantins, safra 2007/2008]	Bioscience Journal	28	432-438	2012		
39653	0	Rebolledo M.C., Dingkuhn M., Pere P., Mcnally K.L., Luquet D.	Developmental Dynamics and Early Growth Vigour in Rice. I. Relationship Between Development Rate (1/Phyllochron) and Growth	Journal of Agronomy and Crop Science	198	374-384	2012		
39654	0	Gaydon D.S., Probert M.E., Buresh R.J., Meinke H., Timsina J.	Modelling the role of algae in rice crop nutrition and soil organic carbon maintenance	European Journal of Agronomy	39	35-43	2012		
39655	0	Shaheen S.M., Shams M.S., Elbehiry F.A., Ibrahim S.M.	Influence of stabilized biosolids application on availability of phosphorus, copper, and zinc	Applied and Environmental Soil Science	2012	-	2012		
39656	0	Andreau R., Gelati P., Provaza M., Bennardi D., Fernandez D., Vazquez M.	Physical and chemical degradation of two horticultural soils of La Plata. Alternative treatment [Degradacion fisica y quimica de dos suelos del cordon horticola platense. alternativas de tratamiento]	Ciencia del Suelo	30	107-117	2012		
39657	0	Kahlon U.Z., Murtaza G., Ghafoor A.	Amelioration of saline-sodic soil with amendments using brackish water, canal water and their combination	Int J Agric Biol	14	38-46	2012		
39658	0	Tabkhkar N., Rabiei B., Sabouri A.	Genetic diversity of rice cultivars by microsatellite markers tightly linked to cooking and eating quality	Aust J Crop Sci	6	980-985	2012		
39659	0	Bashir U., Javaid A., Bajwa R.	Allelopathic effects of sunflower residue on growth of rice and subsequent wheat crop [Efectos alelopaticos de residuos de girasol sobre El crecimiento de arroz y cultivo de trigo subsecuente. El girasol (Helianthus annuus L.)]	Chilean Journal of Agricultural Research	72	326-331	2012		
39660	0	Theerakulpisut P., Gunnula W.	Exogenous sorbitol and trehalose mitigated salt stress damage in salt-sensitive but not salt-tolerant rice seedlings	Asian Journal of Crop Science	4	165-170	2012		
39661	0	Ng L.C., Sariah M., Sariam O., Radziah O., Zainal Abidin M.A.	Bio-efficacy of microbial-fortified rice straw compost on rice blast disease severity, growth and yield of aerobic rice	Australasian Plant Pathology	41	541-549	2012		
39662	0	Ndjiondjop M.N., Seek P.A., Lorieux M., Futakuchi K., Yao K.N., Djedatin G., Sow M.E., Bocco R., Cisse F., Fatondji B.	Effect of Drought on Oryza glaberrima Rice Accessions and Oryza glaberrima Derived-lines	Asian Journal of Agricultural Research	6	144-157	2012		
39663	0	Afzal I., Butt A., Rehman H.U., Basra S.M.A., Afzal A.	Alleviation of salt stress in fine aromatic rice by seed priming	Aust J Crop Sci	6	1401-1407	2012		
39664	0	Keeratiurai P.	Developing model of self-reliant lifestyle with the philosophy of sufficiency economy	European Journal of Scientific Research	84	500-506	2012		
39665	0	Worou O.N., Gaiser T., Saito K., Goldbach H., Ewert F.	Simulation of soil water dynamics and rice crop growth as affected by bunding and fertilizer application in inland valley systems of West Africa	Agriculture, Ecosystems and Environment	162	24-35	2012		
39666	0	Kim D., Han G.D.	High hydrostatic pressure treatment combined with enzymes increases the extractability and bioactivity of fermented rice bran	Innovative Food Science and Emerging Technologies	16	191-197	2012		
39667	23231659	Buchanan M., Burton R.A., Dhugga K.S., Rafalski A.J., Tingey S.V., Shirley N.J., Fincher G.B.	Endo-(1,4)-??-Glucanase gene families in the grasses: Temporal and spatial Co-transcription of orthologous genes1	BMC Plant Biol.	12	235	2012		
39668	0	Jaidee R., Polthanee A., Saenjan P.	Growth and yield of soybean cultivars as affected by ground water levels and phosphorus rates grown under greenhouse and field conditions	Aust J Crop Sci	6	81-92	2012		
39669	0	Youseftabar S., Fallah A., Daneshiyan J.	Effect of split application of nitrogen fertilizer on growth and yield of hybrid rice(GRH1)	Advances in Environmental Biology	6	2485-2489	2012		
39670	0	Chang P.F.L., Huang W.K., Lin Y.H., Chen Y., Chang T.H.	Protective function of the recombinant Oshsp18.0-CII protein, a class II small heat shock protein of rice, in Escherichia coli	Botanical Studies	53	291-299	2012		
39671	0	Chanthakhoun V., Wanapat M.	The in vitro gas production and ruminal fermentation of various feeds using rumen liquor from swamp buffalo and cattle	Asian Journal of Animal and Veterinary Advances	7	54-60	2012		
39672	0	Amirjani M.R.	Effect of NaCl stress on rice physiological properties	Archives of Phytopathology and Plant Protection	45	228-243	2012		
39673	0	Amatulli M.T., Spadaro D., Gullino M.L., Garibaldi A.	Conventional and real-time PCR for the identification of Fusarium fujikuroi and Fusarium proliferatum from diseased rice tissues and seeds	European Journal of Plant Pathology	134	401-408	2012		
39674	0	Sabeti A., Kenarsari M.J., Normohammadi G., Jafari A.A., Sharifabad H.H., Mahalleh J.K.	Effects of drought stress, planting density and geometry on yield and yield components of rice in Khoramabad region	Advances in Environmental Biology	6	2617-2626	2012		
39675	0	Fasahat P., Muhammad K., Abdullah A., Ratnam W.	Proximate nutritional composition and antioxidant properties of Oryza rufipogon, a wild rice collected from Malaysia compared to cultivated rice, MR219	Aust J Crop Sci	6	1502-1507	2012		
39676	0	Felicia J., Gervais N.K., Seri-Kouassi, Kouahou F.B.	Apercu des problemes de stockage et incidences des insectes sur la conservation du riz et du mais en milieux paysan: Cas de la region de bouafle-Cote d,Ivoire	European Journal of Scientific Research	83	349-363	2012		
39677	0	Fasahat P., Abdullah A., Muhammad K., Karupaiah T., Ratnam W.	Red Pericarp Advanced Breeding Lines Derived from Oryza Rufipogon x Oryza Sativa: Physicochemical Properties, Total Antioxidant Activity, Phenolic Compounds and Vitamin E Content	Advance Journal of Food Science and Technology	4	155-165	2012		
39678	0	Win K.M., Korinsak S., Jantaboon J., Siangliw M., Lanceras-Siangliw J., Sirithunya P., Vanavichit A., Pantuwan G., Jongdee B., Sidhiwong N., Toojinda T.	Breeding the Thai jasmine rice variety KDML105 for non-age-related broad-spectrum resistance to bacterial blight disease based on combined marker-assisted and phenotypic selection	Field Crops Res.	137	186-194	2012		
39679	0	Fani S.R., Zamanizadeh H., Moradi M.	Comparison between cultural methods and TLC for detection of atoxigenic strains of Aspergillus flavus isolated from Iranian pistachio	Acta Hortic.	963	33-35	2012		
39680	0	Medina A., Gonzalez-Vera A., Pineda J., Hernandez A.	Cultural characterization and pathogenic test of Ceratobasidium spp isolated from maize banded leaf [Incidencia, caracterizacion cultural y prueba de patogenicidad de ceratobasidium sp. aislado de manchas bandeadas en maiz]	Bioagro	24	197-204	2012		
39681	0	Kavallieratos N.G., Athanassiou C.G., Mpassoukou A.E., Mpakou F.D., Tomanovi? Z., Manessioti T.B., Papadopoulou S.C.	Bioassays with diatomaceous earth formulations: Effect of species co-occurrence, size of vials and application technique	Crop Protection	42	170-179	2012		
39682	0	Belda C., Riudavets J.	Reproduction of the parasitoids Anisopteromalus calandrae (Howard) and Lariophagus distinguendus (Forster) on arenas containing a mixed population of the coleopteran pests Sitophilus oryzae and Rhyzopertha dominica	J Pest Sci (2004)	85	381-385	2012		
39683	0	Gevrek M.N., Atasoy G.D., Yigit A.	Growth and yield response of rice (Oryza sativa) to different seed coating agents	Int J Agric Biol	14	826-830	2012		
39684	0	Nader G.A., Cun G.S., Robinson P.H.	Impacts of silica levels, and location in the detergent fiber matrix, on in vitro gas production of rice straw	Anim. Feed Sci. Technol.	174	140-147	2012		
39685	0	MUTALIB A.A., RADZIAH O., SHUKOR Y., NAHER U.A.	Effect of nitrogen fertilizer on hydrolytic enzyme production, root colonisation, N metabolism, leaf physiology and growth of rice inoculated with Bacillus sp. (Sb42).	Aust J Crop Sci	6	1383-1389	2012		
39686	0	Huyen N.T., Wanapat M., Navanukraw C.	Effect of Mulberry leaf pellet (MUP) supplementation on rumen fermentation and nutrient digestibility in beef cattle fed on rice straw-based diets	Anim. Feed Sci. Technol.	175	8-15	2012		
39687	0	Hatala J.A., Detto M., Sonnentag O., Deverel S.J., Verfaillie J., Baldocchi D.D.	Greenhouse gas (CO 2, CH 4, H 2O) fluxes from drained and flooded agricultural peatlands in the Sacramento-San Joaquin Delta	Agriculture, Ecosystems and Environment	150	1-18	2012		
39688	0	Aminpanah H., Sharifi P., Firouzi S.	Interference interactions of two species of Echinochloa genus with rice [Interacciones de interferencia entre dos especies del genero Echinochloa con arroz]	Chilean Journal of Agricultural Research	72	364-370	2012		
39689	0	Jilani M., Daneshian J., Rabiee M.	Effect of pre-harvest desiccation of paraquat on grain yield and some agronomic characteristics of Faba bean	Advances in Environmental Biology	6	2502-2504	2012		
39690	22695859	Reim A., Luke C., Krause S., Pratscher J., Frenzel P.	One millimetre makes the difference: High-resolution analysis of methane-oxidizing bacteria and their specific activity at the oxic-anoxic interface in a flooded paddy soil	ISME Journal	6	2128-2139	2012		
39691	24004611	Shinkawa R., Morishita A., Amikura K., Machida R., Murakawa H., Kuchitsu K., Ishikawa M.	Abscisic acid induced freezing tolerance in chilling-sensitive suspension cultures and seedlings of rice.	BMC Res Notes	6	351	2013		
39692	24047253	Wang H., Xu D., Pu L., Zhou G.H.	Southern rice black-streaked dwarf virus Alters insect Vectors' Host Orientation Preferences to Enhance Spread and Increase Rice ragged stunt virus Co-infection.	Phytopathology	104(2)	196-201	2014		
39693	24040375	Huang Z., Pan X.D., Wu P.G., Han J.L., Chen Q.	Health risk assessment of heavy metals in rice to the population in zhejiang, china.	PLoS ONE	8(9)	e75007	2013		
39694	23849114	Jung E.S., Lee S., Lim S.H., Ha S.H., Liu K.H., Lee C.H.	Metabolite profiling of the short-term responses of rice leaves (Oryza sativa cv. Ilmi) cultivated under different LED lights and its correlations with antioxidant activities.	Plant Sci.	210	61-9	2013		
39695	24090830	Li Y., Duan Y.P., Huang F., Yang J., Xiang N., Meng X.Z., Chen L.	Polybrominated diphenyl ethers in e-waste: Level and transfer in a typical e-waste recycling site in Shanghai, Eastern China.	Waste Manag	34(6)	1059-65	2014		
39696	24163626	Hossain M.B., Puteh A.B.	Emission of carbon dioxide influenced by different water levels from soil incubated organic residues.	ScientificWorldJournal	2013	638582	2013		
39697	24068225	Martinez M.F., Philippi S.T., Estima C., Leal G.	Validity and reproducibility of a food frequency questionnaire to assess food group intake in adolescents.	Cad Saude Publica	29(9)	1795-804	2013		
39698	24190103	Chen W., Chen H., Zheng T., Yu R., Terzaghi W.B., Li Z., Deng X.W., Xu J., He H.	Highly efficient genotyping of rice biparental populations by GoldenGate assays based on parental resequencing.	Theor. Appl. Genet.	127(2)	297-307	2014		
39699	24243826	Lai X.W., Sun D.L., Ruan C.Q., Zhang H., Liu C.L.	Rapid analysis of aflatoxins B1 , B2 , and ochratoxin A in rice samples using dispersive liquid-liquid microextraction combined with HPLC.	J Sep Sci	37(1-2)	92-8	2014		
39700	24164515	Hammond B., Kough J., Herouet-Guicheney C., Jez J.M.	Toxicological evaluation of proteins introduced into food crops.	Crit. Rev. Toxicol.	43 Suppl 2	25-42	2013		
39701	24278269	Breen J., Wicker T., Shatalina M., Frenkel Z., Bertin I., Philippe R., Spielmeyer W., Simkov? H., Saf?? J., Cattonaro F., Scalabrin S., Magni F., Vautrin S., Berg?s H., Paux E., Fahima T., Dolezel J., Korol A., Feuillet C., Keller B.	A Physical Map of the Short Arm of Wheat Chromosome 1A.	PLoS ONE	8(11)	e80272	2013		
39702	24188923	Qian X., Shen G., Wang Z., Guo C., Liu Y., Lei Z., Zhang Z.	Co-composting of livestock manure with rice straw: Characterization and establishment of maturity evaluation system.	Waste Manag	34(2)	530-5	2014		
39703	24209919	Tousheh M., Miroliaei M., Asghar Rastegari A., Ghaedi K., Esmaeili A., Matkowski A.	Computational evaluation on the binding affinity of non-specific lipid-transfer protein-2 with fatty acids.	Comput. Biol. Med.	43(11)	1732-8	2013		
39704	24240810	Miah G., Rafii M.Y., Ismail M.R., Puteh A.B., Rahim H.A., Islam KhN., Latif M.A.	A review of microsatellite markers and their applications in rice breeding programs to improve blast disease resistance.	Int J Mol Sci	14(11)	22499-528	2013		
39705	24260455	Melkonian S., Argos M., Hall M.N., Chen Y., Parvez F., Pierce B., Cao H., Aschebrook-Kilfoy B., Ahmed A., Islam T., Slavcovich V., Gamble M., Haris P.I., Graziano J.H., Ahsan H.	Urinary and dietary analysis of 18,470 bangladeshis reveal a correlation of rice consumption with arsenic exposure and toxicity.	PLoS ONE	8(11)	e80691	2013		
39706	24244501	Araneda L., Sim S.C., Bae J.J., Chakraborty N., Curley J., Chang T., Inoue M., Warnke S., Jung G.	Comparative Genome Analysis between Agrostis stolonifera and Members of the Pooideae Subfamily, including Brachypodium distachyon.	PLoS ONE	8(11)	e79425	2013		
39707	24244529	Ji R., Yu H., Fu Q., Chen H., Ye W., Li S., Lou Y.	Comparative Transcriptome Analysis of Salivary Glands of Two Populations of Rice Brown Planthopper, Nilaparvata lugens, That Differ in Virulence.	PLoS ONE	8(11)	e79612	2013		
39708	24244838	Ray A., Deb D., Ray R., Chattopadhayay B.	Phenotypic characters of rice landraces reveal independent lineages of short-grain aromatic indica rice.	AoB Plants	5	plt032	2013		
39709	24263095	Dar M.H., de Janvry A., Emerick K., Raitzer D., Sadoulet E.	Flood-tolerant rice reduces yield variability and raises expected yield, differentially benefitting socially disadvantaged groups.	Sci Rep	3	3315	2013		
39710	23927717	Sato T., Furuya J., Tamada Y., Kondo H.	Impacts of palatal coverage on bolus formation during mastication and swallowing and subsequent adaptive changes.	J Oral Rehabil	40(10)	751-7	2013		
39711	23936527	Hotta C.T., Nishiyama M.Y., Souza G.M.	Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop.	PLoS ONE	8(8)	e71847	2013		
39712	23940651	Moln?r I., Simkov? H., Leverington-Waite M., Goram R., Cseh A., Vr?na J., Farkas A., Dole?el J., Moln?r-L?ng M., Griffiths S.	Syntenic Relationships between the U and M Genomes of Aegilops, Wheat and the Model Species Brachypodium and Rice as Revealed by COS Markers.	PLoS ONE	8(8)	e70844	2013		
39713	23688619	Kovi M.R., Sablok G., Bai X., Wendell M., Rognli O.A., Yu H., Xing Y.	Expression patterns of photoperiod and temperature regulated heading date genes in Oryza sativa.	Comput Biol Chem	45	36-41	2013		
39714	23929654	Nayar S., Sharma R., Tyagi A.K., Kapoor S.	Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.	J. Exp. Bot.	64(14)	4239-53	2013		
39715	23918962	Zhang G., Sakai H., Tokida T., Usui Y., Zhu C., Nakamura H., Yoshimoto M., Fukuoka M., Kobayashi K., Hasegawa T.	The effects of free-air CO2 enrichment (FACE) on carbon and nitrogen accumulation in grains of rice (Oryza sativa L.).	J. Exp. Bot.	64(11)	3179-88	2013		
39716	23934674	Zhang S., Wang Z., Ding D., Shu H.	Fuzzy Filtering with Randomly Occurring Parameter Uncertainties, Interval Delays, and Channel Fadings.	IEEE Trans Cybern			2013		
39717	23966593	Kim S.L., Choi M., Jung K.H., An G.	Analysis of the early-flowering mechanisms and generation of T-DNA tagging lines in Kitaake, a model rice cultivar.	J. Exp. Bot.	64(14)	4169-82	2013		
39718	23951332	Bouyioukos C., Moscou M.J., Champouret N., Hern?ndez-Pinz?n I., Ward E.R., Wulff B.B.	Characterisation and Analysis of the Aegilops sharonensis Transcriptome, a Wild Relative of Wheat in the Sitopsis Section.	PLoS ONE	8(8)	e72782	2013		
39719	23953845	Kim J., Lee Y., Lee S.Y., Kim Y.O., Chung Y.S., Park S.B.	Dietary patterns and functional disability in older Korean adults.	Maturitas	76(2)	160-4	2013		
39720	23966349	Cheng K., Ogle S.M., Parton W.J., Pan G.	Simulating Greenhouse Gas Mitigation Potentials for Chinese Croplands using the DAYCENT Ecosystem Model.	Glob Chang Biol	20(3)	948-62	2014		
39721	23904260	Elsanhoty R.M., Al-Turki AI., Ramadan M.F.	Prevalence of Genetically Modified Rice, Maize, and Soy in Saudi Food Products.	Appl. Biochem. Biotechnol.	171(4)	883-99	2013		
39722	23916648	Hu X., Wei B., Zhang B., Li H., Xu X., Jin Z., Tian Y.	Interaction between amylose and 1-butanol during 1-butanol-hydrochloric acid hydrolysis of normal rice starch.	Int. J. Biol. Macromol.	61C	329-332	2013		
39723	24280112	Kumar K., Kumar M., Kim S.R., Ryu H., Cho Y.G.	Insights into genomics of salt stress response in rice.	Rice (N Y)	6	27	2013		
39724	24095838	Song W., Sun H., Li J., Gong X., Huang S., Zhu X., Zhang Y., Xu G.	Auxin distribution is differentially affected by nitrate in roots of two rice cultivars differing in responsiveness to nitrogen.	Ann. Bot.	112(7)	1383-93	2013		
39725	24158434	Aune D., Norat T., Romundstad P., Vatten L.J.	Whole grain and refined grain consumption and the risk of type 2 diabetes: a systematic review and dose-response meta-analysis of cohort studies.	Eur. J. Epidemiol.	28(11)	845-58	2013		
39726	24103460	Guo B.Q., Cai S.Z., Yan C.H.	Reply to comments on neonatal hair-Hg and birth weight in China: Mercury in rice and fish.	Environ. Pollut.	184	655-6	2014		
39727	24165682	Gao L., Cao Y., Xia Z., Jiang G., Liu G., Zhang W., Zhai W.	Do transgenesis and marker-assisted backcross breeding produce substantially equivalent plants? - A comparative study of transgenic and backcross rice carrying bacterial blight resistant gene Xa21.	BMC Genomics	14(1)	738	2013		
39728	24056583	Yao S.L., Xu Y., Zhang Y.Y., Lu Y.H.	Black rice and anthocyanins induce inhibition of cholesterol absorption in vitro.	Food Funct	4(11)	1602-8	2013		
39729	24141028	Fu L., Yu X., An C.	Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea.	Plant Physiol. Biochem.	73C	202-210	2013		
39730	24137159	Miyazaki N., Nakagawa A., Iwasaki K.	Life cycle of phytoreoviruses visualized by electron microscopy and tomography.	Front Microbiol	4	306	2013		
39731	24100624	Kang S.M., Khan A.L., You Y.H., Kim J.G., Kamran M., Lee I.J.	Gibberellin Production by newly isolated strain of Leifsonia soli SE134 and its potential for plant growth promotion.	J. Microbiol. Biotechnol.	24(1)	106-12	2014		
39732	24094587	D?rea JG.	Comments on neonatal hair-Hg and birth weight in China: Mercury in rice and fish.	Environ. Pollut.	184	654	2014		
39733	24101210	Shi J.J., Huang J.F., Zhang F.	Multi-year monitoring of paddy rice planting area in Northeast China using MODIS time series data.	J Zhejiang Univ Sci B	14(10)	934-46	2013		
39734	24021435	Shanmugavelan P., Kim S.Y., Kim J.B., Kim H.W., Cho S.M., Kim S.N., Kim S.Y., Cho Y.S., Kim H.R.	Evaluation of sugar content and composition in commonly consumed Korean vegetables, fruits, cereals, seed plants, and leaves by HPLC-ELSD.	Carbohydr. Res.	380	112-7	2013		
39735	24105436	Xie S., Chen J., Walsh B.	Genetic mapping of sterile genes with epistasis in backcross designs.	Heredity	112(2)	165-71	2014		
39736	24122336	Banerjee M., Raghavan P.S., Ballal A., Rajaram H., Apte S.K.	oxidative stress management in the filamentous, heterocystous, diazotrophic cyanobacterium, Anabaena PCC7120.	Photosyn. Res.	118	59 70	2013		
39737	24054657	Daneshvar Tarigh G., Shemirani F.	Magnetic multi-wall carbon nanotube nanocomposite as an adsorbent for preconcentration and determination of lead (II) and manganese (II) in various matrices.	Talanta	115	744-50	2013		
39738	23754555	Matsumura M., Sanada-Morimura S., Otuka A., Ohtsu R., Sakumoto S., Takeuchi H., Satoh M.	Insecticide susceptibilities in populations of two rice planthoppers, Nilaparvata lugens and Sogatella furcifera, immigrating into Japan in the period 2005-2012.	Pest Manag. Sci.	70(4)	615-22	2014		
39739	23805325	Kumari K., Muthamilarasan M., Misra G., Gupta S., Subramanian A., Parida S.K., Chattopadhyay D., Prasad M.	Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species.	PLoS ONE	8(6)	e67742	2013		
39740	23810819	Sommella A., Deacon C., Norton G., Pigna M., Violante A., Meharg A.A.	Total arsenic, inorganic arsenic, and other elements concentrations in Italian rice grain varies with origin and type.	Environ. Pollut.	181	38-43	2013		
39741	23805204	Choudhary G., Ranjitkumar N., Surapaneni M., Deborah D.A., Vipparla A., Anuradha G., Siddiq E.A., Vemireddy L.R.	Molecular Genetic Diversity of Major Indian Rice Cultivars over Decadal Periods.	PLoS ONE	8(6)	e66197	2013		
39742	23733055	Macovei A., Tuteja N.	Different expression of miRNAs targeting helicases in rice in response to low and high dose rate gamma-ray treatments.	Plant Signal Behav	8(8)	e25128	2013		
39743	23930344	Khosravi-Boroujeni H., Sarrafzadegan N., Mohammadifard N., Sajjadi F., Maghroun M., Asgari S., Rafieian-Kopaei M., Azadbakht L.	White rice consumption and CVD risk factors among Iranian population.	J Health Popul Nutr	31(2)	252-61	2013		
39744	23853519	Nagano K., Sasaki K., Endo T.	Breeding of new rice cultivar 'Tohoku 194' with 'Sasanishiki'-type good eating quality of cooked rice.	Breed. Sci.	63(2)	233-7	2013		
39745	23748009	Wang Y., Li H., Wu X., Xu X., Jin Z., Tian Y.	Acid-thermal dextrin prepared from rice starch: Structure and encapsulation properties.	Int. J. Biol. Macromol.	60	178-80	2013		
39746	23825574	Zhang T., Liu L., Song Z., Ren G., Feng Y., Han X., Yang G.	Biogas production by co-digestion of goat manure with three crop residues.	PLoS ONE	8(6)	e66845	2013		
39747	23775636	Selim K.A., El-Beih AA., Abdel-Rahman TM., El-Diwany AI.	Biological Evaluation of Endophytic Fungus, Chaetomium globosum JN711454, as Potential Candidate for Improving Drug Discovery.	Cell Biochem. Biophys.	68(1)	67-82	2014		
39748	23841065	Zhang Y., Zheng R., Zhao J., Zhang Y., Wong P.K., Ma F.	Biosorption of zinc from aqueous solution using chemically treated rice husk.	Biomed Res Int	2013	365163	2013		
39749	23889819	Ma X., Shao C., Wang H., Jin Y., Meng Y.	Construction of small RNA-mediated gene regulatory networks in the roots of rice (Oryza sativa).	BMC Genomics	14	510	2013		
39751	23874903	Yang X., Yu X.Y., Li Y.F.	De novo Assembly and Characterization of the Barnyardgrass (Echinochloa crus-galli) Transcriptome Using Next-Generation Pyrosequencing.	PLoS ONE	8(7)	e69168	2013		
39752	23932255	Latif M.A., Omar M.Y., Rafii M.Y., Malek M.A., Tan S.G.	Evidence of sibling species between two host-associated populations of brown planthopper, N. lugens (st?l) (Homoptera: Delphacidea) complex based on morphology and host-plant relationship studies.	C. R. Biol.	336(7)	354-63	2013		
39753	23877038	Liu H., Zhang S., Hu X., Chen C.	Phytotoxicity and oxidative stress effect of 1-octyl-3-methylimidazolium chloride ionic liquid on rice seedlings.	Environ. Pollut.	181	242-9	2013		
39754	23911212	Daam M.A., Santos Pereira AC., Silva E., Caetano L., Cerejeira M.J.	Preliminary aquatic risk assessment of imidacloprid after application in an experimental rice plot.	Ecotoxicol. Environ. Saf.	97	78-85	2013		
39755	23872030	Beckett M.K., Elliott M.N., Clemens J.Q., Ewing B., Berry S.H.	Consequences of Interstitial Cystitis/Bladder Pain Symptoms on Women's Work Participation and Income: Results from a National Household Sample.	J. Urol.	191(1)	83-8	2014		
39756	23873639	Shen F., Tian L., Yuan H., Pang Y., Chen S., Zou D., Zhu B., Liu Y., Li X.	Improving the Mixing Performances of Rice Straw Anaerobic Digestion for Higher Biogas Production by Computational Fluid Dynamics (CFD) Simulation.	Appl. Biochem. Biotechnol.	171(3)	626-42	2013		
39757	23852132	Lim M.N., Lee S.E., Yim H.K., Kim J.H., Yoon I.S., Hwang Y.S.	Differential anoxic expression of sugar-regulated genes reveals diverse interactions between sugar and anaerobic signaling systems in rice.	Mol. Cells	36(2)	169-76	2013		
39758	23887081	Boudenot A., Pallu S., Toumi H., Loiseau Peres S., Dolleans E., Lespessailles E.	Tibial subchondral bone mineral density: sources of variability and reproducibility.	Osteoarthr. Cartil.	21(10)	1586-94	2013		
39759	23922843	Shangguan L., Han J., Kayesh E., Sun X., Zhang C., Pervaiz T., Wen X., Fang J.	Evaluation of genome sequencing quality in selected plant species using expressed sequence tags.	PLoS ONE	8(7)	e69890	2013		
39760	23857470	Oono Y., Kawahara Y., Yazawa T., Kanamori H., Kuramata M., Yamagata H., Hosokawa S., Minami H., Ishikawa S., Wu J., Antonio B., Handa H., Itoh T., Matsumoto T.	Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles.	Plant Mol. Biol.	83(6)	523-37	2013		
39761	23849468	Zheng J., Chen K.H., Yan X., Chen S.J., Hu G.C., Peng X.W., Yuan J.G., Mai B.X., Yang Z.Y.	Heavy metals in food, house dust, and water from an e-waste recycling area in South China and the potential risk to human health.	Ecotoxicol. Environ. Saf.	96	205-12	2013		
39762	23898802	Kim S.B., Lee S.J., Lee J.H., Jung Y.R., Thapa L.P., Kim J.S., Um Y., Park C., Kim S.W.	Pretreatment of rice straw with combined process using dilute sulfuric acid and aqueous ammonia.	Biotechnol Biofuels	6(1)	109	2013		
39763	23935868	Yang Z., Huang D., Tang W., Zheng Y., Liang K., Cutler A.J., Wu W.	Mapping of Quantitative Trait Loci Underlying cold tolerance in Rice Seedlings via High-Throughput Sequencing of Pooled Extremes.	PLoS ONE	8(7)	e68433	2013		
39764	23906843	Liu Q., Liu L., Shin H.D., Chen R.R., Li J., Du G., Chen J.	Biosynthesis of homoeriodictyol from eriodictyol by flavone 3'-O-methyltransferase from recombinant Yarrowia lioplytica: Heterologous expression, biochemical characterization, and optimal transformation.	J. Biotechnol.	167(4)	472-8	2013		
39765	23647140	Hu J., Huang W., Huang Q., Qin X., Dan Z., Yao G., Zhu R., Zhu Y.	The mechanism of ORFH79 suppression with the artificial restorer fertility gene Mt-GRP162.	New Phytol.	199(1)	52-8	2013	_,_,RF1,_	atp6-orfH79,orfH79, ORFH79,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,GRP162
39766	23743425	Gu F., Wang W., Jing L., Jin Y.	Sulfite-formaldehyde pretreatment on rice straw for the improvement of enzymatic saccharification.	Bioresour. Technol.	142C	218-224	2013		
39767	23706591	Pucciariello C., Perata P.	Quiescence in rice submergence tolerance: an evolutionary hypothesis.	Trends Plant Sci.	18(7)	377-81	2013		
39768	23698631	Impa S.M., Morete M.J., Ismail A.M., Schulin R., Johnson-Beebout SE.	Zn uptake, translocation, and grain Zn loading in rice (Oryza sativa L.) genotypes selected for Zn deficiency tolerance and high grain Zn.	J. Exp. Bot.	64(10)	2739-51	2013		
39769	23664883	Sadumpati V., Kalambur M., Vudem D.R., Kirti P.B., Khareedu V.R.	Transgenic indica rice lines, expressing Brassica juncea Nonexpressor of pathogenesis-related genes 1 (BjNPR1), exhibit enhanced resistance to major pathogens.	J. Biotechnol.	166(3)	114-121	2013		
39770	23755056	Pourcel L., Moulin M., Fitzpatrick T.B.	Examining strategies to facilitate vitamin B1 biofortification of plants by genetic engineering.	Front Plant Sci	4	160	2013		
39771	23700971	Tiwari M., Sharma D., Dwivedi S., Singh M., Tripathi R.D., Trivedi P.K.	Expression in Arabidopsis and cellular localization reveal involvement of rice NRAMP, OsNRAMP1, in arsenic transport and tolerance.	Plant Cell Environ.	37(1)	140-52	2014	NRAMP1	OsNramp1, OsNRAMP1, OsNramp6
39772	23717314	Shelden M.C., Roessner U.	Advances in functional genomics for investigating salinity stress tolerance mechanisms in cereals.	Front Plant Sci	4	123	2013		
39773	23649897	Singh A.K., Sharma V., Pal A.K., Acharya V., Ahuja P.S.	Genome-Wide Organization and Expression Profiling of the NAC Transcription Factor Family in Potato (Solanum tuberosum L.).	DNA Res.	20(4)	403-23	2013		
39774	23664583	Rezaei M.K., Shobbar Z.S., Shahbazi M., Abedini R., Zare S.	Glutathione S-transferase (GST) family in barley: Identification of members, enzyme activity, and gene expression pattern.	J. Plant Physiol.	170(14)	1277-84	2013		
39775	23638881	Ghomi K., Rabiei B., Sabouri H., Sabouri A.	Mapping QTLs for traits related to salinity tolerance at seedling stage of rice (Oryza sativa L.): an agrigenomics study of an Iranian rice population.	OMICS	17(5)	242-51	2013		
39776	23715238	Liu N., Huo K., McDowell M.T., Zhao J., Cui Y.	Rice husks as a sustainable source of nanostructured silicon for high performance Li-ion battery anodes.	Sci Rep	3	1919	2013		
39777	0	Filho A.C., Araujo M.M., Gasparin E., de Avila A.L.	Sample size for evaluating the height and diameter of seedlings Cabralea canjerana [Dimensionamento amostral para avaliacao de altura e diametro de mudas de Cabralea canjerana]	Ciencia Rural	42	1204-1211	2012		
39778	0	Usman M., Kazmi I., Khaliq T., Ahmad A., Saleem M.F., Shabbir A.	Variability in water use, crop water productivity and profitability of rice and wheat in Rechna Doab, Punjab, Pakistan	Journal of Animal and Plant Sciences	22	998-1003	2012		
39779	0	Camargo E.R., Senseman S.A., Mccauley G.N., Guice J.B.	Rice (Oryza sativa L.) response and weed control from tank-mix applications of saflufenacil and imazethapyr	Crop Protection	31	94-98	2012		
39780	0	Ashfaq M., Khan A.S., Khan S.H.U., Ahmad R.	Association of various morphological traits with yield and genetic divergence in rice (Oryza sativa)	Int J Agric Biol	14	55-62	2012		
39781	0	Lidon F.J.C., Teixeira M., Ramalho J.C.	Decay of the Chloroplast Pool of Ascorbate Switches on the Oxidative Burst in UV-B-Irradiated Rice	Journal of Agronomy and Crop Science	198	130-144	2012		
39782	0	Akhtar S., Shoaib A.	Biosorption, solution to as (V) pollution	Journal of Animal and Plant Sciences	22	659-664	2012		
39783	0	Mahmood-ur-Rahman, Rao A.Q., Batool F., Azam S., Shahid A.A., Husnain T.	Transgene copy number and phenotypic variations in transgenic Basmati rice	Journal of Animal and Plant Sciences	22	1004-1013	2012		
39784	0	Mennan H., Ngouajio M., Sahin M., Isik D., Altop E.K.	Competitiveness of rice (Oryza sativa L.) cultivars against Echinochloa crus-galli (L.) Beauv. in water-seeded production systems	Crop Protection	41	1-9	2012		
39785	0	Saliman H.M., Sherief A.D. A., El-Tanash A.B.	Production of xylanase by Aspergillus niger and Trichoderma viride using some Agriculture Residues	International Journal of Agricultural Research	7	46-57	2012		
39786	0	Sadras V.O., Slafer G.A.	Environmental modulation of yield components in cereals: Heritabilities reveal a hierarchy of phenotypic plasticities	Field Crops Res.	127	215-224	2012		
39787	0	Asfaliza R., Rafii M.Y., Saleh G., Omar O., Puteh A.	Combining ability and heritability of selected rice varieties for grain quality traits	Aust J Crop Sci	6	1718-1723	2012		
39788	0	Abd-Elbary N.A., Eissa M.F.M., Youssef M.M.A.	Pathogenicity of the rice root nematode, Hirschmanniella oryzae to rice plants in relation to nematode reproduction, plant growth, grain yield and biochemical changes	Archives of Phytopathology and Plant Protection	45	2324-2334	2012		
39789	0	Kaosol T., Kiepukdee S., Towatana P.	Influence of nitrogen containing wastes addition on natural aerobic composting of rice straw	American Journal of Agricultural and Biological Science	7	121-128	2012		
39790	0	Chuan-Udom S., Chinsuwan W.	Effects of threshing unit feature on threshing unit losses for thai axial flow rice combine harvesters	AMA, Agricultural Mechanization in Asia, Africa and Latin America	43	66-71	2012		
39791	0	Ebrahemian M., Saeb K., Mahmoud A.	Ecophysiological effects of barnyardgras (Echinochloa crus galii) on rice CV. Shiroudi	Biosciences Biotechnology Research Asia	9	315-319	2012		
39792	0	Sanni K.A., Fawole I., Ogunbayo S.A., Tia D.D., Somado E.A., Futakuchi K., Sie M., Nwilene F.E., Guei R.G.	Multivariate analysis of diversity of landrace rice germplasm	Crop Sci.	52	494-504	2012		
39793	0	Sinniah U.R., Wahyuni S., Syahputra B.S.A., Gantait S.	A potential retardant for lodging resistance in direct seeded rice (Oryza sativa L.)	Canadian Journal of Plant Science	92	13-18	2012		
39794	22970587	Citak D., Tuzen M.	Cloud point extraction of copper, lead, cadmium, and iron using 2,6-diamino-4-phenyl-1,3,5-triazine and nonionic surfactant, and their flame atomic absorption spectrometric determination in water and canned food samples	J AOAC Int	95	1170-1175	2012		
39795	0	Vu H.T.T., Le D.D., Ismail A.M., Le H.H.	Marker-assisted backcrossing (MABC) for improved salinity tolerance in rice (Oryza sativa L.) to cope with climate change in Vietnam	Aust J Crop Sci	6	1649-1654	2012		
39796	0	Hosseini M., Houshmand S., Mohamadi S., Tarang A., Khodambashi M., Rahimsoroush H.	Detection of QTLs with main, epistatic and QTL??environment interaction effects for rice grain appearance quality traits using two populations of backcross inbred lines (BILs)	Field Crops Res.	135	97-106	2012		
39797	0	Morales M.A., Alvarez N., Diaz A., Kuoho C.Y., Rodriguez M.P., Seron T., Hernandez D.	Endothelium protector effect of Monascus purpureus, red yeast rice, standardized extract [Efecto protector endotelial vascular de un extracto estandarizado de Monascus purpureus]	Boletin Latinoamericano y del Caribe de Plantas Medicinales y Aromaticas	11	464-473	2012		
39798	0	Bassani T.P., Breda L.	Analysis of production costs, productivity and profitability on three technologies of cultivation of irrigated rice on the farm Sao Sebastiao, Querencia do Norte, PR	Custos e Agronegocio	8	100-130	2012		
39799	0	Abouzari A., Rouhi S., Eslami A., Kaviani B.	Comparison of the Effect of different soilless growing media on some growth characteristics of benjamin tree (Ficus benjamina)	Int J Agric Biol	14	985-988	2012		
39800	0	Van Delden S.H., Vos J., Stomph T.J., Brouwer G., Struik P.C.	Photoperiodism in Eragrostis tef: Analysis of ontogeny and morphology in response to photoperiod	European Journal of Agronomy	37	105-114	2012		
39801	0	Khaliq A., Matloob A.	Germination and growth response of rice and weeds to herbicides under aerobic conditions	Int J Agric Biol	14	775-780	2012		
39802	0	Soares F.C., Mello R.P., Peiter M.X., Belle R.A., Robaina A.D., Vivan G.A., Parizi A.R.C.	Water consumption by the lily culture grown on alternative substrates in protected conditions [Consumo de agua pela cultura do lirio, cultivado em substratos alternativos em condicoes de ambiente protegido]	Ciencia Rural	42	1001-1006	2012		
39803	0	Ismail B.S., Siddique A.B.	Allelopathic inhibition by Fimbristylis miliacea on the growth of the rice plants	Advances in Environmental Biology	6	2423-2427	2012		
39804	0	Jamali S., Pourjam E., Safai N.	Determining the relationship between population density of white tip nematode and rice yield	Journal of Agricultural Science and Technology	14	195-203	2012		
39805	0	Protasio T.P., Tonoli G.H.D., Guimaraes Jr., Bufalino L., Couto A.M., Trugilho P.F.	Canonical correlations between chemical and energetic characteristics of lignocellulosic wastes [Correlacoes canonicas entre as caracteristicas quimicas e energeticas de residuos lignocelulosicos]	Cerne	18	433-439	2012		
39806	0	Crusciol C.A.C., Toledo M.Z., Arf O., Cavariani C.	Water supplied by sprinkler irrigation system for upland rice seed production [Fornecimento de agua por meio de irrigacao por aspersao para producao de sementes de arroz de terras altas]	Bioscience Journal	28	34-42	2012		
39807	0	Gomes T.R., de Carvalho L.E., Freitas E.R., Nepomuceno R.C., Ellery E.A.C., Moreira R.H.R.	Rice bran in diets for piglets from 43 to 67 days of age [Farelo de arroz integral em racoes para leitoes de 43 a 67 dias de idade]	Ciencia Animal Brasileira	13	189-196	2012		
39808	0	Mandieh Najafabadi M.B., Peyvast G., Hassanpour Asil M., Olfati J.A., Rabiee M.	Mulching effects on the yield and quality of garlic as second crop in rice fields	International Journal of Plant Production	6	279-289	2012		
39809	0	Mishra A.	Intermittent irrigation enhances morphological and physiological efficiency of rice plants	Agriculture	58	121-130	2012		
39810	0	Cao Quoc N., Vromant N., Tran Thanh B., Ollevier F.	Investigation of the predation potential of different fish species on brown planthopper (Nilaparvata lugens (Stal)) in experimental rice-fish aquariums and tanks	Crop Protection	38	95-102	2012		
39811	0	Giuberti G., Gallo A., Cerioli C., Masoero F.	In vitro starch digestion and predicted glycemic index of cereal grains commonly utilized in pig nutrition	Anim. Feed Sci. Technol.	174	163-173	2012		
39812	0	Sabouri A., Rabiei B., Toorchi M., Aharizad S., Moumeni A.	Mapping quantitative trait loci (QTL) associated with cooking quality in rice (Oryza sativa L.)	Aust J Crop Sci	6	808-814	2012		
39813	0	Mondal A., Dutta S., Nandi S., Das S., Chaudhuri S.	Changes in defence-related enzymes in rice responding to challenges by Rhizoctonia solani	Archives of Phytopathology and Plant Protection	45	1840-1851	2012		
39814	0	Dwivedi B.S., Singh V.K., Shukla A.K., Meena M.C.	Optimizing dry and wet tillage for rice on a Gangetic alluvial soil: Effect on soil characteristics, water use efficiency and productivity of the rice-wheat system	European Journal of Agronomy	43	155-165	2012		
39815	0	Tajul M.I., Motoyama T., Hatanaka A., Sariah M., Osada H.	Green-odour compounds have antifungal activity against the rice blast fungus Magnaporthe oryzae	European Journal of Plant Pathology	132	91-100	2012		
39816	0	Aye S.S., Matsumoto M.	Pathogenicity and symptom expressions of Rhizoctonia solani, R. oryzae and R. oryzae-sativae to some commercial cultivars of rice in Myanmar	Archives of Phytopathology and Plant Protection	45	1991-1996	2012		
39817	0	Kalmeshwer Gouda P., Mohan Kumar Varma C., Saikumar S., Kiran B., Shenoy V., Shashidhar H.E.	Direct selection for grain yield under moisture stress in Oryza sativa cv. IR58025B ?? Oryza meridionalis population	Crop Sci.	52	644-653	2012		
39818	0	Nevame A.Y.M., Andrew E., Sisong Z., Demba S., Feng H., Wenchuang H., Guosheng X., Deming J.	Identification of interspecific grain yield heterosis between two cultivated rice species Oryza sativa L. and Oryza glaberrima Steud	Aust J Crop Sci	6	1558-1564	2012		
39819	0	Yao F., Huang J., Cui K., Nie L., Xiang J., Liu X., Wu W., Chen M., Peng S.	Agronomic performance of high-yielding rice variety grown under alternate wetting and drying irrigation	Field Crops Res.	126	16-22	2012		
39820	0	Hu S.K., Zeng D.L., Su Y., Shi Z-.Y., Ye W.J., Dong G.J., Zhu L., Hu J., Qian Q., Guo L.B.	QTL analysis of nitrogen content of plant shoot under two nitrogen conditions in rice (Oryza sativa L.)	Aust J Crop Sci	6	1737-1744	2012		
39821	0	Ding Z.S., Zhou B.Y., Sun X.F., Zhao M.	High Light Tolerance is Enhanced by Overexpressed PEPC in Rice Under Drought Stress	Acta Agronomica Sinica	38	285-292	2012		
39822	0	Atera E.A., Itoh K., Azuma T., Ishii T.	Response of NERICA rice to Striga hermonthica infections in western Kenya	Int J Agric Biol	14	271-275	2012		
39823	0	Wei D., Cui K., Pan J., Wang Q., Wang K., Zhang X., Xiang J., Nie L., Huang J.	Identification of quantitative trait locifor grain yield and its componentsin response to lownitrogen applicationin rice	Aust J Crop Sci	6	986-994	2012		
39824	0	Rathi S., Sarma R.N.	Microsatellite diversity in indigenous glutinous rice landraces of Assam	Indian J. Biotechnol.	11	23-29	2012		
39825	0	Chaubey M.K.	Fumigant toxicity of essential oils and pure compounds against Sitophilus oryzae L. (Coleoptera: Curculionidae)	Biological Agriculture and Horticulture	28	111-119	2012		
39826	0	Aye S.S., Matsumoto M.	Characterisation of antagonistic soil microbes against Rhizoctonia spp. and Sclerotium hydrophilum	Archives of Phytopathology and Plant Protection	45	2465-2473	2012		
39827	0	Raghuveera Rao P., Sailaja B., Desiraju S., Nageswara Rao D., Voleti S.R., Satyanarayana Reddy P., Sudarsana Rao G.V.	Variable radiation use efficiency in rice cultures grown at different locations	Indian Journal of Plant Physiology	17	57-60	2012		
39828	0	Yang Y.Q., Yang M., Li M.H., Zhou E.X.	Cloning and functional analysis of an endo-PG-encoding gene Rrspg1 of Rhizoctonia solani, the causal agent of rice sheath blight	Canadian Journal of Plant Pathology	34	436-447	2012		
39829	0	Wang W., Lu J., Ren T., Li X., Su W., Lu M.	Evaluating regional mean optimal nitrogen rates in combination with indigenous nitrogen supply for rice production	Field Crops Res.	137	37-48	2012		
39830	0	Joe M.M., Islam M.R., Karthikeyan B., Bradeepa K., Sivakumaar P.K., Sa T.	Resistance responses of rice to rice blast fungus after seed treatment with the endophytic Achromobacter xylosoxidans AUM54 strains	Crop Protection	42	141-148	2012		
39831	0	Kumari P., Ahuja U., Maheswaran M., Chawla V., Battan K.R.	Variability pattern of intact and split grains in rils' of cross bas 370 x asd 16	Ann Biol	28	41-44	2012		
39832	0	Singh A.P., Singh A.K., Chaturvedi S., Singh S., Mishra O.P.	Bio-efficacy of sulfonylurea herbicides on mixed weed flora in transplanted rice	Indian Journal of Agricultural Research	46	9-15	2012		
39833	0	Chen Y., Zhang A.F., Wang W.X., Zhang Y., Gao T.C.	Baseline sensitivity and efficacy of thifluzamide in Rhizoctonia solani	Annals of Applied Biology	161	247-254	2012		
39834	0	Singh A.K.	Probable Agricultural Biodiversity Heritage Sites in India: XIII. Lower Gangetic Plain or delta region	Asian Agrihist	16	237-260	2012		
39835	0	Rao D.N., Voleti S.R., Subrahmanyam D., Rao P.R., Ramesha M.S.	Heterosis for antioxidant enzymes in rice hybrid under abiotic stress conditions	Indian Journal of Plant Physiology	17	175-178	2012		
39836	0	Sudhakar P., Latha P., Babu P.R., Sujatha K., Reddy K.R.	Identification of thermotolerant rice genotypes at seedling stage using tir technique in pursuit of global warming	Indian Journal of Plant Physiology	17	185-188	2012		
39837	0	Bijay-Singh, Varinderpal-Singh, Yadvinder-Singh, Thind H.S., Kumar A., Gupta R.K., Kaul A., Vashistha M.	Fixed-time adjustable dose site-specific fertilizer nitrogen management in transplanted irrigated rice (Oryza sativa L.) in South Asia	Field Crops Res.	126	63-69	2012		
39838	0	You-Xin Y., Yan-Hong L., Jing-Fei T., Qasim S.M., Zhi-Xiong C., Lan W., Jin-Quan L., Xiang-Dong L., Yong-Gen L.	Wide-compatibility gene S 5 n exploited by functional molecular markers and its effect on fertility of intersubspecific rice hybrids	Crop Sci.	52	669-675	2012		
39839	0	Rout S., Thatoi H.N., Tewari S.N.	Performance of aqueous extract of Aegle marmelos based Amaext-a, an antifungal product against Pyricularia grisea causing blast disease of rice	Archives of Phytopathology and Plant Protection	45	2507-2518	2012		
39840	0	Qu H., Tao H., Tao Y., Liu M., Shen K., Lin S.	Ground cover rice production system increases yield and nitrogen recovery efficiency	Agron J	104	1399-1407	2012		
39841	0	Yang Y.C., Ni D.H., Song F.S., Li L., Lu X.Z., Li Z.F., Yang J.B.	Identification of QTLs for Rice Starch RVA Profile Properties in Different Ecological Sites	Acta Agronomica Sinica	38	264-274	2012		
39842	0	Nath D.J., Baruah R., Ozah B., Gogoi D., Barooah R.C., Borah D.K.	Potentiality of diverse organic inputs with low chemical fertilizer on microbial biomass carbon, soil enzymes and crop yield in paddy soil	Indian Journal of Agricultural Research	46	249-255	2012		
39843	0	Grace P.R., Antle J., Aggarwal P.K., Ogle S., Paustian K., Basso B.	Soil carbon sequestration and associated economic costs for farming systems of the Indo-Gangetic Plain: A meta-analysis	Agriculture, Ecosystems and Environment	146	137-146	2012		
39844	0	Tanaka A., Toriyama K., Kobayashi K.	Nitrogen supply via internal nutrient cycling of residues and weeds in lowland rice farming	Field Crops Res.	137	251-260	2012		
39845	0	Wang Y., Xin H.S., Li Y.Z., Zhang W.W., Xia K., Wang Z.B., Li M., Zhang Y.G.	The effects of different processing methods on the estimated nutritional value of rice bran according to the NRC-2001 model 5or DVE/OEB system 6	J. Anim. Feed Sci.	21	503-520	2012		
39846	0	Sharma V., Prabhakara J., Kachroo D., Samanta A.	Influence of puddling intensity and organic amendments on water productivity under SRI and conventional transplanting of rice and their residual effect on succeeding wheat crop	Indian Journal of Agricultural Research	46	75-79	2012		
39847	0	Lou Y., Zhou W., Ren L.	Elevated UV-B radiation increased CH 4 emission in transgenic rice from a paddy soil	Agriculture, Ecosystems and Environment	151	16-20	2012		
39848	0	Mishra R., Sharma H.K., Sengar G.	Quantification of rice bran oil in oil blends	Grasas y Aceites	63	53-60	2012		
39849	0	Patni B., Guru S.K.	Morphophysiological and biochemical parameters associated with competitive ability of rice genotypes against weeds	Indian Journal of Plant Physiology	17	215-223	2012		
39850	0	Datt I., Mehla B.S., Goyat B., Kaliramana R.S.	Variability and Correlation Coefficient Analysis of plant Height, Yield and Yield Components in Rice (Oryza sativa L.)	Ann Biol	28	45-52	2012		
39851	0	Singh U.B., Sahu A., Singh R.K., Singh D.P., Meena K.K., Srivastava J.S., Renu, Manna M.C.	Evaluation of biocontrol potential of Arthrobotrys oligospora against Meloidogyne graminicola and Rhizoctonia solani in Rice (Oryza sativa L.)	Biological Control	60	262-270	2012		
39852	0	Saranya Devi E., Vijayendra S.V.N., Shamala T.R.	Exploration of rice bran, an agro-industry residue, for the production of intra- and extra-cellular polymers by Sinorhizobium meliloti MTCC 100	Biocatalysis and Agricultural Biotechnology	1	80-84	2012		
39853	0	Sharma R., Modgil M., Sharma P., Saini U.	Agrobacterium-mediated transfer of chitinase gene in apple (Malus ?? domestica Borkh.) rootstock MM106	Indian Journal of Horticulture	69	1-6	2012		
39854	0	Huang Y., Chen D.C., Zhou W., Ren W.J., Yang W.Y.	Variability and correlation analysis between area of single seedling occupancy (ASSO) and rice individual characters under non-uniformity spatial distribution	Aust J Crop Sci	6	1606-1612	2012		
39855	0	Huang M., Zou Y., Jiang P., Xia B., Feng Y., Cheng Z., Mo Y.	Effect of tillage on soil and crop properties of wet-seeded flooded rice	Field Crops Res.	129	28-38	2012		
39856	0	Nayak A.K., Gangwar B., Shukla A.K., Mazumdar S.P., Kumar A., Raja R., Kumar A., Kumar V., Rai P.K., Mohan U.	Long-term effect of different integrated nutrient management on soil organic carbon and its fractions and sustainability of rice-wheat system in Indo Gangetic Plains of India	Field Crops Res.	127	129-139	2012		
39857	0	Raja R., Ravisankar N., Chaudhuri S.G., Ambast S.K., Chand S., Din M., Meena B., Subramani T., Ahmed Z.	Effect of supplemental irrigation on yield and water productivity of dry season crops in Andaman and Nicobar Islands	Indian Journal of Agricultural Sciences	82	122-126	2012		
39858	0	Suji K.K., Prince K.S.J., Mankhar P.S., Kanagaraj P., Poornima R., Amutha K., Kavitha S., Biji K.R., Gomez S.M., Babu R.C.	Evaluation of rice (Oryza sativa L.) near iso-genic lines with root QTLs for plant production and root traits in rainfed target populations of environment	Field Crops Res.	137	89-96	2012		
39859	0	Noda H., Watanabe K., Kawai S., Yukuhiro F., Miyoshi T., Tomizawa M., Koizumi Y., Nikoh N., Fukatsu T.	Bacteriome-associated endosymbionts of the green rice leafhopper Nephotettix cincticeps (Hemiptera: Cicadellidae)	Appl. Entomol. Zool. (Jpn.)	47	217-225	2012		
39860	0	Cha-Um S., Singh H.P., Samphumphuang T., Kirdmanee C.	Calcium-alleviated salt tolerance in indica rice (Oryza sativa L. Spp. indica): Physiological and morphological changes	Aust J Crop Sci	6	176-182	2012		
39861	0	Qiao J., Yang L., Yan T., Xue F., Zhao D.	Nitrogen fertilizer reduction in rice production for two consecutive years in the Taihu Lake area	Agriculture, Ecosystems and Environment	146	103-112	2012		
39862	0	Khatun R., Shahinul Islam S.M., Ara I., Tuteja N., Bari M.A.	Effect of cold pretreatment and different media in improving anther culture response in rice (Oryza sativa L.) in Bangladesh	Indian J. Biotechnol.	11	458-463	2012		
39863	0	Seenivasan N., David P.M.M., Vivekanandan P., Samiyappan R.	Biological control of rice root-knot nematode, Meloidogyne graminicola through mixture of Pseudomonas fluorescens strains	Biocontrol Sci Technol	22	611-632	2012		
39864	0	Bhadru D., Lokanadha Reddy D., Ramesha M.S.	Studies on combining ability for development of new hybrids in rice	Indian Journal of Agricultural Research	46	97-109	2012		
39865	0	Kundu S., Bothra A., Tisa L.S., Sen A.	In silico analysis reveals the role of horizontally transferred genes (HGTS) in shaping the pathogenicity of xanthomonas	Indian J. Biotechnol.	11	404-411	2012		
39866	0	Huang D.R., Chen J., Lai F.X., Liu G.J., Zhuang J.Y.	Analysis of Quantitative Trait Loci for Resistance to Brown Planthopper in Dongxiang Wild Rice (Oryza rufipogon Griff.)	Acta Agronomica Sinica	38	210-214	2012		
39867	0	Salgotra R.K., Gupta B.B., Ahmed M.I.	Characterization of thermo-sensitive genic male sterility (TGMS) rice genotypes: (Oryza sativa L.) at different altitudes	Aust J Crop Sci	6	957-962	2012		
39868	0	Hou Y., Hou G., Qi H., Chen C., Li X., Zhao M., Dong S.	Analysis of photothermic resource use efficiency and potential increases in crop yields in high-yielding regions of eastern Asia	Aust J Crop Sci	6	784-792	2012		
39869	0	Boriboonkaset T., Theerawitaya C., Pichakum A., Cha-um S., Takabe T., Kirdmanee C.	Expression levels of some starch metabolism related genes in flag leaf of two contrasting rice genotypes exposed to salt stress	Aust J Crop Sci	6	1579-1586	2012		
39870	0	Matsushita K., Iida S., Ideta O., Sunohara Y., Ishii T.	Use of a universal testing machine for quantitative evaluation of the shattering habit of rice (Oryza sativa L.) for whole-crop silage use	Grassland Science	58	170-173	2012		
39871	0	Wang F., Ye C., Zhu L., Nie L., Cui K., Peng S., Lin Y., Huang J.	Yield differences between Bt transgenic rice lines and their non-Bt counterparts, and its possible mechanism	Field Crops Res.	126	8-15	2012		
39872	0	Feng F., Xu X., Du X., Tong H., Luo L., Mei H.	Assessment of drought resistance among wild rice accessions using a protocol based on single-tiller propagation and PVC-tube cultivation	Aust J Crop Sci	6	1204-1211	2012		
39873	0	Liu H., Jia S., Shen D., Liu J., Li J., Zhao H., Han S., Wang Y.	Four AUXIN RESPONSE FACTOR genes downregulated by microRNA167 are associated with growth and development in Oryza sativa	Functional Plant Biology	39	736-744	2012		
39874	0	Kocherla P., Aparna K., Lakshmi D.N.	Development and evaluation of RTE (Ready to Eat) extruded snack using egg albumin powder and cheese powder	Agricultural Engineering International: CIGR Journal	14	179-187	2012		
39875	0	Lata K., Singh K.P., Nandal D.P., Om H., Thakral S.K.	Yield, Economics and Nutrient uptake of wheat as influenced by organic manures and their residual effect on rice in Rice-wheat system	Annals of Agri Bio Research	17	51-55	2012		
39876	0	Juliano B.O., Tua?o A.P.P., Monteroso D.N., Aoki N., Mestres C., Duldulao J.B.A., Bergonio K.B.	Replacement of acetate with ammonium buffer to determine apparent amylose content of milled rice	Cereal Foods World	57	14-19	2012		
39877	0	Motobayashi T., Genka M., Phong T.K., Watanabe H.	Effects of formulation and treatment method of imidacloprid in nursery boxes on aquatic insects inhabiting rice paddy fields	Japanese Journal of Applied Entomology and Zoology	56	169-172	2012		
39878	0	Chen S., Zhang X., Zhang G., Wang D., Xu C.	grain yield and dry matter accumulation response to enhanced panicle nitrogen application under different planting methods (Oryza sativa L.)	Aust J Crop Sci	6	1630-1636	2012		
39879	0	Jha A.N., Srivastava C., Dhar S.	Resistance in wheat genotypes to rice (Oryza sativa) weevil (Sitophilus oryzae)	Indian Journal of Agricultural Sciences	82	1093-1095	2012		
39880	0	Chang J., Duan X., Cui J., Xue W., Zhang Q.	Differential molecular responses of aphid-sensitive and aphid-resistant sorghum lines to aphid infestation	Arthropod Plant Interact	6	113-120	2012		
39881	0	Dadhich S.K., Pandey A.K., Prasanna R., Nain L., Kaushik B.D.	Optimizing crop residue-based composts for enhancing soil fertility and crop yield of rice	Indian Journal of Agricultural Sciences	82	85-88	2012		
39882	0	El-Hendawy S., Sone C., Ito O., Sakagami J.I.	Differential growth response of rice genotypes based on quiescence mechanism under flash flooding stress	Aust J Crop Sci	6	1587-1597	2012		
39883	0	Devi H.M., Basha S.T., Eswara Reddy N.P., Bhaskar Reddy B.V.	Biological control of sclerotium oryzae (Cattanoe) causing stem rot of rice (Oryza sativa L.)	Biopesticides International	8	71-81	2012		
39884	0	Lal M., Singh D.P.	Genotype x environment interaction in rice (Oryza Sativa l.)	Ann Biol	28	53-55	2012		
39885	0	Beena R., Thandapani V., Chandrababu R.	Physio-morphological and biochemical characterization of selected recombinant inbred lines of rice for drought resistance	Indian Journal of Plant Physiology	17	189-193	2012		
39886	0	Gamalath N.S., Tufail M., Sharma P.N., Mori N., Takeda M., Nakamura C.	Differential expression of vitellogenin mRNA and protein in response to rice resistance genes in two strains of Nilaparvata lugens (Hemiptera: Delphacidae) with different levels of virulence	Appl. Entomol. Zool. (Jpn.)	47	9-16	2012		
39887	0	Pu L., Xie G., Ji C., Ling B., Zhang M., Xu D., Zhou G.	Transmission characteristics of Southern rice black-streaked dwarf virus by rice planthoppers	Crop Protection	41	71-76	2012		
39888	0	Subudhi P.K., Parco A., Singh P.K., DeLeon T., Karan R., Biradar H., Cohn M.A., Brar D.S., Sasaki T.	Genetic architecture of seed dormancy in U.S. weedy rice in different genetic backgrounds	Crop Sci.	52	2564-2575	2012		
39889	0	Yonemaru J.I., Morita S.	Image analysis of grain shape to evaluate the effects of high temperatures on grain filling of rice, Oryza sativa L.	Field Crops Res.	137	268-271	2012		
39890	0	Zhang T., Li L., Hu F., Zhao X., Fu B., Yang D.	Analysis of ESTs from a Normalized cDNA Library of the Rhizome Tip of Oryza longistaminata	Journal of Plant Biology	55	33-42	2012		
39891	0	Ramya B., Saravanan K., Kumar P.S.	Genetic parameters of variability, correlation and path coefficient studies for grain yield and other yield attributes traits in rice (Oryza Sativa L.)	Plant Archives	12	711-715	2012		
39892	0	Wang Q., Zhang L., Zhang J., Shen Q., Ran W., Huang Q.	Effects of compost on the chemical composition of SOM in density and aggregate fractions from rice-wheat cropping systems as shown by solid-state 13C-NMR spectroscopy	Journal of Plant Nutrition and Soil Science	175	920-930	2012		
39893	0	Bashir K., Ishimaru Y., Nishizawa N.K.	Molecular mechanisms of zinc uptake and translocation in rice	Plant Soil	361	189-201	2012		
39894	0	Anandan A., Arunachalam P.	Relative proportion of antioxidative enzyme activity in locally grown Indian rice cultivars (Oryza sativa L.) under submergence condition	J Plant Interact	7	183-192	2012		
39895	0	Nanthakumar M., Jhansi Lakshmi V., Shashi Bhushan V., Balachandran S.M., Mohan M.	Decrease of rice plant resistance and induction of hormesis and carboxylesterase titre in brown planthopper, Nilaparvata lugens (St?l) by xenobiotics	Pestic Biochem Physiol	102	146-152	2012		
39896	0	Ali A., Ahmad F., Biondi A., Wang Y., Desneux N.	Potential for using Datura alba leaf extracts against two major stored grain pests, the khapra beetle Trogoderma granarium and the rice weevil Sitophillus oryzae	J Pest Sci (2004)	85	359-366	2012		
39897	0	Niones J.M., Suralta R.R., Inukai Y., Yamauchi A.	Field evaluation on functional roles of root plastic responses on dry matter production and grain yield of rice under cycles of transient soil moisture stresses using chromosome segment substitution lines	Plant Soil	359	107-120	2012		
39898	23413968	Wu Y.P., Li J., Zhao J.L., Su T.J., Luo A.R., Fan R.J., Chen M.C., Wu C.S., Zhu C.D.	The complete mitochondrial genome of the rice moth, corcyra cephalonica	Journal of Insect Science	12	72	2012		
39900	0	Khan M.R., Zaidi B., Haque Z.	Nematicides control rice root-knot, caused by Meloidogyne graminicola	Phytopathol. Mediterr.	51	298-306	2012		
39901	0	Deng J., Zhou Z., Zheng X., Liu C., Yao Z., Xie B., Cui F., Han S., Zhu J.	Annual emissions of nitrous oxide and nitric oxide from rice-wheat rotation and vegetable fields: A case study in the Tai-Lake region, China	Plant Soil	360	37-53	2012		
39902	0	Ladhalakshmi D., Laha G.S., Singh R., Karthikeyan A., Mangrauthia S.K., Sundaram R.M., Thukkaiyannan P., Viraktamath B.C.	Isolation and characterization of Ustilaginoidea virens and survey of false smut disease of rice in India	Phytoparasitica	40	171-176	2012		
39903	0	Kato A., Miyake T., Nishigata K., Tateishi H., Teraoka T., Arie T.	Use of fluorescent proteins to visualize interactions between the Bakanae disease pathogen Gibberella fujikuroi and the biocontrol agent Talaromyces sp. KNB-422	Journal of General Plant Pathology	78	54-61	2012		
39904	0	Patil V.A., Vashi R.D., Patil P.P., Shinde D.A.	Line ?? tester analysis in rice (Oryza Sativa L.)	Plant Archives	12	463-469	2012		
39905	0	Benbi D.K., Toor A.S., Kumar S.	Management of organic amendments in rice-wheat cropping system determines the pool where carbon is sequestered	Plant Soil	360	145-162	2012		
39906	0	Jiang L.B., Zhao K.F., Wang D.J., Wu J.C.	Effects of different treatment methods of the fungicide jinggangmycin on reproduction and vitellogenin gene (Nlvg) expression in the brown planthopper Nilaparvata lugens St?l (Hemiptera:Delphacidae)	Pestic Biochem Physiol	102	51-55	2012		
39907	0	Venkat Reddy A., Sunitha Devi R., Reddy D.V.V.	Evaluation of Cyazypyr - A new molecule against major insect pests of rice	Pestology	36	27-30	2012		
39908	0	Kiran Kumar R.	Bio-efficacy of acaricides against leafmite, oligonychus oryzae (hirst) (acari?a: Tetranychidae) on rice oryza sativa l	Pestology	36	43-46	2012		
39909	0	Lai Y., Xu B., He L., Lin M., Cao L., Wu Y., Mou S., He S.	Cadmium uptake by and translocation within rice (Oryza Sativa L.) seedlings as affected by iron plaque and Fe2O3	Pak J Bot	44	1557-1561	2012		
39910	0	Zhao X., Zhang T., Huang L., Wu H., Hu F., Zhang F., Zhu L., Fu B.	Comparative Metabolite Profiling and Hormone Analysis of Perennial and Annual Rice	Journal of Plant Biology	55	73-80	2012		
39911	0	Liu J.L., Yang X., Chen X., Wu J.C.	Suppression of fecundity, Nlvg gene expression and vitellin content in Nilaparvata lugens St?l (Hemiptera: Delphacidae) adult females exposed to indoxacarb and chlorantraniliprole	Pestic Biochem Physiol	104	206-211	2012		
39912	0	Goswami P., Verma N., Gyanandra K.M., Singh M.D.	Development of organic farming package for scented rice-potato cropping system	Plant Archives	12	769-773	2012		
39913	0	Wei D., Cui K., Ye G., Pan J., Xiang J., Huang J., Nie L.	QTL mapping for nitrogen-use efficiency and nitrogen-deficiency tolerance traits in rice	Plant Soil	359	281-295	2012		
39914	0	Zhang J., Cai Z., Yang W., Zhu T., Yu Y., Yan X., Jia Z.	Long-term field fertilization affects soil nitrogen transformations in a rice-wheat-rotation cropping system	Journal of Plant Nutrition and Soil Science	175	939-946	2012		
39915	0	Malviya M.K., Sharma A., Pandey A., Rinu K., Sati P., Palni L.M.S.	Bacillus subtilis NRRL B-30408: A potential inoculant for crops grown under rainfed conditions in the mountains	Journal of Soil Science and Plant Nutrition	12	811- 824	2012		
39917	0	Wang J., Pan X., Liu Y., Zhang X., Xiong Z.	Effects of biochar amendment in two soils on greenhouse gas emissions and crop production	Plant Soil	360	287-298	2012		
39918	0	Hadi A., Fatah L., Affandi D.N., Bakar R.A., Inubushi K.	Population and genetic diversities of bacteria related to nitrous oxide and methane in peat soils of South Kalimantan, Indonesia	Malaysian Journal of Soil Science	16	121-135	2012		
39919	0	Phattarakul N., Rerkasem B., Li L.J., Wu L.H., Zou C.Q., Ram H., Sohu V.S., Kang B.S., Surek H., Kalayci M., Yazici A., Zhang F.S., Cakmak I.	Biofortification of rice grain with zinc through zinc fertilization in different countries	Plant Soil	361	131-141	2012		
39920	0	Ogata T., Kida Y., Arai T., Kishi Y., Manago Y., Murai M., Matsushita Y.	Overexpression of tobacco ethylene response factor NtERF3 gene and its homologues from tobacco and rice induces hypersensitive response-like cell death in tobacco	Journal of General Plant Pathology	78	8-17	2012		
39921	0	Singh A., Panda S.N.	Integrated salt and water balance modeling for the management of waterlogging and salinization. II: Application of SAHYSMOD	Journal of Irrigation and Drainage Engineering	138	964-971	2012		
39922	0	Liu D., Lin Y., Wang X.	Effects of lanthanum on growth, element uptake, and oxidative stress in rice seedlings	Journal of Plant Nutrition and Soil Science	175	907-911	2012		
39923	0	Rao G.B.S., Wahab K.	Screening of greengram varieties for cauvery deltaic zone of Tamil Nadu, India	Plant Archives	12	967-968	2012		
39924	0	Kiran Kumar R., Venkateshulu B., Veeranna R.	Efficacy of imidacloprid 0.3% GR against brown plant hopper (BPH) nilaparvata lugens (STAL) (cicadellidae: Homoptera) on paddy oryza sativa l	Pestology	36	44-47	2012		
39925	0	Yang C., Yang X., Fu Q., Xu K., Lu B.R.	Limited divergence among populations of rice striped stem borer in southeast China caused by gene flow: Implications for resistance management	J Syst Evol	50	443-453	2012		
39926	0	Garcia M.C., de Toledo Benassi M., Soares M.S.	Physicochemical and sensory profile of rice bran roasted in microwave [Perfil fisico-quimico e sensorial de farelos de arroz torrados em micro-ondas]	Ciencia e Tecnologia de Alimentos	32	754-761	2012		
39927	0	Srivastava S., Dubey R.S.	Nitric oxide alleviates manganese toxicity by preventing oxidative stress in excised rice leaves	Acta Physiologiae Plantarum	34	819-825	2012		
39928	0	LI J.J., XIAO Y.L., XIAO G.Y.	Selection of Submergence Tolerant Homozygous Line by STS Marker and Twice Submergence Stress	Journal of Integrative Agriculture	11	1940-1947	2012		
39929	0	Setyaningsih W., Palma M., Barroso C.G.	A new microwave-assisted extraction method for melatonin determination in rice grains	J. Cereal Sci.	56	340-346	2012		
39930	0	Jeon W.T.	Effects of nitrogen levels on growth, yield and nitrogen uptake of fiber-rich cultivar, Goami 2	Afr. J. Biotechnol.	11	131-137	2012		
39931	0	Sharifi P.	Graphic analysis of salinity tolerance traits of rice (Oryza sativa L.) using biplot method	Cereal Res. Commun.	40	342-350	2012		
39932	0	ZHU Y.J., HU G.P., LIU B., XIE H.A., ZHENG X.F., ZHANG J.F.	Using Phospholipid Fatty Acid Technique to Analysis the Rhizosphere Specific Microbial Community of Seven Hybrid Rice Cultivars	Journal of Integrative Agriculture	11	1817-1827	2012		
39933	22611233	Cao H., Zhang J., Xu J., Xu J., Ye J., Yun Z., Xu Q., Deng X.	Comprehending crystalline ??-carotene accumulation by comparing engineered cell models and the natural carotenoid-rich system of citrus	J. Exp. Bot.	63	4403-4417	2012		
39934	22306463	Bailey G.D., Hyun J.K., Mitra A.K., Kingston R.L.	A structural model for the generation of continuous curvature on the surface of a retroviral capsid	J. Mol. Biol.	417	212-223	2012		
39935	0	Shimono H., Kumagai E., Kiminarita N., Ito M., Takahashi Y., Sasaki N., Horai K.	Interactive effects of soil salinity and temperature on vegetative growth of rice after flooded by Tsunami 11 March 2011	Japanese Journal of Crop Science	81	441-448	2012		
39936	0	Heo S.H., Han K.B., Lee Y.J., Kim J.H., Yoon K.H., Han M.D., Shin K.S., Kim W.J.	Recombinant human granulocyte macrophage colony-stimulating factor (rhGM-CSF) could accelerate burn wound healing in hamster skin	Animal Cells Syst (Seoul)	16	207-214	2012		
39937	0	Zhao L., Liu T., An X., Gu R.	Evolution and expression analysis of the ??-glucosidase (GLU) encoding gene subfamily in maize	Genes and Genomics	34	179-187	2012		
39938	0	Kikuchi R., Kawahigashi H., Oshima M., Ando T., Handa H.	The differential expression of HvCO9, a member of the CONSTANS-like gene family, contributes to the control of flowering under short-day conditions in barley	J. Exp. Bot.	63	773-784	2012		
39939	0	Gupta K., Gupta B., Ghosh B., Sengupta D.N.	Spermidine and abscisic acid-mediated phosphorylation of a cytoplasmic protein from rice root in response to salinity stress	Acta Physiologiae Plantarum	34	29-40	2012		
39940	22349012	Cao X., Zhou J., Gong X., Zhao G., Jia J., Qi X.	Identification and Validation of a Major Quantitative Trait Locus for Slow-rusting Resistance to Stripe Rust in Wheat	J Integr Plant Biol	54	330-344	2012		
39941	0	Sonah H., Deshmukh R., Chand S., Srinivasprasad M., Rao G., Upreti H., Singh A., Singh N., Sharma T.	Molecular mapping of quantitative trait loci for flag leaf length and other agronomic traits in rice (Oryza sativa)	Cereal Res. Commun.	40	362-372	2012		
39942	22747909	Thiebaut F., Grativol C., Carnavale-Bottino M., Rojas C.A., Tanurdzic M., Farinelli L., Martienssen R.A., Hemerly A.S., Ferreira P.C.G.	Computational identification and analysis of novel sugarcane microRNAs	BMC Genomics	13	290	2012		
39943	0	Zhao Q., Selomulya C., Xiong H., Chen X.D., Ruan X., Wang S., Xie J., Peng H., Sun W., Zhou Q.	Comparison of functional and structural properties of native and industrial process-modified proteins from long-grain indica rice	J. Cereal Sci.	56	568-575	2012		
39944	0	Wang T., Liu L.Y., Tang Y.Y., Zhang X.B., Zhang M.D., Zheng Y.L., Zhang F.D.	Using the Phosphomannose Isomerase (PMI) Gene from Saccharomyces cerevisiae for Selection in Rice Transformation	Journal of Integrative Agriculture	11	1391-1398	2012		
39945	0	Gowda S.J.M., Randhawa G.J., Bisht I.S., Firke P.K., Singh A.K., Abraham Z., Dhillon B.S.	Morpho-agronomic and simple sequence repeat-based diversity in colored rice (Oryza sativa L.) germplasm from peninsular India	Genet. Resour. Crop Evol.	59	179-189	2012		
39946	0	Canche Moo L.R., Gonzalez A.K., Rodriguez-Zapata L.C., Suarez V., Castano E.	Expression of RNA polymerase IV and V in Oryza sativa	Electronic Journal of Biotechnology	15	1-8	2012		
39947	0	Zhu L.J., Dogan H., Gajula H., Gu M.H., Liu Q.Q., Shi Y.C.	Study of kernel structure of high-amylose and wild-type rice by X-ray microtomography and SEM	J. Cereal Sci.	55	1-5	2012		
39948	0	Najafabadi M.S.	Improving rice (oryza sativa L.) drought tolerance by suppressing a NF-YA transcription factor	Iran. J. Biotechnol.	10	40-48	2012		
39949	0	Chen H., Wei T., Saotome A., Sakaguchi K., Shikamoto Y., Mizuno H., Akita F., Shimizu T., Uehara-Ichiki T., Omura T.	Aggregation ability of virus-specific antibodies is correlated with their capacity to neutralize rice dwarf virus	Jpn. Agric. Res. Q.	46	65-71	2012		
39950	0	Akcan N.	Production of extracellular protease in submerged fermentation by Bacillus licheniformis ATCC 12759	Afr. J. Biotechnol.	11	1729-1735	2012		
39951	0	Li K.T., Charng Y.C.	The use of hygromycin phosphotransferase gene (hpt) with an artificial intron to obtain marker-off transgenic plants	Afr. J. Biotechnol.	11	1330-1336	2012		
39952	0	Frank T., Reichardt B., Shu Q., Engel K.H.	Metabolite profiling of colored rice (Oryza sativa L.) grains	J. Cereal Sci.	55	112-119	2012		
39953	22291005	Srinivasa C., Sharanaiah U., Shivamallu C.	Molecular detection of plant pathogenic bacteria using polymerase chain reaction single-strand conformation polymorphism	Acta Biochim. Biophys. Sin. (Shanghai)	44	217-223	2012		
39954	0	de Rocio Canche Moo L., Arroyo Herrera A., Rodriguez-Zapata L., Suarez V., Castano E.	Epitope selection for multipeptide proteins: The case of RNA polymerase IV and V	Biologia	67	845-851	2012		
39955	0	Guleria S., Sharma V., Marathi B., Anand S., Singh N.K., Mohapatra T., Krishnan S.G., Prabhu K.V., Singh A.K.	Molecular mapping of grain physico-chemical and cooking quality traits using recombinant inbred lines in rice (Oryza sativa L.)	J. Plant Biochem. Biotechnol.	21	1-10	2012		
39956	0	ZHAO Z.W., LUO A.C., LE T., LI S.G.	Identification of Quantitative Trait Locus for Overwintering Germinability in Rice (Oryza sativa L.)	Journal of Integrative Agriculture	11	1767-1774	2012		
39957	22942093	Roy S., Banerjee A., Tarafdar J., Senapati B.K.	Detection of probable marker-free transgene-positive rice plants resistant to rice tungro disease from backcross progenies of transgenic Pusa Basmati 1	J. Genet.	91	213-218	2012		
39958	23065086	Cha D.H., Adams T., Rogg H., Landolt P.J.	Identification and Field Evaluation of Fermentation Volatiles from Wine and Vinegar that Mediate Attraction of Spotted Wing Drosophila, Drosophila suzukii	J. Chem. Ecol.	38	1419-1431	2012		
39959	0	Lian W.W., Tang Y.M., Gao S.Q., Zhang Z., Zhao X., Zhao C.P.	Phylogenetic Analysis and Expression Patterns of the MAPK Gene Family in Wheat (Triticum aestivum L.)	Journal of Integrative Agriculture	11	1227-1235	2012		
39960	0	Xu Q., Chen H., Wang C.H., Yu H.Y., Yuan X.P., Wang Y.P., Feng Y., Tang S.X., Wei X.H.	Genetic Diversity and Structure of New Inbred Rice Cultivars in China	Journal of Integrative Agriculture	11	1567-1573	2012		
39961	0	Panhwar Q.A., Othman R., Rahman Z.A., Meon S., Ismail M.R.	Isolation and characterization of phosphate-solubilizing bacteria from aerobic rice	Afr. J. Biotechnol.	11	2711-2719	2012		
39962	0	Roy S., Banerjee A., Tarafdar J., Senapati B.K., Dasgupta I.	Transfer of transgenes for resistance to rice tungro disease into high-yielding rice cultivars through gene-based marker-assisted selection	Journal of Agricultural Science	150	610-618	2012		
39963	22621926	Gan S.W., Tan E., Lin X., Yu D., Wang J., Tan G.M.Y., Vararattanavech A., Yeo C.Y., Soon C.H., Soong T.W., Pervushin K., Torres J.	The small hydrophobic protein of the human respiratory syncytial virus forms pentameric ion channels	Journal of Biological Chemistry	287	24671-24689	2012		
39964	0	Pinheiro T.M., de Araujo L.G., da Silva-Lobo V.L., Prabhu A.S., de Filippi M.C.	Tagging microsatellite marker to a blast resistance gene in the irrigated rice cultivar Cica-8 [Marcadores microssatelites ligados a gene de resistencia a brusone na cultivar de arroz irrigado cica-8]	Crop Breeding and Applied Biotechnology	12	164-170	2012		
39965	0	Chee K.Y., Tan P.L., Nadarajah K.	Characterisation of the barley oxalate oxidase gene and generation of rice transformant	Biotechnology	11	263-271	2012		
39966	22407977	Canziani G.A., Melero J.A., Lacy E.R.	Characterization of neutralizing affinity-matured human respiratory syncytial virus F binding antibodies in the sub-picomolar affinity range	Journal of Molecular Recognition	25	136-146	2012		
39967	23037808	Trujillo M.A., Oneal M.J., McDonough S., Qin R., Morris J.C.	A steep radioiodine dose response scalable to humans in sodium-iodide symporter (NIS)-mediated radiovirotherapy for prostate cancer	Cancer Gene Ther.	19	839-844	2012		
39968	0	Garcia A.C., Berbara R.L.L., Farias L.P., Izquierdo F.G., Hernandez O.L., Campos R.H., Castro R.N.	Humic acids of vermicompost as an ecological pathway to increase resistance of rice seedlings to water stress	Afr. J. Biotechnol.	11	3125-3134	2012		
39969	0	Mou S., Huang D., Liu Z., He S.	Functional analysis on GCC box and JERE box mediating signal pathway in rice response to stress	Chinese Journal of Applied and Environmental Biology	18	586-590	2012		
39970	0	Sakagami J.I., Sone C., Nakazono M.N.	Injury to rice plants by floods and resistance to submergence	Japanese Journal of Crop Science	81	1-9	2012		
39971	0	Sivakumar K., Karuppiah V., Sethubathi G.V., Thangaradjou T., Kannan L.	Response surface methodology for the optimization of ??-amylase production by Streptomyces sp. ML12 using agricultural byproducts	Biologia	67	32-40	2012		
39972	0	Su P., Liao X.L., Zhang Y., Huang H.	Influencing Factors on Rice Sheath Blight Epidemics in Integrated Rice-Duck System	Journal of Integrative Agriculture	11	1462-1473	2012		
39973	0	El-Naggar N.E.A., Abdelwahed N.A.M.	Optimization of process parameters for the production of alkali-tolerant carboxymethyl cellulase by newly isolated Streptomyces sp. strain NEAE-D	Afr. J. Biotechnol.	11	1185-1196	2012		
39974	22486511	Suzuki K., Kobayashi E., Yamashita H., Uenishi H., Churkina I., Plastow G., Hamasima N., Mitsuhashi T.	Structural analysis of MHC alleles in an RSV tumour regression chicken using a BAC library	Anim. Genet.	43	348-351	2012		
39975	0	Mahajan G., Timsina J., Jhanji S., Sekhon N.K., Kuldeep-Singh	Cultivar Response, Dry-Matter Partitioning, and Nitrogen-Use Efficiency in Dry Direct-Seeded Rice in Northwest India	Journal of Crop Improvement	26	767-790	2012		
39976	0	Tripathi D.K., Singh V.P., Kumar D., Chauhan D.K.	Impact of exogenous silicon addition on chromium uptake, growth, mineral elements, oxidative stress, antioxidant capacity, and leaf and root structures in rice seedlings exposed to hexavalent chromium	Acta Physiologiae Plantarum	34	279-289	2012		
39977	0	Zheng L., Zhang W., Liu S., Chen L., Liu X., Chen X., Ma J., Chen W., Zhao Z., Jiang L., Wan J.	Genetic relationship between grain chalkiness, protein content, and paste viscosity properties in a backcross inbred population of rice	J. Cereal Sci.	56	153-160	2012		
39978	0	Efisue A.A., Derera J.	Genotypic Response in Rice During the Vegetative Phase under Water Stress and Non-stress Conditions	Journal of Crop Improvement	26	816-834	2012		
39979	22385204	Dermine M., Desmecht D.	In vivo modulation of the innate response to pneumovirus by type-I and -III interferon-induced bos taurus Mx1	Journal of Interferon and Cytokine Research	32	332-337	2012		
39980	0	Kokubo T., Miyazaki A., Yoshida T., Yamamoto Y., Inoue Y., Okazaki H., Iwanaga Y., Kuroda S., Ju J., Wang Y.	Effect of slow release fertilizer on nitrogen absorption and fertilizer nitrogen recovery rate in Chinese high-yielding rice cultivars	Japanese Journal of Crop Science	81	424-431	2012		
39981	0	Zhu B., Yi L.X., Hu Y.G., Zeng Z.H., Tang H.M., Yang G.L., Xiao X.P.	Effects of Chinese Milk Vetch (Astragalus sinicus L.) Residue Incorporation on CH4 and N2O Emission from a Double-Rice Paddy Soil	Journal of Integrative Agriculture	11	1537-1544	2012		
39982	22215662	Dochow M., Krumm S.A., Crowe Jr., Moore M.L., Plemper R.K.	Independent structural domains in Paramyxovirus polymerase protein	Journal of Biological Chemistry	287	6878-6891	2012		
39983	0	Pale G., Das A., Pattanayak A.	Screening of rice (Oryza sativa L.) germplasm of North-Eastern India for early vegetative stage heat tolerance	Indian Journal of Genetics and Plant Breeding	72	217-220	2012		
39984	22888294	Yang Y., Chen K.	Molecular evolution of the ent-kaurenoic acid oxidase gene in Oryzeae	Genet. Mol. Biol.	35	448-454	2012		
39985	0	Sun P., Liu F., Tan L., Zhu Z., Fu Y., Sun C., Cai H.	Quantitative trait loci (QTLs) for potassium chlorate resistance and low temperature tolerance in seedling stage in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	72	405-414	2012		
39987	0	Lima M.G.S., Lopes N.F., Zimmer P.D., Meneghello G.E., Mendes C.R., do Amarante L.	Enzyme expression in indica and japonica rice cultivars under saline stress [Expressao de enzimas em cultivares de arroz indica e japonica sob estresse salino]	Acta Scientiarum - Biological Sciences	34	473-481	2012		
39988	0	Guertler P., Huber I., Pecoraro S., Busch U.	Development of an event-specific detection method for genetically modified rice Kefeng 6 by quantitative real-time PCR	Journal fur Verbraucherschutz und Lebensmittelsicherheit	7	63-70	2012		
39989	0	Ren D.Y., Li Y.F., Wang Z., Xu F.F., Guo S., Zhao F.M., Sang X.C., Ling Y.H., He G.H.	Identification and Gene Mapping of a multi-floret spikelet 1 (mfs1) Mutant Associated with Spikelet Development in Rice	Journal of Integrative Agriculture	11	1574-1579	2012		
39990	0	PAN S.G., HUANG S.Q., ZHAI J., WANG J.P., CAO C.G., CAI M.L., ZHAN M., TANG X.R.	Effects of N Management on Yield and N Uptake of Rice in Central China	Journal of Integrative Agriculture	11	1993-2000	2012		
39991	0	Sandhu N., Jain S., Chowdhury V.K., Jain R.K.	Microsatellite diversity among aerobic and lowland Indica rice genotypes with differential water requirements	Indian Journal of Genetics and Plant Breeding	72	463-467	2012		
39992	0	Chu S.H., Jiang W., Lee J., Chin J.H., Koh H.J.	QTL analyses of heterosis for grain yield and yield-related traits in indica-japonica crosses of rice (Oryza sativa L.)	Genes and Genomics	34	367-377	2012		
39993	21892730	Lucas S.J., Simkova H., Safar J., Jurman I., Cattonaro F., Vautrin S., Bellec A., Berges H., Dolezel J., Budak H.	Functional features of a single chromosome arm in wheat (1AL) determined from its structure	Functional and Integrative Genomics	12	173-182	2012		
39994	0	Nunkaew T., Kantachote D., Nitoda T., Kanzaki H.	The use of rice straw broth as an appropriate medium to isolate purple nonsulfur bacteria from paddy fields	Electronic Journal of Biotechnology	15	7-7	2012		
39995	0	Reflinur, Chin J.H., Jang S.M., Kim B., Lee J., Koh H.J.	QTLs for hybrid fertility and their association with female and male sterility in rice	Genes and Genomics	34	355-365	2012		
39996	0	Zhu C.F., Fu S.F., Kou G.Y., Chen H.Q., Yu L., Zhou X.	Prokaryotic expression and purification of attachment protein fragment of human respiratory syncytial virus	Chinese Journal of Biologicals	25	389-392	2012		
39997	0	Kombiok J.M., Buah S.S.J., Dzomeku I.K.	Rice Influence on Grain Yield of Maize in Maize/Rice Mixture in the Northern Guinea Savanna Zone of Ghana	Journal of Crop Improvement	26	87-100	2012		
39998	0	Nihei N., Masuda S., Tanoi K., Rai H., Nakanishi T.M.	Initial growth of some crops grown in amino acid as nitrogen source under aseptic condition	Japanese Journal of Crop Science	81	194-200	2012		
39999	0	Furuya N., Taura S., Goto T., Thuy B.T., Ton P.H., Tsuchiya K., Yoshimura A.	Diversity in virulence of Xanthomonas oryzae pv. Oryzae from Northern Vietnam	Jpn. Agric. Res. Q.	46	329-338	2012		
40000	0	Sui J.M., Guo B.T., Wang J.S., Qiao L.X., Zhou Y., Zhang H.G., Gu M.H., Liang G.H.	A New GA-Insensitive Semidwarf Mutant of Rice (Oryza sativa L.) with a Missense Mutation in the SDG Gene	Plant Molecular Biology Reporter	30	187-194	2012		
40001	0	Yamauchi Y., Hirai Y., Saruta K., Yamakawa T., Inoue E., Okayasu T., Mitsuoka M.	Evaluation of a multiple linear regression model for the prediction of panicle number in rice	Journal of the Faculty of Agriculture, Kyushu University	57	421-426	2012		
40002	0	Cheng M.J., Wu M.D., Su Y.S., Chen I.S., Yuan G.F.	Anti-inflammatory compounds from Monascus pilosus-fermented rice	Phytochem Lett	5	63-67	2012		
40003	23573038	Sandhu N., Jain S., Battan K.R., Jain R.K.	Aerobic rice genotypes displayed greater adaptation to water-limited cultivation and tolerance to polyethyleneglycol-6000 induced stress	Physiology and Molecular Biology of Plants	18	33-43	2012		
40004	0	Koga H., Dohi K., Nishiuchi T., Kato T., Takahara H., Mori M., Komatsu S.	Proteomic analysis of susceptible rice plants expressing the whole plant-specific resistance against Magnaporthe oryzae: Involvement of a thaumatin-like protein	Physiol. Mol. Plant Pathol.	77	60-66	2012		
40005	0	Chen M., Wei X., Shao G., Tang S., Luo J., Hu P.	Fragrance of the rice grain achieved via artificial microRNA-induced down-regulation of OsBADH2	Plant Breeding	131	584-590	2012		
40006	0	Masuda Y., Noguchi T., Takahashi T., Iguchi A., Osawa R.	DGGE and PFGE analysis of lactic acid bacterial succession during Kimoto making	Seibutsu-kogaku Kaishi	90	684-690	2012		
40007	22907502	Xiao W.	Specialized technologies for epigenetics in plants	Methods in Molecular Biology	925	231-247	2012		
40008	0	Malek M.R., Yadi R., Ahmadi I.	Effects of conduct to weeds and row spacing on weeds traits and agronomical parameters of rice (Oryza sativa L.) at the north of Iran	Life Science Journal	9	2347-2352	2012		
40009	0	Shi B.H., Zhang J.H., Zheng Y.M., Liu Y.Q., Vera Cruz C.M., Zheng T.Q., Zhao M.F.	Identification of a new resistance gene Pi-Da(t) from Dacca6 against rice blast fungus (Magnaporthe oryzae) in Jin23B background	Molecular Breeding	30	1089-1096	2012		
40010	0	Sousa C.P., Bacarin M.A., Pinto J.J.O.	Growth of residual herbicide (Imazethapyr+Imazapic) bio-indicators sown in rotation with clearfieldR rice [Crescimento de especies bioindicadoras do residual do herbicida (Imazethapyr+Imazapic), semeadas em rotacao com arroz clearfieldR]	Planta Daninha	30	105-111	2012		
40011	0	Mutuku J.M., Nose A.	High activities and mRNA expression of pyrophosphate-fructose-6-phosphate-phosphotransferase and 6-phosphofructokinase are induced as a response to Rhizoctonia solani infection in rice leaf sheaths	Physiol. Mol. Plant Pathol.	77	41-51	2012		
40012	0	Zhang Y.X., Wang Q., Jiang L., Wang B.X., Liu L.L., Shen Y.Y., Cheng X.N., Wan J.M.	Detection and fine mapping of two quantitative trait loci for partial resistance to stripe virus in rice (Oryza sativa L.)	Molecular Breeding	30	1379-1391	2012		
40013	0	Ji S.D., Yuan P.R., Xiao L., Lee H.S., Ahn S.N.	Characterization of quantitative trait loci for number of primary branches in near-isogenic lines from a cross between the Oryza sativa cultivar 'Hwayeongbyeo' and the wild relative Oryza rufipogon	Plant Breeding	131	48-53	2012		
40014	0	Dong M.H., Chen P.F., Xie Y.L., Qiao Z.Y., Yang J.C.	Variations in Carbohydrate and Protein Accumulation among Spikelets at Different Positions Within a Panicle During Rice Grain Filling	Rice Science	19	223-232	2012		
40015	0	Hamaoka N., Araki T., Kumagai E., Hanh T.T., Van Cuong P., Ueno O.	Photosynthetic traits of upper three leaves in the vietnamese F 1 hybrid rice vietlai 45 and its parents during the ripening period	Journal of the Faculty of Agriculture, Kyushu University	57	27-33	2012		
40016	22012076	del Delgado Sandoval S.C., Juarez M.J.A., Simpson J.	Agave tequilana MADS genes show novel expression patterns in meristems, developing bulbils and floral organs	Sex. Plant Reprod.	25	11-26	2012		
40017	0	De Setta N., Metcalfe C.J., Cruz G.M.Q., Ochoa E.A., Van Sluys M.A.	Noise or symphony: Comparative evolutionary analysis of sugarcane transposable elements with other grasses	Top Curr Genet	24	169-192	2012		
40018	0	Shen G.M., Zhu C., Du Q.Z., Shangguan L.N.	Ascorbate-Glutathione Cycle Alteration in Cadmium Sensitive Rice mutant cadB-1	Rice Science	19	185-192	2012		
40019	22539437	Mirzaei M., Pascovici D., Atwell B.J., Haynes P.A.	Differential regulation of aquaporins, small GTPases and V-ATPases proteins in rice leaves subjected to drought stress and recovery	Proteomics	12	864-877	2012		
40020	0	Ye C., Argayoso M.A., Redona E.D., Sierra .S.N., Laza M.A., Dilla C.J., Mo Y., Thomson .M.J., Chin J., Delavina .C.B., Diaz .G.Q., Hernandez .J.E.	Mapping QTL for heat tolerance at flowering stage in rice using SNP markers	Plant Breeding	131	33-41	2012		
40021	0	BAI Y.L., ZHANG X.M., FENG H., JI H.L., HUANG Y., PENG Y.L.	Virulence Types of Magnaporthe oryzae to Hybrid Rice in Sichuan, China	Rice Science	19	320-326	2012		
40022	23093940	Noton S.L., Deflube L.R., Tremaglio C.Z., Fearns R.	The Respiratory Syncytial Virus Polymerase Has Multiple RNA Synthesis Activities at the Promoter	PLoS Pathog.	8	e1002980	2012		
40023	22728068	Vargas J.E., Salton G., Sodre de Castro Laino A., Pires T.D., Bonamino M., Lenz G., Delgado-Canedo A.	pLR: A lentiviral backbone series to stable transduction of bicistronic genes and exchange of promoters	Plasmid	68	179-185	2012		
40024	0	Zhang D., Wu J., Zhang Y., Shi C.	Phenotypic and Candidate Gene Analysis of a New floury endosperm Mutant (osagpl2-3) in Rice	Plant Molecular Biology Reporter	30	1303-1312	2012	AGPL2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
40025	0	Hackauf B., Korzun V., Wortmann H., Wilde P., Wehling P.	Development of conserved ortholog set markers linked to the restorer gene Rfp1 in rye	Molecular Breeding	30	1507-1518	2012		
40026	0	Satish K., Madhusudhana R., Padmaja P.G., Seetharama N., Patil J.V.	Development, genetic mapping of candidate gene-based markers and their significant association with the shoot fly resistance quantitative trait loci in sorghum [Sorghum bicolor (L.) Moench]	Molecular Breeding	30	1573-1591	2012		
40027	0	Li S., Liu M., Wang S., Deng Q., Zheng A., Liu H., Wang L., Zhu J., Li P.	Fine mapping of a dominant minute-grain gene, Mi3, in rice	Molecular Breeding	30	1045-1051	2012		
40029	0	Ashkani S., Rafii M.Y., Rusli I., Sariah M., Abdullah S.N.A., Rahim H.A., Latif M.A.	SSRs for Marker-Assisted Selection for Blast Resistance in Rice (Oryza sativa L.)	Plant Molecular Biology Reporter	30	79-86	2012		
40030	24082492	Ghosh N., Das S.P., Mandal C., Gupta S., Das K., Dey N., Adak M.K.	Variations of antioxidative responses in two rice cultivars with polyamine treatment under salinity stress	Physiology and Molecular Biology of Plants	18	301-313	2012		
40031	0	Hussain A.J., Ali J., Siddiq E.A., Gupta V.S., Reddy U.K., Ranjekar P.K.	Mapping of tms8 gene for temperature-sensitive genic male sterility (TGMS) in rice (Oryza sativa L.)	Plant Breeding	131	42-47	2012		
40032	21979254	Zheng Y., Tang Y., Fu Y., He J., Wang X., Hong T.	Purification of human respiratory syncytial virus fusion glycoprotein	Protein Expr. Purif.	81	115-118	2012		
40033	0	Pozniak C.J., Clarke J.M., Clarke F.R.	Potential for detection of marker-trait associations in durum wheat using unbalanced, historical phenotypic datasets	Molecular Breeding	30	1537-1550	2012		
40034	0	Zhou X.J., Ling N., Zhang L., Li Y.H., Ya H.Y.	Expression changes of genes related to chromosome remodeling caused by implantation with low-energy N+ beam in rice	Life Science Journal	9	148-153	2012		
40035	0	Ashikawa I.	Regions outside the leucine-rich repeat domain determine the distinct resistance specificities of the rice blast resistance genes Pik and Pik-m	Molecular Breeding	30	1531-1535	2012		
40036	0	Wang P., Zhou G., Cui K., Li Z., Yu S.	Clustered QTL for source leaf size and yield traits in rice (Oryza sativa L.)	Molecular Breeding	29	99-113	2012		
40037	0	Fu J., Yang J.C.	Research Advances in High-Yielding Cultivation and Physiology of Super Rice	Rice Science	19	177-184	2012		
40038	0	HE X.C., XU H.X., ZHENG X.S., YANG Y.J., GAO G.C., PAN J.H., LU Z.X.	Ecological Fitness of Non-vector Planthopper Sogatella furcifera on Rice Plants Infected with Rice Black Streaked Dwarf Virus	Rice Science	19	335-338	2012		
40039	0	Gawronski P., Schnurbusch T.	High-density mapping of the earliness per se-3A m (Eps-3A m) locus in diploid einkorn wheat and its relation to the syntenic regions in rice and Brachypodium distachyon L.	Molecular Breeding	30	1097-1108	2012		
40040	22927822	Patkar R.N., Xue Y.K., Shui G., Wenk M.R., Naqvi N.I.	Abc3-Mediated Efflux of an Endogenous Digoxin-like Steroidal Glycoside by Magnaporthe oryzae Is Necessary for Host Invasion during blast disease	PLoS Pathog.	8	e1002888	2012		
40041	0	Zhang Z., Li M., Fang Y., Liu F., Lu Y., Meng Q., Peng J., Yi X., Gu M., Yan C.	Diversification of the Waxy Gene is Closely Related to Variations in Rice Eating and Cooking Quality	Plant Molecular Biology Reporter	30	462-469	2012		
40042	0	Cho S.C., Chao Y.Y., Hong C.Y., Kao C.H.	The role of hydrogen peroxide in cadmium-inhibited root growth of rice seedlings	Plant Growth Regul.	66	27-35	2012		
40043	0	Sarkar R.K.	Seed Priming Improves Agronomic Trait Performance under Flooding and Non-flooding Conditions in Rice with QTL Sub1	Rice Science	19	286-294	2012		
40044	0	Luo Y., Sangha J.S., Wang S., Li Z., Yang J., Yin Z.	Marker-assisted breeding of Xa4, Xa21 and Xa27 in the restorer lines of hybrid rice for broad-spectrum and enhanced disease resistance to bacterial blight	Molecular Breeding	30	1601-1610	2012		
40045	22239253	Fu C., Sunkar R., Zhou C., Shen H., Zhang J.Y., Matts J., Wolf J., Mann D.G.J., Stewart C.N., Tang Y., Wang Z.Y.	Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production	Plant Biotechnol. J.	10	443-452	2012		
40046	0	Xie F., Guo L., Ren G., Hu P., Wang F., Xu J., Li X., Qiu F., Dela Paz M.A.	Genetic diversity and structure of indica rice varieties from two heterotic pools of southern China and IRRI	Plant Genetic Resources: Characterisation and Utilisation	10	186-193	2012		
40047	0	Akasaka N., Sakoda H., Fujiwara S.	Branched-chain amino acid production by an acetic acid bacterium Gluconacetobacter europaeus	Seibutsu-kogaku Kaishi	90	374-380	2012		
40048	0	Li L., Lin Q., Liu S., Liu X., Wang W., Hang N.T., Liu F., Zhao Z., Jiang L., Wan J.	Identification of quantitative trait loci for seed storability in rice (Oryza sativa L.)	Plant Breeding	131	739-743	2012		
40049	0	Abdel-Hakim A.A., Abdel-Salam Sabbah I., Metwally M.S., El Begawy S., Elshafie E.S.	Mechanical properties and morphology studies of nanocomposites based on RSF/nanoclay modified /HDPE nanocomposites	Life Science Journal	9	134-142	2012		
40050	0	Anvari M.	Optimization of lipase production from rice straw using response surface methodology by Aspergillus niger	Journal of Pure and Applied Microbiology	6	789-796	2012		
40051	0	Jairath M., Khanna P.K., Sharma N.R., Soni G.	Growth and lignocellulolytic enzyme profile of different strains of Lentinus edode with different carbon sources	Journal of Pure and Applied Microbiology	66	1671-1676	2012		
40052	0	Ding L., Li S.C., Wang S.Q., Deng Q.M., Zhang J., Zheng A.P., Wang L.X., Chu M.G., Zhu J., Li P.	Phenotypic characterization and genetic mapping of a new gene required for male and female gametophyte development in rice	Molecular Breeding	29	1-12	2012		
40053	0	FU G.F., SONG J., XIONG J., LIAO X.Y., Zhang X.F., WANG X., LE M.K., TAO L.X.	Thermal Resistance of Common Rice Maintainer and Restorer Lines to High Temperature During Flowering and Early Grain Filling Stages	Rice Science	19	309-314	2012		
40054	0	Dixit S., Mallikarjuna Swamy B.P., Vikram P., Bernier J., Sta Cruz M.T., Amante M., Atri D., Kumar A.	Increased drought tolerance and wider adaptability of qDTY12.1 conferred by its interaction with qDTY2.3 and qDTY3.2	Molecular Breeding	30	1767-1779	2012		
40055	22675274	Blondot M.L., Dubosclard V., Fix J., Lassoued S., Aumont-Nicaise M., Bontems F., Eleouet J.F., Sizun C.	Structure and functional analysis of the RNA- and viral phosphoprotein-binding domain of respiratory syncytial virus M2-1 protein	PLoS Pathog.	8	e1002734	2012		
40056	21933120	Hirano K., Aya K., Matsuoka M., Ueguchi-Tanaka M.	Molecular determinants that convert hormone sensitive lipase into gibberellin receptor	Protein Pept. Lett.	19	180-185	2012		
40057	0	Peyman S.	Diallel analysis to study genetic parameters of rice salinity tolerance traits at germination stage	Sabrao Journal of Breeding and Genetics	44	42-57	2012		
40058	0	Souphonphacdy D., Yabe M., Sato G.	Impact of rubber concession on rural livelihood in champasack province, Lao PDR	Journal of the Faculty of Agriculture, Kyushu University	57	339-344	2012		
40059	0	KIM S.I., KIM D.M., TAI T.H.	Evaluation of Rice Seedling Tolerance to Constant and Intermittent Low Temperature Stress	Rice Science	19	295-308	2012		
40060	0	Redillas M.C.F.R., Park S.H., Lee J.W., Kim Y.S., Jeong J.S., Jung H., Bang S.W., Hahn T.R., Kim J.K.	Accumulation of trehalose increases soluble sugar contents in rice plants conferring tolerance to drought and SalT stress	Plant Biotechnol Rep	6	89-96	2012		
40061	22927818	Fujikawa T., Sakaguchi A., Nishizawa Y., Kouzai Y., Minami E., Yano S., Koga H., Meshi T., Nishimura M.	Surface ????-1,3-Glucan Facilitates Fungal Stealth Infection by Interfering with Innate Immunity in Plants	PLoS Pathog.	8	e1002882	2012		
40062	0	Wickneswari R., Bhuiyan M.A.R., Kalluvettankuzhy S.K., Lim L.S., Thomson M.J., Narimah M.K., Abdullah M.Z.	Identification and Validation of Quantitative Trait Loci for Agronomic Traits in Advanced Backcross Breeding Lines Derived from Oryza rufipogon ???? Oryza sativa Cultivar MR219	Plant Molecular Biology Reporter	30	929-939	2012		
40063	0	Lu S.J., Wei H., Wang Y., Wang H.M., Yang R.F., Zhang X.B., Tu J.M.	Overexpression of a Transcription Factor OsMADS15 Modifies Plant Architecture and Flowering Time in Rice (Oryza sativa L.)	Plant Molecular Biology Reporter	30	1461-1469	2012		
40064	22312005	Ladwig F., Stahl M., Ludewig U., Hirner A.A., Hammes U.Z., Stadler R., Harter K., Koch W.	Siliques Are Red1 from Arabidopsis acts as a bidirectional amino acid transporter that is crucial for the amino acid homeostasis of siliques	Plant Physiol.	158	1643-1655	2012		
40065	0	Kim Y.M., Lee J.Y., Lee T., Lee Y.H., Kim S.H., Kang S.H., Yoon U.H., Ha S.H., Lim S.H.	The suppression of the glutelin storage protein gene in transgenic rice seeds results in a higher yield of recombinant protein	Plant Biotechnol Rep	6	347-353	2012		
40066	0	Wang C.P., Lei K.R., Li Z.G., Lin Q., Wu H.	Effects of chilling stress on chlorophyll fluorescence characteristics of seedling leaves with different leaf ages of Oryza sativa	Journal of Plant Resources and Environment	21	38-43	2012		
40067	0	Tan Y., Xie H., Li N., Li S., Zhu Y.	Molecular characterization of latent fertility restorer loci for Honglian cytoplasmic male sterility in Oryza species	Molecular Breeding	30	1699-1706	2012		
40068	0	Castell-Miller C.V., Samac D.A.	Population genetic structure, gene flow and recombination of Cochliobolus miyabeanus on cultivated wildrice (Zizania palustris)	Plant Pathol.	61	903-914	2012		
40069	0	Afroz A., Qureshi A., Zahur M., Rashid U., Rashid H.	Transgenic Lines of Oryza Sativa (Basmati 2000) Expressing Xa21 Demonstrate Enhanced Resistance to Bacterial Blight	Plant Molecular Biology Reporter	30	204-213	2012		
40070	0	Hakeem K.R., Chandna R., Ahmad A., Iqbal M.	Physiological and Molecular Analysis of Applied Nitrogen in Rice Genotypes	Rice Science	19	213-222	2012		
40071	0	Dhadi S.R., Deshpande A., Ramakrishna W.	A Novel Non-wounding Transient Expression Assay for Cereals Mediated by Agrobacterium tumefaciens	Plant Molecular Biology Reporter	30	36-45	2012		
40072	22453776	Kim J., Lim C.J., Lee B.W., Choi J.P., Oh S.K., Ahmad R., Kwon S.Y., Ahn J., Hur C.G.	A genome-wide comparison of NB-LRR type of resistance gene analogs (RGA) in the plant Kingdom	Mol. Cells	33	385-392	2012		
40073	0	Park S.Y., Lee S.M., Lee J.H., Ko H.S., Kweon S.J., Suh S.C., Shin K.S., Kim J.K.	Compositional comparative analysis between insect-resistant rice (Oryza sativa L.) with a synthetic cry1Ac gene and its non-transgenic counterpart	Plant Biotechnol Rep	6	29-37	2012		
40074	0	Bhattacharjee S.	An inductive pulse of hydrogen peroxide pretreatment restores redox-homeostasis and oxidative membrane damage under extremes of temperature in two rice cultivars	Plant Growth Regul.	68	395-410	2012		
40075	0	Helmy H., El-Mehiry H.F.	Effect of Egyptian bread prepared by different types of flour on diabetic rats and its glycemic index in diabetic patients	Life Science Journal	9	2264-2272	2012		
40076	0	Simonetti E., Alba E., Delibes A.	Chromosomal location of four genes encoding class III peroxidases in wheat [Localizacion cromosomica de cuatro genes de peroxidasa de clase III en trigo]	Phyton (B Aires)	81	139-142	2012		
40077	0	Mou S.L., Liu Z.Q., Lai Y., Cai H.Y., He S.L.	Sequence analysis of Xa21 gene promoter in rice (Oryza sativa 'Nipponbare') and its expression characteristics under different conditions	Journal of Plant Resources and Environment	21	10-15	2012		
40078	21818852	Shu L., Lou Q., Ma C., Ding W., Zhou J., Wu J., Feng F., Lu X., Luo L., Xu G., Mei H.	Genetic, proteomic and metabolic analysis of the regulation of energy storage in rice seedlings in response to drought	Proteomics	11	4122-4138	2011		
40079	0	HU W.D., Zhang H., JIANG J.H., WANG Y.Y., SUN D.Y., WANG X.S., LIANG K., HONG D.L.	Genetic Analysis and QTL Mapping of Large flag leaf angle Trait in Japonica Rice	Rice Science	19	277-285	2012		
40080	0	She K.C., Yaeshima M., Koumoto T., Ohnuma M., Hiromasa T., Hirai M., Matsunaga T., Tashiro R., Sasaki T., Kusano H., Shimada H.	High-temperature stress susceptibility of representative japonica rice cultivars derived from Norin-22: Inadequate ATP supply during seed development may lead to severe damage	Plant Biotechnology	29	465-471	2012		
40081	0	Dong S., Zheng G., Yu X., Fu C.	Biological control of golden apple snail, Pomacea canaliculata by Chinese soft-shelled turtle, Pelodiscus sinensis in the wild rice, Zizania latifolia field	Sci Agric	69	142-146	2012		
40082	0	Yu T., Pang H., Ren T., Li Y., Tang H., Yang G., Xiao X., Tang W., Chen F.	Effects of winter crops on enzyme activity and morphological characteristics of root in subsequent rice crops	Shengtai Xuebao/ Acta Ecologica Sinica	32	7894-7904	2012		
40083	24279910	Li J., Yuan Y., Lu Z., Yang L., Gao R., Lu J., Li J., Xiong G.	Glabrous Rice 1, encoding a homeodomain protein, regulates trichome development in rice	Rice (N Y)	5	32	2012		
40084	0	Fukuda A., Shimizu H., Shiratsuchi H., Yamaguchi H., Ohdaira Y., Mochida H.	Complementary genes that cause black ripening hulls in F 1 plants of crosses between indica and japonica rice cultivars	Plant Prod. Sci.	15	270-273	2012		
40085	24280025	Yang C., Zhang T., Wang H., Zhao N., Liu B.	Heritable alteration in salt-tolerance in rice induced by introgression from wild rice (Zizania latifolia)	Rice (N Y)	5	36	2012		
40086	0	Li X., Ren C.G.	Effects on photosynthetic and fluorescence characteristics under treatments of ABA, BA or DPI in the transgenic rice with over-expression C4 pepc gene	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	549-556	2012		
40087	0	Jiang N., Li Z., Wu J., Wang Y., Wu L., Wang S., Wang D., Wen T., Liang Y., Sun P., Liu J., Dai L., Wang Z., Wang C., Luo M., Liu X., Wang G.L.	Molecular mapping of the Pi2/9 allelic gene Pi2-2 conferring broad-spectrum resistance to Magnaporthe oryzae in the rice cultivar Jefferson	Rice (N Y)	5	29	2012		
40088	0	Li S., Xie K., Li W., Zou T., Ren Y., Wang S., Deng Q., Zheng A., Zhu J., Liu H., Wang L., Ai P., Gao F., Huang B., Cao X., Li P.	Re-sequencing and genetic variation identification of a rice line with ideal plant architecture	Rice (N Y)	5	18	2012		
40089	22844430	Ni K., Li S., Xia Q., Zang N., Deng Y., Xie X., Luo Z., Luo Y., Wang L., Fu Z., Liu E.	Pharyngeal microflora disruption by antibiotics promotes airway hyperresponsiveness after respiratory syncytial virus infection	PLoS ONE	7	e41104	2012		
40090	0	Xiong J., Lin H., Li Z., Fang C., Han Q., Lin W.	Analysis of rhizosphere microbial community structure of weak and strong allelopathic rice varieties under dry paddy field	Shengtai Xuebao/ Acta Ecologica Sinica	32	6100-6109	2012		
40091	24575232	Devi S., Mishra M.K., Elliott M.	Regeneration of transgenic rice with bacterial ipt gene driven by senescence specific (SAG12) promoter by particle bombardment	Tropical Life Sciences Research	23	39-48	2012		
40092	0	Chen W., Cai K., Chen J.	Effects of silicon application and drought stress on photosynthetic traits and mineral nutrient absorption of rice leaves	Shengtai Xuebao/ Acta Ecologica Sinica	32	2620-2628	2012		
40093	0	Rawat N., Neeraja C.N., Nair S., Bentur J.S.	Differential gene expression in gall midge susceptible rice genotypes revealed by suppressive subtraction hybridization (SSH) cDNA libraries and microarray analysis	Rice (N Y)	5	8	2012		
40094	0	Debnath S., Satya P., Saha B.C.	Differential response of different stress related biochemicals and reactive oxygen species scavenging enzymes in rice-Xanthomonas interaction	Research on Crops	13	388-391	2012		
40095	0	Zhang J., Jiang C., Hao Q., Wu Y., Xie D.	Effect of tillage systems on light fraction carbon in a purple paddy soil	Shengtai Xuebao/ Acta Ecologica Sinica	32	4379-4387	2012		
40096	0	Huang M., Liu D.Y., Sun X., Chen K.J.	Determining the optimal drying conditions for GBR with specific reference to quality, drying rate, and energy consumption	Transactions of the ASABE	55	1829-1836	2012		
40097	24279714	Nigorikawa M., Watanabe A., Furukawa K., Sonoki T., Ito Y.	Enhanced saccharification of rice straw by overexpression of rice exo-glucanase	Rice (N Y)	5	14	2012		
40098	24280046	Tripathi A.K., Pareek A., Sopory S.K., Singla-Pareek S.L.	Narrowing down the targets for yield improvement in rice under normal and abiotic stress conditions via expression profiling of yield-related genes	Rice (N Y)	5	37	2012		
40099	0	Wang W., Liu X., Tian Y., Yao X., Cao W., Zhu Y.	Effects of different soil water treatments on photosynthetic characteristics and grain yield in rice	Shengtai Xuebao/ Acta Ecologica Sinica	32	7053-7060	2012		
40101	0	Liu A., Xu S., Cai X., Lu C., Peng P.	Effects of microchemical substances in anaerobic fermented liquid from rice straw and cyanobacteria on Fusaruim oxysporum f. sp. niveum growth	Shengtai Xuebao/ Acta Ecologica Sinica	32	4585-4592	2012		
40102	0	Miyake C., Suzuki Y., Yamamoto H., Amako K., Makino A.	O2-enhanced induction of photosynthesis in rice leaves: the Mehler-ascorbate peroxidase (MAP) pathway drives cyclic electron flow within PSII and cyclic electron flow around PSI	Soil Sci. Plant Nutr.	58	718-727	2012		
40103	23285210	Chowdhary A., Kathuria S., Xu J., Sharma C., Sundar G., Singh P.K., Gaur S.N., Hagen F., Klaassen C.H., Meis J.F.	Clonal Expansion and Emergence of Environmental Multiple-Triazole-Resistant Aspergillus fumigatus Strains Carrying the TR34/L98H Mutations in the cyp51A Gene in India	PLoS ONE	7	e52871	2012		
40104	0	Angeles-Shim R.B., Asano K., Takashi T., Shim J., Kuroha T., Ayano M., Ashikari M.	A WUSCHEL-related homeobox 3B gene, depilous (dep), confers glabrousness of rice leaves and glumes	Rice (N Y)	5	28	2012		
40105	0	Du S.Y., Wang D.Z., Wu S., Wang H., Wang S.H.	Changes of antioxidant enzyme activities in anthers and leaves from three types of rice male sterile lines	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	1179-1186	2012		
40106	0	Niu X.D., Li G.R., Kang Z.H., Huang J.L., Wang G.X.	Photosynthetic characteristics and antioxidant enzyme system in high-chlorophyll rice Gc mutant	Russian Journal of Plant Physiology	59	691-695	2012		
40107	0	Lou Y., Zhou W.	Effect of elevated ultraviolet-B (UV-B) radiation on CH4 emission in herbicide resistant transgenic rice from a paddy soil	Shengtai Xuebao/ Acta Ecologica Sinica	32	4731-4736	2012		
40108	0	Cai M., Wang N., Wang Z., Wang F., Zhu M., Huang W.	The role of root border cells in protecting buckwheat root apices from aluminum toxicity and their effect on polysaccharide contents of root tip cell walls	Shengtai Xuebao/ Acta Ecologica Sinica	32	915-922	2012		
40109	0	Watanabe S., Nakamura K., Ryu C.S., Iida M., Kawashima S.	Effects of different application timings of methane fermentation digested liquid to paddy plots on soil nitrogen and rice yield	Soil Sci. Plant Nutr.	58	224-237	2012		
40110	0	Kole P.C., Chakraborty N.R.	Assessment of genetic divergence in induced mutants of short grain aromatic non-basmati rice (Oryza sativa L.)	Tropical Agriculture	89	211-215	2012		
40111	23300622	Liu T., Zhou Y., Chen L., Chen W., Liu L., Shen X., Zhang W., Zhang J., Yang Q.	Structural Insights into Cellulolytic and Chitinolytic Enzymes Revealing Crucial Residues of Insect ??-N-acetyl-D-hexosaminidase	PLoS ONE	7	e52225	2012		
40112	0	Nozoe T., Uchino A., Okawa S., Yoshida S., Kanda Y., Nakayama Y.	Suppressive effect of rice bran incorporation in paddy soil on germination of Monochoria vaginalis and its relationship with electric conductivity	Soil Sci. Plant Nutr.	58	200-205	2012		
40113	0	Pu X.M., Zhou J.N., Lin B.R., Shen H.F.	First report of bacterial foot rot of rice caused by a Dickeya zeae in China	Plant Dis.	96	1818	2012		
40114	0	Bhattacharyya R., Tuti M.D., Bisht J.K., Bhatt J.C., Gupta H.S.	Conservation tillage and fertilization impact on soil aggregation and carbon pools in the Indian himalayas under an irrigated rice-wheat rotation	Soil Sci	177	218-228	2012		
40115	22389685	Yu X., Lu R., Wang Z., Zhu N., Wang W., Julian D., Chris B., Lv J., Tan W.	Etiology and clinical characterization of respiratory virus infections in adult patients attending an emergency department in beijing	PLoS ONE	7	e32174	2012		
40116	0	Kole P.C., Chakraborty N.R., Mallick R.B.	Evaluation of gamma ray induced mutants of aromatic rice (Oryza sativa L.)	Tropical Agriculture	89	205-210	2012		
40117	0	Li J.Q., Shahid M.Q., Feng J.H., Liu X.D., Zhao X.J., Lu Y.G.	Identification of neutral alleles at pollen sterility gene loci of cultivated rice (Oryza sativa L.) from wild rice (O. rufipogon Griff.)	Plant Systematics and Evolution	298	33-42	2012		
40118	0	An H., Liu M., Wang Y., Yan Y.	Effects of different rice-crab production modes on soil labile organic carbon and enzyme activities	Shengtai Xuebao/ Acta Ecologica Sinica	32	4753-4761	2012		
40119	0	Kumar A., Kumar N.	Crop residue management for sustainable crop production and soil health in rice-wheat cropping system	Research on Crops	13	412-417	2012		
40120	0	Luo Y., Chen S.N., Wu W.T., Lo G.L., Jiang C.M., Cheng Z.Q.	Gene chip of Oryza granulata responsing to Xanthomonas oryzae pv. oryzae (Xoo)	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	821-827	2012		
40121	0	Kundu R., Brahmachari K.	Nutrient management in rice-lathyrus (Paira)-greengram cropping system under coastal saline zone of West Bengal	Research on Crops	13	418-425	2012		
40122	0	Raman A., Verulkar S.B., Mandal N.P., Variar M., Shukla V.D., Dwivedi J.L., Singh B.N., Singh O.N., Swain P., Mall A.K., Robin S., Chandrababu R., Jain A., Ram T., Hittalmani S., Haefele S., Piepho H.P., Kumar A.	Drought yield index to select high yielding rice lines under different drought stress severities	Rice (N Y)	5	31	2012		
40123	0	Zheng J., Zhang Y., Chen L., Wang Z.	Nitrous oxide emissions affected by tillage measures in winter wheat under a rice-wheat rotation system	Shengtai Xuebao/ Acta Ecologica Sinica	32	6138-6146	2012		
40124	0	Fukuoka M., Yoshimoto M., Hasegawa T.	Varietal range in transpiration conductance of flowering rice panicle and its impact on panicle temperature	Plant Prod. Sci.	15	258-264	2012		
40125	22952830	Song J., Shi L., Li D., Sun Y., Niu Y., Chen Z., Luo H., Pang X., Sun Z., Liu C., Lv A., Deng Y., Larson-Rabin Z., Wilkinson M., Chen S.	Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA	PLoS ONE	7	e43971	2012		
40126	0	Huang M., Xia B., Zou Y., Jiang P., Shi W., Hongthong P., Xie X.	Improvement in super hybrid rice: A comparative study between super hybrid and inbred varieties	Research on Crops	13	1-10	2012		
40127	0	Duan C.X., Yu J.J., Li W.C., Bai J.Y., Chen M.G., Zhu Z.D., Wang X.M.	Effect of small brown planthopper stress on defense enzyme activities and cell ultrastructure in rice leaf	Zhiwu Shengli Xuebao/Plant Physiology Journal	48	971-978	2012		
40128	0	Wang H., Zhu Y., Ma M., Li W., Gu K., Cao W., Tian Y.	Coupling remotely sensed information with a rice growth model by combining updating and assimilation strategies	Shengtai Xuebao/ Acta Ecologica Sinica	32	4505-4515	2012		
40129	0	Rahman M.A., Rahman M.M., Maki T., Hasegawa H.	The significance of biodegradable methylglycinediacetic acid (MGDA) for iron and arsenic bioavailability and uptake in rice plant	Soil Sci. Plant Nutr.	58	627-636	2012		
40130	0	Wang C., Cui L., Mao X., Wen Y.	Comparative studies on the farmers'willingness to accept eco-compensation in wetlands nature reserve	Shengtai Xuebao/ Acta Ecologica Sinica	32	5345-5354	2012		
40131	0	Sriprachote A., Kanyawongha P., Pantuwan G., Ochiai K., Matoh T.	Evaluation of Thai rice cultivars with low-grain cadmium	Soil Sci. Plant Nutr.	58	568-572	2012		
40132	0	Zhao Q., Dai S.	Salt-responsive mechanisms in the plant root revealed by proteomic analyses	Shengtai Xuebao/ Acta Ecologica Sinica	32	274-283	2012		
40133	22984581	Xu L., He X., Zhang D.-m., Feng F.-s., Wang Z., Guan L.-l., Wu J.-h., Zhou R., Zheng B.-j., Yuen K.-y., Li M.-f., Cao K.-y.	Surveillance and Genome Analysis of Human Bocavirus in Patients with Respiratory Infection in Guangzhou, China	PLoS ONE	7	e44876	2012		
40134	23029150	Lee Y.L., Peng Q., Fong S.W., Chen A.C.H., Lee K.F., Ng E.H.Y., Nagy A., Yeung W.S.B.	sirtuin 1 Facilitates Generation of Induced Pluripotent Stem Cells from Mouse Embryonic Fibroblasts through the miR-34a and p53 Pathways	PLoS ONE	7	e45633	2012		
40135	0	Zhang Y., Wang Y.P., Liu P., Song J.M., Xu G.D., Zheng G.H.	Effect of toxic Fe 2+ levels on the biological characteristics of rice root border cells	Russian Journal of Plant Physiology	59	766-771	2012		
40136	0	Ureshi A., Matuda S., Ohashi E., Onishi K., Takamure I., Kato K.	The rice RCN1/OsABCG5 mutation is associated with root development in response to nutrient shortage	Plant Root	6	28-35	2012		
40137	23167196	Zhang Y., Wu J., He C.	Uptake of exogenous sugars and responses by rice root of young wild-type and OsPK1 mutant seedlings	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	28	847-854	2012		
40138	0	Thirumala M., Vishnuvardhan Reddy S.	Production of poly-(3-hydroxybutyrate) by Bacillus sp. 112A, utilizing some waste starchy materials	Journal of Pure and Applied Microbiology	6	497-499	2012		
40139	0	Das A., Angayarkanni J., Bhattacharya S., Palaniswamy M.	Quantification of aflatoxin B1 produced by Aspergillus flavus MTCC 2798 in rice straw under solid-state fermentation	Journal of Pure and Applied Microbiology	66	1663-1669	2012		
40140	0	Tyagi W., Rai M., Dohling A.	Haplotype analysis for Pup1 locus in rice genotypes of north eastern and eastern india to identify suitable donors tolerant to low phosphorus	Sabrao Journal of Breeding and Genetics	44	398-405	2012		
40141	0	Velho G.F., Crusciol C.A.C., Velini E.D., Castro G.S.A., Borghi E.	Weed competition between brachiaria plantaginea and rice culture, CV. 'Primavera' [Interferencia de brachiaria plantaginea com a cultura do arroz, CV. Primavera]	Planta Daninha	30	17-26	2012		
40142	0	LANG Y.Z., YANG X.D., WANG M.E., ZHU Q.S.	Effects of Lodging at Different Filling Stages on Rice Yield and Grain Quality	Rice Science	19	315-319	2012		
40143	0	SHANG H.X., YE S.H., DENG X.M., Zhou Y., XIU F.L., JI X.J., LIU J.Y., CHEN P.P., JIN Q.S., Zhang X.M.	Identification and Fine Mapping of heading date Related Mutant Gene in Rice	Rice Science	19	269-276	2012		
40144	0	Yazawa K., Jiang C.J., Kojima M., Sakakibara H., Takatsuji H.	Reduction of abscisic acid levels or inhibition of abscisic acid signaling in rice during the early phase of Magnaporthe oryzae infection decreases its susceptibility to the fungus	Physiol. Mol. Plant Pathol.	78	1-7	2012		
40145	0	Rasyad A., Manurung G.M.E., van Sanford D.A.	Genotype x environment interaction and stability of yield components among rice genotypes in Riau province, Indonesia	Sabrao Journal of Breeding and Genetics	44	102-111	2012		
40146	0	Wang F., Wang R., Jing W., Zhang W.	Quantitative dissection of lipid degradation in rice seeds during accelerated aging	Plant Growth Regul.	66	49-58	2012		
40147	0	Chao Y.Y., Chou T.S., Kao C.H.	Involvement of abscisic acid and hydrogen peroxide in regulating the activities of antioxidant enzymes in leaves of rice seedlings under magnesium deficiency	Plant Growth Regul.	66	1-8	2012		
40148	0	Tsaftaris A.S., Pasentsis K., Madesis P., Argiriou A.	Sequence Characterization and Expression Analysis of Three APETALA2-like Genes from Saffron Crocus	Plant Molecular Biology Reporter	30	443-452	2012		
40149	0	Tran D.S., Tran T.T.H., Nguyen T.L.H., Ha M.L., Dinh B.Y., Kumamaru T., Satoh H.	Variation on grain quality in Vietnamese rice cultivars collected from central Vietnam	Journal of the Faculty of Agriculture, Kyushu University	57	365-371	2012		
40150	0	Belefant-Miller H.	Specific panicle responses resulting from MSMA-induced straighthead sterility in rice	Plant Growth Regul.	66	255-264	2012		
40151	0	Suzuki S., Ma J.F., Yamamoto N., Hattori T., Sakamoto M., Umezawa T.	Silicon deficiency promotes lignin accumulation in rice	Plant Biotechnology	29	391-394	2012		
40152	0	Tokmakov S.V., Mukhina Z.M., Bogomaz D.I., Matveeva T.V.	Development of a molecular marker for assessment of intraspecific polymorphism by the Rc gene that determines the red color of pericarp in rice Oryza sativa L.	Russian Journal of Genetics: Applied Research	2	357-366	2012		
40153	0	Bhadru D., Tirumala Rao V., Chandra Mohan Y., Bharathi D.	Genetic variability and diversity studies in yield and its component traits in Rice (Oryza sativa L.)	Sabrao Journal of Breeding and Genetics	44	129-137	2012		
40154	0	Alegbejo J.O., Ameh D.A.	Glycaemic index and blood glucose responses of type 2 diabetes mellitus and healthy subjects to rice and beans meal	Journal of Pure and Applied Microbiology	6	773-780	2012		
40155	0	Guo T.R., Yao P.C., Zhang Z.D., Wang J.J., Wang M.	Involvement of Antioxidative Defense System in Rice Seedlings Exposed to Aluminum Toxicity and Phosphorus Deficiency	Rice Science	19	207-212	2012		
40156	0	Petter F.A., Pacheco L.P., Zuffo A.M., Alcantara Neto F., Ribeiro W.R.M.	ALS-inhibiting herbicides applied in upland-rice post-emergence [Herbicidas Inibidores da ALS Aplicados em Pos-Emergencia no Arroz de Terras Altas]	Planta Daninha	30	617-625	2012		
40157	0	Zheng W.J., Liu Z.H., Zhao J.M., Chen W.F.	Genetic Analysis of Stripe disease resistance in Rice Restorer Line C224 Using Major Gene plus Polygene Mixed Effect Model	Rice Science	19	202-206	2012		
40158	0	Winarto B., Teixeira da Silva J.A.	Influence of isolation technique of half-anthers and of initiation culture medium on callus induction and regeneration in Anthurium andreanum	Plant Cell Tissue Organ Cult.	110	401-411	2012		
40159	0	Dinh T.S., Zhou C., Cao X., Han C., Yu J., Li D., Zhang Y.	The complete genome sequence of southern rice black-streaked dwarf virus isolated from Vietnam	Plant Pathology Journal	28	428-432	2012		
40160	0	de Souza C.R., Ghosh A.K., da Silva I.R., de Alvarenga E.S., Novais R.F., de Jesus G.L.	Phosphorus transformation in poultry litter and litter-treated Oxisol of Brazil assessed by 31P-NMR and wet chemical fractionation [Transforma??o de f?sforo em camas de avi?rio e em Latossolo tratado com cama de avi?rio avaliadas por meio de 31P-RMN e fracionamento qu?mico]	Rev. Bras. Cienc. Solo	36	1516-1527	2012		
40161	0	Shibayama M., Sakamoto T., Takada E., Inoue A., Morita K., Yamaguchi T., Takahashi W., Kimura A.	Estimating rice leaf greenness (SPAD) using fixed-point continuous observations of visible red and near infrared narrow-band digital images	Plant Prod. Sci.	15	293-309	2012		
40162	0	Rao G.J.N., Swain D., Mishra R., Prasad D., Krishna R.S., Rao R.N., Sahu R.K.	Marker Based Estimation of Gene Flow in Tropical Rice Fields and Its Ecological Consequences	Trop Plant Biol	5	277-285	2012		
40163	0	Bharadwaj C., Tara Satyavathi C., Rao S.K., Mishra R., Suman J., Mishra D.K.	Heterosis for yield arid yield components in selected new plant type crosses of rice (Oryzasativa L.)	Tropical Agriculture	89	55-64	2012		
40164	0	Yamazaki M., Asakawa S., Murase J., Kimura M.	Phylogenetic diversity of microturbellarians in Japanese rice paddy fields, with special attention to the genus Stenostomum	Soil Sci. Plant Nutr.	58	11-23	2012		
40165	22272223	Xu W., Zhai Z., Huang K., Zhang N., Yuan Y., Shang Y., Luo Y.	A novel universal primer-multiplex-PCR method with sequencing gel electrophoresis analysis	PLoS ONE	7	e22900	2012		
40166	0	Kumar G.S., Raju M.S., Kumar R.M.	Influence of nitrogen levels on yield, grain quality and nitrogen uptake of rice cultivars	Research on Crops	13	16-20	2012		
40167	0	Nagaoka I., Sasahara H., Shigemune A., Goto A., Miura K.	The effect of high-temperature stress applied to the root on grain quality of rice	Plant Prod. Sci.	15	274-277	2012		
40168	0	Cao H.X., Hanan J.S., Liu Y., Liu Y.X., Yue Y.B., Zhu D.W., Lu J.F., Sun J.Y., Shi C.L., Ge D.K., Wei X.F., Yao A.Q., Tian P.P., Bao T.L.	Comparison of Crop Model Validation Methods	Journal of Integrative Agriculture	11	1274-1285	2012		
40169	0	Lu Y., Song Z., Lu K., Lian X., Cai H.	Molecular characterization, expression and functional analysis of the amino acid transporter gene family (OsAATs) in rice	Acta Physiologiae Plantarum	34	1943-1962	2012		
40170	23136511	Fukuta Y., Konisho K., Senoo-Namai S., Yanagihara S., Tsunematsu H., Fukuo A., Kumashiro T.	Genetic characterization of rainfed upland New Rice for Africa (NERICA) varieties	Breed. Sci.	62	27-37	2012		
40171	0	Hijam L., Dewanjee S.D., Sarkar K.K.	Influence of root characters on drought resistance in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	72	221-225	2012		
40172	0	Kumar S., Gupta D., Nayyar H.	Comparative response of maize and rice genotypes to heat stress: Status of oxidative stress and antioxidants	Acta Physiologiae Plantarum	34	75-86	2012		
40173	0	Deshmukh R.K., Sonah H., Kondawar V., Tomar R.S.S., Deshmukh N.K.	Identification of meta quantitative trait loci for agronomical traits in rice (Oryza sativa)	Indian Journal of Genetics and Plant Breeding	72	264-270	2012		
40174	0	DUAN Y.L., GUAN H.Z., ZHUO M., CHEN Z.W., LI W.T., PAN R.S., MAO D.M., ZHOU Y.C., WU W.R.	Genetic Analysis and Mapping of an Enclosed Panicle Mutant Locus ESP1 in Rice (Oryza sativa L.)	Journal of Integrative Agriculture	11	1933-1939	2012		
40175	0	Cai H., Xie W., Zhu T., Lian X.	Transcriptome response to phosphorus starvation in rice	Acta Physiologiae Plantarum	34	327-341	2012		
40176	0	Zhao Y., Chen C., Rong J., Dong S., Liao H., Lu F., Lu B., Chen J., Song Z.	Population clonal diversity and fine-scale genetic structure in Oryza officinalis (Poaceae) from China, implications for in situ conservation	Genet. Resour. Crop Evol.	59	113-124	2012		
40177	0	Asadi A., Ghadamyari M., Sajedi R.H., Sendi J.J., Tabari M.	Biochemical characterization of ??- and ??-glucosidases in alimentary canal, salivary glands and haemolymph of the rice green caterpillar, Naranga aenescens M. (Lepidoptera: Noctuidae)	Biologia (Poland)	67	1186-1194	2012		
40178	0	Ali M., Alghamdi S., Begum M., Anwar Uddin A., Alam M., Huang D.	Screening of rice genotypes for resistance to the brown planthopper, Nilaparvata lugens Stal	Cereal Res. Commun.	40	502-508	2012		
40179	0	Jeng T.L., Lai C.C., Ho P.T., Shih Y.J., Sung J.M.	Agronomic, molecular and antioxidative characterization of red- and purple-pericarp rice (Oryza sativa L.) mutants in Taiwan	J. Cereal Sci.	56	425-431	2012		
40180	0	Wakayama M., Aoki N.	Metabolome analysis using CE-MS for crop science	Japanese Journal of Crop Science	81	357-362	2012		
40181	0	Chung H.J., Cho D.W., Park J.D., Kweon D.K., Lim S.T.	In vitro starch digestibility and pasting properties of germinated brown rice after hydrothermal treatments	J. Cereal Sci.	56	451-456	2012		
40182	0	Mishra S.K., Tiwari A.K.	Phenological, quantitative and analytical studies of Pleurotus flabellatus	Afr. J. Biotechnol.	11	346-354	2012		
40183	0	Carvalho A.V., Mattietto R.A., Bassinello P.Z., Koakuzu S.N., Rios A.O., Maciel R.A., Carvalho R.N.	Processing and characterization of extruded breakfast meal formulated with broken rice and bean flour [Processamento e caracterizacao de refeicao matinal extrusada formulada com farinha de graos quebrados de arroz e feijao]	Ciencia e Tecnologia de Alimentos	32	515-524	2012		
40184	0	Dong Y., Pei X., Yuan Q., Wang F., Wu H., Jia S., Peng Y.	Genetic differentiation of Oryza ruffipogon Griff. from Hainan Island and Guangdong, China Based on Hd1 and Ehd1 genes	Biochem. Syst. Ecol.	45	224-236	2012		
40185	23046655	Conte S.S., Walker E.L.	Genetic and Biochemical Approaches for Studying the Yellow Stripe-Like Transporter Family in Plants	Curr Top Membr	69	295-322	2012		
40186	0	Kanda E., Kimura T., Oikawa A., Ookawa S., Sasaki J., Asano M., Sato Y., Kon K., Fujii H., Fujimura S., Suzuki Y., Hamasaki T., Nemoto M., Shimono H.	Factors responsible for regional variation of cold tolerance in rice in Northern Japan	Japanese Journal of Crop Science	81	190-193	2012		
40187	0	Zhang D.P., Wu J.G., Li G., Shi C.H.	The screening and preliminary construction of quality mutant population for cultivar "Nipponbare" in japonica rice (Oryza sativa)	Biologia (Poland)	67	1099-1106	2012		
40188	0	Yoshinaga S., Nagata K., Shiratsuchi H., Fukuda A.	Characteristics of grain quality and the causal factors in direct-seeded rice (Oryza stiva L.) in lowland field in a cooler region of Japan	Japanese Journal of Crop Science	81	432-440	2012		
40189	0	Shi Z., Li D., Jing Q., Cai J., Jiang D., Cao W., Dai T.	Effects of nitrogen applications on soil nitrogen balance and nitrogen utilization of winter wheat in a rice-wheat rotation	Field Crops Res.	127	241-247	2012		
40190	0	Sarao P.S., Mahal M.S.	Evaluation of rice germplasm for resistance to a leaffolder, stemborer and planthopper under field and glasshouse conditions in India	Int J Trop Insect Sci	32	126-135	2012		
40191	0	Takai T., Arai-Sanoh Y., Iwasawa N., Hayashi T., Yoshinaga S., Kondo M.	Comparative mapping suggests repeated selection of the same quantitative trait locus for high leaf photosynthesis rate in rice high-yield breeding programs	Crop Sci.	52	2649-2658	2012		
40192	0	Feng Q., Yang C., Lin X., Wang J., Ou X., Zhang C., Chen Y., Liu B.	Salt and alkaline stress induced transgenerational alteration in DNA methylation of rice (Oryza sativa)	Aust J Crop Sci	6	877-883	2012		
40193	0	Cui H., Ren W.	Performance test of rice seed tape twisting mechanism	International Agricultural Engineering Journal	21	59-64	2012		
40194	0	Singh S.P., Singh P., Singh S.	Design and development of hand operated maize dehusker-sheller for farm women	AMA, Agricultural Mechanization in Asia, Africa and Latin America	43	15-21	2012		
40195	0	Hosoda K., Matsuo M., Miyaji M., Matsuyama H., Maeda H., Ohta H., Kato H., Nonaka K.	Fermentative quality of purple rice (Oryza sativa L.) silage and its effects on digestibility, ruminal fermentation and oxidative status markers sheep: A preliminary study	Grassland Science	58	161-169	2012		
40196	0	Singh B., Katiyar D., Singh D.V., Jayaswal A.	Nitrogen fertilizer-induced spatial variation in the size of methane oxidizing bacterial population in rainfed rice cultivars	Asian Journal of Agricultural Research	6	158-170	2012		
40197	0	Arif C., Setiawan B.I., Mizoguchi M., Doi R.	Estimation of water balance components in paddy fields under non-flooded irrigation regimes by using excel solver	Journal of Agronomy	11	53-59	2012		
40198	0	Lu J., Jiang L., Chen D., Toyota K., Strong P.J., Wang H., Hirasawa T.	Decontamination of anaerobically digested slurry in a paddy field ecosystem in Jiaxing region of China	Agriculture, Ecosystems and Environment	146	13-22	2012		
40199	0	Ali M., Alghamdi S., Begum M., Anwar Uddin A., Alam M., Huang D.	Screening of rice genotypes for resistance to the brown planthopper, Nilaparvata lugens St?l	Cereal Res. Commun.	40	502-508	2012		
40200	0	Inthavong T., Tsubo M., Fukai S.	Soil clay content, rainfall, and toposequence positions determining spatial variation in field water availability as estimated by a water balance model for rainfed lowland rice	Crop and Pasture Science	63	529-538	2012		
40201	0	Pei H., Nakamura K.	Biodiversity and abundance of spider assemblages in restored terraced paddies	Acta Arachnologica	61	31-39	2012		
40202	0	Elanchezhian R., Abdul Haris A., Biswas S., Chhabra V.	Simulation of yield and its component traits of rice (oryza sativa l.) Varieties grown in indo-gangetic plains of bihar under projected climate change	Indian Journal of Plant Physiology	17	195-202	2012		
40203	0	Wang Q.Z., Fu H.W., Huang J.Z., Zhao H.J., Li Y.F., Zhang B., Shu Q.Y.	Generation and characterization of bentazon susceptible mutants of commercial male sterile lines and evaluation of their utility in hybrid rice production	Field Crops Res.	137	12-18	2012		
40204	0	Saito K., Sokei Y., Wopereis M.C.S.	Enhancing rice productivity in West Africa through genetic improvement	Crop Sci.	52	484-493	2012		
40205	0	Bahaar S.W.N., Bhat G.A.	Community structure and distribution of epigeal-cum-herb layer fauna in the rice fields of Kashmir (J and K) India	Asian Journal of Agricultural Research	6	30-38	2012		
40206	0	Mahanta K., Jha D.K., Rajkhowa D.J., Manoj-Kumar	Microbial enrichment of vermicompost prepared from different plant biomasses and their effect on rice (Oryza sativa L.) growth and soil fertility	Biological Agriculture and Horticulture	28	241-250	2012		
40207	0	Kumar N., Nandwal A.S., Yadav R., Bhasker P., Kumar S., Devi S., Singh S., Lather V.S.	Assessment of chickpea genotypes for high temperature tolerance	Indian Journal of Plant Physiology	17	225-232	2012		
40208	0	Yadav V.K., Kumar R.	Characters association and path analysis of yield and its components in aromatic rice (Oryza Sativa L.) genotypes	Plant Archives	12	607-611	2012		
40209	0	Shukla R., Dwivedi D.K.	Development of zerophytic rice genotypes by analyzing the correlation and path analysis for its yield components	Plant Archives	12	775-783	2012		
40210	0	Sunitha Devi R., Venkat Reddy A., Malathi S., Vishnu Vardhan Reddy D.	Bio-efficacy of certain new insecticides against yellow stem borer, scirpophaga incertulas (walker) in rice	Pestology	36	44-46	2012		
40211	0	Zhang R.S., Liu Y.F., Luo C.P., Wang X.Y., Liu Y.Z., Qiao J.Q., Yu J.J., Chen Z.Y.	Bacillus amyloliquefaciens Lx-11, a potential biocontrol agent against rice bacterial leaf streak	Journal of Plant Pathology	94	609-619	2012		
40212	0	Rawat L., Singh Y., Shukla N., Kumar J.	Seed biopriming with salinity tolerant isolates of Trichoderma harzianum alleviates salt stress in rice: Growth, physiological and biochemical characteristics	Journal of Plant Pathology	94	353-365	2012		
40213	0	Sidde Gowda D.K., Prasanna Kumar M.K., Yogananda S.B., Dharshini G.M., Pandurangegowda K.T.	Pre mixture insecticides - A novel approach to manage rice insect pests with different mode of feeding	Pestology	36	31-34	2012		
40214	0	Yadav V.K., Kumar R.	Assessment of selection parameters for achieving higher yield in aromatic rice genotypes	Plant Archives	12	1121-1123	2012		
40215	0	Satheeshkumar P., Saravanan K.	Genetic divergence analysis for grain yield and quality traits in rice (Oryza Sativa L.)	Plant Archives	12	639-644	2012		
40216	0	Bhanu K.V., Reddy P.S.	Evaluation of field efficacy of imidacloprid 40% + ethiprole 40% - 80 wg against planthoppers in rice	Pestology	36	29-34	2012		
40217	24163954	Mahima, Garg A.K., Mudgal V.	Influence of sodium selenite on growth, nutrient utilization and selenimn uptake in Cavia porcellus	Pakistan Journal of Biological Sciences	15	448-453	2012		
40218	0	Rengel M., Cruz J., Croce J., Montano J., Chirinos I.	Effect of foliar fertilization with zinc and boron on yield components of rice crop (Oryza sativa L.) grown in flooded soils [Efecto de la fertilizacion foliar con zinc y boro sobre los componentes del rendimiento en el cultivo de arroz (Oryza sativa L.) en suelos inundados]	Revista Cientifica UDO Agricola	12	158-166	2012		
40219	0	Alvarez R.C.F., Crusciol C.A.C., Nascente A.S., Rodrigues J.D., Habermann G.	Gas exchange rates, plant height, yield components, and productivity of upland rice as affected by plant regulators	Pesqui. Agropecu. Bras.	47	1455-1461	2012		
40220	0	Fonseca A.E., Arf O., Junior V.O., Buzetti S., Rodrigues R.A.F.	Soil management and topdressing nitrogen doses on upland rice [Preparo do solo e doses de nitrogenio em cobertura em arroz de terras altas]	Pesquisa Agropecuaria Tropical	42	246-253	2012		
40221	0	Binang W.B., Shiyam J.O., Ntia J.D.	Effect of seed priming method on agronomic performance and cost effectiveness of rainfed, dry-seeded NERICA rice	Research Journal of Seed Science	5	136-143	2012		
40222	0	Boldrin P.F., Faquin V., Ramos S.J., Guilherme L.R.G., Bastos C.E.A., Carvalho G.S., Costa E.T.D.S.	Selenate and selenite on yield and agronomic biofortification with selenium in rice [Selenato e selenito na producao e biofortificacao agronomica com selenio em arroz]	Pesqui. Agropecu. Bras.	47	831-837	2012		
40223	0	Ghafoor A., Murtaza G., Rehman M.Z., Saifullah, Sabir M.	Reclamation and salt leaching efficiency for tile drained saline-sodic soil using marginal quality water for irrigating rice and wheat crops	Land Degradation and Development	23	1-9	2012		
40224	0	Fogliatto S., Vidotto F., Ferrero A.	Morphological characterisation of Italian weedy rice (Oryza sativa) populations	Weed Res.	52	60-69	2012		
40225	0	Araujo J.L., Faquin V., Vieira N.M.B., de Oliveira M.V.C., Soares A.A., Rodrigues C.R., Mesquita A.C.	Rice growth and yield at different nitrate- ammonium ratios [Crescimento e Producao do Arroz Sob Diferentes Proporcoes de Nitrato e de Amonio]	Rev. Bras. Cienc. Solo	36	921-930	2012		
40226	19825583	Li-Rong Zeng, Chan Ho Park, R C Venu, Gough J., Guo-Liang Wang	Classification, expression pattern, and E3 ligase activity assay of rice U-box-containing proteins.	Mol Plant	1(5)	800-15	2008	_,RLCK112,_,_,_,ELF1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RLCK306,_,_,_,_,RLCK305,_,_,_,_,_,RLCK69,_,RLCK81,RLCK93,RLCK207,RLCK280,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,RLCK307,RLCK285,RLCK91,RLCK111,_,_,RLCK281,SPL11,_,_,RLCK194,_,_,_,_,RLCK197	OsPUB36,OsPUB57, OsRLCK112,OsPUB27,OsPUB26,OsPUB28,OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1,OsPUB34,OsPUB22,OsPUB24,OsPUB19,OsPUB21,OsPUB18,OsPUB20,OsPUB16,OsPUB12,OsPUB9,OsPUB7,OsPUB8,OsPUB1, OsUFD2,OsPUB40,OsPUB42,OsPUB54, OsRLCK306,OsPUB65,OsPUB13, OsSTA182,OsPUB43,OsPUB35,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,OsPUB44,OsWD40-178, OsPUB72,OsWD40-9, OsPUB71,OsPUB74,OsPUB60,OsPUB48, OsRLCK69,OsPUB15, PUB15,OsPUB55, OsRLCK81,OsPUB50, OsRLCK93,OsPUB47, OsRLCK207,OsPUB52, OsRLCK280,OsPUB6,OsPUB4,OsPUB5,OsPUB10,OsPUB14,OsPUB17,OsPUB23,OsPUB25,OsPUB29,OsPUB31,OsPUB33,OsPUB37,OsPUB38,OsPUB39,OsPUB58,OsPUB63,OsPUB66,OsPUB73,OsPUB76,OsPUB77, OsEnS-73,OsPUB45,OsPUB46,OsPUB49, OsRLCK307,OsPUB61, OsRLCK285,OsPUB62, OsRLCK91,OsPUB59, OsRLCK111,OsPUB30,OsPUB64, PUB64, OsHOP1, HOP1,OsPUB56, OsRLCK281,spl11, spl11*, OsPUB11, PUB11,OsPUB32,OsPUB3, PUB3,OsPUB51, OsRLCK194,OsPUB68,OsPUB2,OsPUB67,OsPUB69,OsPUB70, PUB70, OsRLCK197
40227	19021904	Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jakab S., Zheng C., Zhong Y.	Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis.	BMC Genomics	9	550	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,DCW11,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,XB15,_,_,_,_,PP2C1	OsPP2C73, PP2C73, OsPP116,OsPP2C01, PP2C01, OsPP2C1, PP2C1, OsPP1, OsPBCP, PBCP ,OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPP2C34, PP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c,OsPP2C27, PP2C27, OsPP40,OsPP2C41, PP2C41, OsPP66,OsPP2C56, PP2C56, OsPP87,OsPP2C18, PP2C18, OsPP28,OsPP2C29, PP2C29, OsPP46,OsPP2C21, PP2C21, OsPP31,OsPP2C38, PP2C38, OsPP63,OsPP2C60, PP2C60, OsPP92,OsPP2C31, PP2C31, OsPP49,OsPP2C17, PP2C17, OsPP27,OsPP2C07, PP2C07, OsPP2C7, PP2C7, OsPP11, PP11,OsPP2C20, PP2C20, OsPP30,OsPP2C69, PP2C69, OsPP109,OsPP2C71, PP2C71, OsPP111,OsPP2C72, PP2C72, OsPP114,OsPP2C76, PP2C76, OsPP122,OsPP2C77, PP2C77, OsPP129,OsPP2C74, PP2C74, OsPP120,OsPP2C36, PP2C36, OsPP60,OsPP2C70, PP2C70, OsPP110,OsPP2C46, PP2C46, OsPP71,OsPP2C22, PP2C22, OsPP33,OsPP2C39, PP2C39, OsPP64,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9,OsPP2C62, PP2C62, OsPP95,OsPP2C64, PP2C64, OsPP97,OsPP2C55, PP2C55, OsPP86,OsPP2C43, PP2C43, OsPP68,OsPP2C32, PP2C32, OsPP50,OsPP2C23, PP2C23, OsPP34,OsPP2C05, PP2C05, OsPP2C5, PP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38,OsPP2C02, PP2C02, OsPP2C2, PP2C2, OsPP2,OsPP2C03, PP2C03, OsPP2C3, PP2C3, OsPP7,OsPP2C10, PP2C10, OsPP18,OsPP2C14, PP2C14, OsPP24,OsPP2C12, PP2C12, OsPP21,OsPP2C54, PP2C54, OsPP84,OsPP2C58, PP2C58, OsPP90,OsPP2C44, PP2C44, OsPP69,OsPP2C48, PP2C48, OsPP75,OsPP2C75, PP2C75, OsPP121,OsPP2C11, PP2C11, OsPP19,DCW11, OsPP2C13, PP2C13, OsPP22,OsPP2C04, PP2C04, OsPP2C4, PP2C4, OsPP8,OsPP2C15, PP2C15, OsPP25,OsPP2C19, PP2C19, OsPP29,OsPP2C24, PP2C24, OsPP35,OsPP2C25, PP2C25, OsPP36,OsPP2C26, PP2C26, OsPP37,OsPP2C28, PP2C28, OsPP43,OsPP2C33, PP2C33, OsPP51,OsPP2C37, PP2C37, OsPP61,OsPP2C40, PP2C40, OsPP65,OsPP2C45, PP2C45, OsPP70,OsPP2C47, PP2C47, OsPP72,OsPP2C52, PP2C52, OsPP80,OsPP2C57, PP2C57, OsPP89,OsPP2C59, PP2C59, OsPP91,OsPP2C61, PP2C61, OsPP93,OsPP2C63, PP2C63, OsPP96,OsPP2C65, PP2C65, OsPP98,OsPP2C66, PP2C66, OsPP102,OsPP2C67, PP2C67, OsPP107,OsPP2C78, PP2C78, OsPP131,OsPP2C42, PP2C42, OsPP67,OsPP2C16, PP2C16, OsPP26,OsPP2C50, PP2C50, OsPP78, OsABIL3, ABIL3,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsPP2C08, PP2C08, OsPP2C8, PP2C8, OsPP12,OsPP2C51, PP2C51, OsPP79,OsPP2C30, PP2C30, OsPP48, PP48,OsPP2C49, PP2C49, OsPP76,OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108
40228	19109415	Ding X., Richter T., Chen M., Fujii H., Young Su Seo, Xie M., Zheng X., Kanrar S., Rebecca A Stevenson, Dardick C., Li Y., Jiang H., Zhang Y., Yu F., Laura E Bartley, Chern M., Bart R., Chen X., Zhu L., William G Farmerie, Gribskov M., Jian-Kang Zhu, Michael E Fromm, Pamela C Ronald, Wen-Yuan Song	A rice kinase-protein interaction map.	Plant Physiol.	149(3)	1478-92	2009		
40229	24280589	Toda T., Toriyama K.	Re-sequencing of mitochondrial genes in a standard rice cultivar Nipponbare.	Rice (N Y)	6	2	2013	26S  rRNA,18S  rRNA,_,_,RPL2,NAD6,NAD4	rrn26,rrn18,mat-r, mat-r-1,ccmFn, ccmFn-1,rpl2,nad6,nad4, nadIV
40230	22137607	Giberti S., Bertea C.M., Narayana R., Maffei M.E., Forlani G.	Two phenylalanine ammonia lyase isoforms are involved in the elicitor-induced response of rice to the fungal pathogen Magnaporthe oryzae.	J. Plant Physiol.	169(3)	249-54	2012	_,_,_,_,_,PAL,_,_,PAL1,PAL1,_	OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,PAL11,PAL09,PAL10,PAL03, OsPAL8 ,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,OsPAL05, PAL05, OsPAL3, PAL5, PAL3,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL04, PAL04, PAL, OsPAL7, PAL7
40231	18705865	Takakura Y., Fang-Sik Che, Ishida Y., Tsutsumi F., Kurotani K., Usami S., Isogai A., Imaseki H.	Expression of a bacterial flagellin gene triggers plant immune responses and confers disease resistance in transgenic rice plants.	Mol. Plant Pathol.	9(4)	525-9	2008	PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1
40232	17415624	Hai Hong Bi, Ren Sen Zeng, Li Ming Su, An M., Shi Ming Luo	Rice allelopathy induced by methyl jasmonate and methyl salicylate.	J. Chem. Ecol.	33(5)	1089-103	2007	PAL1,_	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,C4H, OsC4H
40233	15838683	Mase K., Sato K., Nakano Y., Nishikubo N., Tsuboi Y., Zhou J., Kitano H., Katayama Y.	The ectopic expression of phenylalanine ammonia lyase with ectopic accumulation of polysaccharide-linked hydroxycinnamoyl esters in internode parenchyma of rice mutant Fukei 71.	Plant Cell Rep.	24(8)	487-93	2005	PAL1,D12,GLN1;1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,d12(d50), dwf11, d50, d12, d32, F71, DMT9,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1
40234	14714141	L Wang, C An, W Qian, T Liu, J Li, Z Chen	Detection of the putative cis-region involved in the induction by a Pyricularia oryzae elicitor of the promoter of a gene encoding phenylalanine ammonia-lyase in rice.	Plant Cell Rep.	22(7)	513-8	2004	PAL1	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
40235	12060286	Sakurai N., Katayama Y., Yamaya T.	Overlapping expression of cytosolic glutamine synthetase and phenylalanine ammonia-lyase in immature leaf blades of rice.	Physiol Plant	113(3)	400-408	2001	PAL1,PAL,GLN1;1,PAL1	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
40236	22243810	Liu H., Li X., Xiao J., Wang S.	A convenient method for simultaneous quantification of multiple phytohormones and metabolites: application in study of rice-bacterium interaction.	Plant Methods	8(1)	2	2012	CHS,_,PAL1,AOS2,_,KS4,CPS4,_,NCED1,_,ABA1,NCED1	CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsAOS2, CYP74A2, OsAOS, OsAOS1,NIT1, OsNIT2, NIT2,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,ICS1, OsICS1, OsICS, ICS,OsNCED1, OsCCD4a, CCD4a,AAO3, OsAAO3, OsAO1, AO1,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 
40237	20807375	Shen X., Liu H., Yuan B., Li X., Xu C., Wang S.	OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis.	Plant Cell Environ.	34(2)	179-91	2011	WRKY13,_,PR5,DR10,PR10A,PAL1,NH1,ACDR1,ACS4,ACS1,ERF93,PR1B,CHT1,GH3-8,ACS2,AOS2,PR1A,ACS5,SSG6,MPK6,EIL1	OsWRKY13,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsPR5, Pir2, PR-5, PR5-1,OsDR10,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsEDR1, OsACDR1, EDR1,OsACS4, OS-ACS4,ACC1*, OsACS1, Os-ACS1, ACC1,OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsACS2, Os-ACS2,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsACS5, OS-ACS5, OsBphi008a,OsACS6, ACS6,OsMPK6, OsDR6, OsMPK4,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a
40238	0	XU YuFeng, ZHOU GongKe, ZHOU Lu, Li YiQin, LIU JinYuan	Expression patterns of the rice class I metallothionein gene family in response to lead stress in rice seedlings and functional complementation of its members in lead-sensitive yeast cells.	Chinese Science Bulletin	52(16)	2203-2209	2007		
40239	16008091	Gong-Ke Zhou, Yu-Feng Xu, Jin-Yuan Liu	Characterization of a rice class II metallothionein gene: tissue expression patterns and induction in response to abiotic factors.	J. Plant Physiol.	162(6)	686-96	2005	MTII1A	OsMT4, OsMT-II-1a, MT4, MT-II-1a
40240	0	Ichitani K., Yamaguchi D., Taura S., Fukutoku Y., Onoue M., Shimizu K., Hashimoto F., Sakata Y., Sato M.	Genetic analysis of ion-beam induced extremely late heading mutants in rice.	Breed. Sci.	64	222-230	2014	FLT1,EHD3,FLT2	,Ehd3,
40241	24728832	Li J.Y., Liu J., Dong D., Jia X., McCouch S.R., Kochian L.V.	Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance.	Proc. Natl. Acad. Sci. U.S.A.	111(17)	6503-8	2014	NRAMP4,ALS1	OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,OsALS1, OsABCB25, ABCB25
40242	24755456	Fu Z., Yu J., Cheng X., Zong X., Xu J., Chen M., Li Z., Zhang D., Liang W.	The Rice Basic Helix-Loop-Helix Transcription Factor TDR INTERACTING PROTEIN2 Is a Central Switch in Early Anther Development.	Plant Cell	26(4)	1512-1524	2014	EAT1,AP37 ,CP1,GAMYB,_,PTC1,_,UDT1,TDR	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsAP37,OsCP1, Os CP1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsAP25, Radc1, AP25,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1,OsbHLH142, bHLH142, TIP2, OsTIP2,Udt1, bHLH164, OsUDT1, OsbHLH164 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1
40243	24760826	Vaughn J.N., Bennetzen J.L.	Natural insertions in rice commonly form tandem duplications indicative of patch-mediated double-strand break induction and repair.	Proc. Natl. Acad. Sci. U.S.A.	111(18)	6684-9	2014		
40244	24728647	Henry I.M., Nagalakshmi U., Lieberman M.C., Ngo K.J., Krasileva K.V., Vasquez-Gross H., Akhunova A., Akhunov E., Dubcovsky J., Tai T.H., Comai L.	Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing.	Plant Cell	26(4)	1382-1397	2014		
40245	24753573	Gross B.L., Zhao Z.	Archaeological and genetic insights into the origins of domesticated rice.	Proc. Natl. Acad. Sci. U.S.A.	111(17)	6190-7	2014		
40246	24781115	Wang E., Yu N., Bano S.A., Liu C., Miller A.J., Cousins D., Zhang X., Ratet P., Tadege M., Mysore K.S., Downie J.A., Murray J.D., Oldroyd G.E., Schultze M.	A H+-ATPase That Energizes Nutrient Uptake during Mycorrhizal Symbioses in Rice and Medicago truncatula.	Plant Cell	26(4)	1818-1830	2014	AHA8	OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1
40247	24692424	Lv Q., Zhong Y., Wang Y., Wang Z., Zhang L., Shi J., Wu Z., Liu Y., Mao C., Yi K., Wu P.	SPX4 Negatively Regulates Phosphate Signaling and Homeostasis through Its Interaction with PHR2 in Rice.	Plant Cell	26(4)	1586-1597	2014	_,PHR2	OsSPX4, SPX4, Os-SPX4,OsPHR2, Os-PHR2
40248	24777451	Sun H., Qian Q., Wu K., Luo J., Wang S., Zhang C., Ma Y., Liu Q., Huang X., Yuan Q., Han R., Zhao M., Dong G., Guo L., Zhu X., Gou Z., Wang W., Wu Y., Lin H., Fu X.	Heterotrimeric G proteins regulate nitrogen-use efficiency in rice.	Nat. Genet.	46(6)	652-6	2014	D1,DEP1,RGB1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsWD40-80, RGbeta1
40249	24856112	Asahina M., Tamaki Y., Sakamoto T., Shibata K., Nomura T., Yokota T.	Blue light-promoted rice leaf bending and unrolling are due to up-regulated brassinosteroid biosynthesis genes accompanied by accumulation of castasterone.	Phytochemistry	104	21-9	2014	D61,CPD2,CPD1,BRD1	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsCPD2, CYP90A4, CYP90A4/OsCPD2,OsCPD1, CYP90A3, CYP90A3/OsCPD1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
40250	24875416	Li F.P., Yoon M.Y., Li G., Ra W.H., Park J.W., Kwon S.J., Kwon S.W., Ahn I.P., Park Y.J.	Transcriptome analysis of grain-filling caryopses reveals the potential formation mechanism of the rice sugary mutant.	Gene	546(2)	318-26	2014	AGPS2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
40251	24961368	Chen A., Li C., Hu W., Lau M.Y., Lin H., Rockwell N.C., Martin S.S., Jernstedt J.A., Lagarias J.C., Dubcovsky J.	Phytochrome C plays a major role in the acceleration of wheat flowering under long-day photoperiod.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10037-44	2014		
40252	24908251	Chen W., Gao Y., Xie W., Gong L., Lu K., Wang W., Li Y., Liu X., Zhang H., Dong H., Zhang W., Zhang L., Yu S., Wang G., Lian X., Luo J.	Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism.	Nat. Genet.	46(7)	714-21	2014	ATASE1,NOMT,PDX1.3B,UGT706D1,CYP51G3,_,_,C,_,COMTL4,CYP72A1,_,_,_,_,_,_,_,_,_,PDX1.3A,CYP76M7,UGT72F1,UGT707A2,_,TBT2,_,_,_,_,_,_,_,_,_	Atase1, OsATASE1,OsNOMT, COMTL3, OsCOMTL3,OsPDX1.3b,UGT, OsUGT706D1,OsCYP51G3,,OsSTA240,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,OsMaT-2,OsCOMTL4, COMT2 ,CYP72A1,,,,,UGT,,,,UGT,OsPDX1.3a,OsCYP76M7, CYP76M10, OsCYP76M10,,UGT, OsUGT707A2,,Os-TBT2, OsTBT2,OsTPS29, TPS29, OsCAS, CAS, OsTPS3, TPS3,UGT,OsAT4c, AT4c,UGT,UGT,,UGT,,OsMaT-3
40253	25243661	Jahani M., Nematzadeh G., Dolatabadi B., Hashemi S.H., Mohammadi-Nejad G.	Identification and validation of functional markers in a global rice collection by association mapping.	Genome	57(6)	355-62	2014		
40254	24951508	Liang C., Wang Y., Zhu Y., Tang J., Hu B., Liu L., Ou S., Wu H., Sun X., Chu J., Chu C.	OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice.	Proc. Natl. Acad. Sci. U.S.A.	111(27)	10013-8	2014	HKT6,NCED1,RCCR1,_,_,NYC3,_,PTR2,_,NYC1,NAC58,NCED1,NRAMP1,SGR,ABA1,PHO1;3,_,NCED3,_	OsHKT6, OsHKT1;3, HKT1;3,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsRCCR1, OsRCCR, RCCR,Osh36, OsH36, H36, OsAMTR1, AMTR1,OsPTR3, PTR3-A,nyc3, OsNYC3, PPH,Osh69,OsPTR2, OsNPF2.2, NPF2.2,OsI57, I57, OsKAT1, KAT1,nyc1, OsNYC1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsNCED1, OsCCD4a, CCD4a,OsNramp1, OsNRAMP1, OsNramp6,sgr(t), sgr, OsSGR, OsSgr,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsPHO1;3, OsPHT1,OsPOT,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85
40255	24907341	Li C.H., Wang G., Zhao J.L., Zhang L.Q., Ai L.F., Han Y.F., Sun D.Y., Zhang S.W., Sun Y.	The Receptor-Like Kinase SIT1 Mediates salt sensitivity by Activating MAPK3/6 and Regulating Ethylene Homeostasis in Rice.	Plant Cell	26(6)	2538-2553	2014	MSRMK2,MAPK6,_,_,_	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,SIT3,SIT1,SIT2
40256	24982153	Xiong W., He L., Lai J., Dooner H.K., Du C.	HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10263-8	2014		
40257	24949534	Kim S., Park J., Lee J., Shin D., Park D.S., Lim J.S., Choi I.Y., Seo Y.S.	Understanding pathogenic Burkholderia glumae metabolic and signaling pathways within rice tissues through in vivo transcriptome analyses.	Gene	547(1)	77-85	2014		
40258	24982146	Wang Y., Fan X., Lin F., He G., Terzaghi W., Zhu D., Deng X.W.	Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10359-64	2014	_	OsHID1
40259	24911626	Yu M., Yu J., Gu C., Nie Y., Chen Z., Yin X., Liu Y.	De novo sequencing and transcriptome analysis of Ustilaginoidea virens by using Illumina paired-end sequencing and development of simple sequence repeat markers.	Gene	547(2)	202-10	2014		
40260	24950892	Jiang G., Xiang Y., Zhao J., Yin D., Zhao X., Zhu L., Zhai W.	Regulation of Inflorescence Branch Development in Rice Through a Novel Pathway Involving the Pentatricopeptide Repeat Protein sped1-D.	Genetics	197(4)	1395-1407	2014	_,_,RFL,NAL2,NAL3	GID1L2,SPED1, OsSPED1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS
40261	24982173	Li G., Liang W., Zhang X., Ren H., Hu J., Bennett M.J., Zhang D.	Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.	Proc. Natl. Acad. Sci. U.S.A.	111(28)	10377-82	2014	BUI1,ARF1,ARF24,LRA1,PIN1B	BUI1, FH5, FH5/BUI1, RMD, OsFH5, FH5/RMD ,OsARF1, arf1, OsARF23, ARF23,OsARF24,OsPIN2, PIN2, OsLRA1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
40262	24894043	Ko S.S., Li M.J., Sun-Ben Ku M., Ho Y.C., Lin Y.J., Chuang M.H., Hsing H.X., Lien Y.C., Yang H.T., Chang H.C., Chan M.T.	The bHLH142 Transcription Factor Coordinates with TDR1 to Modulate the Expression of EAT1 and Regulate pollen Development in Rice.	Plant Cell	26(6)	2486-2504	2014	EAT1,GAMYB,UDT1,TDR,AP37 ,_,_	OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,Udt1, bHLH164, OsUDT1, OsbHLH164 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsAP37,OsbHLH142, bHLH142, TIP2, OsTIP2,OsAP25, Radc1, AP25
40263	24906292	Quilichini T.D., Grienenberger E., Douglas C.J.	The biosynthesis, composition and assembly of the outer pollen wall: A tough case to crack.	Phytochemistry			2014	_,OSC6,_,CYP704B2,LAP6	OsMS2, MS2, OsDPW, DPW, DPW1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsTKPR1, OsDFR2, OS-DFR2, OsDFR2A,OsCYP704B2,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6
40264	24905652	Ramkumar G., Madhav M.S., Rama Devi SJ., Manimaran P., Mohan K.M., Prasad M.S., Balachandran S.M., Neeraja C.N., Sundaram R.M., Viraktamath B.C.	Nucleotide diversity of Pita, a major blast resistance gene and identification of its minimal promoter.	Gene	546(2)	250-6	2014	PITA	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30
40265	24887487	Agarwal S., Tripura Venkata VG., Kotla A., Mangrauthia S.K., Neelamraju S.	Expression patterns of QTL based and other candidate genes in Madhukar ~ Swarna RILs with contrasting levels of iron and zinc in unpolished rice grains.	Gene	546(2)	430-6	2014	NAS2,NAS3,YSL15,NRAMP1,ZIP8,YSL1,YSL2,DMAS1,NAS1,IRT1,IRT2	OsNAS2,OsNAS3,OsYSL15, OsYs7,OsNramp1, OsNRAMP1, OsNramp6,OsZIP8, OsZIP1,OsYSL1, OsYs1,OsYSL2, Os-YSL2, OsYs6 ,OsDMAS1,OsNAS1,OsIRT1,OsIRT2, OsIRT1
40266	25035404	Xie K., Chen J., Wang Q., Yang Y.	Direct phosphorylation and activation of a mitogen-activated protein kinase by a calcium-dependent protein kinase in rice.	Plant Cell	26(7)	3077-89	2014	MSRMK2,CDPK18	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18
40267	25002488	Hu L., Li N., Xu C., Zhong S., Lin X., Yang J., Zhou T., Yuliang A., Wu Y., Chen Y.R., Cao X., Zemach A., Rustgi S., von Wettstein D., Liu B.	Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality.	Proc. Natl. Acad. Sci. U.S.A.	111(29)	10642-7	2014	MET1A,MET1B	OsMET1a, OsMET1-1, MET1a, MET1-1,OsMET1b, OsMET1-2, MET1b, MET1
40268	25064006	Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.	The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.	Nat. Genet.	46(9)	982-8	2014	NAC6,SH4,EP3,EP2,SH1,XA3,SD1,DEP1,qSH1	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,ep2, EP2/DEP2/SRS1, SRS1/DEP2, DEP2, SRS1, CL7(t),YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,qSH1, qsh1, qSH-1
40269	25082857	Jiao Y., Li J., Tang H., Paterson A.H.	Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots.	Plant Cell	26(7)	2792-802	2014		
40270	25014137	Akkuratov E.E., Walters L., Saha-Mandal A., Khandekar S., Crawford E., Zirbel C.L., Leisner S., Prakash A., Fedorova L., Fedorov A.	Bioinformatics analysis of plant orthologous introns: identification of an intronic tRNA-like sequence.	Gene	548(1)	81-90	2014		
40271	25012190	Olek A.T., Rayon C., Makowski L., Kim H.R., Ciesielski P., Badger J., Paul L.N., Ghosh S., Kihara D., Crowley M., Himmel M.E., Bolin J.T., Carpita N.C.	The structure of the catalytic domain of a plant cellulose synthase and its assembly into dimers.	Plant Cell	26(7)	2996-3009	2014	CESA8	OsCesA8, OsCESA8, OS_CESA08, CesA8
40272	25038275	Yang J., Zhang H.M., Liu X.Y., Li J., Lv M.F., Li P.P., Dai L.Y., Chen J.P.	Identification of 23 novel conserved microRNAs in three rice cultivars.	Gene	548(2)	285-93	2014	_,_,_,MIR5788,_,_,_,_,_,_,_,_,_,_,_,MIR160B,_,_,_,_,_,_,_	NolmiR-45,NolmiR-162,NolmiR-74,miR5788, osa-miR5788, osa-MIR5788, NolmiR-3,NolmiR-23,NolmiR-62,NolmiR-95,NolmiR-105,NolmiR-142,NolmiR-230,NolmiR-349,NolmiR-432,NolmiR-150,NolmiR-63,NolmiR-112,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,NolmiR-50,NolmiR-185,NolmiR-58,NolmiR-86,NolmiR-101,NolmiR-53,NolmiR-56
40273	25028496	Sang D., Chen D., Liu G., Liang Y., Huang L., Meng X., Chu J., Sun X., Dong G., Yuan Y., Qian Q., Li J., Wang Y.	Strigolactones regulate rice tiller angle by attenuating shoot gravitropism through inhibiting auxin biosynthesis.	Proc. Natl. Acad. Sci. U.S.A.	111(30)	11199-204	2014	D27,IAA20,LAZY1,D14,D3	d27(d t), dt, dwf23, d27, OsD27,OsIAA20,lazy1, LA1, OsLazy1,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3
40274	25096783	Li J., Long Y., Qi G.N., Li J., Xu Z.J., Wu W.H., Wang Y.	The Os-AKT1 Channel Is Critical for K+ Uptake in Rice Roots and Is Modulated by the Rice CBL1-CIPK23 Complex.	Plant Cell	26(8)	3387-402	2014	CBL1,CIPK23,CK1,PK4,_	OsCBL1, Os-CBL1,OsCIPK23, Os-CIPK23,OsCK1, CIPK31, OsCIPK31, Os-CIPK3,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19,OsAKT1, Os-AKT1, AKT1
40275	25106855	Cheng S., Huang Y., Zhu N., Zhao Y.	The rice WUSCHEL-related homeobox genes are involved in reproductive organ development, hormone signaling and abiotic stress response.	Gene	549(2)	266-74	2014	NAL3,WOX6,QHB,NAL2,WOX8,WOX1,WOX11,_,WOX10,WOX4,DWT1	nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsWOX6, Os WOX6, OsWOX12B,OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1,OsWOX11, Os WOX11, OsWOX12A,OsWOX9D,OsWOX10, Os WOX10, OsWOX11/12, OsWOX11,OsWOX4, Os WOX4,OsWOX7, Os WOX7, WOX7, OsWOX9A
40276	25178525	Sun X., Ling S., Lu Z., Ouyang Y.D., Liu S., Yao J.	OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.	Gene	551(2)	214-21	2014	_,_,_,ORC1,_,FST ,TA2,ORC2,CYCB1;1,FIE1,HAP3K	Orysa;Rb2, RBR2, OsRBR1,Orysa;E2F2, OsE2F2, E2F2,Orysa;E2F1, OsE2F1, E2F1,OsORC1,Orysa;Rb1, RBR1, OsRBR2,OsMADS29, MADS29, OsFST,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1 ,OsORC2,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
40277	25114224	Xu S., Zhu D., Zhang Q.	Predicting hybrid performance in rice using genomic best linear unbiased prediction.	Proc. Natl. Acad. Sci. U.S.A.	111(34)	12456-61	2014		
40278	24781994	Song F.S., Ni D.H., Li H., Duan Y.B., Yang Y.C., Ni J.L., Lu X.Z., Wei P.C., Li L., Yang J.B.	A novel synthetic Cry1Ab gene resists rice insect pests.	Genet. Mol. Res.	13(2)	2394-408	2014		
40279	24694754	Xia J., Yamaji N., Ma J.F.	An appropriate concentration of arginine is required for normal root growth in rice.	Plant Signal Behav	9	e28717	2014	ASL1	OsASL1, OsASL1.1, OsASL1.2, OsAL1, red1
40280	24686568	Meguro A., Sato Y.	Salicylic acid antagonizes abscisic acid inhibition of shoot growth and cell cycle progression in rice.	Sci Rep	4	4555	2014	KRP6,KRP5,KRP4,CDC2-2,CDC2-1	OsiICK4, Orysa;KRP6, OrysaICK4, Orysa;ICK4, OsKRP6,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 ,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1
40281	24908504	Kobayashi T., Nishizawa N.K.	Iron sensors and signals in response to iron deficiency.	Plant Sci.	224	36-43	2014	IDEF1,_,_	OsLFL2, LFL2, OsIDEF1,OsHRZ1, HRZ1,OsRFPH2-24, OsHRZ2, HRZ2
40282	24840826	Wang L., Zhang H.	Genomewide survey and characterization of metacaspase gene family in rice (Oryza sativa).	J. Genet.	93(1)	93-102	2014	MC5,MC1,MC4,MC8,MC2,MC3,MC7,MC6	OsMC5,OsMC1,OsMC4,OsMC8,OsMC2,OsMC3, OsSTA102,OsMC7,OsMC6
40283	24743650	He Y., Hao Q., Li W., Yan C., Yan N., Yin P.	Identification and characterization of ABA receptors in Oryza sativa.	PLoS ONE	9(4)	e95246	2014	_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL12, PYL12, OsPYL11, PYL11,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPYL7, PYL7, OsPYL12,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1
40284	24790113	Xu P., Cai W.	RAN1 is involved in plant cold resistance and development in rice (Oryza sativa).	J. Exp. Bot.	65(12)	3277-87	2014	_,_,_	OsRAN1, RAN1,OsRAN3, RAN3,OsRAN2, RAN2
40285	24809003	Wang P., Li C., Wang Y., Huang R., Sun C., Xu Z., Zhu J., Gao X., Deng X., Wang P.	Identification of a Geranylgeranyl reductase gene for chlorophyll synthesis in rice.	Springerplus	3	201	2014	LYL1	OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P
40286	24738983	Meng W., Hsiao A.S., Gao C., Jiang L., Chye M.L.	Subcellular localization of rice acyl-CoA-binding proteins (ACBPs) indicates that OsACBP6::GFP is targeted to the peroxisomes.	New Phytol.	203(2)	469-82	2014	_,_,_,_,_,_	OsACBP4, ACBP4,OsACBP2, ACBP2,OsACBP1, ACBP1,OsACBP3, ACBP3,OsACBP6, ACBP6,OsACBP5, ACBP5
40287	24723395	Shi Y., Liu X., Li R., Gao Y., Xu Z., Zhang B., Zhou Y.	Retention of OsNMD3 in the cytoplasm disturbs protein synthesis efficiency and affects plant development in rice.	J. Exp. Bot.	65(12)	3055-69	2014	_,DSG1,WFP,_	OsNMD3, NMD3,OsDSG1, DSG1,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,OsRPL10Ac1, OsL10a
40288	24748046	Tanigaki Y., Ito K., Obuchi Y., Kosaka A., Yamato K.T., Okanami M., Lehtonen M.T., Valkonen J.P., Akita M.	Physcomitrella patens has kinase-LRR R gene homologs and interacting proteins.	PLoS ONE	9(4)	e95118	2014		
40289	24687599	Li S., Wang C., Zhou L., Shou H.	Oxygen deficit alleviates phosphate overaccumulation toxicity in OsPHR2 overexpression plants.	J. Plant Res.	127(3)	433-40	2014	PHR2,IPS1,PI1,_,PAP10A,PT6,PT2,PT8	OsPHR2, Os-PHR2,OsIPS1, IPS1,OsIPS2, IPS2, OsPI1,OsSPX1, SPX1,OsPAP10a, PAP10,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPT8, PHT1-8, OsPht1;8, Pht1;8
40290	24728072	Pariasca-Tanaka J., Chin J.H., Dram? KN., Dalid C., Heuer S., Wissuwa M.	A novel allele of the P-starvation tolerance gene OsPSTOL1 from African rice (Oryza glaberrima Steud) and its distribution in the genus Oryza.	Theor. Appl. Genet.	127(6)	1387-98	2014	PSTOL1	Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
40291	24723033	Zhang B., Zhao T., Yu W., Kuang B., Yao Y., Liu T., Chen X., Zhang W., Wu A.M.	Functional conservation of the glycosyltransferase gene GT47A in the monocot rice.	J. Plant Res.	127(3)	423-32	2014	_,_	OsGT47A,OsIRX10, IRX10
40292	24777821	Shin H.Y., You M.K., Jeung J.U., Shin J.S.	OsMPK3 is a TEY-type rice MAPK in Group C and phosphorylates OsbHLH65, a transcription factor binding to the E-box element.	Plant Cell Rep.	33(8)	1343-53	2014	_,_,MAPK4	OsbHLH065, OsbHLH65,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAP3, MPK14, MPK3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
40293	24704865	Nozoye T., Tsunoda K., Nagasaka S., Bashir K., Takahashi M., Kobayashi T., Nakanishi H., Nishizawa N.K.	Rice nicotianamine synthase localizes to particular vesicles for proper function.	Plant Signal Behav	9		2014	NAS2	OsNAS2
40294	24843077	Wang S., Uddin M.I., Tanaka K., Yin L., Shi Z., Qi Y., Mano J., Matsui K., Shimomura N., Sakaki T., Deng X., Zhang S.	Maintenance of Chloroplast Structure and Function by Overexpression of the Rice MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE Gene Leads to Enhanced salt tolerance in Tobacco.	Plant Physiol.	165(3)	1144-1155	2014	_	OsMGD, MGD
40295	24820023	Gong P., He C.	Uncovering Divergence of Rice Exon Junction Complex Core Heterodimer Gene Duplication Reveals Their Essential Role in Growth, Development, and Reproduction.	Plant Physiol.	165(3)	1047-1061	2014	UDT1,_,_,_,_	Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsMAGO1, MAGO1,OsY14a, Y14a ,OsY14b, Y14b,mago, OsMAGO2, MAGO2 
40296	24884869	Wei S., Hu W., Deng X., Zhang Y., Liu X., Zhao X., Luo Q., Jin Z., Li Y., Zhou S., Sun T., Wang L., Yang G., He G.	A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.	BMC Plant Biol.	14	133	2014	_,LEA3-1,TRAB1,CDPK9,NAC6,BZIP72,NAC45,RAB16B,BZIP23,P5CS	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsCDPK9, OsCPK9, CPK9,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,ONAC045, ONAC45,rab21, OsLEA28, OsRAB16D, OsRAB16b,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1
40297	24862452	Guan Q.J., Wang L.F., Bu Q.Y., Wang Z.Y.	The rice gene OsZFP6 functions in multiple stress tolerance responses in yeast and Arabidopsis.	Plant Physiol. Biochem.	82	1-8	2014	_	OsZFP6
40298	24823923	Jiang S., Lu Y., Li K., Lin L., Zheng H., Yan F., Chen J.	Heat shock protein 70 is necessary for Rice stripe virus infection in plants.	Mol. Plant Pathol.			2014	_,_,_,_,_,CTHSP70-1,_	OsHSP70, hsp70,OsHSP70, hsp70,OsHSP70, hsp70,OsHSP70, hsp70,OsHSP70, hsp70, OsMed37_4, Med37_4 ,OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6 ,OsHSP70, hsp70
40299	24938613	Li L., Li N., Song S.F., Li Y.X., Xia X.J., Fu X.Q., Chen G.H., Deng H.F.	Cloning and characterization of the drought-resistance OsRCI2-5 gene in rice (Oryza sativa L.).	Genet. Mol. Res.	13(2)	4022-35	2014	_	OsRCI2-5
40300	24802508	Rouyi C., Baiya S., Lee S.K., Mahong B., Jeon J.S., Ketudat-Cairns JR., Ketudat-Cairns M.	Recombinant expression and characterization of the cytoplasmic rice beta-glucosidase Os1bglu4.	PLoS ONE	9(5)	e96712	2014	BGLU4	Os1bglu4, Os1Bglu4, Os1BGlu4
40301	24834920	Wang C., Li S., Ng S., Zhang B., Zhou Y., Whelan J., Wu P., Shou H.	Mutation in xyloglucan 6-xylosytransferase results in abnormal root hair development in Oryza sativa.	J. Exp. Bot.	65(15)	4149-57	2014	_,_,_,_,_,_,_	OsGT3,OsGT6,OsGT5,OsGT2,OsGT7,OsGT4,OsXXT1, SRH2
40302	24971328	Wang W., Xu M., Wang Y., Jamil M.	Basal transcription factor 3 plays an important role in seed germination and seedling growth of rice.	Biomed Res Int	2014	465739	2014	_,_,_	Osj3g2BTF3, BTF3b, Os03g2BTF3,Osj3g1BTF3, BTF3a, Os03g1BTF3,Osj10gBTF3, 10gBTF3, BTF3a
40303	24865494	Wang B., Yu J., Zhu D., Chang Y., Zhao Q.	Maize ZmRACK1 is involved in the plant response to fungal phytopathogens.	Int J Mol Sci	15(6)	9343-59	2014		
40304	24865690	Zhang D., Chen L., Li D., Lv B., Chen Y., Chen J., XuejiaoYan, Liang J.	OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.).	PLoS ONE	9(5)	e97120	2014	AMY3D,_,_,AMY1A,RBOHH,RBOHC,RACK1	Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,rbohA, OsrbohA, Os rbohA, OsRbohA, OsRboh2,OsWD40-122, OsRACK1B, RACK1B,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,rbohH, OsrbohH, Os rbohH, OsNox9, OsRboh9, Os-RbohH, RbohH ,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A
40305	24805883	Chou W.L., Huang L.F., Fang J.C., Yeh C.H., Hong C.Y., Wu S.J., Lu C.A.	Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa.	Plant Mol. Biol.	85(4-5)	443-58	2014	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsCAF1B, OsCAF1-5,OsCAF1A, CAF1A, OsCAF1-12,OsCAF1G, CAF1G, OsCAF1-13,OsCAF1H, CAF1H, OsCAF1-1,OsCAF1-10, OsCAF1C,OsCAF1-6, OsCAF1D,OsCAF1-16, OsCAF1E,OsCAF1-14, OsCAF1F,OsCAF1-15, OsCAF1I,OsCAF1-9, OsCAF1J,OsCAF1-8, OsCAF1K,OsCAF1-7, OsCAF1L,OsCAF1-17, OsCAF1M,OsCAF1-21, OsCAF1N,OsCAF1-18, OsCAF1O,OsCAF1-19, OsCAF1P,OsCAF1-2, OsCAF1Q,OsCAF1-20, OsCAF1R
40306	24915093	Do H., Kim I.S., Kim Y.S., Shin S.Y., Kim J.J., Mok J.E., Park S.I., Wi A.R., Park H., Kim H.W., Yoon H.S., Lee J.H.	Crystallization and preliminary X-ray crystallographic studies of dehydroascorbate reductase (DHAR) from Oryza sativa L. japonica.	Acta Crystallogr F Struct Biol Commun	70(Pt 6)	781-5	2014	DHAR1	OsDHAR1, DHAR, cytDHAR, OsDHAR
40307	24788752	Guevara D.R., El-Kereamy A., Yaish M.W., Mei-Bi Y., Rothstein S.J.	Functional characterization of the rice UDP-glucose 4-epimerase 1, OsUGE1: a potential role in cell wall carbohydrate partitioning during limiting nitrogen conditions.	PLoS ONE	9(5)	e96158	2014	BC6,RSUS1,BC7,_,CESA7	Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsUGE1, OsUGE-1, UGE1, UGE-1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
40308	24812252	Liu D., Sun W., Yuan Y., Zhang N., Hayward A., Liu Y., Wang Y.	Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants.	Ann. Bot.	113(7)	1219-33	2014	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsOFP26, OsOFP29,OsOFP7, OsOFP11,OsOFP13, OsOFP19, OFP13, OFP19,OsOFP4, OFP4, OsOFP06, OsOFP6, OFP6,OsOFP33,OsOFP3, OsOFP04,OsOFP15, OsOFP22,OsOFP12, OsOFP17,OsOFP23, OsOFP20,OsOFP20, OsOFP31,OsOFP31, OsOFP26, OsSTA245,OsOFP8, OsOFP12,OsOFP11, OsOFP16,OsOFP22, OsOFP05,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,OsOFP16, OsOFP24,OsOFP18, OsOFP28,OsOFP32,OsOFP5, OsOFP07,OsOFP6, OsOFP09,OsOFP27, OsOFP02,OsOFP9, OsOFP13,OsOFP29, OsOFP18,OsOFP25, OsOFP23,OsOFP17, OsOFP27,OsOFP1, OsOFP01, OFP1,OsOFP10, OsOFP14, OFP10, OFP14,OsOFP28, OsOFP25,OsOFP21, OsOFP10,OsOFP14, OsOFP21,OsOFP24, OsOFP15,OsOFP19, OsOFP30,OsOFP2, OsOFP03, OFP2
40309	24847337	Tang D., Miao C., Li Y., Wang H., Liu X., Yu H., Cheng Z.	OsRAD51C is essential for double-strand break repair in rice meiosis.	Front Plant Sci	5	167	2014	ZEP1,PAIR2,RAD51C,PAIR3,_,RAD21-4	OsZEP1,Pair2, OsPAIR2, OsASY1,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,,CRC1,OsRad21-4, REC8, OsREC8, OsRAD21-4
40310	24817585	Yadav R., Prasad R.	Identification and functional characterization of sorbitol-6-phosphate dehydrogenase protein from rice and structural elucidation by in silico approach.	Planta	240(1)	223-38	2014	_	OsM6PR1, OsM6PR2, M6PR, OsS6PDH, S6PDH
40311	24840804	Byun M.Y., Kim W.T.	Suppression of OsRAD51D results in defects in reproductive development in rice (Oryza sativa L.).	Plant J.	79(2)	256-69	2014	_,_,RAD51D,_,_	OsXRCC3,OsXRCC2,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,OsRAD51B, OsRad51B,OsRAD51C, OsRad51C
40312	24905845	Xie Y., Mao Y., Xu S., Zhou H., Duan X., Cui W., Zhang J., Xu G.	heme-heme oxygenase 1 system is involved in ammonium tolerance by regulating antioxidant defence in Oryza sativa.	Plant Cell Environ.			2014	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
40313	24616269	Zhao J., Wang T., Wang M., Liu Y., Yuan S., Gao Y., Yin L., Sun W., Peng L., Zhang W., Wan J., Li X.	DWARF3 participates in an SCF complex and associates with DWARF14 to suppress rice shoot branching.	Plant Cell Physiol.	55(6)	1096-109	2014	_,_,_,_,_,_,_,_,_,D14,_,_,D3,_	OSK10,OSK15,OSK19,,OSK1, SKP1, OsSKP1,OSK2,OSK3,OSK28,OSK21,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,OSK5,OSK6,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,OSK20
40314	24906444	Yang C., Li D., Liu X., Ji C., Hao L., Zhao X., Li X., Chen C., Cheng Z., Zhu L.	OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.).	BMC Plant Biol.	14	158	2014	CESA6,CESA11,CESA2,CESA5,CESA3,CESA1,BC7,CESA7,CEF1,CESA8,BC6,CESA10	OsCesA6, OsCESA6, OS_CESA06,OsCesA11, OsCESA11, OsCLD1, CLD1,OsCesA2, OsCESA2, OS_CESA02,OsCesA5, OsCESA5, OS_CESA05,OsCesA3, OsCESA3, OS_CESA03,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L,OsCesA8, OsCESA8, OS_CESA08, CesA8,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA10, OsCESA10
40315	24935343	Choudhury B.I., Khan M.L., Dayanandan S.	Patterns of nucleotide diversity and phenotypes of two domestication related genes (OsC1 and Wx) in indigenous rice varieties in Northeast India.	BMC Genet.	15	71	2014	C,WX1	C, Cp, OsC1, Os-C1, OsMyb6, Myb6,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
40316	25219300	Fan X., Xie D., Chen J., Lu H., Xu Y., Ma C., Xu G.	Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply.	Plant Sci.	227	1-11	2014	NRT2.2,AMT1;2,PTR6,NRT1,NRT2.1,AMT1;3,AMT1;1	OsNRT2.2, OsNRT2.1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 ,OsNRT2.1, OsNRT2.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
40317	24892523	Chujo T., Miyamoto K., Ogawa S., Masuda Y., Shimizu T., Kishi-Kaboshi M., Takahashi A., Nishizawa Y., Minami E., Nojiri H., Yamane H., Okada K.	Overexpression of phosphomimic mutated OsWRKY53 leads to enhanced blast resistance in rice.	PLoS ONE	9(6)	e98737	2014	SMG1,MPK6,WRKY53,MSRMK2	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsMPK6, OsDR6, OsMPK4,OsWRKY53, WRKY-53,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
40318	24970010	Kanwar P., Sanyal S.K., Tokas I., Yadav A.K., Pandey A., Kapoor S., Pandey G.K.	Comprehensive structural, interaction and expression analysis of CBL and CIPK complement during abiotic stresses and development in rice.	Cell Calcium	56(2)	81-95	2014	CIPK32,CIPK21,CBL9,CIPK18,CIPK04,CIPK07,CIPK20,CIPK08,CIPK28,CBL1,CBL2,CBL3,CBL5,CBL8,CIPK02,CIPK10,CIPK11,CIPK13,CIPK17,CIPK27,CIPK29,CK1,CBL6,CBL10,CIPK24,CIPK33,CIPK01,CIPK15,CIPK14,PK4,CIPK05,CIPK30,CIPK25,CIPK26,CIPK09,CBL7,CIPK23,CIPK06,CIPK16,CIPK03,CBL4,PK7,CIPK22	OsCIPK32,OsCIPK21,OsCBL9,OsCIPK18,OsCIPK04, CIPK4, OsCIPK4,OsCIPK07, CIPK7, OsCIPK7,OsCIPK20,OsCIPK08, CIPK8, OsCIPK8,OsCIPK28,OsCBL1, Os-CBL1,OsCBL2,OsCBL3,OsCBL5,OsCBL8,OsCIPK02, CIPK2, OsCIPK2,OsCIPK10, CIPK10, OsCIPK10,OsCIPK11, CIPK11, OsMSURPK2, OsCIPK11,OsCIPK13,OsCIPK17,OsCIPK27,OsCIPK29,OsCK1, CIPK31, OsCIPK31, Os-CIPK3,OsCBL6,OsCBL10,OsCIPK24, SOS2, OsSOS2,OsCIPK33,OsCIPK01, CIPK1, OsCIPK1,OsCIPK15,OsCIPK14,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19,OsCIPK05, CIPK5, OsCIPK5, OsSTA7,OsCIPK30,OsCIPK25,OsCIPK26,OsCIPK09, CIPK9, OsCIPK9,OsCBL7,OsCIPK23, Os-CIPK23,OsCIPK06, CIPK6, OsCIPK6 ,OsCIPK16,OsCIPK03, CIPK3, OsCIPK3,OsCBL4, SOS3, OsSOS3,OsPK7, OsPK07, OsCIPK12, CIPK12,OsCIPK22
40319	24932524	Deng X.J., Zhang H.Q., Wang Y., He F., Liu J.L., Xiao X., Shu Z.F., Li W., Wang G.H., Wang G.L.	Mapped clone and functional analysis of leaf-color gene ygl7 in a rice hybrid (Oryza sativa L. ssp. indica).	PLoS ONE	9(6)	e99564	2014	PSBA,CAB2R,FGL,YGL1,ELL,CAB1R,PSAA,_,YGL98	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsYGL1, CHLG, Ygl1, CS, OsCHLG,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,PsaA, psaA, PsAA1,OsChlH, ChlH, CHLH, OsCHLH,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3
40320	24912543	Wen F., Qin T., Wang Y., Dong W., Zhang A., Tan M., Jiang M.	OsHK3 is a crucial regulator of abscisic acid signaling involved in antioxidant defense in rice.	J Integr Plant Biol			2014	RBOHE,DMI3,MAPK6,RBOHB,HK3	rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,OHK2, HK, OsHK3, Ohk, Crl2, Ohk2, OsHK3b
40321	25014258	Endo A., Nelson K.M., Thoms K., Abrams S.R., Nambara E., Sato Y.	Functional characterization of xanthoxin dehydrogenase in rice.	J. Plant Physiol.	171(14)	1231-40	2014	_	OsABA2, ABA2
40322	24901798	Che L., Wang K., Tang D., Liu Q., Chen X., Li Y., Hu Q., Shen Y., Yu H., Gu M., Cheng Z.	OsHUS1 facilitates accurate meiotic recombination in rice.	PLoS Genet.	10(6)	e1004405	2014	ZEP1,_,_,COM1,RAD51C,RMC1,PAIR1	OsZEP1,HEI10, HEI10A, HEI10B, OsHEI10,OsHUS1, HUS1 ,OsCOM1,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,Pair1
40323	24901230	Takahashi R., Ishimaru Y., Shimo H., Bashir K., Senoura T., Sugimoto K., Ono K., Suzui N., Kawachi N., Ishii S., Yin Y.G., Fujimaki S., Yano M., Nishizawa N.K., Nakanishi H.	From laboratory to field: OsNRAMP5-knockdown rice is a promising candidate for Cd phytoremediation in paddy fields.	PLoS ONE	9(6)	e98816	2014	IRT2,NRAMP1,NRAMP5,IRT1	OsIRT2, OsIRT1,OsNramp1, OsNRAMP1, OsNramp6,OsNRAMP5, OsNramp5,OsIRT1
40324	25288999	Yoo S.J., Kim S.H., Kim M.J., Ryu C.M., Kim Y.C., Cho B.H., Yang K.Y.	Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice.	Plant Pathol. J.	30(2)	168-77	2014	SMG1,MAPK6,WRKY53	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsWRKY53, WRKY-53
40325	24926784	Meng W., Chye M.L.	Rice acyl-CoA-binding proteins OsACBP4 and OsACBP5 are differentially localized in the endoplasmic reticulum of transgenic Arabidopsis.	Plant Signal Behav	9		2014	_,_	OsACBP4, ACBP4,OsACBP5, ACBP5
40326	24958714	Matsui H., Fujiwara M., Hamada S., Shimamoto K., Nomura Y., Nakagami H., Takahashi A., Hirochika H.	Plasma membrane localization is essential for Oryza sativa Pto-interacting protein 1a-mediated negative regulation of immune signaling in rice.	Plant Physiol.	166(1)	327-36	2014	RLCK178	OsPti1a, OsRLCK178
40327	25089296	Huang X., Duan M., Liao J., Yuan X., Chen H., Feng J., Huang J., Zhang H.S.	OsSLI1, a homeodomain containing transcription activator, involves abscisic acid related stress response in rice (Oryza sativa L.).	ScientificWorldJournal	2014	809353	2014	HOX24,BZIP46	Oshox24, OsHox24, OsSLI1,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46
40328	24940877	Roy D., Paul A., Roy A., Ghosh R., Ganguly P., Chaudhuri S.	Differential acetylation of histone H3 at the regulatory region of OsDREB1b promoter facilitates chromatin remodelling and transcription activation during cold stress.	PLoS ONE	9(6)	e100343	2014	DREB1B	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C
40329	25017161	Tyagi H., Jha S., Sharma M., Giri J., Tyagi A.K.	Rice SAPs are responsive to multiple biotic stresses and overexpression of OsSAP1, an A20/AN1 zinc-finger protein, enhances the basal resistance against pathogen infection in tobacco.	Plant Sci.	225	68-76	2014	SAP13,SAP6,SAP16,SAP2,SAP3,SAP4,SAP14,SAP5,SAP15,SAP17,SAP10,SAP12,SAP18,ZFP177,SAP8,SAP7,SAP11,SAP1	OsSAP13,OsSAP6,OsSAP16,OsSAP2,OsSAP3,OsSAP4,OsSAP14,OsSAP5,OsSAP15,OsSAP17,OsSAP10,OsSAP12,OsSAP18,OsSAP9, SAP9, ZFP33,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsSAP7, OsiSAP7,OsDOG, OsSAP11, DOG,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1
40330	24813725	Yang W.T., Baek D., Yun D.J., Hwang W.H., Park D.S., Nam M.H., Chung E.S., Chung Y.S., Yi Y.B., Kim D.H.	Overexpression of OsMYB4P, an R2R3-type MYB transcriptional activator, increases phosphate acquisition in rice.	Plant Physiol. Biochem.	80	259-67	2014	PT4,PT8,PT7,PT2,_,PT1	OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPT7, PHT1-7, OsPht1;7,OsPT2, PTH1-2, OsPht1;2, PHT1;2,R2R3-MYB, OsMYB4P,OsPT1, PHT1-1, OsPht1;1, Pht1;1
40331	25071223	Zhang H., Liu Y., Wen F., Yao D., Wang L., Guo J., Ni L., Zhang A., Tan M., Jiang M.	A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.	J. Exp. Bot.	65(20)	5795-809	2014	APX2,_,MSRMK2,RBOHB,RBOHE,MPK7,BSRD1,SODCC1,MAPK4,MAPK6	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsMPK14, MPK14,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, bsr-d1 ,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6
40332	25037719	Li Q., Zhu F.Y., Gao X., Sun Y., Li S., Tao Y., Lo C., Liu H.	Young leaf chlorosis 2 encodes the stroma-localized heme oxygenase 2 which is required for normal tetrapyrrole biosynthesis in rice.	Planta	240(4)	701-12	2014	YLC2	OsHO2, HO2, OsHO-2, HO-2
40333	25036785	Cai Y., Chen X., Xie K., Xing Q., Wu Y., Li J., Du C., Sun Z., Guo Z.	Dlf1, a WRKY transcription factor, is involved in the control of flowering time and plant height in rice.	PLoS ONE	9(7)	e102529	2014	WRKY11,EHD2/RID1,EF1,HD3A,SE1	OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
40334	25001222	Wang Y., Xu M.Y., Liu J.P., Wang M.G., Yin H.Q., Tu J.M.	Molecular identification and interaction assay of the gene (OsUbc13) encoding a ubiquitin-conjugating enzyme in rice.	J Zhejiang Univ Sci B	15(7)	624-37	2014	_,_,MT2B,LHS1,_	OsUbc13, Ubc13, OsUBC47, UBC47,OSVDAC1, osvdac1, OsVDAC1, VDAC1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsCROC-1, CROC-1, CROC1, OsCROC1, OsUEV1B, UEV1B
40335	24995795	Zhang S., Wang S., Xu Y., Yu C., Shen C., Qian Q., Geisler M., Jiang D.A., Qi Y.	The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.	Plant Cell Environ.			2014	ARF7A,JAR1,D61	OsARF7a, OsARF19, ARF19, OsARF7,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
40336	25081037	Han M., Kim C.Y., Lee J., Lee S.K., Jeon J.S.	OsWRKY42 represses OsMT1d and induces reactive oxygen species and leaf senescence in rice.	Mol. Cells	37(7)	532-9	2014	MT1F,MT1G,MTI4C,WRKY42	OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,OsMT1g, MT1g, MT1Le, OsMT1Le ,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsWRKY42, WRKY-42
40337	24980160	Li J., Xu R.F., Qin R.Y., Ma H., Li H., Zhang Y.P., Li L., Wei P.C., Yang J.B.	Isolation and functional characterization of a novel rice constitutive promoter.	Plant Cell Rep.	33(10)	1651-60	2014	DHAR1	OsDHAR1, DHAR, cytDHAR, OsDHAR
40338	25052102	Liu D., Wang W., Cai X.	Modulation of amylose content by structure-based modification of OsGBSS1 activity in rice (Oryza sativa L.).	Plant Biotechnol. J.			2014	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
40339	25089878	He D., Zhang H., Yang P.	The mitochondrion-located protein OsB12D1 enhances flooding tolerance during seed germination and early seedling growth in rice.	Int J Mol Sci	15(8)	13461-81	2014	_,_,_,_,_,_	OsB12D1,,,,,OsEnS-48
40340	25079308	Peng Y., Gao Z., Zhang B., Liu C., Xu J., Ruan B., Hu J., Dong G., Guo L., Liang G., Qian Q.	Fine mapping and candidate gene analysis of a major QTL for panicle structure in rice.	Plant Cell Rep.	33(11)	1843-50	2014	APO1,WFP,D14,DST,GN1A	apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,OsDST,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
40341	24985152	Ranjan A., Dickopf S., Ullrich K.K., Rensing S.A., Hoecker U.	Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation.	BMC Plant Biol.	14	178	2014	_,_,_,PPS	OsWD40-123, OsSPA1,OsWD40-34, OsRUP,OsWD40-24, OsSPA3/4,OsWD40-55, OsCOP1, COP1
40342	24989161	Shih M.C., Chou M.L., Yue J.J., Hsu C.T., Chang W.J., Ko S.S., Liao D.C., Huang Y.T., Chen J.J., Yuan J.L., Gu X.P., Lin C.S.	BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development.	BMC Plant Biol.	14	179	2014		
40343	25002225	Hsu K.H., Liu C.C., Wu S.J., Kuo Y.Y., Lu C.A., Wu C.R., Lian P.J., Hong C.Y., Ke Y.T., Huang J.H., Yeh C.H.	Expression of a gene encoding a rice RING zinc-finger protein, osrzfp34, enhances stomata opening.	Plant Mol. Biol.	86(1-2)	125-37	2014	_	OsRZFP34, OsRFP1, RZFP34, RFP1
40344	24923192	Yoon J., Cho L.H., Kim S.L., Choi H., Koh H.J., An G.	The BEL1-type homeobox gene SH5 induces Seed shattering by enhancing abscission-zone development and inhibiting lignin biosynthesis.	Plant J.	79(5)	717-28	2014	SHAT1,SH5,SH4	SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5,,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23
40345	24947012	Takahashi S., Teranishi M., Izumi M., Takahashi M., Takahashi F., Hidema J.	Transport of rice cyclobutane pyrimidine dimer photolyase into mitochondria relies on a targeting sequence located in its C-terminal internal region.	Plant J.	79(6)	951-63	2014	_	qUVR-10, OsPHR, OsCPD, CPD
40346	25157897	Miyamoto K., Matsumoto T., Okada A., Komiyama K., Chujo T., Yoshikawa H., Nojiri H., Yamane H., Okada K.	Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells.	PLoS ONE	9(8)	e105823	2014	_,DLT,PLDbeta1,_,OC1,WRKY76,DXS3,BIF2,BZIP37	,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsPLDbeta1,,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsDXS, OsDXS3, dxs3,bif2, Osbif2, OsBIF2, OsPID, PID,OsTGAP1, TGAP1, OsbZIP37
40347	25157029	Yang T., Zhang S., Hu Y., Wu F., Hu Q., Chen G., Cai J., Wu T., Moran N., Yu L., Xu G.	The Role of a Potassium Transporter OsHAK5 in Potassium Acquisition and Transport from Roots to Shoots in Rice at Low Potassium Supply Levels.	Plant Physiol.	166(2)	945-59	2014	HAK5	OsHAK5, FCO13, OsFCO13
40348	25219319	Wang F., Jing W., Zhang W.	The mitogen-activated protein kinase cascade MKK1-MPK4 mediates salt signaling in rice.	Plant Sci.	227	181-9	2014	_,MKK1,MPK6,ERF42	OsMYBS3, MYBS3,OsMKK1, OsMEK2,OsMPK6, OsDR6, OsMPK4,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A
40349	25107532	Sawada T., Nakamura Y., Ohdan T., Saitoh A., Francisco P.B., Suzuki E., Fujita N., Shimonaga T., Fujiwara S., Tsuzuki M., Colleoni C., Ball S.	Diversity of reaction characteristics of glucan branching enzymes and the fine structure of alpha-glucan from various sources.	Arch. Biochem. Biophys.	562	9-21	2014	SBE1,SBE4,SBE3	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
40350	25150410	Tang W., Sun J., Liu J., Liu F., Yan J., Gou X., Lu B.R., Liu Y.	RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa).	Plant Mol. Biol.	86(4-5)	443-54	2014	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
40351	25128531	Kosami K., Ohki I., Nagano M., Furuita K., Sugiki T., Kawano Y., Kawasaki T., Fujiwara T., Nakagawa A., Shimamoto K., Kojima C.	The Crystal Structure of the plant small GTPase OsRac1 Reveals Its Mode of Binding to NADPH Oxidase.	J. Biol. Chem.	289(41)	28569-78	2014	RAC1,RBOHB	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB 
40352	25113543	Zhang H., Jin X., Huang L., Hong Y., Zhang Y., Ouyang Z., Li X., Song F., Li D.	Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.	Plant Cell Rep.	33(10)	1745-56	2014	_	OsSPL, OsSPL1
40353	25039836	Ghosh A., Pareek A., Sopory S.K., Singla-Pareek SL.	A glutathione responsive rice Glyoxalase II, OsGLYII-2, functions in salinity adaptation by maintaining better photosynthesis efficiency and anti-oxidant pool.	Plant J.	80(1)	93-105	2014	GLYII-2	OsGLYII2, GLYII2, OsGLYII-2
40354	25173451	Park S., Moon J.C., Park Y.C., Kim J.H., Kim D.S., Jang C.S.	Molecular dissection of the response of a rice leucine-rich repeat receptor-like kinase (LRR-RLK) gene to abiotic stresses.	J. Plant Physiol.	171(17)	1645-53	2014	_,_,_,_,RLCK25,_	,OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3,,,OsRLCK25,
40355	25219312	Baiya S., Hua Y., Ekkhara W., Ketudat Cairns JR.	Expression and enzymatic properties of rice (Oryza sativa L.) monolignol beta-glucosidases.	Plant Sci.	227	101-9	2014	BGLU16,BGLU14,BGLU18	Os4bglu16, Os4Bglu16, Os4BGlu16,Os4bglu14, Os4Bglu14, Os4BGlu14,Os4bglu18, Os4Bglu18, Os4BGlu18
40356	25195901	Do H., Kim I.S., Kim Y.S., Shin S.Y., Kim J.J., Mok J.E., Park S.I., Wi A.R., Park H., Lee J.H., Yoon H.S., Kim H.W.	Purification, characterization and preliminary X-ray crystallographic studies of Monodehydroascorbate reductase from Oryza sativa L. japonica.	Acta Crystallogr F Struct Biol Commun	70(Pt 9)	1244-8	2014	_	MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR3, MDHAR1, OsMDHAR1
40357	25151129	Heo J.B., Lee Y.M., Yun H.R., Im C.H., Lee Y.S., Yi Y.B., Kwon C., Lim J., Bahk J.D.	Rice serine/threonine kinase 1 is required for the stimulation of OsNug2 GTPase activity.	J. Plant Physiol.	171(17)	1601-8	2014	_,_	OsNug2,OsSTK1
40358	25096923	Nayar S., Kapoor M., Kapoor S.	Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.	J. Exp. Bot.	65(18)	5339-50	2014	RAG,FST ,PAP2,MADS56,MADS22,MADS24,MADS7,MADS33,MADS31,MADS18,MADS25,MADS17,MADS51,MADS66,MFO1,RAP1B,MADS5,MADS26,LHS1,MADS55	MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsMADS29, MADS29, OsFST,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OsMADS56, FDRMADS8, RMADS214,OsMADS22, RMD1,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS33,OsMADS31,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsMADS25,OsMADS17, NMADS3, RMADS213, nmads3,OsMADS51, OsMADS65, MADS65,OsMADS66,OsMADS6, MADS6, OsMFO1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS5, FDRMADS2,OsMADS26, FDRMADS3, RMADS220,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsMADS55
40359	25103621	Wang H., Zhu X., Li H., Cui J., Liu C., Chen X., Zhang W.	Induction of caspase-3-like activity in rice following release of cytochrome-f from the chloroplast and subsequent interaction with the ubiquitin-proteasome system.	Sci Rep	4	5989	2014	PETA,_	petA, Cytf, cytF, Cyt f,OsNuc37
40360	25099245	Fu K., Cheng Q., Liu Z., Chen Z., Wang Y., Ruan H., Zhou L., Xiong J., Xiao R., Liu S., Zhang Q., Yang D.	Immunotoxicity assessment of rice-derived recombinant Human serum albumin using human peripheral blood mononuclear cells.	PLoS ONE	9(8)	e104426	2014		
40361	25098603	Hwang J.E., Ahn J.W., Kwon S.J., Kim J.B., Kim S.H., Kang S.Y., Kim D.S.	Selection and molecular characterization of a high tocopherol accumulation rice mutant line induced by gamma irradiation.	Mol. Biol. Rep.	41(11)	7671-81	2014	_,_,_,_,_,_,_	OsHPPD, HPPD, Osl30, l30,OsVTE3,OsVTE5,OsVTE2, VTE2, SGD1, RTD1, OsHPT, HPT ,OsVTE1,OsVTE4, OsgammaTMT, gammaTMT,OsHGGT, HGGT, OsHST
40362	25151617	Sasaki A., Yamaji N., Ma J.F.	Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice.	J. Exp. Bot.	65(20)	6013-21	2014	ZIP8,ZIP4,GCC7,_,_,ZIP5	OsZIP8, OsZIP1,OsZIP4,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3,OsZIP9, ZIP9,OsZIP10, ZIP10,OsZIP5, OsZIP8, ZIP8, OsZIP9
40363	25146897	Lee S.H., Sakuraba Y., Lee T., Kim K.W., An G., Lee H.Y., Paek N.C.	Mutation of Oryza sativa CORONATINE INSENSITIVE 1b (OsCOI1b) delays leaf senescence.	J Integr Plant Biol			2014	D3,_,_,_,_,ABI5,EIL1,_,NAC2,_,_,BZIP62,ERF3,_,_,NYC1	d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,OsVSP2,OsPAO, PAO,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsS3H, S3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a,OsCOI2,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsPDF1.2, DEFL6, OsDEFL6, OsDf-06, Df-06,OsbZIP62, OsABF8, OsEEL, EEL,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,ICS1, OsICS1, OsICS, ICS,OsSAG12, SAG12,nyc1, OsNYC1
40364	24759811	Yokoo T., Saito H., Yoshitake Y., Xu Q., Asami T., Tsukiyama T., Teraishi M., Okumoto Y., Tanisaka T.	Se14, encoding a JmjC domain-containing protein, plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.	PLoS ONE	9(4)	e96064	2014		
40365	24743656	Venu R.C., Ma J., Jia Y., Liu G., Jia M.H., Nobuta K., Sreerekha M.V., Moldenhauer K., McClung A.M., Meyers B.C., Wang G.L.	Identification of candidate genes associated with positive and negative heterosis in rice.	PLoS ONE	9(4)	e95178	2014		
40366	24760072	Baloglu M.C., Eldem V., Hajyzadeh M., Unver T.	Genome-wide analysis of the bZIP transcription factors in cucumber.	PLoS ONE	9(4)	e96014	2014		
40367	24759881	Winkel A., Pedersen O., Ella E., Ismail A.M., Colmer T.D.	Gas film retention and underwater photosynthesis during field submergence of four contrasting rice genotypes.	J. Exp. Bot.	65(12)	3225-33	2014		
40368	24840818	Rathi S., Pathak K., Yadav R.N., Kumar B., Sarma R.N.	Association studies of dormancy and cooking quality traits in direct-seeded indica rice.	J. Genet.	93(1)	3-12	2014		
40369	24840849	Fasahat P., Rahman S., Ratnam W.	Genetic controls on starch amylose content in wheat and rice grains.	J. Genet.	93(1)	279-92	2014		
40370	24747952	Tuncel A., Kawaguchi J., Ihara Y., Matsusaka H., Nishi A., Nakamura T., Kuhara S., Hirakawa H., Nakamura Y., Cakir B., Nagamine A., Okita T.W., Hwang S.K., Satoh H.	The rice endosperm ADP-glucose pyrophosphorylase large subunit is essential for optimal catalysis and allosteric regulation of the heterotetrameric enzyme.	Plant Cell Physiol.	55(6)	1169-83	2014	AGPL2,AGPS2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b
40371	24729002	Muehe E.M., Eisele J.F., Daus B., Kappler A., Harter K., Chaban C.	Are rice (Oryza sativa L.) phosphate transporters regulated similarly by phosphate and arsenate? A comprehensive study.	Plant Mol. Biol.	85(3)	301-16	2014		
40372	24833511	Gill N., Buti M., Kane N., Bellec A., Helmstetter N., Berges H., Rieseberg L.H.	Sequence-Based Analysis of Structural Organization and Composition of the Cultivated Sunflower (Helianthus annuus L.) Genome.	Biology (Basel)	3(2)	295-319	2014		
40373	24760819	Iwakami S., Endo M., Saika H., Okuno J., Nakamura N., Yokoyama M., Watanabe H., Toki S., Uchino A., Inamura T.	cytochrome P450 CYP81A12 and CYP81A21 Are Associated with Resistance to Two acetolactate synthase Inhibitors in Echinochloa phyllopogon.	Plant Physiol.	165(2)	618-629	2014		
40374	24690462	Sabot F.	Tos17 rice element: incomplete but effective.	Mob DNA	5(1)	10	2014		
40375	24750781	Liu B., Wang L., Zhang J., Li J., Zheng H., Chen J., Lu M.	WUSCHEL-related Homeobox genes in Populus tomentosa: diversified expression patterns and a functional similarity in adventitious root formation.	BMC Genomics	15	296	2014		
40376	25007618	Zhou L.N., Yu H.Y., Zhang L., Ren S., Sui Y.Y., Yu L.J.	[Rice blast prediction model based on analysis of chlorophyll fluorescence spectrum].	Guang Pu Xue Yu Guang Pu Fen Xi	34(4)	1003-6	2014		
40377	24790111	Zhang Y., Zhang X., Liu B., Wang W., Liu X., Chen C., Liu X., Yang S., Ren H.	A GAMYB homologue CsGAMYB1 regulates sex expression of cucumber via an ethylene-independent pathway.	J. Exp. Bot.	65(12)	3201-13	2014		
40378	24742282	Wakasa Y., Oono Y., Yazawa T., Hayashi S., Ozawa K., Handa H., Matsumoto T., Takaiwa F.	RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions.	BMC Plant Biol.	14	101	2014		
40379	24920970	Ishihara T., Hayano-Saito Y., Oide S., Ebana K., La N.T., Hayashi K., Ashizawa T., Suzuki F., Koizumi S.	Quantitative trait locus analysis of resistance to panicle blast in the rice cultivar Miyazakimochi.	Rice (N Y)	7(1)	2	2014		
40380	24734873	Han R., Jian C., Lv J., Yan Y., Chi Q., Li Z., Wang Q., Zhang J., Liu X., Zhao H.	Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.).	BMC Genomics	15	289	2014		
40381	24787501	Kim Y., Wang M., Bai Y., Zeng Z., Guo F., Han N., Bian H., Wang J., Pan J., Zhu M.	Bcl-2 suppresses activation of VPEs by inhibiting cytosolic Ca?? level with elevated K? efflux in NaCl-induced PCD in rice.	Plant Physiol. Biochem.	80	168-75	2014		
40382	24780396	Park C.J., Song M.Y., Kim C.Y., Jeon J.S., Ronald P.C.	Rice BiP3 regulates immunity mediated by the PRRs XA3 and XA21 but not immunity mediated by the NB-LRR protein, Pi5.	Biochem. Biophys. Res. Commun.	448(1)	70-5	2014		
40383	25036957	Fukayama H., Fujiwara N., Hatanaka T., Misoo S., Miyao M.	Nocturnal phosphorylation of phosphoenolpyruvate carboxylase in the leaves of hygrophytic C3 monocots.	Biosci. Biotechnol. Biochem.	78(4)	609-13	2014		
40384	24755044	Song G., Guo Z., Liu Z., Qu X., Jiang D., Wang W., Zhu Y., Yang D.	The phenotypic predisposition of the parent in F1 hybrid is correlated with transcriptome preference of the positive general combining ability parent.	BMC Genomics	15	297	2014		
40385	24908511	Matsuda S., Nagasawa H., Yamashiro N., Yasuno N., Watanabe T., Kitazawa H., Takano S., Tokuji Y., Tani M., Takamure I., Kato K.	Rice RCN1/OsABCG5 mutation alters accumulation of essential and nonessential minerals and causes a high Na/K ratio, resulting in a salt-sensitive phenotype.	Plant Sci.	224	103-11	2014		
40386	24757324	Jha Y., Subramanian R.B.	PGPR regulate caspase-like activity, programmed cell death, and antioxidant enzyme activity in paddy under salinity.	Physiol Mol Biol Plants	20(2)	201-7	2014		
40387	24946604	Wang W.M., Deng Y., Zou H., Liang C.J.	[Effects of microcystins on growth and antioxidant system of rice roots].	Huan Jing Ke Xue	35(4)	1468-72	2014		
40388	24715026	Wang C., Fan Y., Zheng C., Qin T., Zhang X., Zhao K.	High-resolution genetic mapping of rice bacterial blight resistance gene Xa23.	Mol. Genet. Genomics	289(5)	745-53	2014		
40389	25202619	Gostel M.R., Weeks A.	Development of novel, exon-primed intron-crossing (EPIC) markers from EST databases and evaluation of their phylogenetic utility in Commiphora (Burseraceae).	Appl Plant Sci	2(4)		2014		
40390	24977183	Duan M., Huang P., Yuan X., Chen H., Huang J., Zhang H.	CMYB1 encoding a MYB transcriptional activator is involved in abiotic stress and circadian rhythm in rice.	ScientificWorldJournal	2014	178038	2014		
40391	24728538	Tang H., Luo D., Zhou D., Zhang Q., Tian D., Zheng X., Chen L., Liu Y.G.	The rice restorer Rf4 for wild-abortive cytoplasmic male sterility encodes a mitochondrial-localized PPR protein that functions in reduction of WA352 transcripts.	Mol Plant	7(9)	1497-500	2014	_,_,_,_,_,_,_,_,_	PPR762, PPR4, PPR4-762,PPR1, PPR1-454,Rf4, Rf-4, PPR782a, PPR9, PPR3,PPR454, PPR10, PPR2,PPR794, PPR6, PPR6-794, PPR5,PPR683, PPR5, PPR5-683,WA352,PPR458, PPR7, PPR4,PPR8
40392	24814750	Sheoran I.S., Koonjul P., Attieh J., Saini H.S.	Water-stress-induced inhibition of alpha-tubulin gene expression during growth, and its implications for reproductive success in rice.	Plant Physiol. Biochem.	80	291-9	2014		
40393	24755305	Bund? M., Montesinos L., Izquierdo E., Campo S., Mieulet D., Guiderdoni E., Rossignol M., Badosa E., Montesinos E., San Segundo B., Coca M.	Production of Cecropin A antimicrobial peptide in rice seed endosperm.	BMC Plant Biol.	14	102	2014		
40394	24691571	Chen D., Chen H., Zhang L., Shi X., Chen X.	Tocopherol-deficient rice plants display increased sensitivity to photooxidative stress.	Planta	239(6)	1351-62	2014		
40395	24763607	Jhanji S., Sadana U.S.	Genotypic variation in partitioning of dry matter and manganese between source and sink organs of rice under manganese stress.	Plant Cell Rep.	33(8)	1227-38	2014		
40396	25076839	Hsu Y.C., Tseng M.C., Wu Y.P., Lin M.Y., Wei F.J., Hwu K.K., Hsing Y.I., Lin Y.R.	Genetic factors responsible for eating and cooking qualities of rice grains in a recombinant inbred population of an inter-subspecific cross.	Mol. Breed.	34	655-673	2014		
40397	24714629	Hyodo K., Kaido M., Okuno T.	Traffic jam on the cellular secretory pathway generated by a replication protein from a plant RNA virus.	Plant Signal Behav	9	e28644	2014		
40398	24794197	Roodgar Nashta M., Shahpiri A., Mohammad Beigi M.	Substitution of Thr(55) by Gly and Lys(48) by Asp in OsTrx20 using site-directed mutagenesis.	Int. J. Biol. Macromol.	68	185-8	2014		
40399	24752581	Xie X., Chen Z., Cao J., Guan H., Lin D., Li C., Lan T., Duan Y., Mao D., Wu W.	Toward the positional cloning of qBlsr5a, a QTL underlying resistance to bacterial leaf streak, using overlapping sub-CSSLs in rice.	PLoS ONE	9(4)	e95751	2014		
40400	24752795	Mostofa M.G., Seraj Z.I., Fujita M.	Exogenous sodium nitroprusside and glutathione alleviate copper toxicity by reducing copper uptake and oxidative damage in rice (Oryza sativa L.) seedlings.	Protoplasma	251(6)	1373-86	2014		
40401	24771143	Li Q., Tang Z., Hu Y., Yu L., Liu Z., Xu G.	Functional analyses of a putative plasma membrane Na+/H+ antiporter gene isolated from salt tolerant Helianthus tuberosus.	Mol. Biol. Rep.	41(8)	5097-108	2014		
40402	24777609	Van Eck L., Davidson R.M., Wu S., Zhao B.Y., Botha A.M., Leach J.E., Lapitan N.L.	The transcriptional network of WRKY53 in cereals links oxidative responses to biotic and abiotic stress inputs.	Funct. Integr. Genomics	14(2)	351-62	2014		
40403	24738738	Baba-Kasai A., Hara N., Takano M.	Tissue-specific and light-dependent regulation of phytochrome gene expression in rice.	Plant Cell Environ.			2014		
40404	24811675	Nath S., Panda P., Mishra S., Dey M., Choudhury S., Sahoo L., Panda S.K.	Arsenic stress in rice: redox consequences and regulation by iron.	Plant Physiol. Biochem.	80	203-10	2014		
40405	24908500	Nakamura Y., Aihara S., Crofts N., Sawada T., Fujita N.	In vitro studies of enzymatic properties of starch synthases and interactions between starch synthase I and starch branching enzymes from rice.	Plant Sci.	224	1-8	2014		
40406	24748226	Zhang N., Yang J., Wang Z., Wen Y., Wang J., He W., Liu B., Si H., Wang D.	Identification of novel and conserved microRNAs related to drought stress in potato by deep sequencing.	PLoS ONE	9(4)	e95489	2014		
40407	24715609	Diao Y., Xu H., Li G., Yu A., Yu X., Hu W., Zheng X., Li S., Wang Y., Hu Z.	Cloning a glutathione peroxidase gene from Nelumbo nucifera and enhanced salt tolerance by overexpressing in rice.	Mol. Biol. Rep.	41(8)	4919-27	2014		
40408	24743556	Bao A., Zhao Z., Ding G., Shi L., Xu F., Cai H.	Accumulated expression level of cytosolic glutamine synthetase 1 gene (OsGS1;1 or OsGS1;2) alter plant development and the carbon-nitrogen metabolic status in rice.	PLoS ONE	9(4)	e95581	2014	GLN1;2,GLN1;1	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1
40409	24718783	Cai C., Zhang X., Niu E., Zhao L., Li N., Wang L., Ding L., Guo W.	GhPSY, a Phytoene synthase gene, is related to the red plant phenotype in upland cotton (Gossypium hirsutum L.).	Mol. Biol. Rep.	41(8)	4941-52	2014		
40410	24821718	Tan J., Tan Z., Wu F., Sheng P., Heng Y., Wang X., Ren Y., Wang J., Guo X., Zhang X., Cheng Z., Jiang L., Liu X., Wang H., Wan J.	A novel chloroplast-localized pentatricopeptide repeat protein involved in splicing affects chloroplast development and abiotic stress response in rice.	Mol Plant	7(8)	1329-49	2014	WSL,RPL2	,rpl2
40411	24841201	Kawano Y., Fujiwara T., Yao A., Housen Y., Hayashi K., Shimamoto K.	Palmitoylation-dependent membrane localization of the rice resistance protein Pit is critical for the activation of the small GTPase OsRac1.	J. Biol. Chem.	289(27)	19079-88	2014		
40412	24844783	Maejima E., Watanabe T.	Proportion of phospholipids in the plasma membrane is an important factor in Al tolerance.	Plant Signal Behav	9		2014		
40413	25036830	Kamimura M., Han Y., Kito N., Che F.S.	Identification of interacting proteins for calcium-dependent protein kinase 8 by a novel screening system based on bimolecular fluorescence complementation.	Biosci. Biotechnol. Biochem.	78(3)	438-47	2014		
40414	24808099	Gao S., Fang J., Xu F., Wang W., Sun X., Chu J., Cai B., Feng Y., Chu C.	CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice crown root Formation.	Plant Physiol.	165(3)	1035-1046	2014		
40415	25055694	Wang S.L., Zhang Y.X., Liu H.Z., Xin H.	[Phytotoxicity of copper oxide nanoparticles to metabolic activity in the roots of rice].	Huan Jing Ke Xue	35(5)	1968-73	2014		
40416	24792034	Huang J., Cai M., Long Q., Liu L., Lin Q., Jiang L., Chen S., Wan J.	OsLOX2, a rice type I lipoxygenase, confers opposite effects on seed germination and longevity.	Transgenic Res.	23(4)	643-55	2014		
40417	24808924	Gu K., Mao H., Yin Z.	Production of marker-free transgenic Jatropha curcas expressing hybrid Bacillus thuringiensis delta-endotoxin Cry1Ab/1Ac for resistance to larvae of tortrix moth (Archips micaceanus).	Biotechnol Biofuels	7	68	2014		
40418	24886269	Liu X., Zhou X., Li Y., Tian J., Zhang Q., Li S., Wang L., Zhao J., Chen R., Fan Y.	Identification and functional characterization of bidirectional gene pairs and their intergenic regions in maize.	BMC Genomics	15	338	2014		
40419	24817160	Zhao Y., Ma Q., Jin X., Peng X., Liu J., Deng L., Yan H., Sheng L., Jiang H., Cheng B.	A novel Maize homeodomain-leucine zipper (HD-Zip) I gene, Zmhdz10, positively regulates drought and salt tolerance in both rice and Arabidopsis.	Plant Cell Physiol.	55(6)	1142-56	2014		
40420	24904618	Hu Y., Lai Y., Zhu D.	Transcription regulation by CHD proteins to control plant development.	Front Plant Sci	5	223	2014		
40421	24920973	Wu L.B., Shhadi M.Y., Gregorio G., Matthus E., Becker M., Frei M.	Genetic and physiological analysis of tolerance to acute iron toxicity in rice.	Rice (N Y)	7(1)	8	2014		
40422	24788204	Xiao N., Huang W.N., Zhang X.X., Gao Y., Li A.H., Dai Y., Yu L., Liu G.Q., Pan C.H., Li Y.H., Dai Z.Y., Chen J.M.	Fine mapping of qRC10-2, a quantitative trait locus for cold tolerance of rice roots at seedling and mature stages.	PLoS ONE	9(5)	e96046	2014		
40423	24920971	Xu R., Li H., Qin R., Wang L., Li L., Wei P., Yang J.	Gene targeting using the Agrobacterium tumefaciens-mediated CRISPR-Cas system in rice.	Rice (N Y)	7(1)	5	2014		
40424	24904616	Coelho C.P., Minow M.A., Chalfun-J?nior A., Colasanti J.	Putative sugarcane FT/TFL1 genes delay flowering time and alter reproductive architecture in Arabidopsis.	Front Plant Sci	5	221	2014		
40425	24885138	Zhang F., Ma X.F., Gao Y.M., Hao X.B., Li Z.K.	Genome-wide response to selection and genetic basis of cold tolerance in rice (Oryza sativa L.).	BMC Genet.	15	55	2014		
40426	24820172	Oliver R.E., Islamovic E., Obert D.E., Wise M.L., Herrin L.L., Hang A., Harrison S.A., Ibrahim A., Marshall J.M., Miclaus K.J., Lazo G.R., Hu G., Jackson E.W.	Comparative systems biology reveals allelic variation modulating Tocochromanol profiles in Barley (Hordeum vulgare L.).	PLoS ONE	9(5)	e96276	2014		
40427	24884377	Yang S., Weers B.D., Morishige D.T., Mullet J.E.	CONSTANS is a photoperiod regulated activator of flowering in sorghum.	BMC Plant Biol.	14	148	2014		
40428	24821956	Xia J., Yamaji N., Che J., Shen R.F., Ma J.F.	Differential expression of Nrat1 is responsible for Al-tolerance QTL on chromosome 2 in rice.	J. Exp. Bot.	65(15)	4297-304	2014		
40429	24949276	Doni F., Isahak A., Che Mohd Zain CR., Wan Yusoff WM.	Physiological and growth response of rice plants (Oryza sativa L.) to Trichoderma spp. inoculants.	AMB Express	4	45	2014		
40430	24853557	Xie X., Kagawa T., Takano M.	The phytochrome B/phytochrome C heterodimer is necessary for phytochrome C-mediated responses in rice seedlings.	PLoS ONE	9(5)	e97264	2014		
40431	24847340	Do P.T., Drechsel O., Heyer A.G., Hincha D.K., Zuther E.	Changes in free polyamine levels, expression of polyamine biosynthesis genes, and performance of rice cultivars under salt stress: a comparison with responses to drought.	Front Plant Sci	5	182	2014		
40432	24817546	Sun L., Ye M., Hao H., Wang N., Wang Y., Cheng T., Zhang Q., Wu R.	A model framework for identifying genes that guide the evolution of heterochrony.	Mol. Biol. Evol.	31(8)	2238-47	2014		
40433	25069161	Wang R., Liu S., Zhou F., Ding C., Hua C.	Exogenous ascorbic acid and glutathione alleviate oxidative stress induced by salt stress in the chloroplasts of Oryza sativa L.	Z. Naturforsch., C, J. Biosci.	69(5-6)	226-36			
40434	24904613	Zanke C., Ling J., Plieske J., Kollers S., Ebmeyer E., Korzun V., Argillier O., Stiewe G., Hinze M., Beier S., Ganal M.W., R?der MS.	Genetic architecture of main effect QTL for heading date in European winter wheat.	Front Plant Sci	5	217	2014		
40435	24850835	Ikeuchi M., Uebayashi N., Sato F., Endo T.	Physiological functions of PsbS-dependent and PsbS-independent NPQ under naturally fluctuating light conditions.	Plant Cell Physiol.	55(7)	1286-95	2014		
40436	24748469	Zhang F., Wang L., Fan K., Wu J., Ying Y.	The detection of T-Nos, a genetic element present in GMOs, by cross-priming isothermal amplification with real-time fluorescence.	Anal Bioanal Chem	406(13)	3069-78	2014		
40437	24863060	Chittela R.K., Gupta G.D., Ballal A.	Characterization of a plant (rice) translin and its comparative analysis with human translin.	Planta	240(2)	357-68	2014		
40438	24841958	Khan M.A., Sen P.P., Bhuiyan R., Kabir E., Chowdhury A.K., Fukuta Y., Ali A., Latif M.A.	Phenotypic screening and molecular analysis of blast resistance in fragrant rice for marker assisted selection.	C. R. Biol.	337(5)	318-24	2014		
40439	25110131	Nutaratat P., Srisuk N., Arunrattiyakorn P., Limtong S.	Plant growth-promoting traits of epiphytic and endophytic yeasts isolated from rice and sugar cane leaves in Thailand.	Fungal Biol	118(8)	683-94	2014		
40440	24852039	Yang Y., Wang D., Zhang X., Fang J., Shen Z., Lin C.	Transgenic rice as bioreactor for production of the Candida antarctica lipase B.	Plant Biotechnol. J.	12(7)	963-70	2014		
40441	24840865	Kim Y.H., Khan A.L., Waqas M., Jeong H.J., Kim D.H., Shin J.S., Kim J.G., Yeon M.H., Lee I.J.	Regulation of jasmonic acid biosynthesis by silicon application during physical injury to Oryza sativa L.	J. Plant Res.	127(4)	525-32	2014		
40442	24819712	Zeng F., Wu X., Qiu B., Wu F., Jiang L., Zhang G.	Physiological and proteomic alterations in rice (Oryza sativa L.) seedlings under hexavalent chromium stress.	Planta	240(2)	291-308	2014		
40443	24795339	Zhang G.H., Li S.Y., Wang L., Ye W.J., Zeng D.L., Rao Y.C., Peng Y.L., Hu J., Yang Y.L., Xu J., Ren D.Y., Gao Z.Y., Zhu L., Dong G.J., Hu X.M., Yan M.X., Guo L.B., Li C.Y., Qian Q.	LSCHL4 from Japonica Cultivar, which is allelic to NAL1, increases yield of indica super rice 93-11.	Mol Plant	7(8)	1350-64	2014	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4
40444	24840062	Chen Y.A., Chi W.C., Trinh N.N., Huang L.Y., Chen Y.C., Cheng K.T., Huang T.L., Lin C.Y., Huang H.J.	Transcriptome profiling and physiological studies reveal a major role for aromatic amino acids in mercury stress tolerance in rice seedlings.	PLoS ONE	9(5)	e95163	2014		
40445	24885019	Yonemaru J., Mizobuchi R., Kato H., Yamamoto T., Yamamoto E., Matsubara K., Hirabayashi H., Takeuchi Y., Tsunematsu H., Ishii T., Ohta H., Maeda H., Ebana K., Yano M.	Genomic regions involved in yield potential detected by genome-wide association analysis in Japanese high-yielding rice cultivars.	BMC Genomics	15	346	2014		
40446	24877598	Chang B.V., Chang Y.M.	Biodegradation of toxic chemicals by Pleurotus eryngii in submerged fermentation and solid-state fermentation.	J Microbiol Immunol Infect			2014		
40447	24856588	Yoshizawa T., Miyahara M., Kouzuma A., Watanabe K.	Conversion of activated-sludge reactors to microbial fuel cells for wastewater treatment coupled to electricity generation.	J. Biosci. Bioeng.			2014		
40448	25018755	Sprink T., Hartung F.	The splicing fate of plant SPO11 genes.	Front Plant Sci	5	214	2014		
40449	24886329	Zhou Q., Jia J., Huang X., Yan X., Cheng L., Chen S., Li X., Peng X., Liu G.	The large-scale investigation of gene expression in Leymus chinensis stigmas provides a valuable resource for understanding the mechanisms of poaceae self-incompatibility.	BMC Genomics	15	399	2014		
40450	24860584	Matsubara K., Hori K., Ogiso-Tanaka E., Yano M.	Cloning of quantitative trait genes from rice reveals conservation and divergence of photoperiod flowering pathways in Arabidopsis and rice.	Front Plant Sci	5	193	2014		
40451	24796672	Yang K.M., Kim B.M., Park J.B.	omega-Hydroxyundec-9-enoic acid induces apoptosis through ROS-mediated endoplasmic reticulum stress in non-small cell lung cancer cells.	Biochem. Biophys. Res. Commun.	448(3)	267-73	2014		
40452	24784760	Campo S., Baldrich P., Messeguer J., Lalanne E., Coca M., San Segundo B.	Overexpression of a Calcium-Dependent Protein Kinase Confers Salt and Drought Tolerance in Rice by Preventing Membrane Lipid Peroxidation.	Plant Physiol.	165(2)	688-704	2014		
40453	25036967	Satoh Y., Miki S., Ose T., Oikawa A., Maenaka K., Terauchi R., Asano K., Sone T.	Heterologous production, purification, and immunodetection of Magnaporthe oryzae avirulence protein AVR-Pia.	Biosci. Biotechnol. Biochem.	78(4)	680-6	2014		
40454	24291688	Mukhopadhyay R., Bhattacharjee H., Rosen B.P.	Aquaglyceroporins: generalized metalloid channels.	Biochim. Biophys. Acta	1840(5)	1583-91	2014		
40455	25129932	Jia Z.J., Han L., Wang G., Zhang T.S.	[Adaptability analysis of FAO Penman-Monteith model over typical underlying surfaces in the Sanjiang Plain, Northeast China].	Ying Yong Sheng Tai Xue Bao	25(5)	1327-34	2014		
40456	24878425	Yan J., Tian H., Wang S., Shao J., Zheng Y., Zhang H., Guo L., Ding Y.	pollen developmental defects in ZD-CMS rice line explored by cytological, molecular and proteomic approaches.	J Proteomics	108	110-23	2014		
40457	25055647	Tang X.B., Huang C., Lou S.R., Qiao L.P., Wang H.L., Zhou M., Chen M.H., Chen C.H., Wang Q., Li G.L., Li L., Huang H.Y., Zhang G.F.	[Emission factors and PM chemical composition study of biomass burning in the Yangtze River Delta region].	Huan Jing Ke Xue	35(5)	1623-32	2014		
40458	24899903	Biswas D.K., Bhunia R., Maji D., Das P.	Contaminated pond water favors cholera outbreak at haibatpur village, purba medinipur district, west bengal, India.	J Trop Med	2014	764530	2014		
40459	24886295	Yang Y., Xu J., Leng Y., Xiong G., Hu J., Zhang G., Huang L., Wang L., Guo L., Li J., Chen F., Qian Q., Zeng D.	Quantitative trait loci identification, fine mapping and gene expression profiling for ovicidal response to whitebacked planthopper (Sogatella furcifera Horvath) in rice (Oryza sativa L.).	BMC Plant Biol.	14	145	2014	_	qWL6
40460	24919709	Chern M., Bai W., Ruan D., Oh T., Chen X., Ronald P.C.	Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.	BMC Genomics	15	461	2014		
40461	25071407	Han Y.Y., Yan Q.H., Ming F.	An effective homologous cloning method for isolating novel miR172s from Phalaenopsis hybrida.	Genet. Mol. Biol.	37(2)	414-22	2014		
40462	24917171	Sheng P., Tan J., Jin M., Wu F., Zhou K., Ma W., Heng Y., Wang J., Guo X., Zhang X., Cheng Z., Liu L., Wang C., Liu X., Wan J.	albino midrib 1, encoding a putative potassium efflux antiporter, affects chloroplast development and drought tolerance in rice.	Plant Cell Rep.	33(9)	1581-94	2014		
40463	25197449	Liu Y., Ye W., Zheng J., Fang L., Peng D., Ruan L., Sun M.	High-quality draft genome sequence of nematocidal Bacillus thuringiensis Sbt003.	Stand Genomic Sci	9(3)	624-31	2014		
40464	25289005	Shin S.H., Pak J.H., Kim M.J., Kim H.J., Oh J.S., Choi H.K., Jung H.W., Chung Y.S.	An Acidic PATHOGENESIS-RELATED1 Gene of Oryza grandiglumis is Involved in disease resistance Response Against Bacterial Infection.	Plant Pathol. J.	30(2)	208-14	2014		
40465	24951312	Miyazawa S., Hayashi K., Nakamura H., Hasegawa T., Miyao M.	Elevated CO2 decreases the Photorespiratory NH3 production but does not decrease the NH3 compensation point in rice leaves.	Plant Cell Physiol.	55(9)	1582-91	2014		
40466	24939035	Kim M.K., Jang M.S., Youn J.H., Son S.H., Lee J.E., Kim T.W., Kim S.K.	Occurrence of phosphorylated castasterone in Arabidopsis thaliana and Lycopersicum esculentum.	Physiol Plant			2014		
40467	24991566	Hasanuzzaman M., Alam M.M., Rahman A., Hasanuzzaman M., Nahar K., Fujita M.	Exogenous proline and glycine betaine mediated upregulation of antioxidant defense and glyoxalase systems provides better protection against salt-induced oxidative stress in two rice (Oryza sativa L.) varieties.	Biomed Res Int	2014	757219	2014		
40468	25014263	Nguyen V.N., Moon S., Jung K.H.	Genome-wide expression analysis of rice ABC transporter family across spatio-temporal samples and in response to abiotic stresses.	J. Plant Physiol.	171(14)	1276-88	2014		
40469	24965356	Dansana P.K., Kothari K.S., Vij S., Tyagi A.K.	OsiSAP1 overexpression improves water-deficit stress tolerance in transgenic rice by affecting expression of endogenous stress-related genes.	Plant Cell Rep.	33(9)	1425-40	2014		
40470	24944111	Wang B.J., Hsu Y.F., Chen Y.C., Wang C.S.	Characterization of a lily anther-specific gene encoding cytoskeleton-binding glycoproteins and overexpression of the gene causes severe inhibition of pollen tube growth.	Planta	240(3)	525-37	2014		
40471	24987305	Kawasaki-Tanaka A., Fukuta Y.	Genetic variation in resistance to blast disease (Pyricularia oryzae Cavara) in Japanese rice (Oryza sativa L.), as determined using a differential system.	Breed. Sci.	64(2)	183-92	2014		
40472	24966130	Cigan A.M., Haug-Collet K., Clapp J.	Transcriptional silencing of heterologous anther promoters in maize: a genetic method to replace detasseling for seed production.	Plant Reproduction	27(3)	109-20	2014		
40473	24976603	Wang Y., Zhang J., Yu J., Jiang X., Sun L., Wu M., Chen G., Lv C.	Photosynthetic changes of flag leaves during senescence stage in super high-yield hybrid rice LYPJ grown in field condition.	Plant Physiol. Biochem.	82	194-201	2014		
40474	24893047	Ogo Y., Kakei Y., Itai R.N., Kobayashi T., Nakanishi H., Nishizawa N.K.	Tissue-specific transcriptional profiling of iron-deficient and cadmium-stressed rice using laser capture microdissection.	Plant Signal Behav	9		2014		
40475	24890396	Hong Y., Chen L., Du L.P., Su Z., Wang J., Ye X., Qi L., Zhang Z.	Transcript suppression of TaGW2 increased grain width and weight in bread wheat.	Funct. Integr. Genomics	14(2)	341-9	2014		
40476	24888863	Yamada Y., Furusawa S., Nagasaka S., Shimomura K., Yamaguchi S., Umehara M.	Strigolactone signaling regulates rice leaf senescence in response to a phosphate deficiency.	Planta	240(2)	399-408	2014		
40477	24921928	Teramoto S., Tsukiyama T., Okumoto Y., Tanisaka T.	Early embryogenesis-specific expression of the rice transposon Ping enhances amplification of the MITE mPing.	PLoS Genet.	10(6)	e1004396	2014		
40478	24987300	Hoai T.T., Matsusaka H., Toyosawa Y., Suu T.D., Satoh H., Kumamaru T.	Influence of single-nucleotide polymorphisms in the gene encoding granule-bound starch synthase I on amylose content in Vietnamese rice cultivars.	Breed. Sci.	64(2)	142-8	2014		
40479	24896089	Zhai C., Zhang Y., Yao N., Lin F., Liu Z., Dong Z., Wang L., Pan Q.	Function and interaction of the coupled genes responsible for Pik-h encoded rice blast resistance.	PLoS ONE	9(6)	e98067	2014	_,_	Pikh-2,Pikh-1
40480	25381433	Borrell A.K., Mullet J.E., George-Jaeggli B., van Oosterom EJ., Hammer G.L., Klein P.E., Jordan D.R.	Drought adaptation of stay-green sorghum is associated with canopy development, leaf anatomy, root growth, and water uptake.	J. Exp. Bot.	65(21)	6251-63	2014		
40481	24913125	Ma T., Li M., Zhao A., Xu X., Liu G., Cheng L.	LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis.	Plant Cell Rep.	33(9)	1507-18	2014		
40482	24980094	Wang N., Zhang D., Wang Z., Xun H., Ma J., Wang H., Huang W., Liu Y., Lin X., Li N., Ou X., Zhang C., Wang M.B., Liu B.	Mutation of the RDR1 gene caused genome-wide changes in gene expression, regional variation in small RNA clusters and localized alteration in DNA methylation in rice.	BMC Plant Biol.	14	177	2014		
40483	24947835	Xiao Y., Chen Y., Charnikhova T., Mulder P.P., Heijmans J., Hoogenboom A., Agalou A., Michel C., Morel J.B., Dreni L., Kater M.M., Bouwmeester H., Wang M., Zhu Z., Ouwerkerk P.B.	OsJAR1 is required for JA-regulated floret opening and anther dehiscence in rice.	Plant Mol. Biol.	86(1-2)	19-33	2014	JAR1	OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
40484	24955773	Ouyang S., Zhang D., Han J., Zhao X., Cui Y., Song W., Huo N., Liang Y., Xie J., Wang Z., Wu Q., Chen Y.X., Lu P., Zhang D.Y., Wang L., Sun H., Yang T., Keeble-Gagnere G., Appels R., Dole?el J., Ling H.Q., Luo M., Gu Y., Sun Q., Liu Z.	Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides).	PLoS ONE	9(6)	e100160	2014		
40485	24905696	Gupta M., Ahmad M.A.	Arsenate induced differential response in rice genotypes.	Ecotoxicol. Environ. Saf.	107	46-54	2014		
40486	25076836	Trijatmiko K.R., Supriyanta, Prasetiyono J., Thomson M.J., Vera Cruz CM., Moeljopawiro S., Pereira A.	Meta-analysis of quantitative trait loci for grain yield and component traits under reproductive-stage drought stress in an upland rice population.	Mol. Breed.	34	283-295	2014		
40487	24938486	Zhong J., Lei X.H., Zhu J.Z., Song G., Zhang Y.D., Chen Y., Gao B.D.	Detection and sequence analysis of two novel co-infecting double-strand RNA mycoviruses in Ustilaginoidea virens.	Arch. Virol.	159(11)	3063-70	2014		
40488	25017165	Hirose T., Hashida Y., Aoki N., Okamura M., Yonekura M., Ohto C., Terao T., Ohsugi R.	Analysis of gene-disruption mutants of a sucrose phosphate synthase gene in rice, OsSPS1, shows the importance of sucrose synthesis in pollen germination.	Plant Sci.	225	102-6	2014		
40489	24893854	Okishio T., Sasayama D., Hirano T., Akimoto M., Itoh K., Azuma T.	Growth promotion and inhibition of the Amazonian wild rice species Oryza grandiglumis to survive flooding.	Planta	240(3)	459-69	2014		
40490	24987297	Ootsuka K., Takahashi I., Tanaka K., Itani T., Tabuchi H., Yoshihashi T., Tonouchi A., Ishikawa R.	Genetic polymorphisms in Japanese fragrant landraces and novel fragrant allele domesticated in northern Japan.	Breed. Sci.	64(2)	115-24	2014		
40491	24946831	Fang Y., Hu J., Xu J., Yu H., Shi Z., Xiong G., Zhu L., Zeng D., Zhang G., Gao Z., Dong G., Yan M., Guo L., Wang Y., Qian Q.	Identification and characterization of mini1, a gene regulating rice shoot development.	J Integr Plant Biol			2014		
40492	24953696	Liang W., Cui W., Ma X., Wang G., Huang Z.	Function of wheat Ta-UnP gene in enhancing salt tolerance in transgenic Arabidopsis and rice.	Biochem. Biophys. Res. Commun.	450(1)	794-801	2014		
40493	24981923	Seto Y., Yamaguchi S.	Strigolactone biosynthesis and perception.	Curr. Opin. Plant Biol.	21C	1-6	2014		
40494	25040950	Liu Y., Chen L., Fu D., Lou Q., Mei H., Xiong L., Li M., Xu X., Mei X., Luo L.	Dissection of additive, epistatic effect and QTL ~ environment interaction of quantitative trait loci for sheath blight resistance in rice.	Hereditas	151(2-3)	28-37	2014		
40495	24950734	Qian Y., Xi Y., Cheng B., Zhu S.	Genome-wide identification and expression profiling of DNA methyltransferase gene family in maize.	Plant Cell Rep.	33(10)	1661-72	2014		
40496	24937109	Phing Lau WC., Latif M.A., Y Rafii M., Ismail M.R., Puteh A.	Advances to improve the eating and cooking qualities of rice by marker-assisted breeding.	Crit. Rev. Biotechnol.		1-12	2014		
40497	25093205	Mahajan G., Ramesha M.S., Chauhan B.S.	Response of rice genotypes to weed competition in dry direct-seeded rice in India.	ScientificWorldJournal	2014	641589	2014		
40498	24962048	Zhang Z., Zhang J., Chen Y., Li R., Wang H., Ding L., Wei J.	Isolation, structural analysis, and expression characteristics of the maize (Zea mays L.) hexokinase gene family.	Mol. Biol. Rep.	41(9)	6157-66	2014		
40499	24920304	Byeon Y., Lee H.Y., Lee K., Back K.	A rice chloroplast transit peptide sequence does not alter the cytoplasmic localization of sheep serotonin N-acetyltransferase expressed in transgenic rice plants.	J. Pineal Res.	57(2)	147-54	2014		
40500	24911169	Jing S., Zhang L., Ma Y., Liu B., Zhao Y., Yu H., Zhou X., Qin R., Zhu L., He G.	Genome-wide mapping of virulence in brown planthopper identifies loci that break down host plant resistance.	PLoS ONE	9(6)	e98911	2014		
40501	24819479	Du M., Luo M., Zhang R., Finnegan E.J., Koltunow A.M.	Imprinting in rice: the role of DNA and histone methylation in modulating parent-of-origin specific expression and determining transcript start sites.	Plant J.	79(2)	232-42	2014		
40502	24899551	Kobae Y., Fujiwara T.	Earliest colonization events of Rhizophagus irregularis in rice roots occur preferentially in previously uncolonized cells.	Plant Cell Physiol.	55(8)	1497-510	2014		
40503	25358159	Li Y.N., Jiang D., Liu Y.Y., Ding W.M., Ding Q.S., Zha L.Y.	[Testing of germination rate of hybrid rice seeds based on near-infrared reflectance spectroscopy].	Guang Pu Xue Yu Guang Pu Fen Xi	34(6)	1528-32	2014		
40504	24924297	Lin Z., Zhang X., Yang X., Li G., Tang S., Wang S., Ding Y., Liu Z.	Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ and a novel comparison system based on a notched-belly mutant with white-belly.	BMC Plant Biol.	14	163	2014		
40505	24945975	Liu Z., Qian J., Liu B., Wang Q., Ni X., Dong Y., Zhong K., Wu Y.	Effects of the magnetic resonance imaging contrast agent Gd-DTPA on plant growth and root imaging in rice.	PLoS ONE	9(6)	e100246	2014		
40506	24888399	Shen W., Chen G., Xu J., Zhen X., Ma J., Zhang X., Lv C., Gao Z.	High light acclimation of Oryza sativa L. leaves involves specific photosynthetic-sourced changes of NADPH/NADP(+) in the midvein.	Protoplasma			2014		
40507	25028572	Chen Y., Chen X., Wang H., Bao Y., Zhang W.	Examination of the leaf proteome during flooding stress and the induction of programmed cell death in maize.	Proteome Sci	12	33	2014		
40508	24972305	Yang B., Ma H.Y., Wang X.M., Jia Y., Hu J., Li X., Dai C.C.	Improvement of nitrogen accumulation and metabolism in rice (Oryza sativa L.) by the endophyte Phomopsis liquidambari.	Plant Physiol. Biochem.	82	172-82	2014		
40509	25158521	Chang T.J., Cui X.Q., Ruan Z., Zhao X.L.	[Long-term effects of tillage methods on heavy metal accumulation and availability in purple paddy soil].	Huan Jing Ke Xue	35(6)	2381-91	2014		
40510	24798203	Xu Y., Zhang S., Guo H., Wang S., Xu L., Li C., Qian Q., Chen F., Geisler M., Qi Y., Jiang de A.	OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.).	Plant J.	79(1)	106-17	2014		
40511	24987490	Fujikawa Y., Nakanishi T., Kawakami H., Yamasaki K., Sato M.H., Tsuji H., Matsuoka M., Kato N.	Split luciferase complementation assay to detect regulated protein-protein interactions in rice protoplasts in a large-scale format.	Rice (N Y)	7(1)	11	2014		
40512	24939891	Angeles-Shim RB., Vinarao R.B., Marathi B., Jena K.K.	Molecular analysis of Oryza latifolia Desv. (CCDD genome)-derived introgression lines and identification of value-added traits for rice (O. sativa L.) improvement.	J. Hered.	105(5)	676-89			
40513	24963001	Yang M., Zhang Y., Zhang L., Hu J., Zhang X., Lu K., Dong H., Wang D., Zhao F.J., Huang C.F., Lian X.	OsNRAMP5 contributes to manganese translocation and distribution in rice shoots.	J. Exp. Bot.	65(17)	4849-61	2014		
40514	24794921	Shirsekar G.S., Vega-S?nchez ME., Bordeos A., Baraoidan M., Swisshelm A., Fan J., Park C.H., Leung H., Wang G.L.	Identification and characterization of suppressor mutants of spl11- mediated cell death in rice.	Mol. Plant Microbe Interact.	27(6)	528-36	2014	SDS1,PR10A,KS4,SDS3,POX3006,NAC4,SPL11	OsSDS1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsSDS3,POX3006, prx114, PO-C1, POC-1, POC1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,spl11, spl11*, OsPUB11, PUB11
40515	24948669	Wang X., Tam N.F., Fu S., Ametkhan A., Ouyang Y., Ye Z.	Selenium addition alters mercury uptake, bioavailability in the rhizosphere and root anatomy of rice (Oryza sativa).	Ann. Bot.	114(2)	271-8	2014		
40516	24906815	Wang Z., Cui Y., Chen Y., Zhang D., Liang Y., Zhang D., Wu Q., Xie J., Ouyang S., Li D., Huang Y., Lu P., Wang G., Yu M., Zhou S., Sun Q., Liu Z.	Comparative genetic mapping and genomic region collinearity analysis of the powdery mildew resistance gene Pm41.	Theor. Appl. Genet.	127(8)	1741-51	2014		
40517	25053919	Naito K., Monden Y., Yasuda K., Saito H., Okumoto Y.	mPing: The bursting transposon.	Breed. Sci.	64(2)	109-14	2014		
40518	24891164	Ayano M., Kani T., Kojima M., Sakakibara H., Kitaoka T., Kuroha T., Angeles-Shim RB., Kitano H., Nagai K., Ashikari M.	Gibberellin biosynthesis and signal transduction is essential for internode elongation in deepwater rice.	Plant Cell Environ.	37(10)	2313-24	2014		
40519	25053643	Wu D., Shen H., Yokawa K., Balu?ka F.	Alleviation of aluminium-induced cell rigidity by overexpression of OsPIN2 in rice roots.	J. Exp. Bot.	65(18)	5305-15	2014		
40520	24841874	Liu C.W., Chang T.S., Hsu Y.K., Wang A.Z., Yen H.C., Wu Y.P., Wang C.S., Lai C.C.	Comparative proteomic analysis of early salt stress responsive proteins in roots and leaves of rice.	Proteomics	14(15)	1759-75	2014		
40521	24995697	Han X., Yang Y., Wang X., Zhou J., Zhang W., Yu C., Cheng C., Cheng Y., Yan C., Chen J.	Quantitative trait Loci mapping for bacterial blight resistance in rice using bulked segregant analysis.	Int J Mol Sci	15(7)	11847-61	2014		
40522	24798002	Yang X., Wu D., Shi J., He Y., Pinot F., Grausem B., Yin C., Zhu L., Chen M., Luo Z., Liang W., Zhang D.	Rice CYP703A3, a cytochrome P450 hydroxylase, is essential for development of anther cuticle and pollen exine.	J Integr Plant Biol	56(10)	979-94	2014	CYP703A3	OsCYP703A3
40523	24996032	Smith S.M., Li J.	Signalling and responses to strigolactones and karrikins.	Curr. Opin. Plant Biol.	21C	23-29	2014		
40524	25219308	Xie G., Sasaki K., Imai R., Xie D.	A redox-sensitive cysteine residue regulates the kinase activities of OsMPK3 and OsMPK6 in vitro.	Plant Sci.	227	69-75	2014		
40525	25136671	Wu W., Wan X., Shah F., Fahad S., Huang J.	The role of antioxidant enzymes in adaptive responses to sheath blight infestation under different fertilization rates and hill densities.	ScientificWorldJournal	2014	502134	2014		
40526	25061741	Ahmad F., Huang X., Lan H.X., Huma T., Bao Y.M., Huang J., Zhang H.S.	Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.).	Genet. Mol. Res.	13(3)	5159-72	2014		
40527	25071811	Li N., Li Y.	Ubiquitin-mediated control of seed size in plants.	Front Plant Sci	5	332	2014		
40528	25096046	Mainiero S., Pawlowski W.P.	Meiotic chromosome structure and function in plants.	Cytogenet. Genome Res.	143(1-3)	6-17	2014		
40529	24870048	Kobayashi T., Yamamoto K., Suetsugu Y., Kuwazaki S., Hattori M., Jairin J., Sanada-Morimura S., Matsumura M.	Genetic mapping of the rice resistance-breaking gene of the brown planthopper Nilaparvata lugens.	Proc. Biol. Sci.	281(1787)		2014		
40530	25026554	Yu C., Wang L., Chen C., He C., Hu J., Zhu Y., Huang W.	Protoplast: a more efficient system to study nucleo-cytoplasmic interactions.	Biochem. Biophys. Res. Commun.	450(4)	1575-80	2014		
40531	25320465	Ali M.N., Yeasmin L., Gantait S., Goswami R., Chakraborty S.	Screening of rice landraces for salinity tolerance at seedling stage through morphological and molecular markers.	Physiol Mol Biol Plants	20(4)	411-23	2014		
40532	24987012	Zhang J., Ku L.X., Han Z.P., Guo S.L., Liu H.J., Zhang Z.Z., Cao L.R., Cui X.J., Chen Y.H.	The ZmCLA4 gene in the qLA4-1 QTL controls leaf angle in maize (Zea mays L.).	J. Exp. Bot.	65(17)	5063-76	2014		
40533	24985700	Kong X., Zhang M., Xu X., Li X., Li C., Ding Z.	System analysis of microRNAs in the development and aluminium stress responses of the maize root system.	Plant Biotechnol. J.	12(8)	1108-21	2014		
40534	25033935	Akagi A., Fukushima S., Okada K., Jiang C.J., Yoshida R., Nakayama A., Shimono M., Sugano S., Yamane H., Takatsuji H.	WRKY45-dependent priming of diterpenoid phytoalexin biosynthesis in rice and the role of cytokinin in triggering the reaction.	Plant Mol. Biol.	86(1-2)	171-83	2014		
40535	25034643	Simmonds J., Scott P., Leverington-Waite M., Turner A.S., Brinton J., Korzun V., Snape J., Uauy C.	Identification and independent validation of a stable yield and thousand grain weight QTL on chromosome 6A of hexaploid wheat (Triticum aestivum L.).	BMC Plant Biol.	14	191	2014		
40536	25023387	Singh A.A., Agrawal S.B., Shahi J.P., Agrawal M.	Investigating the response of tropical maize (Zea mays L.) cultivars against elevated levels of O3 at two developmental stages.	Ecotoxicology	23(8)	1447-63	2014		
40537	25055794	Ji S.H., Gururani M.A., Chun S.C.	Expression analysis of rice pathogenesis-related proteins involved in stress response and endophytic colonization properties of gfp-tagged Bacillus subtilis CB-R05.	Appl. Biochem. Biotechnol.	174(1)	231-41	2014		
40538	25064847	Lu J., Li J., Ju H., Liu X., Erb M., Wang X., Lou Y.	Contrasting Effects of Ethylene Biosynthesis on Induced Plant Resistance against a Chewing and a Piercing-Sucking Herbivore in Rice.	Mol Plant			2014		
40539	25002224	Ogo Y., Takahashi H., Wang S., Takaiwa F.	Generation mechanism of novel, huge protein bodies containing wild type or hypoallergenic derivatives of birch pollen allergen Bet v 1 in rice endosperm.	Plant Mol. Biol.	86(1-2)	111-23	2014		
40540	24783971	Zhang J., Zhao Y., Xiao H., Zheng Y., Yue B.	Genome-wide identification, evolution, and expression analysis of RNA-binding glycine-rich protein family in maize.	J Integr Plant Biol	56(10)	1020-31	2014		
40541	25046853	He J., Ren Y., Chen X., Chen H.	Protective roles of nitric oxide on seed germination and seedling growth of rice (Oryza sativa L.) under cadmium stress.	Ecotoxicol. Environ. Saf.	108	114-9	2014		
40542	24985886	Kumar A., Singh R.P., Singh P.K., Awasthi S., Chakrabarty D., Trivedi P.K., Tripathi R.D.	Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.).	Ecotoxicology	23(7)	1153-63	2014		
40543	25067834	Lu Z.B., Liu Y.E., Han N.S., Tian J.C., Peng Y.F., Hu C., Guo Y.Y., Ye G.Y.	Transgenic cry1C or cry2A rice has no adverse impacts on the life-table parameters and population dynamics of the brown planthopper, Nilaparvata lugens (Hemiptera: Delphacidae).	Pest Manag. Sci.			2014		
40544	25056418	Huang T.L., Huang L.Y., Fu S.F., Trinh N.N., Huang H.J.	Genomic profiling of rice roots with short- and long-term chromium stress.	Plant Mol. Biol.	86(1-2)	157-70	2014		
40545	25040350	Shen G., Hu W., Zhang B., Xing Y.	The regulatory network mediated by circadian clock genes is related to heterosis in rice.	J Integr Plant Biol			2014		
40546	25003197	Xu Q., Xu X., Shi Y., Xu J., Huang B.	Transgenic tobacco plants overexpressing a grass PpEXP1 gene exhibit enhanced tolerance to heat stress.	PLoS ONE	9(7)	e100792	2014		
40547	25040333	McGrann G.R., Steed A., Burt C., Goddard R., Lachaux C., Bansal A., Corbitt M., Gorniak K., Nicholson P., Brown J.K.	Contribution of the drought tolerance-related Stress-responsive NAC1 transcription factor to resistance of barley to Ramularia leaf spot.	Mol. Plant Pathol.			2014		
40548	25048298	Shri M., Dave R., Diwedi S., Shukla D., Kesari R., Tripathi R.D., Trivedi P.K., Chakrabarty D.	Heterologous expression of Ceratophyllum demersum phytochelatin synthase, CdPCS1, in rice leads to lower arsenic accumulation in grain.	Sci Rep	4	5784	2014		
40549	25047236	Tyler A.M., Bhandari D.G., Poole M., Napier J.A., Jones H.D., Lu C., Lycett G.W.	Gluten quality of bread wheat is associated with activity of RabD GTPases.	Plant Biotechnol. J.			2014		
40550	24320720	Mitani-Ueno N., Ogai H., Yamaji N., Ma J.F.	Physiological and molecular characterization of Si uptake in wild rice species.	Physiol Plant	151(3)	200-7	2014		
40551	25061821	Liu T., Wook Kim D., Niitsu M., Berberich T., Kusano T.	POLYAMINE OXIDASE 1 from rice (Oryza sativa) is a functional ortholog of Arabidopsis POLYAMINE OXIDASE 5.	Plant Signal Behav	9		2014		
40552	25110688	Basu S., Roychoudhury A.	Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.	Biomed Res Int	2014	706890	2014		
40553	25026190	Wang X., Chen X., Xu J., Wang P., Shen W.	Multiplex event-specific qualitative polymerase chain reaction for detecting three transgenic rice lines and application of a standard plasmid as a quantitative reference molecule.	Anal. Biochem.	464	1-8	2014		
40554	25024433	C?sari S., Kanzaki H., Fujiwara T., Bernoux M., Chalvon V., Kawano Y., Shimamoto K., Dodds P., Terauchi R., Kroj T.	The NB-LRR proteins RGA4 and RGA5 interact functionally and physically to confer disease resistance.	EMBO J.	33(17)	1941-59	2014		
40555	24905498	Lao J., Oikawa A., Bromley J.R., McInerney P., Suttangkakul A., Smith-Moritz AM., Plahar H., Chiu T.Y., Gonz?lez Fern?ndez-Ni?o SM., Ebert B., Yang F., Christiansen K.M., Hansen S.F., Stonebloom S., Adams P.D., Ronald P.C., Hillson N.J., Hadi M.Z., Vega-S?nchez ME., Loqu? D., Scheller H.V., Heazlewood J.L.	The plant glycosyltransferase clone collection for functional genomics.	Plant J.	79(3)	517-29	2014		
40556	25062529	Hayatsu M., Suzuki S., Hasegawa A., Tsuchiya S., Sasamoto H.	Effect of NaCl on ionic content and distribution in suspension-cultured cells of the halophyte Sonneratia alba versus the glycophyte Oryza sativa.	J. Plant Physiol.	171(15)	1385-91	2014		
40557	25052585	Peng T., Sun H., Qiao M., Zhao Y., Du Y., Zhang J., Li J., Tang G., Zhao Q.	Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice.	BMC Plant Biol.	14(1)	196	2014		
40558	24988301	Zhu C., Ming C., Zhao-shi X., Lian-cheng L., Xue-ping C., You-zhi M.	Characteristics and expression patterns of the aldehyde dehydrogenase (ALDH) gene superfamily of foxtail millet (Setaria italica L.).	PLoS ONE	9(7)	e101136	2014		
40559	25063863	Nitcher R., Pearce S., Tranquilli G., Zhang X., Dubcovsky J.	Effect of the hope FT-B1 allele on wheat heading time and yield components.	J. Hered.	105(5)	666-75			
40560	25054628	Anderson O.D.	The spectrum of major seed storage genes and proteins in oats (Avena sativa).	PLoS ONE	9(7)	e83569	2014		
40561	25024277	Tada Y., Komatsubara S., Kurusu T.	Growth and physiological adaptation of whole plants and cultured cells from a halophyte turf grass under salt stress.	AoB Plants	6		2014		
40562	25006358	Kim H., Jeong E.G., Ahn S.N., Doyle J., Singh N., Greenberg A.J., Won Y.J., McCouch S.R.	Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people's republic of Korea (DPRK; North Korea).	Rice (N Y)	7(1)	7	2014		
40563	24988911	Arai-Sanoh Y., Takai T., Yoshinaga S., Nakano H., Kojima M., Sakakibara H., Kondo M., Uga Y.	Deep rooting conferred by DEEPER ROOTING 1 enhances rice yield in paddy fields.	Sci Rep	4	5563	2014		
40564	25071222	Asai H., Abe N., Matsushima R., Crofts N., Oitome N.F., Nakamura Y., Fujita N.	Deficiencies in both Starch synthase IIIa and branching enzyme IIb lead to a significant increase in amylose in SSIIa-inactive japonica rice seeds.	J. Exp. Bot.	65(18)	5497-507	2014	ALK,FLO5,SBE3	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
40565	25056242	Kusaba M., Mochida T., Naridomi T., Fujita Y., Chuma I., Tosa Y.	Loss of a 1.6 Mb chromosome in Pyricularia oryzae harboring two alleles of AvrPik leads to acquisition of virulence to rice cultivars containing resistance alleles at the Pik locus.	Curr. Genet.	60(4)	315-25	2014		
40566	25016378	Das B., Sengupta S., Prasad M., Ghose T.K.	Genetic diversity of the conserved motifs of six bacterial leaf blight resistance genes in a set of rice landraces.	BMC Genet.	15	82	2014		
40567	25076167	Tamura Y., Hattori M., Yoshioka H., Yoshioka M., Takahashi A., Wu J., Sentoku N., Yasui H.	Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52.	Sci Rep	4	5872	2014	BPH26	Bph26(t)
40568	25059596	Aitken K.S., McNeil M.D., Berkman P.J., Hermann S., Kilian A., Bundock P.C., Li J.	Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane.	BMC Plant Biol.	14	190	2014		
40569	24987959	Hirano K., Okuno A., Hobo T., Ordonio R., Shinozaki Y., Asano K., Kitano H., Matsuoka M.	Utilization of stiff culm trait of rice smos1 mutant for increased lodging resistance.	PLoS ONE	9(7)	e96009	2014		
40570	24989432	Iizuka M., Wakasa Y., Tsuboi H., Asashima H., Hirota T., Kondo Y., Matsumoto I., Takaiwa F., Sumida T.	Suppression of collagen-induced arthritis by oral administration of transgenic rice seeds expressing altered peptide ligands of type II collagen.	Plant Biotechnol. J.	12(8)	1143-52	2014		
40571	25095703	Chen G., Zhu J., Zhou J., Subburaj S., Zhang M., Han C., Hao P., Li X., Yan Y.	Dynamic development of starch granules and the regulation of starch biosynthesis in Brachypodium distachyon: comparison with common wheat and Aegilops peregrina.	BMC Plant Biol.	14	198	2014		
40572	25041515	Shiono K., Ando M., Nishiuchi S., Takahashi H., Watanabe K., Nakamura M., Matsuo Y., Yasuno N., Yamanouchi U., Fujimoto M., Takanashi H., Ranathunge K., Franke R.B., Shitan N., Nishizawa N.K., Takamure I., Yano M., Tsutsumi N., Schreiber L., Yazaki K., Nakazono M., Kato K.	RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa).	Plant J.	80(1)	40-51	2014		
40573	25099285	Tan S., Han R., Li P., Yang G., Li S., Zhang P., Wang W.B., Zhao W.Z., Yin L.P.	Over-expression of the MxIRT1 gene increases iron and zinc content in rice seeds.	Transgenic Res.			2014		
40574	25103896	Sun C., Chen D., Fang J., Wang P., Deng X., Chu C.	Understanding the genetic and epigenetic architecture in complex network of rice flowering pathways.	Protein Cell			2014		
40575	25091740	Jung M., Shin Y.J., Kim J., Cha S.B., Lee W.J., Shin M.K., Shin S.W., Yang M.S., Jang Y.S., Kwon T.H., Yoo H.S.	Induction of immune responses in mice and pigs by oral administration of classical swine fever virus E2 protein expressed in rice calli.	Arch. Virol.	159(12)	3219-30	2014		
40576	25320467	Mallick S., Kumar N., Sinha S., Dubey A.K., Tripathi R.D., Srivastav V.	H2O2 pretreated rice seedlings specifically reduces arsenate not arsenite: difference in nutrient uptake and antioxidant defense response in a contrasting pair of rice cultivars.	Physiol Mol Biol Plants	20(4)	435-47	2014		
40577	25126953	Cardoso C., Charnikhova T., Jamil M., Delaux P.M., Verstappen F., Amini M., Lauressergues D., Ruyter-Spira C., Bouwmeester H.	Differential activity of Striga hermonthica seed germination stimulants and Gigaspora rosea hyphal branching factors in rice and their contribution to underground communication.	PLoS ONE	9(8)	e104201	2014		
40578	25187932	LI Y., Gu M., Zhang X., Zhang J., Fan H., Li P., Li Z., Xu G.	Engineering a sensitive visual-tracking reporter system for real-time monitoring phosphorus deficiency in tobacco.	Plant Biotechnol. J.	12(6)	674-84	2014		
40579	25124680	Mirzajani F., Askari H., Hamzelou S., Schober Y., R?mpp A., Ghassempour A., Spengler B.	Proteomics study of silver nanoparticles toxicity on Oryza sativa L.	Ecotoxicol. Environ. Saf.	108	335-9	2014		
40580	25164029	Mostofa M.G., Hossain M.A., Fujita M.	Trehalose pretreatment induces salt tolerance in rice (Oryza sativa L.) seedlings: oxidative damage and co-induction of antioxidant defense and glyoxalase systems.	Protoplasma			2014		
40581	25138437	Wu L., Guan Y., Wu Z., Yang K., Lv J., Converse R., Huang Y., Mao J., Zhao Y., Wang Z., Min H., Kan D., Zhang Y.	OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice.	Plant Cell Rep.	33(11)	1881-99	2014	ABCG15	OsABCG15, PDA, PDA1, OsABCG15/PDA1
40582	25104551	Leroux B.M., Goodyke A.J., Schumacher K.I., Abbott C.P., Clore A.M., Yadegari R., Larkins B.A., Dannenhoffer J.M.	Maize early endosperm growth and development: from fertilization through cell type differentiation.	Am. J. Bot.	101(8)	1259-74	2014		
40583	25039887	Byeon Y., Lee H.Y., Lee K., Back K.	Caffeic acid O-methyltransferase is involved in the synthesis of melatonin by methylating N-acetylserotonin in Arabidopsis.	J. Pineal Res.	57(2)	219-27	2014		
40584	25111047	Devanna N.B., Vijayan J., Sharma T.R.	The blast resistance gene Pi54of cloned from Oryza officinalis interacts with AVR-Pi54 through its novel non-LRR domains.	PLoS ONE	9(8)	e104840	2014		
40585	25149369	Zuo J., Li J.	Molecular Genetic Dissection of Quantitative Trait Loci Regulating Rice grain size.	Annu. Rev. Genet.			2014		
40586	25081486	Wang H., Zhang L., Cai Q., Hu Y., Jin Z., Zhao X., Fan W., Huang Q., Luo Z., Chen M., Zhang D., Yuan Z.	OsMADS32 interacts with PI-like proteins and regulates rice flower development.	J Integr Plant Biol			2014		
40587	25047511	Nie Y., Huang F., Dong S., Li L., Gao P., Zhao H., Wang Y., Han S.	Identification of inositol 1,4,5-trisphosphate-binding proteins by heparin-agarose affinity purification and LTQ ORBITRAP MS in Oryza sativa.	Proteomics	14(20)	2335-8	2014		
40588	25118653	Chauhan R., Jasrai Y., Pandya H.	In silico analysis for five major cereal crops phytocystatins.	Interdiscip Sci			2014		
40589	24742074	Wu W., Wang L., Zhang S., Li Z., Zhang Y., Lin F., Pan Q.	Stepwise arms race between AvrPik and Pik alleles in the rice blast pathosystem.	Mol. Plant Microbe Interact.	27(8)	759-69	2014		
40590	25122453	Yang S., Murphy R.L., Morishige D.T., Klein P.E., Rooney W.L., Mullet J.E.	Sorghum phytochrome B inhibits flowering in long days by activating expression of SbPRR37 and SbGHD7, repressors of SbEHD1, SbCN8 and SbCN12.	PLoS ONE	9(8)	e105352	2014		
40591	25121640	Babiker E.M., Gordon T., Jackson E., Chao S., Harrison S., Carson M., Obert D., Bonman J.M.	Quantitative trait loci from two genotypes of oat (Avena sativa L.) conditioning resistance to Puccinia coronata.	Phytopathology			2014		
40592	25098420	Christoff A.P., Margis R.	The diversity of rice phytocystatins.	Mol. Genet. Genomics			2014		
40593	25093982	Hasegawa M., Mitsuhara I., Seo S., Okada K., Yamane H., Iwai T., Ohashi Y.	Analysis on blast fungus-responsive characters of a flavonoid phytoalexin sakuranetin; accumulation in infected rice leaves, antifungal activity and detoxification by fungus.	Molecules	19(8)	11404-18	2014		
40594	25128291	Misyura M., Guevara D., Subedi S., Hudson D., McNicholas P.D., Colasanti J., Rothstein S.J.	Nitrogen limitation and high density responses in rice suggest a role for ethylene under high density stress.	BMC Genomics	15	681	2014		
40595	25238657	Van Hove J., Stefanowicz K., De Schutter K., Eggermont L., Lannoo N., Al Atalah B., Van Damme EJ.	Transcriptional profiling of the lectin ArathEULS3 from Arabidopsis thaliana toward abiotic stresses.	J. Plant Physiol.	171(18)	1763-1773	2014		
40596	25145641	Gould B., McCouch S., Geber M.	Variation in soil aluminium tolerance genes is associated with local adaptation to soils at the Park Grass Experiment.	Mol. Ecol.			2014		
40597	23956237	Xu H.X., He X.C., Zheng X.S., Yang Y.J., Lu Z.X.	Influence of rice black streaked dwarf virus on the ecological fitness of non-vector planthopper Nilaparvata lugens (Hemiptera: Delphacidae).	Insect Science	21(4)	507-14	2014		
40598	25122473	Burgos N.R., Singh V., Tseng T.M., Black H., Young N.D., Huang Z., Hyma K.E., Gealy D.R., Caicedo A.L.	The impact of herbicide-resistant rice technology on phenotypic diversity and population structure of United States weedy rice.	Plant Physiol.	166(3)	1208-20	2014		
40599	25140876	Yu C., Su S., Xu Y., Zhao Y., Yan A., Huang L., Ali I., Gan Y.	The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.	PLoS ONE	9(8)	e105597	2014		
40600	25189236	Divya B., Biswas A., Robin S., Rabindran R., Joel A.J.	Gene interactions and genetics of blast resistance and yield attributes in rice (Oryza sativa L.).	J. Genet.	93(2)	415-24	2014	PI1,PIZ,PIKH,PI33	Pi1, Pi-1, Pi1-5C, Pi1-6C,Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi33(t), RMg70, Pi-33(t), Pi-33, Pi33
40601	25161881	Onda Y., Kobori Y.	Differential activity of rice protein disulfide isomerase family members for disulfide bond formation and reduction.	FEBS Open Bio	4	730-4	2014		
40602	25168932	Alam M.M., Tanaka T., Nakamura H., Ichikawa H., Kobayashi K., Yaeno T., Yamaoka N., Shimomoto K., Takayama K., Nishina H., Nishiguchi M.	Overexpression of a rice Heme activator protein gene (OsHAP2E) confers resistance to pathogens, salinity and drought, and increases photosynthesis and tiller number.	Plant Biotechnol. J.			2014		
40603	25189234	Kulkarni K.P., Vishwakarma C., Sahoo S.P., Lima J.M., Nath M., Dokku P., Gacche R.N., Mohapatra T., Robin S., Sarla N., Seshashayee M., Singh A.K., Singh K., Singh N.K., Sharma R.P.	A substitution mutation in OsCCD7 cosegregates with dwarf and increased tillering phenotype in rice.	J. Genet.	93(2)	389-401	2014		
40604	25073727	Qu G., Quan S., Mondol P., Xu J., Zhang D., Shi J.	Comparative metabolomic analysis of wild type and MADS3 mutant rice anthers.	J Integr Plant Biol	56(9)	849-63	2014		
40605	25157260	Kusumi K., Iba K.	Establishment of the chloroplast genetic system in rice during early leaf development and at low temperatures.	Front Plant Sci	5	386	2014		
40606	25219318	Nada R.M., Abogadallah G.M.	Aquaporins are major determinants of water use efficiency of rice plants in the field.	Plant Sci.	227	165-80	2014		
40607	25142326	Feng Z., Zhang L., Yang C., Wu T., Lv J., Chen Y., Liu X., Liu S., Jiang L., Wan J.	EF8 is involved in photoperiodic flowering pathway and chlorophyll biogenesis in rice.	Plant Cell Rep.			2014		
40608	25141278	He X., Xu H., Gao G., Zhou X., Zheng X., Sun Y., Yang Y., Tian J., Lu Z.	Virus-mediated chemical changes in rice plants impact the relationship between non-vector planthopper Nilaparvata lugens St?l and its egg parasitoid Anagrus nilaparvatae Pang et Wang.	PLoS ONE	9(8)	e105373	2014		
40609	25177324	Balzan S., Johal G.S., Carraro N.	The role of auxin transporters in monocots development.	Front Plant Sci	5	393	2014		
40610	25138576	Wang X., Jin D., Wang Z., Guo H., Zhang L., Wang L., Li J., Paterson A.H.	Telomere-centric genome repatterning determines recurring chromosome number reductions during the evolution of eukaryotes.	New Phytol.			2014		
40611	25047395	Kim J.Y., Wu J., Kwon S.J., Oh H., Lee S.E., Kim S.G., Wang Y., Agrawal G.K., Rakwal R., Kang K.Y., Ahn I.P., Kim B.G., Kim S.T.	Proteomics of rice and Cochliobolus miyabeanus fungal interaction: Insight into proteins at intracellular and extracellular spaces.	Proteomics	14(20)	2307-18	2014		
40612	25151634	Singh P., Shah K.	Evidences for reduced metal-uptake and membrane injury upon application of nitric oxide donor in cadmium stressed rice seedlings.	Plant Physiol. Biochem.	83	180-4	2014		
40613	25109872	Lv W., Du B., Shangguan X., Zhao Y., Pan Y., Zhu L., He Y., He G.	BAC and RNA sequencing reveal the brown planthopper resistance gene BPH15 in a recombination cold spot that mediates a unique defense mechanism.	BMC Genomics	15	674	2014		
40614	24782137	E ZG., Zhang Y.P., Zhou J.H., Wang L.	Mini review roles of the bZIP gene family in rice.	Genet. Mol. Res.	13(2)	3025-36	2014		
40615	24974324	Al Atalah B., De Vleesschauwer D., Xu J., Fouquaert E., H?fte M., Van Damme EJ.	Transcriptional behavior of EUL-related rice lectins toward important abiotic and biotic stresses.	J. Plant Physiol.	171(12)	986-92	2014		
40616	24698809	Zhou M., Luo H.	Role of microRNA319 in creeping bentgrass salinity and drought stress response.	Plant Signal Behav	9	e28700	2014		
40617	24780313	Yu Q., Feilke K., Krieger-Liszkay A., Beyer P.	Functional and molecular characterization of plastid terminal oxidase from rice (Oryza sativa).	Biochim. Biophys. Acta	1837(8)	1284-92	2014		
40618	24754628	Quain M.D., Makgopa M.E., M?rquez-Garc?a B., Comadira G., Fernandez-Garcia N., Olmos E., Schnaubelt D., Kunert K.J., Foyer C.H.	Ectopic phytocystatin expression leads to enhanced drought stress tolerance in soybean (Glycine max) and Arabidopsis thaliana through effects on strigolactone pathways and can also result in improved seed traits.	Plant Biotechnol. J.	12(7)	903-13	2014		
40619	24771021	Zhao H., Huai Z., Xiao Y., Wang X., Yu J., Ding G., Peng J.	Natural variation and genetic analysis of the tiller angle gene MsTAC1 in Miscanthus sinensis.	Planta	240(1)	161-75	2014		
40620	25011296	Ji L., Li T.X., Zhang X.Z., Yu H.Y., Zheng Z.C.	[Characteristics of distribution and transportation of rice genotype with high nitrogen utilization efficiency at the late growth stage].	Ying Yong Sheng Tai Xue Bao	25(4)	1036-42	2014		
40621	24740395	Wang X., Li Y., Fang G., Zhao Q., Zeng Q., Li X., Gong H., Li Y.	Nitrite promotes the growth and decreases the lignin content of indica rice calli: a comprehensive transcriptome analysis of nitrite-responsive genes during in vitro culture of rice.	PLoS ONE	9(4)	e95105	2014		
40622	24746721	Gorantla J.N., Kumar S.N., Nisha G.V., Sumandu A.S., Dileep C., Sudaresan A., Kumar M.M., Lankalapalli R.S., Kumar B.S.	Purification and characterization of antifungal phenazines from a fluorescent Pseudomonas strain FPO4 against medically important fungi.	J Mycol Med	24(3)	185-92	2014		
40623	24721692	Zwickl D.J., Stein J.C., Wing R.A., Ware D., Sanderson M.J.	Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3.	Syst. Biol.	63(5)	645-59	2014		
40624	24832615	Li Z., Zhang Y., Liu L., Liu Q., Bi Z., Yu N., Cheng S., Cao L.	Fine mapping of the lesion mimic and early senescence 1 (lmes1) in rice (Oryza sativa).	Plant Physiol. Biochem.	80	300-7	2014		
40625	24723407	Yang H., Zhang X., Gaxiola R.A., Xu G., Peer W.A., Murphy A.S.	Over-expression of the Arabidopsis proton-pyrophosphatase AVP1 enhances transplant survival, root mass, and fruit development under limiting phosphorus conditions.	J. Exp. Bot.	65(12)	3045-53	2014		
40626	24771344	Lertampaiporn S., Thammarongtham C., Nukoolkit C., Kaewkamnerdpong B., Ruengjitchatchawalya M.	Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm.	Nucleic Acids Res.	42(11)	e93	2014		
40627	24786093	Zhu K., Min C., Xia H., Yang Y., Wang B., Chen K.	Characterisation of Indica Special Protein (ISP), a marker protein for the differentiation of Oryza sativa subspecies indica and japonica.	Int J Mol Sci	15(5)	7332-43	2014		
40628	25079420	Pan W., Wu C., Xue S., Hartley W.	Arsenic dynamics in the rhizosphere and its sequestration on rice roots as affected by root oxidation.	J Environ Sci (China)	26(4)	892-9	2014		
40629	24722991	Nomura Y., Izumi A., Fukunaga Y., Kusumi K., Iba K., Watanabe S., Nakahira Y., Weber A.P., Nozawa A., Tozawa Y.	Diversity in guanosine 3',5'-bisdiphosphate (ppGpp) sensitivity among guanylate kinases of bacteria and plants.	J. Biol. Chem.	289(22)	15631-41	2014		
40630	24766995	Peng B., Wang L., Fan C., Jiang G., Luo L., Li Y., He Y.	Comparative mapping of chalkiness components in rice using five populations across two environments.	BMC Genet.	15	49	2014		
40631	24711357	Wang Y.Y., Wei Y.Y., Dong L.X., Lu L.L., Feng Y., Zhang J., Pan F.S., Yang X.E.	Improved yield and Zn accumulation for rice grain by Zn fertilization and optimized water management.	J Zhejiang Univ Sci B	15(4)	365-74	2014		
40632	24720629	Zhu Y., Wu N., Song W., Yin G., Qin Y., Yan Y., Hu Y.	Soybean (Glycine max) expansin gene superfamily origins: segmental and tandem duplication events followed by divergent selection among subfamilies.	BMC Plant Biol.	14	93	2014		
40633	24706213	Yoshida S., Morita T., Shinozaki Y., Watanabe T., Sameshima-Yamashita Y., Koitabashi M., Kitamoto D., Kitamoto H.	Mannosylerythritol lipids secreted by phyllosphere yeast Pseudozyma antarctica is associated with its filamentous growth and propagation on plant surfaces.	Appl. Microbiol. Biotechnol.	98(14)	6419-29	2014		
40634	24744320	Yang H., Zhang Z., Yan R., Wang Y., Zhu D.	Draft Genome Sequence of Streptomyces sp. Strain PRh5, a Novel Endophytic Actinomycete Isolated from Dongxiang Wild Rice Root.	Genome Announc	2(2)		2014		
40635	24696519	Crowell S., Falc?o AX., Shah A., Wilson Z., Greenberg A.J., McCouch S.R.	High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama.	Plant Physiol.	165(2)	479-495	2014		
40636	24717398	Salem E.G., El Hissewy A., Agamy N.F., Abd El Barry D.	Assessment of the quality of bran and bran oil produced from some Egyptian rice varieties.	J Egypt Public Health Assoc	89(1)	29-34	2014		
40637	24915087	Wang W., Ma Y., Suo Y., Yan L., Zhang D., Miao C.	Crystallization and preliminary crystallographic analysis of defective pollen wall (DPW) protein from Oryza sativa.	Acta Crystallogr F Struct Biol Commun	70(Pt 6)	758-60	2014		
40638	24907524	Lucas J.A., Garc?a-Cristobal J., Bonilla A., Ramos B., Gutierrez-Ma?ero J.	Beneficial rhizobacteria from rice rhizosphere confers high protection against biotic and abiotic stress inducing systemic resistance in rice seedlings.	Plant Physiol. Biochem.	82	44-53	2014		
40639	24884676	Wang Y., Lin S., Song Q., Li K., Tao H., Huang J., Chen X., Que S., He H.	Genome-wide identification of heat shock proteins (Hsps) and Hsp interactors in rice: Hsp70s as a case study.	BMC Genomics	15	344	2014		
40640	24852592	Wu Y., Zhang W., Jiang J.	Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice.	PLoS Genet.	10(5)	e1004378	2014		
40641	24800811	Xu T., Gu L., Choi M.J., Kim R.J., Suh M.C., Kang H.	Comparative functional analysis of wheat (Triticum aestivum) zinc finger-containing glycine-rich RNA-binding proteins in response to abiotic stresses.	PLoS ONE	9(5)	e96877	2014		
40642	24793751	Han C., Wang K., Yang P.	Gel-based comparative phosphoproteomic analysis on rice embryo during germination.	Plant Cell Physiol.	55(8)	1376-94	2014		
40643	25055689	Tan L.M., Wu H., Li H., Zhou P., Li K.L., Wang J.R., Ge T.D., Yuan H.Z., Wu J.S.	[Input and distribution of rice photosynthesized carbon in the tillering stage under different nitrogen application following continuous 13C labeling].	Huan Jing Ke Xue	35(5)	1933-8	2014		
40644	24885077	Zhao K., Bartley L.E.	Comparative genomic analysis of the R2R3 MYB secondary cell wall regulators of Arabidopsis, poplar, rice, maize, and switchgrass.	BMC Plant Biol.	14	135	2014		
40645	24816929	Oono Y., Yazawa T., Kawahara Y., Kanamori H., Kobayashi F., Sasaki H., Mori S., Wu J., Handa H., Itoh T., Matsumoto T.	Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice.	PLoS ONE	9(5)	e96946	2014		
40646	24854982	Zhang H., Zhang J., Wei P., Zhang B., Gou F., Feng Z., Mao Y., Yang L., Zhang H., Xu N., Zhu J.K.	The CRISPR/Cas9 system produces specific and homozygous targeted gene editing in rice in one generation.	Plant Biotechnol. J.	12(6)	797-807	2014		
40647	24895563	Puteh A.B., Mondal M.M., Ismail M.R., Latif M.A.	Grain sterility in relation to dry mass production and distribution in rice (Oryza sativa L.).	Biomed Res Int	2014	302179	2014		
40648	24822269	Luzzatto-Knaan T., Kerem Z., Doron-Faigenboim A., Yedidia I.	Priming of protein expression in the defence response of Zantedeschia aethiopica to Pectobacterium carotovorum.	Mol. Plant Pathol.	15(4)	364-78	2014		
40649	24810734	Concia A.L., G?mez L., Parella T., Joglar J., Clap?s P.	Casuarine stereoisomers from achiral substrates: chemoenzymatic synthesis and inhibitory properties.	J. Org. Chem.	79(11)	5386-9	2014		
40650	25036129	Nomura Y., Nozawa A., Tozawa Y.	Biochemical analyses of ppGpp effect on adenylosuccinate synthetases, key enzymes in purine biosynthesis in rice.	Biosci. Biotechnol. Biochem.	78(6)	1022-5	2014		
40651	24884531	Spence C., Alff E., Johnson C., Ramos C., Donofrio N., Sundaresan V., Bais H.	Natural rice rhizospheric microbes suppress rice blast infections.	BMC Plant Biol.	14	130	2014		
40652	24843076	Lam P.Y., Zhu F.Y., Chan W.L., Liu H., Lo C.	Cytochrome P450 93G1 Is a Flavone Synthase II That Channels Flavanones to the Biosynthesis of Tricin O-Linked Conjugates in Rice.	Plant Physiol.	165(3)	1315-1327	2014	CYP93G1,CYP93F1	OsCYP93G1, OsFNSII, FNSII,OsCYP93F1
40653	24885990	Sandhu N., Singh A., Dixit S., Sta Cruz MT., Maturan P.C., Jain R.K., Kumar A.	Identification and mapping of stable QTL with main and epistasis effect on rice grain yield under upland drought stress.	BMC Genet.	15	63	2014		
40654	24976122	Liu Y., Fang J., Xu F., Chu J., Yan C., Schl?ppi MR., Wang Y., Chu C.	Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars.	J Genet Genomics	41(6)	327-38	2014		
40655	24874118	Sahoo R.K., Ansari M.W., Pradhan M., Dangar T.K., Mohanty S., Tuteja N.	A novel Azotobacter vinellandii (SRIAz 3) functions in salinity stress tolerance in rice.	Plant Signal Behav	9		2014		
40656	25017169	Yang L., Kawakatsu T., Wakasa Y., Yoine M., Takaiwa F.	RNA silencing is induced by the expression of foreign recombinant products in transgenic rice.	Plant Sci.	225	138-46	2014		
40657	25130735	Zhang Z., Chen X., Guan X., Liu Y., Chen H., Wang T., Mouekouba L.D., Li J., Wang A.	A genome-wide survey of homeodomain-leucine zipper genes and analysis of cold-responsive HD-Zip I members' expression in tomato.	Biosci. Biotechnol. Biochem.	78(8)	1337-49	2014		
40658	25209506	Tabara A., Oneda H., Murayama R., Matsui Y., Hirano A., Seguchi M.	Determination of hydrophobicity of dry-heated wheat starch granules using sucrose fatty acid esters (SFAE).	Biosci. Biotechnol. Biochem.	78(9)	1572-6	2014		
40659	24937154	Datta K., Sahoo G., Krishnan S., Ganguly M., Datta S.K.	Genetic stability developed for beta-carotene synthesis in BR29 rice line using dihaploid homozygosity.	PLoS ONE	9(6)	e100212	2014		
40660	24928872	Han L., Han C., Liu Z., Chen F., Jurat-Fuentes JL., Hou M., Peng Y.	Binding site concentration explains the differential susceptibility of Chilo suppressalis and Sesamia inferens to Cry1A-producing rice.	Appl. Environ. Microbiol.	80(16)	5134-40	2014		
40661	24987303	Mo Y.J., Jeung J.U., Shin W.C., Kim K.Y., Ye C., Redo?a ED., Kim B.K.	Effects of allelic variations in starch synthesis-related genes on grain quality traits of Korean nonglutinous rice varieties under different temperature conditions.	Breed. Sci.	64(2)	164-75	2014		
40662	24931499	M?ller AH., Sawicki A., Zhou S., Tabrizi S.T., Luo M., Hansson M., Willows R.D.	Inducing the oxidative stress response in Escherichia coli improves the quality of a recombinant protein: magnesium chelatase ChlH.	Protein Expr. Purif.	101	61-7	2014		
40663	24941328	Grosskinsky D.K., van der Graaff E., Roitsch T.	Abscisic acid-cytokinin antagonism modulates resistance against Pseudomonas syringae in tobacco.	Phytopathology			2014		
40664	25018764	Cantos C., Francisco P., Trijatmiko K.R., Slamet-Loedin I., Chadha-Mohanty PK.	Identification of "safe harbor" loci in indica rice genome by harnessing the property of zinc-finger nucleases to induce DNA damage and repair.	Front Plant Sci	5	302	2014		
40665	25110136	Aver'yanov AA., Lapikova V.P., Pasechnik T.D., Abramova O.S., Gaivoronskaya L.M., Kuznetsov V.V., Baker C.J.	Pre-illumination of rice blast conidia induces tolerance to subsequent oxidative stress.	Fungal Biol	118(8)	743-53	2014		
40666	24913626	Shiono K., Yamauchi T., Yamazaki S., Mohanty B., Malik A.I., Nagamura Y., Nishizawa N.K., Tsutsumi N., Colmer T.D., Nakazono M.	Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa).	J. Exp. Bot.	65(17)	4795-806	2014		
40667	25071406	Xu X., Zhang L., Liu B., Ye Y., Wu Y.	Characterization and mapping of a spotted leaf mutant in rice (Oryza sativa).	Genet. Mol. Biol.	37(2)	406-13	2014	_	SPL30
40668	24928870	Bao Z., Okubo T., Kubota K., Kasahara Y., Tsurumaru H., Anda M., Ikeda S., Minamisawa K.	Metaproteomic identification of diazotrophic methanotrophs and their localization in root tissues of field-grown rice plants.	Appl. Environ. Microbiol.	80(16)	5043-52	2014		
40669	25036124	Ochiai A., Sugai H., Harada K., Tanaka S., Ishiyama Y., Ito K., Tanaka T., Uchiumi T., Taniguchi M., Mitsui T.	Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability.	Biosci. Biotechnol. Biochem.	78(6)	989-97	2014		
40670	24987489	Satoh K., Saji S., Ito S., Shimizu H., Saji H., Kikuchi S.	Gene response in rice plants treated with continuous fog influenced by pH, was similar to that treated with biotic stress.	Rice (N Y)	7(1)	10	2014		
40671	24960559	Wu Z., Ge S.	The whole chloroplast genome of wild rice (Oryza australiensis).	Mitochondrial DNA		1-2	2014		
40672	24949743	Gaikwad K.B., Singh N., Bhatia D., Kaur R., Bains N.S., Bharaj T.S., Singh K.	Yield-enhancing heterotic QTL transferred from wild species to cultivated rice Oryza sativa L.	PLoS ONE	9(6)	e96939	2014		
40673	24968225	Li W.Y., Wang X., Li R., Li W.Q., Chen K.M.	Genome-wide analysis of the NADK gene family in plants.	PLoS ONE	9(6)	e101051	2014		
40674	24926322	Liu Y., Yang G.	Tc1-like transposable elements in plant genomes.	Mob DNA	5	17	2014		
40675	24905454	Midorikawa K., Kuroda M., Terauchi K., Hoshi M., Ikenaga S., Ishimaru Y., Abe K., Asakura T.	Additional nitrogen fertilization at heading time of rice down-regulates cellulose synthesis in seed endosperm.	PLoS ONE	9(6)	e98738	2014		
40676	24987299	Maeda H., Yamaguchi T., Omoteno M., Takarada T., Fujita K., Murata K., Iyama Y., Kojima Y., Morikawa M., Ozaki H., Mukaino N., Kidani Y., Ebitani T.	Genetic dissection of black grain rice by the development of a near isogenic line.	Breed. Sci.	64(2)	134-41	2014	_,_,_	OsbHLH016, Kala4, OSB2,Kala3,Kala1
40677	24915771	Muthamilarasan M., Bonthala V.S., Mishra A.K., Khandelwal R., Khan Y., Roy R., Prasad M.	C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses.	Funct. Integr. Genomics	14(3)	531-43	2014		
40678	24948834	Ohnishi Y., Hoshino R., Okamoto T.	Dynamics of Male and Female Chromatin during Karyogamy in Rice Zygotes.	Plant Physiol.	165(4)	1533-1543	2014		
40679	24894389	Lakshmanan M., Mohanty B., Lim S.H., Ha S.H., Lee D.Y.	Metabolic and transcriptional regulatory mechanisms underlying the anoxic adaptation of rice coleoptile.	AoB Plants	6		2014		
40680	25070039	Ghosh S., Gupta S.K., Jha G.	Identification and functional analysis of AG1-IA specific genes of Rhizoctonia solani.	Curr. Genet.	60(4)	327-41	2014		
40681	25056480	Chen M., Zhang C., Zi Q., Qiu D., Liu W., Zeng H.	A novel elicitor identified from Magnaporthe oryzae triggers defense responses in tobacco and rice.	Plant Cell Rep.	33(11)	1865-79	2014		
40682	25273131	Iizuka M., Wakasa Y., Tsuboi H., Asashima H., Hirota T., Kondo Y., Matsumoto I., Sumida T., Takaiwa F.	Prophylactic effect of the oral administration of transgenic rice seeds containing altered peptide ligands of type II collagen on rheumatoid arthritis.	Biosci. Biotechnol. Biochem.	78(10)	1662-8	2014		
40683	25255563	Gong J., Cao X., Cao Z., Bian Y., Yu S., Chen M.	[Determination of five arsenic species in rice by liquid chromatography-inductively coupled plasma-mass spectrometry].	Se Pu	32(7)	717-22	2014		
40684	25027708	Nguyen N.L., So K.K., Kim J.M., Kim S.H., Jang Y.S., Yang M.S., Kim D.H.	Expression and characterization of an M cell-specific ligand-fused dengue virus tetravalent epitope using Saccharomyces cerevisiae.	J. Biosci. Bioeng.			2014		
40685	25104955	Collado-Romero M., Al?s E., Prieto P.	Unravelling the proteomic profile of rice meiocytes during early meiosis.	Front Plant Sci	5	356	2014		
40686	25058577	Dong M., Gu J., Zhang L., Chen P., Liu T., Deng J., Lu H., Han L., Zhao B.	Comparative proteomics analysis of superior and inferior spikelets in hybrid rice during grain filling and response of inferior spikelets to drought stress using isobaric tags for relative and absolute quantification.	J Proteomics	109C	382-399	2014		
40687	25036388	Czarnecki O., Yang J., Wang X., Wang S., Muchero W., Tuskan G.A., Chen J.G.	Characterization of MORE AXILLARY GROWTH genes in Populus.	PLoS ONE	9(7)	e102757	2014		
40688	25320466	Etesami H., Mirseyed Hosseini H., Alikhani H.A.	Bacterial biosynthesis of 1-aminocyclopropane-1-caboxylate (ACC) deaminase, a useful trait to elongation and endophytic colonization of the roots of rice under constant flooded conditions.	Physiol Mol Biol Plants	20(4)	425-34	2014		
40689	25187684	Singha H.S., Chakraborty S., Deka H.	Stress induced MAPK genes show distinct pattern of codon usage in Arabidopsis thaliana, Glycine max and Oryza sativa.	Bioinformation	10(7)	436-42	2014		
40690	25048445	Li Y.L., Dai X.R., Yue X., Gao X.Q., Zhang X.S.	Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues.	Planta	240(4)	713-28	2014		
40691	25345046	Li L., Zhang X.Z., Li T.X., Yu H.Y., Ji L., Chen G.D.	[Characteristics of phosphorus uptake and use efficiency of rice with high yield and high phosphorus use efficiency].	Ying Yong Sheng Tai Xue Bao	25(7)	1963-70	2014		
40692	25084557	Li X., Qiao J., Yang L., Li X., Qiao S., Pang X., Tian F., Chen H., He C.	Mutation of alkyl hydroperoxide reductase gene AhpC of Xanthomonas oryzae pv. oryzae affects hydrogen peroxide accumulation during the rice-pathogen interaction.	Res. Microbiol.			2014		
40693	25015319	Rastogi S., Meena S., Bhattacharya A., Ghosh S., Shukla R.K., Sangwan N.S., Lal R.K., Gupta M.M., Lavania U.C., Gupta V., Nagegowda D.A., Shasany A.K.	De novo sequencing and comparative analysis of holy and sweet basil transcriptomes.	BMC Genomics	15	588	2014		
40694	25074414	Xu M., Shi N., Li Q., Mi H.	An active supercomplex of NADPH dehydrogenase mediated cyclic electron flow around Photosystem I from the panicle chloroplast of Oryza sativa.	Acta Biochim. Biophys. Sin. (Shanghai)	46(9)	757-65	2014		
40695	25056987	Delos D., Leineweber M.J., Chaudhury S., Alzoobaee S., Gao Y., Rodeo S.A.	The effect of platelet-rich plasma on muscle contusion healing in a rat model.	Am J Sports Med	42(9)	2067-74	2014		
40696	24923534	Li X.J., Zhang Y.F., Hou M., Sun F., Shen Y., Xiu Z.H., Wang X., Chen Z.L., Sun S.S., Small I., Tan B.C.	Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial NAD7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa).	Plant J.	79(5)	797-809	2014	NAD7,SMK1	nad7,Os_SMK1
40697	25023870	Wong D.C., Sweetman C., Ford C.M.	Annotation of gene function in citrus using gene expression information and co-expression networks.	BMC Plant Biol.	14	186	2014		
40698	25042427	Qin X., Zhang R., Zhang J., Shi Y.	Physiological efects of paichongding applied to rice on the Nilaparvata lugens (St? l), the brown planthopper.	Arch. Insect Biochem. Physiol.	87(2)	72-84	2014		
40699	25014054	Yang Y., Liu Y., Cao F., Chen X., Cheng L., Romeis J., Li Y., Peng Y.	Consumption of Bt rice pollen containing Cry1C or Cry2A protein poses a low to negligible risk to the silkworm Bombyx mori (Lepidoptera: Bombyxidae).	PLoS ONE	9(7)	e102302	2014		
40700	25037078	Kim J.G., Back K., Lee H.Y., Lee H.J., Phung T.H., Grimm B., Jung S.	Increased expression of Fe-chelatase leads to increased metabolic flux into heme and confers protection against photodynamically induced oxidative stress.	Plant Mol. Biol.	86(3)	271-87	2014		
40701	25039271	Sousa R.H., Carvalho F.E., Ribeiro C.W., Passaia G., Cunha J.R., Lima-Melo Y., Margis-Pinheiro M., Silveira J.A.	Peroxisomal APX knockdown triggers antioxidant mechanisms favourable for coping with high photorespiratory H2 O2 induced by CAT deficiency in rice.	Plant Cell Environ.			2014	APX4	OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4
40702	24985701	Phelix C.F., Feltus F.A.	Plant stress biomarkers from biosimulations: the Transcriptome-To-Metabolome(?) (TTM(?) ) technology - effects of drought stress on rice.	Plant Biol (Stuttg)			2014		
40703	25096975	Etemadi M., Gutjahr C., Couzigou J.M., Zouine M., Lauressergues D., Timmers A., Audran C., Bouzayen M., B?card G., Combier J.P.	Auxin perception is required for arbuscule development in arbuscular mycorrhizal symbiosis.	Plant Physiol.	166(1)	281-92	2014		
40704	25104001	Filiz E., Tombulo?lu H.	In Silico Analysis of DREB Transcription Factor Genes and Proteins in Grasses.	Appl. Biochem. Biotechnol.	174(4)	1272-85	2014		
40705	25100144	Ma J., Jiang Q.T., Wei L., Yang Q., Zhang X.W., Peng Y.Y., Chen G.Y., Wei Y.M., Liu C., Zheng Y.L.	Conserved structure and varied expression reveal key roles of phosphoglucan phosphatase gene starch excess 4 in barley.	Planta			2014		
40706	25149470	Zhang H., Wu Q., Cao S., Zhao T., Chen L., Zhuang P., Zhou X., Gao Z.	A novel protein elicitor (SsCut) from Sclerotinia sclerotiorum induces multiple defense responses in plants.	Plant Mol. Biol.	86(4-5)	495-511	2014		
40707	25157851	Singh U.M., Chandra M., Shankhdhar S.C., Kumar A.	Transcriptome wide identification and validation of calcium sensor gene family in the developing spikes of finger millet genotypes for elucidating its role in grain calcium accumulation.	PLoS ONE	9(8)	e103963	2014		
40708	25133580	Geng Y., Pang B., Hao C., Tang S., Zhang X., Li T.	Expression of wheat high molecular weight glutenin subunit 1Bx is affected by large insertions and deletions located in the upstream flanking sequences.	PLoS ONE	9(8)	e105363	2014		
40709	25162680	Zhou T., Gao C., Du L., Feng H., Wang L., Lan Y., Sun F., Wei L., Fan Y., Shen W., Zhou Y.	Genetic analysis and QTL detection for resistance to white tip disease in rice.	PLoS ONE	9(8)	e106099	2014		
40710	25122481	Rajeswaran R., Golyaev V., Seguin J., Zvereva A., Farinelli L., Pooggin M.	Interactions of rice tungro bacilliform pararetrovirus and its protein P4 with plant RNA silencing machinery.	Mol. Plant Microbe Interact.			2014		
40711	25093500	Uraji M., Arima J., Inoue Y., Harazono K., Hatanaka T.	Application of two newly identified and characterized feruloyl esterases from Streptomyces sp. in the enzymatic production of ferulic acid from agricultural biomass.	PLoS ONE	9(8)	e104584	2014		
40712	25168432	Zanin L., Tomasi N., Wirdnam C., Meier S., Komarova N.Y., Mimmo T., Cesco S., Rentsch D., Pinton R.	Isolation and functional characterization of a high affinity urea transporter from roots of Zea mays.	BMC Plant Biol.	14	222	2014		
40713	25129550	Christeller J.T., Galis I.	alpha-linolenic acid concentration and not wounding per se is the key regulator of octadecanoid (oxylipin) pathway activity in rice (Oryza sativa L.) leaves.	Plant Physiol. Biochem.	83	117-25	2014		
40714	25137124	Lindquist E., Alezzawi M., Aronsson H.	Bioinformatic indications that COPI- and clathrin-based transport systems are not present in chloroplasts: an Arabidopsis model.	PLoS ONE	9(8)	e104423	2014		
40715	25129148	Wang J.M., Chen X.P., Liang Y.Y., Zhu H.J., Ding J.T., Peng Y.F.	Influence of transgenic rice expressing a fused cry1Ab/1Ac protein on frogs in paddy fields.	Ecotoxicology	23(9)	1619-28	2014		
40716	25258710	Nadarajah K., Omar N.S., Rosli M.M., Shin Tze O.	Molecular Characterization and Screening for Sheath Blight Resistance Using Malaysian Isolates of Rhizoctonia solani.	Biomed Res Int	2014	434257	2014		
40717	25105299	Li G., Wang Y., Liu B., Zhang G.	Transgenic Bacillus thuringiensis (Bt) rice is safer to aquatic ecosystems than its non-transgenic counterpart.	PLoS ONE	9(8)	e104270	2014		
40718	25338392	Lei M., Zeng M., Liao B.H., Hu L.Q., Zhou H., Long S.B.	[Effects of phosphorus-containing substances on arsenic uptake by rice].	Huan Jing Ke Xue	35(8)	3149-54	2014		
40719	25143195	Martini L.F., Burgos N.R., Noldin J.A., de Avila LA., Salas R.A.	Absorption, translocation and metabolism of bispyribac-sodium on rice seedlings under cold stress.	Pest Manag. Sci.			2014		
40720	25111805	Chen S., Wang D., Xu C., Ji C., Zhang X., Zhao X., Zhang X., Chauhan B.S.	Responses of super rice (Oryza sativa L.) to different planting methods for grain yield and nitrogen-use efficiency in the single cropping season.	PLoS ONE	9(8)	e104950	2014		
40721	25132047	Turan S., Tripathy B.C.	Salt-stress induced modulation of chlorophyll biosynthesis during de-etiolation of rice seedlings.	Physiol Plant			2014		
40722	25150455	Ma R., Shen J., Wu J., Tang Z., Shen Q., Zhao F.J.	Impact of agronomic practices on arsenic accumulation and speciation in rice grain.	Environ. Pollut.	194	217-23	2014		
40723	20825577	Chen N., Xu Y., Wang X., Cheng D.U., Jizhou D.U., Yuan M., Xu Z., Chong K.	OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress.	Plant Cell Environ.	34(1)	52-64	2011	_	OsRAN2, RAN2
40724	11910009	Asano T., Kunieda N., Omura Y., Ibe H., Kawasaki T., Takano M., Sato M., Furuhashi H., Mujin T., Takaiwa F., Chuan-yin Wu Cy, Tada Y., Satozawa T., Sakamoto M., Shimada H.	Rice SPK, a calmodulin-like domain protein kinase, is required for storage product accumulation during seed development: phosphorylation of sucrose synthase is a possible factor.	Plant Cell	14(3)	619-28	2002	RSUS1,SPK,RSUS2,RSUS3	sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111
40725	21167079	Wang L., Guo K., Li Y., Tu Y., Hu H., Wang B., Cui X., Peng L.	Expression profiling and integrative analysis of the CESA/CSL superfamily in rice.	BMC Plant Biol.	10	282	2010	CESA8,CSLF7,CSLE1,CSLF2,CSLC1,CSLC9,CSLC10,CSLH3,CSLA6,CESA7,CSLH2,CESA2,ND1,BC6,CSLA1,CSLA2,CSLA3,CSLA5,CSLA7,CSLA9,CSLC2,CSLC3,CSLC7,CSLD1,CSLD2,CSLD3,CSLF1,CSLF4,CSLH1,CSLA11,CSLE6,CSLF8,CSLF9,CESA6,CESA11,CSLD5,CESA5,CSLE2,CESA3,CSLF6,CESA1,BC7,CSLF3,CESA10,CSLA4	OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCslF7, OsCSLF7 ,OsCslE1, OsCSLE1 ,OsCslF2, OsCSLF2,OsCslC1, OsCSLC1,OsCslC9, OsCSLC9,OsCslC10, OsCSLC10,OsCslH3, OsCSLH3,OsCslA6, OsCSLA6,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCslH2, OsCSLH2 ,OsCesA2, OsCESA2, OS_CESA02,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCslA1, OsCSLA1 ,OsCslA2, OsCSLA2,OsCslA3, OsCSLA3 ,OsCslA5, OsCSLA5 ,OsCslA7, OsCSLA7,OsCslA9, OsCSLA9 ,OsCslC2, OsCSLC2 ,OsCslC3, OsCSLC3 ,OsCslC7, OsCSLC7 ,csld1, OsCSLD1, OsCslD1,OsCslD2, OsCSLD2 ,OsCSLD3,OsCslF1, OsCSLF1 ,OsCslF4, OsCSLF4 ,OsCslH1, OsCSLH1 ,OsCslA11, OsCSLA11 ,OsCslE6, OsCSLE6,OsCslF8, OsCSLF8,OsCslF9, OsCSLF9,OsCesA6, OsCESA6, OS_CESA06,OsCesA11, OsCESA11, OsCLD1, CLD1,OsCSLD5,OsCesA5, OsCESA5, OS_CESA05,OsCslE2, OsCSLE2 ,OsCesA3, OsCESA3, OS_CESA03,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCslF3, OsCSLF3 ,OsCesA10, OsCESA10,OsCslA4, OsCSLA4 
40726	0	Zang Y., Wang Q., Xue C., Li M., Wen R., Xiao W.	Rice ubc13, a candidate housekeeping gene, is required for K63-linked polyubiquitination and tolerance to DNA damage	Rice (N Y)	5	24-34	2012	_	OsUbc13, Ubc13, OsUBC47, UBC47
40727	17689048	Pavlopoulou A., Kossida S.	Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolution.	Genomics	90(4)	530-41	2007	MET1B,MET1A	OsMET1b, OsMET1-2, MET1b, MET1,OsMET1a, OsMET1-1, MET1a, MET1-1
40728	23989647	Zmie?ko A.a, Samelak A.b, Koz?owski P.a, Figlerowicz M.a b	Copy number polymorphism in plant genomes	Theoretical and Applied Genetics	127	1-18	2014		
40729	0	Fujita M., Shinozaki K.	Identification of polyamine transporters in plants: Paraquat transport provides crucial clues	Plant and Cell Physiology	55	855-861	2014	PUT1,PUT2,PUT3	OsPUT1, PUT, OsLAT1 ,OsPUT2, OsLAT7 ,OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 
40730	0	Lim S.D.a, Lee C.b, Jang C.S.a	The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis	Plant, Cell and Environment	37	1097-1113	2014		
40731	0	Jo H.J., Kong J.N., Lim J.K., Kong K.H.	Site-directed mutagenesis of evolutionarily conserved serine residues in the N-terminal domain of rice Phi-class glutathione S-transferase F5	Journal of Molecular Catalysis B: Enzymatic	106	71-75	2014	GSTF5	OsGSTF5, OsGST F5
40732	0	Moon J.C.a b, Ham D.J.a, Hwang S.G.a, Park Y.C.a, Lee C.c, Jang C.S.a	Molecular characterization of a heat inducible rice gene, OsHSP1, and implications for rice thermotolerance	Genes and Genomics	36	151-161	2014		
40733	0	Park S.H.a, Lim H.b, Hyun S.J.b, Yun D.W.b, Yoon U.H.b, Ji H.b, Kim T.H.b, Eun M.Y.c, Kim Y.H.d, Lee G.S.b	Wound-inducible expression of the OsDof1 gene promoter in a Ds insertion mutant and transgenic plants	Plant Biotechnol Rep	8	305-313	2014	RDD2	OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3
40734	0	Akter M.B.a b, Piao R.a, Kim B.a, Lee Y.a, Koh E.a, Koh H.J.a	Fine mapping and candidate gene analysis of a new mutant gene for panicle apical abortion in rice	Euphytica	197	387-398	2014	AHA7	OSA7, OsA7, osAHA7, AHA7, PAA-Hwa
40735	0	Lee S.a c, Jia M.H.b, Jia Y.b, Liu G.a d	Tagging quantitative trait loci for heading date and plant height in important breeding parents of rice (Oryza sativa)	Euphytica	197	191-200	2014		
40736	0	Yang D.W.a, Zheng X.H.a, Cheng C.P.a, Wang W.D.b, Xing D.H.c, Lu L.B.a, Liu C.D.a, Ye N.a, Zeng M.J.a, Ye X.F.a	A dwarfing mutant caused by deactivation function of alpha subunit of the heterotrimeric G-protein in rice	Euphytica	197	145-159	2014	D1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
40737	0	B?langer S.a, Gauthier M.a, Jean M.a, Sato K.b, Belzile F.a	Genomic characterization of the Hordeum vulgare DEP1 (HvDEP1) gene and its diversity in a collection of barley accessions	Euphytica	198	29-41	2014		
40738	0	Kashiwagi T.	Identification of quantitative trait loci for resistance to bending-type lodging in rice (Oryza sativa L.)	Euphytica	198	353-367	2014		
40739	0	Cingel A.a, Savi? J.a, ?osi? T.a, Zdravkovi?-Kora? S.a, Mom?ilovi? I.a, Smigocki A.b, Ninkovi? S.a	Pyramiding rice cystatin OCI and OCII genes in transgenic potato (Solanum tuberosum L.) for resistance to Colorado potato beetle (Leptinotarsa decemlineata Say)	Euphytica	198	425-438	2014	OC2,OC1	Oc2*, Oc2, OC-II, OC-III, OCII, OsCYS2,Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
40740	0	Zhou X.a b, Jenks M.A.c, Liu J.a, Liu A.a b, Zhang X.a b, Xiang J.a, Zou J.a, Peng Y.a, Chen X.a b	Overexpression of Transcription Factor OsWR2 Regulates Wax and Cutin Biosynthesis in Rice and Enhances its Tolerance to Water Deficit	Plant Molecular Biology Reporter	32	719-731	2014	ERF1,_,_,_,CYP86A7-1,_,ERF3,_,_,CYP86A7-2,CYP86A7-3,_,_,WSL1,_,_,_,_	Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1,OsGL1-7, CER2, CER1, OsCER1, OsCER2,CER10, OsCER10,KCS1, OsKCS1,CYP86A7-1, OsCYP86A7-1,OsCHS, FAE, OsFAE1,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,GPDH1, OsGPDH1-1,GPDH2, OsGPDH1-2,CYP86A7-2, OsCYP86A7-2,CYP86A7-3, OsCYP86A7-3,MAH1, OsMAH1, OsCYP96B3, CYP96B3,FATB1, OsFATB1,WSL1, FAE', OsFAE1', OsCER6,CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6 ,FDH2, OsFDH2,KCR1, OsKCR1,LACS1, OsLACS1
40741	24927545	Bao Y.a b c, Aggarwal P.b, Robbins II N.E.a d, Sturrock C.J.e, Thompson M.C.e, Tan H.Q.b, Tham C.b, Duan L.a, Rodriguez P.L.f, Vernoux T.g, Mooney S.J.e, Bennett M.J.e h, Dinneny J.R.a b c	Plant roots use a patterning mechanism to position lateral root branches toward available water	Proc. Natl. Acad. Sci. U.S.A.	111	9319-9324	2014		
40742	24753598	Doust A.N.a, Lukens L.b, Olsen K.M.c, Mauro-Herrera M.a, Meyer A.b, Rogers K.a	Beyond the single gene: How epistasis and gene-byenvironment effects influence crop domestication	Proc. Natl. Acad. Sci. U.S.A.	111	6178-6183	2014		
40743	25034662	Priya R., Siva R.	Phylogenetic analysis and evolutionary studies of plant carotenoid cleavage dioxygenase gene	Gene	548	223-233	2014	D17,D10,_,_,_	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,OsCCD1, CCD1,OsCCD8d,OsCCD8a, OsCCD8c, CCD8a, CCD8c
40744	0	Pachecoy M.I.a b, Ramirez I.A.a c, Marin A.b, Pontaroli A.C.a d	Assessment of cold tolerance at early developmental stages and allelic variation at candidate genes in South American rice germplasm	Euphytica	197	423-434	2014	GSTZ1,GSTZ2,CDPK13	OsGSTZ1, GSTZ-1,OsGSTZ2, GSTZ-2,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2
40745	0	Baltazar M.D.a b, Ignacio J.C.I.a, Thomson M.J.a, Ismail A.M.a, Mendioro M.S.b, Septiningsih E.M.a	QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping	Euphytica	197	251-260	2014		
40746	24622186	Tollefson J.	Energy: Islands of light	Nature	507	154-156	2014		
40747	0	Nguyen H.T.T.a c, Van Pham C.b, Bertin P.c	The effect of nitrogen concentration on nitrogen use efficiency and related parameters in cultivated rices (Oryza sativa L. subsp. indica and japonica and O. glaberrima Steud.) in hydroponics	Euphytica	198	137-151	2014		
40748	25035499	Marcussen T.a, Sandve S.R.a, Heier L.b, Spannagl M.c, Pfeifer M.c, Jakobsen K.S.d, Wulff B.B.H.e, Steuernagel B.e, Mayer K.F.X.c, Olsen O.A.a	Ancient hybridizations among the ancestral genomes of bread wheat	Science	345		2014		
40749	0	Kushwaha H.R.a, Singla-Pareek S.L.b, Pareek A.c	Putative osmosensor-OsHK3b-a histidine kinase protein from rice shows high structural conservation with its ortholog AtHK1 from Arabidopsis	Journal of Biomolecular Structure and Dynamics	32	1318-1332	2014		
40750	0	Kamrul Huda K.M., Akhter Banu M.S., Yadav S., Sahoo R.K., Tuteja R., Tuteja N.	Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins	Plant Physiology and Biochemistry	82	229-238	2014	WRKY79,DOF27,_,PI21,_,_,_,ACA11,_,_,_,_,HD16,UBC	OsWRKY79, WRKY-79,OsDof27, Dof27, OsDof-27,,pi21, rMg40,,,,osACA11, OsACA6, OsACA5, OsPM4ATP8,,,CAMK ,,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1,UBC, OsUBC32, UBC32
40751	0	Kuijt S.J.H.a e, Greco R.a f, Agalou A.a, Shao J.a, 't Hoen C.C.J.a, Overnas E.b g, Osnato M.c, Curiale S.c, Meynard D.d, van Gulik R.a, Maraschin S.F.a, Atallah M.a h, de Kam R.J.a, Lamers G.E.M.a, Guiderdoni E.d, Rossini L.c, Meijer A.H.a, Ouwerkerk P.B.F.a	Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX Families of Transcription Factors	Plant Physiol.	164	1952-1966	2014		
40752	0	Khattab H.I.a, Emam M.A.b, Emam M.M.a, Helal N.M.a, Mohamed M.R.b	Effect of selenium and silicon on transcription factors NAC5 and DREB2A involved in drought-responsive gene expression in rice	Biol. Plant.	58	265-273	2014	_,RAB16B,RDCP1,DREB2A,NAC5	OsCMO,rab21, OsLEA28, OsRAB16D, OsRAB16b,OsRDCP1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009
40753	0	Garcia-Morales S.a, Gomez-Merino F.C.b, Trejo-Tellez L.I.a	NAC transcription factor expression, amino acid concentration and growth of elite rice cultivars upon salt stress	Acta Physiologiae Plantarum	36	1927-1936	2014	NAC139,NAC88,NAC95,NAC1,Y37,NAC122,NAC14,NAC104,NAC61,_,NAC56,NAC121,BET1,NAC32,NAC63,NAC28,NAC135,_,NAC6,NAC2,NAC5,NAC96	ONAC139, OsNAM,ONAC088, ONAC88,ONAC095, ONAC95,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027,NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1,OsNAC10, NAC10, ONAC122, NAC122,ONAC014, ONAC14, OsNAC14, NAC14,OMTN6, ONAC104,ONAC061, ONAC61,ONAC001, ONAC1,ONAC056, ONAC56, OsSWN5,ONAC121,BET1, ONAC081, ONAC81, NAC81,ONAC032, ONAC32, ONAC056, ONAC56,ONAC063, ONAC63,ONAC028, ONAC28,ONAC135,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,NAC94, ONAC096, ONAC96, NAC4, OsNAC4
40754	0	Guglielminetti L., Volterrani M.	Effect of ethanol on the expression of two fructokinases in rice seedlings	Plant Prod. Sci.	17	305-310	2014	_,_	OsFKI, OsFK2,OsFKII, OsFK1, FKII, FK1
40755	0	Sperandio M.V.L.a, Santos L.A.a, de Araujo O.J.L.a, Braga R.P.a, Coelho C.P.a, de Matos Nogueira E.b, Fernandes M.S.a, de Souza S.R.c	Response of nitrate transporters and PM H+-ATPase expression to nitrogen flush on two upland rice varieties contrasting in nitrate uptake kinetics	Aust J Crop Sci	8	568-576	2014	AHA2,NAR2.1,NRT2.1,AHA7,NRT2.2	OSA2, OsA2, osAHA2, AHA2, OsPMA2,OsNAR2.1, OsNRT3.1A,OsNRT2.1, OsNRT2.2,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa,OsNRT2.2, OsNRT2.1
40756	0	Guevara D.R., Bi Y.M., Rothstein S.J.	Identification of regulatory genes to improve nitrogen use efficiency	Canadian Journal of Plant Science	94	1009-1012	2014	_	UDP-GT, OsENOD93-1
40757	0	Passaia G.a, Caverzan A.a b, Fonini L.S.a b, Carvalho F.E.L.c, Silveira J.A.G.c, Margis-Pinheiro M.a	Chloroplastic and mitochondrial GPX genes play a critical role in rice development	Biol. Plant.	58	375-378	2014	GPX4,GPX1	OsGpx4, GPX4, OsGPx04, OsGPX4,OsGpx1, GPX1, OsGPx01, OsGPX1
40758	0	Tsuge S.a, Furutani A.b, Ikawa Y.a	Regulatory network of hrp gene expression in Xanthomonas oryzae pv. oryzae	Journal of General Plant Pathology	80	303-313	2014		
40759	0	Socha A.L., Guerinot M.L.	Mn-euvering manganese: The role of transporter gene family members in manganese uptake and mobilization in plants	Front Plant Sci	5		2014		
40760	0	Hassanien R.H.E.a b, Hou T.Z.a c, Li Y.F.a, Li B.M.a	Advances in Effects of Sound Waves on Plants	Journal of Integrative Agriculture	13	335-348	2014		
40761	0	Tanaka Y.a, Kumagai E.b, Tazoe Y.c d, Adachi S.e f, Homma K.a	Leaf photosynthesis and its genetic improvement from the perspective of energy flow and CO2 diffusion	Plant Prod. Sci.	17	111-123	2014		
40762	0	He H.J.a b c, Zhang D.Q.a b c, Tang L.d, Yang D.b c	Recent advance on biological function and signal pathway of Receptor-like cytoplasmic kinase in plants	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	885-890	2014		
40763	0	Mirouze M.a, Vitte C.b	Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes	J. Exp. Bot.	65	2801-2812	2014		
40764	0	Singh M.K., Prasad S.K.	Agronomic aspects of zinc biofortification in rice (Oryza sativa l.)	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	84	613-623	2014		
40765	0	Houston M.	The role of nutrition and nutritional supplements in the treatment of dyslipidemia	Clin Lipidol	9	333-354	2014		
40766	0	Nhamo N.a, Rodenburg J.a, Zenna N.a, Makombe G.a b, Luzi-Kihupi A.a c	Narrowing the rice yield GAP in east and Southern Africa: Using and adapting existing technologies	Agric Syst	131	45-55	2014		
40767	0	Ma J.F.a b, Chen Z.C.a, Shen R.F.b	Molecular mechanisms of Al tolerance in gramineous plants	Plant Soil	381	1-12	2014		
40768	0	Mongon J.a c, Konnerup D.b, Colmer T.D.b, Rerkasem B.a	Responses of rice to Fe2+ in aerated and stagnant conditions: Growth, root porosity and radial oxygen loss barrier	Functional Plant Biology	41	922-929	2014		
40769	0	Brinch-Pedersen H., Madsen C.K., Holme I.B., Dionisio G.	Increased understanding of the cereal phytase complement for better mineral bio-availability and resource management	J. Cereal Sci.	59	373-381	2014		
40770	0	Makhzoum A.a, Benyammi R.b, Moustafa K.c, Tr?mouillaux-Guiller J.d	Recent advances on host plants and expression cassettes' structure and function in plant molecular pharming	BioDrugs	28	145-159	2014		
40771	24766890	Macho A.P., Zipfel C.	Plant PRRs and the activation of innate immune signaling	Mol. Cell	54	263-272	2014		
40772	0	Kurihara-Yonemoto S.	Post-transcriptional regulation in mitochondria of rice and wheat at low temperatures	Jpn. Agric. Res. Q.	48	17-28	2014		
40773	0	Chen S.C.a, Sun G.X.a, Chen Z.a, Chen F.L.c, Zhu Y.G.a b	Progresses on selenium metabolism and interaction with heavy metals in higher plants	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	612-624	2014		
40774	0	Sharma T.R.a, Das A.b, Thakur S.a, Jalali B.L.c	Recent understanding on structure, function and evolution of plant disease resistance genes	Proceedings of the Indian National Science Academy	80	83-93	2014		
40775	0	Glassop D., Rae A.L., Bonnett G.D.	Sugarcane Flowering Genes and Pathways in Relation to Vegetative Regression	Sugar Tech	16	235-240	2014		
40776	0	Kim G.Y.a, Gutierrez J.b, Jeong H.C.a, Lee J.S.a, Haque M.D.M.b, Kim P.J.b c	Effect of intermittent drainage on methane and nitrous oxide emissions under different fertilization in a temperate paddy soil during rice cultivation	Journal of the Korean Society for Applied Biological Chemistry	57	229-236	2014		
40777	0	Siddiqui Z.S.a b, Cho J.I.a, Kwon T.R.a, Ahn B.O.a, Lee K.S.a, Jeong M.J.a, Ryu T.H.a, Lee S.K.a, Park S.C.a, Park S.H.a	Physiological mechanism of drought tolerance in transgenic rice plants expressing Capsicum annuum methionine sulfoxide reductase B2 (CaMsrB2) gene	Acta Physiologiae Plantarum	36	1143-1153	2014		
40778	0	Byeon Y., Back K.	Melatonin synthesis in rice seedlings in vivo is enhanced at high temperatures and under dark conditions due to increased serotonin N-acetyltransferase and N-acetylserotonin methyltransferase activities	J. Pineal Res.	56	189-195	2014		
40779	0	Kim N.S.a, Yu H.Y.a, Chung N.D.a, Kwon T.H.b, Yang M.S.a	High-level production of recombinant trypsin in transgenic rice cell culture through utilization of an alternative carbon source and recycling system	Enzyme Microb. Technol.	63	21-27	2014		
40781	0	Il Kwon S.a b, Hwang D.J.a	Plant-specific VQ-domain proteins as interaction partners of WRKY transcription factors	Plant Genetic Resources: Characterisation and Utilisation	12	S121-S124	2014		
40782	0	Khan A.L.a, Waqas M.b, Hussain J.a, Al-Harrasi A.a, Al-Rawahi A.a, Al-Hosni K.a, Kim M.J.b, Adnan M.c, Lee I.J.b	Endophytes Aspergillus caespitosus LK12 and Phoma sp. LK13 of Moringa peregrina produce gibberellins and improve rice plant growth	J Plant Interact	9	731-737	2014		
40783	0	Kim Y.H.a, Khan A.L.b, Waqas M.a, Shim J.K.a, Kim D.H.a, Lee K.Y.a, Lee I.J.c	Silicon Application to Rice Root Zone Influenced the Phytohormonal and Antioxidant Responses Under Salinity Stress	J. Plant Growth Regul.	33	137-149	2014		
40784	0	Yeo S.M.a, Yun Y.T.b, Kim D.M.a, Chung C.T.b, Ahn S.N.a	Validation of QTLs associated with spikelets per panicle and grain weight in rice	Plant Genetic Resources: Characterisation and Utilisation	12	S151-S154	2014		
40785	0	Islam M.K.a, Islam M.S.b, Biswas J.K.c, Lee S.Y.a, Alam I.d e, Huh M.R.a e	Screening of rice varieties for direct seeding method	Aust J Crop Sci	8	536-542	2014		
40786	0	Qin Y.a, Kim S.M.a, Zhao X.a, Lee H.S.a, Jia B.b, Kim K.M.c, Eun M.Y.a, Sohn J.K.a	QTL detection and MAS selection efficiency for lipid content in brown rice (Oryza sativa L.)	Genes and Genomics	32	506-512	2014		
40787	0	Gutierrez J.a, Atulba S.L.a, Kim G.a, Kim P.J.a b	Importance of rice root oxidation potential as a regulator of CH4 production under waterlogged conditions	Biol. Fertil. Soils	50	861-868	2014		
40788	0	Kim M.J.a, Jung Y.J.a, Lee S.H.a, Lee H.b, Kim J.C.a	Kinetic analysis and enzyme concentration effect relevant to dependence of amylolysis of starch granules on specific surface area concentration	Food Sci. Biotechnol.	23	475-481	2014		
40789	0	Park H.M.a, Jeon E.J.a, Waminal N.E.a, Shin K.S.b, Kweon S.J.b, Park B.S.b, Suh S.C.b, Kim H.H.a	Detection of transgenes in three genetically modified rice lines by fluorescence in situ hybridization	Genes and Genomics	32	527-531	2014		
40790	0	Cho J.I.a, Lim H.M.a, Siddiqui Z.S.b, Park S.H.a, Kim A.R.a, Kwon T.R.a, Lee S.K.a, Park S.C.a, Jeong M.J.a, Lee G.S.a	Over-expression of PsGPD, a mushroom glyceraldehyde-3-phosphate dehydrogenase gene, enhances salt tolerance in rice plants	Biotechnol. Lett.	36	1641-1648	2014		
40791	0	Yamamoto N.a d, Kubota T.a, Masumura T.b c, Shiraishi N.a e, Tanaka K.b c, Sugimoto T.a, Oji Y.a	Molecular cloning, gene expression and functional expression of a phosphoenolpyruvate carboxylase Osppc1 in developing rice seeds: Implication of involvement in nitrogen accumulation	Seed Sci. Res.	24	23-36	2014	_,_,_,_,_,_	Osppc, OSPPC, Osppc2a, ppc2a,PEPC-1, Osppc1, ppc1,PEPC-2, Osppc4, ppc4,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,Osppc2b, ppc2b,Osppc3, Osppc2, ppc3,ppc2
40792	0	Ishikawa T.a, Kusa K.b, Suzuki Y.c	A computer program written in logo to illustrate the tillering structure of rice (Oryza sativa L.)	Japanese Journal of Crop Science	83	260-266	2014		
40793	0	Mostofa M.G.a b, Yoshida N.a, Fujita M.a	Spermidine pretreatment enhances heat tolerance in rice seedlings through modulating antioxidative and glyoxalase systems	Plant Growth Regul.	73	31-44	2014		
40794	0	Zhang L.a, Nakanishi Itai R.a, Yamakawa T.a, Nakanishi H.a, Nishizawa N.K.b, Kobayashi T.b c	The Bowman-Birk Trypsin Inhibitor IBP1 Interacts with and Prevents Degradation of IDEF1 in Rice	Plant Molecular Biology Reporter	32	841-851	2014		
40795	0	Kameoka E.	IRRI Young rice scientist conference in 2013	Japanese Journal of Crop Science	83	380-381	2014		
40796	0	Arazoe T.a, Kuwata S.a, Arie T.b, Ohsato S.a	Experimental evidence of a pathogenic change caused by homologous recombination between endogenous and introduced dysfunctional Avr-Pita genes in Pyricularia oryzae	Journal of General Plant Pathology	80	153-157	2014		
40797	0	Watanabe H.a, Saigusa M.b, Adachi Y.a, Sibuya K.c	Effects of the Inabenfide [4'-chloro-2'-(alpha-hydroxybenzyl)-isonicotinanilide] on the growth of rice grown in no tillage cultivation with single basal fertilization to the nursery box	Asian Journal of Crop Science	6	354-361	2014		
40798	0	Ishikawa-Sakurai J., Hayashi H., Murai-Hatano M.	Nitrogen availability affects hydraulic conductivity of rice roots, possibly through changes in aquaporin gene expression	Plant Soil	379	289-300	2014		
40799	0	Nunkaew T.a, Kantachote D.a b, Kanzaki H.c, Nitoda T.c, Ritchie R.J.d	Effects of 5-aminolevulinic acid (ALA)-containing supernatants from selected Rhodopseudomonas palustris strains on rice growth under NaCl stress, with mediating effects on chlorophyll, photosynthetic electron transport and antioxidative enzymes	Electronic Journal of Biotechnology	17		2014		
40800	0	Shingu Y.a, Kanno Y.b, Tokai T.b, Shibata T.a, Wakasa K.b c	A visible assay for meiotic homologous recombination in pollens of rice	Plant Biotechnology	31	55-59	2014		
40801	0	Otake R., Sasanuma T., Abe T.	Effect of endogenous hydrolytic enzymes on glucose liberation and ecotypical difference in hot-water-treated rice grains (Oryza sativa L.)	Food Sci. Technol. Res.	20	161-165	2014		
40802	0	Nozoye T.a, Nagasaka S.a c, Bashir K.a d, Takahashi M.a e, Kobayashi T.b, Nakanishi H.a, Nishizawa N.K.a b	Nicotianamine synthase 2 localizes to the vesicles of iron-deficient rice roots, and its mutation in the YXXphi or LL motif causes the disruption of vesicle formation or movement in rice	Plant Journal	77	246-260	2014	NAS2	OsNAS2
40803	0	Hamaoka N.a, Ueno O.b	The effect of nitrogen application level on photosynthetic traits in the AA genome wild rice species, Oryza nivara: A comparison with the Oryza sativa japonica cultivar, Nipponbare	Japanese Journal of Crop Science	83	333-340	2014		
40804	0	Hirano T.a, Bekhasut P.b, Sommut W.b, Zungsontiporn S.c, Kondo A.a, Saka H.a, Michiyama H.a	Differences in elongation growth between floating and deepwater rice plants grown under severe flooding in Thailand	Field Crops Res.	160	73-76	2014		
40805	0	Thu T.T.P.a, Yamakawa T.b, Moe K.c	Effect of nitrogen application timing on growth, grain yield and eating quality of the KD18 and TH3-3 rice varieties	Journal of the Faculty of Agriculture, Kyushu University	59	55-64	2014		
40806	0	Ohmori Y.a b, Yasui Y.a, Hirano H.Y.a	Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice LEAF development	Genes and Genetic Systems	89	87-91	2014	PNH1,_,DL	OsPNH1,FCP1, FCP1/Os CLE402, Os CLE402, OsCLE402,DL, dl(lop), lop, dl, dl1
40807	0	Okami M.a d, Kato Y.a, Kobayashi N.b c e, Yamagishi J.a	Agronomic performance of an IR64 introgression line with large leaves derived from New Plant Type rice in aerobic culture	European Journal of Agronomy	58	11-17	2014		
40808	0	Chiba M.a, Terao T.b	Open-top chambers with solar-heated air introduction tunnels for the high-temperature treatment of Paddy fields	Plant Prod. Sci.	17	152-165	2014		
40809	0	Obara M.a, Ishimaru T.a b, Abiko T.a, Fujita D.b d, Kobayashi N.c, Yanagihara S.a, Fukuta Y.a e	Identification and characterization of quantitative trait loci for root elongation by using introgression lines with genetic background of Indica-type rice variety IR64	Plant Biotechnol Rep	8	267-277	2014		
40810	0	Inthavong T.a, Fukai S.b, Tsubo M.c	Estimation of separate effects of water and nutrient limitation for rainfed lowland rice within a province in the Mekong region	Field Crops Res.	163	100-108	2014		
40811	0	Leaungthitikanchana S.a, Tanaka M.a, Lordkaew S.b, Jamjod S.c, Rerkasem B.c, Fujiwara T.a	Comparison of BOR1-like gene expression in two genotypes with different boron efficiencies in commercial crop plants in Thailand	Soil Sci. Plant Nutr.	60	333-340	2014		
40812	0	Sato D.S.a, Ohmori Y.a b, Nagashima H.a, Toriba T.a c, Hirano H.Y.a	A role for TRIANGULAR HULL1 in fine-tuning spikelet morphogenesis in rice	Genes and Genetic Systems	89	61-69	2014	EG1,G1,BLS1	eg1, GY1,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
40813	0	Hoai T.T.T.a b, Suu T.D.b, Satoh H.a, Kumamaru T.a	Diversity of glutelin acidic subunit polypeptides in rice cultivars collected from Northern Vietnam	Plant Breeding	133	341-347	2014		
40814	24395252	Hirano H.Y., Tanaka W., Toriba T.	Grass flower development	Methods in Molecular Biology	1110	57-84	2014		
40815	0	Yamamoto N.a d, Shimada M.a, Sugimoto T.a, Oji Y.a, Masumura T.b c	Dynamic protein expressions of phosphoenolpyruvate carboxylase in developing rice seeds	J. Cereal Sci.	60	457-460	2014		
40816	0	Ishimaru K., Ujiie K.	Identification of genes for rice grain size.and their function	Japanese Journal of Crop Science	83	299-304	2014		
40817	0	Kato Y.a, Katsura K.b	Rice adaptation to aerobic soils: Physiological considerations and implications for agronomy	Plant Prod. Sci.	17	1-12	2014		
40818	0	Okubo K.	Morphological evaluation of the trace of grain detachment in Japonica rice cultivars with different shattering habits	Plant Prod. Sci.	17	291-297	2014		
40819	0	Matsushita K.a b, Ishii T.a, Ideta O.a, Iida S.a, Sunohara Y.a, Maeda H.a, Watanabe H.b	Yield and lodging resistance of 'Tachiayaka', a novel rice cultivar with short panicles for whole-crop silage	Plant Prod. Sci.	17	202-206	2014		
40820	0	Matsuda H.a, Chuba M.a, Mori S.b, Fujii H.b	Effect of the change of weather conditions after 1980 in yamagata prefecture on the rice growth at maximum tiller number stage	Japanese Journal of Crop Science	83	242-248	2014		
40821	0	Horai K., Ishii A., Shimono H.	Genotypic variation in the response to high water temperature during vegetative growth and the effects on rice productivity under a cool climate	Field Crops Res.	162	12-19	2014		
40822	0	Maisuraa, Achmad Chozin M.b, Lubis I.b, Junaedi A.b, Ehara H.c	Some physiological character responses of rice under drought conditions in a paddy system	Journal of the International Society for Southeast Asian Agricultural Sciences	20	104-114	2014		
40823	0	Osugi A., Izawa T.	Critical Gates in Day-Length Recognition to Control the Photoperiodic Flowering	Adv. Bot. Res.	72	103-130	2014		
40824	0	Fukuoka S.a, Yamamoto S.I.a, Mizobuchi R.a, Yamanouchi U.a, Ono K.a, Kitazawa N.a, Yasuda N.b, Fujita Y.b c, Thi Thanh Nguyen T.b d, Koizumi S.b e, Sugimoto K.a, Matsumoto T.a f, Yano M.a	Multiple functional polymorphisms in a single disease resistance gene in rice enhance durable resistance to blast	Sci Rep	4		2014		
40825	0	Ota Y.a, Ishiguro S.a, Aoyama E.a, Aiba R.a, Iwashiro R.a, Tanabata T.b c, Takamure I.a, Fujino K.a, Kishima Y.a	Isolation of a major genetic interaction associated with an extreme phenotype using assorted F2 populations in rice	Molecular Breeding	33	997-1003	2014		
40826	0	Tanaka W., Toriba T., Hirano H.Y.	Flower Development in Rice	Adv. Bot. Res.	72	221-262	2014		
40827	0	Angeles-Shim R.B.a b, Vinarao R.B.a, Marathi B.a, Jena K.K.a	Molecular analysis of oryza latifolia Desv. (CCDD genome)-derived introgression lines and identification of value-added traits for rice (O. sativa L.) improvement	Journal of Heredity	105	676-689	2014		
40828	23895552	Chen Y.a, Zhai S.a, Zhang H.a, Zuo R.a, Wang J.a, Guo M.a c, Zheng X.a, Wang P.b, Zhang Z.a	Shared and distinct functions of two Gti1/Pac2 family proteins in growth, morphogenesis and pathogenicity of Magnaporthe oryzae	Environ. Microbiol.	16	788-801	2014		
40829	0	Sarangi S.K.a, Maji B.a, Singh S.b, Sharma D.K.c, Burman D.a, Mandal S.a, Ismail A.M.d, Haefele S.M.e	Crop establishment and nutrient management for dry season (boro) rice in coastal areas	Agron J	106	2013-2023	2014		
40830	0	Deng Y.a, Jin Y.a, Luo Y.a, Zhong Y.a, Yue J.a, Song X.b, Zhao Y.a c	Impact of continuous or cycle high hydrostatic pressure on the ultrastructure and digestibility of rice starch granules	J. Cereal Sci.	60	302-310	2014		
40831	0	Truong T.H., Yuet W.C., Hall M.D.	Glycemic index of American-grown jasmine rice classified as high	Int J Food Sci Nutr	65	436-439	2014		
40832	0	Rowell C.a, Kuiper N.a, Al-Saad K.b, Nriagu J.c, Shomar B.a	A market basket survey of As, Zn and Se in rice imports in Qatar: Health implications	Food and Chemical Toxicology	70	33-39	2014		
40833	0	Li J.a, Sun Y.b, Liu H.c d, Wang Y.b, Jia Y.e, Xu M.b	Genetic variation and evolution of the Pit blast resistance locus in rice	Genet. Resour. Crop Evol.	61	473-489	2014	PIT	Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59
40834	24739238	Yadav D.K.a, Shukla D.b, Tuteja N.a	Isolation, in silico characterization, localization and expression analysis of abiotic stressresponsive rice G-protein beta subunit (RGB1)	Plant Signaling and Behavior	9		2014		
40835	0	Elsharkawy M.M.a, Hassan N.b c, Ali M.b, Mondal S.N.d, Hyakumachi M.e	Effect of zoysiagrass rhizosphere fungal isolates on disease suppression and growth promotion of rice seedlings	Acta Agriculturae Scandinavica Section B: Soil and Plant Science	64	135-140	2014		
40836	0	Yi Z.a, Wang X.a, Hu Y.a, Yu Z.b	Worldwide patent map analysis of mechanization technologies relating to field crop production i: A case study on rice	International Agricultural Engineering Journal	23	15-24	2014		
40837	0	Kakar K.U.a, Duan Y.P.b, Nawaz Z.c, Sun G.d, Almoneafy A.A.a, Hassan M.A.e, Elshakh A.a, Li B.a, Xie G.L.a	A novel rhizobacterium Bk7 for biological control of brown sheath rot of rice caused by Pseudomonas fuscovaginae and its mode of action	European Journal of Plant Pathology	138	819-834	2014		
40838	0	Urriola J.a, Rathore K.S.a b	Temporal and spatial activities of a rice glutelin promoter in transgenic sorghum	Plant Cell Tissue Organ Cult.	116	227-234	2014		
40839	0	Nitcher R.a, Pearce S.a, Tranquilli G.a b, Zhang X.a, Dubcovsky J.a c	Effect of the hope FT-B1 allele on wheat heading time and yield components	Journal of Heredity	105	666-675	2014		
40840	0	Pei W.a, Lan Y.B.b, Luo X.W.a, Zhou Z.Y.a, Wang Z.b, Wang Y.c	Integrated sensor system for monitoring rice growth conditions based on unmanned ground vehicle system	International Journal of Agricultural and Biological Engineering	7	75-81	2014		
40841	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White III L.M., Linscombe S.D.	Registration of 'CL261' Rice	Journal of Plant Registrations	8	131-134	2014		
40842	0	Folsom J.J.a, Begcy K.a, Hao X.b, Wang D.b, Walia H.a	Rice fertilization-independent Endosperm1 regulates seed size under heat stress by controlling early endosperm development	Plant Physiol.	165	238-248	2014		
40843	0	Lanka S.K., Stout M.J., Ottea J.A.	Evaluation of neonicotinoids as pyrethroid alternatives for rice water weevil management in water-seeded rice	Crop Protection	56	37-43	2014		
40844	0	Broadhurst C.L.a b, Chaney R.L.a, Davis A.P.b, Cox A.c, Kumar K.c, Reeves R.D.d, Green C.E.a	Growth and Cadmium Phytoextraction by Swiss Chard, Maize, Rice, Noccaea caerulescens, and Alyssum murale in Ph Adjusted Biosolids Amended Soils	Int J Phytoremediation	17	25-39	2015		
40845	0	Min B.a, McClung A.b, Chen M.H.b	Effects of hydrothermal processes on antioxidants in brown, purple and red bran whole grain rice (Oryza sativa L.)	Food Chem	159	106-115	2014		
40846	0	Hussien A.a, Tavakol E.a, Horner D.S.b, Mu?oz-Amatria?n M.c, Muehlbauer G.J.c, Rossini L.a d	Genetics of tillering in rice and barley	Plant Genome	7		2014		
40847	24173818	Cui L.a b c, Feng X.b, Lin C.J.b d e, Wang X.a, Meng B.b, Wang X.b c, Wang H.b c	Accumulation and translocation of 198Hg in four crop species	Environmental Toxicology and Chemistry	33	334-340	2014		
40848	0	Joshi R.a c, Ramanarao M.V.a, Lee S.a, Kato N.b, Baisakh N.a	Ectopic expression of ADP ribosylation factor 1 (SaARF1) from smooth cordgrass (Spartina alterniflora Loisel) confers drought and salt tolerance in transgenic rice and Arabidopsis	Plant Cell Tissue Organ Cult.	117	17-30	2014		
40849	0	Farmaha B.S.	Evaluating Animo Model for Predicting Nitrogen Leaching in Rice and Wheat	Arid Land Research and Management	28	25-35	2014		
40850	0	Oard J.H., Harrell D.L., Groth D.E., Bearb K.F., White III L.M., Linscombe S.D.	Registration of 'Mermentau' Rice	Journal of Plant Registrations	8	135-138	2014		
40852	0	Badza S.a, Jevremovic T.b	Neutron activation analysis of Californian and Japanese rice	Journal of Radioanalytical and Nuclear Chemistry	299	427-431	2014		
40853	0	Lu Y.L.a, Burgos N.R.b, Wang W.X.a, Yu L.Q.a	Transgene Flow from Glufosinate-Resistant Rice to Improved and Weedy Rice in China	Rice Science	21	271-281	2014		
40855	0	Ma J.a, Jia M.H.b, Jia Y.b	Characterization of rice blast resistance gene Pi61(t) in rice germplasm	Plant Dis.	98	1200-1204	2014	PI61	Pi61(t)
40856	0	Klassen S.P.a, Villa J.a, Adamchuk V.b c, Serraj R.a d	Soil mapping for improved phenotyping of drought resistance in lowland rice fields	Field Crops Res.	167	112-118	2014		
40857	0	Ye Q.a b, Yang X.G.b, Liu Z.J.b, Dai S.W.c, Li Y.b d, Xie W.J.b, Chen F.e	The effects of climate change on the planting boundary and potential yield for different rice cropping systems in southern China	Journal of Integrative Agriculture	13	1546-1554	2014		
40858	0	Mubeen K.a, Nadeem M.A.b, Tanveer A.b, Jhala A.J.c	Effects of seeding time and weed control methods in direct seeded rice (Oryza Sativa L.)	Journal of Animal and Plant Sciences	24	534-542	2014		
40859	0	Rogers C.W.a, Brye K.R.a, Smartt A.D.a, Norman R.J.a, Gbur E.E.b, Evans-White M.A.c	Cultivar and previous crop effects on methane emissions from drill-seeded, delayed-flood rice production on a silt-loam soil	Soil Sci	179	28-36	2014		
40860	0	Liu D.a b, Zhang H.c, Xu B.a, Tan J.b	Development of kinetic model structures for glutinous rice saccharification by different enzymes	J Food Process Eng	37	317-328	2014		
40861	0	Lee Y.a, Mauromoustakos A.b, Wang Y.J.a	Effects of heat treatments on the milling, physicochemical, and cooking properties of two long-grain rice cultivars during storage	Cereal Chem	91	56-64	2014		
40862	0	Belefant-Miller H., Grunden E.	Carotenoid metabolism is induced in rice bran during very high temperature stress	J. Sci. Food Agric.	94	1808-1815	2014		
40863	0	Knoblauch R.a, Ernani P.R.b, Deschamps F.C.c, Gatiboni L.C.d, Walker T.W.e, Louren?o K.S.f, Martins A.A.g, Pegoraro A.f	Rice straw incorporated just before soil flooding increases acetic acid formation and decreases available nitrogen [A incorpora??o da palha do arroz pr?ximo ao alagamento do solo aumenta a forma??o de ?cido ac?tico e diminui a disponibilidade de nitrog?nio]	Rev. Bras. Cienc. Solo	38	177-184	2014		
40864	0	Wan G.a, Dang Z.a, Wu G.b, Parajulee M.N.c, Ge F.d, Chen F.a	Single and fused transgenic Bacillus thuringiensis rice alter the species-specific responses of non-target planthoppers to elevated carbon dioxide and temperature	Pest Manag. Sci.	70	734-742	2014		
40865	0	Shi T.a e, Huang H.b, Sanderson M.J.a, Tax F.E.c d	Evolutionary dynamics of leucine-rich repeat receptor-like kinases and related genes in plants: A phylogenomic approach	J Integr Plant Biol	56	648-662	2014		
40866	0	E Z.G.a, Zhang Y.P.a, Zhou J.H.c d, Wang L.a b	Roles of the bZIP gene family in rice	Genetics and Molecular Research	13	3025-3036	2014		
40867	24518308	Mahattanatawee K.a, Rouseff R.L.b	Comparison of aroma active and sulfur volatiles in three fragrant rice cultivars using GC-Olfactometry and GC-PFPD	Food Chem	154	1-6	2014		
40868	0	Dandapat A.a b, Bhattacharyya J.a, Gayen S.a, Chakraborty A.a, Banga A.a c, Mukherjee R.a, Mandal C.C.a d, Hossain M.A.a e, Roy S.a, Basu A.a, Sen S.K.a	Variant Cry1Ab entomocidal Bacillus thuringiensis toxin gene facilitates the recovery of an increased number of lepidopteran insect resistant independent rice transformants against yellow stem borer (Scirpophaga incertulus) inflicted damage	J. Plant Biochem. Biotechnol.	23	81-92	2014		
40869	0	Rubia L.a, Rangan L.a b, Choudhury R.R.b, Kam?nek M.c, Dobrev P.c, Malbeck J.c, Fowler M.a, Slater A.a, Scott N.a, Bennett J.d, Peng S.d, Khush G.S.e, Elliott M.a	Changes in the chlorophyll content and Cytokinin Levels in the Top Three Leaves of New Plant Type Rice During Grain Filling	J. Plant Growth Regul.	33	66-76	2014		
40870	0	Deepthi V.a, Raksha B.b, Pooja S.b, Subashkumar R.a, Vivekanandhan G.a, Siva R.b, Babu S.b	Differential response of cultivated rice to pathogen challenge and abiotic stresses with reference to cationic peroxidase	Archives of Phytopathology and Plant Protection	47	1390-1399	2014		
40871	0	Chandrasekhar K.a b, Vijayalakshmi M.c, Vani K.a c, Kaul T.a, Reddy M.K.a	Phloem-specific expression of the lectin gene from Allium sativum confers resistance to the sap-sucker Nilaparvata lugens	Biotechnol. Lett.	36	1059-1067	2014		
40872	0	Mahajan G.R.a, Pandey R.N.a, Kumar D.b, Datta S.C.a, Sahoo R.N.c, Parsad R.d	Development of Critical Values for the leaf color Chart, SPAD and Fieldscout CM 1000 for Fixed Time Adjustable Nitrogen Management in Aromatic Hybrid Rice (Oryza sativa L.)	Commun Soil Sci Plant Anal	45	1877-1893	2014		
40873	0	Chattopadhyay K.a, Nath D.a, Mohanta R.L.a, Bhattacharyya S.b, Marndi B.C.a, Nayak A.K.a, Singh D.P.a, Sarkar R.K.a, Singh O.N.a	Diversity and validation of microsatellite markers in Saltol QTL region in contrasting rice genotypes for salt tolerance at the early vegetative stage	Aust J Crop Sci	8	356-362	2014		
40874	0	Divya B.a b, Robin S.a d, Rabindran R.a e, Manjunath H.a f, Valarmathi P.a e, Joel A.J.a c	Resistance reaction of gene introgressed lines against rice blast (Pyricularia oryzae) disease	Australasian Plant Pathology	43	177-191	2014		
40875	0	Nayyar H.a, Kaur R.a, Kaur S.a, Singh R.b	gamma-Aminobutyric Acid (GABA) Imparts Partial Protection from Heat Stress Injury to Rice Seedlings by Improving Leaf Turgor and Upregulating Osmoprotectants and Antioxidants	J. Plant Growth Regul.	33	408-419	2014		
40876	0	Ganie S.A.a b, Karmakar J.a, Roychowdhury R.a, Mondal T.K.b, Dey N.a	Assessment of genetic diversity in salt-tolerant rice and its wild relatives for ten SSR loci and one allele mining primer of salT gene located on 1st chromosome	Plant Systematics and Evolution	300	1741-1747	2014		
40877	0	Vijayalakshmi D.a, Kishor Ashok S.b, Raveendran M.b	Screening for salinity stress tolerance in rice and finger millet genotypes using shoot Na+/K+ ratio and leaf carbohydrate contents as key physiological traits	Indian Journal of Plant Physiology	19	156-160	2014		
40878	0	Choudhary A.K.a, Suri V.K.b	Integrated Nutrient-Management Technology for Direct-Seeded Upland Rice (Oryza sativa) in Northwestern Himalayas	Commun Soil Sci Plant Anal	45	777-784	2014		
40879	0	Kumar A., Kanwal P., Gupta A.K., Singh B.R., Gaur V.S.	A Full-Length DOF1 Transcription Factor of Finger Millet and its Response to a Circadian Cycle	Plant Molecular Biology Reporter	32	419-427	2014		
40880	0	Shiriga K.a b, Sharma R.a, Kumar K.b, Yadav S.K.c, Hossain F.a, Thirunavukkarasu N.a	Genome-wide identification and expression pattern of drought-responsive members of the NAC family in maize	Meta Gene	2	407-417	2014		
40881	0	Kumar S.a, Dwivedi S.K.a, Singh S.S.a, Bhatt B.P.a, Mehta P.a, Elanchezhian R.b, Singh V.P.c, Singh O.N.d	Morpho-physiological traits associated with reproductive stage drought tolerance of rice (Oryza sativa L.) genotypes under rain-fed condition of eastern Indo-Gangetic Plain	Indian Journal of Plant Physiology	19	87-93	2014		
40882	0	Bornare S.S., Mittra S.K., Mehta A.K.	Genetic variability, correlation and path analysis of floral, yield and its component traits in CMS and restorer lines of rice (Oryza sativa L.)	Bangladesh Journal of Botany	43	45-52	2014		
40883	0	Panda D.a b, Sarkar R.K.a	Mechanism associated with nonstructural carbohydrate accumulation in submergence tolerant rice (Oryza sativa L.) cultivars	J Plant Interact	9	62-68	2014		
40884	0	Dubey A.K.a b, Godbole A.c, Srinivasan S.d, Mathew M.K.a	VDAC properties are influenced by the source of its purification	International Journal of Pharmacy and Pharmaceutical Sciences	6	126-130	2014		
40885	0	Ramanjaneyulu A.V.a, Gouri Shankar V.a, Neelima T.L.b, Shashibhusahn D.a	Genetic analysis of rice (Oryza sativa L.) genotypes under aerobic conditions on alfisols	Sabrao Journal of Breeding and Genetics	46	99-111	2014		
40886	0	Khan M.R., Haque Z., Kausar N.	Management of the root-knot nematode Meloidogyne graminicola infesting rice in the nursery and crop field by integrating seed primingand soil application treatments of pesticides	Crop Protection	63	15-25	2014		
40887	0	Pandey S.a b, Singh B.a, Kumar J.a	DNA typing and virulence determination of Xanthomonas oryzae pv. oryzae population for the management of bacterial leaf blight of rice in Udham Singh Nagar, India	European Journal of Plant Pathology	138	847-862	2014		
40888	0	Ali M.N.a, Ghosh B.a, Gantait S.b c, Chakraborty S.a	Selection of Rice Genotypes for Salinity Tolerance Through Morpho-Biochemical Assessment	Rice Science	21	288-298	2014		
40889	0	Zameer Hussain S.a, Singh B.b	Functional properties of re-fabricated rice as affected by die during extrusion process	International Journal of Food Engineering	10	417-426	2014		
40890	0	Malathi S., Madhavan S., Rabindran R., Paranidharan V., Velazhahan R.	Differential induction of peroxidase and polyphenol oxidase isozymes in suspension-cultured cells of blast resistant and susceptible genotypes of rice in response to treatment with Magnaporthe grisea elicitor and toxin	Archives of Phytopathology and Plant Protection	47	2524-2532	2014		
40891	0	Singh R.a, Narzary D.a c, Bhardwaj J.a, Singh A.K.a, Kumar S.a, Kumar A.b	Molecular diversity and SSR transferability studies in Vetiver grass (Vetiveria zizanioides L. Nash)	Ind Crops Prod	53	187-198	2014		
40892	0	Shree M.L.S.a, Vasantha K.M.a, Rani J.A.S.a, Devendra R.a, Prasad T.G.a, Shrivastava M.b, Sashidhar V.R.a	Salt tolerant and salt susceptible rice (Oriza sativa) varieties differ significantly in 22Na uptake but only up to the first 1 h after salt imposition	Indian Journal of Plant Physiology	19	14-20	2014		
40893	0	Randhawa G.J., Singh M., Sood P., Bhoge R.K.	Multitarget real-time PCR-based system: Monitoring for unauthorized genetically modified events in India	J. Agric. Food Chem.	62	7118-7130	2014		
40894	0	Saikumar S.a b c, Kalmeshwer Gouda P.d, Saiharini A.a, Varma C.M.K.e, Vineesha O.f, Padmavathi G.c, Shenoy V.a	Major QTL for enhancing rice grain yield under lowland reproductive drought stress identified using an O. sativa/O. glaberrima introgression line	Field Crops Res.	163	119-131	2014		
40895	0	Mondal K.K.a, Meena B.R.a, Junaid A.a, Verma G.a, Mani C.a, Majumder D.b, Khicher M.a, Kumar S.a, Banik S.c	Pathotyping and genetic screening of type III effectors in Indian strains of Xanthomonas oryzae pv. oryzae causing bacterial leaf blight of rice	Physiol. Mol. Plant Pathol.	86	98-106	2014		
40896	24791420	Sujith Kumar M.S.a, Dahuja A.a, Rai R.D.a, Walia S.b, Tyagi A.a	Role of gamma-oryzanol in drought-tolerant and susceptible cultivars of rice (Oryza sativa L.)	Indian Journal of Biochemistry and Biophysics	51	75-80	2014		
40897	0	Jha V.B.b, Sharma A.K.a, Singh B.a	Genetic divergence in early rice genotypes	Ann Biol	30	68-70	2014		
40898	0	Sellammal R.a, Robin S.a, Raveendran M.b	Association and heritability studies for drought resistance under varied moisture stress regimes in backcross inbred population of rice	Rice Science	21	150-161	2014		
40899	0	Chatterjee M.b, Jagan Mohan Reddy P.a	Identification of salt tolerance genotypes using ssr markers in rice	Research Journal of Pharmaceutical, Biological and Chemical Sciences	5	1312-1317	2014		
40900	0	Semwal D.P., Pandey A., Bhandari D.C., Dhariwal O.P., Sharma S.K.	Variability study in seed morphology and uses of indigenous rice landraces (Oryza sativa L.) collected from West Bengal, India	Aust J Crop Sci	8	460-467	2014		
40901	0	Kulkarn S.S., Chavan P.D.	Study of effect of waterlogging on root anatomy of ragi and rice	American Journal of Plant Physiology	9	46-51	2014		
40902	0	Nagendran K.a, Karthikeyan G.a, Mohammed Faisal P.a, Kalaiselvi P.a, Raveendran M.b, Prabakar K.a, Raguchander T.a	Exploiting endophytic bacteria for the management of sheath blight disease in rice	Biological Agriculture and Horticulture	30	8-23	2014		
40903	0	Sunil C.M.a, Shankaralingappa B.C.a, Shruthi M.K.a, Hittalmani S.b, Harinikumar K.M.c	Influence of integrated package of agrotechniques on quality parameters of aerobic rice	Journal of Agronomy	13	58-64	2014		
40904	0	Gauthami P.a, Subrahmanyam D.b, Padma V.a, Kiran T.V.b, Rao Y.V.b, Rao P.R.b, Voleti S.R.b	Variation in leaf photosynthetic response of rice genotypes to post-anthesis water deficit	Indian Journal of Plant Physiology	19	127-137	2014		
40905	0	Suresh A., Ramesh M., Reddy S.R.	Fluorescent pseudomonads contribute to the enhanced growth and yield of rice cultivated under system of rice intensification (SRI)	Indian Journal of Agricultural Research	48	287-293	2014		
40906	0	Mahajan G.R.a, Pandey R.N.b, Datta S.C.b, Kumar D.c, Sahoo R.N.d, Parsad R.e	Fertilizer nitrogen, phosphorus and sulphur prescription for aromatic hybrid rice (Oryza sativa L.) using targeted yield approach	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	84	537-547	2014		
40907	0	Manikandan R., Sathish S., Balakrishnan N., Balasubramani V., Sudhakar D., Udayasuriyan V.	Agrobacterium mediated transformation of indica rice with synthetic cry2AX1 gene for resistance against rice leaf folder	Journal of Pure and Applied Microbiology	8	3135-3142	2014		
40908	0	Verma S.K.a, Saxena R.R.a, Saxena R.R.b, Xalxo M.S.a, Verulkar S.B.c	QTL for grain yield under water stress and non-stress conditions over years in rice (Oryza sativa L.)	Aust J Crop Sci	8	916-926	2014		
40909	0	Gayen D.a, Ali N.a, Ganguly M.a, Paul S.a, Datta K.a, Datta S.K.a b	RNAi mediated silencing of lipoxygenase gene to maintain rice grain quality and viability during storage	Plant Cell Tissue Organ Cult.	118	229-243	2014		
40910	0	Mahmod I.F.a, Barakbah S.S.a, Osman N.a, Omar O.b	Physiological response of local rice varieties to aerobic condition	Int J Agric Biol	16	738-744	2014		
40911	0	Ninsuwan U.a, Pornsirikarn P.b, Jundee N.b, Puima N.b	Identification of salt tolerance in Thai indigenous rice on the basis of the Na/K ratio and salt stress responses	Asian Journal of Plant Sciences	12	247-251	2014		
40912	0	Fatah T.a f, Rafii M.Y.a b, Rahim H.A.c, Meon S.d, Azhar M.c, Latif M.A.a e	Cloning and analysis of QTL linked to blast disease resistance in malaysian rice variety pongsu seribu 2	Int J Agric Biol	16	395-400	2014		
40913	0	Rubel M.H.a, Hassan L.a, Islam M.M.b, Robin A.H.K.a, Alam J.a	Evaluation of rice genotypes under salt stress at the seedling and reproductive stages using phenotypic and molecular markers	Pak J Bot	46	423-432	2014		
40914	0	Sayari M., Babaeizad V., Ghanbari M.A.T., Rahimian H.	Expression of the pathogenesis related proteins, NH-1, PAL, and lipoxygenase in the iranian tarom and khazar rice cultivars, in reaction to rhizoctonia solani -the causal agent of rice sheath blight	Journal of Plant Protection Research	54	36-43	2014		
40915	0	Nascimento J.B.a, Barrigossi J.A.F.b, Borba T.C.D.O.b, Martins J.F.D.S.c, Fernandes P.M.a, Mello R.N.D.b	Evaluation of rice genotypes for sugarcane borer resistance using phenotypic methods and molecular markers	Crop Protection	67	43-51	2015		
40916	24444958	Huang Y.C., Lai H.M.	Characteristics of the starch fine structure and pasting properties of waxy rice during storage	Food Chem	152	432-439	2014		
40917	0	Aumonde T.Z.a, Pedo T.b, Martinazzo E.G.c, Borella J.d, do Amarante L.e, Villela F.A.a, de Moraes D.M.e	Action of Zantedeschia Aethiopica extracts in seed physiological quality, photosynthetic pigments and antioxidative metabolism of red rice seedlings [Acao de extratos de Zantedeschia aethiopica na qualidade fisiologica de sementes, pigmentos fotossinteticos e metabolismo antioxidativo de plantulas de arroz vermelho]	Bioscience Journal	30	1412-1420	2014		
40918	0	Mitchell J.H.a, Sipaseuthb, Fukai S.a	Farmer participatory variety selection conducted in high- and low-toposequence multi-location trials for improving rainfed lowland rice in Lao PDR	Crop and Pasture Science	65	655-666	2014		
40919	0	Stein R.J.a b, Lopes S.I.G.c, Fett J.P.a d	Iron toxicity in field-cultivated rice: Contrasting tolerance mechanisms in distinct cultivars	Theoretical and Experimental Plant Physiology	26	135-146	2014		
40920	0	Jedrum S.a, Thanachit S.a, Anusontpornperm S.a, Wiriyakitnateekul W.b	Soil amendments effect on yield and quality of jasmine rice grown on Typic Natraqualfs, Northeast Thailand	International Journal of Soil Science	9	37-54	2014		
40921	0	Horuz A., Korkmaz A.	The effect of silicon fertilization on reducing salt stress in rice (Oryza sativa L.) [Celtikte (Oryza sativa L.) tuz stresinin azalti{dotless}lmasi{dotless}nda silisyumlu gubrelemenin etkisi]	Tarim Bilimleri Dergisi	20	215-229	2014		
40922	24846922	Chen Z.a, Yan W.b, Wang N.a, Zhang W.a, Xie G.a, Lu J.a, Jian Z.a, Liu D.a, Tang X.c	[Cloning of a rice male sterility gene by a modified MutMap method].	Yi Chuan	36	85-93	2014		
40923	0	Pereira M.P., Santos C., Gomes A., Vasconcelos M.W.	Cultivar variability of iron uptake mechanisms in rice (Oryza sativa L.)	Plant Physiology and Biochemistry	85	21-30	2014		
40924	0	Kaya H.B.a, Demirci M.b, Tanyolac B.a	Genetic structure and diversity analysis revealed by AFLP on different Echinochloa spp. from northwest Turkey	Plant Systematics and Evolution	300	1337-1347	2014		
40925	0	Jaksomsak P.a, Sangruan P.b, Thomson G.c, Rerkasem B.b, Dell B.c, Prom-U-Thai C.a d	Uneven distribution of zinc in the dorsal and ventral sections of rice grain	Cereal Chem	91	124-129	2014		
40926	0	Chen C.C.a, Huang M.Y.b, Lin K.H.c, Wong S.L.d, Huang W.D.a, Yang C.M.b	Effects of light quality on the growth, development and metabolism of rice seedlings (Oryza sativa L.)	Research Journal of Biotechnology	9	15-24	2014		
40927	0	Hasan M.J.a, Kulsum U.a, Rahman M.H.a, Akter A.a, Shamsuddin A.K.M.b	Comparative study of floral characteristics in the component lines of hybrid rice (oryza sativa L.)	Bangladesh Journal of Botany	43	1-8	2014		
40928	0	Milbredt D., Patallo E.P., Van Pee K.H.	A tryptophan 6-halogenase and an amidotransferase are involved in thienodolin biosynthesis	Chembiochem	15	1011-1020	2014		
40929	0	Cheng A.a b, Ismail I.b, Osman M.c, Hashim H.d	Mapping of quantitative trait loci for aroma, amylose content and cooked grain elongation traits in rice	Plant OMICS	7	152-157	2014		
40930	0	Palanog A.D.a b c, Swamy B.P.M.b, Shamsudin N.A.A.b d, Dixit S.b, Hernandez J.E.a, Boromeo T.H.a, Cruz P.C.S.a, Kumar A.b	grain yield QTLs with consistent-effect under reproductive-stage drought stress in rice	Field Crops Res.	161	46-54	2014		
40931	0	Hidayat C.a b, Prastowo I.b c, Hastuti P.a, Restiani R.b	Effect of ethanol concentrations on rice bran protease activity and ester synthesis during enzymatic synthesis of Oleic Acid Ethyl Ester in a fed-batch system using crude rice bran (Oryza sativa) lipase	Biocatal. Biotransformation	32	231-235	2014		
40932	0	Iqbal S.Z.a b, Mustafa H.G.a, Asi M.R.c, Jinap S.b d	Variation in vitamin E level and aflatoxins contamination in different rice varieties	J. Cereal Sci.	60	352-355	2014		
40933	0	Aslam K., Arif M.	SSR analysis of chromosomes 3 and 7 of rice (Oryza Staiva L.) associated with grain length	Pak J Bot	46	1363-1373	2014		
40934	0	Ashraf M.A., Biswas S., Razzaque S., Haque T., Seraj Z.I.	Cloning and characterization of Alcohol Dehydrogenase (Adh) promoter region for expression under submergence and salinity stress	Plant Tissue Culture and Biotechnology	24	111-120	2014		
40935	0	Seesang J., Sripichitt P., Sreewongchai T.	Heterosis and inheritance of fertility-restorer genes in rice	ScienceAsia	40	48-52	2014		
40936	0	Alberto Bucher C.a, Azevedo Santos L.a, de Matos Nogueira E.b, Passos Rangel R.a, Regina de Souza S.c, Silvestre Fernandes M.a	The transcription of nitrate transporters in upland rice varieties with contrasting nitrate-uptake kinetics	Journal of Plant Nutrition and Soil Science	177	395-403	2014		
40937	0	Sultan M.S.a, Abdel-Moneam M.A.a, El-Abd A.B.b, El-Naem S.A.b	Inheritance of some root and grain quality traits in rice under water deficiency conditions	Journal of Agronomy	13	89-99	2014		
40938	0	Nadarajah K.a, Omar N.S.a, Thing T.Y.b	Molecular characterization of a WRKY gene from Oryza sativa indica cultivar UKMRC9	Plant OMICS	7	63-71	2014		
40939	0	Fotokian M.H., Agahi K.	Biplot Analysis of Genotype by Environment for Cooking Quality in Hybrid Rice: A Tool for Line ~ Tester Data	Rice Science	21	282-287	2014		
40940	0	Ashraf M.Y.a, Iqbal N.b, Ashraf M.b, Akhter J.a	MODULATION OF PHYSIOLOGICAL AND BIOCHEMICAL METABOLITES IN SALT STRESSED RICE BY FOLIAR APPLICATION OF ZINC	J Plant Nutr	37	447-457	2014		
40941	0	Hossain M.M.a, Sultana F.b, Asadur Rahman A.H.M.a	A comparative screening of hybrid, modern varieties and local rice cultivar for brown leaf spot disease susceptibility and yield performance	Archives of Phytopathology and Plant Protection	47	795-802	2014		
40942	0	Din A.R.J.M.a, Hanapi S.Z.b, Supari N.b, Alam S.A.Z.b, Javed M.A.c, Tin L.C.d, Sarmidi M.R.b	Germination, seedling growth, amylase and protease activities in Malaysian upland rice seed under microbial inoculation condition	Journal of Pure and Applied Microbiology	8	2627-2635	2014		
40943	0	Campos N.a, Torne J.M.h, Bleda M.J.b, Manich A.c, Urreta I.e, Montalban I.A.f, Castanon S.d, Moncalean P.g, Santos M.i	Proteomic and transcriptomic analysis of rice tranglutaminase and chloroplast-related proteins	Plant Science	229	142-153	2014		
40944	24846967	Liu Q., Xue Q., Xu J.	[Phylogenetic analysis of DNA demethylase genes in angiosperm].	Yi Chuan	36	276-285	2014		
40945	0	de Oliveira L.F.V.a b, Christoff A.P.a b, de Lima J.C.a b, de Ross B.C.F.b, Sachetto-Martins G.c, Margis-Pinheiro M.a, Margis R.a b d	The Wall-associated Kinase gene family in rice genomes	Plant Science	229	181-192	2014		
40946	0	Raimondi J.V.a, Marschalek R.b, Nodari R.O.c	Genetic base of paddy rice cultivars of southern brazil [Base genetica das cultivares de arroz irrigado do sul do brasil]	Crop Breeding and Applied Biotechnology	14	194-199	2014		
40947	24206686	Fraiture M.A.a b c d, Herman P.b, Taverniers I.c, De Loose M.c, Deforce D.d, Roosens N.H.a	An innovative and integrated approach based on DNA walking to identify unauthorised GMOs	Food Chem	147	60-69	2014		
40948	0	Barozai M.Y.K., Din M.	The relationship between codon usage bias and cold resistant genes	Pak J Bot	46	823-826	2014		
40949	0	Soares V.N.a, Radke A.K.a, Tillmann M.A.A.a, Moura A.B.b, Schuch L.O.B.a	Physiological performance of rice seeds treated with thiamethoxam or rhizobacteria under different temperatures [Desempenho fisiologico de sementes de arroz tratadas com rizobacterias e tiametoxam submetidas a diferentes temperaturas]	Journal of Seed Science	36	186-193	2014		
40950	0	Hou Y.L.a, Hong C.Y.b, Chen K.Y.a	Functional characterization of the stunt lemma palea 1 mutant allele in rice	Plant Growth Regul.	73	257-265	2014		
40951	0	Hathout T.A.a, El-Khallal S.M.a, Abdelgawad Z.A.a, Said E.M.b, Al Mokadem A.Z.a	Enhancing rice salt stress tolerance by priming with Validamycin A	International Journal of Botany	10	1-12	2014		
40952	0	Islam M.S.a c, Sarkar M.A.R.b, Alam M.J.a c, Kashem M.A.a c, Rafii M.Y.c d, Latif M.A.d e	Effect of number of seedling hill-1 on the growth and yield of aromatic fine rice varieties in rain fed condition	Life Science Journal	11	109-115	2014		
40953	0	Rodenburg J.a, Demont M.b, Sow A.c, Dieng I.d	Bird, weed and interaction effects on yield of irrigated lowland rice	Crop Protection	66	46-52	2014		
40954	0	Hasan M.M., Alam M.A., Monjurul Alam Mondal M., Puteh A.B.	Varietal performance and effect of planting method on yield and yield contributing characteristics of rice	Life Science Journal	11	9-13	2014		
40955	0	Harahap S.M.a, Ghulamahdi M.b, Aziz S.A.b, Sutandi A.c, Miftahudind	Endurance test of three paddy genotypes to different iron toxicity level	Journal of Agronomy	13	110-116	2014		
40956	0	Al-Shugeairy Z.a b, Islam M.S.a, Shrestha R.a c, Al-Ogaidi F.a b, Norton G.J.a, Price A.H.a	High throughput screening of rooting depth in rice using buried herbicide	Annals of Applied Biology	165	96-107	2014		
40957	0	Yazdani M.a, Kochak M.b, Bagheri H.c	Segregating rice genotypes by cluster analysis procedure at different salt stress condition	Advances in Environmental Biology	8	383-387	2014		
40958	0	Midrarullaha b c, Ahmed B.a, Mirza M.S.b	Response of rice to inoculation with plant growth promoting Rhizobacteria in control lab environment and field experiment	Pak J Bot	46	1121-1124	2014		
40959	0	Maksup S.a, Roytrakul S.b, Supaibulwatana K.a	Physiological and comparative proteomic analyses of Thai jasmine rice and two check cultivars in response to drought stress	J Plant Interact	9	43-55	2014		
40960	0	Nadarajah K.a, Omar N.S.a, Sukri H.b	Molecular isolation and characterization of the Rac GTPase gene from Oryza sativa indica cultivar UKMRC9	Aust J Crop Sci	8	558-567	2014		
40961	0	Atique-ur-Rehmana b, Farooq M.a c d, Nawaz A.a, Ahmad R.a	Influence of boron nutrition on the rice productivity, kernel quality and biofortification in different production systems	Field Crops Res.	169	123-131	2014		
40962	0	Son N.T.a, Chen C.F.a b, Chen C.R.b, Minh V.Q.c, Trung N.H.c	A comparative analysis of multitemporal MODIS EVI and NDVI data for large-scale rice yield estimation	Agricultural and Forest Meteorology	197	52-64	2014		
40963	0	Xangsayasane P.a d, Fukai S.b, Mitchell J.H.b, Jongdee B.c, Jothityangkoon D.d, Pantuwan G.c, Inthapanya P.a	Genotypic performance in multi-location on-farm trials for evaluation of different on-station screening methods for drought-prone rainfed lowland rice in Lao PDR	Field Crops Res.	160	1-11	2014		
40964	0	Liyanaarachchi G.D.a, Kottearachchi N.S.a, Samarasekera R.b	Volatile profiles of traditional aromatic rice varieties in Sri Lanka	Journal of the National Science Foundation of Sri Lanka	42	87-93	2014		
40965	0	Kijoji A.A.a b d, Nchimbi-Msolla S.a, Kanyeka Z.L.c, Serraj R.b e, Henry A.b	Linking root traits and grain yield for rainfed rice in sub-Saharan Africa: Response of Oryza sativa~Oryza glaberrima introgression lines under drought	Field Crops Res.	165	25-35	2014		
40966	0	Altop E.K.a, Mennan H.a, Streibig J.C.b, Budak U.a, Ritz C.c	Detecting ALS and ACCase herbicide tolerant accession of Echinochloa oryzoides (Ard.) Fritsch. in rice (Oryza sativa L.) fields	Crop Protection	65	202-206	2014		
40967	0	Liza M.M.J.a, Islam M.R.a, Jahiruddin M.a, Hasan M.M.b, Amirul Alam M.b, Shamsuzzaman S.M.c, Samsuri A.W.d	Residual effects of organic manures with different levels of chemical fertilizers on rice	Life Science Journal	11	6-12	2014		
40968	0	Muhammad I.a, Zia M.A.a b, Ali S.a b, Roomi S.a, Iqbal A.a, Abbas Z.a b, Ali G.M.a b	Development of efficient regeneration system in different recalcitrant rice cultivars and expression analysis of putative transgenic plants	Int J Agric Biol	16	700-706	2014		
40969	0	Khan S.K.a b, Iqbal J.a b, Saeed M.a b	Comparative study of agronomic traits of different rice varieties grown under saline and normal conditions	Journal of Animal and Plant Sciences	24	634-642	2014		
40970	0	Aydin G.a b, Yucel M.b, Chan M.T.c d, Oktem H.A.b	Evaluation of abiotic stress tolerance and physiological characteristics of potato (Solanum tuberosum L. cv. Kennebec) that heterologously expresses the rice Osmyb4 gene	Plant Biotechnol Rep	8	295-304	2014		
40971	0	Ayamdoo A.J.a, Demuyakor B.a, Saalia F.K.b, Francis A.a	Effect of varying parboiling conditions on the cooking and eating/sensory characteristics of Jasmine 85 and Nerica 14 rice varieties	American Journal of Food Technology	9	1-14	2014		
40972	0	Aslani F.a, Juraimi A.S.a, Ahmad-Hamdani M.S.a, Omar D.b, Alam M.A.a, Hashemi F.S.G.c, Hakim M.A.d, Uddin M.K.a	Allelopathic effect of methanol extracts from Tinospora tuberculata on selected crops and rice weeds	Acta Agriculturae Scandinavica Section B: Soil and Plant Science	64	165-177	2014		
40973	0	Mombeini M.a, Siadat S.A.b, Lack S.a, Gilani A.A.c, Rasekh A.R.d	Physiological responses to heat stress in rice (Oryza sativa. L): I. nitrogen status, chlorophyll content and cell membrane thermal stability (CMTS) of flag leaf	Advances in Environmental Biology	8	1420-1430	2014		
40974	0	Khwanchai P.a, Chinprahast N.a, Pichyangkura R.b, Chaiwanichsiri S.a	Gamma-aminobutyric acid and glutamic acid contents, and the GAD activity in germinated brown rice (Oryza sativa L.): Effect of rice cultivars	Food Sci. Biotechnol.	23	373-379	2014		
40975	0	Lee S.T., Huang W.L.	Osmotic stress stimulates shoot organogenesis in callus of rice (Oryza sativa L.) via auxin signaling and carbohydrate metabolism regulation	Plant Growth Regul.	73	193-204	2014		
40976	0	Daiponmak W.a, Senakun C.b, Siriamornpun S.c	Antiglycation capacity and antioxidant activities of different pigmented Thai rice	International Journal of Food Science and Technology	49	1805-1810	2014		
40977	0	Ibrahim E.A.M., Abo El-Dahab M.S.	Seed discoloration and their effect on seedlings growth of Egyptian hybrid rice	Research Journal of Seed Science	7	63-74	2014		
40978	0	Nakbanpote W., Panitlurtumpai N., Sangdee A., Sakulpone N., Sirisom P., Pimthong A.	Salt-tolerant and plant growth-promoting bacteria isolated from Zn/Cd contaminated soil: Identification and effect on rice under saline conditions	J Plant Interact	9	379-387	2014		
40979	0	Allhgholipour M.a, Farshdfar E.b, Rabiei B.c	Molecular characterization and genetic diversity analysis of different rice cultivars by microsatellite markers	Genetika	46	187-198	2014		
40980	0	Hakim M.A.a b, Juraimi A.S.c, Hanafi M.M.a, Ismail M.R.a, Rafii M.Y.a, Islam M.M.d, Selamat A.c	The effect of salinity on growth, ion accumulation and yield of rice varieties	Journal of Animal and Plant Sciences	24	874-885	2014		
40982	0	Akator S.K.a b, Adjata D.K.a, Drissa S.a, Awande S.a, Zadji L.a, Sangare G.a, Sere Y.a, Gumedzoe Y.M.D.b	Pathological studies of pyricularia oryzae at M'be in coted'ivoire and ouedeme in Benin	Asian J Plant Pathol	8	10-17	2014		
40983	0	Saeedipour S.	The combined effects of salinity and foliar spray of different hormones on some biological aspects, dry matter accumulation and yield in two varieties of Indica rice differing in their level of salt tolerance	Proceedings of the National Academy of Sciences India Section B - Biological Sciences	84	721-733	2014		
40984	0	Chadhar A.R., Nadeem M.A., Tanveer A., Yaseen M.	Weed management boosts yield in fine rice under system of rice intensification [Influencia do manejo de plantas daninhas no aumento da producao de arroz fino no sistema de intensificacao de arroz]	Planta Daninha	32	291-299	2014		
40985	0	Khavari-Nejad R.A.a b, Najafi F.a, Rezaei M.a	The Influence of Cadmium Toxicity on Some Physiological Parameters as Affected by Iron in Rice (Oryza Sativa L.) Plant	J Plant Nutr	37	1202-1213	2014		
40986	0	Alifar N.a, Zaharah A.R.a, Ishak C.F.a, Awang Y.b, Khayambashi B.a	Selenium enrichment of paddy rice grains in Malaysia	Asian Journal of Crop Science	6	345-353	2014		
40987	0	Hussain Z., Ali S., Hayat Z., Zia M.A., Iqbal A., Ali G.M.	Agrobacterium mediated transformation of DREB1A gene for improved drought tolerance in rice cultivars (Oryza sativa L.)	Aust J Crop Sci	8	1114-1123	2014		
40988	18291034	Boutrot F., Chantret N., Marie-Fran?oise Gautier	Genome-wide analysis of the rice and Arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining.	BMC Genomics	9	86	2008	_,_,_,_,_,_,OSC4,_,_,_,OSC6,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,LTP2,_,_,_,_	OsLTPd7, OsLtpV.3,OsLTPd1, OsLtpIV.1,OsLTP2.7, OsLtpII.7,OsLTP2.10, OsLtpII.10,OsLTP2.5, OsLtpII.5,OsLTPd10, OsLtpVI.2,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,OsLTP2.9, OsLtpII.9, LTP2.9, LtpII.9,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsLTP1.15, OsLtpI.15,YY1, OsLTPc2, OsLtpIII.2, LTP45,OsLTP1.5, OsLtpI.5,OsLTP1.11, OsLtpI.11,OsLTP2.1, OsLtpII.1,OsLTP2.2, OsLtpII.2,OsLTP2.6, OsLtpII.6 ,OsLTP2.8, OsLtpII.8,OsLTP2.11, OsLtpII.11,OsLTP2.12, OsLtpII.12,OsLTP2.13, OsLtpII.13,OsLTPd2, OsLtpIV.2,OsLTPd3, OsLtpIV.3,OsLTPd4, OsLtpIV.4 ,OsLTPd9, OsLtpVI.1,OsLTPd12, OsLtpVI.4,OsLTP2.4, OsLtpII.4,OsLTPd6, OsLtpV.2,OsLTP1.6, OsLtpI.6,OsLTP1.9, OsLtpI.9,OsLTP1.17, b1, LTP2, OsLtpI.17,OsLTP1.1, T42, OsLtp1.1, LTP1.1,OsLTP1.16, OsLtpI.16,OsLTP1.3, OsLtpI.3,OsLTPd8, OsLtpV.4, PI,OsLTP1.19, OsLtpI.19,OsLTP1.18, OsLTP1, nsLTP1, a15, OsLtpI.18,OsLTP1.14, OsLtpI.14,OsLTP1.13, OsLtpI.13,OsLTPx3, OsLtpY.3,OsLTP1.12, OsLtpI.12,OsLTP1.8, OsLtpI.8,OsLTP1.7, OsLtpI.7,OsLTP1.2, OsLtpI.2,OsLTP1.4, OsLtpI.4,nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,OsLTP1.10, OsLtpI.10,OsLTPx2, OsLtpY.2,OsLTPx1, OsLtpY.1,OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL
40989	18182435	Joaqu?n Medina, Mar?a Luisa Ballesteros, Salinas J.	Phylogenetic and functional analysis of Arabidopsis RCI2 genes.	J. Exp. Bot.	58(15-16)	4333-46	2007	_,_,_,_,_,_,_,_,_,_,_,_	OsRCI2-8,OsRCI2-12,OsRCI2-2,OsRCI2-3,OsRCI2-4,OsRCI2-9,OsRCI2-7,OsRCI2-5,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,OsRCI2-11, OSR8, osr8,OsRCI2-1
40990	17033811	Vij S., Akhilesh K Tyagi	Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger(s) in rice and their phylogenetic relationship with Arabidopsis.	Mol. Genet. Genomics	276(6)	565-75	2006	SAP11,SAP12,SAP8,SAP17,SAP2,SAP13,SAP14,SAP6,SAP15,SAP1,ZFP177,SAP16,SAP3,SAP4,SAP7,SAP5,SAP10,SAP18	OsDOG, OsSAP11, DOG,OsSAP12,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsSAP17,OsSAP2,OsSAP13,OsSAP14,OsSAP6,OsSAP15,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,OsSAP9, SAP9, ZFP33,OsSAP16,OsSAP3,OsSAP4,OsSAP7, OsiSAP7,OsSAP5,OsSAP10,OsSAP18
40991	19850038	Mitsuya S., Yokota Y., Fujiwara T., Mori N., Takabe T.	OsBADH1 is possibly involved in acetaldehyde oxidation in rice plant peroxisomes.	FEBS Lett.	583(22)	3625-9	2009	SK2(T)(SCL, FGR),BAD1	sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
40992	20937895	Zemach A., M Yvonne Kim, Silva P., Jessica A Rodrigues, Dotson B., Matthew D Brooks, Zilberman D.	Local DNA hypomethylation activates genes in rice endosperm.	Proc. Natl. Acad. Sci. U.S.A.	107(43)	18729-34	2010	TA2,_,_,_,_,_	ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1 ,ROS1B,DML3b,ROS1C, ROS1c, DME2,DML3a,ROS1D, ROS1d
40993	0	Hongmei C.A.I., Zhiyong SONG, Xingming LIAN	Sequence and expression analysis of CCR4-associated factor 1 (OsCAF1) gene family in rice	J Plant Mol Biol Biotechnol	2(1)	47-64	2011	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsCAF1G, CAF1G, OsCAF1-13,OsCAF1A, CAF1A, OsCAF1-12,OsCAF1-20, OsCAF1R,OsCAF1-17, OsCAF1M,OsCAF1-16, OsCAF1E,OsCAF1-3, OsCAF1-4,OsCAF1B, OsCAF1-5,OsCAF1-11,OsCAF1-10, OsCAF1C,OsCAF1-6, OsCAF1D,OsCAF1-14, OsCAF1F,OsCAF1-15, OsCAF1I,OsCAF1-9, OsCAF1J,OsCAF1-8, OsCAF1K,OsCAF1-7, OsCAF1L,OsCAF1-21, OsCAF1N,OsCAF1-18, OsCAF1O,OsCAF1-19, OsCAF1P,OsCAF1-2, OsCAF1Q,OsCAF1H, CAF1H, OsCAF1-1
40994	20421740	Justin W Walley, Dior R Kelley, Savchenko T., Dehesh K.	Investigating the function of CAF1 deadenylases during plant stress responses.	Plant Signal Behav	5(7)	802-5	2010	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsCAF1-17, OsCAF1M,OsCAF1H, CAF1H, OsCAF1-1,OsCAF1A, CAF1A, OsCAF1-12,OsCAF1G, CAF1G, OsCAF1-13,OsCAF1-19, OsCAF1P,OsCAF1-21, OsCAF1N,OsCAF1-7, OsCAF1L,OsCAF1-8, OsCAF1K,OsCAF1-9, OsCAF1J,OsCAF1-14, OsCAF1F,OsCAF1-15, OsCAF1I,OsCAF1-16, OsCAF1E,OsCAF1-6, OsCAF1D,OsCAF1-10, OsCAF1C,OsCAF1-18, OsCAF1O,OsCAF1B, OsCAF1-5
40995	25194027	Tsuda K., Kurata N., Ohyanagi H., Hake S.	Genome-Wide Study of KNOX Regulatory Network Reveals Brassinosteroid Catabolic Genes Important for Shoot Meristem Function in Rice.	Plant Cell	26(9)	3488-500	2014	CYP734A6,CYP734A4,CYP734A5,CYP734A2,OSH1	OsCYP734A6 ,OsCYP734A4,,OsCYP734A2,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
40996	25228344	Farquharson K.L.	A Rice KNOX Transcription Factor Represses Brassinosteroid Production in the Shoot Apical Meristem.	Plant Cell	26(9)	3469	2014	CYP734A4,OSH1,CYP734A6,CYP734A2	OsCYP734A4,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsCYP734A6 ,OsCYP734A2
40997	17363107	Jae Hyung Ko, Bong Gyu Kim, Jeong Ho Kim, Kim H., Chae Eun Lim, Lim J., Lee C., Lim Y., Joong-Hoon Ahn	Four glucosyltransferases from rice: cDNA cloning, expression, and characterization.	J. Plant Physiol.	165(4)	435-44	2008	_,UGT706C1,UGT707A3,UGT706D1	UGT709A4,OsUGT706C1,OsUGT707A3,UGT, OsUGT706D1
40998	0	Hasthanasombut S., Paisarnwipatpong N., Triwitayakorn K., Kirdmanee C., Supaibulwatana K.	Expression of OsBADH1 gene in Indica rice (Oryza sativa L.) in correlation with salt, plasmolysis, temperature and light stresses	Plant Omics Journal	4(7)	400-407	2011	BAD1	Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 
40999	20590996	Liu Z., Bao W., Liang W., Yin J., Zhang D.	Identification of GAMYB-4 and analysis of the regulatory role of GAMYB in rice anther development.	J Integr Plant Biol	52(7)	670-8	2010	UDT1,TDR,GAMYB	Udt1, bHLH164, OsUDT1, OsbHLH164 ,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB
41000	23025662	Guo J.X., Liu Y.G.	Molecular control of male reproductive development and pollen fertility in rice.	J Integr Plant Biol	54(12)	967-78, i	2012	RTS	RTS, RTS2
41001	24131983	Nakamura H., You-Lin Xue, Miyakawa T., Hou F., Hui-Min Qin, Fukui K., Shi X., Ito E., Ito S., Seung-Hyun Park, Miyauchi Y., Asano A., Totsuka N., Ueda T., Tanokura M., Asami T.	Molecular mechanism of strigolactone perception by DWARF14.	Nat Commun	4	2613	2013	GID1,D14	gid1, OsGID1, Thl, Os GID1,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4
41002	21788985	Wang F., Xing Wang Deng	Plant ubiquitin-proteasome pathway and its role in gibberellin signaling.	Cell Res.	21(9)	1286-94	2011	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
41003	15491922	Laetitia Perfus-Barbeoch, Alan M Jones, Sarah M Assmann	Plant heterotrimeric G protein function: insights from Arabidopsis and rice mutants.	Curr. Opin. Plant Biol.	7(6)	719-31	2004	D1,RAC1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
41004	17470057	Kong H., Lena L Landherr, Michael W Frohlich, Jim Leebens-Mack, Ma H., Claude W dePamphilis	Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth.	Plant J.	50(5)	873-85	2007	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OSK17,OSK15,OSK16,OSK22,OSK14,OSK11,OSK1, SKP1, OsSKP1,OSK2,OSK28,OSK12,OSK18,OSK27,OSK20,OSK5,OSK25,OSK6,OSK9,OSK8,OSK10,OSK4,OSK19,OSK13,OSK7,OSK30,OSK29,OSK23,OSK3,OSK21,OSK26
41005	19120446	Ilg A., Beyer P., Salim Al-Babili	Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranial biosynthesis.	FEBS J.	276(3)	736-47	2009	_	OsCCD1, CCD1
41006	19767386	Vallabhaneni R., Cynthia E Gallagher, Licciardello N., Abby J Cuttriss, Rena F Quinlan, Eleanore T Wurtzel	Metabolite sorting of a germplasm collection reveals the hydroxylase3 locus as a new target for maize provitamin A biofortification.	Plant Physiol.	151(3)	1635-45	2009	_,_,_	OsBCH2, BCH2, OsHYD1, HYD1,DSM2, OsDSM2, OsBCH1, OsHYD3,OsBCH3, OsHYD2
41007	21828105	Qin F., Shinozaki K., Kazuko Yamaguchi-Shinozaki	Achievements and challenges in understanding plant abiotic stress responses and tolerance.	Plant Cell Physiol.	52(9)	1569-82	2011	NAC5,_,NAC6	OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
41008	0	Okada T., Nakayama H., Shinmyo A., Yoshida K.	Expression of OsHAK genes encoding potassium ion transporters in rice	Plant Biotechnology	25(3)	241-245	2008	HAK12,HAK7,HAK3,HAK5,HAK6,HAK16,HAK2,HAK8,HAK13,HAK15,LCS,HAK9,HAK4,HAK14,HAK17,HAK11,HAK10	OsHAK12,OsHAK7,OsHAK3,OsHAK5, FCO13, OsFCO13,OsHAK6, OsSTA42,OsHAK16,OsHAK2,OsHAK8,OsHAK13,OsHAK15,OsHAK1, HAK1,OsHAK9,OsHAK4,OsHAK14,OsHAK17, FCO3, FCO4,OsHAK11,OsHAK10
41009	25230811	Gong P., Quan H., He C.	Targeting MAGO proteins with a peptide aptamer reinforces their essential roles in multiple rice developmental pathways.	Plant J.			2014	_,_,_,_	OsMAGO1, MAGO1,mago, OsMAGO2, MAGO2 ,OsY14a, Y14a ,OsY14b, Y14b
41010	19682292	Yong-Mei Bi, Kant S., Clarke J., Clark J., Gidda S., Ming F., Xu J., Rochon A., Barry J Shelp, Hao L., Zhao R., Robert T Mullen, Zhu T., Steven J Rothstein	Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling.	Plant Cell Environ.	32(12)	1749-60	2009	_,_,_,_,_,ENOD93A	OsENOD93,UDP-GT, OsENOD93-1,OsENOD93,OsENOD93,OsENOD93, ENOD93,OsENOD93a
41011	25535376	Xian Jun Song, Kuroha T., Ayano M., Furuta T., Nagai K., Komeda N., Segami S., Miura K., Ogawa D., Kamura T., Suzuki T., Higashiyama T., Yamasaki M., Mori H., Inukai Y., Wu J., Kitano H., Sakakibara H., Steven E Jacobsen, Ashikari M.	Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(1)	76-81	2015	_	OsglHAT1, glHAT1, GW6a
41012	25368893	Zeigler R.	Perspective: Time to unleash rice.	Nature	514(7524)	S66	2014		
41013	25368886	Elert E.	Rice by the numbers: A good grain.	Nature	514(7524)	S50-1	2014		
41014	25368891	Sohn E.	Contamination: The toxic side of rice.	Nature	514(7524)	S62-3	2014		
41015	25368890	Cheung F.	Yield: The search for the rice of the future.	Nature	514(7524)	S60-1	2014		
41016	25368885	Woolston C.	Rice.	Nature	514(7524)	S49	2014		
41017	25301663	Singh I., Shah K.	Exogenous application of methyl jasmonate lowers the effect of cadmium-induced oxidative injury in rice seedlings.	Phytochemistry			2014		
41018	25278554	Zhang L., Tang D., Luo Q., Chen X., Wang H., Li Y., Cheng Z.	Crossover Formation During Rice Meiosis Relies on Interaction of OsMSH4 and OsMSH5.	Genetics			2014	_,_,_,RMC1,_	HEI10, HEI10A, HEI10B, OsHEI10,OsMSH5, MSH5,OsMSH4, MSH4,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsZIP4, ZIP4, SPO22
41019	25352666	Wu S., Lee C.M., Hayashi T., Price S., Divol F., Henry S., Pauluzzi G., Perin C., Gallagher K.L.	A plausible mechanism, based upon SHORT-ROOT movement, for regulating the number of cortex cell layers in roots.	Proc. Natl. Acad. Sci. U.S.A.			2014	SCR,SHR2,SHR1,SCR1	OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41
41020	25368889	Callaway E.	Domestication: The birth of rice.	Nature	514(7524)	S58-9	2014		
41021	25331872	Song W.Y., Yamaki T., Yamaji N., Ko D., Jung K.H., Fujii-Kashino M., An G., Martinoia E., Lee Y., Ma J.F.	A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain.	Proc. Natl. Acad. Sci. U.S.A.	111(44)	15699-704	2014	MRP1	OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1
41022	25368887	Dayton L.	Agribiotechnology: Blue-sky rice.	Nature	514(7524)	S52-4	2014		
41023	25368197	Zhang Q.J., Zhu T., Xia E.H., Shi C., Liu Y.L., Zhang Y., Liu Y., Jiang W.K., Zhao Y.J., Mao S.Y., Zhang L.P., Huang H., Jiao J.Y., Xu P.Z., Yao Q.Y., Zeng F.C., Yang L.L., Gao J., Tao D.Y., Wang Y.J., Bennetzen J.L., Gao L.Z.	Rapid diversification of five Oryza AA genomes associated with rice adaptation.	Proc. Natl. Acad. Sci. U.S.A.			2014	_,_,_,SDG725,_,_,_,_,_,XTH27,_,_,WAF1,_	MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96,OsCRY2, CRY2,SEC5,OsSDG725, OsSET8, ASHH2,OsERdj3A, TMS1,TAF6,PDIL2;2, PDIL2-2, PDIL 2-2, OsPDIL2-2,PG,PEP,OsXTH27, XTH,PFT1, OsMED25_1, MED25_1 ,LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35,waf1, waf1-1, waf1-2, HEN1,OsVIL3, OsVIL4, VIL1
41024	25368149	Burney J., Ramanathan V.	Recent climate and air pollution impacts on Indian agriculture.	Proc. Natl. Acad. Sci. U.S.A.			2014		
41026	25378698	Gao H., Jin M., Zheng X.M., Chen J., Yuan D., Xin Y., Wang M., Huang D., Zhang Z., Zhou K., Sheng P., Ma J., Ma W., Deng H., Jiang L., Liu S., Wang H., Wu C., Yuan L., Wan J.	Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.	Proc. Natl. Acad. Sci. U.S.A.			2014	PHYB,HD2,GHD7,HD3A,HD5,RFT1,EF1	phyB, PHYB1, OsPHYB, OsphyB,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
41027	25433632	Joo S.H., Jang M.S., Kim M.K., Lee J.E., Kim S.K.	Biosynthetic relationship between C28-brassinosteroids and C29-brassinosteroids in rice (Oryza sativa) seedlings.	Phytochemistry			2014		
41028	25409830	Gray J.M., Frolking S., Kort E.A., Ray D.K., Kucharik C.J., Ramankutty N., Friedl M.A.	Direct human influence on atmospheric CO2 seasonality from increased cropland productivity.	Nature	515(7527)	398-401	2014		
41029	25480370	Chi W., He B., Manavski N., Mao J., Ji D., Lu C., Rochaix J.D., Meurer J., Zhang L.	RHON1 Mediates a Rho-Like Activity for Transcription Termination in Plastids of Arabidopsis thaliana.	Plant Cell			2014	BP73	BP-73, OsBP-73, Riaa1, Os-BP-73
41030	25512547	Schubert M., J?nsson H., Chang D., Der Sarkissian C., Ermini L., Ginolhac A., Albrechtsen A., Dupanloup I., Foucal A., Petersen B., Fumagalli M., Raghavan M., Seguin-Orlando A., Korneliussen T.S., Velazquez A.M., Stenderup J., Hoover C.A., Rubin C.J., Alfarhan A.H., Alquraishi S.A., Al-Rasheid KA., MacHugh DE., Kalbfleisch T., MacLeod JN., Rubin E.M., Sicheritz-Ponten T., Andersson L., Hofreiter M., Marques-Bonet T., Gilbert M.T., Nielsen R., Excoffier L., Willerslev E., Shapiro B., Orlando L.	Prehistoric genomes reveal the genetic foundation and cost of horse domestication.	Proc. Natl. Acad. Sci. U.S.A.	111(52)	E5661-9	2014		
41031	25489116		Correction for Gao et al., Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice.	Proc. Natl. Acad. Sci. U.S.A.	111(51)	18399	2014		
41032	25316064	Lu Q., Ding S., Reiland S., R?diger A., Roschitzki B., Xue P., Gruissem W., Lu C., Baginsky S.	Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).	J. Exp. Bot.			2014		
41033	25358295	Lu F., Wang H., Wang S., Jiang W., Shan C., Li B., Yang J., Zhang S., Sun W.	Enhancement of innate immune system in monocot rice by transferring the dicotyledonous elongation factor Tu receptor.	J Integr Plant Biol			2014	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
41034	25332358	Xia X., Fan X., Wei J., Feng H., Qu H., Xie D., Miller A.J., Xu G.	Rice nitrate transporter OsNPF2.4 functions in low-affinity acquisition and long-distance transport.	J. Exp. Bot.			2014	_	OsNPF2.4, NPF2.4
41035	25299339	Frahm G.E., Smith D.G., Kane A., Lorbetskie B., Cyr T.D., Girard M., Johnston M.J.	Determination of Supplier-to-Supplier and Lot-to-Lot Variability in Glycation of Recombinant Human Serum Albumin Expressed in Oryza sativa.	PLoS ONE	9(10)	e109893	2014		
41036	25315105	Deng M., Hu B., Xu L., Liu Y., Wang F., Zhao H., Wei X., Wang J., Yi K.	OsCYCP1;1, a PHO80 homologous protein, negatively regulates phosphate starvation signaling in the roots of rice (Oryza sativa L.).	Plant Mol. Biol.			2014	CYCU3;1,CYCU4;3,CYCU2;1,CYCU1;1,_,PHR2,_,CYCU4;4	CycU3;1, CycU3;os;1, Orysa;CycU3;1, OsCYCP1;1,CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1,CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2,CycU1;1, CycU1;os;1, Orysa;CycU1;1, OsCYCP2;1,OsCYCP4;3,OsPHR2, Os-PHR2,OsCYCP4;4,CycU4;4, CycU4;os;4, Orysa;CycU4;4, OsCYCP4;2
41037	25372696	McAndrew R., Pruitt R.N., Kamita S.G., Pereira J.H., Majumdar D., Hammock B.D., Adams P.D., Ronald P.C.	Structure of the OsSERK2 leucine-rich repeat extracellular domain.	Acta Crystallogr. D Biol. Crystallogr.	70(Pt 11)	3080-6	2014	_	OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2
41038	25336568	Jung K.H., Kim S.R., Giong H.K., Nguyen M.X., Go H.J., An G.	Genome-wide Identification and Functional Analysis of Genes Expressed Ubiquitously in Rice.	Mol Plant			2014	D1,_,_,_,_,GID1,SLR1,TPC1	d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,,OsDDM1a, DDM1a,HDA704,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsTPC1, Tpc1, OsCC1, OsCL1 pore
41039	25311683	Tuteja N., Tarique M., Tuteja R.	Rice SUV3 is a bidirectional helicase that binds both DNA and RNA.	BMC Plant Biol.	14(1)	283	2014	_	OsSUV3, SUV3
41040	25336684	Toyomasu T., Usui M., Sugawara C., Kanno Y., Sakai A., Takahashi H., Nakazono M., Kuroda M., Miyamoto K., Morimoto Y., Mitsuhashi W., Okada K., Yamaguchi S., Yamane H.	Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles.	J. Exp. Bot.			2014	CPS1,CPS2	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2
41041	25335639	Ao Y., Li Z., Feng D., Xiong F., Liu J., Li J.F., Wang M., Wang J., Liu B., Wang H.B.	OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.	Plant J.			2014	RLCK176,_,_,CEBiP,_	OsRLCK176,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,LYP4, Os-LYP4, OsLYP4,CEBIP, Os-LYP1, LYP1, OsCEBiP,LYP6, Os-LYP6, OsLYP6
41042	25324400	Zhang J., Tang W., Huang Y., Niu X., Zhao Y., Han Y., Liu Y.	Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice.	J. Exp. Bot.			2014	MFO1,LHS1,EG1,CRL1L3	OsMADS6, MADS6, OsMFO1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,eg1, GY1,OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2
41043	25280591	Nawaz Z., Kakar K.U., Saand M.A., Shu Q.Y.	Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses.	BMC Genomics	15(1)	853	2014	CNGC5,CNGC11,CNGC16,CNGC1,CNGC4,CNGC15,CNGC2,CNGC17,CNGC3,CNGC6,CNGC8,CNGC12,CNGC10,CNGC14,CNGC7,CNGC9	OsCNGC5, OsCNGC10 ,OsCNGC11, OsCNGC13, CNGC13, SSS1-D ,OsCNGC16, OsCNGC8, OsSTA273,OsCNGC1, OsCNGC15, CNGC15,OsCNGC4, OsCNGC12 ,OsCNGC15, OsCNGC9 ,OsCNGC2, OsCNGC1 ,OsCNGC17, OsCNGC5, OsSTA282,OsCNGC3, OsCNGC7 ,OsCNGC6, OsCNGC4, OsSTA107,OsCNGC8, OsCNGC6, OsCNGC9,OsCNGC12, OsCNGC2 ,OsCNGC10, OsCNGC11 ,OsCNGC14, OsCNGC3,OsCNGC7, OsCNGC14 ,OsCNGC9, OsCNGC16 
41044	25283804	Chen M., Zhao Y., Zhuo C., Lu S., Guo Z.	Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.	Plant Biotechnol. J.			2014	NCED1,HAP5C,HAP5B,DREB1B,P5CS,HAP5D,HAP5E,LEA3-1,HAP5A,HAP5F,RAB16A,DREB1A,DREB2A,DHN1,HAP5G,_	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1
41045	25311360	Zhao H., Ma T., Wang X., Deng Y., Ma H., Zhang R., Zhao J.	OsAUX1 controls lateral root initiation in rice (Oryza sativa L.).	Plant Cell Environ.			2014	IAA23,_,CYCD4;1,_,_,IAA19,CYCD5;1	OsIAA23,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,Os_F0767, OsTIR1,OsCDKC;2, OsCDK2,OsIAA19,CycD5;1, CycD5;os;1, Orysa;CycD5;1, Orysa;CYCD5;1, OsCYCD5;2
41046	25270993	Liu S.J., Xu H.H., Wang W.Q., Li N., Wang W.P., M?ller IM., Song S.Q.	A proteomic analysis of rice seed germination as affected by high temperature and ABA treatment.	Physiol Plant			2014	GLUA3,TUBA1,_,_,WX1,CPA1,SPDS1	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,OsTubA1, TubA1, OS-TubA3, TubA3,,OsEnS-59,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsCPA1,OsSPDS1, OsSPDS, SPDS
41047	25287121	Ogilvie H.A., Imin N., Djordjevic M.A.	Diversification of the C-TERMINALLY ENCODED PEPTIDE (CEP) gene family in angiosperms, and evolution of plant-family specific CEP genes.	BMC Genomics	15(1)	870	2014	_,_,_,_,_,_	OsCEP6, CEP6, OsCEP6.1, CEP6.1,OsCEP7, CEP7, OsCEP7.1, CEP7.1,OsCEP2, CEP2, OsCEP4, CEP4,OsCEP3, CEP3,OsCEP5, CEP5,OsCEP1, CEP1
41048	25318938	You J., Zong W., Hu H., Li X., Xiao J., Xiong L.	A SNAC1-regulated protein phosphatase gene OsPP18 modulates drought and oxidative stress tolerance through ABA-independent reactive oxygen species scavenging in rice.	Plant Physiol.			2014	_,_	OsPP2C10, PP2C10, OsPP18,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1
41049	25353370	Wu J., Zhu C., Pang J., Zhang X., Yang C., Xia G., Tian Y., He C.	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of GA biosynthesis in Oryza sativa.	Plant J.			2014	D35,RISBZ1,_,SODCC2	d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsLSD1, OsLOL1, OsLSD1.1, LSD1.1, LSD1,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2
41050	25014590	Yokotani N., Tsuchida-Mayama T., Ichikawa H., Mitsuda N., Ohme-Takagi M., Kaku H., Minami E., Nishizawa Y.	OsNAC111, a blast disease-responsive transcription factor in rice, positively regulates the expression of defense-related genes.	Mol. Plant Microbe Interact.	27(10)	1027-34	2014	_,_,_,_,WAK20,PR4B,RLCK16,NAC17,_,_,_,_,_,_,WRKY77,_,CHT11,_,WAK112,_,RPP17,_,CPS4,_,CHT3,WRKY19,_,_	RIR1b, Rir1b, OsRALF-30, OsRALF30, RALF-30, RALF30,,OsPR1, OsPR1a, PR1a, PR1,Gns6,OsWAK20,OsPR4b, OsPR-4b,OsRLCK16,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,,Gns10,,,,,OsWRKY77, WRKY-77,,Cht11,OsLP, PR-5, 14b,OsWAK112, OsWAK112d ,,Rpp17, FIERG1, OsERG1, OsERG1a, OsERG1b,OsPR2, PR2, OsGlu1, Glu1,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11,OsWRKY19,DRR206,C10728, OsChib3a 
41051	25371504	Martinez D.E., Borniego M.L., Battchikova N., Aro E.M., Tyystj?rvi E., Guiam?t JJ.	SASP, a Senescence-Associated Subtilisin Protease, is involved in reproductive development and determination of silique number in Arabidopsis.	J. Exp. Bot.			2014	_	OsSub22, SUB22, OsSASP, SASP 
41052	25374002	Wang J., Shimada M., Kato Y., Kusada M., Nagaoka S.	Cholesterol-lowering effect of rice bran protein containing bile acid-binding proteins.	Biosci. Biotechnol. Biochem.		1-6	2014		
41053	25367381	Xiao N., Huang W.N., Li A.H., Gao Y., Li Y.H., Pan C.H., Ji H., Zhang X.X., Dai Y., Dai Z.Y., Chen J.M.	Fine mapping of the qLOP2 and qPSR2-1 loci associated with chilling stress tolerance of wild rice seedlings.	Theor. Appl. Genet.			2014	DREB1G	OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I
41054	25398395	Abrah?m E., Yu P., Farkas I., Darula Z., Varga E., Luk?cs N., Ayaydin F., Medzihradszky K.F., Dombr?di V., Dudits D., Horv?th GV.	The B regulatory subunit of protein phosphatase 2A mediates the dephosphorylation of rice retinoblastoma-related protein-1.	Plant Mol. Biol.			2014	_,_,PP2A-B''	Orysa;Rb2, RBR2, OsRBR1,Orysa;Rb1, RBR1, OsRBR2,OsPP2A-B''
41055	25385766	Wu F., Sheng P., Tan J., Chen X., Lu G., Ma W., Heng Y., Lin Q., Zhu S., Wang J., Wang J., Guo X., Zhang X., Lei C., Wan J.	Plasma membrane receptor-like kinase Leaf Panicle 2 acts downstream of the DROUGHT AND SALT TOLERANCE transcription factor to regulate drought sensitivity in rice.	J. Exp. Bot.			2014	PIP2;3,PIP1;3,DST,PIP1A,_	OsPIP2;3, PIP2-3, OsPIP2-2,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsDST,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,LP2, OsLP2
41056	25388636	Ishikawa K., Yamaguchi K., Sakamoto K., Yoshimura S., Inoue K., Tsuge S., Kojima C., Kawasaki T.	Bacterial effector modulation of host E3 ligase activity suppresses PAMP-triggered immunity in rice.	Nat Commun	5	5430	2014	_,_,_	OsPUB46,OsPUB45,OsPUB44
41057	25399351	Nguyen Q.N., Lee Y.S., Cho L.H., Jeong H.J., An G., Jung K.H.	Genome-wide identification and analysis of Catharanthus roseus RLK1-like kinases in rice.	Planta			2014	_,SE1,RLCK161,_,_,_,_,_,_,_,_,DRUS1,GI,_,_,DRUS2,RLCK183,RLCK193	OsCrRLK1L12,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsRLCK161, OsCrRLK1L9 ,OsCrRLK1L1,OsCrRLK1L3,OsCrRLK1L16,OsCrRLK1L14,OsCrRLK1L6,OsCrRLK1L10,OsCrRLK1L7,OsCrRLK1L4,OsCrRLK1L8, CrRLK1L8, FLR1,OsGI, Gi, Os-GI,YK11, OsCrRLK1L11,OsCrRLK1L15,YK1, OsCrRLK1L5,OsRLCK183, OsCrRLK1L2,OsRLCK193, OsCrRLK1L13 
41058	25402448	Fukayama H., Masumoto C., Taniguchi Y., Baba-Kasai A., Katoh Y., Ohkawa H., Miyao M.	Characterization and expression analyses of two plastidic enolase genes in rice.	Biosci. Biotechnol. Biochem.		1-8	2014	_,_,_,_,_,_	OsEno3, Eno3,OsEno2, Eno2,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4,OsEno6, Eno6,OsEno1, Eno1 ,OsEno5, Eno5
41059	25433856	Yang S., Hao D., Cong Y., Jin M., Su Y.	The rice OsAMT1;1 is a proton-independent feedback regulated ammonium transporter.	Plant Cell Rep.	34(2)	321-30	2015	AMT1;1	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
41060	25430981	Lee G.W., Lee S., Chung M.S., Jeong Y.S., Chung B.Y.	Rice terpene synthase 20 (OsTPS20) plays an important role in producing terpene volatiles in response to abiotic stresses.	Protoplasma			2014	_,CPS4,KS2,_,_,_,_,CPS1,KS6,KS5,_,_,_,_,KS8,_,_,KS1,_,KS4,_,_,CPS2,_,_,_,_,KSL10,_,KS3,_,_,KS7	OsTPS22,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsKS2, KS2, KSL2, OsKSL2, OsTPS27,OsTPS2,OsTPS11,OsTPS12,OsTPS14,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsKS6, KS6, KSL6, OsKSL6, KS5, OsKS5, OsTPS9,OsKS5, KS5, KSL5, OsKSL5, KSL5i, OsKSL5i, KSL5j, OsKSL5j, KS6, OsKS6, OsTPS8,OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10,OsTPS29, TPS29, OsCAS, CAS, OsTPS3, TPS3,OsTPS23, TPS23,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,OsTPS20, TPS20,OsTPS5, TPS5,OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsTPS24, TPS24,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsTPS19, TPS19,OsTPS3, TPS3, OsLIS, LIS,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsTPS10, TPS10,OsTPS17,OsTPS21,OsTPS18,OsKSL10, KS10, OsKS10, OsTPS33,OsTPS13,OsKS3, OSKS3, KS3, KSL3, OsKSL3, OsKS2, KS2, OsTPS25,OsTPS1,TPS, OsTPS30,OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6
41061	25426937	Song A., Li P., Fan F., Li Z., Liang Y.	The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress.	PLoS ONE	9(11)	e113782	2014	PSAH,_,_,_,_,PSBY	PsaH, GOS5,Lhca6, OsLhca6,PetC,FNR, PetH,CP24, Lhcb6,PsbY
41062	25418842	Li F., Zhang M., Guo K., Hu Z., Zhang R., Feng Y., Yi X., Zou W., Wang L., Wu C., Tian J., Lu T., Xie G., Peng L.	High-level hemicellulosic arabinose predominately affects lignocellulose crystallinity for genetically enhancing both plant lodging resistance and biomass enzymatic digestibility in rice mutants.	Plant Biotechnol. J.			2014	XAT2,GH9B3,_,GH9B1,GH9B16,_	OsXAT2,OsGH9B3,OsIRX9, IRX9, OsGT43C/OsIRX9, OsGT43C,OsGH9B1,OsGH9B16,OsIRX14, IRX14, OsGT43J, GT43J, OsGT43J/OsIRX14
41063	25546583	Li Z., Su D., Lei B., Wang F., Geng W., Pan G., Cheng F.	Transcriptional profile of genes involved in ascorbate glutathione cycle in senescing leaves for an early senescence leaf (esl) rice mutant.	J. Plant Physiol.	176C	1-15	2014	_,APX6,DHAR1,_,_,APX8,APX5,APX2,DHAR2,APX3,_,_,_,_,_,_,APX4,APX1,APX7	OsMDAR2, OsMDHAR2, MDAR2, MDHAR2, OsMDHAR4, MDHAR4,OsAPx6, OsAPx06, OSAPX6, APx6,OsDHAR1, DHAR, cytDHAR, OsDHAR,OsMDAR1, OsMDHAR1,OsMDAR5, OsMDHAR5,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx5, OsAPx05, OSAPX5, APx5,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsDHAR2,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR3, MDHAR1, OsMDHAR1,OsMDAR4, OsMDHAR4,OsGR1, GR1,OsGR1, GR1, OsGR2,ESL,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX
41064	25449122	Shahpiri A., Soleimanifard I., Asadollahi M.A.	Functional characterization of a type 3 metallolthionein isoform (OsMTI-3a) from rice.	Int. J. Biol. Macromol.	73	154-9	2015	MTI3A	OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a
41065	25578276	Dong X., Gao Y., Chen W., Wang W., Gong L., Liu X., Luo J.	Spatiotemporal distribution of phenolamides and the genetics of natural variation of hydroxycinnamoyl spermidine in rice.	Mol Plant	8(1)	111-21	2015	_,_	,HSR201
41066	25487714	Goto S., Sasakura-Shimoda F., Suetsugu M., Selvaraj M.G., Hayashi N., Yamazaki M., Ishitani M., Shimono M., Sugano S., Matsushita A., Tanabata T., Takatsuji H.	Development of disease-resistant rice by optimized expression of WRKY45.	Plant Biotechnol. J.			2014	WRKY45	OsWRKY45
41067	25505033	Muramatsu M., Suzuki R., Yamazaki T., Miyao M.	Comparison of Plant-Type Phosphoenolpyruvate Carboxylases from Rice: Identification of Two Plant-Specific Regulatory Regions of the Allosteric Enzyme.	Plant Cell Physiol.			2014	_,_,_,_,_	Osppc3, Osppc2, ppc3,ppc2,PEPC-2, Osppc4, ppc4,Osppc, OSPPC, Osppc2a, ppc2a,PEPC-1, Osppc1, ppc1,Osppc2b, ppc2b
41068	25486886	Zhou Y., Zhang C., Lin J., Yang Y., Peng Y., Tang D., Zhao X., Zhu Y., Liu X.	Over-expression of a Glutamate dehydrogenase gene, MgGDH, from Magnaporthe grisea confers tolerance to dehydration stress in transgenic rice.	Planta			2014	RAB16A,LEA3-1	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
41069	25515696	Tonnessen B.W., Manosalva P., Lang J.M., Baraoidan M., Bordeos A., Mauleon R., Oard J., Hulbert S., Leung H., Leach J.E.	Rice phenylalanine ammonia-lyase gene OsPAL4 is associated with broad spectrum disease resistance.	Plant Mol. Biol.			2014	_,_,PAL1,_,PAL,_,_,_,PAL1	PAL03, OsPAL8 ,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,OsPAL05, PAL05, OsPAL3, PAL5, PAL3,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1
41070	25543954	Lakra N., Nutan K.K., Das P., Anwar K., Singla-Pareek SL., Pareek A.	A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery.	J. Plant Physiol.	176C	36-46	2014	BZIP3	OsbZIP03, OsbZIP3, OsHBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3
41071	25541357	Shaykholeslam Esfahani E., Shahpiri A.	Thioredoxin h isoforms from rice are differentially reduced by NADPH/thioredoxin or GSH/glutaredoxin systems.	Int. J. Biol. Macromol.	74C	243-248	2014	TRXH,NTRB,TRXH7,NTRA,GRX,TRXH9	trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsNTRB, NtrB,OsTRXh7, OsTrx1,OsNTRA, NtrA,grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2,OsTRXh9, OsTrx20
41072	25496595	Takeuchi K., Noda N., Katayose Y., Mukai Y., Numa H., Yamada K., Someya N.	Rhizoxin analogs contribute to the biocontrol activity of newly isolated Pseudomonas strain.	Mol. Plant Microbe Interact.			2014		
41073	25404280	Li W., Yoshida A., Takahashi M., Maekawa M., Kojima M., Sakakibara H., Kyozuka J.	SAD1, an RNA polymerase?I subunit A34.5 of rice, interacts with Mediator and controls various aspects of plant development.	Plant J.	81(2)	282-91	2015	_,_,_,_,_,_,_,_,_,DGS1,_,_,_,_,_,_,D14	OsMED7, MED7, OsMed7_1, Med7_1 ,OsMED4,OsMED19a,SAD1,OsMED9, MED9, OsMED9_1, MED9_1 ,OsTFIIF2-1, OsRAP30-1,OsTFIIF2-2, OsRAP30-2,OsRPA49,SAD1L,OsRPC53, RPC4 ,OsMED31b, MED31b, OsMed31_2, Med31_2 ,OsMED6, MED6, OsMed6_1, Med6_1 ,OsMED21, MED21, OsMed21_1, Med21_1,OsMED19b, MED19b, OsMed19_1 , Med19_1 ,OsMED10, MED10, OsMed10_1, Med10_1 ,OsMED31a, MED31a, OsMed31_1, Med31_1 ,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4
41074	25496090	Suzuki K., Aoki N., Matsumura H., Okamura M., Ohsugi R., Shimono H.	Cooling water before panicle initiation increases chilling-induced male sterility and disables chilling-induced expression of genes encoding OsFKBP65 and heat shock proteins in rice spikelets.	Plant Cell Environ.			2014	PCL1,APX1,_,_,DHAR1,HSFB2C,HSP18.0-CII,APX2,ABA8OX1,WRKY71,DREB1A,_,SODCC2,GIF1,_,DHAR2,_,HSFC1B,_,CATC,CATB,SODCC1,CATA,DREB1B,PRR95,_	OsPCL1,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsMYB2, MYB2,Hsp90, OsHSP90.1,OsDHAR1, DHAR, cytDHAR, OsDHAR,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OsWRKY71, WRKY-71,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,gif1, CIN2, OsCIN2, OsGIF1,OsFKBP62b, OsFKBP65,OsDHAR2,RS5, OsRS5,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, HSF11,  rHsf11,OSINV4, OsINV4, INV4, OsCIN3,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsDjC45
41075	25429996	Ohashi M., Ishiyama K., Kusano M., Fukushima A., Kojima S., Hanada A., Kanno K., Hayakawa T., Seto Y., Kyozuka J., Yamaguchi S., Yamaya T.	Lack of cytosolic glutamine synthetase1;2 in vascular tissues of axillary buds causes severe reduction in their outgrowth and disorder of metabolic balance in rice seedlings.	Plant J.	81(2)	347-56	2015	GLT1,GLN1;2	OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
41076	25523384	Kumari S., Joshi R., Singh K., Roy S., Tripathi A.K., Singh P., Singla-Pareek SL., Pareek A.	Expression of a cyclophilin OsCyp2-P isolated from a salt-tolerant landrace of rice in tobacco alleviates stress via ion homeostasis and limiting ROS accumulation.	Funct. Integr. Genomics			2014	CYP38,CYP21-4,CYP23,CYP37,CYP26-2,CYP95,CYP19-3,CYP40B,CYP20-3,CYP18-2,CYP20-1,CYP35,CYP22,CYP124,CYP63,CYP65,CYP59A,CYP57,CYP20-2,CYP40A,CYP18-1,CYP18-4,CYP17,CYP21-1,CYP28,CYP59B,CYP71,CYP19-4,LRT2	OsCYP38, OsCYP38a, OsCYP38b,OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c,OsCYP23, OsCYP-28, OsCYP23a, OsCYP23b, OsCYP23c,OsCYP37, OsCYP37a, OsCYP37b,OsCYP26-2, OsCYP-1, OsCYP26-1,OsCYP95, OsCYP-6, OsCYP95a, OsCYP95b,OsCYP19-3, Cyp1, OsCYP-25, OsCYP19-2a, OsCYP19-2b,OsCYP40b, OsCYP-8, OsCYP40-2,OsCYP20-3, OsCYP-5,OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b,OsCYP35,OsCYP22, OsCYP-10,OsCYP124,OsCYP63, OsCYP-18,OsCYP65, OsCYP-9,OsCYP59a, OsCYP-14, OsCYP59-1,OsCYP57, OsCYP-3, OsCYP57a, OsCYP57b,OsCYP20-2, OsCYP-11,OsCYP40a, OsCYP-13, OsCYP40-1a, OsCYP40-1b,OsCYP18-1, OsCYP-12,OsCYP18-4, OsCYP-26, OsCYP18-3,OsCYP17, OsCYP-4,OsCYP21-1, OsCYP-24,OsCYP28, OsCYP-21, OsCYP28a, OsCYP28b, OsCYP28c, OsCYP28d,OsCYP59b, OsCYP-15, OsCYP59-2,OsCYP71, OsWD40-164, OsCYP-22, OsCYP71a, OsCYP71b,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
41077	25547963	Khare T., Kumar V., Kishor P.B.	Na(+) and Cl(-) ions show additive effects under NaCl stress on induction of oxidative stress and the responsive antioxidative defense in rice.	Protoplasma			2014	_,CATA,SODCC2	OsPRX1, POX1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2
41078	25267613	An J.H., Goo E., Kim H., Seo Y.S., Hwang I.	Bacterial quorum sensing and metabolic slowing in a cooperative population.	Proc. Natl. Acad. Sci. U.S.A.	111(41)	14912-7	2014		
41079	25271318	Wang Z., Ruan W., Shi J., Zhang L., Xiang D., Yang C., Li C., Wu Z., Liu Y., Yu Y., Shou H., Mo X., Mao C., Wu P.	Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner.	Proc. Natl. Acad. Sci. U.S.A.	111(41)	14953-8	2014	PHR2,_,_	OsPHR2, Os-PHR2,OsSPX1, SPX1,OsSPX2, SPX2
41080	25186728	Chen X., Cui Z., Fan M., Vitousek P., Zhao M., Ma W., Wang Z., Zhang W., Yan X., Yang J., Deng X., Gao Q., Zhang Q., Guo S., Ren J., Li S., Ye Y., Wang Z., Huang J., Tang Q., Sun Y., Peng X., Zhang J., He M., Zhu Y., Xue J., Wang G., Wu L., An N., Wu L., Ma L., Zhang W., Zhang F.	Producing more grain with lower environmental costs.	Nature	514(7523)	486-9	2014		
41081	25212867	Le Thi H., Lin C.H., Smeda R.J., Leigh N.D., Wycoff W.G., Fritschi F.B.	Isolation and identification of an allelopathic phenylethylamine in rice.	Phytochemistry			2014		
41082	25253891	AbouHaidar MG., Venkataraman S., Golshani A., Liu B., Ahmad T.	Novel coding, translation, and gene expression of a replicating covalently closed circular RNA of 220 nt.	Proc. Natl. Acad. Sci. U.S.A.	111(40)	14542-7	2014		
41083	25162803	Purugganan M.D.	An evolutionary genomic tale of two rice species.	Nat. Genet.	46(9)	931-2	2014	SH1,SE1,qSH1,SH4,RC,DEP1,SD1	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,qSH1, qsh1, qSH-1,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
41084	25218040	Cho H.Y., Lee C., Hwang S.G., Park Y.C., Lim H.L., Jang C.S.	Overexpression of the OsChI1 gene, encoding a putative laccase precursor, increases tolerance to drought and salinity stress in transgenic Arabidopsis.	Gene	552(1)	98-105	2014	LAC15,LAC2,LAC5,LAC9,LAC10,LAC21,LAC26,LAC27,LAC3,LAC8,LAC18,LAC4,LAC25,LAC1,LAC19,LAC14,LAC12	OsLAC, OsLAC15, OsLAC13, LAC13 ,OsLAC2,OsLAC5,OsLAC9,OsLAC10,OsLAC21,OsLAC26,OsLAC27,OsChI1, ChI1, OsLAC3,OsLAC8, OsLAC7, LAC7,OsLAC18,Oslacc, lacc, OsLAC4,OsLAC25,OsLAC1 ,OsLAC19,OsLAC14, OsLAC13, LAC13,OsLAC12
41085	25236158	Wang L., Yu C., Chen C., He C., Zhu Y., Huang W.	Identification of rice Di19 family reveals OsDi19-4 involved in drought resistance.	Plant Cell Rep.			2014	_,_,CATA,SODCC1,_,_,_,_,_,SODCC2	OsDi19-6,OsDi19-4, Di19-4,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsDi19-2,OsDi19-3,OsDi19-1,OsDi19-5,OsDi19-7,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2
41086	25309566	Fujino K., Obara M., Sato K.	Diversification of the plant-specific hybrid glycine-rich protein (HyGRP) genes in cereals.	Front Plant Sci	5	489	2014	_,_,_,_,_,_,qLTG-3-1(t),_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsHyPRP07, HyP/GRP07, OsHyPRP7, HyP/GRP7,RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3,OsHyPRP06, HyP/GRP06, OsHyPRP6, HyP/GRP6,OsHyPRP17, HyP/GRP17,OsHyPRP14, HyP/GRP14,OsHyPRP11, HyP/GRP11,qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5,OsHyPRP10, HyP/GRP10,OsHyPRP18, HyP/GRP18,OsHyPRP19, HyP/GRP19,OsHyPRP20, HyP/GRP20,OsHyPRP15, HyP/GRP15,OsHyPRP02, HyP/GRP02, OsHyPRP2, HyP/GRP2,OsHyPRP04, HyP/GRP04, OsHyPRP4, HyP/GRP4,OsHyPRP09, HyP/GRP09, OsHyPRP9, HyP/GRP9,OsHyPRP12, HyP/GRP12,OsHyPRP16, HyP/GRP16,RCc2, RCg2, OsHyPRP13, HyP/GRP13, OsRCg2,OsHyPRP21, HyP/GRP21,OsHyPRP03, HyP/GRP03, OsHyPRP3, HyP/GRP3, LTP1,OsHyPRP08, HyP/GRP08, OsHyPRP8, HyP/GRP8
41087	25209128	Peng B., Kong H., Li Y., Wang L., Zhong M., Sun L., Gao G., Zhang Q., Luo L., Wang G., Xie W., Chen J., Yao W., Peng Y., Lei L., Lian X., Xiao J., Xu C., Li X., He Y.	OsAAP6 functions as an important regulator of grain protein content and nutritional quality in rice.	Nat Commun	5	4847	2014	_	OsAAP10D, AAP10D, OsAAP6, AAP6, qPC1
41088	25238655	H?ller S., Meyer A., Frei M.	Zinc deficiency differentially affects redox homeostasis of rice genotypes contrasting in ascorbate level.	J. Plant Physiol.	171(18)	1748-1756	2014	_	OsGME1, GME1
41089	24964058	Kouzai Y., Mochizuki S., Nakajima K., Desaki Y., Hayafune M., Miyazaki H., Yokotani N., Ozawa K., Minami E., Kaku H., Shibuya N., Nishizawa Y.	Targeted gene disruption of OsCERK1 reveals its indispensable role in chitin perception and involvement in the peptidoglycan response and immunity in rice.	Mol. Plant Microbe Interact.	27(9)	975-82	2014	_,_,CEBiP,_	LYP6, Os-LYP6, OsLYP6,LYP4, Os-LYP4, OsLYP4,CEBIP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9
41090	25184028	Sahoo R.K., Ansari M.W., Tuteja R., Tuteja N.	OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity.	Rice (N Y)	7(1)	17	2014	_	OsSUV3, SUV3
41091	25255828	Xu F., Fang J., Ou S., Gao S., Zhang F., DU L., Xiao Y., Wang H., Sun X., Chu J., Wang G., Chu C.	Variations in CYP78A13 coding region influence grain size and yield in rice.	Plant Cell Environ.			2014	CYCA3;2,CYCA2;1,MCM4,_,_,_,CYCD4;1,GE1,CYCB2;1,CYCB2;2,_,MCM3,CYCA1;1,_,CDKB2;1 ,GH3-8,GL3.2	CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,OsMCM4,KN, OsKN, OsSYP111, SYP111,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,MAPK,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES,cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, CycB2;os;1, OsCycB2;1,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,MAD2, OsMAD2,OsMCM3,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,H1, OsH1,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,GL3.2
41092	25255693	Cheng Q., Zhou Y., Liu Z., Zhang L., Song G., Guo Z., Wang W., Qu X., Zhu Y., Yang D.	An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced UNFOLDED PROTEIN RESPONSE in rice.	Plant Biol (Stuttg)			2014	_,BZIP50,HSFA2D,IRE1,BZIP60,BZIP39	OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b ,IRE1, OsIRE1, OsIre1,OsbZIP60, bZIP60,OsbZIP39, bZIP39
41093	25261533	Sumiyoshi M., Inamura T., Nakamura A., Aohara T., Ishii T., Satoh S., Iwai H.	UDP-arabinopyranose Mutase 3 is Required for pollen Wall Morphogenesis in Rice (Oryza sativa).	Plant Cell Physiol.			2014	UAM1,UAM3,UAM2	OsUAM1, RGP-1, Osgls1,OsUAM3,OsUAM2
41094	25259844	Nuruzzaman M., Kanno T., Amada R., Habu Y., Kasajima I., Ishikawa T., Kawai-Yamada M., Uchimiya H.	Does the Upstream Region Possessing MULE-Like Sequence in Rice Upregulate PsbS1 Gene Expression?	PLoS ONE	9(9)	e102742	2014	_,PSBS1,_,_,_,_,_,_,_,_	OsMULE-JS4,OsPsbS1, PsbS1, psbS,OsMULE-IS8,OsMULE-IS9,OsMULE-JS2,OsMULE-JS5,OsMULE-JS3,OsMULE-IS7,OsMULE-IS6,OsMULE-JSS1
41095	25124817	Hayashi G., Shibato J., Imanaka T., Cho K., Kubo A., Kikuchi S., Satoh K., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Fukumoto M., Rakwal R.	Unraveling low-level gamma radiation--responsive changes in expression of early and late genes in leaves of rice seedlings at litate Village, Fukushima.	J. Hered.	105(5)	723-38	2014	RPA1A,_,_,ORC1,CHS,POX22.3,RBCL,FEN1,_,_,RPA1,_,PAL1,CATA,_,_,APX1,_,APX2,_,ERF53,_,GPX1,PR10A	OsRPA70a, OsRPA1a, RPA1a,OsRD22, RD22, OsBURP16, BURP16,RbcS3, OsRBCS3, OsRbcS3, rbcS ,OsORC1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,rbcL, rbcA, OsrbcL,OsFEN1, OsFEN-1a, FEN-1,,OsPR2, Gns1, OsEGL1,OsRPA1, OsRPA70b, RPA70b,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsPCNA, PCNA,qUVR-10, OsPHR, OsCPD, CPD,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsRPA32, RPA32, RPA2A ,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,CSB, OsCBS,OsERF#053, OsERF053, OsERF53, AP2/EREBP#134, AP2/EREBP134,OsPR1b, PR1b,OsGpx1, GPX1, OsGPx01, OsGPX1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
41096	25266270	Zuo S., Zhou X., Chen M., Zhang S., Schwessinger B., Ruan D., Yuan C., Wang J., Chen X., Ronald P.C.	OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae.	J Integr Plant Biol			2014	XA21,_,_,D61	Xa21*, Xa21, OsXA21,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
41097	25042706	Jha Y., Sablok G., Subbarao N., Sudhakar R., Fazil M.H., Subramanian R.B., Squartini A., Kumar S.	Bacterial-induced expression of RAB18 protein in Orzya sativa salinity stress and insights into molecular interaction with GTP ligand.	J. Mol. Recognit.	27(9)	521-7	2014	_,_	RAB18,OsRab18B2, Q10RT8
41098	25209982	Ramegowda V., Basu S., Krishnan A., Pereira A.	Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and grain yield under Normal and Drought Stress Conditions.	Plant Physiol.	166(3)	1634-45	2014	STR6,_,ERF3,_,_,RLCK103,_	OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,RcbX, RbcX,Dfu584, Duf584, OsS40-1, S40-1 ,GUDK, OsRLCK103,OsHCI1, E3UL
41099	25203424	Wang Q., Liu Y., He J., Zheng X., Hu J., Liu Y., Dai H., Zhang Y., Wang B., Wu W., Gao H., Zhang Y., Tao X., Deng H., Yuan D., Jiang L., Zhang X., Guo X., Cheng X., Wu C., Wang H., Yuan L., Wan J.	STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus.	Nat Commun	5	4768	2014	_	STV11, OsSOT1
41100	25189534	Hufnagel B., de Sousa SM., Assis L., Guimaraes C.T., Leiser W., Azevedo G.C., Negri B., Larson B.G., Shaff J.E., Pastina M.M., Barros B.A., Weltzien E., Rattunde H.F., Viana J.H., Clark R.T., Falc?o A., Gazaffi R., Garcia A.A., Schaffert R.E., Kochian L.V., Magalhaes J.V.	Duplicate and Conquer: Multiple Homologs of PHOSPHORUS-STARVATION TOLERANCE1 Enhance Phosphorus Acquisition and Sorghum Performance on Low-Phosphorus Soils.	Plant Physiol.	166(2)	659-77	2014		
41101	25236969	Li L., Li Y., Song S., Deng H., Li N., Fu X., Chen G., Yuan L.	An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.	Planta			2014	TDR,_	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsFbox509, Os_F0258, OsADF, ADF
41102	0	Abe S.a, Sado A.b, Tanaka K.c, Kisugi T.c, Asami K.c, Ota S.c, Il Kim H.d, Yoneyama K.e, Xie X.a d e, Ohnishi T.f g, Seto Y.c, Yamaguchi S.c, Akiyama K.b, Yoneyama K.a d e, Nomura T.a d e	Carlactone is converted to carlactonoic acid by MAX1 in Arabidopsis and its methyl ester can directly interact with AtD14 in vitro	Proc. Natl. Acad. Sci. U.S.A.	111	18084-18089	2014		
41103	0	Pariasca-Tanaka J.a, Lorieux M.b, He C.c, McCouch S.d, Thomson M.J.e, Wissuwa M.a	Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses	Euphytica	201	67-78	2014		
41104	0	Dietrich M.R.a, Ankeny R.A.b, Chen P.M.a	Publication trends in model organism research	Genetics	198	787-794	2014		
41105	25371548	Tong H.a, Xiao Y.a, Liu D.a, Gao S.a, Liu L.a, Yin Y.b, Jin Y.c, Qian Q.d, Chu C.a	Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in ricec w open	Plant Cell	26	4376-4393	2014	SD1,SLR1,D2,_,GA2OX3,D61,BZR1,D18,GA20OX1,EUI1,BRD1,DLT,D35,GID1,GID2,D11	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsBZR1, Os BZR1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,gid1, OsGID1, Thl, Os GID1,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
41106	0	Chen S.a b c, Su J.b c, Han J.b c, Wang W.b c, Wang C.b c, Yang J.b c, Zeng L.b c, Wang X.a, Zhu X.b c, Yang C.a	Resistance spectrum assay and fine mapping of the blast resistance gene from a rice experimental line, IRBLta2-Re	Euphytica	195	209-216	2014	PITA,_	Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pita3(t)
41107	0	Li C.a, Dai Y.b d, Zhang S.X.c, Duan Y.H.b d, Liu M.L.b d, Chen L.Y.b d, Yao X.S.a d b d	Quinoid glycosides from Forsythia suspensa	Phytochemistry	104	105-113	2014		
41108	24211387	Shang Y.a, Zhang N.a, Zhu P.a, Luo Y.b, Huang K.a b, Tian W.b, Xu W.a b	Restriction enzyme cutting site distribution regularity for DNA looping technology	Gene	534	222-228	2014		
41109	0	Liang J.L.a b, Qu Y.P.b, Yang C.G.c, Ma X.D.b, Cao G.L.b, Zhao Z.W.a, Zhang S.Y.c, Zhang T.a, Han L.Z.b	Identification of QTLs associated with salt or alkaline tolerance at the seedling stage in rice under salt or alkaline stress	Euphytica	201	441-452	2014		
41110	0	Du H.a b, Huang M.b, Zhang Z.c, Cheng S.a	Genome-wide analysis of the AP2/ERF gene family in maize waterlogging stress response	Euphytica	198	115-126	2014		
41111	0	Han J.a, Li A.a, Liu H.b, Wen X.a, Zhao M.b, Korir N.B.a, Korir N.K.c, Wang C.a, Fang J.a	Computational identification of microRNAs in the strawberry (Fragaria~ananassa) genome sequence and validation of their precise sequences by miR-RACE	Gene	536	151-162	2014		
41112	0	Zhang F.a, Cui F.a, Zhang L.a, Wen X.a, Luo X.a, Zhou Y.a, Li X.b, Wan Y.b, Zhang J.a, Xie J.a	Development and identification of a introgression line with strong drought resistance at seedling stage derived from Oryza Sativa L. Mating with Oryza rufipogon Griff	Euphytica	200	1-7	2014		
41113	0	Zheng H., Zhao H., Liu H., Wang J., Zou D.	QTL analysis of Na+ and K+ concentrations in shoots and roots under NaCl stress based on linkage and association analysis in japonica rice	Euphytica	201	109-121	2014		
41114	0	Leng Y.a, Xue D.b, Yang Y.a, Hu S.a, Su Y.a, Huang L.a, Wang L.a, Zheng T.a, Zhang G.a, Hu J.a, Gao Z.a, Guo L.a, Qian Q.a, Zeng D.a	Mapping of QTLs for eating and cooking quality-related traits in rice (Oryza sativa L.)	Euphytica	197	99-108	2014		
41115	0	Qiu Y.a b, Guo J.a, Jing S.a, Zhu L.a, He G.a	Fine mapping of the rice brown planthopper resistance gene bph7 and characterization of its resistance in the 93-11 background	Euphytica	198	369-379	2014	BPH7	bph7
41116	0	Marathi B., Ramos J., Hechanova S.L., Oane R.H., Jena K.K.	SNP genotyping and characterization of pistil traits revealing a distinct phylogenetic relationship among the species of Oryza	Euphytica	201	131-148	2014		
41117	24569770	Lin C.R.a b, Lee K.W.b, Chen C.Y.b, Hong Y.F.b, Chen J.L.b, Lu C.A.c, Chen K.T.b, David Ho T.H.d e f, Yu S.M.a b e f	SnRK1A-interacting negative regulators modulate the nutrient starvation signaling sensor SnRK1 in source-sink communication in cereal seedlings under abiotic stress	Plant Cell	26	808-827	2014	SKIN2,OSK1,SKIN1,_	OsSKIN2, OsO3L9, O3L9,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a,OsSKIN1, OsO3L8, O3L8,OsMYBS1, MYBS1, Os-MYBS1, Mybs1
41118	0	Marathi B., Jena K.K.	Floral traits to enhance outcrossing for higher hybrid seed production in rice: present status and future prospects	Euphytica	201	1-14	2014	WDA1,UDT1,MADS13,AID1,MADS58,TDR,MADS24,CP1,LHS1,MFO1,MADS2,SPW1,DL,RAG,RAP1A,MADS7,CYP704B2,MADS4	OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsMADS13, MAF1, RMADS206,aid1, OsAID1,OsMADS58,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsCP1, Os CP1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsMADS6, MADS6, OsMFO1,OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,SPW1, spw1, MADS16, OsMADS16,DL, dl(lop), lop, dl, dl1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsCYP704B2,OsMADS4, PI1
41119	0	Zhou W., Malabanan P.B., Abrigo E.	OsHox4 regulates GA signaling by interacting with DELLA-like genes and GA oxidase genes in rice	Euphytica	201	97-107	2014	GRAS19,HOX4,SCR1,GRAS17,SLRL1,SLR1,GA2OX2,SBI,D18,GA2OX6,GA2OX8,GA2OX5,GA3OX1,GA2OX3,GA2OX9	OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19,Oshox4, OsHox4,OsSCR1, OsSCR, OsGRAS-41, OsGRAS41, GRAS-41, GRAS41,OsSCL14, SCL14, OsGRAS-17, OsGRAS17, GRAS-17,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsGA2ox2, ga2ox 2, OsGA2ox-2,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsGA2ox6,OsGA2ox8,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,OsGA3ox1, GA3ox1, OsGA3OX1,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35
41120	0	Kobayashi T.a b, Nakanishi Itai R.c, Nishizawa N.K.b	Iron deficiency responses in rice roots	Rice	7		2014	_,DMAS1,_,NRAMP1,_,IDEF1,TOM1,NAS2,_,YSL2,_,NAS1,IRT2,YSL15,NAAT1,_,_,NAC36,IRT1,_	OsbHLH133, bHLH133, OsRSL8, RSL8,OsDMAS1,OsRFPH2-24, OsHRZ2, HRZ2,OsNramp1, OsNRAMP1, OsNramp6,PEZ2,OsLFL2, LFL2, OsIDEF1,OsTOM1, ZIFL4, OsZIFL4 ,OsNAS2,OsFRDL1, FRDL1,OsYSL2, Os-YSL2, OsYs6 ,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS1,OsIRT2, OsIRT1,OsYSL15, OsYs7,OsNAAT1,OsHRZ1, HRZ1,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,OsIRT1,PEZ1, OsPEZ1
41121	0	Hara Y.a, Yokoyama R.a, Osakabe K.b, Toki S.c, Nishitani K.a	Function of xyloglucan endotransglucosylase/hydrolases in rice	Ann. Bot.	114	1309-1318	2014	XTH11,XTH19,XTH20	OsXTH11, XTR2, OsXTR2, Meri-5,OsXTH19,OsXTH20, XET32
41122	0	Scalera V.a, Gena P.a, Mastrodonato M.b, Kitagawa Y.c, Carulli S.a, Svelto M.a, Calamita G.a d	Functional reconstitution of a rice aquaporin water channel, PIP1;1, by a micro-batchwise methodology	Plant Physiology and Biochemistry	85	78-84	2014	PIP1A	OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
41123	0	Zeng D.E.a b, Hou P.a, Xiao F.c, Liu Y.a d	Overexpressing a novel RING-H2 finger protein gene, OsRHP1, enhances drought and salt tolerance in rice (Oryza sativa L.)	Journal of Plant Biology	57	357-365	2014	ABA1,BZIP46,_,LEA3-1,NCED1	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsRHP1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 
41124	0	Kumar M.a, Lee S.C.a, Kim J.Y.a, Kim S.J.a, Aye S.S.b, Kim S.R.a	Over-expression of dehydrin gene, OsDhn1, improves drought and salt stress tolerance through scavenging of reactive oxygen species in rice (Oryza sativa L.)	Journal of Plant Biology	57	383-393	2014	DHN1	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23
41125	0	Wu J.a d, Lee D.Y.b, Wang Y.a d, Kim S.T.c, Baek S.B.e, Kim S.G.e, Kang K.Y.a b	Protein profiles secreted from phylloplane of rice leaves free from cytosolic proteins: Application to study rice-Magnaporthe Oryzae interactions	Physiol. Mol. Plant Pathol.	88	28-35	2014	_,_,_,_,POXN,_,_,_,_,PME7,ALPHACA3,GLP4-1,RMC,CHT1,POX22.3,_,_,_,_,_,_,_,_,_,_,_	PR1b,prx117,,,poxN, prx38, prxRPN, RPN, poxN/PRX38,alphaGa1, alpha-Gal I,,OsPR2, Gns1, OsEGL1,,OsPME7,OsalphaCA3, alphaCA3,OsGLP4-1,OsRMC, OsRLK, OsDUF26, DUF26,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,prx131,Gns10,,,,OsSub30, SUB30,OsARAF3,,,,
41126	0	Giong H.K.a b, Moon S.a b, Jung K.H.a b	A systematic view of the rice calcineurin B-like protein interacting protein kinase family	Genes and Genomics	37	55-68	2014		
41127	0	Wang Y., Ma N., Qiu S., Zou H., Zang G., Kang Z., Wang G., Huang J.	Regulation of the alpha-expansin gene OsEXPA8 expression affects root system architecture in transgenic rice plants	Molecular Breeding	34	47-57	2014	EXPA8	OsEXPA8, OsEXP8, osaEXPa1.17
41128	0	Qiu S., Ma N., Che S., Wang Y., Peng X., Zhang G., Wang G., Huang J.	Repression of OsEXPA3 expression leads to root system growth suppression in rice	Crop Sci.	54	2201-2213	2014	EXPA3	OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3
41129	0	Xu G., Cui Y., Wang M., Li M., Yin X., Xia X.	OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis	Molecular Breeding	34	1055-1064	2014	_	OsFbox396, Os_F0578, OsMsr9
41130	0	Yan B., Tondi Yacouba N., Chen J., Wang Y., Gao G., Zhang Q., Liu X., He Y.	Analysis of minor quantitative trait loci for eating and cooking quality traits in rice using a recombinant inbred line population derived from two indica cultivars with similar amylose content	Molecular Breeding	34	2151-2163	2014		
41131	0	Chen M.a b, Chen J.a b c, Fang J.a b, Guo Z.a b, Lu S.a b	Down-regulation of S-adenosylmethionine decarboxylase genes results in reduced plant length, pollen viability, and abiotic stress tolerance	Plant Cell Tissue Organ Cult.	116	311-322	2014	SAMDC2,_,SAMDC	SamDC2, AdoMetDC2, OsSAMDC2,SAMDC1, SAMDC, OsSAMDC4,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1
41132	0	Liu H.a b, Ma Y.a b, Chen N.a b, Guo S.a b, Liu H.a, Guo X.a b, Chong K.a, Xu Y.a	Overexpression of stress-inducible OsBURP16, the beta subunit of polygalacturonase 1, decreases pectin content and cell adhesion and increases abiotic stress sensitivity in rice	Plant, Cell and Environment	37	1144-1158	2014		
41133	0	Ke Y.G.a b, Yang Z.J.a, Yu S.W.b, Li T.F.b, Wu J.H.b, Gao H.b, Fu Y.P.c, Luo L.J.a b	Characterization of OsDREB6 responsive to osmotic and cold stresses in rice	Journal of Plant Biology	57	150-161	2014	_,BZIP23,OSBZ8,_,DREB1B,SOS1,NHX1,P5CS,_,ERF50	OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsBZ8, OsbZIP05,OsMYB2, MYB2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsSOS1, OsNHA1,OsNHX1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsERF#050, OsERF050, OsERF50, AP2/EREBP#113, AP2/EREBP113, OsDREB6
41134	0	Yu J.a, Li Y.a, Tang W.a b, Liu J.b, Lu B.R.c, Liu Y.a b	The Accumulation of Glycine Betaine Is Dependent on choline monooxygenase (OsCMO), Not on Phosphoethanolamine N-methyltransferase (OsPEAMT1), in Rice (Oryza sativa L. ssp. japonica)	Plant Molecular Biology Reporter	32	916-922	2014	_,_,_	OsPEAMT2,OsCMO,OsPEAMT1
41135	0	Zhou J.a b, Liu Q.a c, Zhang F.d, Wang Y.a b, Zhang S.a b, Cheng H.a, Yan L.a, Li L.a, Chen F.d, Xie X.a b c	Overexpression of OsPIL15, a Phytochrome-interacting factor-like protein gene, represses etiolated seedling growth in rice	J Integr Plant Biol	56	373-387	2014	PIL15	OsPIL15, OsbHLH105, PIF3, OsPIF3
41136	0	Yang B.a, Wang X.M.a, Ma H.Y.a, Jia Y.a, Li X.b, Dai C.C.a	Effects of the fungal endophyte Phomopsis liquidambari on nitrogen uptake and metabolism in rice	Plant Growth Regul.	73	165-179	2014	GLN1;1,AMT3;3,AMT1;1,AMT3;2,AMT3;1,GLT1,_,NRT2.3,GS2,AMT1;2	OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsAMT3;3, AMT3;3, OsAMT3.3,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,AMT3;2, OsAMT3;2, OsAMT3.2,OsAMT3;1, AMT3-1, OsAMT3.1, OsAMT2;2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,OsNR1, NR1, nia1, OsNIA1, NIA1,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsGS2, GLN2, RGS31,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
41137	0	You J., Zong W., Hu H., Li X., Xiao J., Xiong L.	A STRESS-RESPONSIVE NAC1-regulated protein phosphatase gene rice Protein Phosphatase18 modulates drought and oxidative stress tolerance through abscisic acid-independent reactive oxygen species scavenging in rice	Plant Physiol.	166	2100-2114	2014	_,_	OsPP2C10, PP2C10, OsPP18,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1
41138	0	Xu H.W.a, Mo Y.W.b, Wang W.c, Wang H.b, Wang Z.d	OsPIN1a gene participates in Regulating negative phototropism of rice riceoots	Rice Science	21	83-89	2014	PIN1B	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
41139	0	Zhao S.P.a b, Ye X.Z.a, Shi W.M.c	Expression of OsAMT1 (1.1-1.3) in rice varieties differing in nitrogen accumulation	Russian Journal of Plant Physiology	61	707-713	2014	AMT1;1,AMT1;2,AMT1;3	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
41140	0	Li W.X.a, Huang J.Z.a, Zhao H.J.a, Tan Y.Y.a, Cui H.R.a, Poirier Y.b, Shu Q.Y.a	Production of low phytic acid rice by hairpin RNA- and artificial microRNA-mediated silencing of OsMIK in seeds	Plant Cell Tissue Organ Cult.	119	15-25	2014	_	OsMIK, LPA
41141	0	Sun L.J.a, Huang L.b, Li D.Y.b, Zhang H.J.b, Song F.M.b	Comprehensive expression analysis suggests overlapping of rice OsWRKY transcription factor genes during abiotic stress responses	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	1651-1658	2014	WRKY7,WRKY4,WRKY45,WRKY111,WRKY23,WRKY95,WRKY64,WRKY28,WRKY42,WRKY35,WRKY8,WRKY89,WRKY3,WRKY6,WRKY16,WRKY21,WRKY26,WRKY24,WRKY30,WRKY2,WRKY70,WRKY113,WRKY61,WRKY53,WRKY109,WRKY36,WRKY67,WRKY10,WRKY71,WRKY77,WRKY43,WRKY108,WRKY54,WRKY115,WRKY75,WRKY73,WRKY62,WRKY66,WRKY65,WRKY40,WRKY52,WRKY27,WRKY47,WRKY1,WRKY19,WRKY22,WRKY15,WRKY82,WRKY11,WRKY74,WRKY79,WRKY116,WRKY72,WRKY20	OsWRKY7,OsWRKY4, WRKY122, OsWRKY122,OsWRKY45,OsWRKY111,OsWRKY23,OsWRKY95,OsWRKY64,OsWRKY28,OsWRKY42, WRKY-42,OsWRKY35,OsWRKY8,OsWRKY89,OsWRKY3 ,OsWRKY6, WRKY-6,OsWRKY16,OsWRKY21,OsWRKY26, OsWRKY59,OsWRKY24,OsWRKY30,OsWRKY2,OsWRKY70,OsWRKY113,OsWRKY61, OsWRKY103, WRKY103,OsWRKY53, WRKY-53,OsWRKY109,OsWRKY36,OsWRKY67,OsWRKY10,OsWRKY71, WRKY-71,OsWRKY77, WRKY-77,OsWRKY43,OsWRKY108,OsWRKY54,OsWRKY115,OsWRKY75,OsWRKY73,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY66,OsWRKY65,OsWRKY40,OsWRKY52,OsWRKY27,OsWRKY47,OsWRKY1, OsWRKY1v2,OsWRKY19,OsWRKY22,OsWRKY15,OsWRKY82,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY74,OsWRKY79, WRKY-79,OsWRKY116,OsWRKY72, WRKY-72,OsWRKY20
41142	0	Zhang X.a, Tang W.a, Liu J.b, Liu Y.a b	Co-expression of rice OsP5CS1 and OsP5CS2 genes in transgenic tobacco resulted in elevated proline biosynthesis and enhanced abiotic stress tolerance	Chinese Journal of Applied and Environmental Biology	20	717-722	2014	P5CS,_	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,P5CS2, OsP5CS2, OsALDH18B2, ALDH18B2 
41143	0	Teng K., Li J., Liu L., Han Y., Du Y., Zhang J., Sun H., Zhao Q.	Exogenous ABA induces drought tolerance in upland rice: The role of chloroplast and ABA biosynthesis-related gene expression on photosystem II during PEG stress	Acta Physiologiae Plantarum	36	2219-2227	2014	PSBA,NCED1,PSBD,ABA1,NCED2,NCED2,NCED3	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,psbD, D2, OsPsbD1, OsPsbD2,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsNCED2, OsNced2, OsCCD4b, CCD4b,OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2
41144	0	Ni J.a b, Zhu Z.b c, Wang G.c, Shen Y.a, Zhang Y.a, Wu P.b	Intragenic suppressor of Osiaa23 revealed a conserved Tryptophan residue crucial for protein-protein interactions	PLoS ONE	9		2014	ARF16,ARF6A,ARF8,ARF6B,IAA23,ARF17	OsARF16,OsARF6a, OsARF6, ARF6,OsARF8, OsARF12, ARF12,OsARF6b, OsARF25, ARF25,OsIAA23,OsARF17
41145	0	Wu J.a, Zhu C.a, Pang J.a, Zhang X.a, Yang C.a, Xia G.a, Tian Y.a, He C.a b	OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa	Plant Journal	80	1118-1130	2014		
41146	0	Zhao F.Y.a, Han M.M.a, Zhang S.Y.b, Ren J.a, Hu F.a, Wang X.a	MAPKs as a cross point in H2O2 and auxin signaling under combined cadmium and zinc stress in rice roots	Russian Journal of Plant Physiology	61	608-618	2014	MPK7,PIN10B,ZIP7,IAA12,YUCCA1,YUCCA3,ARF20,IAA15,ARF7B,ARF7,IAA9,ARF6B,HMA4,BIF2,ARF22,MSRMK2,MAPK4,ARF13,IAA30,PIN1C,YUCCA2,ARF16,_,HMA5,HMA2,ZIP8,ZIP6,BWMK1,PIN5A,PIN5B	OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,PIN3B, OsPIN3b, OsPIN10b,OsZIP7,OsIAA12,OsYUCCA1, OsYUC1,OsYUCCA3, OsYUC3,OsARF20,OsIAA15,OsARF7b, OsARF21,OsARF7,OsIAA9, OsIAA2,OsARF6b, OsARF25, ARF25,OsHMA7, osHMA4, HMA7,bif2, Osbif2, OsBIF2, OsPID, PID,OsARF22,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsARF13, OsARF12,OsIAA30,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsYUCCA2, OsYUC2,OsARF16,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,OsHMA8, osHMA5, HMA8,OsHMA2, osHMA2, OsHMA2v ,OsZIP8, OsZIP1,OsZIP6,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,OsPIN5a,PIN5C, OsPIN5c, OsPIN5b
41147	0	Hu T.a b, Yang J.b, Yang Y.a, Wu Y.b	Molecular characterization, heterologous expression and resistance analysis of OsLEA3-1 from Oryza sativa	Biologia (Poland)	69	625-634	2014	LEA3-1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
41148	0	Xin Z., Wang Q., Yu Z., Hu L., Li J., Xiang C., Wang B., Lou Y.	Overexpression of a Xylanase Inhibitor Gene, OsHI-XIP, Enhances Resistance in Rice to Herbivores	Plant Molecular Biology Reporter	32	465-475	2014	_	DIP3, XIP, OsHI-XIP, OsXIP2, XIP2
41149	0	Sun L.a b c d, Zhang Q.e, Wu J.e, Zhang L.a b d, Jiao X.a b d, Zhang S.a b d, Zhang Z.e, Sun D.a b d, Lu T.e, Sun Y.a b d	Two rice authentic histidine phosphotransfer proteins, OsAHP1 and OsAHP2, mediate cytokinin signaling and stress responses in rice	Plant Physiol.	165	335-345	2014		
41150	0	Xu Q.a, Xu N.a, Xu H.a, Tang L.a, Liu J.a, Sun J.b, Wang J.a	Breeding value estimation of the application of IPA1 and DEP1 to improvement of Oryza sativa L. ssp. japonica in early hybrid generations	Molecular Breeding	34	1933-1942	2014		
41151	0	Imam J.a b, Mahto D.a, Mandal N.P.a, Maiti D.a, Shukla P.b, Variar M.a	Molecular Analysis of Indian Rice Germplasm Accessions with Resistance to Blast Pathogen	Journal of Crop Improvement	28	729-739	2014		
41152	0	Sudhalakshmi C., Krishnasamy R., Rajarajan A., Meena S.	Genotypic Divergence in Expression of Zinc-Deficiency Symptoms of Rice (Oryza sativa L.) in Sand Culture	Archives of Phytopathology and Plant Protection	48	2932-2948	2014		
41153	0	Maavimani M.a, Saraswathi R.b	Anther characteristics and spikelet fertility in rice (oryza sativa l.) under high temperature stress at anthesis	Indian Journal of Genetics and Plant Breeding	74	300-308	2014		
41154	0	Rajkhowa D.J.a, Mahanta K.b, Kumar M.a, Sarma A.K.a	Nitrogen mineralization from rice straw as influenced by organic and inorganic amendments in acid soil	Agrochimica	58	103-113	2014		
41155	0	Lata C.a b, Mishra A.K.c, Muthamilarasan M.c, Bonthala V.S.c, Khan Y.c, Prasad M.c	Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.)	PLoS ONE	9		2014		
41156	0	Roy B., Bhadra S.	Hydroponic screening for selection of aluminium tolerant rice (Oryza sativa L.) genotypes at seedlings stage using different indices	Cereal Res. Commun.	42	463-473	2014		
41157	0	Das S.S., Sanan-Mishra N.	A direct method for genetically transforming rice seeds modelled with FHVB2, a suppressor of RNAi	Plant Cell Tissue Organ Cult.	120	277-289	2014		
41158	0	Bhattacharya S.a, Chattopadhyaya B.a c, Koduru L.a d, Das N.a, Maiti M.K.a b	Heterologous expression of Brassica juncea microsomal omega-3 desaturase gene (BjFad3) improves the nutritionally desirable omega-6:omega-3 fatty acid ratio in rice bran oil	Plant Cell Tissue Organ Cult.	119	117-129	2014		
41159	0	Chakravarti S.Kr.a, Singh S.b, Kumar H.a	Studies on genetic parameters in induced micro-mutation population of aromatic rice (Oryza Sativa L.) in M2 and M3 generations	International Journal of Agricultural and Statistical Sciences	10	471-479	2014		
41160	0	Priyadarshini S.K.a, Raveendran M.b, Manonmani S.a, Robin S.a	Effect of QTLs controlling grain yield under drought stress in the genetic background of ADT45 rice variety	Indian Journal of Genetics and Plant Breeding	74	374-377	2014		
41161	0	Kumari M.a, Asthir B.a, Bains N.S.b	Temporal Dynamics of Antioxidant Defence System in Relation to Polyamine Catabolism in Rice under Direct-Seeded and Transplanted Conditions	Rice Science	21	343-353	2014		
41162	0	Shivani S.K.a, Kumar S.a, Elanchezhian R.b, Singh S.S.a, Bhatt B.P.a	Performance of rice (Oryza Sativa L.) Genotypes to submergence stress in rainfed lowland of eastern region	International Journal of Agricultural and Statistical Sciences	10	465-470	2014		
41163	0	Kumar S.a, Dwivedi S.K.a, Singh S.S.a, Jha S.K.b, S L.b, Elanchezhian R.c, Singh O.N.d, Bhatt B.P.a	Identification of drought tolerant rice genotypes by analysing drought tolerance indices and morpho-physiological traits	Sabrao Journal of Breeding and Genetics	46	217-230	2014		
41164	0	Kumar A.a b, Dwivedi S.a, Singh R.P.b, Chakrabarty D.a, Mallick S.a, Trivedi P.K.a, Adhikari B.c, Tripathi R.D.a	Evaluation of amino acid profile in contrasting arsenic accumulating rice genotypes under arsenic stress	Biol. Plant.	58	733-742	2014		
41165	0	Eram S.a, Singh A.K.a, Singh A.a, Singh N.K.b, Singh P.K.a	Physicochemical characterization and organoleptic analysis in rice cultivars	Indian Journal of Agricultural Research	48	437-445	2014		
41166	0	Parvathy R.a, Mohanlal S.a, Pushpan C.b, Helen A.b, Jayalekshmy A.a	Antioxidant properties, anti-inflammatory effects, and bioactive constituents of the Indian medicinal rice Njavara yellow compared with staple varieties	Food Sci. Biotechnol.	23	1379-1388	2014		
41167	0	Gautam P.a, Lal B.a, Raja R.a, Baig M.J.b, Haldar D.a, Rath L.a, Shahid M.a, Tripathi R.a, Mohanty S.a, Bhattacharyya P.a, Nayak A.K.a	Post-flood nitrogen and basal phosphorus management affects survival, metabolic changes and anti-oxidant enzyme activities of submerged rice (Oryza sativa)	Functional Plant Biology	41	1284-1294	2014		
41168	0	Roy P.S., Dash A.K., Subudhi H.N., Rao R.N., Rao G.J.N.	Molecular and morphological characterization of Indian rice hybrids	Aust J Crop Sci	8	1607-1614	2014		
41169	0	Krishnamurthy S.L.a, Sharma S.K.a, Kumar V.a, Tiwari S.b, Batra V.a, Singh N.K.b	Assessment of genetic diversity in rice genotypes for salinity tolerance using Saltol markers of Chromosome 1	Indian Journal of Genetics and Plant Breeding	74	243-247	2014		
41170	0	Kiranmayi S.L.a, Manorama K.a, Tripura Venkata V.G.N.b, Radhika K.a, Cheralu C.c, Roja V.a, Sarla N.b	Identification of markers associated with iron and zinc concentration in recombinant inbred lines of brown rice	Indian Journal of Genetics and Plant Breeding	74	423-429	2014		
41171	0	Dubey A.K.a, Pandian R.T.P.a, Rajashekara H.a, Singh V.K.a, Kumar G.a, Sharma P.a, Kumar A.a, Gopala Krishnan S.b, Singh A.K.b, Rathour R.c, Singh U.D.a	Phenotyping of improved rice lines and landraces for blast and sheath blight resistance	Indian Journal of Genetics and Plant Breeding	74	499-501	2014		
41172	0	Sharma N.a, Kaur R.b, Mangat G.S.a, Singh K.c	Red pericarp introgression lines derived from interspecific crosses of rice: Physicochemical characteristics, antioxidative properties and phenolic content	J. Sci. Food Agric.	94	2912-2920	2014		
41173	0	Verma S.K.a, Xalxo M.S.a, Saxena R.R.a, Verulkar S.B.b	Identification of QTLs for cold tolerance at seedling stage in rice (Oryza sativa L.)	Indian Journal of Genetics and Plant Breeding	74	86-89	2014		
41174	0	Naresh Babu N.a, Vinod K.K.b, Gopala Krishnan S.a, Bhowmick P.K.a, Vanaja T.c, Krishnamurthy S.L.c, Nagarajan M.b, Singh N.K.d, Prabhu K.V.a, Singh A.K.a	Marker based haplotype diversity of Salto/QTL in relation to seedling stage salinity tolerance in selected genotypes of rice	Indian Journal of Genetics and Plant Breeding	74	16-25	2014		
41175	0	Majhi B.B., Bhosale R., Jawkar S., Veluthambi K.	Evaluation of codA, tms2, and ABRIN-A as negative selectable markers in transgenic tobacco and rice	In Vitro Cellular and Developmental Biology - Plant	50	541-551	2014		
41176	0	Bose L.K.a, Jambhulkar N.N.b, Singh O.N.c	Additive main effects and multiplicative interaction (AMMI) analysis of grain yield stability in early duration rice	Journal of Animal and Plant Sciences	24	1885-1897	2014		
41177	0	Li J.a, Sun Y.b, Liu H.c d, Wang Y.b, Jia Yulin Y.e, Xu M.b	Natural variation of rice blast resistance gene Pi-d2	Genetics and Molecular Research	13	10582-10592	2014		
41178	0	Kim S.I.a c, Tai T.H.a b	Identification of novel rice low phytic acid mutations via TILLING by sequencing	Molecular Breeding	34	1717-1729	2014		
41179	0	Sung J.a, Kim B.K.b, Kim B.S.b, Kim Y.b	Mass spectrometry-based electric nose system for assessing rice quality during storage at different temperatures	J Stored Prod Res	59	204-208	2014		
41180	0	Phung T.H., Jung S.	Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen	Pestic Biochem Physiol	116	103-110	2014		
41181	0	Qin Y., Kweon S.J., Park S.Y., Lee J.H., Woo H.J., Shin K.S., Cho H.S., Park S.K., Lim M.H.	Little impacts on transcriptome and secondary metabolites of transgenic rice by resveratrol synthase gene	Plant OMICS	7	490-498	2014		
41182	0	Kim Y.S.a, Kim I.S.a, Choe Y.H.a, Bae M.J.a, Shin S.Y.a, Park S.K.b, Kang H.G.c, Kim Y.H.d, Yoon H.S.a	Overexpression of the Arabidopsis vacuolar H+-pyrophosphatase AVP1 gene in rice plants improves grain yield under paddy field conditions	Journal of Agricultural Science	152	941-953	2014		
41183	0	Joo J., Lee Y.H., Song S.I.	Rice CatA, CatB, and CatC are involved in environmental stress response, root growth, and photorespiration, respectively	Journal of Plant Biology	57	375-382	2014		
41184	0	Woo H.J.a, Sohn S.I.a, Shin K.S.a, Kim J.K.b, Kim B.G.a, Lim M.H.a	Expression of tobacco tocopherol cyclase in rice regulates antioxidative defense and drought tolerance	Plant Cell Tissue Organ Cult.	119	257-267	2014		
41185	0	Park S.Y.a, Kim J.K.b, Lee S.Y.a, Oh S.D.a, Lee S.M.a, Jang J.S.c, Yang C.I.d, Won Y.J.d, Yeo Y.a	Comparative analysis of phenolic acid profiles of rice grown under different regions using multivariate analysis	Plant OMICS	7	430-437	2014		
41186	0	Mendes C.A.a, Borba T.C.O.b, Bueno L.G.c, Cruzeiro G.A.V.d, Mendonca J.A.b, Pantaliao G.F.b, Vianello R.P.b, Brondani C.b	Association analysis for yield and its component traits in lines and cultivars of upland rice [Analise de associacao quanto a produtividade e seus caracteres componentes em linhagens e cultivares de arroz de terras altas]	Pesqui. Agropecu. Bras.	49	771-782	2014		
41187	0	Zanke C.D.a, Ling J.a, Plieske J.b, Kollers S.c, Ebmeyer E.c, Korzun V.c, Argillier O.d, Stiewe G.e, Hinze M.e, Neumann K.a, Ganal M.W.b, Roder M.S.a	Whole genome association mapping of plant height in winter wheat (Triticum aestivum L)	PLoS ONE	9		2014		
41188	0	Beutler A.N., Silva V.N., Deak E.A., Burg G.M., Schmidt M.R., Toebe M.	Zinc doses, sources and application times: Seed physiological potential and flooded rice yield	Aust J Crop Sci	8	1517-1525	2014		
41189	0	Perera U.I.P.a, Ratnasekera D.b, Senanayake S.G.J.N.b, Abeysiriwardena A.c	Genetic parameters and correlations of yield attributing characteristics of weedy rice in Sri Lanka	Journal of the National Science Foundation of Sri Lanka	42	299-306	2014		
41190	0	Ngu M.S.a, Thomson M.J.b, Bhuiyan M.A.R.a, Ho C.c, Wickneswari R.a	Fine mapping of a grain weight quantitative trait locus, qGW6, Using near isogenic lines derived from oryza rufipogon IRGC105491 and oryza sativa cultivar MR219	Genetics and Molecular Research	13	9477-9488	2014		
41191	0	Bargsten J.W.a c e, Severing E.I.b, Nap J.P.a c, Sanchez-Perez G.F.a d, van Dijk A.D.J.a f	Biological process annotation of proteins across the plant kingdom	Current Plant Biology	1	73-82	2014		
41192	0	Biswas S., Razzaque S., Elias S.M., Amin U.S.M., Haque T., Islam S.M.T., Lisa L.A., Naznin F., Rasul N.M., Seraj Z.I.	Effect of the vacuolar Na+/H+ antiporter transgene in a rice landrace and a commercial rice cultivar after its insertion by crossing	Acta Physiologiae Plantarum	37		2014		
41193	0	Contreras R., Figueiras A.M., Gallego F.J., Benito C.	Brachypodium distachyon: A model species for aluminium tolerance in Poaceae	Functional Plant Biology	41	1270-1283	2014		
41194	0	Bakhshi B.a, Salekdeh G.H.b, Bihamta M.R.c, Tohidfar M.d	Characterization of three key MicroRNAs in rice root architecture under drought stress using in silico analysis and quantitative real-time PCR	Biosciences Biotechnology Research Asia	11	555-565	2014		
41195	0	Hossain M.K.a, Tze O.S.b, Nadarajah K.b, Jena K.c, Bhuiyan M.A.R.a, Ratnam W.a	Identification and validation of sheath blight resistance in rice (Oryza sativa L.) cultivars against Rhizoctonia solani	Canadian Journal of Plant Pathology	36	482-490	2014		
41196	0	Machado A.C.Z.a, De Araujo Filho J.V.b	Host status and phenotypic diversity of rice cultivars resistant to Meloidogyne species under glasshouse conditions	Nematology	16	991-999	2014		
41197	0	Fujii S., Kazama T., Ito Y., Kojima S., Toriyama K.	A candidate factor that interacts with RF2, a restorer of fertility of Lead rice-type cytoplasmic male sterility in rice	Rice	7		2014		
41198	0	El-Hendawy S.a b, Al-Suhaibani N.a, Schmidhalter U.c, Sakagami J.I.d	Adaptive traits associated with tolerance to flash flooding during emergence and early seedling growth stages in rice	Plant OMICS	7	474-489	2014		
41199	0	Bhattacharya A., Mikkilineni V., Verma L., Palan B., Mali K., Char B.	Evaluation of doubled haploid culture conditions and regeneration of an indica rice hybrid	Indian Journal of Genetics and Plant Breeding	74	384-386	2014		
41200	0	Singh S.K., Katiyar T.P.S., Singh P., Singh A.K.	Evaluation of crop establishment methods and split application of nitrogen on yield attributes and yield of hybrid rice	Annals of Agri Bio Research	19	416-419	2014		
41201	0	Ingole K.D., Prashanthi S.K., Krishnaraj P.U.	Mining for major blast resistance genes in rice landraces of Karnataka	Indian Journal of Genetics and Plant Breeding	74	378-383	2014		
41202	0	Krishnamurthy S.L.a, Sharma S.K.a, Gautam R.K.b, Kumar V.a	Path and association analysis and stress indices for salinity tolerance traits in promising rice (Oryza sativa L.) genotypes	Cereal Res. Commun.	42	474-483	2014		
41203	0	Prakash M., Sathiya Narayanan G., Sunil Kumar B., Padmavathi S.	Effect of fly ash seed pelleting on growth, photosynthesis and yield in rice under aerobic condition	Indian Journal of Agricultural Research	48	465-471	2014		
41204	0	Shikari A.B.a, Rajashekara H.b, Khanna A.a, Gopala Krishnan S.a, Rathour R.c, Singh U.D.b, Sharma T.R.d, Prabhu K.V.a, Singh A.K.a	Identification and validation of rice blast resistance genes in Indian rice germplasm	Indian Journal of Genetics and Plant Breeding	74	286-299	2014		
41205	0	Gopikannan M., Ganesh S.K.	Genetic dissection of yield and yield components related to sodicity tolerance in rice (Oryza sativa L.)	Aust J Crop Sci	8	1571-1578	2014		
41206	0	Singh S.a, Jha V.B.a c, Singh R.N.a b, Akhauri R.K.a, Singh B.a c	Effect of different levels of sulphur on yield and yield attributes of mustard under different cropping systems	Ann Biol	30	464-465	2014		
41207	0	Pachauri V.a, Mishra V.a, Mishra P.a, Singh A.K.b, Singh S.b, Singh R.c, Singh N.K.a	Identification of candidate genes for rice grain aroma by combining QTL mapping and transcriptome profiling approaches	Cereal Res. Commun.	42	376-388	2014		
41208	0	Kumar J.a, Jain S.b, Jain R.K.a	Linkage mapping for grain iron and zinc content in F2population derived from the cross between PAU201 and Palman 579 in rice (Oryza sativa L.)	Cereal Res. Commun.	42	389-400	2014		
41209	0	Amin L.a, Azad M.A.K.a b, Ahmad Azlan N.A.a, Zulkifli F.a	Factors influencing stakeholders' attitudes toward cross-kingdom gene transfer in rice	New Genet Soc	33	370-399	2014		
41210	0	Usenbekov B.N.a, Kaykeev D.T.a, Yhanbirbaev E.A.a, Berkimbaj H.a, Tynybekov B.M.b, Satybaldiyeva G.K.b, Baimurzayev N.B.b, Issabayeva G.S.c	Doubled haploid production through culture of anthers in rice	Indian Journal of Genetics and Plant Breeding	74	90-92	2014		
41211	0	Beutler A.N.a, Giacomeli R.b, Alberto C.M.a, Silva V.N.a, da Silva Neto G.F.a, Machado G.A.a, Santos A.T.L.a	Soil hydric excess and soybean yield and development in Brazil	Aust J Crop Sci	8	1461-1466	2014		
41212	0	Nashta M.R., Shahpiri A.	Site-directed mutagenesis reveals that N-terminal cysteines are involved in dimerization of OsTrx20 and OsTrx23	Plant Systematics and Evolution	300	2199-2204	2014		
41213	0	Sun H.a b, Mao J.c, Lan B.d, Zhang C.c, Zhao C.c, Pan G.c, Pan X.b	Characterization and mapping of a spotted-leaf genotype, spl Y181 that confers blast susceptibility in rice	European Journal of Plant Pathology	140	407-417	2014		
41214	0	Zuo S., Zhang Y., Yin Y., Li G., Zhang G., Wang H., Chen Z., Pan X.	Fine-mapping of qSB-9 TQ, a gene conferring major quantitative resistance to rice sheath blight	Molecular Breeding	34	2191-2203	2014		
41215	0	Yang F.a, Chen Y.b, Tong C.b, Huang Y.b, Xu F.b, Li K.a, Corke H.a, Sun M.a, Bao J.b	Association mapping of starch physicochemical properties with starch synthesis-related gene markers in nonwaxy rice (Oryza sativa L.)	Molecular Breeding	34	1747-1763	2014		
41217	0	Chen G.a b, Luo S.a b, He H.a b, Zhang Z.a b, Li H.a b	Effect of perchlorate stress on the growth and development of rice and its nutrient uptake	Shengtai Xuebao/ Acta Ecologica Sinica	34	5460-5469	2014		
41218	0	Li W.a, Guo J.F.a, Yuan H.X.b, Li Y.R.c, Huang Y.X.a, Liu Y.L.a, Jiang S.H.a	Assessment on the ecological fitness of anti-fungal transgenic rice	Shengtai Xuebao/ Acta Ecologica Sinica	34	2581-2588	2014		
41219	24388908	Zhang W.a b c, Lin K.a b c, Zhou J.a b c, Zhang W.a b c, Liu L.a b c, Zhang Q.a b c	Cadmium accumulation, sub-cellular distribution and chemical forms in rice seedling in the presence of sulfur	Environ. Toxicol. Pharmacol.	37	348-353	2014		
41220	0	Liu H.M.a, Zhou X.Y.b, Li X.Z.a, Chen J.a, Wang W.F.a, Liu J.F.a, Xu Q.G.a	Heterosis analysis of chlorophyll fluorescence parameters in indica hybrid rice	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	855-860	2014		
41221	0	Zhang Y.H., Tang L., Liu X.J., Liu L.L., Cao W.X., Zhu Y.	Modeling dynamics of leaf color based on RGB value in rice	Journal of Integrative Agriculture	13	749-759	2014		
41222	0	Meng F.a b, Liu D.a, Yang X.a, Shohag M.J.I.a, Yang J.c, Li T.a, Lu L.a, Feng Y.a	Zinc uptake kinetics in the low and high-affinity systems of two contrasting rice genotypes	Journal of Plant Nutrition and Soil Science	177	412-420	2014		
41223	24741364	He H.a, Yang R.a, Jia B.a, Chen L.b, Fan H.a, Cui J.a, Yang D.a, Li M.a, Ma F.Y.a	Rice photosynthetic productivity and psii photochemistry under nonflooded irrigation	The Scientific World Journal	2014		2014		
41224	0	Song Z.Z.a b, Yang S.Y.b c, Zuo J.c d, Su Y.H.b	Over-expression of ApKUP3 enhances potassium nutrition and drought tolerance in transgenic rice	Biol. Plant.	58	649-658	2014		
41225	0	Yang Y.a, Xiao Z.a b, Liu H.a, Gao Y.a, Ye H.c, Wang Z.c	The research of passive effect for rice bran lipase by extruder	Journal of Chinese Institute of Food Science and Technology	14	90-99	2014		
41226	0	Yang X.a b, Tang X.a b, Wen X.a b, Li Y.a b, Zhou X.a	Effects of sowing date on 2-acetyl-1-pyrroline content and yield of late season aromatic rice	Shengtai Xuebao/ Acta Ecologica Sinica	34	1156-1164	2014		
41227	0	Liu Z.J.a, Zhou W.a, Shen J.B.b, Li S.T.a, Liang G.Q.a, Wang X.B.a, Sun J.W.a, Ai C.a	Soil Quality Assessment of Acid Sulfate Paddy Soils with Different Productivities in Guangdong Province, China	Journal of Integrative Agriculture	13	177-186	2014		
41228	0	Zhu Y., Xue B., Wang A., Wang W., Zhou A., Huang S., Liu Y.	Comprehensive bioinformatic analysis of bZIP transcription factors in Solanum lycopersicum	Chinese Journal of Applied and Environmental Biology	20	767-774	2014		
41229	0	Zuo S.M., Zhu Y.J., Yin Y.J., Wang H., Zhang Y.F., Chen Z.X., Gu S.L., Pan X.B.	Comparison and confirmation of quantitative trait loci conferring partial resistance to rice sheath blight on chromosome 9	Plant Dis.	98	957-964	2014		
41231	0	Wang C.a b, Xu F.a, Zhang M.b c	Effect of ultrasound time on physicochemical and functional properties of rice bran protein	Journal of the Chinese Cereals and Oils Association	29	43-47 and 56	2014		
41232	0	He H.B.a, Yang R.a, Chen L.b, Fan H.a, Wang X.a, Wang S.Y.a, Cheng H.W.a, Ma F.Y.a	Rice root system spatial distribution characteristics at flowering stage and grain yield under plastic mulching drip irrigation (PMDI)	Journal of Animal and Plant Sciences	24	290-301	2014		
41233	0	Zhang P.a b, Deng H.a, Liu Y.a c	Interaction of arginine/serine-rich proteins from different subfamilies of rice	Chinese Journal of Applied and Environmental Biology	20	144-147	2014		
41234	0	Li Y.Y.a, Tao H.J.a, Zhao X.Q.b, Xu J.a, Li G.M.a, Hu S.K.a, Dong G.J.a, Shi Z.Y.a, Wu L.W.a, Hu J.a, Ye G.Y.b, Guo L.B.a	Molecular improvement of grain weight and yield in rice by using GW6 gene	Rice Science	21	127-132	2014		
41235	0	Lu Z.B.a, Han N.S.a, Tian J.C.a b, Peng Y.F.c, Hu C.a, Guo Y.Y.c, Shen Z.C.a, Ye G.Y.a	Transgenic cry1Ab/vip3H+epsps Rice with Insect and Herbicide Resistance Acted No Adverse Impacts on the Population Growth of a Non-Target Herbivore, the White-Backed Planthopper, Under Laboratory and Field Conditions	Journal of Integrative Agriculture	13	2678-2689	2014		
41236	0	Liu Q.H., Wu X., Chen B.C., Xin C.Y., Chen F., Wang Y., Sun Z.W., Ma J.Q.	Effects of different irrigation methods on grain quality of japonica rice in Huanghuai District of China	Chinese Journal of Applied Ecology	25	2583-2590	2014		
41237	0	Wu Z.M.a, Zhang X.b, Wang J.L.b, Wan J.M.b	Leaf chloroplast ultrastructure and photosynthetic properties of a chlorophyll-deficient mutant of rice	Photosynthetica	52	217-222	2014		
41238	0	Wang H.T.a, Jin F.a, Jiang Y.J.b, Lin Q.S.c, Xu H.a, Cheng L.a, Xia Y.J.a, Liu C.X.a, Chen W.F.a, Xu Z.J.a	Effect of Environment and Genetic Recombination on Subspecies and Economic Trait Differentiation in the F2 and F3 Generations from indica-japonica Hybridization	Journal of Integrative Agriculture	13	18-30	2014		
41239	0	Zhang H.L.a c, Huang J.Z.a, Chen X.Y.b, Tan Y.Y.a, Shu Q.Y.a c	Competitive amplification of differentially melting amplicons facilitates efficient genotyping of photoperiod- and temperature-sensitive genic male sterility in rice	Molecular Breeding	34	1765-1776	2014		
41240	0	Miao L.Y.a, Zhou L.b, Yang S.a, Li L.Y.a, Li X.J.a, Fan W.a, Lan J.P.a, Shi J.N.a, Liu L.J.a, Liu G.Z.a	Characterization of transcription, expression and binding properties with W-box of rice transcription factor WRKY42 Gene	Progress in Biochemistry and Biophysics	41	682-692	2014		
41241	25195461	Yang Y.Y., Mei F., Zhang W., Shen Z., Fang J.	Creation of Bt rice expressing a fusion protein of Cry1Ac and Cry1I-like using a green tissue-specific promoter	J. Econ. Entomol.	107	1674-1679	2014		
41242	0	Sun J.a, Zou D.T.a, Luan F.S.b, Zhao H.W.a, Wang J.G.a, Liu H.L.a, Xie D.W.a, Su D.Q.c, Ma J.a, Liu Z.L.a	Dynamic QTL analysis of the Na+ content, K+ content, and Na+/K+ ratio in rice roots during the field growth under salt stress	Biol. Plant.	58	689-696	2014		
41243	0	Tang X.a c, Zhou X.a, Wu J.a e, Li J.d, Bai L.b d	A novel function of sanshools: The alleviation of injury from metolachlor in rice seedlings	Pestic Biochem Physiol	110	44-49	2014		
41244	0	Duan B.B., Lu W.	Hydrogen sulfide alleviates rice photoinhibition by promoting the activity of photosystem II in strong light stress	Zhiwu Shengli Xuebao/Plant Physiology Journal	50	1019-1026	2014		
41245	0	Wang J.a b, Zou D.b, Zheng H.b, Zhao H.b, Liu H.b, Jiang T.a	Genetic relationships between plant height and its components in Japonica rice	Agron J	106	1379-1388	2014		
41246	0	Xu F.F., Tang F.F., Shao Y.F., Chen Y.L., Tong C., Bao J.S.	Genotype ~ environment interactions for agronomic traits of rice revealed by association mapping	Rice Science	21	133-141	2014		
41247	0	Yu R., Xu X., Liang Y., Tian H., Pan Z., Jin S., Wang N., Zhang W.	The insect ecdysone receptor is a good potential target for RNAi-based pest control	Int. J. Biol. Sci.	10	1171-1180	2014		
41248	0	Guo S., Zhang T., Xing Y., Zhu X., Sang X., Ling Y., Wang N., He G.H.	Identification and gene mapping of an early senescence leaf 4 mutant of rice	Crop Sci.	54	2713-2723	2014		
41249	0	Deng L.a b, Chen F.a, Jiang L.a b, Lam H.M.c, Xiao G.a	Ectopic expression of GmPAP3 enhances salt tolerance in rice by alleviating oxidative damage	Plant Breeding	133	348-355	2014		
41250	0	Zhou M.L.a b, Zhang Q.a, Sun Z.M.b, Chen L.H.c, Liu B.X.b, Zhang K.X.b, Zhu X.M.d, Shao J.R.a, Tang Y.X.b, Wu Y.M.b	Trehalose Metabolism-Related Genes in Maize	J. Plant Growth Regul.	33	256-271	2014		
41251	0	WANG W.X., LAI F.X., LI K.L., FU Q.	Selection of Reference Genes for Gene Expression Analysis in Nilaparvata lugens with Different Levels of Virulence on Rice by Quantitative Real-Time PCR	Rice Science	21	305-311	2014		
41252	0	Zhang F., Wu X.N., Zhou H.M., Wang D.F., Jiang T.T., Sun Y.F., Cao Y., Pei W.X., Sun S.B., Xu G.H.	Overexpression of rice phosphate transporter gene OsPT6 enhances phosphate uptake and accumulation in transgenic rice plants	Plant Soil	384	259-270	2014		
41253	0	Zhou W., Lou Y.	Effect of controlled-release nitrogen fertilizer on CH4 emission in transgenic rice from a paddy soil	Shengtai Xuebao/ Acta Ecologica Sinica	34	4555-4560	2014		
41254	0	Rehmani M.I.A.a b c, Wei G.a b, Hussain N.d, Ding C.a b, Li G.a b, Liu Z.a b, Wang S.a b, Ding Y.a b	Yield and quality responses of two indica rice hybrids to post-anthesis asymmetric day and night open-field warming in lower reaches of Yangtze River delta	Field Crops Res.	156	231-241	2014		
41255	0	Yang Y.a, Shi C.a, Zhou Y.b, Wu J.c, Jin X.a, Shou J.a	Morphological characteristics and gene mapping of a dense panicle (dp2) mutant in rice (Oryza sativa L.)	Genes and Genomics	36	313-319	2014		
41256	0	Ding Y., Feng R., Wang R., Guo J., Zheng X.	A dual effect of Se on Cd toxicity: Evidence from plant growth, root morphology and responses of the antioxidative systems of paddy rice	Plant Soil	375	289-301	2014		
41257	0	He Y., Zhan F., Zu Y., Liu C., Li Y.	Effect of elevated UV-B radiation on the antioxidant system of two rice landraces in paddy fields on Yuanyang terrace	Int J Agric Biol	16	585-590	2014		
41258	0	Shu X., Sun J., Wu D.	Effects of grain development on formation of resistant starch in rice	Food Chem	164	89-97	2014		
41259	0	Ding H.a, Lu H.c, Lavoie M.b, Xie J.a, Li Y.a, Lv X.a, Fu Z.a, Qian H.a d	Unraveling the toxicity mechanisms of the herbicide diclofop-methyl in rice: Modulation of the activity of key enzymes involved in citrate metabolism and induction of cell membrane anion channels	J. Agric. Food Chem.	62	10654-10660	2014		
41260	0	Chen J.a, Mo Y.W.b c, Xu H.W.d	Calcium signaling is involved in negative phototropism of rice seminal roots	Rice Science	21	39-46	2014		
41261	0	Zhao Y.Y.a, Wang D.F.a, Wu T.Q.b, Guo A.c, Dong H.S.a, Zhang C.L.a	Transgenic expression of a rice riboflavin synthase gene in tobacco enhances plant growth and resistance to Tobacco mosaic virus	Canadian Journal of Plant Pathology	36	100-109	2014		
41262	0	Pan X.a, Li Y.a, Zhang H.b, Huang R.b, Liu W.a, Ming J.a, Liu S.a, Li X.a	Expression of signalling and defence-related genes mediated by over-expression of JERF1, and increased resistance to sheath blight in rice	Plant Pathol.	63	109-116	2014		
41263	0	Zhang W., Xing F., Selvaraj J.N., Liu Y.	Comparison of DNA extraction methods for GM Rice and GM rice-derived food products in China	J. Food Biochem.	38	388-396	2014		
41264	0	Zhang X.C., Alim M.A., Lin Z.M., Liu Z.H., Li G.H., Wang Q.S., Wang S.H., Ding Y.F.	Analysis of variations in white-belly and white-core rice kernels within a panicle and the effect of panicle type	Journal of Integrative Agriculture	13	1672-1679	2014		
41265	0	Niu X.a, Xiong F.b, Liu J.a, Sui Y.a, Zeng Z.b, Lu B.R.c, Liu Y.a b d	Co-expression of ApGSMT and ApDMT promotes biosynthesis of glycine betaine in rice (Oryza sativa L.) and enhances salt and cold tolerance	Environ. Exp. Bot.	104	16-25	2014		
41266	0	Ren Y.a b, Tang Y.a b, Xie K.a b, Li W.a b, Ye S.a b, Gao F.a b, Zou T.a b, Li X.a b, Deng Q.a b, Wang S.a b, Zheng A.a b, Zhu J.a b, Liu H.a b, Wang L.a b, Li P.a b c, Li S.a b	Mutation of a U-box E3 ubiquitin ligase results in brassinosteroid insensitivity in rice	Molecular Breeding	34	115-125	2014		
41267	0	Hou X.J., Liu S.R., Khan M.R.G., Hu C.G., Zhang J.Z.	Genome-Wide Identification, Classification, Expression Profiling, and SSR Marker Development of the MADS-box gene Family in Citrus	Plant Molecular Biology Reporter	32	28-41	2014		
41268	0	Guo T., Liao M.	Suppression of Rhizoctonia solani and induction of host plant resistance by Paenibacillus kribbensis PS04 towards controlling of rice sheath blight	Biocontrol Sci Technol	24	116-121	2014		
41269	0	Marcaida M.a, Li T.a, Angeles O.a, Evangelista G.K.a, Fontanilla M.A.a, Xu J.b, Gao Y.b, Li Z.b, Ali J.a	Biomass accumulation and partitioning of newly developed Green Super Rice (GSR) cultivars under drought stress during the reproductive stage	Field Crops Res.	162	30-38	2014		
41270	0	Zhang Y.H.a, Huang L.H.b	Effect of heat-induced formation of rice bran protein fibrils on morphological structure and physicochemical properties in solutions and gels	Food Sci. Biotechnol.	23	1417-1423	2014		
41271	0	Chen Y.N.a, Wie W.H.a, Ren X.P.a, Zhao X.Y.a, Zhou X.J.a, Huang L.a, Tang X.C.b, Jiang H.F.a	Construction of a high-quality genomic BAC library for Chinese peanut cultivar Zhonghua 8 with high oil content	Botanical Studies	55		2014		
41272	0	Cai R., Zhao Y., Wang Y., Lin Y., Peng X., Li Q., Chang Y., Jiang H., Xiang Y., Cheng B.	Overexpression of a maize WRKY58 gene enhances drought and salt tolerance in transgenic rice	Plant Cell Tissue Organ Cult.	119	565-577	2014		
41273	0	Song W., Zhang M., Gan X., Lu R.	Regression analysis of relationship of quality indexes and volatile compounds in japonica rice during storage	Journal of the Chinese Cereals and Oils Association	29	97-103	2014		
41274	0	Zhang Z.C., Li Y.F., Zhang B., Yang X.	Influence of weeds in Echinochloa on growth and yield of rice	Chinese Journal of Applied Ecology	25	3177-3184	2014		
41275	0	Zhu Y.a, Zuo S.a, Chen Z.a, Chen X.a, Li G.a, Zhang Y.a, Zhang G.b, Pan X.c	Identification of two major rice sheath blight resista1nce QTLs, qSB1-1HJX74 and qSB11HJX74, in field trials using chromosome segment substitution lines	Plant Dis.	98	1112-1121	2014		
41276	0	Wang L., Zhang F.C., Jing Y.S., Jiang X.D., Yang S.B., Han X.M.	Multi-temporal detection of rice phenological stages using canopy stagespectrum	Rice Science	21	108-115	2014		
41277	0	Yang C., Wang Z., Yang X., Lu B.R.	Segregation distortion affected by transgenes in early generations of rice crop-weed hybrid progeny: Implications for assessing potential evolutionary impacts from transgene flow into wild relatives	J Syst Evol	52	466-476	2014		
41278	0	Zhang W., Xing F., Selvaraj J.N., Liu Y.	Degradation of Endogenous and Exogenous Genes of Genetically Modified Rice with Cry1Ab during Food Processing	J. Food Sci.	79	T1055-T1065	2014		
41279	0	Sheng Y.a, Qi X.a, Liu Y.a, Guo M.a, Chen S.a, He X.a b, Huang K.a b, Xu W.a b	Subchronic toxicity study in vivo and allergenicity study in vitro for genetically modified rice that expresses pharmaceutical protein (human serum albumin)	Food and Chemical Toxicology	72	242-246	2014		
41281	24737465	Jiang X.H.a b, She C.W.b, Zhu Y.H.a, Liu X.M.a	Cloning and expression analysis of the Lonicera japonica Thunb. chlorogenic acid synthetase gene (LjCCoAOMT1) in rice	Genetics and Molecular Research	13	2166-2176	2014		
41282	0	Yang W.a, Zhang H.a, Li M.a, Wang Z.b, Zhou J.c, Wang S.c, Lu G.b, Fu F.a b	Early diagnosis of blast fungus, Magnaporthe oryzae, in rice plant by using an ultra-sensitive electrically magnetic-controllable electrochemical biosensor	Anal. Chim. Acta	850	85-91	2014		
41283	0	Ji Z.a c, Shi J.b, Zeng Y.a, Qian Q.a c, Yang C.a	Application of a simplified marker-assisted backcross technique for hybrid breeding in rice	Biologia (Poland)	69	463-468	2014		
41284	0	Kang G.P.a b, Dai X.J.a, Ou L.J.a, Li W.J.a, Liang M.Z.a, Chen L.B.a	Effects of cytoplasm on the fertility of thermo-sensitive genetic male sterile (TGMS) lines of rice	Aust J Crop Sci	8	999-1004	2014		
41285	0	Kim Y.a, Wang M.a, Bai Y.a, Zeng Z.a, Guo F.a, Han N.a, Bian H.a, Wang J.a, Pan J.b, Zhu M.a	Bcl-2 suppresses activation of VPEs by inhibiting cytosolic Ca2+ level with elevated K+ efflux in NaCl-induced PCD in rice	Plant Physiology and Biochemistry	80	168-175	2014		
41286	0	Yan W.a b, Chen G.H.b, Yang L.F.b, Gai J.Y.a, Zhu Y.L.a b b	Overexpression of the rice phosphate transporter gene OsPT6 enhances tolerance to low phosphorus stress in vegetable soybean	Sci. Hortic.	177	71-76	2014		
41287	0	Shi Y.a, Zhao G.a, Xu X.a, Li J.a b	Discovery of a new fragrance allele and development of functional markers for identifying diverse fragrant genotypes in rice	Molecular Breeding	33	701-708	2014		
41288	0	Guo J.a, Wang F.b, Zhang X.S.b	Knockdown expression of the B-type cyclin gene Orysa;CycB1;1 leads to triploid rice	Journal of Plant Biology	57	43-47	2014		
41289	24200857	Zhang M., Zhuo Q., Tian Y., Piao J., Yang X.	Long-term toxicity study on transgenic rice with Cry1Ac and sck genes	Food and Chemical Toxicology	63	76-83	2014		
41290	0	Ni J.a b, Shen Y.X.a, Zhang Y.Y.a, Liu Y.b	Histological characterization of the lateral root primordium development in rice	Botanical Studies	55		2014		
41291	0	Li G.a b, Xu Q.L.a, He C.M.a, Zeng L.a, Wang H.F.a	Two new anti-fungal diterpenoids from the husks of Oryza sativa	Phytochem Lett	10	309-312	2014		
41292	0	Jiang Y.a, Meng J.a, Zhang L.a, Cai M.a, Li C.a, Zhan M.a, Wang J.a, Wang B.a b, Mohamed I.a c, Cao C.a	Non-target effects of Bt transgenes on grain yield and related traits of an elite restorer rice line in response to nitrogen and potassium applications	Field Crops Res.	169	39-48	2014		
41293	0	Chen L.S.a b, Wang K.a b	Diagnosing of rice nitrogen stress based on static scanning technology and image information extraction	Journal of Soil Science and Plant Nutrition	14	382-393	2014		
41294	0	Zuo S.M., Zhang Y.F., Chen Z.X., Jiang W., Feng M.H., Pan X.B.	Improvement of Rice Resistance to Sheath Blight by Pyramiding QTLs Conditioning Disease Resistance and tiller angle	Rice Science	21	318-326	2014		
41295	0	Li P., Feng F., Zhang Q., Chao Y., Gao G., He Y.	Genetic mapping and validation of quantitative trait loci for stigma exsertion rate in rice	Molecular Breeding	34	2131-2138	2014		
41296	0	Li W.T., Chen W.L., Yang C., Wang J., Yang L., He M., Wang J.C., Qin P., Wang Y.P., Ma B.T., Li S.G., Chen X.W.	Identification and network construction of zinc finger protein (ZFP) genes involved in the rice-Magnaporthe oryzae interaction	Plant OMICS	7	540-548	2014		
41297	0	Li Z., Wang F., Lei B., Cao Z., Pan G., Cheng F.	Genotypic-dependent alteration in transcriptional expression of various CAT isoenzyme genes in esl mutant rice and its relation to H2O2-induced leaf senescence	Plant Growth Regul.	73	237-248	2014	CATC,CATB,_,CATA	OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,ESL,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
41298	0	Hu W.a, Lv Y.b, Lei W.a, Li X.a, Chen Y.a, Zheng L.a, Xia Y.a, Shen Z.a	Cloning and characterization of the Oryza sativa wall-associated kinase gene OsWAK11 and its transcriptional response to abiotic stresses	Plant Soil	384	335-346	2014		
41299	0	Luo L.L.a b, Zhang Y.X.a, Chen D.B.a, Zhan X.D.a, Shen X.H.a, Cheng S.H.a, Cao L.Y.a	QTL mapping for hull thickness and related traits in hybrid rice xieyou 9308	Rice Science	21	29-38	2014		
41300	0	Ou S.Q.a, Gao J.a, Peng D.L.b, Qi C.Y.c, Zhang J.H.d, Meng Y.d, Lu B.H.d	First report of Aphelenchoides besseyi causing white tip disease of rice in Jilin Province, China	Plant Dis.	98	1165	2014		
41301	0	Zhao F.Y.a, Wang K.a, Zhang S.Y.b, Ren J.a, Liu T.a, Wang X.a	Crosstalk between ABA, auxin, MAPK signaling, and the cell cycle in cadmium-stressed rice seedlings	Acta Physiologiae Plantarum	36	1879-1892	2014		
41302	0	Li L.a, Xue X.a, Chen Z.a, Zhang Y.a, Ma Y.b, Pan C.c, Zhu J.c, Pan X.a, Zuo S.a	Isolation and characterization of rl(t), a gene that controls leaf rolling in rice	Chinese Science Bulletin	59	3142-3152	2014		
41303	0	Peng X.a, Liu R.a, Yang J.b c, Ding X.a, Wang F.a, Li Y.b c, Cai Y.d	Construction and identification of a mixed cDNA library of rice roots under salt and drought stress using Gateway technology	Chinese Journal of Applied and Environmental Biology	20	291-294	2014		
41304	0	Zhou X.Q., Wang L.Z., Zhang Y.R., Lun L.F., Zhang Z.C., Cui Y.K.	Storage quality changes and correlation analysis of rice after low temperature released	Modern Food Science and Technology	30	42-46+17	2014		
41305	0	Weng L.a, Deng L.a, Lai F.b, Xiao G.a	Optimization of the Cry2Aa gene and development of insect-resistant and herbicide-tolerant photoperiod-sensitive genic male sterile rice	Czech Journal of Genetics and Plant Breeding	50	19-25	2014		
41306	0	Shen C.a, Li D.c, He R.a, Fang Z.a, Xia Y.b, Gao J.a, Shen H.b, Cao M.a b	Comparative transcriptome analysis of RNA-seq data for cold-tolerant and cold-sensitive rice genotypes under cold stress	Journal of Plant Biology	57	337-348	2014		
41307	0	Wang Y.a, Zhang L.b, Li Y.a, Liu Y.a, Han L.a, Zhu Z.b, Wang F.c, Peng Y.a	Expression of Cry1Ab protein in a marker-free transgenic bt rice line and its efficacy in controlling a target pest, chilo suppressalis (Lepidoptera: Crambidae)	Environ. Entomol.	43	528-536	2014		
41308	0	Wu H.a, Liu Y.a, He J.a, Liu Y.a, Jiang L.a, Liu L.a, Wang C.a, Cheng X.a, Wan J.a b	Fine mapping of brown planthopper (Nilaparvata lugens Stal) resistance gene Bph28(t) in rice (Oryza sativa L.)	Molecular Breeding	33	909-918	2014		
41309	0	Zhang Q.a, Xiang J.a b, Zhang L.c, Zhu X.a, Evers J.d, van der Werf W.d, Duan L.a	Optimizing soaking and germination conditions to improve gamma-aminobutyric acid content in japonica and indica germinated brown rice	J Funct Foods	10	283-291	2014		
41310	0	Zhou Y.L.a b, Xie X.W.a, Zhang F.a b, Wang S.c, Liu X.Z.c, Zhu L.H.a, Xu J.L.a b, Gao Y.M.a b, Li Z.K.a b	Detection of quantitative resistance loci associated with resistance to rice false smut (Ustilaginoidea virens) using introgression lines	Plant Pathol.	63	365-372	2014		
41311	0	Zhang X.a b, Xiong H.c, Liu A.a b, Zhou X.a b, Peng Y.b, Li Z.a, Luo G.a, Tian X.d, Chen X.a b	Microarray data uncover the genome-wide gene expression patterns in response to heat stress in rice post-meiosis panicle	Journal of Plant Biology	57	327-336	2014		
41312	0	Zhen X.H.a, Xu J.G.a, Shen W.J.a, Zhang X.J.a, Zhang Q.J.b, Lu C.G.b, Chen G.X.a c, Gao Z.P.a	Photosynthetic Characteristics of Flag Leaves in Rice White Stripe Mutant 6001 During Senescence Process	Rice Science	21	335-342	2014		
41313	0	Jian Z.a, Wang F.a, Li Z.a, Chen Y.a, Ma X.a, Nie L.a, Cui K.a, Peng S.a, Lin Y.a, Song H.b, Li Y.a, Huang J.a	grain yield and nitrogen use efficiency responses to N application in Bt (Cry1Ab/Ac) transgenic two-line hybrid rice	Field Crops Res.	155	184-191	2014		
41314	0	Xu W., Liu X., Xie L., Ying Y.	Comparison of fourier transform near-infrared, visible near-infrared, mid-infrared, and raman spectroscopy as non-invasive tools for transgenic rice discrimination	Transactions of the ASABE	57	141-150	2014		
41315	0	Hou C.a, Lv T.a, Zhan Y.a, Peng Y.a, Huang Y.b, Jiang D.a, Weng X.a	Overexpression of the RIXI xylanase inhibitor improves disease resistance to the fungal pathogen, Magnaporthe oryzae, in rice	Plant Cell Tissue Organ Cult.	120	167-177	2014		
41316	0	Hu T.	A glutathione S-transferase confers herbicide tolerance in rice [Uma glutationa S-transferase confere tolerancia a herbicida em arroz]	Crop Breeding and Applied Biotechnology	14	76-81	2014		
41317	0	Chen H., Shan J., Yang K., Wang Y.Y., Lu C.M.	Abundant variation of Waxy gene in Yunnan Rice landraces and molecular characterization of a novel Wxzm allele	Crop Sci.	54	2152-2159	2014		
41318	0	Zhang B.a b, Sun C.b, Xie D.a, Tan L.b	Global gene expression analysis of a rice high-tillering dwarf mutant	Genes and Genomics	36	485-496	2014		
41319	0	Chu X., Guo Y., He J., Yao X., Zhu Y., Cao W., Cheng T., Tian Y.	Comparison of different hyperspectral vegetation indices for estimating canopy leaf nitrogen accumulation in rice	Agron J	106	1911-1920	2014		
41320	0	Li X.D.a b, Yang Y.J.a, Tian J.C.a, Xu H.X.a, Zheng X.S.a, Lu Z.X.a b	Ecological responses of brown planthopper, Nilaparvata lugens, to triazophos and deltamethrin on transgenic Bt rice lines and their non-Bt parental rice	Chinese Journal of Applied Ecology	25	3006-3010	2014		
41321	0	Chen S.a, Zheng X.b, Wang D.a, Xu C.a, Zhang X.a	Effect of Enhanced Panicle Fertilization on Nitrogen Use Efficiency Traits of Rice (Oryza Sativa) with Different Planting Patterns	J Plant Nutr	37	1316-1326	2014		
41322	0	Chen Y.a, Jin J.H.a, Jiang Q.S.a, Yu C.L.a, Chen J.b, Xu L.G.a, Jiang D.A.a	Sodium bisulfite enhances photosynthesis in rice by inducing Rubisco activase gene expression	Photosynthetica	52	475-478	2014		
41323	0	Zheng X., Chen S., Li Q., Lin R., Lin W.	Determination of Phenolic Acids in Root Exudates of Allelopathic Rice by Solid Phase Extraction-Ion Chromatography with Conductivity Detection	Anal Lett	47	2156-2164	2014		
41324	24390331	Yao M.a, Liu X.a, Li S.b, Xu Y.c, Zhou Y.b, Zhou X.c d, Tao X.a	Rice stripe tenuivirus NSvc2 glycoproteins targeted to the golgi body by the N-terminal transmembrane domain and adjacent cytosolic 24 amino acids via the COP I- and COP II-dependent secretion pathway	J. Virol.	88	3223-3234	2014		
41325	0	Zhang Z.Y.a b, Meng J.a b, Dang S.b, Chen W.F.a b b	Effect of biochar on relieving cadmium stress and reducing accumulation in super japonica rice	Journal of Integrative Agriculture	13	547-553	2014		
41326	0	Bian J., He H., Shi H., Zhu G., Li C., Zhu C., Peng X., Yu Q., Fu J., He X., Chen X., Hu L., Ouyang L.	Quantitative trait loci mapping for flag leaf traits in rice using a chromosome segment substitution line population	Plant Breeding	133	203-209	2014		
41327	24472210	Lu Z.B.a, Tian J.C.b, Wang W.a, Xu H.X.b, Hu C.a, Guo Y.Y.c, Peng Y.F.c, Ye G.Y.a	Impacts of Bt rice expressing Cry1C or Cry2A protein on the performance of nontarget leafhopper, Nephotettix cincticeps (Hemiptera: Cicadellidae), under laboratory and field conditions	Environ. Entomol.	43	209-217	2014		
41328	0	Liu H.a, Xiao Z.a, Wang N.a, Wang P.a, Ma T.b	Study on ultrasound-assisted extraction and properties of rice bran protein	Nongye Jixie Xuebao/Transactions of the Chinese Society for Agricultural Machinery	45	235-241	2014		
41329	0	Xu J.a, Deng Y.a, Li Q.a, Zhu X.b, He Z.a	stripe2 Encodes a Putative dCMP Deaminase that Plays an Important Role in Chloroplast Development in Rice	Journal of Genetics and Genomics	41	539-548	2014	ST2	ALR, OsDCD, DCD
41330	0	Qin X.a, Zhang R.a, Zhang J.b, Shi Y.c	Physiological efects of paichongding applied to rice on the Nilaparvata lugens (Sta l), the brown planthopper	Arch. Insect Biochem. Physiol.	87	72-84	2014		
41331	0	Song Y.a b, Liu H.b	The allelopathic effect of ginseng root exudates on rice seeds	J Chem Pharm Res	6	785-789	2014		
41332	0	Yin Z.J.a, Liu H.L.a, Dong X.a, Tian L.a, Xiao L.a, Xu Y.N.b, Qu L.Q.a	Increasing alpha-linolenic acid content in rice bran by embryo-specific expression of omega3/Delta15-desaturase gene	Molecular Breeding	33	987-996	2014		
41333	0	Chen Z.X.a, Zhang Y.F.a, Feng F.a, Feng M.H.a, Jiang W.a, Ma Y.Y.c, Pan C.H.d, Hua H.L.b, Li G.S.b, Pan X.B.a, Zuo S.M.a	Improvement of japonica rice resistance to sheath blight by pyramiding qSB-9TQ and qSB-7TQ	Field Crops Res.	161	118-127	2014		
41334	0	Gao Y.a, Xiao Z.a b, Liu H.a, Yang Y.a, Liang Z.c, Tian J.c	Extrusion passivating parameters of peroxidase in full-fat rice bran	Journal of the Chinese Cereals and Oils Association	29	79-86	2014		
41335	0	Chen Q.F.a, Ya H.Y.a, Wang W.D.a, Jiao Z.a, Ya H.Y.b	RNA-seq reveals the downregulated proteins related to photosynthesis in growth-inhibited rice seedlings induced by low-energy N+ beam implantation	Genetics and Molecular Research	13	7029-7036	2014		
41336	0	Cai J.a b, Dai Z.J.b, Zhu H.T.b, Zeng R.Z.b, Zhang Z.M.b, Ma T.T.a, Zhang G.Q.b	Comparative analysis of fertility restoration genes for WA, Y, and DA cytoplasmic male sterility in rice	Biol. Plant.	58	241-246	2014		
41337	0	Wang S.a, Fu H.W.b, Yang Y.Z.a	Stress effects of imidacloprid on RSV in rice plants	Chinese Journal of Applied Ecology	25	3593-3599	2014		
41338	0	Chen T., Zhang Y.D., Zhu Z., Zhao L., Zhao Q.Y., Zhou L.H., Yao S., Yu X., Wang C.L.	Development of new indel marker to detect genotypes of Rf-1a conferring fertility restoration of BT-type cytoplasmic male sterility in rice	Rice Science	21	13-19	2014		
41339	0	Mahmood K.a b e, Khan M.B.b c, Ijaz M.d, Zeng R.S.a b, Luo S.M.a b	Molecular, biochemical and bioassay based evidence of lower allelopathic potential in genetically modified rice	Plant Growth Regul.	74	73-82	2014		
41340	0	Tan M.a, Xu J.b, Li F.b, Zhang C.a	Physiological mechanisms of improving rice (Oryza sativa L.) seed vigor through arc-tooth-shaped corona discharge field treatment	Aust J Crop Sci	8	1495-1502	2014		
41341	0	Zhao F.M.a, Zhang G.Q.b, Yang Z.L.a, He G.H.a	Pyramiding QTL for yield-related traits and grain shape in rice using single-segment substitution lines	Indian Journal of Genetics and Plant Breeding	74	496-498	2014		
41342	0	Lang J., Zhu Y.	Comparison of two methods for determination of catalase activity in rice	Journal of the Chinese Cereals and Oils Association	29	89-93+99	2014		
41343	0	Sun R.a b c, Du P.b, Jiang L.b, An D.a, Li Y.b	Heterologous expression of artificial miRNAs from rice dwarf virus in transgenic rice	Plant Cell Tissue Organ Cult.	116	353-360	2014		
41344	0	Yang X.a, Jiang L.a, Yang C.a, Li H.a, Liu L.a, Wan J.a b	Semidwarf gene sdk has pleiotropic effects on rice (Oryza sativa L.) plant architecture	Plant Breeding	133	335-340	2014		
41345	0	Zhou L.a b, Yu H.a, Yu L.c, Zhang L.a, Sui Y.a, Ren S.a	Evaluation of light use efficiency using the chlorophyll fluorescence spectra	Nongye Jixie Xuebao/Transactions of the Chinese Society for Agricultural Machinery	45	255-259	2014		
41346	0	Xing W., Zhao H., Zou D.	Detection of main-effect and epistatic QTL for yield-related traits in rice under drought stress and normal conditions	Canadian Journal of Plant Science	94	633-641	2014		
41347	0	Xu D., Mou G., Wang K., Zhou G.	MicroRNAs responding to southern rice black-streaked dwarf virus infection and their target genes associated with symptom development in rice	Virus Res.	190	60-68	2014		
41348	0	Guo P.a b, Wu Y.a, Li J.a c, Fang R.a, Jia Y.a	Efficient transient expression to analyze miRNA targets in rice protoplasts	Shengwu Gongcheng Xuebao/Chinese Journal of Biotechnology	30	1751-1762	2014		
41349	0	Zhang Y.a, Huang L.b, Ting S.a, Wang S.a, Lin Y.a	Effect of ionic strength on formation and microstructure of self-assembly globulin nanofibrils and gels	Digest Journal of Nanomaterials and Biostructures	9	951-957	2014		
41350	0	Li P.a b, Dong J.a b, Yang S.a b, Bai L.a b, Wang J.a b, Wu G.a b, Wu X.a b, Yao Q.a b, Tang X.a b	Impact of beta-carotene transgenic rice with four synthetic genes on rhizosphere enzyme activities and bacterial communities at different growth stages	Eur. J. Soil Biol.	65	40-46	2014		
41351	0	Shao Y.a, Tang F.a, Huang Y.a, Xu F.a, Chen Y.a, Tong C.a, Chen H.b, Bao J.a	Analysis of genotype ~ environment interactions for polyphenols and antioxidant capacity of rice by association mapping	J. Agric. Food Chem.	62	5361-5368	2014		
41352	0	Shen H.C., Shi Y.F., Feng B.H., Wang H.M., Xu X., Huang Q.N., Lu X.G., Wu J.L.	Identification and genetic analysis of a novel rice spotted-leaf mutant with broad-spectrum resistance to xanthomonas oryzae pv. oryzae	Journal of Integrative Agriculture	13	713-721	2014		
41353	0	Yang P.M.a b, Huang Q.C.a, Qin G.Y.a, Zhao S.P.a, Zhou J.G.b	Different drought-stress responses in photosynthesis and reactive oxygen metabolism between autotetraploid and diploid rice	Photosynthetica	52	193-202	2014		
41354	0	Chen Y., Wang Y., Zhang H.	Genome-wide analysis of the mildew resistance locus o (MLO) gene family in tomato (Solanum lycopersicum L.)	Plant OMICS	7	87-93	2014		
41356	0	Chen R.a, Wang Y.a b, Zhu Z.a, Lan Q.a, Zhao X.a, Wang H.c, Guo Y.a, Wang Q.b	Development of the one-step visual loop-mediated isothermal amplification assay for genetically modified rice event TT51-1	Food Sci. Technol. Res.	20	71-77	2014		
41357	0	Yang L.a b, Du Z.a d, Gao F.c, Wu K.a b, Xie L.a b, Li Y.c, Wu Z.a b, Wu J.a b c	Transcriptome profiling confirmed correlations between symptoms and transcriptional changes in RDV infected rice and revealed nucleolus as a possible target of RDV manipulation	Virol. J.	11		2014		
41358	0	Chai L.a, Zhang J.a, Pan X.B.b, Zhang F.a, Zheng T.Q.a, Zhao X.Q.a, Wang W.S.a, Jauhar A.c, Xu J.L.a, Li Z.K.a	Advanced backcross QTL analysis for the whole plant growth duration salt tolerance in rice (Oryza sativa L.)	Journal of Integrative Agriculture	13	1609-1620	2014		
41359	0	Li X.M.a, Chen M.J.a, Li J.a, Ma L.J.a, Bu N.a, Li Y.Y.a, Zhang L.H.b	Effect of endophyte infection on chlorophyll a fluorescence in salinity stressed rice	Biol. Plant.	58	589-594	2014		
41360	0	Lu L., Zhu Z.	Prediction model for eating property of indica rice	J Food Qual	37	274-280	2014		
41361	0	Zhang W.J.a b, Li G.H.a b, Yang Y.M.b, Li Q.b, Zhang J.b, Liu J.Y.b, Wang S.b, Tang S.b, Ding Y.F.b	Effects of Nitrogen Application Rate and Ratio on Lodging Resistance of Super Rice with Different Genotypes	Journal of Integrative Agriculture	13	63-72	2014		
41362	0	Deng L.H.a b, Weng L.S.a b, Xiao G.Y.a	Optimization of EPSPS gene and development of double herbicide tolerant transgenic PGMS rice	Journal of Agricultural Science and Technology	16	217-228	2014		
41363	0	Guo L.B.a, Ye G.Y.b	Use of major quantitative trait loci to improve grain yield of rice	Rice Science	21	65-82	2014		
41364	0	Ai L.P., Shen A., Gao Z.C., Li Z.L., Sun Q.L., Li Y.Y., Luan W.J.	Reverse Genetic Analysis of Transcription Factor OsHox9, a Member of Homeobox Family, in Rice	Rice Science	21	312-317	2014		
41365	0	Man J.a b, Lin G.a b, Wang Z.c, Wang Y.a b, Liu Q.a b, Wei C.a b	Different structures of heterogeneous starch granules from High-amylose rice	J. Agric. Food Chem.	62	11254-11263	2014		
41366	0	Fu L., Yu X., An C.	OsCPK20 positively regulates Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea	Acta Physiologiae Plantarum	36	273-282	2014		
41367	0	Cao X., Gong J., Chen M., Yu S., Bian Y., Cao Z.	Analysis of rice leaves proteomes by liquid chromatography-tandem mass spectrometry based on the purification using a novel affinity detergent removal spin column	Chinese Journal of Chromatography (Se Pu)	32	1181-1186	2014		
41368	0	Zhang S.a b, Li J.a, Lee D.a, Xu H.a, Zhang L.a, Dongchen W.a, Xiong H.a, Zhu Q.a, Zhang X.a, Chen L.a	Genetic differentiation of Asian weedy rice revealed with InDel markers	Crop Sci.	54	2499-2508	2014		
41369	0	Li X.Y., Qiang S., Song X.L., Cai K., Sun Y.N., Shi Z.H., Dai W.M.	Allele Types of Rc Gene of Weedy Rice from Jiangsu Province, China	Rice Science	21	252-261	2014		
41370	25192280	Chueasiri C., Chunthong K., Pitnjam K., Chakhonkaen S., Sangarwut N., Sangsawang K., Suksangpanomrung M., Michaelson L.V., Napier J.A., Muangprom A.	Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development.	PLoS ONE	9(9)	e106386	2014		
41371	25239516	Sagar M., Pandey N., Qamar N., Singh B., Shukla A.	Domain analysis of 3 Keto Acyl-CoA synthase for structural variations in Vitis vinifera and Oryza brachyantha using comparative modelling.	Interdiscip Sci			2014		
41372	25208476	Zhou H., Zhou M., Yang Y., Li J., Zhu L., Jiang D., Dong J., Liu Q., Gu L., Zhou L., Feng M., Qin P., Hu X., Song C., Shi J., Song X., Ni E., Wu X., Deng Q., Liu Z., Chen M., Liu Y.G., Cao X., Zhuang C.	RNase Z(S1) processes UbL40 mRNAs and controls thermosensitive genic male sterility in rice.	Nat Commun	5	4884	2014	TMS5,_,UBL40-2,_	tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30,UbL40-1, OsUbL40-1,UbL40-2, OsUbL40-2,UbL40-4, OsUbL40-4
41373	25198435	Azizi P., Rafii M.Y., Abdullah S.N., Nejat N., Maziah M., Hanafi M.M., Latif M.A., Sahebi M.	Toward understanding of rice innate immunity against Magnaporthe oryzae.	Crit. Rev. Biotechnol.		1-10	2014		
41374	25246444	Chong J., Piron M.C., Meyer S., Merdinoglu D., Bertsch C., Mestre P.	The SWEET family of sugar transporters in grapevine: VvSWEET4 is involved in the interaction with Botrytis cinerea.	J. Exp. Bot.			2014		
41375	25245166	Lu J., Wang T., Xu Z., Sun L., Zhang Q.	Genome-wide analysis of the GRAS gene family in Prunus mume.	Mol. Genet. Genomics			2014		
41376	25273891	Ye N., Li H., Zhu G., Liu Y., Liu R., Xu W., Jing Y., Peng X., Zhang J.	Copper suppresses abscisic Acid catabolism and catalase activity, and inhibits seed germination of rice.	Plant Cell Physiol.	55(11)	2008-16	2014		
41377	25208645	Li R.Q., Huang J.Z., Zhao H.J., Fu H.W., Li Y.F., Liu G.Z., Shu Q.Y.	A down-regulated epi-allele of the genomes uncoupled 4 gene generates a xantha marker trait in rice.	Theor. Appl. Genet.	127(11)	2491-501	2014		
41378	25046435	Taniguchi M., Matsuhashi Y., Abe T.K., Ishiyama Y., Saitoh E., Kato T., Ochiai A., Tanaka T.	Contribution of cationic amino acids toward the inhibition of Arg-specific cysteine proteinase (Arg-gingipain) by the antimicrobial dodecapeptide, CL(14-25), from rice protein.	Biopolymers	102(5)	379-89	2014		
41379	25221924	Urarte E., Asensio A.C., Tellechea E., Pires L., Moran J.F.	Evaluation of the anti-nitrative effect of plant antioxidants using a cowpea Fe-superoxide dismutase as a target.	Plant Physiol. Biochem.	83	356-64	2014		
41380	25320558	Yan B., Liu R., Li Y., Wang Y., Gao G., Zhang Q., Liu X., Jiang G., He Y.	QTL analysis on rice grain appearance quality, as exemplifying the typical events of transgenic or backcrossing breeding.	Breed. Sci.	64(3)	231-9	2014		
41381	25284193	Nishizawa-Yokoi A., Endo M., Ohtsuki N., Saika H., Toki S.	Precision genome editing in plants via gene targeting and piggyBac-mediated marker excision.	Plant J.			2014		
41382	25345491	Cui L.G., Shan J.X., Shi M., Gao J.P., Lin H.X.	The miR156-SPL9-DFR pathway coordinates the relationship between development and abiotic stress tolerance in plants.	Plant J.			2014		
41383	25336336	Estioko L.P., Miro B., Baltazar A.M., Merca F.E., Ismail A.M., Johnson D.E.	Differences in responses to flooding by germinating seeds of two contrasting rice cultivars and two species of economically important grass weeds.	AoB Plants			2014		
41384	25311582	Xu Y., Iacuone S., Li S., Parish R.W.	MYB80 homologues in Arabidopsis, cotton and Brassica: regulation and functional conservation in tapetal and pollen development.	BMC Plant Biol.	14(1)	278	2014		
41385	25284137	Wang Y.N., Ke K.Q., Li Y.H., Han L.Z., Liu Y.M., Hua H.X., Peng Y.F.	Comparison of three transgenic Bt rice lines for insecticidal protein expression and resistance against a target pest, Chilo suppressalis (Lepidoptera: Crambidae).	Insect Science			2014		
41386	25190075	Lu X., Zhou Y., Wu T., Hao L.	Ameliorative effect of black rice anthocyanin on senescent mice induced by d-galactose.	Food Funct	5(11)	2892-7	2014		
41387	25344442	Xu D.B., Gao S.Q., Ma Y.Z., Xu Z.S., Zhao C.P., Tang Y.M., Li X.Y., Li L.C., Chen Y.F., Chen M.	ABI-like transcription factor gene TaABL1 from wheat improves multiple abiotic stress tolerances in transgenic plants.	Funct. Integr. Genomics			2014		
41388	25275554	Zhang L., Chen H., Li Y., Li Y., Wang S., Su J., Liu X., Chen D., Chen X.	Evaluation of the Agronomic Performance of Atrazine-Tolerant Transgenic japonica Rice Parental Lines for Utilization in Hybrid Seed Production.	PLoS ONE	9(9)	e108569	2014		
41389	25392067	Kido N., Yokoyama R., Yamamoto T., Furukawa J., Iwai H., Satoh S., Nishitani K.	The matrix polysaccharide (1;3,1;4)-beta-D-glucan is involved in silicon-dependent strengthening of rice cell wall.	Plant Cell Physiol.			2014		
41390	25572223	Swamy B.P., Kaladhar K., Reddy G.A., Viraktamath B.C., Sarla N.	Mapping and introgression of QTL for yield and related traits in two backcross populations derived from Oryza sativa cv. Swarna and two accessions of O. nivara.	J. Genet.	93(3)	643-54	2014		
41391	25488347	Dedicova B., Bermudez C., Prias M., Zuniga E., Brondani C.	High-throughput transformation pipeline for a Brazilian japonica rice with bar gene selection.	Protoplasma			2014		
41392	25481774	Kizhakkedath P., Jegadeeson V., Venkataraman G., Parida A.	A vacuolar antiporter is differentially regulated in leaves and roots of the halophytic wild rice Porteresia coarctata (Roxb.) Tateoka.	Mol. Biol. Rep.			2014		
41393	25492221	Terao T., Hirose T.	Control of grain protein contents through SEMIDWARF1 mutant alleles: SD1 increases the grain protein content in Dee-geo-woo-gen but not in Reimei.	Mol. Genet. Genomics			2014		
41394	25506299	Wang Y., Kwon S.J., Wu J., Choi J., Lee Y.H., Agrawal G.K., Tamogami S., Rakwal R., Park S.R., Kim B.G., Jung K.H., Kang K.Y., Kim S.G., Kim S.T.	Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection.	Plant Pathol. J.	30(4)	343-54	2014		
41395	25491793	Sengupta S., Das B., Acharyya P., Prasad M., Ghose T.	Genetic diversity analysis in a set of Caricaceae accessions using resistance gene analogues.	BMC Genet.	15(1)	137	2014		
41396	25443844	Meng Q., Rao L., Pan Y.	Enrichment and analysis of rice seedling Ubiquitin-related proteins using four UBA domains (GST-qUBAs).	Plant Sci.	229	172-80	2014		
41397	25572226	Mukherjee A., Sarkar S., Chakraborty A.S., Yelne R., Kavishetty V., Biswas T., Mandal N., Bhattacharyya S.	Phosphate acquisition efficiency and phosphate starvation tolerance locus (PSTOL1) in rice.	J. Genet.	93(3)	683-8	2014		
41398	25492397	Niu L., Lin H., Zhang F., Watira T.W., Li G., Tang Y., Wen J., Ratet P., Mysore K.S., Tadege M.	LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.	Plant J.			2014		
41399	25557147	Li X., Liu H., Wang M., Liu H., Tian X., Zhou W., Lv T., Wang Z., Chu C., Fang J., Bu Q.	Combinations of Hd2 and Hd4 genes determine rice adaptability to Heilongjiang Province, northern limit of China.	J Integr Plant Biol			2014		
41400	25263631	Zhao J., Zhang S., Yang T., Zeng Z., Huang Z., Liu Q., Wang X., Leach J., Leung H., Liu B.	Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms.	Physiol Plant			2014		
41401	25204204	Tuncel A., Cakir B., Hwang S.K., Okita T.W.	The role of the large subunit in redox regulation of the rice endosperm ADP-glucose pyrophosphorylase.	FEBS J.	281(21)	4951-63	2014		
41402	25268721	Kim G.R., Jung E.S., Lee S., Lim S.H., Ha S.H., Lee C.H.	Combined Mass Spectrometry-Based Metabolite Profiling of Different Pigmented Rice (Oryza sativa L.) Seeds and Correlation with Antioxidant Activities.	Molecules	19(10)	15673-86	2014		
41403	25213398	Zhang J.J., Wu S.Y., Jiang L., Wang J.L., Zhang X., Guo X.P., Wu C.Y., Wan J.M.	A detailed analysis of the leaf rolling mutant sll2 reveals complex nature in regulation of bulliform cell development in rice (Oryza sativa L.).	Plant Biol (Stuttg)			2014	SLL2	OsSLL2
41404	25195053	Qin B., Zhang Y., Wang M.	Molecular cloning and expression of a novel MYB transcription factor gene in rubber tree.	Mol. Biol. Rep.			2014		
41405	25205576	Kumar A., Dixit S., Ram T., Yadaw R.B., Mishra K.K., Mandal N.P.	Breeding high-yielding drought-tolerant rice: genetic variations and conventional and molecular approaches.	J. Exp. Bot.	65(21)	6265-78	2014		
41406	25253885	Gui J., Liu C., Shen J., Li L.	Grain setting defect1, Encoding a Remorin Protein, Affects the Grain Setting in Rice through Regulating Plasmodesmatal Conductance.	Plant Physiol.	166(3)	1463-78	2014	REM5.2,ACT1,REM6.5,REM6.4,REM6.3,REM6.1,REM6.2,REM1.5,REM1.3,REM1.1,REM1.2,REM0.1,REM4.1,REM5.1,REM4.3,REM4.2,REM1.4,REM0.2,REM5.3,GSD1	OsREM5.2,act1, AC1, RAC1, RAc1, ACT11, OsACT1,OsREM6.5,OsREM6.4,OsREM6.3,OsREM6.1,OsREM6.2,OsREM1.5,OsREM1.3,OsREM1.1,OsREM1.2,OsREM0.1,OsREM4.1,OsREM5.1,OsREM4.3,OsREM4.2,OsREM1.4,OsREM0.2,OsREM5.3,OsREM6.6, REM6.6, OsGSD1
41407	25231970	Miyata K., Kozaki T., Kouzai Y., Ozawa K., Ishii K., Asamizu E., Okabe Y., Umehara Y., Miyamoto A., Kobae Y., Akiyama K., Kaku H., Nishizawa Y., Shibuya N., Nakagawa T.	The Bifunctional Plant Receptor, OsCERK1, Regulates Both Chitin-Triggered Immunity and Arbuscular Mycorrhizal Symbiosis in Rice.	Plant Cell Physiol.	55(11)	1864-72	2014	CEBiP,AM2,_,AM3,AM1,AM11	CEBIP, Os-LYP1, LYP1, OsCEBiP,AM2,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,AM3,AM1, prx53,AM11
41408	25239514	Tripathi V., Tripathi P.	Molecular phylogenetics and comparative modeling of MnSOD, an enzyme involved during environmental stress conditions in Oryza sativa.	Interdiscip Sci			2014		
41409	25380642	Li J., Dai X., Li L., Jiao Z., Huang Q.	Metabolism of Reactive Oxygen Species in Cytoplasmic Male Sterility of Rice by Marking Upmost Pulvinus Interval.	Appl. Biochem. Biotechnol.			2014		
41410	25371505	Ueda Y., Frimpong F., Qi Y., Matthus E., Wu L., H?ller S., Kraska T., Frei M.	Genetic dissection of ozone tolerance in rice (Oryza sativa L.) by a genome-wide association study.	J. Exp. Bot.			2014		
41411	25399019	J?st M., Esfeld K., Burian A., Cannarozzi G., Chanyalew S., Kuhlemeier C., Assefa K., Tadele Z.	Semi-dwarfism and lodging tolerance in tef (Eragrostis tef) is linked to a mutation in the alpha-Tubulin 1 gene.	J. Exp. Bot.			2014		
41412	25398618	Vieira P., Wantoch S., Lilley C.J., Chitwood D.J., Atkinson H.J., Kamo K.	Expression of a cystatin transgene can confer resistance to root lesion nematodes in Lilium longiflorum cv. 'Nellie White'	Transgenic Res.			2014		
41413	25512028	Wong H.W., Liu Q., Sun S.S.	Biofortification of rice with lysine using endogenous histones.	Plant Mol. Biol.			2014		
41414	25551672	Wang K., Cui K., Liu G., Xie W., Yu H., Pan J., Huang J., Nie L., Shah F., Peng S.	Identification of quantitative trait loci for phosphorus use efficiency traits in rice using a high density SNP map.	BMC Genet.	15(1)	1276	2014		
41415	25471115	Coneva V., Simopoulos C., Casaretto J.A., El-Kereamy A., Guevara D.R., Cohn J., Zhu T., Guo L., Alexander D.C., Bi Y.M., McNicholas P.D., Rothstein S.J.	Metabolic and co-expression network-based analyses associated with nitrate response in rice.	BMC Genomics	15	1056	2014		
41416	25520726	Juntawong P., Sirikhachornkit A., Pimjan R., Sonthirod C., Sangsrakru D., Yoocha T., Tangphatsornruang S., Srinives P.	Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.	Front Plant Sci	5	658	2014		
41417	25511432	Yano K., Aya K., Hirano K., Ordonio R.L., Ueguchi-Tanaka M., Matsuoka M.	Comprehensive Gene Expression Analysis of Rice Aleurone Cells: Probing the Existence of an Alternative Gibberellin Receptor(s).	Plant Physiol.			2014		
41418	25279141	Zamani Babgohari M., Ebrahimie E., Niazi A.	In silico analysis of high affinity potassium transporter (HKT) isoforms in different plants.	Aquat Biosyst	10	9	2014		
41419	25228384	Yan J., Zhang H., Zheng Y., Ding Y.	Comparative expression profiling of miRNAs between the cytoplasmic male sterile line MeixiangA and its maintainer line MeixiangB during rice anther development.	Planta			2014		
41420	25231963	Sudo E., Suzuki Y., Makino A.	Whole-Plant Growth and N Utilization in Transgenic Rice Plants with Increased or Decreased Rubisco Content under Different CO2 Partial Pressures.	Plant Cell Physiol.	55(11)	1905-11	2014		
41421	25188286	Fernandez J., Marroquin-Guzman M., Wilson R.A.	Evidence for a transketolase-mediated metabolic checkpoint governing biotrophic growth in rice cells by the blast fungus Magnaporthe oryzae.	PLoS Pathog.	10(9)	e1004354	2014		
41422	25069855	Paul S., Ali N., Datta S.K., Datta K.	Development of an iron-enriched high-yieldings indica rice cultivar by introgression of a high-iron trait from transgenic iron-biofortified rice.	Plant Foods Hum Nutr	69(3)	203-8	2014		
41423	25183458	Magbanua Z.V., Arick M., Buza T., Hsu C.Y., Showmaker K.C., Chouvarine P., Deng P., Peterson D.G., Lu S.	Transcriptomic dissection of the rice-Burkholderia glumae interaction.	BMC Genomics	15	755	2014		
41424	25231964	Han C., He D., Li M., Yang P.	In-depth proteomic analysis of rice embryo reveals its important roles in seed germination.	Plant Cell Physiol.	55(10)	1826-47	2014		
41425	25261161	Arora K., Rai A.K., Gupta S.K., Singh P.K., Narula A., Sharma T.R.	Phenotypic expression of blast resistance gene Pi54 is not affected by its chromosomal position.	Plant Cell Rep.			2014		
41426	25183745	Byeon Y., Yool Lee H., Choi D.W., Back K.	Chloroplast-encoded serotonin N-acetyltransferase in the red alga Pyropia yezoensis: gene transition to the nucleus from chloroplasts.	J. Exp. Bot.			2014		
41427	25105804	Ji Z.Y., Xiong L., Zou L.F., Li Y.R., Ma W.X., Liu L., Zakria M., Ji G.H., Chen G.Y.	avrXa7-Xa7 mediated defense in rice can be suppressed by transcriptional activator-like effectors tal6 and TAL11a from Xanthomonas oryzae pv. oryzicola.	Mol. Plant Microbe Interact.	27(9)	983-95	2014		
41428	25200087	Zhou H., Liu B., Weeks D.P., Spalding M.H., Yang B.	Large chromosomal deletions and heritable small genetic changes induced by CRISPR/Cas9 in rice.	Nucleic Acids Res.	42(17)	10903-14	2015		
41429	25197968	Jiang S.Y., Vanitha J., Bai Y., Ramachandran S.	A novel binary T-vector with the GFP reporter gene for promoter characterization.	PLoS ONE	9(9)	e107328	2014		
41430	25375147	Han Y., Meng J., Chen J., Cai W., Wang Y., Zhao J., He Y., Feng Y., Hua H.	Bt Rice Expressing Cry2Aa Does Not Harm Cyrtorhinus lividipennis, a Main Predator of the Nontarget Herbivore Nilapavarta lugens.	PLoS ONE	9(11)	e112315	2014		
41431	25386911	Shen C., Yue R., Yang Y., Zhang L., Sun T., Tie S., Wang H.	OsARF16 Is Involved in Cytokinin-Mediated Inhibition of Phosphate Transport and Phosphate Signaling in Rice (Oryza sativa L.).	PLoS ONE	9(11)	e112906	2014		
41432	25399831	Zhang X., Dong W., Sun J., Feng F., Deng Y., He Z., Oldroyd G.E., Wang E.	The receptor kinase CERK1 has dual functions in symbiosis and immunity signalling.	Plant J.			2014		
41433	25385701	Wang C., Zhang X., Fan Y., Gao Y., Zhu Q., Zheng C., Qin T., Li Y., Che J., Zhang M., Yang B., Liu Y., Zhao K.	Xa23 is an executor R protein and confers broad-spectrum disease resistance in rice.	Mol Plant			2014	XA23	Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
41434	25367203	Song H., He X., Zou S., Zhang T., Luo Y., Huang K., Zhu Z., Xu W.	A 90-day subchronic feeding study of genetically modified rice expressing Cry1Ab protein in Sprague-Dawley rats.	Transgenic Res.			2014		
41435	25367283	Fekih R., Tamiru M., Kanzaki H., Abe A., Yoshida K., Kanzaki E., Saitoh H., Takagi H., Natsume S., Undan J.R., Undan J., Terauchi R.	The rice (Oryza sativa L.) lesion mimic RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response.	Mol. Genet. Genomics			2014	LRD6-6 	LMR
41436	25393516	Araki R., Kousaka K., Namba K., Murata Y., Murata J.	2'-Deoxymugineic acid promotes growth of rice (Oryza sativa L.) by orchestrating iron and nitrate uptake processes under high pH conditions.	Plant J.			2014		
41437	25381289	Yano K., Ookawa T., Aya K., Ochiai Y., Hirasawa T., Ebitani T., Takarada T., Yano M., Yamamoto T., Fukuoka S., Wu J., Ando T., Ordonio R.L., Hirano K., Matsuoka M.	Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism.	Mol Plant			2014		
41438	25399020	Wang Z., Wang Y., Hong X., Hu D., Liu C., Yang J., Li Y., Huang Y., Feng Y., Gong H., Li Y., Fang G., Tang H., Li Y.	Functional inactivation of UDP-N-acetylglucosamine pyrophosphorylase 1 (UAP1) induces early leaf senescence and defence responses in rice.	J. Exp. Bot.			2014	SPL29,UAP2	UAP1, OsUAP1,OsUAP2
41439	25392068	Endo M., Mikami M., Toki S.	Multi-gene knockout utilizing off-target mutations of the CRISPR/Cas9 system in rice.	Plant Cell Physiol.			2014		
41440	25402171	Hsu Y.W., Wang H.J., Hsieh M.H., Hsieh H.L., Jauh G.Y.	Arabidopsis mTERF15 Is Required for Mitochondrial nad2 Intron 3 Splicing and Functional Complex I Activity.	PLoS ONE	9(11)	e112360	2014		
41441	25391545	Dong Q., Jiang H., Xu Q., Li X., Peng X., Yu H., Xiang Y., Cheng B.	Cloning and Characterization of a Multifunctional Promoter from Maize (Zea mays L.).	Appl. Biochem. Biotechnol.			2014		
41442	25534925	Hirabayashi H., Sasaki K., Kambe T., Gannaban R.B., Miras M.A., Mendioro M.S., Simon E.V., Lumanglas P.D., Fujita D., Takemoto-Kuno Y., Takeuchi Y., Kaji R., Kondo M., Kobayashi N., Ogawa T., Ando I., Jagadish K.S., Ishimaru T.	qEMF3, a novel QTL for the early-morning flowering trait from wild rice, Oryza officinalis, to mitigate heat stress damage at flowering in rice, O. sativa.	J. Exp. Bot.			2014		
41443	25492220	Lin J., Cheng Z., Xu M., Huang Z., Yang Z., Huang X., Zheng J., Lin T.	Genome re-sequencing and bioinformatics analysis of a nutraceutical rice.	Mol. Genet. Genomics			2014		
41444	25522878	Ding Z., Lin Z., Li Q., Wu H., Xiang C., Wang J.	DNL1, encodes cellulose synthase-like D4, is a major QTL for plant height and leaf width in rice (Oryza sativa L.).	Biochem. Biophys. Res. Commun.			2014		
41445	25473841	Guo M., Wang R., Wang J., Hua K., Wang Y., Liu X., Yao S.	ALT1, a Snf2 Family Chromatin Remodeling ATPase, Negatively Regulates Alkaline Tolerance through Enhanced Defense against Oxidative Stress in Rice.	PLoS ONE	9(12)	e112515	2014		
41446	25517485	Zhang Y.C., Liao J.Y., Li Z.Y., Yu Y., Zhang J.P., Li Q.F., Qu L.H., Shu W.S., Chen Y.Q.	Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice.	Genome Biol.	15(12)	512	2014		
41447	25482754	Siddique A.B., Ara I., Islam S.M., Tuteja N.	Effect of air desiccation and salt stress factors on in vitro regeneration of rice (Oryza sativa L.).	Plant Signal Behav	9(12)	e977209	2014		
41448	25432789	Dong W., Cheng Z.J., Lei C.L., Wang X.L., Wang J.L., Wang J., Wu F.Q., Zhang X., Guo X.P., Zhai H.Q., Wan J.M.	Overexpression of Folate Biosynthesis Genes in Rice (Oryza sativa L.) and Evaluation of Their Impact on Seed Folate Content.	Plant Foods Hum Nutr	69(4)	379-85	2014		
41449	25270163	Wang Z., Cao H., Chen F., Liu Y.	The roles of histone acetylation in seed performance and plant development.	Plant Physiol. Biochem.	84C	125-133	2014		
41450	25243048	Mimura M., Itoh J.	Genetic interaction between rice PLASTOCHRON genes and the gibberellin pathway in leaf development.	Rice (N Y)	7(1)	25	2014		
41451	25231250	Qian B., Li X., Liu X., Wang M.	Improved oxidative tolerance in suspension-cultured cells of C4 -pepctransgenic rice by H2 O2 and Ca(2+) under PEG-6000.	J Integr Plant Biol			2014		
41452	25059749	Agarrwal R., Bentur J.S., Nair S.	Gas chromatography mass spectrometry based metabolic profiling reveals biomarkers involved in rice-gall midge interactions.	J Integr Plant Biol	56(9)	837-48	2014		
41453	25342550	Zulfugarov I.S., Tovuu A., Eu Y.J., Dogsom B., Poudyal R., Nath K., Hall M., Banerjee M., Yoon U., Moon Y.H., An G., Jansson S., Lee C.H.	Production of superoxide from Photosystem II in a rice ( Oryza sativa L.) mutant lacking PsbS.	BMC Plant Biol.	14(1)	242	2014		
41454	25281725	Singh S., Mackill D.J., Ismail A.M.	Physiological bases of tolerance to complete submergence in rice involves other genetic factors in addition to Sub1.	AoB Plants			2014		
41455	25358745	Ambavaram M.M., Basu S., Krishnan A., Ramegowda V., Batlang U., Rahman L., Baisakh N., Pereira A.	Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.	Nat Commun	5	5302	2014		
41456	25330210	Matus J.T., Aquea F., Espinoza C., Vega A., Cavallini E., Santo S.D., Ca??n P., de la Guardia AR., Serrano J., Tornielli G.B., Arce-Johnson P.	Inspection of the Grapevine BURP Superfamily Highlights an Expansion of RD22 Genes with Distinctive Expression Features in Berry Development and ABA-Mediated Stress Responses.	PLoS ONE	9(10)	e110372	2014		
41457	25435546	Kurotani A., Yamada Y., Shinozaki K., Kuroda Y., Sakurai T.	Plant-PrAS: A Database of Physicochemical and Structural Properties and Novel Functional Regions in Plant Proteomes.	Plant Cell Physiol.			2014		
41458	25417716	Raghuram B., Sheikh A.H., Rustagi Y., Sinha A.K.	MicroRNA biogenesis factor DRB1 is a phosphorylation target of mitogen activated protein kinase MPK3 in both rice and Arabidopsis.	FEBS J.			2014		
41459	25506347	Cesari S., Bernoux M., Moncuquet P., Kroj T., Dodds P.N.	A novel conserved mechanism for plant NLR protein pairs: the "integrated decoy" hypothesis.	Front Plant Sci	5	606	2014		
41460	25531538	Saha J., Sengupta A., Gupta K., Gupta B.	Molecular phylogenetic study and expression analysis of ATP-binding cassette transporter gene family in Oryza sativa in response to salt stress.	Comput Biol Chem	54C	18-32	2014		
41461	25435547	Murcha M.W., Narsai R., Devenish J., Kubiszewski-Jakubiak S., Whelan J.	MPIC: A Mitochondrial Protein Import Components Database for Plant and Non-Plant Species.	Plant Cell Physiol.			2014		
41462	25416794	Wagatsuma T., Khan M.S., Watanabe T., Maejima E., Sekimoto H., Yokota T., Nakano T., Toyomasu T., Tawaraya K., Koyama H., Uemura M., Ishikawa S., Ikka T., Ishikawa A., Kawamura T., Murakami S., Ueki N., Umetsu A., Kannari T.	Higher sterol content regulated by CYP51 with concomitant lower phospholipid contents in membranes is a common strategy for aluminium tolerance in several plant species.	J. Exp. Bot.			2014		
41463	25429427	Zhao J., Yang Y., Kang Z.	Proteomic analysis of rice nonhost resistance to Puccinia striiformis f. sp. tritici using two-dimensional electrophoresis.	Int J Mol Sci	15(12)	21644-59	2014		
41464	25420550	Yang Z., Zhou Y., Huang J., Hu Y., Zhang E., Xie Z., Ma S., Gao Y., Song S., Xu C., Liang G.	Ancient horizontal transfer of transaldolase-like protein gene and its role in plant vascular development.	New Phytol.			2014		
41465	25501185	Huan J., Bao Y.M., Wu Y.Y., Zeng G.Y., He W.W., Dang L.L., Wang J.F., Zhang H.S.	Identification of quantitative trait loci conferring blast resistance in Bodao, a japonica rice landrace.	Genet. Mol. Res.	13(4)	9756-65	2014		
41466	25431424	Kwon C.T., Koo B.H., Kim D., Yoo S.C., Paek N.C.	Casein Kinases I and 2alpha Phosphorylate Oryza Sativa Pseudo-Response Regulator 37 (OsPRR37) in Photoperiodic Flowering in Rice.	Mol. Cells			2014	GHD7,HD2,HD6,HD16	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,Hd16, EL1, CK1, Hd16/CKI, Hd16/EL1
41467	25501189	Bevitori R., Oliveira M.B., Grossi-de-S? MF., Lanna A.C., da Silveira RD., Petrofeza S.	Selection of optimized candidate reference genes for qRT-PCR normalization in rice (Oryza sativa L.) during Magnaporthe oryzae infection and drought.	Genet. Mol. Res.	13(4)	9795-805	2014		
41468	25413289	Srivastava R.K., Pandey P., Rajpoot R., Rani A., Gautam A., Dubey R.S.	Exogenous application of calcium and silica alleviates cadmium toxicity by suppressing oxidative damage in rice seedlings.	Protoplasma			2014		
41469	25418692	Du H., Chang Y., Huang F., Xiong L.	gid1 modulates stomatal response and submergence tolerance involving ABA and GA signaling in rice.	J Integr Plant Biol			2014	GID1,NCED2,NCED3,_,_,_,CKX4,_,NCED1,_	gid1, OsGID1, Thl, Os GID1,OSNCED2, OsNCED2, OsNCED5, NCED5,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsPSY, PSY, OsPSY3, PSY3,YDA2, OsYDA2,OsbHLH053, bHLH053, OsSPCH2, SPCH2,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsSDD1, SDD1, OsSub26, SUB26,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsTMM, TMM
41470	25319482	Fan J., Guo X.Y., Li L., Huang F., Sun W.X., Li Y., Huang Y.Y., Xu Y.J., Shi J., Lei Y., Zheng A.P., Wang W.M.	Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.	J Integr Plant Biol			2014		
41471	25330236	Ma B., Yin C.C., He S.J., Lu X., Zhang W.K., Lu T.G., Chen S.Y., Zhang J.S.	Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) Seedlings.	PLoS Genet.	10(10)	e1004701	2014		
41472	25280352	Lin D., Jiang Q., Zheng K., Chen S., Zhou H., Gong X., Xu J., Teng S., Dong Y.	Mutation of the rice ASL2 gene encoding plastid ribosomal protein L21 causes chloroplast developmental defects and seedling death.	Plant Biol (Stuttg)			2014		
41473	25307286	Liu Z., Cheng Q., Sun Y., Dai H., Song G., Guo Z., Qu X., Jiang D., Liu C., Wang W., Yang D.	A SNP in OsMCA1 responding for a plant architecture defect by deactivation of bioactive GA in rice.	Plant Mol. Biol.			2014		
41474	25324853	Vasudevan K., Vera Cruz CM., Gruissem W., Bhullar N.K.	Large scale germplasm screening for identification of novel rice blast resistance sources.	Front Plant Sci	5	505	2014		
41475	25273267	Tang M., Mao D., Xu L., Li D., Song S., Chen C.	Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings.	BMC Genomics	15	835	2014		
41476	25344813	Zhang Y., van Dijk AD., Scaffidi A., Flematti G.R., Hofmann M., Charnikhova T., Verstappen F., Hepworth J., van der Krol S., Leyser O., Smith S.M., Zwanenburg B., Al-Babili S., Ruyter-Spira C., Bouwmeester H.J.	Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis.	Nat. Chem. Biol.			2014		
41477	25366771	Ma Y., Guo J.W., Bade R., Men Z.H., Hasi A.	Genome-wide identification and phylogenetic analysis of the SBP-box gene family in melons.	Genet. Mol. Res.	13(4)	8794-806	2014		
41478	25336565	Liu W., Frick M., Huel R., Nykiforuk C.L., Wang X., Gaudet D.A., Eudes F., Conner R.L., Kuzyk A., Chen Q., Kang Z., Laroche A.	Stripe Rust Resistance Gene Yr10 Encodes an Evolutionary-conserved and Unique CC-NBS-LRR Sequence in Wheat.	Mol Plant			2014		
41479	25336682	Sandhu N., Torres R.O., Cruz M.T., Maturan P.C., Jain R., Kumar A., Henry A.	Traits and QTLs for development of dry direct-seeded rainfed rice varieties.	J. Exp. Bot.			2014		
41480	25311959	Wang M., Hua X., Zhang Q., Yang Y., Shi H., Wang M.	Enantioselective Degradation of Metalaxyl in Grape, Tomato, and Rice Plants.	Chirality			2014		
41481	25428432	Jiang S.Y., Vanitha J., Bai Y., Ramachandran S.	Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level.	BMC Plant Biol.	14(1)	331	2014		
41482	25472708	Atwell B.J., Greenway H., Colmer T.D.	Efficient use of energy in anoxia-tolerant plants with focus on germinating rice seedlings.	New Phytol.			2014		
41483	25545811	Xu H., Wei Y., Zhu Y., Lian L., Xie H., Cai Q., Chen Q., Lin Z., Wang Z., Xie H., Zhang J.	Antisense suppression of LOX3 gene expression in rice endosperm enhances seed longevity.	Plant Biotechnol. J.			2014		
41484	25479006	Xu X., Bai H., Liu C., Chen E., Chen Q., Zhuang J., Shen B.	Genome-Wide Analysis of MicroRNAs and Their Target Genes Related to leaf senescence of Rice.	PLoS ONE	9(12)	e114313	2014		
41485	25488398	Wang R., Lu L., Pan X., Hu Z., Ling F., Yan Y., Liu Y., Lin Y.	Functional analysis of OsPGIP1 in rice sheath blight resistance.	Plant Mol. Biol.	87(1-2)	181-91	2015		
41486	25553855	Miah G., Rafii M.Y., Ismail M.R., Puteh A.B., Rahim H.A., Latif M.A.	Recurrent parent genome recovery analysis in a marker-assisted backcrossing program of rice (Oryza sativa L.).	C. R. Biol.			2014		
41487	25576000	Shen C., Yue R., Sun T., Zhang L., Yang Y., Wang H.	OsARF16, a transcription factor regulating auxin redistribution, is required for iron deficiency response in rice (Oryza sativa L.).	Plant Sci.	231	148-58	2015		
41488	25540933	Li Y., Ye Z., Nie Y., Zhang J., Wang G.L., Wang Z.	Comparative phosphoproteome analysis of Magnaporthe oryzae-responsive proteins in susceptible and resistant rice cultivars.	J Proteomics	115C	66-80	2014		
41489	25443837	Ma H., Feng L., Chen Z., Chen X., Zhao H., Xiang Y.	Genome-wide identification and expression analysis of the IQD gene family in Populus trichocarpa.	Plant Sci.	229	96-110	2014		
41490	25504197	Ranjan A., Vadassery J., Patel H.K., Pandey A., Palaparthi R., Mith?fer A., Sonti R.V.	Upregulation of jasmonate biosynthesis and jasmonate-responsive genes in rice leaves in response to a bacterial pathogen mimic.	Funct. Integr. Genomics			2014		
41491	25532120	Mekawy A.M., Assaha D.V., Yahagi H., Tada Y., Ueda A., Saneoka H.	Growth, physiological adaptation, and gene expression analysis of two Egyptian rice cultivars under salt stress.	Plant Physiol. Biochem.	87C	17-25	2014		
41492	25442012	Coudert Y., Le V.A., Adam H., B?s M., Vignols F., Jouannic S., Guiderdoni E., Gantet P.	Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.	New Phytol.			2014		
41493	25528301	Zhang Z., Mao X., Ou J., Ye N., Zhang J., Peng X.	Distinct photorespiratory reactions are preferentially catalyzed by glutamate:glyoxylate and serine:glyoxylate aminotransferases in rice.	J. Photochem. Photobiol. B, Biol.	142C	110-117	2014		
41494	25439309	Zhang Y., Tan L., Zhu Z., Yuan L., Xie D., Sun C.	TOND1 confers tolerance to nitrogen deficiency in rice.	Plant J.			2014	GLT2,TOND1,GS2,GLT1	OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,,OsGS2, GLN2, RGS31,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1
41495	25520407	Shi X., Sun X., Zhang Z., Feng D., Zhang Q., Han L., Wu J., Lu T.	GLUCAN SYNTHASE-LIKE 5 (GSL5) plays an essential role in male fertility by regulating callose metabolism during microsporogenesis in rice.	Plant Cell Physiol.			2014		
41496	25270162	Kang S.M., Radhakrishnan R., Khan A.L., Kim M.J., Park J.M., Kim B.R., Shin D.H., Lee I.J.	Gibberellin secreting rhizobacterium, Pseudomonas putida H-2-3 modulates the hormonal and stress physiology of soybean to improve the plant growth under saline and drought conditions.	Plant Physiol. Biochem.	84C	115-124	2014		
41497	25224158	Chen H., Li G., K?llner TG., Jia Q., Gershenzon J., Chen F.	Positive Darwinian selection is a driving force for the diversification of terpenoid biosynthesis in the genus Oryza.	BMC Plant Biol.	14(1)	239	2014		
41498	25187853	Yu C., Chen H., Tian F., Leach J.E., He C.	Differentially-expressed genes in rice infected by Xanthomonas oryzae pv. oryzae relative to a flagellin-deficient mutant reveal potential functions of flagellin in host-pathogen interactions.	Rice (N Y)	7(1)	20	2014		
41499	25201296	Murai M., Hata T., Kosumi T., Seike H.	Effects of a rice major gene Ur1 (Undulate rachis -1) on panicle and grain traits.	Hereditas	151(4-5)	61-72	2014		
41500	24983886	Shimane M., Ueno Y., Morisaki K., Oogami S., Natsume M., Hayashi K., Nozaki H., Kawaide H.	Molecular evolution of the substrate specificity of ent-kaurene synthases to adapt to gibberellin biosynthesis in land plants.	Biochem. J.	462(3)	539-46	2014		
41501	25200982	Chen Y.S., Lo S.F., Sun P.K., Lu C.A., Ho T.H., Yu S.M.	A late embryogenesis abundant protein HVA1 regulated by an inducible promoter enhances root growth and abiotic stress tolerance in rice without yield penalty.	Plant Biotechnol. J.			2014		
41502	25184027	Tu Y., Jiang A., Gan L., Hossain M., Zhang J., Peng B., Xiong Y., Song Z., Cai D., Xu W., Zhang J., He Y.	Genome duplication improves rice root resistance to salt stress.	Rice (N Y)	7(1)	15	2014		
41503	25223543	Chen J.Y., Guo L., Ma H., Chen Y.Y., Zhang H.W., Ying J.Z., Zhuang J.Y.	Fine mapping of qHd1, a minor heading date QTL with pleiotropism for yield traits in rice (Oryza sativa L.).	Theor. Appl. Genet.	127(11)	2515-24	2014		
41504	25327517	Hara T., Katoh H., Ogawa D., Kagaya Y., Sato Y., Kitano H., Nagato Y., Ishikawa R., Ono A., Kinoshita T., Takeda S., Hattori T.	Rice SNF2 family helicase ENL1 is essential for syncytial endosperm development.	Plant J.			2014	_,ENL1	ENL1L,enl1
41505	25341369	Onogi A., Ideta O., Inoshita Y., Ebana K., Yoshioka T., Yamasaki M., Iwata H.	Exploring the areas of applicability of whole-genome prediction methods for Asian rice (Oryza sativa L.).	Theor. Appl. Genet.			2014		
41506	25326264	Qin D., Wang F., Geng X., Zhang L., Yao Y., Ni Z., Peng H., Sun Q.	Overexpression of heat stress-responsive TaMBF1c, a wheat (Triticum aestivum L.) Multiprotein Bridging Factor, confers heat tolerance in both yeast and rice.	Plant Mol. Biol.			2014		
41507	25351627	Wang X., Jiang D., Yang D.	Fast-Tracking Determination of Homozygous Transgenic Lines and Transgene Stacking Using a Reliable Quantitative Real-Time PCR Assay.	Appl. Biochem. Biotechnol.			2014		
41508	25250906	Lee H.Y., Byeon Y., Lee K., Lee H.J., Back K.	Cloning of Arabidopsis Serotonin N-acetyltransferase and its role with caffeic acid O-methyltransferase in the biosynthesis of melatonin in vitro despite their different subcellular localizations.	J. Pineal Res.	57(4)	418-26	2014		
41509	25298209	Ookawa T., Inoue K., Matsuoka M., Ebitani T., Takarada T., Yamamoto T., Ueda T., Yokoyama T., Sugiyama C., Nakaba S., Funada R., Kato H., Kanekatsu M., Toyota K., Motobayashi T., Vazirzanjani M., Tojo S., Hirasawa T.	Increased lodging resistance in long-culm, low-lignin gh2 rice for improved feed and bioenergy production.	Sci Rep	4	6567	2014		
41510	25297540	Sineshchekov V., Sudnitsin A., Ad?m E., Sch?fer E., Viczi?n A.	phyA-GFP is spectroscopically and photochemically similar to phyA and comprises both its native types, phyA' and phyA''	Photochem. Photobiol. Sci.			2014		
41511	25333312	Zhao Q., Liu M., Tan M., Gao J., Shen Z.	Expression of Cry1Ab and Cry2Ab by a Polycistronic Transgene with a Self-Cleavage Peptide in Rice.	PLoS ONE	9(10)	e110006	2014		
41512	25344844	Bagautdinov B., Matsuura Y., Yamamoto H., Sawano M., Ogasahara K., Takehira M., Kunishima N., Katoh E., Yutani K.	Thermodynamic analysis of unusually thermostable CutA1 protein from human brain and its protease susceptibility.	J. Biochem.			2014		
41513	25344821	Malviya N., Gupta S., Singh V.K., Yadav M.K., Bisht N.C., Sarangi B.K., Yadav D.	Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.).	Mol. Biol. Rep.			2014		
41514	25368624	Saika H., Nishizawa-Yokoi A., Toki S.	The non-homologous end-joining pathway is involved in stable transformation in rice.	Front Plant Sci	5	560	2014		
41515	25505034	Ohyanagi H., Takano T., Terashima S., Kobayashi M., Kanno M., Morimoto K., Kanegae H., Sasaki Y., Saito M., Asano S., Ozaki S., Kudo T., Yokoyama K., Aya K., Suwabe K., Suzuki G., Aoki K., Kubo Y., Watanabe M., Matsuoka M., Yano K.	Plant Omics Data Center: An Integrated Web Repository for Interspecies Gene Expression Networks with NLP-Based Curation.	Plant Cell Physiol.			2014		
41516	25537885	Chhapekar S., Raghavendrarao S., Pavan G., Ramakrishna C., Singh V.K., Phanindra M.L., Dhandapani G., Sreevathsa R., Ananda Kumar P.	Transgenic rice expressing a codon-modified synthetic CP4-EPSPS confers tolerance to broad-spectrum herbicide, glyphosate.	Plant Cell Rep.			2014		
41517	25512054	Pan Y., Li Q., Wang Z., Wang Y., Ma R., Zhu L., He G., Chen R.	Genes associated with thermosensitive genic male sterility in rice identified by comparative expression profiling.	BMC Genomics	15	1114	2014		
41518	25480961	Gu X.Y., Zhang J., Ye H., Zhang L., Feng J.	Genotyping of Endosperms To Determine seed dormancy Genes Regulating Germination Through Embryonic, Endospermic or Maternal Tissues in Rice.	G3 (Bethesda)			2014		
41519	25438645	Fang C., Li Y., Li C., Li B., Ren Y., Zheng H., Zeng X., Shen L., Lin W.	Identification and comparative analysis of microRNAs in barnyardgrass (Echinochloa crus-galli) in response to rice allelopathy.	Plant Cell Environ.			2014		
41520	25487270	Zhao D., Qiao Z., Cheng X., Wang J., Jiao C., Sun B.	Molecular identification of one event of Ds excision and re-insertion at two loci in rice genome.	Yi Chuan	36(12)	1249-55	2014		
41521	25572229	Jin S., Sun D., Wang J., Li Y., Wang X., Liu S.	Expression of the rgMT gene, encoding for a rice metallothionein-like protein in Saccharomyces cerevisiae and Arabidopsis thaliana.	J. Genet.	93(3)	709-18	2014		
41522	25524588	Wu N., Zhu Y., Song W., LI Y., Yan Y., Hu Y.	Unusual tandem expansion and positive selection in subgroups of the plant GRAS transcription factor superfamily.	BMC Plant Biol.	14(1)	373	2014		
41523	25532750	Fukuda A., Sugimoto K., Ando T., Yamamoto T., Yano M.	Chromosomal locations of a gene underlying heat-accelerated brown spot formation and its suppressor genes in rice.	Mol. Genet. Genomics			2014		
41524	25252199	Pengthaisong S., Ketudat Cairns JR.	Effects of active site cleft residues on oligosaccharide binding, hydrolysis, and glycosynthase activities of rice BGlu1 and its mutants.	Protein Sci.			2014		
41525	25227951	Urano D., Colaneri A., Jones A.M.	Galpha modulates salt-induced cellular senescence and cell division in rice and maize.	J. Exp. Bot.			2014		
41526	25208036	Park S., Byeon Y., Lee H.Y., Kim Y.S., Ahn T., Back K.	Cloning and characterization of a serotonin N-acetyltransferase from a gymnosperm, loblolly pine (Pinus taeda).	J. Pineal Res.	57(3)	348-55	2014		
41527	25231087	Song B.K., Chuah T.S., Tam S.M., Olsen K.M.	Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia.	Mol. Ecol.	23(20)	5003-17	2014		
41528	25306526	Zulfugarov I.S., Tovuu A., Lee C.H.	Acceleration of cyclic electron flow in rice plants (Oryza sativa L.) deficient in the PsbS protein of Photosystem II.	Plant Physiol. Biochem.	84C	233-239	2014		
41529	25528599	Zhu X.F., Wang Z.W., Wan J.X., Sun Y., Wu Y.R., Li G.X., Shen R.F., Zheng S.J.	Pectin enhances rice (Oryza sativa) root phosphorus remobilization.	J. Exp. Bot.			2014		
41530	25479236	Lei X., Xiao Y., Xia W., Mason A.S., Yang Y., Ma Z., Peng M.	RNA-Seq Analysis of Oil Palm under Cold Stress Reveals a Different C-Repeat Binding Factor (CBF) Mediated Gene Expression Pattern in Elaeis guineensis Compared to Other Species.	PLoS ONE	9(12)	e114482	2014		
41531	25501945	Betterle N., Ballottari M., Baginsky S., Bassi R.	High light-dependent phosphorylation of Photosystem II inner antenna CP29 in monocots is STN7-independent and enhances Non Photochemical Quenching.	Plant Physiol.			2014	_,STN7,_	OsPP2C05, PP2C05, OsPP2C5, PP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38,OsSTN7,CP29, OsCP29, LHCB4, Lhcb4 
41532	25232936	Shan Q., Wang Y., Li J., Gao C.	Genome editing in rice and wheat using the CRISPR/Cas system.	Nat Protoc	9(10)	2395-410	2014		
41533	25223260	Yi J., An S., An G.	OsMLO12, encoding seven transmembrane proteins, is involved with pollen hydration in rice.	Plant Reproduction			2014		
41534	25148576	Liu J.F., Ding J., Yuan B.F., Feng Y.Q.	Magnetic solid phase extraction coupled with in situ derivatization for the highly sensitive determination of acidic phytohormones in rice leaves by UPLC-MS/MS.	Analyst	139(21)	5605-13	2014		
41535	25320554	Htun T.M., Inoue C., Chhourn O., Ishii T., Ishikawa R.	Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon.	Breed. Sci.	64(3)	199-205	2014		
41536	25326616	Thurber C.S., Reagon M., Olsen K.M., Jia Y., Caicedo A.L.	The evolution of flowering strategies in US weedy rice.	Am. J. Bot.	101(10)	1737-47	2014	HD3A,SE1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
41537	25365207	Zhang J., Huang W., Zhou Q.	Reflectance Variation within the In-Chlorophyll Centre Waveband for Robust Retrieval of Leaf Chlorophyll Content.	PLoS ONE	9(11)	e110812	2014		
41538	25528448	Frei M.	Breeding of ozone resistant rice: Relevance, approaches and challenges.	Environ. Pollut.	197C	144-155	2014		
41539	25474210	Wang H., Devos K.M., Bennetzen J.L.	Recurrent Loss of Specific Introns during Angiosperm Evolution.	PLoS Genet.	10(12)	e1004843	2014		
41540	25301195	Yesmin N., Elias S.M., Rahman M.S., Haque T., Mahbub Hasan AK., Seraj Z.I.	Unique Genotypic Differences Discovered among Indigenous Bangladeshi Rice Landraces.	International Journal of Genomics	2014	210328	2014		
41541	25270231	Kato Y., Collard B.C., Septiningsih E.M., Ismail A.M.	Physiological analyses of traits associated with tolerance of long-term partial submergence in rice.	AoB Plants	6		2014		
41542	25202124	Vergara G.V., Nugraha Y., Esguerra M.Q., Mackill D.J., Ismail A.M.	Variation in tolerance of rice to long-term stagnant flooding that submerges most of the shoot will aid in breeding tolerant cultivars.	AoB Plants	6		2014		
41543	25239066	Guo H.M., Li H.C., Zhou S.R., Xue H.W., Miao X.X.	Cis-12-Oxo-Phytodienoic Acid Stimulates Rice Defense Response to a Piercing-Sucking Insect.	Mol Plant			2014		
41544	25286109	Xia H., Zheng X., Chen L., Gao H., Yang H., Long P., Rong J., Lu B., Li J., Luo L.	Genetic Differentiation Revealed by Selective Loci of Drought-Responding EST-SSRs between Upland and Lowland Rice in China.	PLoS ONE	9(10)	e106352	2014		
41545	25295980	Yang W., Guo Z., Huang C., Duan L., Chen G., Jiang N., Fang W., Feng H., Xie W., Lian X., Wang G., Luo Q., Zhang Q., Liu Q., Xiong L.	Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice.	Nat Commun	5	5087	2014		
41546	25360796	Zhang P., Liu X., Tong H., Lu Y., Li J.	Association Mapping for Important Agronomic Traits in Core Collection of Rice (Oryza sativa L.) with SSR Markers.	PLoS ONE	9(10)	e111508	2014		
41547	25326901	Yoeun S., Kim J.I., Han O.	Cellular localization and detergent dependent oligomerization of rice allene oxide synthase-1.	J. Plant Res.			2014		
41548	25378689	Endo M., Kumagai M., Motoyama R., Sasaki-Yamagata H., Mori-Hosokawa S., Hamada M., Kanamori H., Nagamura Y., Katayose Y., Itoh T., Toki S.	Whole genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting.	Plant Cell Physiol.			2014		
41549	25432597	Cabral A.L., Jordan M.C., McCartney C.A., You F.M., Humphreys D., MacLachlan R., Pozniak C.J.	Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.).	BMC Plant Biol.	14(1)	340	2014		
41550	25429024	Matsubara K., Yamamoto E., Mizobuchi R., Yonemaru J., Yamamoto T., Kato H., Yano M.	Hybrid Breakdown Caused by Epistasis-Based Recessive Incompatibility in a Cross of Rice (Oryza sativa L.).	J. Hered.	106(1)	113-22			
41551	25434685	Songyikhangsuthor K., Guo Z., Wang N., Zhu X., Xie W., Mou T., Xiong L.	Natural variation in the sequence of SNAC1 and its expression level polymorphism in rice Germplasms under drought stress.	J Genet Genomics	41(11)	609-12	2014		
41552	25423588	Kong F., Li H., Sun P., Zhou Y., Mao Y.	De Novo Assembly and Characterization of the Transcriptome of Seagrass Zostera marina Using Illumina Paired-End Sequencing.	PLoS ONE	9(11)	e112245	2014		
41553	25505850	Jiang C., Cheng Z., Zhang C., Yu T., Zhong Q., Shen J.Q., Huang X.	Proteomic analysis of seed storage proteins in wild rice species of the Oryza genus.	Proteome Sci	12(1)	51	2014		
41554	25522807	Masumura T., Shigemitsu T., Morita S., Satoh S.	Identification of the region of rice 13?kDa prolamin essential for the formation of ER-derived protein bodies using a heterologous expression system.	Biosci. Biotechnol. Biochem.		1-8	2014		
41555	25265195	Zhao X., Wang W., Zhang F., Deng J., Li Z., Fu B.	Comparative metabolite profiling of two rice genotypes with contrasting salt stress tolerance at the seedling stage.	PLoS ONE	9(9)	e108020	2014		
41556	25335927	Amei A., Lee S., Mysore K.S., Jia Y.	Statistical Inference of Selection and Divergence of the Rice Blast Resistance Gene Pi-ta.	G3 (Bethesda)			2014		
41557	25547027	Choudhury B.I., Khan M.L., Dayanandan S.	Genetic relatedness among indigenous rice varieties in the Eastern Himalayan region based on nucleotide sequences of the Waxy gene.	BMC Res Notes	7(1)	953	2014		
41558	25536503	Liu L., Lai Y., Cheng J., Wang L., Du W., Wang Z., Zhang H.	Dynamic quantitative trait locus analysis of seed vigor at three maturity stages in rice.	PLoS ONE	9(12)	e115732	2014		
41559	20637108	Singh A., Giri J., Kapoor S., Akhilesh K Tyagi, Girdhar K Pandey	Protein phosphatase complement in rice: genome-wide identification and transcriptional analysis under abiotic stress conditions and reproductive development.	BMC Genomics	11	435	2010	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,DCW11,_,_,_,_,_,_,_,_,_,BIPP2C1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,XB15,_,_,_,_,_,PP2A-3,_,STR19,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,OSKAPP,_,_,_,_,_,_,_,_,_,_,_,_,PP2A-1,_,_,PP2C1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsPP38,OsPP74,OsPP2C04, PP2C04, OsPP2C4, PP2C4, OsPP8,OsPP2C28, PP2C28, OsPP43,OsPP2C55, PP2C55, OsPP86,OsPP2C23, PP2C23, OsPP34,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9,OsPP2C50, PP2C50, OsPP78, OsABIL3, ABIL3,OsPP104,OsPP52,OsPP83,OsPP119,OsPP100,OsPP77,OsPP2C62, PP2C62, OsPP95,OsPP2C52, PP2C52, OsPP80,OsPP2C42, PP2C42, OsPP67,OsPP5,OsPP47, PP47,OsPP56, PP56, OsPP2Ac-2, PP2Ac-2,OsPP2C56, PP2C56, OsPP87,OsPP2C19, PP2C19, OsPP29,OsPP2C15, PP2C15, OsPP25,OsPP118,OsPP2C59, PP2C59, OsPP91,OsPP2C57, PP2C57, OsPP89,OsPPKL1, PPKL1, qGL3, OsPP54, PP54, GL3.1,DCW11, OsPP2C13, PP2C13, OsPP22,OsPP2C12, PP2C12, OsPP21,OsPP2C66, PP2C66, OsPP102,OsPP53,OsPP2C11, PP2C11, OsPP19,OsPP2C39, PP2C39, OsPP64,OsPP2C74, PP2C74, OsPP120,OsPP2C61, PP2C61, OsPP93,OsPP2C16, PP2C16, OsPP26,OsPP2C10, PP2C10, OsPP18,OsBIPP2C1, OsPP45, PP45,OsPP2C64, PP2C64, OsPP97,OsPP115,OsPP2C01, PP2C01, OsPP2C1, PP2C1, OsPP1, OsPBCP, PBCP ,OsPP2C65, PP2C65, OsPP98,OsPP2C05, PP2C05, OsPP2C5, PP2C5, OsPP9, PPH1, TAP38, PPH1/TAP38,OsPP62, OsSTA117,OsPP2C48, PP2C48, OsPP75,OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2,OsPP2C60, PP2C60, OsPP92,OsPP2C30, PP2C30, OsPP48, PP48,OsPP32,OsPP17,OsPP16,OsPP58,OsPFA-DSP1, OsPP105,OsPP23,OsPP2C51, PP2C51, OsPP79,OsPP2C47, PP2C47, OsPP72,OsPP13, PPP6 ,OsPPKL3, OsPP132,OsPP2C45, PP2C45, OsPP70,OsPP2C02, PP2C02, OsPP2C2, PP2C2, OsPP2,XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsPP14,OsPP2C08, PP2C08, OsPP2C8, PP2C8, OsPP12,OsPP2C78, PP2C78, OsPP131,OsPHS1b, OsPP4, OsSTA14,OsPP2C34, PP2C34, OsPP55, OsBIPP2C2, OsBIPP2C2a, OsBIPP2C2b, OsBIPP2C2c,OsPP2A-3, PP2A3, OsPP20,OsPHS1a, OsPP3,OsStr19, OsPP126,OsPP2C75, PP2C75, OsPP121,OsPP2C72, PP2C72, OsPP114,OsPP2C73, PP2C73, OsPP116,OsPP2C67, PP2C67, OsPP107,OsPP2C70, PP2C70, OsPP110,OsPP2C71, PP2C71, OsPP111,OsPP127, OsPTP1, PTP1,OsPP2C03, PP2C03, OsPP2C3, PP2C3, OsPP7,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPP82,OsPP123,OsPP101,OsPP2C77, PP2C77, OsPP129,OsDsPTP1, OsPP6,OsPP42,OsPP2C37, PP2C37, OsPP61,OsKAPP, OsPP94,OsPP41,OsPP44, PP44,OsPP113,OsPP117,OsPP124,OsPP128,OsPP2C44, PP2C44, OsPP69,OsPP2C46, PP2C46, OsPP71,OsPP2C58, PP2C58, OsPP90,OsPP2C76, PP2C76, OsPP122,OsPFA-DSP2, OsPP39,OsIBR5, IBR5, OsPP85,OsPP2A-1, PP2A1, OsPP88,OsPP103,OsPP2C49, PP2C49, OsPP76,OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPP2C69, PP2C69, OsPP109,OsPP2C22, PP2C22, OsPP33,OsPP2C27, PP2C27, OsPP40,OsPP2C43, PP2C43, OsPP68,OsPP2C41, PP2C41, OsPP66,OsPP2C38, PP2C38, OsPP63,OsPP2C40, PP2C40, OsPP65,OsPP2C36, PP2C36, OsPP60,OsPP2C33, PP2C33, OsPP51,OsPP2C31, PP2C31, OsPP49,OsPP2C32, PP2C32, OsPP50,OsPP2C21, PP2C21, OsPP31,OsPP2C20, PP2C20, OsPP30,OsPP112, PP112, OsPP2Ac-4, PP2Ac-4 ,OsPPKL2, OsPP73,OsPP2C17, PP2C17, OsPP27,OsPP2C29, PP2C29, OsPP46,OsPP2C26, PP2C26, OsPP37,OsPP2C25, PP2C25, OsPP36,OsPP2C14, PP2C14, OsPP24,OsPP2C18, PP2C18, OsPP28,OsPP130,OsPP57,OsPP2C24, PP2C24, OsPP35,OsPP2C07, PP2C07, OsPP2C7, PP2C7, OsPP11, PP11,OsPP2C63, PP2C63, OsPP96,OsPP106,OsPP2C54, PP2C54, OsPP84,OsPP125,OsPP99
41560	19825577	Vij S., Giri J., Prasant Kumar Dansana, Kapoor S., Akhilesh K Tyagi	The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: organization, phylogenetic relationship, and expression during development and stress.	Mol Plant	1(5)	732-50	2008	BSR1,RLCK28,RLCK359,RLCK139,RLCK119,RLCK372,RLCK84,RLCK118,RLCK350,RLCK255,RLCK39,RLCK89,RLCK248,RLCK44,RLCK31,RLCK129,RLCK271,RLCK308,RLCK155,RLCK204,RLCK186,RLCK104,RLCK250,RLCK3,RLCK141,RLCK105,RLCK137,RLCK191,RLCK163,RLCK358,RLCK135,RLCK117,RLCK97,RLCK304,RLCK379,RLCK99,RLCK86,WAK15,RLCK377,RLCK24,RLCK26,RLCK159,RLCK242,RLCK73,RLCK171,RLCK108,RLCK132,RLCK247,RLCK363,WAK36,RLCK151,RLCK217,WAK98,RLCK102,WAK16,RLCK307,RLCK87,RLCK373,RLCK134,RLCK107,RLCK267,RLCK266,RLCK368,RLCK214,RLCK222,RLCK189,RLCK314,RLCK183,RLCK161,RLCK193,RLCK365,RLCK128,RLCK188,WAK82,RLCK100,WAK71,RLCK34,RLCK318,WAK72,_,RLCK55,RLCK64,RLCK317,RLCK196,RLCK166,RLCK62,RLCK45,RLCK16,RLCK268,RLCK194,RLCK341,RLCK330,RLCK112,RLCK354,RLCK68,RLCK198,WAK93,RLCK205,RLCK103,WAK100,RLCK167,RLCK1,RLCK67,RLCK339,RLCK113,RLCK355,RLCK356,RLCK343,RLCK2,RLCK146,RLCK337,RLCK334,RLCK326,RLCK322,RLCK325,RLCK311,RLCK232,RLCK298,RLCK374,RLCK277,RLCK345,WAK101,RLCK36,RLCK38,RLCK281,RLCK85,WAK45,RLCK30,RLCK98,RLCK35,RLCK200,RLCK29,RLCK348,RLCK66,RLCK57,RLCK23,RLCK175,RLCK11,WAK12,RLCK305,RLCK306,RLCK136,RLCK258,RLCK260,RLCK256,RLCK251,RLCK249,RLCK245,RLCK244,RLCK240,RLCK238,RLCK91,RLCK235,RLCK208,RLCK233,RLCK220,RLCK215,RLCK212,RLCK210,RLCK195,RLCK202,RLCK203,RLCK187,RLCK184,RLCK182,RLCK180,RLCK197,RLCK376,RLCK81,RLCK169,RLCK172,RLCK168,RLCK254,RLCK164,RLCK165,RLCK160,RLCK156,RLCK153,RLCK150,RLCK149,RLCK142,RLCK144,RLCK133,RLCK131,RLCK124,RLCK120,RLCK114,RLCK95,RLCK92,RLCK88,RLCK353,RLCK262,RLCK282,RLCK296,RLCK22,RLCK72,RLCK80,RLCK284,RLCK74,BBS1,RLCK288,RLCK303,RLCK302,RLCK294,RLCK18,RLCK154,RLCK297,RLCK347,RLCK127,RLCK216,WAK102,RLCK176,RLCK227,RLCK199,RLCK299,RLCK178,RLCK310,RLCK300,RLCK158,RLCK264,RLCK309,RLCK63,RLCK367,RLCK324,RLCK65,FON1,RLCK265,RLCK313,RLCK236,RLCK60,RLCK126,RLCK272,RLCK269,RLCK138,RLCK323,RLCK320,RLCK90,RLCK275,RLCK226,RLCK331,RLCK42,RLCK321,RLCK40,RLCK181,RLCK335,RLCK101,RLCK231,RLCK79,RLCK170,RLCK221,RLCK315,RLCK82,RLCK319,RLCK41,RLCK185,RLCK78,RLCK370,RLCK369,RLCK93,RLCK223,RLCK333,RLCK174,RLCK111,WAK47,WAK70,RLCK110,WAK81,RLCK33,RLCK316,WAK129,RLCK192,RLCK207,RLCK352,RLCK285,RLCK6,RLCK14,RLCK19,RLCK21,RLCK27,RLCK37,RLCK51,RLCK53,RLCK59,RLCK71,RLCK83,RLCK94,RLCK96,RLCK280,RLCK121,RLCK122,RLCK123,RLCK125,RLCK130,RLCK148,RLCK152,RLCK162,RLCK225,RLCK209,RLCK179,RLCK190,RLCK201,RLCK206,RLCK211,RLCK213,RLCK218,RLCK224,RLCK237,RLCK241,RLCK243,RLCK253,RLCK257,RLCK259,RLCK25,RLCK50,RLCK47,RLCK261,RLCK263,RLCK270,RLCK279,RLCK283,RLCK290,RLCK295,RLCK301,RLCK312,RLCK327,RLCK328,RLCK329,RLCK332,RLCK336,RLCK338,RLCK340,RLCK349,RLCK357,RLCK361,RLCK366,RLCK371,RLCK378,RLCK346,RLCK342,RLCK43,_,RLCK234,RLCK17,RLCK54,WAK77,RLCK115,RLCK13,RLCK106,RLCK15,RLCK4,RLCK10,RLCK145,RLCK5,RLCK173,RLCK364,RLCK351,RLCK58,RLCK56,RLCK9,RLCK69,RLCK116,RLCK276,RLCK239,RLCK48,RLCK8,RLCK344,RLCK70,WAK4,RLCK52,RLCK360,RLCK20,RLCK289,RLCK7,RLCK61,RLCK362,RLCK157,RLCK49,RLCK177,RLCK46	OsRLCK278, RLCK278,OsRLCK28,OsRLCK359,OsRLCK139,OsRLCK119, OsBSK4, BSK4,OsRLCK372,OsRLCK84,OsRLCK118,OsRLCK350,OsRLCK255,OsRLCK39,OsRLCK89,OsRLCK248,OsRLCK44,OsRLCK31,OsRLCK129,OsRLCK271,OsRLCK308, OsBSK2, BSK2,OsRLCK155,OsRLCK204, OsER1, ER1,OsRLCK186,OsRLCK104,OsRLCK250,OsRLCK3,OsRLCK141,OsRLCK105,OsRLCK137,OsRLCK191,OsRLCK163,OsRLCK358,OsRLCK135, OsLecRK3, LecRK3,OsRLCK117,OsRLCK97,OsRLCK304, OsBSK1-2, BSK1-2,OsRLCK379,OsRLCK99,OsRLCK86,OsWAK15, OsRLCK76, RLCK76,OsRLCK377,OsRLCK24,OsRLCK26,OsRLCK159,OsRLCK242,OsRLCK73,OsRLCK171,OsRLCK108,OsRLCK132,OsRLCK247,OsRLCK363,OsWAK36, OsRLCK140, RLCK140,OsRLCK151,OsRLCK217,OsWAK98, OsRLCK287, RLCK287,OsRLCK102,OsWAK16, OsRLCK77, RLCK77,OsPUB49, OsRLCK307,OsRLCK87,OsRLCK373,OsRLCK134, OsLecRK1, LecRK1,OsRLCK107,OsRLCK267, OsRPK1, RPK1,OsRLCK266, OsSIRK1,OsRLCK368, OsWAK, OsWAK125, WAK125,OsRLCK214,OsRLCK222,OsRLCK189, OsSTA156,OsRLCK314, 25L2,OsRLCK183, OsCrRLK1L2,OsRLCK161, OsCrRLK1L9 ,OsRLCK193, OsCrRLK1L13 ,OsRLCK365,OsRLCK128,OsRLCK188,OsWAK82, OsRLCK274, RLCK274,OsRLCK100,OsWAK71, OsRLCK229, RLCK229,OsRLCK34,OsWD40-188, OsRLCK318,OsWAK72, OsRLCK228, RLCK228,ORK1, OsRLCK246, RLCK246,OsRLCK55,OsRLCK64,OsRLCK317,OsRLCK196,OsRLCK166,OsRLCK62,OsRLCK45,OsRLCK16,OsRLCK268,OsPUB51, OsRLCK194,OsRLCK341,OsLysM-RLK8, OsRLCK330,OsPUB57, OsRLCK112,OsRLCK354,OsRLCK68,OsRLCK198,OsWAK93, OsRLCK286, RLCK286,OsRLCK205,GUDK, OsRLCK103,OsWAK100, OsRLCK291, RLCK291,OsRLCK167,OsRLCK1,OsRLCK67,OsRLCK339,OsRLCK113,OsRLCK355,OsRLCK356,OsRLCK343,OsRLCK2, rrsRLK,OsRLCK146,OsRLCK337,OsRLCK334,OsRLCK326,OsRLCK322,OsRLCK325,OsRLCK311,OsRLCK232,OsRLCK298,OsRLCK374,OsRLCK277,OsRLCK345,OsWAK101, OsRLCK292, RLCK292,OsRLCK36,OsRLCK38,OsPUB56, OsRLCK281,OsRLCK85, OsER2, ER2,OsWAK45, OsRLCK143, RLCK143,OsRLCK30,OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1,OsRLCK35,OsRLCK200,OsRLCK29,OsRLCK348,OsRLCK66,OsRLCK57,OsRLCK23,OsRLCK175,OsRLCK11,OsWAK12, OsRLCK75, RLCK75,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,OsPUB54, OsRLCK306,OsRLCK136, OsLecRK4, LecRK4,OsRLCK258,OsRLCK260,OsRLCK256,OsRLCK251,OsRLCK249,OsRLCK245,OsRLCK244,OsRLCK240,OsRLCK238,OsPUB62, OsRLCK91,OsRLCK235,OsRLCK208,OsRLCK233,OsRLCK220,OsRLCK215,OsRLCK212,OsRLCK210,OsRLCK195,OsRLCK202,OsRLCK203,OsRLCK187,OsRLCK184,OsRLCK182,OsRLCK180,OsPUB70, PUB70, OsRLCK197,OsRLCK376,OsPUB55, OsRLCK81,OsRLCK169,OsRLCK172,OsRLCK168,OsRLCK254,OsRLCK164,OsRLCK165,OsRLCK160,OsRLCK156,OsRLCK153,OsRLCK150,OsRLCK149,OsRLCK142,OsRLCK144,OsRLCK133,OsRLCK131,OsRLCK124,OsRLCK120,OsRLCK114,OsRLCK95,OsRLCK92,OsRLCK88,OsRLCK353,OsRLCK262,OsRLCK282,OsRLCK296,OsRLCK22,OsRLCK72,OsRLCK80,OsRLCK284,OsRLCK74,OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109,OsRLCK288,OsRLCK303,OsRLCK302,OsRLCK294,OsRLCK18,OsRLCK154, STRK1, OsSTRK1,OsRLCK297,OsRLCK347,OsRLCK127, CTB4a, qCTB4-1,OsRLCK216, OsRRK1, RRK1,OsWAK102, OsRLCK293, RLCK293,OsRLCK176,OsRLCK227,OsRLCK199,OsRLCK299,OsPti1a, OsRLCK178,OsRLCK310,OsRLCK300,OsRLCK158,OsRLCK264,OsRLCK309,OsRLCK63,OsRLCK367,OsRLCK324,OsRLCK65,OsFON1, fon1, OsRLCK219, RLCK219,OsRLCK265,OsRLCK313,OsRLCK236,OsRLCK60,OsRLCK126,OsRLCK272,OsRLCK269,OsRLCK138,OsRLCK323,OsRLCK320,OsRLCK90,OsRLCK275,OsRLCK226,OsRLCK331,OsRLCK42,OsRLCK321,OsRLCK40,OsRLCK181,OsRLCK335,OsRLCK101,OsRLCK231,OsRLCK79,OsRLCK170,OsRLCK221,OsRLCK315,OsRLCK82,OsRLCK319, OsCRLK21, CRLK21,OsRLCK41,OsRLCK185,OsRLCK78,OsRLCK370,OsRLCK369,OsPUB50, OsRLCK93,OsRLCK223,OsRLCK333,OsRLCK174,OsPUB59, OsRLCK111,OsWAK47, OsRLCK147, RLCK147,OsWAK70, OsRLCK230, RLCK230,OsRLCK110,OsWAK81, OsRLCK273, RLCK273,OsPti1b, OsRLCK33,OsWD40-186, OsRLCK316,OsWAK129, OsRLCK375, RLCK375,OsEnS-81, OsRLCK192,OsPUB47, OsRLCK207,OsRLCK352,OsPUB61, OsRLCK285,OsRLCK6,OsRLCK14,OsRLCK19,OsRLCK21,OsRLCK27,OsRLCK37,OsRLCK51,OsRLCK53,OsRLCK59,OsRLCK71,OsRLCK83,OsRLCK94,OsRLCK96,OsPUB52, OsRLCK280,OsRLCK121,OsRLCK122,OsRLCK123,OsRLCK125,OsRLCK130,OsRLCK148,OsRLCK152,OsRLCK162,OsRLCK225,OsRLCK209,OsRLCK179,OsRLCK190,OsRLCK201,OsRLCK206,OsRLCK211,OsRLCK213,OsRLCK218,OsRLCK224,OsRLCK237,OsRLCK241,OsRLCK243,OsRLCK253,OsRLCK257,OsRLCK259,OsRLCK25,OsRLCK50,OsRLCK47,OsRLCK261,OsRLCK263,OsRLCK270,OsRLCK279,OsRLCK283,OsRLCK290,OsRLCK295,OsRLCK301,OsRLCK312,OsRLCK327,OsRLCK328,OsRLCK329,OsRLCK332,OsRLCK336,OsRLCK338,OsRLCK340,OsRLCK349,OsRLCK357,OsRLCK361,OsRLCK366,OsRLCK371,OsRLCK378,OsRLCK346,OsRLCK342, OsSTA269,OsRLCK43,Os8Tak2, YK21, OsRLCK12, RLCK12,OsRLCK234,OsRLCK17,OsRLCK54,OsWAK77, OsRLCK252, RLCK252,OsRLCK115,OsRLCK13,OsRLCK106,OsRLCK15,OsRLCK4,OsRLCK10,OsRLCK145,OsRLCK5,OsRLCK173, OsBSK3, BSK3,OsRLCK364,OsRLCK351,OsRLCK58,OsRLCK56,OsRLCK9,OsPUB48, OsRLCK69,OsRLCK116,OsLysM-RLK10, OsRLCK276,OsRLCK239,OsRLCK48,OsRLCK8,OsRLCK344,OsRLCK70,OsWAK4, OsRLCK32, RLCK32,OsRLCK52,OsRLCK360,OsRLCK20,OsRLCK289,OsRLCK7,OsRLCK61,OsRLCK362,OsRLCK157,OsRLCK49,OsRLCK177,OsRLCK46
41561	0	Kerrie L. Forrest, Bhave M.	Major intrinsic proteins (MIPs) in plants: a complex gene family with major impacts on plant phenotype	Funct. Integr. Genomics	7	263-289	2007	LSI6,TIP1;1,LSI1,TIP4;1,NIP1;1,PIP2;4,PIP1A,NIP4;1,AM25,NIP3;4,NIP3;5,PIP2;2,PIP2;8,PIP2;9,NIP1;5,PIP2;10,TIP1;2,TIP4;3,TIP5;1,TIP3;2,TIP2;1,PIP2;3,TIP4;2,PIP2;6,PIP2A,NIP1;3,NIP3;1,PIP2;5,TIP2;2,TIP3;1,SIP1;1,NIP1;2,NIP3;3,PIP2;7,NIP3;2,PIP1;2,PIP1;3,SIP1;2	Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsTIP1;1, TIP1-1, rTIP1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsTIP4;1, TIP4-1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsNIP4;1, NIP4-1, OsNIP4.1, NIP4.1,AM25, OsNIP1;4, NIP1-4, OsNIP1.4, NIP1.4,OsNIP3;4, NIP3-4,OsNIP3;5, NIP3-5,OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP2;8, PIP2.8, PIP2-8, OsPIP2-7,OsPIP2;9, PIP2.9, PIP2-9,OsNIP1;5, NIP1-5,OsPIP2;10, PIP2.10, PIP2-10,OsTIP1;2, TIP1-2, TIP1.2, TIP1,OsTIP4;3, TIP4.3, TIP4-3,OsTIP5;1,OsTIP3;2, TIP3-2, OsEnS-70,OsTIP2;1, TIP2-1, TIP2,OsPIP2;3, PIP2-3, OsPIP2-2,OsTIP4;2, TIP4.2, TIP4-2,OsPIP2;6, PIP2-6, OsPIP2-5,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1,OsNIP1;3, NIP1-3, OsNIP1.3, NIP1.3,OsNIP3;1, NIP3-1, OsNIP3.1, NIP3.1,OsPIP2;5, PIP2-5,OsTIP2;2, TIP2-2,OsTIP3;1, TIP3-1, TIP3.1, TIP3, OsEnS-139,OsSIP1;1, SIP1-1,OsNIP1;2, NIP1-2, OsNIP1.2, NIP1.2,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsPIP1;2, PIP1-2, OsPIP1-2,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsSIP1;2, OsSTA98
41562	11283343	S Kawasaki, C Borchert, M Deyholos, H Wang, S Brazille, K Kawai, D Galbraith, H J Bohnert	Gene expression profiles during the initial phase of salt stress in rice.	Plant Cell	13(4)	889-905	2001	PIP2;2,PIP1;3,PIP1A	OsPIP2;2, PIP2-2, OsPIP2-3,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5
41563	15111723	Hong-Li Lian, Yu X., Ye Q., Ding X., Kitagawa Y., Sang-Soo Kwak, Wei-Ai Su, Zhang-Cheng Tang, Xiao-Song Ding	The role of aquaporin RWC3 in drought avoidance in rice.	Plant Cell Physiol.	45(4)	481-9	2004	PIP1;3	OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
41564	20107517	Wang K., Tang D., Hong L., Xu W., Huang J., Li M., Gu M., Xue Y., Cheng Z.	DEP and AFO regulate reproductive habit in rice.	PLoS Genet.	6(1)	e1000818	2010	RAP1A,LHS1	OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
41565	17409064	Shri Ram Yadav, Prasad K., Vijayraghavan U.	Divergent regulatory OsMADS2 functions control size, shape and differentiation of the highly derived rice floret second-whorl organ.	Genetics	176(1)	283-94	2007	MADS2,MADS4	OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMADS4, PI1
41566	14704206	Prasad K., Vijayraghavan U.	Double-stranded RNA interference of a rice PI/GLO paralog, OsMADS2, uncovers its second-whorl-specific function in floral organ patterning.	Genetics	165(4)	2301-5	2003	MADS2,MADS4	OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMADS4, PI1
41567	0	Khurram BASHIR, Yasuhiro ISHIMARU, Hugo SHIMO, Yusuke KAKEI, Takeshi SENOURA, Ryuichi TAKAHASHI, Yutaka SATO, Yuki SATO, Nobuyuki UOZUMI, Hiromi NAKANISHI, Naoko NISHIZAWA	Rice phenolics efflux transporter 2 (pez2) plays an important role in solubilizing apoplasmic iron	Soil Sci. Plant Nutr.	57	803-812	2011	_	PEZ2
41568	20197292	Kobayashi T., Ogo Y., May Sann Aung, Nozoye T., Reiko Nakanishi Itai, Nakanishi H., Yamakawa T., Naoko K Nishizawa	The spatial expression and regulation of transcription factors IDEF1 and IDEF2.	Ann. Bot.	105(7)	1109-17	2010	IDEF1,NAC36	OsLFL2, LFL2, OsIDEF1,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2
41569	16381838	Andersen,E.S., Rosenblad,M.A., Larsen,N., Westergaard,J.C., Burks,J., Wower,I.K., Wower,J., Gorodkin,J., Samuelsson,T. and Zwieb,C.	The tmRDB and SRPDB resources	Nucleic Acids Res.	34	D163-D168	2006		
41570	0	Blaner,A., Schneider,J. and Roeser,M.	Phylogenetic relationships in the grass family (Poaceae) based on the nuclear single copy locus topoisomerase 6 compared with chloroplast DNA	System. Biodivers. 12 (1), 111-124  REMARK DOI: 10.1080/14772000.2014.890137			2014	_,TOP6B	matK, ORF542 ,OsTOP6B, OsSPO11-6B
41571	25329378	Brozynska,M., Furtado,A. and Henry,R.J.	Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding	PLoS ONE	9 (10)	E110387	2014		
41572	23894646	Chiu,C.C., Chen,L.J., Su,P.H. and Li,H.M.	Evolution of chloroplast J proteins	PLoS ONE	8 (7)	E70384	2013	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	,OsDJC82, DJC82,OsDjA8,OsDjC45,OsDjC66,OsDjA7, OsDnaJ,OsDJC31,OsDjC56,OsDjC13,OsDjA2,OsDjC36,OsDjC60,,OsDjC46,OsDjC50,OsDjC1,,OsDjC47
41573	24416299	Gong,P., Zhao,M. and He,C.	Slow co-evolution of the MAGO and Y14 protein families is required for the maintenance of their obligate heterodimerization mode	PLoS ONE	9 (1)	E84842	2014	_,_,_,_,_	OsLFY, LFY,mago, OsMAGO2, MAGO2 ,OsY14a, Y14a ,OsY14b, Y14b,OsMAGO1, MAGO1
41574	14681369	Gueneau de Novoa,P. and Williams,K.P.	The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts	Nucleic Acids Res.	32	D104-D108	2004		
41575	0	Jadhao,K.R., Samal,K.C., Pradhan,S.K. and Rout,G.R.	Studies on Molecular Characterization of DREB Gene in Indica Rice (Oryza sativa L.)	Hereditary Genet	3(1)	1-12	2014	DREB2A	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
41576	0	Jia,L., Clegg,M. and Tao,J.	Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from Oryza sativa ssp. indica and japonica genomes	Plant Physiol.			2003		
41578	24280452	Kamolsukyunyong,W., Sukhaket,W., Ruanjaichon,V., Toojinda,T. and Vanavichit,A.	Single-feature polymorphism mapping of isogenic rice lines identifies the influence of terpene synthase on brown planthopper feeding preferences	Rice (N Y)	6(1)	18	2013	_,_,_,BPH3	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10,STPS, OsSTPS, OsSTPS2, STPS2 ,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13,Bph3
41579	0	Karimian,M., Miroliaei,M., Ghaedi,K., Ehsanpour,A. and Zahraie,Z.	Construction of a Vector Containing the Coding Sequence of the Lipid Transfer Proten-2 (LTP2) Gene from Rice	J Mol Genet	3(1)	1-4	2011	LTP2	nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3
41580	0	Kazama,T. and Toriyama,K.	A fertility restorer gene, Rf4, widely used for hybrid rice breeding encodes a pentatricopeptide repeat protein	Rice 7, 28  REMARK DOI:10.1186/s12284-014-0028-z			2014	_,_,_,_	Rf4, Rf-4, PPR782a, PPR9, PPR3,PPR782b,PPR458, PPR7, PPR4,PPR454, PPR10, PPR2
41581	21037258	Kozomara,A. and Griffiths-Jones,S.	miRBase: integrating microRNA annotation and deep-sequencing data	Nucleic Acids Res.	39	D152-D157	2011	MIR1878,MIR435,MIR439F,MIR169B,MIR5536,MIR164D,MIR396B,MIR439A,MIR393B,MIR164B,MIR171G,MIR1428E,MIR812M,MIR814A,MIR2863A,MIR1319,MIR1849,MIR156G,MIR156A,MIR171B,MIR5147,MIR2121A,MIR160F,MIR440,MIR444C,MIR166G,MIR164F,MIR439D,MIR396E,MIR5146,MIR169R,MIR816,MIR2866,MIR5158,MIR5539A,MIR399B,MIR528,MIR171F,MIR5144,MIR1432,MIR2118O,MIR167G,MIR171I,MIR439H,MIR171E,MIR2863C,MIR171D,MIR439C,MIR818C,MIR5154,MIR2121B,MIR812O,MIR812G,MIR1861H,MIR5076,MIR529A,MIR395I,MIR1863B,MIR5339,MIR395J,MIR166A,MIR395M,MIR156F,MIR395R,MIR5074,MIR814C,MIR5153,MIR1883A,MIR1423,MIR437,MIR1437,MIR5542,MIR166M,MIR169E,MIR169F,MIR1880,MIR444F,MIR5337,MIR5148A,MIR1883B,MIR2097,MIR156I,MIR390,MIR1861I,MIR164A,MIR439G,MIR396D,MIR166K,MIR167E,MIR1871,MIR399C,MIR169O,MIR444E,MIR5159,miR159F,MIR1861J,MIR395P,miR1874,MIR169M,MIR166H,MIR5526,MIR164E,MIR2867,MIR1857,MIR1853,MIR812A,miR159C,MIR2863B,MIR167H,miR159D,miR159B,MIR395L,MIR444D,MIR3979,MIR820B,MIR5537,MIR5161,MIR1856,MIR166L,MIR1876,MIR529B,MIR162B,MIR156B,MIR156J,MIR166N,MIR1862D,MIR169I,MIR169N,MIR3982,MIR166E,MIR167J,MIR1846D,MIR166I,MIR1846A,MIR395E,MIR2878,MIR2879,MIR2905,MIR2873B,MIR2874,MIR2875,MIR812N,MIR5513,MIR812E,MIR5149,MIR2871A,miR159E,MIR5485,MIR156L,MIR1865,MIR395Q,MIR395H,MIR1850,MIR156K,MIR167C,MIR395S,MIR395K,MIR1861A,MIR444B,MIR1879,MIR1862C,MIR169C,MIR5082,MIR164C,MIR5538,MIR5148C,MIR399J,MIR1860,MIR399D,MIR396G,MIR2093,MIR1862G,MIR2055,MIR396A,MIR172A,MIR397A,MIR5522,MIR319B,MIR1861F,MIR162A,MIR169H,MIR530,MIR1864,MIR818E,MIR1861M,MIR2869,MIR812K,MIR815B,MIR1439,MIR397B,miR535,MIR169,MIR444A,MIR818A,MIR398B,MIR5340,MIR815A,MIR395N,MIR812F,MIR399A,MIR396C,MIR812L,MIR393,MIR1861O,MIR812H,MIR820C,MIR820A,MIR815C,MIR1425,MIR2096,MIR1861D,MIR1861G,MIR1862B,MIR5539B,MIR167B,MIR172B,MIR1861L,MIR167A,MIR172D,MIR172C,MIR166B,MIR810B,MIR319A,MIR399H,MIR394,MIR1429,MIR1431,MIR1441,MIR5490,MIR2871B,MIR1436,MIR156C,MIR5148B,MIR812I,MIR1872,MIR395G,MIR1442,MIR395C,MIR814B,MIR171,MIR167F,MIR166D,MIR167I,MIR5160,MIR169g,MIR1873,MIR5145,MIR5150,MIR166F,MIR1863,MIR1863C,MIR396H,MIR1862E,MIR1862A,miR827,MIR812B,MIR5512A,MIR818D,MIR5534A,MIR1881,MIR160E,MIR5540,MIR810A,MIR1861K,MIR1846B,MIR6249B,MIR1861E,MIR1861C,MIR1859,MIR3980B,MIR5151,MIR159A,MIR1846E,MIR5083,MIR171H,MIR167D,MIR3980A,MIR171C,MIR5504,MIR5525,MIR5535,MIR5503,MIR2864,MIR160D,MIR1869,MIR5505,MIR812J,MIR1320,MIR1851,MIR5143A,MIR1861B,MIR1868,MIR1875,MIR2870,MIR2880,MIR395Y,MIR3981,MIR1862F,MIR156E,MIR166C,MIR156D,MIR5078,MIR812C,MIR395D,MIR439E,MIR160C,MIR160B,MIR812D,SDT,MIR168A,MIR439B,MIR396F,MIR5532,MIR5493,MIR5498,MIR818B,MIR169K,MIR169L,MIR169J,MIR5502,MIR408,MIR1870,MIR5072,MIR160A,MIR5508,MIR395B,MIR2873	miR1878, osa-miR1878, osa-MIR1878,miR435, osa-MIR435,miR439f, osa-MIR439f,miR169b, osa-miR169b, osa-MIR169b,miR5536, Osa-miR5536, OsmiR5536,miR164d, osa-miR164d,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR439a, osa-MIR439a,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p,miR164b, osa-miR164b,miR171g, osa-miR171g,OsmiR1428e, miR1428e, osa-miR1428e, osa-MIR1428e, miR1428e_3posa-miR1428e-3p,miR812m, osa-miR812m, osa-MIR812m,miR814a, osa-miR814a, osa-MIR814a,miR2863a, osa-miR2863a, osa-MIR2863a,miR1319, osa-miR1319, osa-MIR1319, osa-MIR1319a, osa-miR1319a,miR1849, osa-miR1849, osa-MIR1849,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR171b, osa-miR171b,miR5147, osa-miR5147, osa-MIR5147,miR2121a, osa-miR2121a, osa-MIR2121a,miR160f, osa-miR160f, osa-MIR160fosa-miR160f-3p osa-miR160f-5p,miR440, osa-MIR440,miR444c, osa-MIR444c, osa-miR444c, osa-miR444c.1, osa-miR444c.2,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR164f, osa-miR164f,miR439d, osa-MIR439d,miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p,miR5146, osa-miR5146, osa-MIR5146, MIR5146-3p,miR169r, osa-miR169r, osa-MIR169r, osa-miR169r-3p osa-miR169r-5p,miR816, osa-miR816, osa-MIR816,miR2866, osa-miR2866, osa-MIR2866,miR5158, osa-miR5158, osa-MIR5158, MIR5158-3p,miR5539a, Osa-miR5539a, OsmiR5539a,OsmiR399b, osa-MIR399b, miR399b,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR171f, osa-miR171fosa-miR171f-3p osa-miR171f-5p,miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,miR2118o, osa-miR2118o, osa-MIR2118o,miR167g, osa-miR167g, osa-miRNA167g ,miR171i, osa-miR171iosa-miR171i-3p osa-miR171i-5p,miR439h, osa-MIR439h,miR171e, osa-miR171eosa-miR171e-3p osa-miR171e-5p,miR2863c, osa-miR2863c, osa-MIR2863c,miR171d, osa-miR171dosa-miR171d-3p osa-miR171d-5p,miR439c, osa-MIR439c,miR818c, osa-miR818c, osa-MIR818c,miR5154, osa-miR5154, osa-MIR5154, MIR5154-3p,miR2121b, osa-miR2121b, osa-MIR2121b,miR812o, Osa-miR812o, OsmiR812o, osa-miR812o-3p osa-miR812o-5p,miR812g, osa-miR812g, osa-MIR812g,miR1861h, osa-miR1861h, osa-MIR1861h,miR5076, osa-miR5076, osa-MIR5076,miR529a, Osa-miR529a, OsmiR529a,OsmiR395i, miR395i, osa-MIR395i,miR1863b, osa-miR1863b, osa-MIR1863b, osa-miR1863b.2, MIR1863b.2-3p,miR5339, osa-miR5339, osa-MIR5339,OsmiR395j, miR395j, osa-MIR395j,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,OsmiR395m, miR395m, osa-MIR395m,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,OsmiR395r, miR395r, osa-MIR395r,miR5074, osa-miR5074, osa-MIR5074,miR814c, osa-miR814c, osa-MIR814c,miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p,miR1883a, osa-miR1883a, osa-MIR1883a,miR1423, osa-miR1423, osa-MIR1423, miR1423bosa-miR1423-5p,miR437, osa-MIR437,miR1437, osa-miR1437, osa-MIR1437, osa-MIR1437a, osa-miR1437a,miR5542, Osa-miR5542, OsmiR5542,miR166m, osa-miR166m,miR169e, osa-miR169e, osa-MIR169e,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR1880, osa-miR1880, osa-MIR1880,miR444f, osa-MIR444f,miR5337, osa-miR5337, osa-MIR5337, osa-MIR5337a,miR5148a, osa-miR5148a, osa-MIR5148a, MIR5148a-3p,miR1883b, osa-miR1883b, osa-MIR1883b,miR2097, osa-miR2097, osa-MIR2097osa-miR2097-5p,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,miR1861i, osa-miR1861i, osa-MIR1861i,miR164a, osa-miR164a,miR439g, osa-MIR439g,miR396d, osa-miR396d, osa-MIR396d,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,miR1871, osa-miR1871, osa-MIR1871,OsmiR399c, osa-MIR399c, miR399c,miR169o, osa-miR169o, osa-MIR169o,miR444e, osa-MIR444e,miR5159, osa-miR5159, osa-MIR5159,OsmiR159f, osa-MIR159f,miR1861j, osa-miR1861j, osa-MIR1861j,OsmiR395p, miR395p, osa-MIR395p,OsmiR1874, osa-MIR1874osa-miR1874 osa-miR1874-3p,miR169m, osa-miR169m, osa-MIR169m,miR166h, osa-miR166hosa-miR166h-3p osa-miR166h-5p,miR5526, Osa-miR5526, OsmiR5526,miR164e, osa-MIR164e,miR2867, osa-miR2867, osa-MIR2867osa-miR2867-3p osa-miR2867-5p,miR1857, osa-miR1857, osa-MIR1857osa-miR1857-3p osa-miR1857-5p,miR1853, osa-miR1853, osa-MIR1853osa-miR1853-3p,miR812a, osa-miR812a, osa-MIR812a,OsmiR159c, osa-MIR159c,miR2863b, osa-miR2863b, osa-MIR2863b,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,OsmiR159d, osa-MIR159d,OsmiR159b, osa-MIR159b,OsmiR395l, miR395l, osa-MIR395l,miR444d, osa-MIR444d, osa-miR444d, osa-miR444d.1, osa-miR444d.2, osa-miR444d.3,miR3979, osa-miR3979, osa-MIR3979osa-miR3979-3p osa-miR3979-5p,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR5537, Osa-miR5537, OsmiR5537,miR5161, osa-miR5161, osa-MIR5161, MIR5161-3p,miR1856, osa-miR1856, osa-MIR1856,miR166l, osa-miR166losa-miR166l-3p osa-miR166l-5p,miR1876, osa-miR1876, osa-MIR1876,miR529b, Osa-miR529b, OsmiR529b,miR162b, osa-miR162b, osa-MIR162b ,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR1862d, osa-miR1862d, osa-MIR1862d,miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2,miR169n, osa-miR169n, osa-MIR169n,miR3982, osa-miR3982, osa-MIR3982osa-miR3982-3p osa-miR3982-5p,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR167j, osa-miR167j, osa-MIR167j,miR1846d, osa-miR1846d, osa-MIR1846dosa-miR1846d-3p osa-miR1846d-5p,miR166i, osa-miR166iosa-miR166i-3p,miR1846a, osa-miR1846a, osa-MIR1846aosa-miR1846a-5p,OsmiR395e, miR395e, osa-MIR395e,miR2878, osa-miR2878, osa-MIR2878, osa-miR2878-5p, osa-miR2878-3posa-miR2878-3p osa-miR2878-5p,miR2879, osa-miR2879, osa-MIR2879,miR2905, osa-miR2905, osa-MIR2905,miR2873b, osa-miR2873b, osa-MIR2873b,miR2874, osa-miR2874, osa-MIR2874,miR2875, osa-miR2875, osa-MIR2875,miR812n, osa-miR812n, osa-MIR812nosa-miR812n-3p osa-miR812n-5p,miR5513, osa-miR5513, osa-MIR5513,miR812e, osa-miR812e, osa-MIR812e,miR5149, osa-miR5149, osa-MIR5149, MIR5149-3p,miR2871a, osa-miR2871a, osa-MIR2871a, MIR2871a-5posa-miR2871a-3p osa-miR2871a-5p,OsmiR159e, osa-MIR159e,miR5485, osa-miR5485, osa-MIR5485,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR1865, osa-miR1865, osa-MIR1865osa-miR1865-3p osa-miR1865-5p,OsmiR395q, miR395q, osa-MIR395q,OsmiR395h, miR395h, osa-MIR395h, OsamiR395h ,miR1850, osa-miR1850, osa-MIR1850, osa-miR1850.1, osa-miR1850.3,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR167c, osa-miR167cosa-miR167c-3p osa-miR167c-5p,OsmiR395s, miR395s, osa-MIR395s,OsmiR395k, miR395k, osa-MIR395k,miR1861a, osa-miR1861a, osa-MIR1861a,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,miR1879, osa-miR1879, osa-MIR1879,miR1862c, osa-miR1862c, osa-MIR1862c,miR169c, osa-miR169c, osa-MIR169c,miR5082, osa-miR5082, osa-MIR5082,miR164c, osa-miR164c,miR5538, Osa-miR5538, OsmiR5538,miR5148c, osa-miR5148c, osa-MIR5148c, MIR5148c-3p,OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d,miR396g, osa-miR396g, osa-MIR396g,miR2093, osa-miR2093, osa-MIR2093osa-miR2093-5p,miR1862g, osa-miR1862g, osa-MIR1862g,miR2055, OsmiR2055, osa-miR2055, osa-MIR2055,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR5522, Osa-miR5522, OsmiR5522,OsmiR319b, Osa-miR319b,miR1861f, osa-miR1861f, osa-MIR1861f,miR162a, osa-miR162a, osa-MIR162a,miR169h, osa-miR169h, osa-MIR169h,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,miR1864, osa-miR1864, osa-MIR1864,miR818e, osa-miR818e, osa-MIR818e,miR1861m, osa-miR1861m, osa-MIR1861m,miR2869, osa-miR2869, osa-MIR2869,miR812k, Osa-miR812k, OsmiR812k,miR815b, osa-miR815b, osa-MIR815b, OsmiR815b,miR1439, osa-miR1439, osa-MIR1439,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,OsmiR535, osa-MIR535osa-miR535 osa-miR535-3p osa-miR535-5p,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,miR818a, osa-miR818a, osa-MIR818a,miR398b, osa-miR398b, osa-MIR398b,miR5340, osa-miR5340, osa-MIR5340,miR815a, osa-miR815a, osa-MIR815a, OsmiR815a,OsmiR395n, miR395n, osa-MIR395n,miR812f, osa-miR812f, osa-MIR812f,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,miR812l, Osa-miR812l, OsmiR812l,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,miR1861o, osa-miR1861o, osa-MIR1861o,miR812h, osa-miR812h, osa-MIR812h,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR815c, osa-miR815c, osa-MIR815c, OsmiR815c,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,miR2096, osa-miR2096, osa-MIR2096osa-miR2096-3p osa-miR2096-5p,miR1861d, osa-miR1861d, osa-MIR1861d,miR1861g, osa-miR1861g, osa-MIR1861g,miR1862b, osa-miR1862b, osa-MIR1862b,miR5539b, Osa-miR5539b, OsmiR5539b,miR167b, osa-miR167b,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,miR1861l, osa-miR1861l, osa-MIR1861l,miR167a, osa-miR167aosa-miR167a-3p osa-miR167a-5p,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p,miR810b, osa-miR810b, osa-MIR810b, Osa-miR810b.2, miR810-3p, osa-miR810b.1, osa-miR810b.2,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsmiR399h, osa-MIR399h,OsmiR394, miR394, osa-MIR394,miR1429, osa-miR1429, osa-MIR1429osa-miR1429-3p osa-miR1429-5p,miR1431, osa-miR1431, osa-MIR1431,miR1441, osa-miR1441, osa-MIR1441,miR5490, Osa-miR5490, OsmiR5490,miR2871b, osa-miR2871b, osa-MIR2871b,miR1436, osa-miR1436, osa-MIR1436,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR5148b, osa-miR5148b, osa-MIR5148b, MIR5148b-3p,miR812i, osa-miR812i, osa-MIR812i,miR1872, osa-miR1872, osa-MIR1872,OsmiR395g, miR395g, osa-MIR395g,miR1442, osa-miR1442, osa-MIR1442,OsmiR395c, miR395c, osa-MIR395c,miR814b, osa-miR814b, osa-MIR814b,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR167f, osa-miR167f, osa-miRNA167f ,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p,miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR5160, osa-miR5160, osa-MIR5160, MIR5160-3p,MIR-169g, osa-MIR169g,miR1873, osa-miR1873, osa-MIR1873,miR5145, osa-miR5145, osa-MIR5145, MIR5145-5p,miR5150, osa-miR5150, osa-MIR5150osa-miR5150-3p osa-miR5150-5p,miR166f, osa-miR166f,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a,miR1863c, osa-miR1863c, osa-MIR1863c,miR396h, osa-miR396h, osa-MIR396h,miR1862e, osa-miR1862e, osa-MIR1862e,miR1862a, osa-miR1862a, osa-MIR1862a,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,miR812b, osa-miR812b, osa-MIR812b,miR5512a, Osa-miR5512a, OsmiR5512a,miR818d, osa-miR818d, osa-MIR818d,miR5534a, Osa-miR5534a, OsmiR5534a,miR1881, osa-miR1881, osa-MIR1881,miR160e, osa-miR160e, osa-MIR160eosa-miR160e-5p,miR5540, Osa-miR5540, OsmiR5540,miR810a, osa-miR810a, osa-MIR810a,miR1861k, osa-miR1861k, osa-MIR1861k,miR1846b, osa-miR1846b, osa-MIR1846bosa-miR1846b-5p,miR6249b, Osa-miR6249b, OsmiR6249b,miR1861e, osa-miR1861e, osa-MIR1861e,miR1861c, osa-miR1861c, osa-MIR1861c,miR1859, osa-miR1859, osa-MIR1859 ,miR3980b, osa-miR3980b, osa-MIR3980b, osa-miR3980a-3p, osa-miR3980a-5p,miR5151, osa-miR5151, osa-MIR5151, MIR5151-5p,miR159a, osa-miR159a, osa-MIR159a, OsmiR159a.2, miR159a.2, OsmiR159a.1, miR159a.1, osa-miR159a.1, osa-miR159a.2,miR1846e, osa-miR1846e, osa-MIR1846e,miR5083, osa-miR5083, osa-MIR5083,miR171h, osa-miR171h,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR3980a, osa-miR3980a, osa-MIR3980a, osa-miR3980a-3p, osa-miR3980a-5p,miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,miR5504, Osa-miR5504, OsmiR5504,miR5525, Osa-miR5525, OsmiR5525,miR5535, Osa-miR5535, OsmiR5535,miR5503, Osa-miR5503, OsmiR5503,miR2864, osa-miR2864, osa-MIR2864, osa-miR2864.1, osa-miR2864.2,miR160d, osa-miR160d, osa-MIR160dosa-miR160d-3p osa-miR160d-5p,miR1869, osa-miR1869, osa-MIR1869,miR5505, Osa-miR5505, OsmiR5505,miR812j, osa-miR812j, osa-MIR812j,miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p,miR1851, osa-miR1851, osa-MIR1851,miR5143a, osa-miR5143a, osa-MIR5143a,miR1861b, osa-miR1861b, osa-MIR1861b,miR1868, osa-miR1868, osa-MIR1868,miR1875, osa-miR1875, osa-MIR1875,miR2870, osa-miR2870, osa-MIR2870,miR2880, osa-miR2880, osa-MIR2880,miR395y, osa-miR395y, osa-MIR395y,miR3981, osa-miR3981, osa-MIR3981osa-miR3981-3p osa-miR3981-5p,miR1862f, osa-miR1862f, osa-MIR1862f,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,miR5078, osa-miR5078, osa-MIR5078,miR812c, osa-miR812c, osa-MIR812c,OsmiR395d, miR395d, osa-MIR395d,miR439e, osa-MIR439e,miR160c, osa-miR160c, osa-MIR160cosa-miR160c-3p osa-miR160c-5p,miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,miR812d, osa-miR812d, osa-MIR812d,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p,miR439b, osa-MIR439b,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,miR5532, Osa-miR5532, OsmiR5532,miR5493, Osa-miR5493, OsmiR5493,miR5498, Osa-miR5498, OsmiR5498,miR818b, osa-miR818b, osa-MIR818b,miR169k, osa-miR169k, osa-MIR169k,miR169l, osa-miR169l, osa-MIR169l,miR169j, osa-miR169j, osa-MIR169j,miR5502, Osa-miR5502, OsmiR5502,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR1870, osa-miR1870, osa-MIR1870osa-miR1870-3p osa-miR1870-5p,miR5072, osa-miR5072, osa-MIR5072,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,miR5508, osa-miR5508, osa-MIR5508,OsmiR395b, miR395b, osa-MIR395b,miR2873, osa-miR2873, osa-MIR2873, osa-MIR2873a
41582	24690362	Mariac,C., Scarcelli,N., Pouzadou,J., Barnaud,A., Billot,C., Faye,A., Kougbeadjo,A., Maillol,V., Martin,G., Sabot,F., Santoni,S., Vigouroux,Y. and Couvreur,T.L.	Cost-effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies	Mol Ecol Resour	14(6)	1103-1113	2014		
41583	0	McIntyre,C.L., Winberg,B., Houchins,K., Appels,R. and Baum,B.R.	Relationships between Oryza species based on 5S DNA sequences	Plant Syst. Evol.  In press REMARK (sites)			1991		
41584	0	Nishizawa,Y. and Hibi,T.	Isolation and characterization of a cDNA for rice chitinase	Plant Sci.	76	211-218	1991		
41585	0	Pusadee,T., Oupkaew,P., Rerkasem,B., Jamjod,S. and Schaal,B.	Natural and Human Mediated Selection in a Landrace of Thai Rice (Oryza sativa L.)	Ann. Appl. Biol.			2014	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
41586	24272491	Reddy,P.S. and Padayatty,J.D.	Effects of 5' flanking sequences and changes in the 5' internal control region on the transcription of rice tRNA % MathType!MTEF!2!1!+-% feaafiart1ev1aaatCvAUfeBSjuyZL2yd9gzLbvyNv2CaerbuLwBLn% hiov2DGi1BTfMBaeXatLxBI9gBaerbd9wDYLwzYbItLDharqqtubsr% 4rNCHbGeaGqiVu0Je9sqqrpepC0xbbL8F4rqqrFfpeea0xe9Lq-Jc9% vqaqpepm0xbba9pwe9Q8fs0-yqaqpepae9pg0FirpepeKkFr0xfr-x% fr-xb9adbaqaaeGaciGaaiaabeqaamaabaabaaqcKbay-haafaqabe% GabaaabaGaae4raiaabYgacaqG5baabaGaae4raiaaboeacaqGdbaa% aaaa!3CC7![egin{array}{*{20}c} {{	ext{Gly}}} \ {{	ext{GCC}}} \ end{array} ]	Plant Mol. Biol.	11(5)	575-583	1988		
41588	0	Wan,J.	Pattern-recognition Receptor Confers Broad-Spectrum and Durable Insect Resistance in Rice	Nat. Biotechnol.			2014	RLCK136,RLCK134,_,_,_,RLCK135	OsRLCK136, OsLecRK4, LecRK4,OsRLCK134, OsLecRK1, LecRK1,OsLecRK paralog,OsLecRK2, LecRK2,OsLecRK paralog,OsRLCK135, OsLecRK3, LecRK3
41589	25483893	Wu,Y., Wang,Y., Li,J., Li,W., Zhang,L., Li,Y., Li,X., Li,J., Zhu,L. and Wu,G.	Development of a general method for detection and quantification of the P35S promoter based on assessment of existing methods	Sci Rep	4	7358	2014		
41590	0	Yamamoto,N., Kubota,T., Masumura,T., Shiraishi,N., Tanaka,K., Sugimoto,T. and Oji,Y.	Molecular cloning, gene expression and functional expression of a phosphoenolpyruvate carboxylase Osppc1 in developing rice seeds: implication of involvement in nitrogen accumulation	Seed Sci. Res.	24(1)	23-36	2014		
41591	0	Yamamoto,N., Kubota,T., Masumura,T., Shiraishi,N., Tanaka,K., Sugimoto,T. and Oji,Y.	Molecular cloning, gene expression and functional expression of a phosphoenolpyruvate carboxylase Osppc1 in developing rice seeds: implication of involvement in nitrogen accumulation	Seed Sci. Res.	24	23-36	2014		
41592	25162526	Yuan,F., Yang,H., Xue,Y., Kong,D., Ye,R., Li,C., Zhang,J., Theprungsirikul,L., Shrift,T., Krichilsky,B., Johnson,D.M., Swift,G.B., He,Y., Siedow,J.N. and Pei,Z.M.	OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis	Nature	514(7522)	367-371	2014	OSCA2.5,OSCA1.3,OSCA2.2,OSCA4.1,OSCA2.3,OSCA2.4,OSCA1.4,ERD4,OSCA2.1,OSCA1.2,OSCA1.1	OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2,OsOSCA4.1, OsIOSCA4.1,OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1,OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1,OsOSCA1.4 , OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1,OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4
41593	0	Zang,L.-L., Zou,X.-H., Zhang,F.-M., Yang,Z. and Ge,S.	Phylogeny and species delimitation of the C-genome diploid species in Oryza	J Syst Evol			2012		
41594	0	Zhao,D.-S., Zhang,C.-Q., Gu,M.-H. and Liu,Q.-Q.	Genetic and Expression Anaylses of Ef7-1, a Novel Ef7 Allele, in Rice	Zuo Wu Xue Bao	39(10)	1799-1805	2013	PHYB,HD3B	phyB, PHYB1, OsPHYB, OsphyB,Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1
41595	25765449	Zhang F., Li-Yu Huang, Zhang F., Ali J., Cruz C., Da-Long Zhuo, Zheng-Lin Du, Zhi-Kang Li, Yong-Li Zhou	Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response.	BMC Genomics	16(1)	111	2015	XA39	Xa39
41596	0	Zhang F., D.-L.. Zhuo, F. .Zhang, L.-Y. Huang, W.-S. Wang, J.-L. Xu, C.Vera Cruz, Z.-K. Li, Y.-L. Zhou.	Xa39, a novel dominant gene conferring broad-spectrum resistance to Xanthomonas oryzae pv. oryzae in rice	Plant Pathol.			2014	XA39	Xa39
41597	25587002	Zhao D., Ferguson A., Jiang N.	Transposition of a Rice Mutator-Like Element in the Yeast Saccharomyces cerevisiae.	Plant Cell			2015	_,_,_,_,_,_	,,Os3378-Z,,,
41598	25605935	Edwards J., Johnson C., Santos-Medell?n C., Lurie E., Podishetty N.K., Bhatnagar S., Eisen J.A., Sundaresan V.	Structure, variation, and assembly of the root-associated microbiomes of rice.	Proc. Natl. Acad. Sci. U.S.A.	112(8)	E911-20	2015		
41599	25447912	Yang S.Y., Hao D.L., Song Z.Z., Yang G.Z., Wang L., Su Y.H.	RNA-Seq analysis of differentially expressed genes in rice under varied nitrogen supplies.	Gene	555(2)	305-17	2015		
41600	25445270	Nigam D., Kumar S., Mishra D.C., Rai A., Smita S., Saha A.	Synergistic regulatory networks mediated by microRNAs and transcription factors under drought, heat and salt stresses in Oryza Sativa spp.	Gene	555(2)	127-39	2015		
41601	25445269	Golestan Hashemi FS., Rafii M.Y., Ismail M.R., Mohamed M.T., Rahim H.A., Latif M.A., Aslani F.	The genetic and molecular origin of natural variation for the fragrance trait in an elite Malaysian aromatic rice through quantitative trait loci mapping using SSR and gene-based markers.	Gene	555(2)	101-7	2015		
41602	25447922	Xu J., Liu C., Li M., Hu J., Zhu L., Zeng D., Yang Y., Peng Y., Ruan B., Guo L., Li H.	A rice DEAD-box RNA helicase protein, OsRH17, suppresses 16S ribosomal RNA maturation in Escherichia coli.	Gene	555(2)	318-28	2015	_,_,_,_,_,_,_,_,AIP1,_,_,_,_,_,_,_,EIF4A2,_,AIP2,EIF4A1,_,TOGR1,_,_,_,_,RH58,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsRH50, OsBIRH1,OsRH52C,PRP5, OsRH42,OsRH48,OsRH47A,OsRH51,OsRH47B,OsABP, OsRH31,AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56,OsRH41,OsRH37,OsRH45,BIP115, OsRH18,OsRH26,OS-RNAH, OsRH29,OsRH5,eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,OsRH2, RH2, eIF4A-3,AIP2, Os AIP2, OsAIP2, OsRH15,eIF-4a, EIF4A, eIF4A1, elF-4A, eIF4A-1, OsRH4,OsRH34, RH34,DDX47, OsRH10,OsRH14, p68,OsRH57,OsRH25, RH25,OsRH53,OsRH58,OsRH35A,OsRH3,OsRH20,OsRH27,OsRH30,OsRH38,mog-4,OsRH52A, RH52A,OsRH7,OsRH35B,OsRH39,OsRH21,OsRH32,OsRH22,OsRH24,OsRH28,OsRH19, eIF4A-2,OsRH16,OsRH13,OsRH12,OsRH8,OsRH9,OsRH36,OsRH52B, RH52B, RBP-100 ,OsRH17,OsRH1,OsRH6,OsRH40, DRH1
41603	25555239	Zhou X., Li L., Xiang J., Gao G., Xu F., Liu A., Zhang X., Peng Y., Chen X., Wan X.	OsGL1-3 is Involved in Cuticular Wax Biosynthesis and Tolerance to Water Deficit in Rice.	PLoS ONE	10(1)	e116676	2015	_,_,_,_,_,_,_,_	OsCER7,KCR1, OsKCR1,OsGL1-3,CER10, OsCER10,OsCER4,OsPAS2,FATB1, OsFATB1,LACS1, OsLACS1
41604	25563494	Zhang L., Li Q., Dong H., He Q., Liang L., Tan C., Han Z., Yao W., Li G., Zhao H., Xie W., Xing Y.	Three CCT domain-containing genes were identified to regulate heading date by candidate gene-based association mapping and transformation in rice.	Sci Rep	5	7663	2015	EF1,_,_,_,SE1,PRR73,_,_,_,_,_,_,_,PRR95,_,RFT1,_,_,_,_,_,GATA18 ,_,_,_,HD2,GHD7,HD3A,_,_,_,_,PRR59,_,_,GATA19,_,GATA17,TOC1,_,_,GATA20,_,_	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsCCT01, OsCMF1,OsBBX15, OsCCT19, OsS, OsSTA162, BBX15, CCT19, STA162,OsCCT10, OsCMF4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,OsBBX20, OsE, OsCCT23, BBX20, CCT23,OsCCT25, OsCMF7,OsBBX12, OsC, OsCCT16, BBX12, CCT16,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06,OsCCT37,OsBBX25, OsG, OsCCT29, BBX25, CCT29,OsCCT34, OsCMF10, CO9,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsNRR, NRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, Os CRCT,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2,OsCCT41, OsCMF14,OsCCT02, OsCMF2, OsSTA46,OsP, OsBBX9, OsCCT12, BBX9, CCT12,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, COL15, OsCOL15/OsBBX26, Hd1-3,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,OsBBX3, OsF, OsCCT05, BBX3, CCT05,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsCCT40,OsCCT03, OsCMF3,OsCCT17, OsCMF5,OsCCT39, OsCMF13,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsBBX17, BBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, BBX8, CCT09, Ghd2,OsTIFY1b, TIFY1B, OsCCT15, OsGATA19, OsGATA19a, OsGATA19b,OsBBX23, OsCCT27, BBX23, CCT27, OsR, OsCOL13, COL13,OsTIFY2a, OsCCT04, OsGATA17, OsGATA17a, OsGATA17b,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsCCT36, OsCMF12,OsCCT35, OsCMF11, OsH ,OsTIFY2b, TIFY2B, OsCCT24, OsGATA20,OsBBX19, BBX19, OsM, DTH2, qDTH-2, OsCCT22, CCT22,OsBBX28, OsCCT32, OsQ, BBX28, CCT32
41605	25573482	Yoshitake Y., Yokoo T., Saito H., Tsukiyama T., Quan X., Zikihara K., Katsura H., Tokutomi S., Aboshi T., Mori N., Inoue H., Nishida H., Kohchi T., Teraishi M., Okumoto Y., Tanisaka T.	The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.	Sci Rep	5	7709	2015	SE13,GHD7,EHD2/RID1,SE1	Se13, OsHY2, OsGUN3, GUN3, PS13,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
41606	25582452	Yu H., Murchie E.H., Gonz?lez-Carranza ZH., Pyke K.A., Roberts J.A.	Decreased photosynthesis in the ERECT PANICLE 3 (EP3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.	J. Exp. Bot.			2015	EP3,_	EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 
41607	25604991	Chen Z., Gao X., Zhang J.	Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway.	Plant Cell Rep.	34(5)	767-81	2015	D14,MIR156E,D27,D3	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,d27(d t), dt, dwf23, d27, OsD27,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3
41608	25641188	Wang D., Liu H., Li S., Zhai G., Shao J., Tao Y.	Characterization and molecular cloning of a Serine hydroxymethyltransferase 1 (osshm1) in rice.	J Integr Plant Biol			2015	_,_,_,_,_	OsSHM1, SHM1, OsSHMT1, SHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3,OsSHM3, SHM3, OsSHMT3, SHMT3, OsSHTM5, SHTM5,OsSHM5, SHM5, OsSHMT5, SHMT5, OsSHTM2, SHTM2,OsSHM2, SHM2, OsSHMT2, SHMT2, OsSHTM4, SHTM4,OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1
41609	25634963	Ohashi M., Ishiyama K., Kojima S., Konishi N., Nakano K., Kanno K., Hayakawa T., Yamaya T.	Asparagine Synthetase1, but not Asparagine Synthetase2, is Responsible for the Biosynthesis of Asparagine Following the Supply of Ammonium to Rice Roots.	Plant Cell Physiol.	56(4)	769-78	2015	ASN1,ASN	OsASN1, OsAS1, AS1,OsASN2, OsAS, OsAS2, AS2
41610	25600999	Park Y.C., Kim J.J., Kim D.S., Jang C.S.	Rice RING E3 ligase may negatively regulate gamma-ray response to mediate the degradation of photosynthesis-related proteins.	Planta	241(5)	1119-29	2015	_,_,RBCS,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsRFPH2-13,OsRFPH2-3,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsDNLZ1, DNLZ1,OsRFPV-6,OsRFPH2-2,OsPPT1, PPT1,OsrbcL1, rbcL1,OsRFPH2-6,OsRFPHC-1, OsNLA2, NLA2 ,OsRFPHC-16,OsRFPH2-16, OsGIRP1,OsRFPH2-18,OsRFPHC-8,Os4NPP1, 4NPP1,OsRFPV-1,OsRFPH2-7,OsRFPH2-5,OsRFPH2-15,OsRFPHC-4,OsMSR1, MSR1, OsMSRB5, MSRB5
41611	25617720	Wang S., Sun Z., Wang H., Liu L., Lu F., Yang J., Zhang M., Zhang S., Guo Z., Bent A.F., Sun W.	Rice OsFLS2-Mediated Perception of Bacterial Flagellins Is Evaded by Xanthomonas oryzae pvs. oryzae and oryzicola.	Mol Plant			2015	_	Os-FLS2, FLS2, OsFLS2
41612	25625819	Katsuragi Y., Takai R., Furukawa T., Hirai H., Morimoto T., Katayama T., Murakami T., Che F.S.	CD2-1, the C-terminal region of flagellin, modulates the induction of immune responses in rice.	Mol. Plant Microbe Interact.			2015	_,_,_,PSBY,_,PR1-72,PAL1,_,PR10A,WRKY70,CHT1,CDPK9	OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116 ,Os-FLS2, FLS2, OsFLS2,,PsbY,,OsPR1#072, OsPR1-72, PR1L, OsPR1L,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsMPK20-4, OsWJUMK, WJUMK, OsWJUMK1, WJUMK1, MAPK8, OsMPK8, MPK8,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY70,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsCDPK9, OsCPK9, CPK9
41613	25682936	Hu J., Xiao C., Cheng M.X., Gao G.J., Zhang Q.L., He Y.Q.	A new finely mapped Oryza australiensis-derived QTL in rice confers resistance to brown planthopper.	Gene	561(1)	132-7	2015		
41614	25724637	Sun J., Miller J.B., Granqvist E., Wiley-Kalil A., Gobbato E., Maillet F., Cottaz S., Samain E., Venkateshwaran M., Fort S., Morris R.J., An? JM., D?nari? J., Oldroyd G.E.	Activation of symbiosis signaling by arbuscular mycorrhizal fungi in legumes and rice.	Plant Cell	27(3)	823-38	2015		
41615	25724641	Chen J., Wang Y., Wang F., Yang J., Gao M., Li C., Liu Y., Liu Y., Yamaji N., Ma J.F., Paz-Ares J., Nussaume L., Zhang S., Yi K., Wu Z., Wu P.	The rice CK2 kinase regulates trafficking of phosphate transporters in response to phosphate levels.	Plant Cell	27(3)	711-23	2015	_,PT8,_,PT2,PHF1	OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3,OsPT8, PHT1-8, OsPht1;8, Pht1;8,CK2beta3,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPHF1, OsWD40-137, OsSEC12
41616	25713090	van der Heijden MG., Schlaeppi K.	Root surface as a frontier for plant microbiome research.	Proc. Natl. Acad. Sci. U.S.A.	112(8)	2299-300	2015		
41617	25688880	Pooja S., Sweta K., Mohanapriya A., Sudandiradoss C., Siva R., Gothandam K.M., Babu S.	Homotypic clustering of OsMYB4 binding site motifs in promoters of the rice genome and cellular-level implications on sheath blight disease resistance.	Gene	561(2)	209-18	2015	_,_,_,_,WRKY102,_	,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8,,OsSTA258,OsWRKY102,prx75
41618	25675495	Tamaki S., Tsuji H., Matsumoto A., Fujita A., Shimatani Z., Terada R., Sakamoto T., Kurata T., Shimamoto K.	FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(8)	E901-10	2015	RFT1,BZIP77,RAP1A,GF14B,HD3A	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsbZIP77, OsFD1, FD1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,GF14b, OsGF14b, 14-3-3b,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
41619	25659749	Quain M.D., Makgopa M.E., Cooper J.W., Kunert K.J., Foyer C.H.	Ectopic phytocystatin expression increases nodule numbers and influences the responses of soybean (Glycine max) to nitrogen deficiency.	Phytochemistry	112	179-87	2015	OC1	Oc1*, Oc1, OC-I, SPOC-I, OsCP1, Oc, OCI, OsCYS1
41620	25599895	Chen G., Feng H., Hu Q., Qu H., Chen A., Yu L., Xu G.	Improving rice tolerance to potassium deficiency by enhancing OsHAK16p:WOX11-controlled root development.	Plant Biotechnol. J.			2015	WOX11,HAK16	OsWOX11, Os WOX11, OsWOX12A,OsHAK16
41621	25595546	Fukayama H., Koga A., Hatanaka T., Misoo S.	Small subunit of a cold-resistant plant, timothy, does not significantly alter the catalytic properties of Rubisco in transgenic rice.	Photosyn. Res.	124(1)	57-65	2015		
41622	25636203	Wu T.M., Lin W.R., Kao C.H., Hong C.Y.	Gene knockout of glutathione reductase 3 results in increased sensitivity to salt stress in rice.	Plant Mol. Biol.	87(6)	555-64	2015	_	OsGR3, GR3
41623	25607719	Domiciano G., Cacique I., Freitas C., Filippi M., DaMatta F.M., Vale F., Rodrigues F.	Alterations in gas exchange and oxidative metabolism in rice leaves infected by Pyricularia oryzae are attenuated by silicon.	Phytopathology			2015		
41624	25664791	Huang D., Zhang Y., Zhao Y., Liu J., Peng Y.L.	Expression, purification, crystallization and preliminary X-ray diffraction analysis of the effector-interaction domain of the resistance protein RGA5-A from Oryza sativa L. japonica.	Acta Crystallogr F Struct Biol Commun	71(Pt 2)	171-4	2015	_	Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5
41625	25848690	Sun Y., Ning T., Liu Z., Pang J., Jiang D., Guo Z., Song G., Yang D.	The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell.	BMC Plant Biol.	15	55	2015	_,_	OsSec18, Sec18,YK704, Os60sP0
41626	25462965	Manimaran P., Mangrauthia S.K., Sundaram R.M., Balachandran S.M.	Constitutive expression and silencing of a novel seed specific calcium dependent protein kinase gene in rice reveals its role in grain filling.	J. Plant Physiol.	174	41-8	2015	CDPK31	OsCDPK31, OsCPK31
41627	25691887	Wu Z., Ji J., Tang D., Wang H., Shen Y., Shi W., Li Y., Tan X., Cheng Z., Luo Q.	OsSDS is essential for DSB formation in rice meiosis.	Front Plant Sci	6	21	2015	SDS,_,RMC1,_	OsSDS, Orysa;SDS,OsMSH5, MSH5,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsZIP4, ZIP4, SPO22
41628	25765586	Ling S., Chen C., Wang Y., Sun X., Lu Z., Ouyang Y., Yao J.	The mature anther-preferentially expressed genes are associated with pollen fertility, pollen germination and anther dehiscence in rice.	BMC Genomics	16	101	2015	_,_,_,_,_,_,_,_,NAC136,_,_,_,XTH8,_,ABCG16,_,_,RLCK189,SIP1;2,CNGC6,_,PLDbeta2,_,BZIP16,_,_,_,_,_,BZIP2,_,HSP16.9B,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CIPK05,_,_,_,_,_,CNGC16,HAK6,_,PME32,_,_,_,ALDH2A,_,_,_,_,WSL4,_,_,_,_,_,GSL5,_,_,NAC10,_,_,LFL1,CML3,_,_,_,ROPGEF2,TIFY5,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,MC3,_,_,_,_,CHX4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,PLDdelta1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,MDR1,_,_,_,_,CNGC17,_,PT20,_,_,_,_,PDC3,_,_,_,_,_,_,_,_,AGPL4,_,_,_,_,TIFY8,_,_,ABCG28,RLCK342,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CHX1,MADS27,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CHX3,_,_,_,_,_,_,_,_,_,_,_,_,_,_,OSCA1.3,_,_,_,_,_,_,_	OsSTA272,OsFbox619, Os_F0190, OsSTA265,CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3,OsSTA179,OsSTA252,OsSTA263,OsSTA200,OsSTA240,ONAC136, OsSTA279,OsWD40-196, OsSTA276,OsSTA258,OsWD40-185, OsSTA253,OsXTH8, OsSTA207,OsPUB13, OsSTA182,OsABCG16, OsABCG16_1, OsABCG16_2, OsSTA183,OsNek3, OsSTA192,OsPP62, OsSTA117,OsRLCK189, OsSTA156,OsSIP1;2, OsSTA98,OsCNGC6, OsCNGC4, OsSTA107,OsCBSDUF3, OsSTA88,OsPLDbeta2, OsSTA86,OsWD40-48, OsSTA70,OsbZIP16, OsSTA51,OsATL16, OsSTA21,OsFbox095, OsFbox95, Os_F0274, OsSTA64,OsFbox006, OsFbox6, Os_F0083, OsFBX5, OsSTA12,OsPHS1b, OsPP4, OsSTA14,OsATL17, OsSTA19,OsbZIP02, OsbZIP2, OsSTA8,OsRFPHC-14, OsSTA9,Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3,Vatp, OsSTA154,OsSTA145, STA145,OsSTA17,OsSTA18,OsSTA55,OsSTA239,OsSTA61,OsSTA63,OsSTA60,OsSTA56,OsSTA59,OsSTA58,OsSTA37,OsSTA50,OsSTA54,OsSTA52,OsSTA45,OsSTA49,OsSTA38,OsSTA43,OsSTA39,OsSTA40,OsSTA24,OsSTA36,OsSTA35,OsSTA25,OsSTA32,OsSTA31,OsSTA27,OsCIPK05, CIPK5, OsCIPK5, OsSTA7,OsSTA23,OsSTA16,OsSTA15,OsSTA10,OsSTA5,OsCNGC16, OsCNGC8, OsSTA273,OsHAK6, OsSTA42,OsSTA28,OsPME32, OsSTA270,OsSTA244,OsSTA238,OsSTA174, RHS10,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsSTA224, STA224,OsSTA266,OsSTA225,OsSTA166,OsSTA65, STA65,OsSTA267,OsSTA175,OsSTA2, STA2, OsLPR5, LPR5,OsSTA176,OsSTA71, OsARID2, ARID2,OsGSL5, OsSTA170,OsSTA112,OsSTA227,ONAC010, ONAC10, OsSTA199,OsSTA113,OsBBX15, OsCCT19, OsS, OsSTA162, BBX15, CCT19, STA162,OsLFL1, OsSTA29, STA29,OsCML3, OsSTA271, OsCML3m, OsCML3s,OsSTA115,OsSTA114,OsSTA76,Os RopGEF2, OsRopGEF2, RopGEF2, OsSTA159,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188,OsSTA111,OsSTA105,OsSTA109,OsSTA177,OsSTA103,OsSTA143, STA143,OsSTA148,OsSTA78,OsSTA79,OsSTA96,OsSTA100,OsLOL1, OsSTA289, OsLSD1,OsSTA94,OsSTA95,OsSTA91,OsSTA93,OsSTA83,OsSTA203,OsSTA142,OsSTA248,OsSTA243,OsSTA232,OsSTA228,OsSTA236,OsSTA230,OsSTA231,OsSTA41, STA41,OsSTA197,OsMC3, OsSTA102,Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC,OsSTA215,OsSTA241,OsSTA72,OsSTA291, OsCHX04, CHX04, OsCHX4,OsSTA247,OsSTA216,OsETOL1, OsSTA97, ETOL1, STA97,OsSTA217,OsSTA222,OsSTA218,OsSTA219,OsSTA221,OsSTA195,OsSTA69,OsSTA213,OsSTA214,OsSTA209,OsSTA206,OsSTA68,OsSTA160,OsSTA205,OsTCP10, OsSTA77, TCP10, STA77,OsSTA157,OsSTA169,OsSTA275,OsPLDdelta1, OsPLDdelta, OsSTA233,OsDjB9, OsSTA211,OsSTA201,OsSTA30,OsSTA33,OsSTA44,OsSTA132,OsSTA82, STA82, OsPOP6, POP6,OsSTA262,OsSTA268,OsSTA184,OsSTA186,OsSTA191,OsSTA194,OsSTA189,OsSTA187,OsSTA185,OsSTA124,OsSTA134,OsSTA208,OsSTA155,OsSTA164,OsSTA161,OsSTA152,OsSTA141,OsSTA140,OsSTA150,OsSTA128,OsSTA133,OsSTA138,OsSTA130,OsSTA122,OsSTA13,OsSTA123,OsSTA120,OsSTA121,OsSTA119,OsSTA118,OsUGlcAE5, UGlcAE5, OsSTA172,OsSTA173,OsSTA4, OsRhmbd1, RHMBD1,OsSTA106,Orysa;CKL1, OsSTA287,OsSTA190,OsSTA165,Orysa;CKL8, OsSTA277,OsWD40-183, OsSTA251,OsSTA260,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsSTA89, STA89, OsDUF810.1, DUF810.1 ,OsSTA254, STA254 OsSEC3B, SEC3B ,OsPFA-DSP4, OsSTA281,OsSTA250,OsCNGC17, OsCNGC5, OsSTA282,OsSTA180,OsSTA235, OsPT20,OsGRL10, GRL10, OsSTA146, STA146,OsSTA204,OsSTA139,OsSTA108,pdc3*, pdc3, OsPDC3, OsSTA202,OsSTA67,OsSTA90,OsSTA87,OsSTA22,OsSTA135, STA135, OsODD21, ODD21, 2-ODD21, Os2-ODD21, Os2ODD21,OsFbox443, Os_F0084, OsSTA212,OsSTA147, STA147,OsSTA137,OsAGPL4, APL4, OsAPL4, OsSTA193,OsSTA264, STA264, Duf6, qSCT11 ,OsSTA223, STA223,OsFbox023, OsFbox23, Os_F0211, OsSTA20,OsCCT02, OsCMF2, OsSTA46,OsJAZ12, OsTIFY8, OsSTA75,OsFbox542, Os_F0480, OsSTA237,OsOFP31, OsOFP26, OsSTA245,OsABCG28, OsSTA255,OsRLCK342, OsSTA269,OsSTA6,OsSTA34,OsSTA48,OsSTA53,OsSTA57,OsSTA62,OsSTA74,OsSTA81,OsSTA84,OsSTA92,OsSTA101,OsSTA104,OsSTA110,OsSTA116,OsSTA26,OsSTA85, STA85, OsCHX01, CHX01, OsCHX1,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsSTA261,OsSTA278,OsSTA126,OsSTA129,OsSTA131,OsSTA136,OsSTA151,OsSTA153,OsSTA163,OsSTA181,OsSTA196,OsSTA210,OsSTA220,OsSTA226,OsSTA229,OsSTA242,OsSTA249,OsSTA11, OsRFP,OsSTA198, STA198, OsFH11, FH11,OsSTA234, STA234, OsCHX03, CHX03, OsCHX3,OsSTA274,OsSTA144, STA144,OsSTA127, STA127,OsSTA80,OsSTA168,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2,OsSTA178, STA178,OsSTA99,OsSTA256,OsSTA288,OsSTA290,OsSTA259,OsSTA171,OsSTA158,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsSTA280,OsSTA283,OsSTA167,OsSTA257,OsSTA284,OsSTA286,OsSTA285
41629	25667045	Fang H., Meng Q., Xu J., Tang H., Tang S., Zhang H., Huang J.	Knock-down of stress inducible OsSRFP1 encoding an E3 ubiquitin ligase with transcriptional activation activity confers abiotic stress tolerance through enhancing antioxidant protection in rice.	Plant Mol. Biol.	87(4-5)	441-58	2015	_,_,_,_	,OsRZFP34, OsRFP1, RZFP34, RFP1,,OsSRFP1, SRFP1
41630	25693492	Singh B.P., Jayaswal P.K., Singh B., Singh P.K., Kumar V., Mishra S., Singh N., Panda K., Singh N.K.	Natural allelic diversity in OsDREB1F gene in the Indian wild rice germplasm led to ascertain its association with drought tolerance.	Plant Cell Rep.			2015	DREB1F	OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F
41631	25697101	Lu Z., Shao G., Xiong J., Jiao Y., Wang J., Liu G., Meng X., Liang Y., Xiong G., Wang Y., Li J.	MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.	J Genet Genomics	42(2)	71-8	2015	_,RR10,RR1,RR24,WOX1,RR9,_,_	OsTPR3, TPR3,OsRR10, Rra2, OsRRA2, RR2,rr1, OsRR1, Rra9, OsRRA9,OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsTPR2, TPR2,OsTPR1, TPR1
41632	25687295	Sebastian A., Prasad M.N.	Operative photo assimilation associated proteome modulations are critical for iron-dependent cadmium tolerance in Oryza sativa L.	Protoplasma			2015	YSL18,IRT1,YSL15,IRT2	OsYSL18, OsYs2 ,OsIRT1,OsYSL15, OsYs7,OsIRT2, OsIRT1
41633	25675970	Zheng M., Wang Y., Wang Y., Wang C., Ren Y., Lv J., Peng C., Wu T., Liu K., Zhao S., Liu X., Guo X., Jiang L., Terzaghi W., Wan J.	DEFORMED FLORAL ORGAN1 (dfo1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).	New Phytol.	206(4)	1476-90	2015	_,MADS58,IEZ1,_	DFO1, EMF1, OsDFO1, OsEMF1, CCP1, OsCCP1,OsMADS58,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718,OsWD40-79, OsMSI1, WD40-79, MSI1
41634	25676661	Ji H., Gheysen G., Ullah C., Verbeek R., Shang C., De Vleesschauwer D., H?fte M., Kyndt T.	The role of thionins in rice defence against root pathogens.	Mol. Plant Pathol.			2015	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsTHI32, THI32,OsTHI26, THI26,OsTHI1, THI1, Osthi2, thi2,OsTHI39, THI39,,OsTHI29, THI29,OsTHI5, THI5, Osthi5,OsTHI31, THI31,OsTHI6, THI6,OsTHI3, THI3, Osthi1, thi1,OsTHI34, THI34,Osthi4, thi4,OsTHI28, THI28,OsTHI2, THI2, Osthi3, thi3,,OsTHI21, THI21,OsTHI30, THI30,OsTHI7, THI7,OsTHI36, THI36,,OsTHI9, THI9, Osthi1, thi1,,OsTHI20, THI20,OsTHI8, THI8,OsTHI38, THI38,OsTHI41, THI41
41635	25702710	Zhang F., Sun Y., Pei W., Jain A., Sun R., Cao Y., Wu X., Jiang T., Zhang L., Fan X., Chen A., Sun S., Xu G.	Involvement of OsPht1;4 in phosphate acquisition, and mobilization facilitates embryo development in rice.	Plant J.			2015	PT8,PT4,INO1,PT1,_	OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsIPK1, IPK1
41636	25804812	Ma K., Zhang D., Liu Y., Ouyang Y., Li J., Hu C., Yao J.	Ectopic expression of EbFIE from apomictic Eulaliopsis binata in rice results in pleiotropic phenotypes likely due to interaction with OsCLF.	Plant Sci.	234	86-96	2015	CLF,FIE2,FIE1	OsSET24, SDG711, EZ1, OsCLF,OsFIE2, FIE, OsWD40-153,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 
41637	25677853	Liu Q., Shen G., Peng K., Huang Z., Tong J., Kabir M.H., Wang J., Zhang J., Qin G., Xiao L.	A T-DNA insertion mutant Osmtd1 was altered in architecture by upregulating MicroRNA156f in rice.	J Integr Plant Biol			2015	WFP,MIR156F,SPL12,SPL3,_	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,OsSPL12,OsSPL3,Osmtd1
41638	25647508	Cai S., Jiang G., Ye N., Chu Z., Xu X., Zhang J., Zhu G.	A key ABA catabolic gene, OsABA8ox3, is involved in drought stress resistance in rice.	PLoS ONE	10(2)	e0116646	2015	ABA8OX3	OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3
41639	25717038	Izumi M., Hidema J., Wada S., Kondo E., Kurusu T., Kuchitsu K., Makino A., Ishida H.	Establishment of Monitoring Methods for Autophagy in Rice Reveals Autophagic Recycling of Chloroplasts and Root Plastids during Energy Limitation.	Plant Physiol.	167(4)	1307-20	2015	ATG7,ATG8B,ATG8C,ATG8E,ATG8,RBCS	OsATG7, Atg7,OsATG8b, Atg8b,OsATG8c,OsATG8e, OsATG8d, Atg8d,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1
41640	25711711	Xu C., Liu Y., Li Y., Xu X., Xu C., Li X., Xiao J., Zhang Q.	Differential expression of GS5 regulates grain size.in rice.	J. Exp. Bot.	66(9)	2611-23	2015	SCP53,SCP15,SCP13,_,SCP12,SCP33,SCP44,SCP7,SCP27,SCP32,_,_,SCP5,SCP37,SCP51,SCP66,SCP48,SCP17,SCP49,SCP11,SCP25,SCP56,SCP42,SCP52,SCP61,SCP59,_,SCP14,SCP31,SCP38,SCP30,_,SCP21,SCP19,SCP63,SCP2,SCP29,_,GS5,SCP8,SCP54,CPD3L,SCP23,SCP24,SCP20,TMS10,SCP45,_,SCP47,SCP3,SCP4,SCP9,SCP41,SCP64,SCP36,SCP40,SCP16,SCP1,SCP18,SCP22,SCP34,CPD2B,CPD1,MSBP2,_,SCP43,SCP35,_,CPD3,SCP57	OsSCP53,OsSCP15,OsSCP13,OsSERL4, OsBAK1-9, Docs1,OsSCP12,OsSCP33,OsSCP44,OsSCP7,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsSCP32,OsSERL2, SERL2, SERK1, OsBAK1-7, BAK1-7,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsSCP5,OsSCP37,OsSCP51,OsSCP66,OsSCP48,OsSCP17,OsSCP49, OsSCP50, SCP50,OsSCP11,OsSCP25,OsSCP56,OsSCP42,OsSCP52,OsSCP61, OsSCP62, SCP62,OsSCP59, OsSCP60, SCP60,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OsSCP14,OsSCP31,OsSCP38,OsSCP30,OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3,OsSCP21,OsSCP19,OsSCP63,OsSCP2, SCP3, OsSCP3,OsSCP29,OsBAK1-10,OsSCP26, SCP26, OsGS5,OsSCP8,OsSCP54, OsSCP55, SCP55,R-CPD3L, cbp31, OsSCP39, SCP39,OsSCP23,OsSCP24,OsSCP20,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsSCP45, OsSCP46, SCP46,OsSERL5, OsBAK1-4, SERK1,OsSCP47,OsSCP3,OsSCP4,OsSCP9,OsSCP41,OsSCP64,OsSCP36,OsSCP40,OsSCP16,OsSCP1,OsSCP18,OsSCP22,OsSCP34,OsSCP10, SCP10,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsMSBP2, OsMSBP1 ,OsSERL1, OsBAK1-8,OsSCP43,OsSCP35,OsSERL8, OsBAK1-6, SERL8, BAK1-6, TMS10L,cbp3, R-CPD3, OsSCP6, SCP6,OsSCP57, OsSCP58, SCP58
41641	25757473	Matsuzaki J., Kawahara Y., Izawa T.	Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.	Plant Cell	27(3)	633-48	2015	HD2,_,_,SE1,_,_,_,GI,HD3B,TOC1,PHYB,_,_,ELF3.2,ZTL2,PRR95,PHYC,PHYA,_,_,PCL1,CCA1,PRR59,FKF1,PRR73	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,ELF4_chr.3,OsCRY1a, OsCRY1, CRY1a, CRY2 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,ELF4_chr.8,OsCRY1b, OsCRY2, CRY1b, CRY1 ,ELF4_chr.11,OsGI, Gi, Os-GI,Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,phyB, PHYB1, OsPHYB, OsphyB,LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35,EPR1, OsEPR1,ELF3_chr.1, OsELF3.2, ELF3.2,OsZTL2, OsFbox325, Os_F0374, ZTL1 ,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsPHYC, OsPHYCa, OsPHYCb,phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA ,OsMyb1R, LHY-like_chr.2,OsTCP7, CHE, TCP7,OsPCL1,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsFbox609, Os_F0370, OsFKF1,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11
41642	25791495	Zhao R., Sun H., Zhao N., Jing X., Shen X., Chen S.	The Arabidopsis Ca(2+)-dependent protein kinase CPK27 is required for plant response to salt-stress.	Gene	563(2)	203-14	2015		
41643	25733849	Xie K., Minkenberg B., Yang Y.	Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system.	Proc. Natl. Acad. Sci. U.S.A.	112(11)	3570-5	2015		
41644	25769309	Li J., Han Y., Liu L., Chen Y., Du Y., Zhang J., Sun H., Zhao Q.	qRT9, a quantitative trait locus controlling root thickness and root length in upland rice.	J. Exp. Bot.	66(9)	2723-32	2015	_	OsbHLH120, bHLH120
41645	25743039	Yamada N., Theerawitaya C., Kageyama H., Cha-Um S., Takabe T.	Expression of developmentally regulated plasma membrane polypeptide (DREPP2) in rice root tip and interaction with Ca(2+)/CaM complex and microtubule.	Protoplasma			2015	_,_	OsDREPP2, DREPP2,OsDREPP1, DREPP1, RS1
41646	25809382	Carbonell A., Fahlgren N., Mitchell S., Cox K.L., Mockler T.C., Carrington J.C.	Highly Specific Gene Silencing in a Monocot Species by Artificial MicroRNAs Derived From Chimeric MIRNA Precursors.	Plant J.			2015	MIR390	OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p
41647	25617318	Wu H., Ye H., Yao R., Zhang T., Xiong L.	OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.	Plant Sci.	232	1-12	2015	_,HAK21,TIFY11A,HAK27,_,_,HKT8	OsbHLH1, OsbHLH062 ,OsHAK21,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsHAK27,OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,OsbHLH157, bHLH157,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
41648	25852730	Hu B., Wang W., Deng K., Li H., Zhang Z., Zhang L., Chu C.	MicroRNA399 is involved in multiple nutrient starvation responses in rice.	Front Plant Sci	6	188	2015	MIR399J,NAS1,LTN1,MIR399F,MIR399K,MIR399I,NAS2,HAK25,MIR399A,ACA6,CHX11,MIR399E,MIR399D	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsNAS1,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsmiR399f, osa-miR399f, osa-MIR399f, Os-miR399f,OsmiR399k, osa-MIR399k,OsmiR399i, osa-MIR399i, miR399i,OsNAS2,OsHAK25,OsmiR399a, osa-miR399a, osa-MIR399a, Os-miR399a, miR399a,osACA6, OsACA1, OsACA6, OsPM1ATPaseII,NaT, OsCHX11,OsmiR399e, osa-MIR399e,OsmiR399d, osa-miR399d, osa-MIR399d, Os-miR399d, miR399d
41649	25867332	Luan Z.H., Zhou D.W.	Screening of rice (Oryza sativa L.) OsPR1b-interacting factors and their roles in resisting bacterial blight.	Genet. Mol. Res.	14(1)	1868-74	2015	_,_,PR1B,_,_	,OsLSK1, LSK1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,prx78, PRX78, OsPRX78,OsPsbR3, PsbR3
41650	25738428	Matsui H., Takahashi A., Hirochika H.	Rice immune regulator, OsPti1a, is specifically phosphorylated at the plasma membrane.	Plant Signal Behav	10(3)	e991569	2015	_,_,RLCK178	OsOxi1,PDK1, OsPdk1, Pdk1,OsPti1a, OsRLCK178
41651	25788736	Deshpande G.M., Ramakrishna K., Chongloi G.L., Vijayraghavan U.	Functions for rice RFL in vegetative axillary meristem specification and outgrowth.	J. Exp. Bot.	66(9)	2773-84	2015	CUC1,NAM,CUC3,MOC1,PIN10A,D3,LAX1,RFL,PIN1B,D10,FC1	ONAC039, ONAC39, NAC39, OsCUC1,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2,OsCUC3, ONAC107, NAC107,moc1, OsMOC1, OsGRAS-33, OsGRAS33, GRAS-33, GRAS33,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
41652	25800365	Tamiru M., Undan J.R., Takagi H., Abe A., Yoshida K., Undan J.Q., Natsume S., Uemura A., Saitoh H., Matsumura H., Urasaki N., Yokota T., Terauchi R.	A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.).	Plant Mol. Biol.	88(1-2)	85-99	2015	_,CYP96D2,CYP96E1,CYP96D1,CYP96B10,CYP96B8,CYP96B7,CYP96B9,CYP96B6,CYP96B2,CYP96B5,SD37	MAH1, OsMAH1, OsCYP96B3, CYP96B3,OsCYP96D2,OsCYP96E1,OsCYP96D1,OsCYP96B10,OsCYP96B8,OsCYP96B7,OsCYP96B9,OsCYP96B6,OsCYP96B2,OsCYP96B5,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1
41653	25735958	Shi L., Guo M., Ye N., Liu Y., Liu R., Xia Y., Cui S., Zhang J.	Reduced ABA Accumulation in the root system is Caused by ABA Exudation in Upland Rice (Oryza sativa L. var. Gaoshan1) and this Enhanced Drought Adaptation.	Plant Cell Physiol.	56(5)	951-64	2015	NCED1,NCED1,ABA8OX1,ABA8OX2	OsNCED1, OsCCD4a, CCD4a,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2
41654	25750424	Rosas-Santiago P., Lagunas-G?mez D., Barkla B.J., Vera-Estrella R., Lalonde S., Jones A., Frommer W.B., Zimmermannova O., Sychrov? H., Pantoja O.	Identification of rice cornichon as a possible cargo receptor for the Golgi-localized sodium transporter OsHKT1;3.	J. Exp. Bot.	66(9)	2733-48	2015	_,HKT6,_	OsCNIH2, CNIH2,OsHKT6, OsHKT1;3, HKT1;3,OsCNIH1, CNIH1
41655	25807209	Nishizawa Y., Mochizuki S., Koiwai H., Kondo K., Kishimoto K., Katoh E., Minami E.	Rice ubiquitin ligase EL5 prevents root meristematic cell death under high nitrogen conditions and interacts with a cytosolic GAPDH.	Plant Signal Behav	10(3)	e990801	2015	_,GAPC,_,EL5	OsGapC1,OsGapC3, OGapC3, OsGAPDH1, GAPDH1,GAPDH, OsGAPDH, OsGapC2,EL5.1, EL5.2, EL5.3, EL5.4, EL5.5, EL5.6
41656	25807460	Deng Z.Y., Liu L.T., Li T., Yan S., Kuang B.J., Huang S.J., Yan C.J., Wang T.	OsKinesin-13A Is an Active microtubule depolymerase Involved in glume length Regulation via Affecting Cell Elongation.	Sci Rep	5	9457	2015	SRS3	OsSRS3, SAR1, OsSAR1
41657	25786829	Wada S., Hayashida Y., Izumi M., Kurusu T., Hanamata S., Kanno K., Kojima S., Yamaya T., Kuchitsu K., Makino A., Ishida H.	Autophagy supports biomass production and nitrogen use efficiency at the vegetative stage in rice.	Plant Physiol.	168(1)	60-73	2015	ATG7	OsATG7, Atg7
41658	25772680	Tuteja N., Tarique M., Trivedi D.K., Sahoo R.K., Tuteja R.	Stress-induced Oryza sativa BAT1 dual helicase exhibits unique bipolar translocation.	Protoplasma			2015	AIP1	AIP1, Os AIP1, OsAIP1, OsRH56, OsBAT1, UAP56, OsUAP56, OsBAT1/UAP56
41659	25760462	Yu H., Jiang W., Liu Q., Zhang H., Piao M., Chen Z., Bian M.	Expression pattern and subcellular localization of the ovate protein family in rice.	PLoS ONE	10(3)	e0118966	2015	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsOFP26, OsOFP29,OsOFP27, OsOFP02,OsOFP7, OsOFP11,OsOFP31, OsOFP26, OsSTA245,OsOFP16, OsOFP24,OsOFP20, OsOFP31,OsOFP19, OsOFP30,OsOFP9, OsOFP13,OsOFP12, OsOFP17,OsOFP8, OsOFP12,OsOFP5, OsOFP07,OsOFP22, OsOFP05,OsOFP18, OsOFP28,OsOFP24, OsOFP15,OsOFP3, OsOFP04,OsOFP15, OsOFP22,OsOFP28, OsOFP25,OsOFP17, OsOFP27,OsOFP14, OsOFP21,OsOFP10, OsOFP14, OFP10, OFP14,OsOFP2, OsOFP03, OFP2,OsOFP4, OFP4, OsOFP06, OsOFP6, OFP6,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,OsOFP1, OsOFP01, OFP1,OsOFP29, OsOFP18,OsOFP6, OsOFP09,OsOFP21, OsOFP10,OsOFP11, OsOFP16,OsOFP23, OsOFP20,OsOFP25, OsOFP23,OsOFP13, OsOFP19, OFP13, OFP19
41660	25824047	Tezuka D., Ito A., Mitsuhashi W., Toyomasu T., Imai R.	The rice ent-KAURENE SYNTHASE LIKE 2 encodes a functional ent-beyerene synthase.	Biochem. Biophys. Res. Commun.	460(3)	766-71	2015	KS2	OsKS2, KS2, KSL2, OsKSL2, OsTPS27
41661	25841037	Yin C.C., Ma B., Collinge D.P., Pogson B.J., He S.J., Xiong Q., Duan K.X., Chen H., Yang C., Lu X., Wang Y.Q., Zhang W.K., Chu C.C., Sun X.H., Fang S., Chu J.F., Lu T.G., Chen S.Y., Zhang J.S.	Ethylene responses in rice roots and coleoptiles are differentially regulated by a carotenoid isomerase-mediated abscisic Acid pathway.	Plant Cell	27(4)	1061-81	2015	_	OsCRTISO, MHZ5, MHZ5/CRTISO, CRTISO
41662	25901084	Yan J., Aboshi T., Teraishi M., Strickler S.R., Spindel J.E., Tung C.W., Takata R., Matsumoto F., Maesaka Y., McCouch S.R., Okumoto Y., Mori N., Jander G.	The tyrosine aminomutase TAM1 Is Required for beta-Tyrosine Biosynthesis in Rice.	Plant Cell	27(4)	1265-78	2015	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM
41663	25901086	Mach J.	Production of the Non-Protein Amino Acid beta-Tyrosine in Rice.	Plant Cell	27(4)	949	2015	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM
41664	25895479	Wang Y., Wang Q., Zhao Y., Han G., Zhu S.	Systematic analysis of maize class III peroxidase gene family reveals a conserved subfamily involved in abiotic stress response.	Gene			2015		
41665	25841039	Tanaka W., Ohmori Y., Ushijima T., Matsusaka H., Matsushita T., Kumamaru T., Kawano S., Hirano H.Y.	Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.	Plant Cell	27(4)	1173-84	2015	WOX4,WOX1,OSH1	OsWOX4, Os WOX4,Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
41666	25893776	Bashir K., Ishimaru Y., Itai R.N., Senoura T., Takahashi M., An G., Oikawa T., Ueda M., Sato A., Uozumi N., Nakanishi H., Nishizawa N.K.	Iron deficiency regulated OsOPT7 is essential for iron homeostasis in rice.	Plant Mol. Biol.	88(1-2)	165-76	2015	NAS3,_,_,NAS2,ZIFL5,IRT2,NAS1,YSL15,FER1,FER2,NRAMP1,FRO2,_	OsNAS3,OsMIR, MIR ,OPT, OsOPT7, OPT7,OsNAS2,OsZIFL5, OsTOM2, TOM2,OsIRT2, OsIRT1,OsNAS1,OsYSL15, OsYs7,OsFER1, OsFer1 ,OsFER2, OsFer2,OsNramp1, OsNRAMP1, OsNramp6,OsFRO2,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
41667	25922483	Li T., Jiang J., Zhang S., Shu H., Wang Y., Lai J., Du J., Yang C.	OsAGSW1, an ABC1-like kinase gene, is involved in the regulation of grain size and weight in rice.	J. Exp. Bot.			2015	_	OsAGSW1, AGSW1
41668	25711814	Li S., Pan X.X., Berry J.O., Wang Y., Naren, Ma S., Tan S., Xiao W., Zhao W.Z., Sheng X.Y., Yin L.P.	OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.	Plant Sci.	233	61-71	2015	AHA2,_	OSA2, OsA2, osAHA2, AHA2, OsPMA2,OsSEC24, OsSEC27, SEC24, SEC27
41669	25886365	Singh A., Jha S.K., Bagri J., Pandey G.K.	ABA Inducible Rice Protein Phosphatase 2C Confers ABA Insensitivity and Abiotic Stress Tolerance in Arabidopsis.	PLoS ONE	10(4)	e0125168	2015	PP2C1	OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108
41670	25754802	Chen X., Lu S., Wang Y., Zhang X., Lv B., Luo L., Xi D., Shen J., Ma H., Ming F.	OsNAC2 encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice.	Plant J.	82(2)	302-14	2015	KAO,ERF102,SLRL1,NAC2,HD3A,KO4	OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2
41671	25850808	Han S.H., Yoo S.C., Lee B.D., An G., Paek N.C.	Rice FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (OsFKF1) promotes flowering independent of photoperiod.	Plant Cell Environ.			2015	RDD2,DOF21,FKF1,EF1,GHD7,GI,EHD2/RID1,RDD4	OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3,OsDof21, Dof21, OsDof-21, OsCDF2, CDF2 ,OsFbox609, Os_F0370, OsFKF1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsGI, Gi, Os-GI,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12
41672	25903544	Wan C., Li C., Ma X., Wang Y., Sun C., Huang R., Zhong P., Gao Z., Chen D., Xu Z., Zhu J., Gao X., Wang P., Deng X.	GRY79 encoding a putative metallo-beta-lactamase-trihelix chimera is involved in chloroplast development at early seedling stage of rice.	Plant Cell Rep.			2015	GRY79	OsGRY79, OsMSL12, MSL12
41673	25711812	Wu Y.P., Pu C.H., Lin H.Y., Huang H.Y., Huang Y.C., Hong C.Y., Chang M.C., Lin Y.R.	Three novel alleles of FLOURY ENDOSPERM2 (flo2) confer dull grains with low amylose content in rice.	Plant Sci.	233	44-52	2015	AGPL2,SBE3,WX1,ISA1,SBE1,PUL,AGPS2,FLO2	OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,OsPUL, SDBE, OsPUL3, RE,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 
41674	25902049	E Z., Zhang Y., Li T., Wang L., Zhao H.	Characterization of the Ubiquitin-Conjugating Enzyme Gene Family in Rice and Evaluation of Expression Profiles under Abiotic Stresses and Hormone Treatments.	PLoS ONE	10(4)	e0122621	2015	UBC43,UBC40,UBC37,UBC5B,UBC42,UBC8,UBC27,UBC,UBC41,UBC34,UBC12,UBC23,UBC44,UBC36,UBC48,UBC11,_,UBC4,_,UBC3,UBC6,UBC18,UBC5A,UBC26,_,LTN1,UBC22,_,UBC46,UBC10,UBC45,UBC7,UBC13,UBC17,UBC25,UBC5,UBC33,UBC39,_	OsUBC43,OsUBC40,OsUBC37,OsUBC5b, OsUBC15, UBC15,OsUBC42,OsUBC8,OsUBC27,UBC, OsUBC32, UBC32,OsUBC41,OsUBC34,OsUBC12,OsUBC23,OsUBC44,OsUBC36,OsUBC48,OsUBC11,Dhr6, OsUBC5b, OsUBC16, UBC16,OsUBC4,Rad6, OsRad6, Dhr6, OsUBC9, UBC9,OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2,OsUBC6,OsUBC18,OsUBC5a, OsUBC14, UBC14,OsUBC26,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsUBC22,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,OsUBC46,OsUBC10,OsUBC45,OsUBC7,OsUBC13,OsUBC17,OsUBC25,OsUBC5,OsUBC33,OsUBC39,OsUbc13, Ubc13, OsUBC47, UBC47
41675	25856151	Singh P., Mohanta T.K., Sinha A.K.	Unraveling the Intricate Nexus of Molecular Mechanisms Governing Rice Root Development: OsMPK3/6 and Auxin-Cytokinin Interplay.	PLoS ONE	10(4)	e0123620	2015	PIN1B,PIN9,MSRMK2,MKK5,SMG1,MAPK6	PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN9,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMKK5, BUD1, OsBUD1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6
41676	25925167	Mukhopadhyay P., Tyagi A.K., Tyagi A.K.	OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.	Sci Rep	5	9998	2015	ERF117,_,_,_	OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4,OsDGAT,OsTCP19, TCP19,OsULT1
41677	25893869	Ding W., Lin L., Zhang B., Xiang X., Wu J., Pan Z., Zhu S.	OsKASI, a beta-ketoacyl-[acyl carrier protein] synthase I, is involved in root development in rice (Oryza sativa L.).	Planta			2015	_	OsKASI, KASI
41678	25863286	Komvongsa J., Luang S., Marques J.V., Phasai K., Davin L.B., Lewis N.G., Ketudat Cairns JR.	Active site cleft mutants of Os9BGlu31 transglucosidase modify acceptor substrate specificity and allow production of multiple kaempferol glycosides.	Biochim. Biophys. Acta	1850(7)	1405-1414	2015	BGLU31	Os9bglu31, Os9BGlu31 
41679	25907566	R Taylor M., Reinders A., M Ward J.	Transport Function of Rice Amino Acid Permeases (AAPs).	Plant Cell Physiol.			2015	_,_,_,_	OsAAP6, AAP6, OsAAP1, AAP1,OsAAP11A, AAP11A, OsAAP16, AAP16,OsAAP12A, AAP12A, OsAAP3, AAP3,OsAAP11F, AAP11F, OsAAP7, AAP7, FCO7
41680	25855237	Tianpei X., Mao Z., Zhu Y., Li S.	Expression of Rice Mature Carbonic Anhydrase Gene Increase E. coli Tolerance to Heat Stress.	Appl. Biochem. Biotechnol.			2015	BETACA1	OsCA, CA, OsbetaCA1, betaCA1
41681	25847193	Lee S.S., Park H.J., Yoon D.H., Kim B.G., Ahn J.C., Luan S., Cho H.S.	Rice cyclophilin OsCYP18-2 is translocated to the nucleus by an interaction with SKIP and enhances drought tolerance in rice and Arabidopsis.	Plant Cell Environ.			2015	CYP18-2,SKIPA	OsCYP18-2, OsCYP-23, OsCYP18-2a, OsCYP18-2b, OsCYP18-2c, SIP12 ,OsSKIPa, OsSKIP, SKIP
41682	25711810	Li J., Qin R.Y., Li H., Xu R.F., Qiu C.H., Sun Y.C., Ma H., Yang Y.C., Ni D.H., Li L., Wei P.C., Yang J.B.	Identification and analysis of the mechanism underlying heat-inducible expression of rice aconitase 1.	Plant Sci.	233	22-31	2015	_	OsACO1, ACO1
41683	25923512	Li Y., Ouyang J., Wang Y.Y., Hu R., Xia K., Duan J., Wang Y., Tsay Y.F., Zhang M.	Disruption of the rice nitrate transporter OsNPF2.2 hinders root-to-shoot nitrate transport and vascular development.	Sci Rep	5	9635	2015	PTR2	OsPTR2, OsNPF2.2, NPF2.2
41684	25807334	Kumar S., Asif M.H., Chakrabarty D., Tripathi R.D., Dubey R.S., Trivedi P.K.	Comprehensive analysis of regulatory elements of the promoters of rice sulfate transporter gene family and functional characterization of OsSul1;1 promoter under different metal stress.	Plant Signal Behav	10(4)	e990843	2015	SULTR5;2,SULTR1;1,SULTR2;2,SULTR2;1,LPA,SULTR3;4,SULTR1;3,SULTR1;2,SULTR4;1,SULTR3;5,SULTR3;1,SULTR3;6,SULTR5;1,SULTR3;2	OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,OsSultr3;3, OsSul3;3, SULTR3;3 ,OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT,OsSultr1;3, OsSul1;3,OsSultr1;2, OsSul1;2,OsSultr4;1, OsSul4;1, OsSultr4;1(a), OsSultr4;1(b), OsSultr4;1(c), OsSultr4;1(d),OsSultr3;5, OsSul3;5,OsSultr3;1, OsSul3;1,OsSultr3;6, OsSul3;6, OsSULTR3;6 ,OsSultr5;1, OsSul5;1,OsSultr3;2, OsSul3;2
41685	25854544	Song W.Y., Lee H.S., Jin S.R., Ko D., Martinoia E., Lee Y., An G., Ahn S.N.	Rice PCR1 influences grain weight and Zn accumulation in grains.	Plant Cell Environ.			2015	_	OsFWL5, FWL5, OsPcr1, PCR1, OsPCR1
41686	25910649	Tiwari L.D., Mittal D., Chandra Mishra R., Grover A.	Constitutive over-expression of rice chymotrypsin protease inhibitor gene OCPI2 results in enhanced growth, salinity and osmotic stress tolerance of the transgenic Arabidopsis plants.	Plant Physiol. Biochem.	92	48-55	2015	OCPI2	OsSRO1a, SRO1a
41687	25869654	Liu L., Paulitz J., Pauly M.	The presence of fucogalactoxyloglucan and its synthesis in rice indicates conserved functional importance in plants.	Plant Physiol.			2015		
41688	25860838	Gutjahr C., Siegler H., Haga K., Iino M., Paszkowski U.	Full establishment of arbuscular mycorrhizal symbiosis in rice occurs independently of enzymatic jasmonate biosynthesis.	PLoS ONE	10(4)	e0123422	2015		
41689	25855537	Jin J., Shi J., Liu B., Liu Y., Huang Y., Yu Y., Dong A.	MRG702, a reader protein of H3K4me3 and H3K36me3, is involved in brassinosteroid-regulated growth and flowering time control in rice.	Plant Physiol.			2015	SDG725,D11,RFT1,EF1,D61,_,HD3A,MADS50,_,EHD2/RID1,BU1,EHD3	OsSDG725, OsSET8, ASHH2,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,MRG702, OsMRG702,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,MRG701, OsMRG701,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,Ehd3
41690	25884488		Correction: The RhoGAP SPIN6 Associates with SPL11 and OsRac1 and Negatively Regulates Programmed Cell Death and Innate Immunity in Rice.	PLoS Pathog.	11(4)	e1004807	2015	_,_,SPL11,_,_,_,RAC1	SPIN6, Spin6, SIP11 ,OsSgt1, SGT1, OsSGT1, Os SGT1,spl11, spl11*, OsPUB11, PUB11,Spin6.3,Spin6.2,RAR1, Os RAR1, OsRAR1,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
41691	25896119	Chen J., Li C., Yang Z.	Identification and Expression of Two Novel Cytochrome P450 Genes, CYP6CV1 and CYP9A38, in Cnaphalocrocis medinalis (Lepidoptera: Pyralidae).	J. Insect Sci.	15(1)		2015		
41692	25869921	Khanna A., Sharma V., Ellur R.K., Shikari A.B., Gopala Krishnan S., Singh U.D., Prakash G., Sharma T.R., Rathour R., Variar M., Prashanthi S.K., Nagarajan M., Vinod K.K., Bhowmick P.K., Singh N.K., Prabhu K.V., Singh B.D., Singh A.K.	Development and evaluation of near-isogenic lines for major blast resistance gene(s) in Basmati rice.	Theor. Appl. Genet.			2015		
41693	25740115	Tsuji H., Tachibana C., Tamaki S., Taoka K., Kyozuka J., Shimamoto K.	Hd3a promotes lateral branching in rice.	Plant J.	82(2)	256-66	2015		
41694	25888593	Sun H., Tao J., Hou M., Huang S., Chen S., Liang Z., Xie T., Wei Y., Xie X., Yoneyama K., Xu G., Zhang Y.	A strigolactone signal is required for adventitious root formation in rice.	Ann. Bot.			2015		
41695	25849038	Sun T.J., Lu Y., Narusaka M., Shi C., Yang Y.B., Wu J.X., Zeng H.Y., Narusaka Y., Yao N.	A novel pyrimidin-like plant activator stimulates plant disease resistance and promotes growth.	PLoS ONE	10(4)	e0123227	2015		
41696	25845410	Lee J., Park J., Kim S., Park I., Seo Y.S.	Differential regulation of toxoflavin production and its role in the enhanced virulence of Burkholderia gladioli.	Mol. Plant Pathol.			2015		
41697	25855206	Ma X.L., Cui W.N., Zhao Q., Zhao J., Hou X.N., Li D.Y., Chen Z.L., Shen Y.Z., Huang Z.J.	Functional study of a salt-inducible TaSR gene in Triticum aestivum.	Physiol Plant			2015		
41698	25902895	Roy A., Sahoo D., Tripathy B.C.	Light-hormone interaction in the red-light-induced suppression of photomorphogenesis in rice seedlings.	Protoplasma			2015		
41699	25873666	Hazman M., Hause B., Eiche E., Nick P., Riemann M.	Increased tolerance to salt stress in OPDA-deficient rice ALLENE OXIDE CYCLASE mutants is linked to an increased ROS-scavenging activity.	J. Exp. Bot.			2015		
41700	25782973	Byeon Y., Lee H.Y., Back K.	Chloroplastic and cytoplasmic overexpression of sheep Serotonin N-acetyltransferase in transgenic rice plants is associated with low melatonin production despite high enzyme activity.	J. Pineal Res.	58(4)	461-9	2015		
41701	25954322	Roffler S., Wicker T.	Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons.	Mob DNA	6	8	2015		
41702	25893467	Luo J., Ahmed R., Kosar-Hashemi B., Larroque O., Butardo V.M., Tanner G.J., Colgrave M.L., Upadhyaya N.M., Tetlow I.J., Emes M.J., Millar A., Jobling S.A., Morell M.K., Li Z.	The different effects of starch synthase IIa mutations or variation on endosperm amylose content of barley, wheat and rice are determined by the distribution of starch synthase I and starch branching enzyme IIb between the starch granule and amyloplast stroma.	Theor. Appl. Genet.			2015		
41703	25932456	Xu H., Zhao Y., Qian G., Liu F.	XocR, a LuxR solo required for virulence in Xanthomonas oryzae pv. oryzicola.	Front Cell Infect Microbiol	5	37	2015		
41704	25907061	Lee K.E., Radhakrishnan R., Kang S.M., You Y.H., Joo G.J., Lee I.J., Ko J.H., Kim J.H.	Enterococcus faecium LKE12 Cell-Free-Extract Accelerates Host Plant Growth via Gibberellin and Indole-3-Acetic Acid Secretion.	J. Microbiol. Biotechnol.			2015		
41705	25856577	Wang M., Liu Y., Zhang C., Liu J., Liu X., Wang L., Wang W., Chen H., Wei C., Ye X., Li X., Tu J.	Gene Editing by Co-Transformation of TALEN and Chimeric RNA/DNA Oligonucleotides on the Rice OsEPSPS Gene and the Inheritance of Mutations.	PLoS ONE	10(4)	e0122755	2015		
41706	25849365	Cahn J.K., Brinkmann-Chen S., Spatzal T., Wiig J.A., Buller A.R., Einsle O., Hu Y., Ribbe M.W., Arnold F.H.	Cofactor specificity motifs and the induced fit mechanism in Class I ketol-acid reductoisomerases.	Biochem. J.			2015		
41707	25403809	Tang H., Liu G., Zhu J., Kobayashi K.	Effects of elevated ozone concentration on CH4 and N2O emission from paddy soil under fully open-air field conditions.	Glob Chang Biol	21(4)	1727-36	2015		
41708	25641067	Behera S., Wang N., Zhang C., Schmitz-Thom I., Strohkamp S., Sch?ltke S., Hashimoto K., Xiong L., Kudla J.	Analyses of Ca(2+) dynamics using a ubiquitin-10 promoter-driven Yellow Cameleon 3.6 indicator reveal reliable transgene expression and differences in cytoplasmic Ca(2+) responses in Arabidopsis and rice (Oryza sativa) roots.	New Phytol.	206(2)	751-60	2015		
41709	25867543	Zhang H., Gou F., Zhang J., Liu W., Li Q., Mao Y., Botella J.R., Zhu J.K.	TALEN-mediated targeted mutagenesis produces a large variety of heritable mutations in rice.	Plant Biotechnol. J.			2015		
41710	25917598	Suzuki Y., Miura K., Shigemune A., Sasahara H., Ohta H., Uehara Y., Ishikawa T., Hamada S., Shirasawa K.	Marker-assisted breeding of a LOX-3-null rice line with improved storability and resistance to preharvest sprouting.	Theor. Appl. Genet.			2015		
41711	25922485	Chen Y., Moore K.L., Miller A.J., McGrath S.P., Ma J.F., Zhao F.J.	The role of nodes in arsenic storage and distribution in rice.	J. Exp. Bot.			2015		
41712	25919452	Chen C., Song Y., Zhuang K., Li L., Xia Y., Shen Z.	Proteomic Analysis of Copper-Binding Proteins in Excess Copper-Stressed Roots of Two Rice (Oryza sativa L.) Varieties with Different Cu Tolerances.	PLoS ONE	10(4)	e0125367	2015		
41713	25865409	Golestan Hashemi FS., Rafii M.Y., Razi Ismail M., Mohamed M.T., Harun R.A., Latif M.A., Aslani F.	Opportunities of marker-assisted selection for rice fragrance through marker-trait association analysis of microsatellites and gene-based markers.	Plant Biol (Stuttg)			2015		
41714	25650041	Narsai R., Edwards J.M., Roberts T.H., Whelan J., Joss G.H., Atwell B.J.	Mechanisms of growth and patterns of gene expression in oxygen-deprived rice coleoptiles.	Plant J.	82(1)	25-40	2015		
41715	25923431	Tsukahara K., Sawada H., Kohno Y., Matsuura T., Mori I.C., Terao T., Ioki M., Tamaoki M.	Ozone-Induced Rice grain yield Loss Is Triggered via a Change in Panicle Morphology That Is Controlled by ABERRANT PANICLE ORGANIZATION 1 Gene.	PLoS ONE	10(4)	e0123308	2015		
41716	25920996	Huang C.K., Lo P.C., Huang L.F., Wu S.J., Yeh C.H., Lu C.A.	A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis.	Plant Mol. Biol.			2015		
41717	25923523	Wu Y., Fu Y., Zhao S., Gu P., Zhu Z., Sun C., Tan L.	CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice.	Plant Biotechnol. J.			2015	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
41718	25839331	Naveed M., Sohail Y., Khalid N., Ahmed I., Mumtaz A.S.	Evaluation of glucose dehydrogenase and pyrroloquinoline quinine (pqq) mutagenesis that renders functional inadequacies in host plants.	J. Microbiol. Biotechnol.			2015		
41719	25884499	Hayashi H., Ishikawa-Sakurai J., Murai-Hatano M., Ahamed A., Uemura M.	Aquaporins in developing rice grains.	Biosci. Biotechnol. Biochem.		1-8	2015		
41720	25863133	Rhee S., Chae H., Kim S.	PlantMirnaT: miRNA and mRNA integrated analysis fully utilizing characteristics of plant sequencing data.	Methods			2015		
41721	25838497	de Souza R., Sant'Anna FH., Ambrosini A., Tadra-Sfeir M., Faoro H., Pedrosa F.O., Souza E.M., Passaglia L.M.	Genome of Rhizobium sp. UR51a, Isolated from Rice Cropped in Southern Brazilian Fields.	Genome Announc	3(2)		2015		
41722	25895682	Ye C., Tenorio F.A., Argayoso M.A., Laza M.A., Koh H.J., Redo?a ED., Jagadish K.S., Gregorio G.B.	Identifying and confirming quantitative trait loci associated with heat tolerance at flowering stage in different rice populations.	BMC Genet.	16	41	2015		
41723	25904926	Gao D., Jiang N., Wing R.A., Jiang J., Jackson S.A.	Transposons play an important role in the evolution and diversification of centromeres among closely related species.	Front Plant Sci	6	216	2015		
41724	25926037	Tan Y., Xu X., Wang C., Cheng G., Li S., Liu X.	Molecular characterization and application of a novel cytoplasmic male sterility-associated mitochondrial sequence in rice.	BMC Genet.	16	45	2015		
41725	25862679	Mao D., Yu L., Chen D., Li L., Zhu Y., Xiao Y., Zhang D., Chen C.	Multiple cold resistance loci confer the high cold tolerance adaptation of Dongxiang wild rice (Oryza rufipogon) to its high-latitude habitat.	Theor. Appl. Genet.			2015		
41726	25923314	Xiong D., Liu X.I., Liu L., Douthe C., Li Y., Peng S., Huang J.	Rapid responses of mesophyll conductance to changes of CO2 concentration, temperature and irradiance are affected by N supplements in rice.	Plant Cell Environ.			2015		
41727	25907026	Jouet A., McMullan M., van Oosterhout C.	The effects of recombination, mutation and selection on the evolution of the Rp1 resistance genes in grasses.	Mol. Ecol.			2015		
41728	25906371	Schwessinger B., Bahar O., Thomas N., Holton N., Nekrasov V., Ruan D., Canlas P.E., Daudi A., Petzold C.J., Singan V.R., Kuo R., Chovatia M., Daum C., Heazlewood J.L., Zipfel C., Ronald P.C.	Correction: Transgenic Expression of the Dicotyledonous Pattern Recognition Receptor EFR in Rice Leads to Ligand-Dependent Activation of Defense Responses.	PLoS Pathog.	11(4)	e1004872	2015		
41729	25901158	Nazari F., Sulyok M., Kobarfard F., Yazdanpanah H., Krska R.	Evaluation of Emerging Fusarium mycotoxins beauvericin, Enniatins, Fusaproliferin and Moniliformin in Domestic Rice in Iran.	Iran J Pharm Res	14(2)	505-12	2015		
41730	25837042	Dong Y., Li Y., Zhao M., Jing M., Liu X., Liu M., Guo X., Zhang X., Chen Y., Liu Y., Liu Y., Ye W., Zhang H., Wang Y., Zheng X., Wang P., Zhang Z.	Global Genome and Transcriptome Analyses of Magnaporthe oryzae Epidemic Isolate 98-06 Uncover Novel Effectors and Pathogenicity-Related Genes, Revealing Gene Gain and Lose Dynamics in Genome Evolution.	PLoS Pathog.	11(4)	e1004801	2015		
41731	25857664	Bai C., Capell T., Berman J., Medina V., Sandmann G., Christou P., Zhu C.	Bottlenecks in carotenoid biosynthesis and accumulation in rice endosperm are influenced by the precursor-product balance.	Plant Biotechnol. J.			2015		
41732	25915023	Bao A., Liang Z., Zhao Z., Cai H.	Overexpressing of OsAMT1-3, a High Affinity Ammonium Transporter Gene, Modifies Rice Growth and Carbon-Nitrogen Metabolic Status.	Int J Mol Sci	16(5)	9037-63	2015		
41733	25859292	Lin D., Gong X., Jiang Q., Zheng K., Zhou H., Xu J., Teng S., Dong Y.	The rice ALS3 encoding a novel pentatricopeptide repeat protein is required for chloroplast development and seedling growth.	Rice (N Y)	8	17	2015		
41734	25865338	Mondal M.S., Saleh A.F., Razzaque Akanda MA., Biswas S.K., Md Moslehuddin AZ., Zaman S., Lazar A.N., Clarke D.	Simulating yield response of rice to salinity stress with the AquaCrop model.	Environ Sci Process Impacts			2015		
41735	25917172	Ma X., Zhang Q., Zhu Q., Liu W., Chen Y., Qiu R., Wang B., Yang Z., Li H., Lin Y., Xie Y., Shen R., Chen S., Wang Z., Chen Y., Guo J., Chen L., Zhao X., Dong Z., Liu Y.G.	A robust CRISPR/Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot plants.	Mol Plant			2015		
41736	25954282	Yamamoto N., Takano T., Tanaka K., Ishige T., Terashima S., Endo C., Kurusu T., Yajima S., Yano K., Tada Y.	Comprehensive analysis of transcriptome response to salinity stress in the halophytic turf grass Sporobolus virginicus.	Front Plant Sci	6	241	2015		
41737	25783167	Byeon Y., Lee H.Y., Hwang O.J., Lee H.J., Lee K., Back K.	Coordinated regulation of melatonin synthesis and degradation genes in rice leaves in response to cadmium treatment.	J. Pineal Res.	58(4)	470-8	2015		
41738	25846381	Wang F., Singh R., Genovesi A.D., Wai C.M., Huang X., Chandra A., Yu Q.	Sequence-tagged high-density genetic maps of Zoysia japonica provide insights into genome evolution in Chloridoideae.	Plant J.			2015		
41739	25843222	Tanweer F.A., Rafii M.Y., Sijam K., Rahim H.A., Ahmed F., Latif M.A.	Current advance methods for the identification of blast resistance genes in rice.	C. R. Biol.			2015		
41740	25902056	Singh S., Chand S., Singh N.K., Sharma T.R.	Genome-Wide Distribution, Organisation and Functional Characterization of disease resistance and Defence Response Genes across Rice Species.	PLoS ONE	10(4)	e0125964	2015		
41741	25875607	Liu Q., Wu X., Ma J., Chen B., Xin C.	Effects of Delaying Transplanting on Agronomic Traits and grain yield of Rice under Mechanical Transplantation Pattern.	PLoS ONE	10(4)	e0123330	2015		
41742	25896918	Zhang D., Kong W., Robertson J., Goff V.H., Epps E., Kerr A., Mills G., Cromwell J., Lugin Y., Phillips C., Paterson A.H.	Genetic analysis of inflorescence and plant height components in sorghum (Panicoidae) and comparative genetics with rice (Oryzoidae).	BMC Plant Biol.	15	107	2015		
41743	25910688	Farrow E.M., Wang J., Burken J.G., Shi H., Yan W., Yang J., Hua B., Deng B.	Reducing arsenic accumulation in rice grain through iron oxide amendment.	Ecotoxicol. Environ. Saf.	118	55-61	2015		
41744	25923345	Duitama J., Silva A., Sanabria Y., Cruz D.F., Quintero C., Ballen C., Lorieux M., Scheffler B., Farmer A., Torres E., Oard J., Tohme J.	Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection.	PLoS ONE	10(4)	e0124617	2015		
41745	25842038	Nasanit R., Krataithong K., Tantirungkij M., Limtong S.	Assessment of epiphytic yeast diversity in rice (Oryza sativa) phyllosphere in Thailand by a culture-independent approach.	Antonie Van Leeuwenhoek			2015		
41746	25842177	Shenton M.R., Ohyanagi H., Wang Z.X., Toyoda A., Fujiyama A., Nagata T., Feng Q., Han B., Kurata N.	Rapid turnover of antimicrobial-type cysteine-rich protein genes in closely related Oryza genomes.	Mol. Genet. Genomics			2015		
41747	25917758	Hu Y., Liang W., Yin C., Yang X., Ping B., Li A., Jia R., Chen M., Luo Z., Cai Q., Zhao X., Zhang D., Yuan Z.	Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.	Mol Plant			2015		
41748	25912474	Liang C., Zheng G., Li W., Wang Y., Hu B., Wang H., Wu H., Qian Y., Zhu X.G., Tan D.X., Chen S.Y., Chu C.	Melatonin Delays leaf senescence and Enhances Salt Stress Tolerance in Rice.	J. Pineal Res.			2015		
41749	25901895	Chan W.F., Li W.C., Wong M.H.	Uptake Kinetics of Arsenic in Upland Rice Cultivar Zhonghan 221 Inoculated with Arbuscular Mycorrhizal Fungi.	Int J Phytoremediation		0	2015		
41750	25931193	Fang Y., Lin H., Wu L., Ren D., Ye W., Dong G., Zhu L., Guo L.	Genome sequence of Xanthomonas sacchari R1, a biocontrol bacterium isolated from the rice seed.	J. Biotechnol.	206	77-78	2015		
41751	25758958	Kitaoka N., Wu Y., Xu M., Peters R.J.	Optimization of recombinant expression enables discovery of novel cytochrome P450 activity in rice diterpenoid biosynthesis.	Appl. Microbiol. Biotechnol.			2015		
41752	25867385	Moraes G.P., Benitez L.C., do Amaral MN., Vighi I.L., Auler P.A., da Maia LC., Bianchi V.J., Braga E.J.	Evaluation of reference genes for RT-qPCR studies in the leaves of rice seedlings under salt stress.	Genet. Mol. Res.	14(1)	2384-98	2015		
41753	25820664	Cingel A., Savi? J., Vinterhalter B., Vinterhalter D., Kosti? M., ?e?lija Jovanovi? D., Smigocki A., Ninkovi? S.	Growth and development of Colorado potato beetle larvae, Leptinotarsa decemlineata, on potato plants expressing the oryzacystatin II proteinase inhibitor.	Transgenic Res.			2015		
41754	25846878	Zhao L., Yan S., Huang R., Zhu S., Xiong H., Peng Z., Zhou Q., Huang Y., Shen X.	Characterization and fine mapping of a female fertility associated gene Ff1(t) in rice.	J. Genet.	94(1)	67-73	2015		
41755	25785447	Begum H., Spindel J.E., Lalusin A., Borromeo T., Gregorio G., Hernandez J., Virk P., Collard B., McCouch S.R.	Genome-wide association mapping for yield and other agronomic traits in an elite breeding population of tropical rice (Oryza sativa).	PLoS ONE	10(3)	e0119873	2015		
41756	25770588	Wang B., Li G., Zhang W.H.	Brassinosteroids are involved in Fe homeostasis in rice (Oryza sativa L.).	J. Exp. Bot.	66(9)	2749-61	2015		
41757	25867306	Wen Z.H., Zeng Y.X., Ji Z.J., Yang C.D.	Mapping quantitative trait loci for sheath blight disease resistance in Yangdao 4 rice.	Genet. Mol. Res.	14(1)	1636-49	2015		
41758	25857777	Godbole A., Dubey A.K., Mitra R., Reddy P.S., Mathew M.K.	Expression and Purification of OsVDAC4.	Meth. Enzymol.	556	51-75	2015		
41759	25821973	Schwessinger B., Bahar O., Thomas N., Holton N., Nekrasov V., Ruan D., Canlas P.E., Daudi A., Petzold C.J., Singan V.R., Kuo R., Chovatia M., Daum C., Heazlewood J.L., Zipfel C., Ronald P.C.	Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses.	PLoS Pathog.	11(3)	e1004809	2015		
41760	25617323	Kusuda H., Koga W., Kusano M., Oikawa A., Saito K., Hirai M.Y., Yoshida K.T.	Ectopic expression of myo-inositol 3-phosphate synthase induces a wide range of metabolic changes and confers salt tolerance in rice.	Plant Sci.	232	49-56	2015		
41761	25739079	Wang Y.P., Wei Z.Y., Zhang Y.Y., Lin C.J., Zhong X.F., Wang Y.L., Ma J.Y., Ma J., Xing S.C.	Chloroplast-expressed MSI-99 in tobacco improves disease resistance and displays inhibitory effect against rice blast fungus.	Int J Mol Sci	16(3)	4628-41	2015		
41762	25844120	Luo J., Jobling S.A., Millar A., Morell M.K., Li Z.	Allelic effects on starch structure and properties of six starch biosynthetic genes in a rice recombinant inbred line population.	Rice (N Y)	8	15	2015		
41763	25853032	Soh H.S., Chung H.Y., Lee H.H., Ajjappala H., Jang K., Park J.H., Sim J.S., Lee G.Y., Lee H.J., Han Y.H., Lim J.W., Choi I., Chung I.S., Hahn B.S.	Expression and functional validation of heat-labile enterotoxin B (LTB) and cholera toxin B (CTB) subunits in transgenic rice (Oryza sativa).	Springerplus	4	148	2015		
41764	25819088	Kameoka H., Kyozuka J.	Downregulation of Rice DWARF 14 LIKE Suppress Mesocotyl Elongation via a Strigolactone Independent Pathway in the Dark.	J Genet Genomics	42(3)	119-24	2015		
41765	25844121	Kitomi Y., Kanno N., Kawai S., Mizubayashi T., Fukuoka S., Uga Y.	QTLs underlying natural variation of root growth angle among rice cultivars with the same functional allele of DEEPER ROOTING 1.	Rice (N Y)	8	16	2015		
41766	25870602	Hoang T.M., Moghaddam L., Williams B., Khanna H., Dale J., Mundree S.G.	Development of salinity tolerance in rice by constitutive-overexpression of genes involved in the regulation of programmed cell death.	Front Plant Sci	6	175	2015		
41767	25793471	Xu J., Lan H., Fang H., Huang X., Zhang H., Huang J.	Quantitative Proteomic Analysis of the Rice (Oryza sativa L.) Salt Response.	PLoS ONE	10(3)	e0120978	2015		
41768	25761674	Zhou Y., Xia X., Yu G., Wang J., Wu J., Wang M., Yang Y., Shi K., Yu Y., Chen Z., Gan J., Yu J.	Brassinosteroids play a critical role in the regulation of pesticide metabolism in crop plants.	Sci Rep	5	9018	2015		
41769	25809845	L? Y., Cui X., Li R., Huang P., Zong J., Yao D., Li G., Zhang D., Yuan Z.	Development of genome-wide insertion/deletion markers in rice based on graphic pipeline platform.	J Integr Plant Biol			2015		
41770	25780769	N??ez-L?pez L., Aguirre-Cruz A., Barrera-Figueroa BE., Pe?a-Castro JM.	Improvement of enzymatic saccharification yield in Arabidopsis thaliana by ectopic expression of the rice SUB1A-1 transcription factor.	PeerJ	3	e817	2015		
41771	25786239	Li W., Wang F., Wang J., Fan F., Zhu J., Yang J., Liu F., Zhong W.	Overexpressing CYP71Z2 enhances resistance to bacterial blight by suppressing auxin biosynthesis in rice.	PLoS ONE	10(3)	e0119867	2015		
41772	25784715	Sun H., Li J., Song W., Tao J., Huang S., Chen S., Hou M., Xu G., Zhang Y.	Nitric oxide generated by nitrate reductase increases nitrogen uptake capacity by inducing lateral root formation and inorganic nitrogen uptake under partial nitrate nutrition in rice.	J. Exp. Bot.	66(9)	2449-59	2015		
41773	25790260	Sun W., Zhou Q., Yao Y., Qiu X., Xie K., Yu S.	Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in rice.	PLoS ONE	10(3)	e0122013	2015		
41774	25588693	Chakraborty A., Bhattacharjee S.	Differential competence of redox-regulatory mechanism under extremes of temperature determines growth performances and cross tolerance in two indica rice cultivars.	J. Plant Physiol.	176	65-77	2015		
41775	25834216	Zhang D., Li J., Compton R.O., Robertson J., Goff V.H., Epps E., Kong W., Kim C., Paterson A.H.	Comparative Genetics of seed size Traits in Divergent Cereal Lineages Represented by Sorghum (Panicoidae) and Rice (Oryzoidae).	G3 (Bethesda)			2015		
41776	25813048	Lee T., Oh T., Yang S., Shin J., Hwang S., Kim C.Y., Kim H., Shim H., Shim J.E., Ronald P.C., Lee I.	RiceNet v2: an improved network prioritization server for rice genes.	Nucleic Acids Res.			2015		
41777	25460871	Qian B., Li X., Liu X., Chen P., Ren C., Dai C.	Enhanced drought tolerance in transgenic rice over-expressing of maize C4 phosphoenolpyruvate carboxylase gene via NO and Ca(2+).	J. Plant Physiol.	175	9-20	2015		
41778	25822994	Luo Q., Li Y., Wang W., Fei X., Deng X.	Genome-Wide Survey and Expression Analysis of Chlamydomonas reinhardtii U-box E3 Ubiquitin Ligases (CrPUBs) Reveal a Functional Lipid Metabolism Module.	PLoS ONE	10(3)	e0122600	2015		
41779	25739330	Fan X., Wu J., Chen T., Tie W., Chen H., Zhou F., Lin Y.	Loss-of-function mutation of rice SLAC7 decreases chloroplast stability and induces a photoprotection mechanism in rice.	J Integr Plant Biol			2015	SLAC7	OsSLAC7
41780	25765580	Liu Y.K., Li Y.T., Lu C.F., Huang L.F.	Enhancement of recombinant human serum albumin in transgenic rice cell culture system by cultivation strategy.	N Biotechnol	32(3)	328-34	2015		
41781	25744417	N??ez de C?ceres Gonz?lez FF., Davey M.R., Cancho Sanchez E., Wilson Z.A.	Conferred resistance to Botrytis cinerea in Lilium by overexpression of the RCH10 chitinase gene.	Plant Cell Rep.			2015		
41782	25790283	Cho Y.I., Ahn Y.K., Tripathi S., Kim J.H., Lee H.E., Kim D.S.	Comparative Analysis of Disease-Linked Single Nucleotide Polymorphic Markers from Brassica rapa for Their Applicability to Brassica oleracea.	PLoS ONE	10(3)	e0120163	2015		
41783	25828885	Li H., Guan R., Guo H., Miao X.	New insights into an RNAi approach for plant defense against piercing-sucking and stem-borer insect pests.	Plant Cell Environ.			2015		
41784	25725011	S?nchez-Vallet A., Mesters J.R., Thomma B.P.	The battle for chitin recognition in plant-microbe interactions.	FEMS Microbiol. Rev.	39(2)	171-83	2015		
41785	25790128	Pan Y., Zhang H., Zhang D., Li J., Xiong H., Yu J., Li J., Rashid M.A., Li G., Ma X., Cao G., Han L., Li Z.	Genetic analysis of cold tolerance at the germination and booting stages in rice by association mapping.	PLoS ONE	10(3)	e0120590	2015		
41786	25762131	Takemoto-Kuno Y., Mitsueda H., Suzuki K., Hirabayashi H., Ideta O., Aoki N., Umemoto T., Ishii T., Ando I., Kato H., Nemoto H., Imbe T., Takeuchi Y.	qAC2, a novel QTL that interacts with Wx and controls the low amylose content in rice (Oryza sativa L.).	Theor. Appl. Genet.	128(4)	563-73	2015		
41787	25830863	Nath M., Garg B., Sahoo R.K., Tuteja N.	PDH45 overexpressing transgenic tobacco and rice plants provide salinity stress tolerance via less sodium accumulation.	Plant Signal Behav	10(3)	e992289	2015		
41788	25732383	Matsuno K., Fujimura T.	Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?	Mol. Genet. Genomics			2015		
41789	25828772	Li X., Lawas L.M., Malo R., Glaubitz U., Erban A., Mauleon R., Heuer S., Zuther E., Kopka J., Hincha D.K., Jagadish K.S.	Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.	Plant Cell Environ.			2015		
41790	25780993	Wei L.X., Lv B.S., Wang M.M., Ma H.Y., Yang H.Y., Liu X.L., Jiang C.J., Liang Z.W.	Priming effect of abscisic acid on alkaline stress tolerance in rice (Oryza sativa L.) seedlings.	Plant Physiol. Biochem.	90	50-7	2015		
41791	25754232	Chakraborty A., Mitra J., Bhattacharyya J., Pradhan S., Sikdar N., Das S., Chakraborty S., Kumar S., Lakhanpaul S., Sen S.K.	Transgenic expression of an unedited mitochondrial orfB gene product from wild abortive (WA) cytoplasm of rice (Oryza sativa L.) generates male sterility in fertile rice lines.	Planta	241(6)	1463-79	2015		
41792	25817414	Sekhar S., Panda B.B., Mohapatra T., Das K., Shaw B.P., Kariali E., Mohapatra P.K.	Spikelet-specific variation in ethylene production and constitutive expression of ethylene receptors and signal transducers during grain filling of compact- and lax-panicle rice (Oryza sativa) cultivars.	J. Plant Physiol.	179	21-34	2015		
41793	25815721	Xu F., Sun X., Chen Y., Huang Y., Tong C., Bao J.	Rapid Identification of Major QTLs Associated with Rice grain weight and Their Utilization.	PLoS ONE	10(3)	e0122206	2015		
41794	25809150	Kansal S., Devi R.M., Balyan S.C., Arora M.K., Singh A.K., Mathur S., Raghuvanshi S.	Unique miRNome during anthesis in drought-tolerant indica rice var. Nagina 22.	Planta	241(6)	1543-59	2015		
41795	25886904	Guo Z., Song G., Liu Z., Qu X., Chen R., Jiang D., Sun Y., Liu C., Zhu Y., Yang D.	Global epigenomic analysis indicates that epialleles contribute to Allele-specific expression via Allele-specific histone modifications in hybrid rice.	BMC Genomics	16	232	2015		
41796	25846877	Xie D.W., Wang X.N., Fu L.S., Sun J., Zheng W., Li Z.F.	Identification of the trehalose-6-phosphate synthase gene family in winter wheat and expression analysis under conditions of freezing stress.	J. Genet.	94(1)	55-65	2015		
41797	25821195	Zhang L., Wang J., Wang J., Wang L., Ma B., Zeng L., Qi Y., Li Q., He Z.	Quantitative trait locus analysis and fine mapping of the qPL6 locus for panicle length in rice.	Theor. Appl. Genet.			2015		
41798	25791479	Li L., Deng D., Chen X., Wu B., Hu K., Qiu T., Cui S., Huang F.	Expression of the moss PpLEA4-20 gene in rice enhances membrane protection and client proteins stability.	Biochem. Biophys. Res. Commun.	460(2)	386-91	2015		
41799	25809149	Bang S.W., Park S.H., Kim Y.S., Do Choi Y., Kim J.K.	The activities of four constitutively expressed promoters in single-copy transgenic rice plants for two homozygous generations.	Planta	241(6)	1529-41	2015		
41800	25754973	Zhu X., Liang W., Cui X., Chen M., Yin C., Luo Z., Zhu J., Lucas W.J., Wang Z., Zhang D.	Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.	Plant J.			2015		
41801	25815594	Marzec M., Muszynska A.	In Silico Analysis of the Genes Encoding Proteins that Are Involved in the Biosynthesis of the RMS/MAX/D Pathway Revealed New Roles of Strigolactones in Plants.	Int J Mol Sci	16(4)	6757-82	2015		
41802	25728912	Byeon Y., Back K.	Molecular cloning of melatonin 2-hydroxylase responsible for 2-hydroxymelatonin production in rice (Oryza sativa).	J. Pineal Res.	58(3)	343-51	2015	_,RL14,2ODD9,2ODD13,2ODD10,2ODD7,2ODD12,2ODD20,GA2OX9,2ODD25,2ODD22,2ODD23,2ODD26,2ODD28,2ODD18,2ODD30,2ODD27,2ODD16,2ODD29,2ODD3,2ODD33,2ODD34,2ODD19,GA2OX11,GA20OX7,_,_,_,2ODD5,_,2ODD6,ACO5,2ODD11,GA2OX5,_	OsSTA135, STA135, OsODD21, ODD21, 2-ODD21, Os2-ODD21, Os2ODD21,2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24,2-ODD9, Os2-ODD9, Os2ODD9,2-ODD13, Os2-ODD13, Os2ODD13,2-ODD10, Os2-ODD10, Os2ODD10,2-ODD7, Os2-ODD7, Os2ODD7,2-ODD12, Os2-ODD12, Os2ODD12,2-ODD20, Os2-ODD20, Os2ODD20,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,2-ODD25, Os2-ODD25, Os2ODD25,2-ODD22, Os2-ODD22, Os2ODD22,2-ODD23, Os2-ODD23, Os2ODD23,2-ODD26, Os2-ODD26, Os2ODD26,2-ODD28, Os2-ODD28, Os2ODD28,2-ODD18, Os2-ODD18, Os2ODD18,2-ODD30, Os2-ODD30, Os2ODD30,2-ODD27, Os2-ODD27, Os2ODD27,2-ODD16, Os2-ODD16, Os2ODD16,2-ODD29, Os2-ODD29, Os2ODD29,2-ODD3, Os2-ODD3, Os2ODD3,2-ODD33, Os2-ODD33, Os2ODD33,2-ODD34, Os2-ODD34, Os2ODD34,OsODD19, ODD19, 2-ODD19, Os2-ODD19, Os2ODD19,OsGA2ox11, 2-ODD31, Os2-ODD31, 2ODD31, Os2ODD31,OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4,FLS, 2-ODD15, Os2-ODD15, 2ODD15, Os2ODD15,FLS, 2-ODD17, Os2-ODD17, 2ODD17, Os2ODD17,OsS3H, S3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1,2-ODD5, Os2-ODD5, Os2ODD5,FLS, 2-ODD2, Os2-ODD2, 2ODD2, Os2ODD2, OsF3H, F3H,2-ODD6, Os2-ODD6, Os2ODD6,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11,OsGA2ox5, 2-ODD32, Os2-ODD32, 2ODD32, Os2ODD32,2-ODD8, Os2-ODD8, 2ODD8, Os2ODD8
41803	25732533	G?mez-Ariza J., Galbiati F., Goretti D., Brambilla V., Shrestha R., Pappolla A., Courtois B., Fornara F.	Loss of floral repressor function adapts rice to higher latitudes in Europe.	J. Exp. Bot.	66(7)	2027-39	2015		
41804	25824104	Zhou J., Peng Z., Long J., Sosso D., Liu B., Eom J.S., Huang S., Liu S., Cruz C.V., Frommer W.B., White F.F., Yang B.	Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice.	Plant J.			2015		
41805	25867379	Liu H.H., Wang Y.G., Wang S.P., Li H.J.	Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.	Genet. Mol. Res.	14(1)	2331-40	2015		
41806	25768901	Manishankar P., Kudla J.	cold tolerance encoded in one SNP.	Cell	160(6)	1045-6	2015		
41807	25774106	Singh A.K., Singh P.K., Arya M., Singh N.K., Singh U.S.	Molecular Screening of Blast Resistance Genes in Rice using SSR Markers.	Plant Pathol. J.	31(1)	12-24	2015		
41808	25822501	Bu S.H., Xinwang Z., Yi C., Wen J., Jinxing T., Zhang Y.M.	Interacted QTL Mapping in Partial NCII Design Provides Evidences for Breeding by Design.	PLoS ONE	10(3)	e0121034	2015		
41809	25913114	Han X., Wan C., Li X., Li H., Yang D., Du S., Xiao Y., Qin Z.	Synthesis and bioactivity of 2',3'-benzoabscisic acid analogs.	Bioorg. Med. Chem. Lett.			2015		
41810	25818072	Lima J.M., Nath M., Dokku P., Raman K.V., Kulkarni K.P., Vishwakarma C., Sahoo S.P., Mohapatra U.B., Amitha Mithra SV., Chinnusamy V., Robin S., Sarla N., Seshashayee M., Singh K., Singh A.K., Singh N.K., Sharma R.P., Mohapatra T.	Physiological, anatomical and transcriptional alterations in a rice mutant leading to enhanced water stress tolerance.	AoB Plants			2015		
41811	25879964	Cho J., Jung T., Kim J., Song S., Ko J., Woo K., Lee J., Choe M., Oh I.	Development of a Waxy gene real-time PCR assay for the quantification of sorghum Waxy grain in mixed cereal products.	BMC Biotechnol.	15(1)	20	2015		
41812	25897471	Mostofa M.G., Seraj Z.I., Fujita M.	Interactive effects of nitric oxide and glutathione in mitigating copper toxicity of rice (Oryza sativa L.) seedlings.	Plant Signal Behav	10(3)	e991570	2015		
41813	25789629	Liu E., Liu X., Zeng S., Zhao K., Zhu C., Liu Y., Breria M.C., Zhang B., Hong D.	Time-course association mapping of the grain-filling rate in rice (Oryza sativa L.).	PLoS ONE	10(3)	e0119959	2015		
41814	25807168	Bimolata W., Kumar A., M SK., Sundaram R.M., Laha G.S., Qureshi I.A., Ghazi I.A.	Nucleotide diversity analysis of three major bacterial blight resistance genes in rice.	PLoS ONE	10(3)	e0120186	2015		
41815	25747843	Wang Q., Xie W., Xing H., Yan J., Meng X., Li X., Fu X., Xu J., Lian X., Yu S., Xing Y., Wang G.	Genetic Architecture of Natural Variation in Rice chlorophyll content Revealed by a Genome-Wide Association Study.	Mol Plant			2015		
41816	25690040	Sun L., Huang L., Hong Y., Zhang H., Song F., Li D.	Comprehensive analysis suggests overlapping expression of rice ONAC transcription factors in abiotic and biotic stress responses.	Int J Mol Sci	16(2)	4306-26	2015		
41817	25697955	Dhadi S.R., Xu Z., Shaik R., Driscoll K., Ramakrishna W.	Differential regulation of genes by retrotransposons in rice promoters.	Plant Mol. Biol.	87(6)	603-13	2015		
41818	25732386	Hamdani S., Qu M., Xin C.P., Li M., Chu C., Govindjee, Zhu X.G.	Variations between the photosynthetic properties of elite and landrace Chinese rice cultivars revealed by simultaneous measurements of 820nm transmission signal and chlorophyll a fluorescence induction.	J. Plant Physiol.	177	128-38	2015		
41819	25755661	Behringer C., Schwechheimer C.	B-GATA transcription factors - insights into their structure, regulation, and role in plant development.	Front Plant Sci	6	90	2015	GATA10,GATA16,GATA13,GATA12,GATA9,GATA8,NL1,_,CGA1	OsGATA10,OsGATA16, OsGNC, GNC,OsGATA13,OsGATA12,OsGATA9,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b,nl1, OsGATA15, GATA15,OsGATA8, GATA8, OsGATA14, GATA14,Cga1, OsCga1, OsCGA1, OsGATA11, GATA11
41820	25888265	Mohanta T.K., Arora P.K., Mohanta N., Parida P., Bae H.	Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants.	BMC Genomics	16	58	2015		
41821	25815311	Cui J., Zhang Z., Shao Y., Zhang K., Leng P., Liang Z.	Genome-wide identification, evolutionary, and expression analyses of histone h3 variants in plants.	Biomed Res Int	2015	341598	2015		
41822	25644581	Zeng X., Tian D., Gu K., Zhou Z., Yang X., Luo Y., White F.F., Yin Z.	Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae.	Plant Biotechnol. J.			2015		
41823	25844116	Jiang J., Mou T., Yu H., Zhou F.	Molecular breeding of thermo-sensitive genic male sterile (TGMS) lines of rice for blast resistance using Pi2 gene.	Rice (N Y)	8	11	2015		
41824	25713176	Umehara M., Cao M., Akiyama K., Akatsu T., Seto Y., Hanada A., Li W., Takeda-Kamiya N., Morimoto Y., Yamaguchi S.	Structural Requirements of Strigolactones for shoot branching Inhibition in Rice and Arabidopsis.	Plant Cell Physiol.			2015		
41825	25663113	Mukherjee K., Pandey D.M., Vidyarthi A.S.	In silico characterization and analysis of RTBP1 and NgTRF1 protein through MD simulation and molecular docking - A comparative study.	Interdiscip Sci			2015		
41826	25887533	Hu J., Chen X., Zhang H., Ding Y.	Genome-wide analysis of DNA methylation in photoperiod- and thermo-sensitive male sterile rice Peiai 64S.	BMC Genomics	16	102	2015		
41827	25658451	Liu J., Park C.H., He F., Nagano M., Wang M., Bellizzi M., Zhang K., Zeng X., Liu W., Ning Y., Kawano Y., Wang G.L.	The RhoGAP Spin6 associates with SPL11 and OsRac1 and negatively regulates programmed cell death and innate immunity in rice.	PLoS Pathog.	11(2)	e1004629	2015	_,_,SPL11,_,_,RAC1,_	SPIN6, Spin6, SIP11 ,OsSgt1, SGT1, OsSGT1, Os SGT1,spl11, spl11*, OsPUB11, PUB11,RAR1, Os RAR1, OsRAR1,Spin6.3,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,Spin6.2
41828	25648443	Kumar A., Bimolata W., Kannan M., Kirti P.B., Qureshi I.A., Ghazi I.A.	Comparative proteomics reveals differential induction of both biotic and abiotic stress response associated proteins in rice during Xanthomonas oryzae pv. oryzae infection.	Funct. Integr. Genomics			2015		
41829	25735982	Phung T.H., Jung S.	Differential antioxidant defense and detoxification mechanisms in photodynamically stressed rice plants treated with the deregulators of porphyrin biosynthesis, 5-aminolevulinic acid and oxyfluorfen.	Biochem. Biophys. Res. Commun.	459(2)	346-51	2015		
41830	25658704	Jiang D., Fang J., Lou L., Zhao J., Yuan S., Yin L., Sun W., Peng L., Guo B., Li X.	Characterization of a null allelic mutant of the rice nal1 gene reveals its role in regulating cell division.	PLoS ONE	10(2)	e0118169	2015		
41831	25804816	Paul S., Gayen D., Datta S.K., Datta K.	Dissecting root proteome of transgenic rice cultivars unravels metabolic alterations and accumulation of novel stress responsive proteins under drought stress.	Plant Sci.	234	133-43	2015		
41832	25728666	Ma Y., Dai X., Xu Y., Luo W., Zheng X., Zeng D., Pan Y., Lin X., Liu H., Zhang D., Xiao J., Guo X., Xu S., Niu Y., Jin J., Zhang H., Xu X., Li L., Wang W., Qian Q., Ge S., Chong K.	COLD1 confers chilling tolerance in rice.	Cell	160(6)	1209-21	2015	COLD3,COLD1,COLD2,COLD4,COLD5,D1	,,,,,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
41833	25730062	Li J.B., Sun Y.D., Liu H., Wang Y.Y., Jia Y.L., Xu M.H.	Natural variation of rice blast resistance gene Pi-d2.	Genet. Mol. Res.	14(1)	1235-49	2015		
41834	25659573	Wu J., Kou Y., Bao J., Li Y., Tang M., Zhu X., Ponaya A., Xiao G., Li J., Li C., Song M.Y., Cumagun C.J., Deng Q., Lu G., Jeon J.S., Naqvi N.I., Zhou B.	Comparative genomics identifies the Magnaporthe oryzae avirulence effector AvrPi9 that triggers Pi9-mediated blast resistance in rice.	New Phytol.	206(4)	1463-75	2015		
41835	25674802	Han Y., Wang R., Yang Z., Zhan Y., Ma Y., Ping S., Zhang L., Lin M., Yan Y.	1-aminocyclopropane-1-carboxylate deaminase from Pseudomonas stutzeri A1501 facilitates the growth of rice in the presence of salt or heavy metals.	J. Microbiol. Biotechnol.			2015		
41836	25657119	Ruan W., Guo M., Cai L., Hu H., Li C., Liu Y., Wu Z., Mao C., Yi K., Wu P., Mo X.	Genetic manipulation of a high-affinity PHR1 target cis-element to improve phosphorous uptake in Oryza sativa L.	Plant Mol. Biol.	87(4-5)	429-40	2015		
41837	25752430	Ge L.Q., Sun Y.C., Ouyang F., Wu J.C., Ge F.	The effects of triazophos applied to transgenic Bt rice on the nutritional indexes, Nlvg expression, and population growth of Nilaparvata lugens St?l under elevated CO?.	Pestic Biochem Physiol	118	50-7	2015		
41838	25638043	Charfeddine S., Sa?di MN., Charfeddine M., Gargouri-Bouzid R.	Genome-wide identification and expression profiling of the late embryogenesis abundant genes in potato with emphasis on dehydrins.	Mol. Biol. Rep.			2015		
41839	25651892	Xie S., Wu H., Chen L., Zang H., Xie Y., Gao X.	Transcriptome profiling of Bacillus subtilis OKB105 in response to rice seedlings.	BMC Microbiol.	15(1)	21	2015		
41840	25719552	Zhang Y.K., Zhu D.F., Zhang Y.P., Chen H.Z., Xiang J., Lin X.Q.	Low pH-induced changes of antioxidant enzyme and ATPase activities in the roots of rice (Oryza sativa L.) seedlings.	PLoS ONE	10(2)	e0116971	2015		
41841	25647350	Yan D., Zhang X., Zhang L., Ye S., Zeng L., Liu J., Li Q., He Z.	CURVED CHIMERIC PALEA 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.	Plant J.	82(1)	12-24	2015	MADS58,_,_,D61,_	OsMADS58,OsWD40-79, OsMSI1, WD40-79, MSI1,,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,DFO1, EMF1, OsDFO1, OsEMF1, CCP1, OsCCP1
41842	25647327	Yan J., Guan L., Sun Y., Zhu Y., Liu L., Lu R., Jiang M., Tan M., Zhang A.	Calcium and ZmCCaMK are involved in brassinosteroid-induced antioxidant defense in maize leaves.	Plant Cell Physiol.	56(5)	883-96	2015		
41843	25667114	Kamau P.K., Sano S., Takami T., Matsushima R., Maekawa M., Sakamoto W.	A Mutation in GIANT CHLOROPLAST Encoding a PARC6 Homolog Affects Spikelet Fertility in Rice.	Plant Cell Physiol.	56(5)	977-91	2015		
41844	25844113	Uga Y., Kitomi Y., Yamamoto E., Kanno N., Kawai S., Mizubayashi T., Fukuoka S.	A QTL for root growth angle on rice chromosome 7 is involved in the genetic pathway of DEEPER ROOTING 1.	Rice (N Y)	8	8	2015		
41845	25650179	Xia C.F., Lv L., Chen X.Y., Fu B.Q., Lei K.L., Qin C.Q., Liu Y.	Nd(III)-Induced Rice Mitochondrial Dysfunction Investigated by Spectroscopic and Microscopic Methods.	J. Membr. Biol.	248(2)	319-26	2015		
41846	25690516	Khaliq A., Aslam F., Matloob A., Hussain S., Geng M., Wahid A., Ur Rehman H.	Seed Priming with Selenium: Consequences for Emergence, Seedling Growth, and Biochemical Attributes of Rice.	Biol Trace Elem Res			2015		
41847	25850033	Andolfo G., Ruocco M., Di Donato A., Frusciante L., Lorito M., Scala F., Ercolano M.R.	Genetic variability and evolutionary diversification of membrane ABC transporters in plants.	BMC Plant Biol.	15	51	2015		
41848	25684654	Chen R., Shen L.P., Wang D.H., Wang F.G., Zeng H.Y., Chen Z.S., Peng Y.B., Lin Y.N., Tang X., Deng M.H., Yao N., Luo J.C., Xu Z.H., Bai S.N.	A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.	Mol Plant			2015		
41849	25717036	Morita R., Sugino M., Hatanaka T., Misoo S., Fukayama H.	CO2-Responsive CONSTANS, CONSTANS-Like, and Time of Chlorophyll a/b Binding Protein Expression1 Protein Is a Positive Regulator of Starch Synthesis in Vegetative Organs of Rice.	Plant Physiol.	167(4)	1321-31	2015	AGPS1,_,AGPL3,SSI,PUL,SBE1,GBSSII,_,SBE4,GPT2	OsAGPS1, APS1, OsAPS1, AGPsma,OsNRR, NRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, Os CRCT,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1,OsSSI, SSS 1, SSS1, SS1,OsPUL, SDBE, OsPUL3, RE,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,GBSS2,Pho1, OsPho1, OsPHOL, PHOL,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsGPT2
41850	25682587	Sarkar A., Singh A.A., Agrawal S.B., Ahmad A., Rai S.P.	Cultivar specific variations in antioxidative defense system, genome and proteome of two tropical rice cultivars against ambient and elevated ozone.	Ecotoxicol. Environ. Saf.	115	101-11	2015		
41851	25888360	Jin T., Chen J., Zhu L., Zhao Y., Guo J., Huang Y.	Comparative mapping combined with homology-based cloning of the rice genome reveals candidate genes for grain zinc and iron concentration in maize.	BMC Genet.	16	17	2015		
41852	25730074	Kwon S.J., Yu J., Park Y.J., Son J.H., Kim N.S., Lee J.K.	Genetic analysis of seed-shattering genes in rice using an F3:4 population derived from an Oryza sativa x Oryza rufipogon cross.	Genet. Mol. Res.	14(1)	1347-61	2015		
41853	25844112	Ruengphayak S., Chaichumpoo E., Phromphan S., Kamolsukyunyong W., Sukhaket W., Phuvanartnarubal E., Korinsak S., Korinsak S., Vanavichit A.	Pseudo-backcrossing design for rapidly pyramiding multiple traits into a preferential rice variety.	Rice (N Y)	8	7	2015		
41854	25687128	Sasaki K., Takeuchi Y., Miura K., Yamaguchi T., Ando T., Ebitani T., Higashitani A., Yamaya T., Yano M., Sato T.	Fine mapping of a major quantitative trait locus, qLG-9, that controls seed longevity in rice (Oryza sativa L.).	Theor. Appl. Genet.	128(4)	769-78	2015		
41855	25650828	Ma J., Lei C., Xu X., Hao K., Wang J., Cheng Z., Ma X., Ma J., Zhou K., Zhang X., Guo X., Wu F., Lin Q., Wang C., Zhai H., Wang H., Wan J.	Pi64, encoding a novel CC-NBS-LRR protein, confers resistance to leaf and neck blast in rice.	Mol. Plant Microbe Interact.			2015	PI64	Pi64
41856	25680791	Henry A., Swamy B.P., Dixit S., Torres R.D., Batoto T.C., Manalili M., Anantha M.S., Mandal N.P., Kumar A.	Physiological mechanisms contributing to the QTL-combination effects on improved performance of IR64 rice NILs under drought.	J. Exp. Bot.	66(7)	1787-99	2015		
41857	25755666	Pourabed E., Jazayeri Noushabadi MR., Jamali S.H., Moheb Alipour N., Zareyan A., Sadeghi L.	Identification and DUS Testing of Rice Varieties through Microsatellite Markers.	Int J Plant Genomics	2015	965073	2015		
41858	25658309	Wu Z., Tembrock L.R., Ge S.	Are differences in genomic data sets due to true biological variants or errors in genome assembly: an example from two chloroplast genomes.	PLoS ONE	10(2)	e0118019	2015		
41859	25849155	Tripathi A.K., Singh K., Pareek A., Singla-Pareek SL.	Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation.	BMC Plant Biol.	15	42	2015		
41860	25727092	Liang X., Yu X., Dong W., Guo S., Xu S., Wang J., Zhou M.	Two thiadiazole compounds promote rice defence against Xanthomonas oryzae pv. oryzae by suppressing the bacterium's production of extracellular polysaccharides.	Mol. Plant Pathol.			2015		
41861	25644466	Lu H.P., Edwards M., Wang Q.Z., Zhao H.J., Fu H.W., Huang J.Z., Gatehouse A., Shu Q.Y.	Expression of cytochrome P450 CYP81A6 in rice: tissue specificity, protein subcellular localization, and response to herbicide application.	J Zhejiang Univ Sci B	16(2)	113-22	2015		
41862	25730034	Zhao L., Liu H.J., Zhang C.X., Wang Q.Y., Li X.H.	Meta-analysis of constitutive QTLs for disease resistance in maize and its synteny conservation in the rice genome.	Genet. Mol. Res.	14(1)	961-70	2015		
41863	25688565	Wu J., Yang Z., Wang Y., Zheng L., Ye R., Ji Y., Zhao S., Ji S., Liu R., Xu L., Zheng H., Zhou Y., Zhang X., Cao X., Xie L., Wu Z., Qi Y., Li Y.	Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA.	Elife	4		2015	AGO1B,AGO1C,AGO1D,AGO18,AGO1A	OsAGO1b, AGO1b, AGO1-2 ,OsAGO1c, OsAGO1, AGO1, AGO1c,OsAGO1d, AGO1d,OsAGO18,OsAGO1a, AGO1a, AGO10, AGO1-1 
41864	25699072	Hussain A., Shah S.T., Rahman H., Irshad M., Iqbal A.	Effect of IAA on in vitro growth and colonization of Nostoc in plant roots.	Front Plant Sci	6	46	2015		
41865	25725409	Wang Z.M., Li H.X., Liu X.F., He Y., Zeng H.L.	Reduction of pyruvate orthophosphate dikinase activity is associated with high temperature-induced chalkiness in rice grains.	Plant Physiol. Biochem.	89	76-84	2015		
41866	25688911	Li S., Wang Y., Wang S., Fang A., Wang J., Liu L., Zhang K., Mao Y., Sun W.	The Type III Effector AvrBs2 in Xanthomonas oryzae pv. oryzicola Suppresses Rice Immunity and Promotes Disease Development Running title: AvrBs2 in Xoc suppresses rice immunity.	Mol. Plant Microbe Interact.			2015		
41867	25849162	Wang J., Qu B., Dou S., Li L., Yin D., Pang Z., Zhou Z., Tian M., Liu G., Xie Q., Tang D., Chen X., Zhu L.	The E3 ligase OsPUB15 interacts with the receptor-like kinase PID2 and regulates plant cell death and innate immunity.	BMC Plant Biol.	15	49	2015		
41868	25844117	Yan H., Ma L., Wang Z., Lin Z., Su J., Lu B.R.	Multiple tissue-specific expression of rice seed-shattering gene SH4 regulated by its promoter pSH4.	Rice (N Y)	8	12	2015		
41869	25804805	Ding L., Gao C., Li Y., Li Y., Zhu Y., Xu G., Shen Q., Kaldenhoff R., Kai L., Guo S.	The enhanced drought tolerance of rice plants under ammonium is related to aquaporin (AQP).	Plant Sci.	234	14-21	2015		
41870	25673476	Sakurai G., Satake A., Yamaji N., Mitani-Ueno N., Yokozawa M., Feugier F.G., Ma J.F.	In silico simulation modeling reveals the importance of the casparian strip for efficient silicon uptake in rice roots.	Plant Cell Physiol.	56(4)	631-9	2015		
41871	25844118	Finatto T., de Oliveira AC., Chaparro C., da Maia LC., Farias D.R., Woyann L.G., Mistura C.C., Soares-Bresolin AP., Llauro C., Panaud O., Picault N.	Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice.	Rice (N Y)	8	13	2015		
41872	25462966	Okishio T., Sasayama D., Hirano T., Akimoto M., Itoh K., Azuma T.	Ethylene is not involved in adaptive responses to flooding in the Amazonian wild rice species Oryza grandiglumis.	J. Plant Physiol.	174	49-54	2015		
41873	25765300	Yuan S., Xu B., Zhang J., Xie Z., Cheng Q., Yang Z., Cai Q., Huang B.	Comprehensive analysis of CCCH-type zinc finger family genes facilitates functional gene discovery and reflects recent allopolyploidization event in tetraploid switchgrass.	BMC Genomics	16	129	2015		
41874	25741357	Todaka D., Shinozaki K., Yamaguchi-Shinozaki K.	Recent advances in the dissection of drought-stress regulatory networks and strategies for development of drought-tolerant transgenic rice plants.	Front Plant Sci	6	84	2015		
41875	25700981	Wang Y., Zeng H., Zhou X., Huang F., Peng W., Liu L., Xiong W., Shi X., Luo M.	Transformation of rice with large maize genomic DNA fragments containing high content repetitive sequences.	Plant Cell Rep.			2015		
41876	25689273	Spindel J., Begum H., Akdemir D., Virk P., Collard B., Redo?a E., Atlin G., Jannink J.L., McCouch S.R.	Genomic selection and association mapping in rice (Oryza sativa): effect of trait genetic architecture, training population composition, marker number and statistical model on accuracy of rice genomic selection in elite, tropical rice breeding lines.	PLoS Genet.	11(2)	e1004982	2015		
41877	25447356	Azizi P., Rafii M.Y., Maziah M., Abdullah S.N., Hanafi M.M., Latif M.A., Rashid A.A., Sahebi M.	Understanding the shoot apical meristem regulation: a study of the phytohormones, auxin and cytokinin, in rice.	Mech. Dev.	135	1-15	2015		
41878	25705117	Arbelaez J.D., Moreno L.T., Singh N., Tung C.W., Maron L.G., Ospina Y., Martinez C.P., Grenier C., Lorieux M., McCouch S.	Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O.sativa cv. Curinga.	Mol. Breed.	35(2)	81			
41879	25710173	Guo Y., Zhu C., Gan L., Ng D., Xia K.	Effects of exogenous gibberellic acid3 on iron and manganese plaque amounts and iron and manganese uptake in rice.	PLoS ONE	10(2)	e0118177	2015		
41880	25667113	Fujimaki S., Maruyama T., Suzui N., Kawachi N., Miwa E., Higuchi K.	Base to Tip and Long-Distance Transport of Sodium in the Root of Common Reed [Phragmites australis (Cav.) Trin. ex Steud.] at Steady State Under Constant High-Salt Conditions.	Plant Cell Physiol.	56(5)	943-50	2015		
41881	25300838	Hiei Y., Ishida Y., Komari T.	Rice, indica (Oryza sativa L.).	Methods Mol. Biol.	1223	155-67	2015		
41882	25585673	Yap A., Kindgren P., Colas des Francs-Small C., Kazama T., Tanz S.K., Toriyama K., Small I.	AEF1/MPR25 is implicated in RNA editing of plastid atpF and mitochondrial nad5 and also promotes atpF splicing in Arabidopsis and rice.	Plant J.			2015		
41883	25586315	Vega-S?nchez ME., Loqu? D., Lao J., Catena M., Verhertbruggen Y., Herter T., Yang F., Harholt J., Ebert B., Baidoo E.E., Keasling J.D., Scheller H.V., Heazlewood J.L., Ronald P.C.	Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls.	Plant Biotechnol. J.			2015		
41884	25480005	Li Y., Zhang J., Zhang X., Fan H., Gu M., Qu H., Xu G.	Phosphate transporter OsPht1;8 in rice plays an important role in phosphorus redistribution from source to sink organs and allocation between embryo and endosperm of seeds.	Plant Sci.	230	23-32	2015		
41885	25586098	Shiraya T., Mori T., Maruyama T., Sasaki M., Takamatsu T., Oikawa K., Itoh K., Kaneko K., Ichikawa H., Mitsui T.	Golgi/plastid-type manganese Superoxide dismutase involved in heat-stress tolerance during grain filling of rice.	Plant Biotechnol. J.			2015		
41886	25480003	Tianpei X., Li D., Qiu P., Luo J., Zhu Y., Li S.	Scorpion peptide LqhIT2 activates phenylpropanoid pathways via jasmonate to increase rice resistance to rice leafrollers.	Plant Sci.	230	1-11	2015		
41887	25581614	Taniguchi M., Ochiai A., Takahashi K., Nakamichi S.I., Nomoto T., Saitoh E., Kato T., Tanaka T.	Antimicrobial activity and mechanism of action of a novel cationic alpha-helical octadecapeptide derived from alpha-amylase of rice.	Biopolymers			2015		
41888	25567127	Li Y., Zhang X., Chen X., Romeis J., Yin X., Peng Y.	Consumption of Bt rice pollen containing Cry1C or Cry2A does not pose a risk to Propylea japonica (Thunberg) (Coleoptera: Coccinellidae).	Sci Rep	5	7679	2015		
41889	25461700	Hu Y., Lai Y.	Identification and expression analysis of rice histone genes.	Plant Physiol. Biochem.	86	55-65	2015	_,_	HTA713 ,HTA705
41890	25559339	Sutoh K., Washio K., Imai R., Wada M., Nakai T., Yamauchi D.	An N-terminal region of a Myb-like protein is involved in its intracellular localization and activation of a gibberellin-inducible proteinase gene in germinated rice seeds.	Biosci. Biotechnol. Biochem.		1-13	2015		
41891	25599829	Shan Q., Zhang Y., Chen K., Zhang K., Gao C.	Creation of fragrant rice by targeted knockout of the OsBADH2 gene using TALEN technology.	Plant Biotechnol. J.			2015		
41892	25619895	Chen H.W., Shao K.H., Wang S.J.	Light-modulated seminal wavy roots in rice mediated by nitric oxide-dependent signaling.	Protoplasma			2015		
41893	25624395	Cheng H., Liu H., Deng Y., Xiao J., Li X., Wang S.	The WRKY45-2 WRKY13 WRKY42 transcriptional regulatory cascade is required for rice resistance to fungal pathogen.	Plant Physiol.	167(3)	1087-99	2015		
41894	25605006	Cui X., Wei Y., Wang Y.H., Li J., Wong F.L., Zheng Y.J., Yan H., Liu S.S., Liu J.L., Jia B.L., Zhang S.H.	Proteins interacting with mitochondrial ATP-dependent Lon protease (MAP1) in Magnaporthe oryzae are involved in rice blast disease.	Mol. Plant Pathol.			2015		
41895	25614066	Kadam N.N., Yin X., Bindraban P.S., Struik P.C., Jagadish K.S.	Does Morphological and Anatomical Plasticity during the Vegetative Stage Make Wheat More Tolerant of Water Deficit Stress Than Rice?	Plant Physiol.	167(4)	1389-401	2015		
41896	25642300	Yang Z., Ma H., Hong H., Yao W., Xie W., Xiao J., Li X., Wang S.	Transcriptome-based analysis of mitogen-activated protein kinase cascades in the rice response to Xanthomonas oryzae infection.	Rice (N Y)	8	4	2015		
41897	25653654	Zhao J., Zhang J., Zhang W., Wu K., Zheng F., Tian L., Liu X., Duan J.	Expression and functional analysis of the plant-specific histone deacetylase HDT701 in rice.	Front Plant Sci	5	764	2014		
41898	25636202	Gao Y., Jiang W., Dai Y., Xiao N., Zhang C., Li H., Lu Y., Wu M., Tao X., Deng D., Chen J.	A maize Phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice.	Plant Mol. Biol.	87(4-5)	413-28	2015		
41899	25605284	Xu J., Zhou L., Venturi V., He Y.W., Kojima M., Sakakibari H., H?fte M., De Vleesschauwer D.	Phytohormone-mediated interkingdom signaling shapes the outcome of rice-Xanthomonas oryzae pv. oryzae interactions.	BMC Plant Biol.	15	10	2015		
41900	25624002	Mani N., Ramakrishna K., Suguna K.	Characterization of rice small heat shock proteins targeted to different cellular organelles.	Cell Stress Chaperones	20(3)	451-60	2015		
41901	25616007	Zhu D.W., Zhong H., Zeng Q.L., Yin Y.	Prediction of methylmercury accumulation in rice grains by chemical extraction methods.	Environ. Pollut.	199	1-9	2015		
41902	25637374	Kurotani K., Hayashi K., Hatanaka S., Toda Y., Ogawa D., Ichikawa H., Ishimaru Y., Tashita R., Suzuki T., Ueda M., Hattori T., Takeda S.	Elevated Levels of CYP94 Family Gene Expression Alleviate the Jasmonate Response and Enhance salt tolerance in Rice.	Plant Cell Physiol.	56(4)	779-89	2015		
41903	25645894	Ma J., Cai H., He C., Zhang W., Wang L.	A hemicellulose-bound form of silicon inhibits cadmium ion uptake in rice (Oryza sativa) cells.	New Phytol.	206(3)	1063-74	2015		
41904	25646153	Gopalakrishnan S., Srinivas V., Alekhya G., Prakash B., Kudapa H., Rathore A., Varshney R.K.	The extent of grain yield and plant growth enhancement by plant growth-promoting broad-spectrum Streptomyces sp. in chickpea.	Springerplus	4	31	2015		
41905	25634987	Mandadi K.K., Scholthof K.B.	Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.	Plant Cell	27(1)	71-85	2015		
41906	25621512	Al-Babili S., Bouwmeester H.J.	Strigolactones, a novel carotenoid-derived plant hormone.	Annu Rev Plant Biol	66	161-86	2015		
41907	25655560	Dehury B., Maharana J., Sahoo B.R., Sahu J., Sen P., Modi M.K., Barooah M.	Molecular recognition of avirulence protein (avrxa5) by eukaryotic transcription factor xa5 of rice (Oryza sativa L.): insights from molecular dynamics simulations.	J. Mol. Graph. Model.	57	49-61	2015		
41908	25615266	Xiong J., Yang Y., Fu G., Tao L.	Novel roles of hydrogen peroxide (H?O?) in regulating pectin synthesis and demethylesterification in the cell wall of rice (Oryza sativa) root tips.	New Phytol.	206(1)	118-26	2015		
41909	25627217	Lu J., Robert C.A., Riemann M., Cosme M., M?ne-Saffran? L., Massana J., Stout M.J., Lou Y., Gershenzon J., Erb M.	Induced jasmonate signaling leads to contrasting effects on root damage and herbivore performance.	Plant Physiol.	167(3)	1100-16	2015		
41910	25620876	Mizobuchi R., Sato H., Fukuoka S., Tsushima S., Yano M.	Fine mapping of RBG2, a quantitative trait locus for resistance to Burkholderia glumae, on rice chromosome 1.	Mol. Breed.	35	15			
41911	25643735	Verma V., Sivaraman J., Srivastava A.K., Sadanandom A., Kumar P.P.	Destabilization of interaction between cytokinin signaling intermediates AHP1 and ARR4 modulates Arabidopsis development.	New Phytol.	206(2)	726-37	2015		
41912	25607985	Holton N., Nekrasov V., Ronald P.C., Zipfel C.	The phylogenetically-related pattern recognition receptors EFR and XA21 recruit similar immune signaling components in monocots and dicots.	PLoS Pathog.	11(1)	e1004602	2015		
41913	25576299	Huang J., Hu R., Qiao F., Yin Y., Liu H., Huang Z.	Impact of insect-resistant GM rice on pesticide use and farmers' health in China.	Sci China Life Sci			2015		
41914	25582220	Zhang F., Wang L., Wang R., Ying Y., Wu J.	Simple Screening Strategy with Only Water Bath Needed for the Identification of Insect-resistant Genetically Modified Rice.	Anal. Chem.			2015		
41915	25587938	Rico C.M., Peralta-Videa JR., Gardea-Torresdey JL.	Differential Effects of Cerium Oxide Nanoparticles on Rice, Wheat, and Barley Roots: A Fourier Transform Infrared (FT-IR) Microspectroscopy Study.	Appl Spectrosc			2015		
41916	25928563	Liao J.L., Zhou H.W., Peng Q., Zhong P.A., Zhang H.Y., He C., Huang Y.J.	Transcriptome changes in rice (Oryza sativa L.) in response to high night temperature stress at the early milky stage.	BMC Genomics	16	18	2015		
41917	25627243	Kumar V., Singh A., Mithra S.V., Krishnamurthy S.L., Parida S.K., Jain S., Tiwari K.K., Kumar P., Rao A.R., Sharma S.K., Khurana J.P., Singh N.K., Mohapatra T.	Genome-wide association mapping of salinity tolerance in rice (Oryza sativa).	DNA Res.	22(2)	133-45	2015		
41918	23028921	Cockram J., Thiel T., Steuernagel B., Stein N., Taudien S., Paul C Bailey, Donal M O'Sullivan	Genome dynamics explain the evolution of flowering time CCT domain gene families in the Poaceae.	PLoS ONE	7(9)	e45307	2012	_,_,_,_,_,_,PRR73,_,_,_,TOC1,PRR59,_,_,_,_,_,HD2,_,_,SE1,_,_,_,_,_,_,_,_,GHD7,_,_,_,PRR95,_,_	OsCCT03, OsCMF3,OsBBX25, OsG, OsCCT29, BBX25, CCT29,OsCCT41, OsCMF14,OsCCT02, OsCMF2, OsSTA46,OsCCT10, OsCMF4,OsCCT25, OsCMF7,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,OsCCT39, OsCMF13,OsNRR, NRR, NRRa, NRRb, OsCCT18, OsCMF6,  CCT18, CMF6, CRCT, Os CRCT,OsBBX28, OsCCT32, OsQ, BBX28, CCT32,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, COL15, OsCOL15/OsBBX26, Hd1-3,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsBBX15, OsCCT19, OsS, OsSTA162, BBX15, CCT19, STA162,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,OsBBX3, OsF, OsCCT05, BBX3, CCT05,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsP, OsBBX9, OsCCT12, BBX9, CCT12,OsCCT34, OsCMF10, CO9,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsBBX20, OsE, OsCCT23, BBX20, CCT23,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2,OsBBX23, OsCCT27, BBX23, CCT27, OsR, OsCOL13, COL13,OsBBX17, BBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsCCT01, OsCMF1,OsBBX12, OsC, OsCCT16, BBX12, CCT16,OsCCT17, OsCMF5,OsCMF9, CMF9,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsBBX19, BBX19, OsM, DTH2, qDTH-2, OsCCT22, CCT22,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06,OsCCT36, OsCMF12,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, BBX8, CCT09, Ghd2,OsCCT35, OsCMF11, OsH 
41919	20518745	Zhang Y., Sun K., Francisco J Sandoval, Santiago K., Roje S.	One-carbon metabolism in plants: characterization of a plastid serine hydroxymethyltransferase.	Biochem. J.	430(1)	97-105	2010	_,_,_,_,_	OsSHM5, SHM5, OsSHMT5, SHMT5, OsSHTM2, SHTM2,OsSHM1, SHM1, OsSHMT1, SHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3,OsSHM3, SHM3, OsSHMT3, SHMT3, OsSHTM5, SHTM5,OsSHM2, SHM2, OsSHMT2, SHMT2, OsSHTM4, SHTM4,OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1
41920	17031029	Kitanaga Y., Jian C., Hasegawa M., Yazaki J., Kishimoto N., Kikuchi S., Nakamura H., Ichikawa H., Asami T., Yoshida S., Yamaguchi I., Suzuki Y.	Sequential regulation of gibberellin, brassinosteroid, and jasmonic acid biosynthesis occurs in rice coleoptiles to control the transcript levels of anti-microbial thionin genes.	Biosci. Biotechnol. Biochem.	70(10)	2410-9	2006	_,_,_,_,_,_,_,_,_,_,_,_	Osthi9, thi9,Osthi8, thi8,OsTHI2, THI2, Osthi3, thi3,Osthi4, thi4,Osthi12, thi12,OsTHI3, THI3, Osthi1, thi1,Osthi11, thi11,OsWD40-75, Osthi6, thi6,OsTHI5, THI5, Osthi5,Osthi7, thi7,OsTHI1, THI1, Osthi2, thi2,Osthi10, thi10
41921	18790996	Chung T., Suttangkakul A., Richard D Vierstra	The ATG autophagic conjugation system in maize: ATG transcripts and abundance of the ATG8-lipid adduct are regulated by development and nutrient availability.	Plant Physiol.	149(1)	220-34	2009	ATG4,ATG8D,ATG7,ATG8E,ATG8B,ATG10A,ATG10B,ATG12,ATG4A,ATG5,ATG8,ATG3B,ATG3A	Atg4, OsAtg4, APG4, Atg4b, OsATG4b ,OsATG8d, Atg8e,OsATG7, Atg7,OsATG8e, OsATG8d, Atg8d,OsATG8b, Atg8b,OsATG10a, Atg10a,OsATG10b, Atg10b,OsATG12, Atg12,OsATG4a, Atg4a,OsATG5, Atg5,Atg8, OsAtg8, APG8, OsATG8a, Atg8a,OsATG3b, Atg3b,OsATG3a, Atg3a
41922	16284308	Esperanza Gonz?lez, Solano R., Rubio V., Leyva A., Javier Paz-Ares	PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1 is a plant-specific SEC12-related protein that enables the endoplasmic reticulum exit of a high-affinity phosphate transporter in Arabidopsis.	Plant Cell	17(12)	3500-12	2005	PHF1	OsPHF1, OsWD40-137, OsSEC12
41923	0	Hibara K., Nagato Y.	OsNAM and OsCUC3 are expressed specifically in organ boundaries	RGN	23	96-97	2006	CUC3,NAM	OsCUC3, ONAC107, NAC107,OsNAM, OMTN5, ONAC092, ONAC92, NAC92, CUC2, OsNAM/CUC2
41924	11726707	Y Saijo, N Kinoshita, K Ishiyama, S Hata, J Kyozuka, T Hayakawa, T Nakamura, K Shimamoto, T Yamaya, K Izui	A Ca(2+)-dependent protein kinase that endows rice plants with cold- and salt-stress tolerance functions in vascular bundles.	Plant Cell Physiol.	42(11)	1228-33	2001	CDPK7,RAB16A	OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
41925	8883374	A Ono, T Izawa, N H Chua, K Shimamoto	The rab16B promoter of rice contains two distinct abscisic acid-responsive elements.	Plant Physiol.	112(2)	483-91	1996	RAB16B,RAB16A	rab21, OsLEA28, OsRAB16D, OsRAB16b,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
41926	15208422	David R Nelson, Mary A Schuler, Suzanne M Paquette, Daniele Werck-Reichhart, S?ren Bak	Comparative genomics of rice and Arabidopsis. Analysis of 727 cytochrome P450 genes and pseudogenes from a monocot and a dicot.	Plant Physiol.	135(2)	756-72	2004		
41927	0	Rita SHARMA, Meenu KAPOOR, Akhilesh K. TYAGI, Sanjay KAPOOR	Comparative transcript profiling of TCP family genes provide insight into gene functions and diversification in rice and Arabidopsis	J Plant Mol Biol Biotechnol	1(1)	24-38	2010	_,_,_,_,_,REP1,_,_,_,_,_,_,_,FC1,_,_,_,_,_,_,_,_,_,_,_,_	PCF1, OsPCF1,PCF2, OsPCF2,OsTCP17, TCP17,OsTCP25, TCP25,OsPCF8, PCF8,OsTCP24, REP1, TCP24, SDP1, SDP1/REP1,OsTCP19, TCP19,OsTCP21, TCP21,OsTCP22, OsTCP15, TCP22, TCP15,OsTCP28, TCP28,OsTCP12, TCP12,OsTCP20, TCP20,OsTCP9, TCP9,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,OsTCP18, TCP18,OsPCF6, PCF6,OsTCP27, TCP27,OsPCF7, PCF7,OsTCP5, TCP5,OsTCP11, TCP11,OsTCP7, CHE, TCP7,OsTCP3, TCP3,OsTCP6, TCP6,OsPCF5, PCF5,PCF3, OsPCF3,OsTCP10, OsSTA77, TCP10, STA77
41928	0	Isshiki M., Matsuda Y., Takasaki A., Hann Ling Wong, Satoh H., Shimamoto K.	du3, a mRNA cap-binding protein gene, regulates amylose content in Japonica rice seeds	Plant Biotechnology	25(5)	483-487	2008	WX1,DU3	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,du3, OsCBP20, OsCBP20/du3, CBP20
41929	22645574	Tegeder M., John M Ward	Molecular Evolution of Plant AAP and LHT Amino Acid Transporters.	Front Plant Sci	3	21	2012	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsAAP12C, AAP12C, OsAAP2, AAP2,OsAAP11E, AAP11E, OsAAP8, AAP8,OsAAP11D, AAP11D, OsAAP12, AAP12,OsAAP11C, AAP11C, OsAAP11, AAP11,OsAAP7B, AAP7B, OsAAP14, AAP14,OsAAP11B, AAP11B, OsAAP15, AAP15,OsAAP7A, AAP7A, OsAAP13, AAP13,OsHT, OsLHT1, LHT1,OsLHT2, LHT2,OsLHT8, LHT8, OsLHT3, LHT3,OsAAP10B, AAP10B, OsAAP4, AAP4,OsAAP10D, AAP10D, OsAAP6, AAP6, qPC1,OsLHT9, LHT9, OsLHT4, LHT4,OsAAP12A, AAP12A, OsAAP3, AAP3,OsAAP12B, AAP12B, OsAAP18, AAP18,OsAAP6, AAP6, OsAAP1, AAP1,OsAAP3, OsAAP3, OsAAP9, AAP9,OsAAP7C, AAP7C, OsAAP10, AAP10,OsAAP10A, AAP10A, OsAAP17, AAP17,OsAAP11F, AAP11F, OsAAP7, AAP7, FCO7,OsLHT4A, LHT4A, OsLHT6, LHT6,OsLHT7, LHT7, OsLHT5, LHT5,OsAAP11A, AAP11A, OsAAP16, AAP16,OsAAP11G, AAP11G, OsAAP19, AAP19,OsAAP10C, AAP10C, OsAAP5, AAP5
41930	0	Minobe Y, Monna L, Kiazawa N, Maehara Y, Masuda H	Gene Lhd4 controlling plant flowering and utilization thereof.	Japan Patent Kokai 2004-003122(2004-09-23)			2004		
41931	12355160	Song F., Robert M Goodman	OsBIMK1, a rice MAP kinase gene involved in disease resistance responses.	Planta	215(6)	997-1005	2002	MAPK4,MSRMK2,_,BWMK1	OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, ,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S
41932	15608331	Xiao-Hua Yang, Zhi-Hong Xu, Hong-Wei Xue	Arabidopsis membrane steroid binding protein 1 is involved in inhibition of cell elongation.	Plant Cell	17(1)	116-31	2005	MSBP1,MSBP2	OsMSBP1,OsMSBP2, OsMSBP1 
41933	7994178	W R Hess, B Hoch, P Zeltz, T H?bschmann, H K?ssel, T B?rner	Inefficient rpl2 splicing in barley mutants with ribosome-deficient plastids.	Plant Cell	6(10)	1455-65	1994	RPL2	rpl2
41934	20192745	Mizutani M., Ohta D.	Diversification of P450 genes during land plant evolution.	Annu Rev Plant Biol	61	291-315	2010	EUI1,CPS4,PLA1,D10,D35,KS4,GO,CYP99A2,CYP99A3,MAS,D17	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,pla1, OsPLA1, plt1, CYP78A11,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,CYP99A2,,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 ,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17
41935	21421368	Marcus Vin?cius Loss Sperandio, Leandro Azevedo Santos, Carlos Alberto Bucher, Manlio Silvestre Fernandes, Sonia Regina de Souza	Isoforms of plasma membrane H(+)-ATPase in rice root and shoot are differentially induced by starvation and resupply of NO?? or NH?+.	Plant Sci.	180(2)	251-8	2011	AMT1;1,AHA4,AHA5,AHA3,AHA1,AHA2,AHA7,AHA8,NRT2.1,AMT1;2	OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OSA4, OsA4, osAHA4, AHA4,OSA5, OsA5, osAHA5, AHA5,OSA3, OsA3, osAHA3, AHA3, PAM3,OSA1, OsA1, osAHA1, AHA1,OSA2, OsA2, osAHA2, AHA2, OsPMA2,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,OsNRT2.1, OsNRT2.2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
41936	22404471	Kobayashi T., Naoko K Nishizawa	Iron uptake, translocation, and regulation in higher plants.	Annu Rev Plant Biol	63	131-52	2012	IDEF1,YSL15,TOM1,_,NAS1,IRT1,YSL18,_,ENA1,_,_,_,DMAS1,NAC36,YSL2,_,_,_,_	OsLFL2, LFL2, OsIDEF1,OsYSL15, OsYs7,OsTOM1, ZIFL4, OsZIFL4 ,OsMTN, MTN,OsNAS1,OsIRT1,OsYSL18, OsYs2 ,PEZ1, OsPEZ1,OsENA1,OsIDI4, IDI4,MIT,OsDEP, DEP,OsDMAS1,ONAC036, ONAC36, ONAC038, ONAC38, IDEF2, OsIDEF2,OsYSL2, Os-YSL2, OsYs6 ,OsMTK, OsMTK1, MTK, MTK1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsSAM2, OsSAMS2, OS-SAMS2
41937	0	Jairin J., Teangdeerith S., Leelagud P., Phengrat K., Vanavichit A., Toojinda T.	Physical mapping of Bph3, a brown planthopper resistance locus in rice	Mj. Int. J. Sci. Tech.	01(2)	166-177	2007	BPH3	Bph3
41938	0	GUO Ze-Jian, KAN Yun-Chao, CHEN Xu-Jun, LI De-Bao, WANG Dao-Wen	Characterization of a rice WRKY gene Whose Expression Is Induced upon Pathogen Attack and Mechanical Wounding	Acta Bot. Sin.	46(8)	955-964	2004	WRKY90	OsWRKY90
41939	20217243	Felipe Klein Ricachenevsky, Raul Antonio Sperotto, Paloma Koprovski Menguer, Janette Palma Fett	Identification of Fe-excess-induced genes in rice shoots reveals a WRKY transcription factor responsive to Fe, drought and senescence.	Mol. Biol. Rep.	37(8)	3735-45	2010	OCP,_,WRKY90	ocp*, ocp,OsGAP1, GAP1,OsWRKY90
41940	0	Ahmadikhah A., I. Karlov G.	Molecular mapping of the fertility-restoration gene Rf4 for WA-cytoplasmic male sterility in rice	Plant Breeding	125	363-367	2006	_	Rf4, Rf-4, PPR782a, PPR9, PPR3
41941	15200956	Matthew W Jones-Rhoades, David P Bartel	Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.	Mol. Cell	14(6)	787-99	2004	MIR169Q	miR169q, osa-miR169q, osa-MIR169q
41942	19796675	Jian X., Zhang L., Li G., Zhang L., Wang X., Cao X., Fang X., Chen F.	Identification of novel stress-regulated microRNAs from Oryza sativa L.	Genomics	95(1)	47-55	2010		
41943	25947154	Gutjahr C., Sawers R.J., Marti G., Andr?s-Hern?ndez L., Yang S.Y., Casieri L., Angliker H., Oakeley E.J., Wolfender J.L., Abreu-Goodger C., Paszkowski U.	Transcriptome diversity among rice root types during asymbiosis and interaction with arbuscular mycorrhizal fungi.	Proc. Natl. Acad. Sci. U.S.A.	112(21)	6754-9	2015	_,BC7,_,_,BC6	prx68,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsSK3, SK3,,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88
41944	25985140	Li X.M., Chao D.Y., Wu Y., Huang X., Chen K., Cui L.G., Su L., Ye W.W., Chen H., Chen H.C., Dong N.Q., Guo T., Shi M., Feng Q., Zhang P., Han B., Shan J.X., Gao J.P., Lin H.X.	Natural alleles of a proteasome alpha2 subunit gene contribute to thermotolerance and adaptation of African rice.	Nat. Genet.	47(7)	827-33	2015	_,_,TT1	,PAB2, OsPAB2,OsPAB1, PAB1, OsTT1
41945	25957386	Liu X., Zhou S., Wang W., Ye Y., Zhao Y., Xu Q., Zhou C., Tan F., Cheng S., Zhou D.X.	Regulation of histone methylation and reprogramming of gene expression in the rice inflorescence meristem.	Plant Cell	27(5)	1428-44	2015	IAA8,CLF,WFP,MADS27,MADS23,GN1A,GH3-2,PAP2,ERF62,TDC1,IDS1,YUCCA9,SAUR23,NL1,CKX4,EG2,_,ERF102,ERF136,MADS18,SAUR11,RAP1A,IAA31,GH3-6,MADS56,RAP1B	OsIAA8,OsSET24, SDG711, EZ1, OsCLF,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS23, MADS-23,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsGH3-2, OsGH3.2, GH3.2,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125,OsTDC, TDC2, OsTDC1,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2 ,OsYUCCA9, OsYUC9, YUC9,OsSAUR23,nl1, OsGATA15, GATA15,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,JMJ703,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsERF#136, OsERF136, AP2/EREBP#106, AP2/EREBP106, AP2-106,OsMADS18, MADS2, OsMADS2, MADS28, OsMADS28, FDRMADS7, OsMADS18/28,OsSAUR11,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsIAA3, OsIAA31,OsGH3-6,OsMADS56, FDRMADS8, RMADS214,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10
41946	26021733	Kim N.H., Kwak J., Baik J.Y., Yoon M.R., Lee J.S., Yoon S.W., Kim I.H.	Changes in lipid substances in rice during grain development.	Phytochemistry	116	170-9	2015		
41947	26002868	Huang D., Wang S., Zhang B., Shang-Guan K., Shi Y., Zhang D., Liu X., Wu K., Xu Z., Fu X., Zhou Y.	A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice.	Plant Cell	27(6)	1681-96	2015	NAC31,NAC29,_,SLR1	ONAC031, ONAC31, OsSWN3,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2 ,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
41948	25991736	Wang R., Jing W., Xiao L., Jin Y., Shen L., Zhang W.	The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor.	Plant Physiol.	168(3)	1076-90	2015	_,HKT1,HKT4,HKT8	OsMYBc, MYBc,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
41949	25954944	Zhao M., Liu B., Wu K., Ye Y., Huang S., Wang S., Wang Y., Han R., Liu Q., Fu X., Wu Y.	Regulation of OsmiR156h through Alternative Polyadenylation Improves grain yield in Rice.	PLoS ONE	10(5)	e0126154	2015	WFP,SDT,SD1	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
41950	26037695	Khew C.Y., Teo C.J., Chan W.S., Wong H.L., Namasivayam P., Ho C.L.	Brassinosteroid insensitive 1-associated kinase 1 (OsI-BAK1) is associated with grain filling and leaf development in rice.	J. Plant Physiol.	182	23-32	2015	_	OsI-BAK1, I-BAK1
41951	25977235	Ohta M., Takaiwa F.	OsHrd3 is necessary for maintaining the quality of endoplasmic reticulum-derived protein bodies in rice endosperm.	J. Exp. Bot.	66(15)	4585-93	2015	_,_,HRD3,BZIP50,_,HRD1	Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsHrd3, Hrd3,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsOS-9, OS-9, OS9,OsHrd1, Hrd1
41952	26233894	Tian C., Zuo Z., Qiu J.L.	Identification and Characterization of ABA-Responsive MicroRNAs in Rice.	J Genet Genomics	42(7)	393-402	2015	MIR390,MIR397B,MIR169,MIR169F,MIR1879,TRE1,MIR397A,MIR408,MIR1846E,MIR1425,ABA1,MIR169N,MIR528,MIR162B	OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,miR169f, osa-miR169f, osa-MIR169f, osa-miR169f.2,miR1879, osa-miR1879, osa-MIR1879,OsTRE, OsTRE1,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,miR1846e, osa-miR1846e, osa-MIR1846e,OsmiR1425, miR1425, osa-miR1425, osa-MIR1425, osa-miR1425-3p, osa-miR1425-5p,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,miR169n, osa-miR169n, osa-MIR169n,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR162b, osa-miR162b, osa-MIR162b 
41953	25951042	Kim H.B., Cho J.I., Ryoo N., Shin D.H., Park Y.I., Hwang Y.S., Lee S.K., An G., Jeon J.S.	Role of rice cytosolic hexokinase OsHXK7 in sugar signaling and metabolism.	J Integr Plant Biol			2015	HXK7,AMY3D,HXK6,HXK5	OsHXK7,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,OsHXK6,OsHXK5
41954	26089149	Zhang D., Liu M., Tang M., Dong B., Wu D., Zhang Z., Zhou B.	Repression of microRNA biogenesis by silencing of OsDCL1 activates the basal resistance to Magnaporthe oryzae in rice.	Plant Sci.	237	24-32	2015	MIR167I,MIR156A,MIR156I,MIR166A,MIR167D,MIR1862D,MIR167E,DCL2B,DCL2A,MIR166F,DCL3A,MIR169I,MIR166B,MIR5794,MIR1882E,MIR167F,MIR167J,MIR162A,MIR166C,MIR396E,MIR168A,MIR167H,MIR156D,SHO1,DCL1,MIR156B,MIR156C,MIR156E,MIR156J,MIR156F,MIR156G,SDT,MIR167G,MIR166N,MIR166D	miR167i, osa-miR167iosa-miR167i-3p osa-miR167i-5p,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR156i, OsmiR156i, osmiR156i, osa-miR156i, osa-MIR156i,miR166a, osa-miR166aosa-miR166a-3p osa-miR166a-5p,miR167d, osa-miRNA167d, osa-miR167d, osa-miR167d-3p, osa-miR167d-5p,miR1862d, osa-miR1862d, osa-MIR1862d,miR167e, osa-miR167e, osa-miRNA167e osa-miR167e-3p osa-miR167e-5p,OsDCL2b,OsDCL2a, OsDCL2,miR166f, osa-miR166f,OsDCL3a,miR169i, osa-miR169i, osa-MIR169iosa-miR169i-3p osa-miR169i-5p.2,miR166b, osa-miR166bosa-miR166b-3p osa-miR166b-5p,miR5794, osa-miR5794, osa-MIR5794,miR1882e, osa-miR1882e, osa-MIR1882e,miR167f, osa-miR167f, osa-miRNA167f ,miR167j, osa-miR167j, osa-MIR167j,miR162a, osa-miR162a, osa-MIR162a,miR166c, osa-miR166cosa-miR166c-3p osa-miR166c-5p,miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,Dcl1, OsDCL1, osDCL1, Os-DCL1,miR156b, OsmiR156b, osmiR156b, osa-miR156b, osa-MIR156b, miR156b*osa-miR156b-3p osa-miR156b-5p,miR156c, OsmiR156c, osmiR156c, osa-miR156c,osa-MIR156c, miR156c*osa-miR156c-3p osa-miR156c-5p,miR156e, OsmiR156e, osmiR156e, osa-miR156e, osa-MIR156e,miR156j, OsmiR156j, osmiR156j, osa-miR156j, osa-MIR156josa-miR156j-3p osa-miR156j-5p,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p,miR156g, OsmiR156g, osmiR156g, osa-miR156g, osa-MIR156gosa-miR156g-3p osa-miR156g-5p,miR156h, OsmiR156h, osmiR156h, osa-miR156h, osa-MIR156hosa-miR156h-3p osa-miR156h-5p,miR167g, osa-miR167g, osa-miRNA167g ,miR166n, osa-miR166n, osa-MIR166n, miR166j, osa-miR166j, osa-MIR166j, osa-miR166j-3p, osa-miR166j-5p,miR166d, osa-miR166dosa-miR166d-3p osa-miR166d-5p
41955	25956502	Maegawa K., Takii R., Ushimaru T., Kozaki A.	Evolutionary conservation of TORC1 components, TOR, Raptor, and LST8, between rice and yeast.	Mol. Genet. Genomics			2015	_,_,_,_	,OsTOR, TOR,OsWD40-81, OsLST8, LST8,
41956	26023934	Fan T., Li X., Yang W., Xia K., Ouyang J., Zhang M.	Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and shoot apical meristem Maintenance by Repressing Four OsHAM Transcription Factors.	PLoS ONE	10(5)	e0125833	2015	MIR171C,HD3A,FON2,HAM4,RFT1,HAM3,HAM1,HAM2	miR171c, osa-miR171cosa-miR171c-3p osa-miR171c-5p,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,fon2, FON4, OsFON4, FON2/FON4, TG1,OsHAM4,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsHAM3, OsGRAS-21, OsGRAS21, GRAS-21, GRAS21,OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9,OsHAM2, OsGRAS-8, OsGRAS8, GRAS-8, GRAS8
41957	25990214	Wang X.Q., Yoon M.Y., He Q., Kim T.S., Tong W., Choi B.W., Lee Y.S., Park Y.J.	Natural variations in OsgammaTMT contribute to diversity of the alpha-tocopherol content in rice.	Mol. Genet. Genomics			2015	_	OsVTE4, OsgammaTMT, gammaTMT
41958	26012744	Xia K., Ou X., Gao C., Tang H., Jia Y., Deng R., Xu X., Zhang M.	OsWS1 involved in cuticular wax biosynthesis is regulated by osa-miR1848.	Plant Cell Environ.			2015	_,MIR1848	OsWS1, WS1,miR1848, osa-miR1848, osa-MIR1848
41959	26029232	Sharma N., Tripathi A., Sanan-Mishra N.	Profiling the expression domains of a rice-specific microRNA under stress.	Front Plant Sci	6	333	2015	MIR820E,NAC123,MIR820B,MIR820D,DRM2,MIR820A,PIP1A,MIR820C	miR820e, osa-miR820e, osa-MIR820e,ONAC123, N77,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,miR820d, osa-miR820d, osa-MIR820d,OsDRM2, osdrm2, DRM2-1,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c
41960	25990386	Wang Z.Q., Li G.Z., Gong Q.Q., Li G.X., Zheng S.J.	OsTCTP, encoding a translationally controlled tumor protein, plays an important role in mercury tolerance in rice.	BMC Plant Biol.	15	123	2015	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb
41961	26057797	Raman S., Suguna K.	Functional characterization of heat-shock protein 90 from Oryza sativa and crystal structure of its N-terminal domain.	Acta Crystallogr F Struct Biol Commun	71(Pt 6)	688-96	2015	_	OsHsp90, HSP90
41962	25970642	Ye Y., Yuan J., Chang X., Yang M., Zhang L., Lu K., Lian X.	The Phosphate Transporter Gene OsPht1;4 Is Involved in Phosphate Homeostasis in Rice.	PLoS ONE	10(5)	e0126186	2015	_,LTN1,PHR2,PT4	OsSPX1, SPX1,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPHR2, Os-PHR2,OsPT4, PHT1-4, OsPht1;4, PHT1-2
41963	26089154	Sharma G., Giri J., Tyagi A.K.	Rice OsiSAP7 negatively regulates ABA stress signalling and imparts sensitivity to water-deficit stress in Arabidopsis.	Plant Sci.	237	80-92	2015	SAP7	OsSAP7, OsiSAP7
41964	25957211	Raineri J., Wang S., Peleg Z., Blumwald E., Chan R.L.	The rice transcription factor OsWRKY47 is a positive regulator of the response to water deficit stress.	Plant Mol. Biol.	88(4-5)	401-13	2015	WRKY47,_,_	OsWRKY47,OsDUF26, CRRSP, OsCRRSP55, CRRSP55,CaMBP
41965	25983737	Guo H., Zhang W., Tian H., Zheng K., Dai X., Liu S., Hu Q., Wang X., Liu B., Wang S.	An auxin responsive CLE gene regulates shoot apical meristem development in Arabidopsis.	Front Plant Sci	6	295	2015	_	Os_CLE48, OsCLE48, CLE48
41966	26024762	Xu J., Zha M., Li Y., Ding Y., Chen L., Ding C., Wang S.	The interaction between nitrogen availability and auxin, cytokinin, and strigolactone in the control of shoot branching in rice (Oryza sativa L.).	Plant Cell Rep.	34(9)	1647-62	2015	PIN1A,D17,PIN1B,LRA1,FC1,IPT7,CKX9,IPT8,PIN9,IPT5,CKX1,CKX4,D10,D27,IPT4,CKX5	PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsPIN2, PIN2, OsLRA1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,OsIPT7,OsCKX9,OsIPT8,OsPIN9,OsIPT5,OsCKX1,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d27(d t), dt, dwf23, d27, OsD27,OsIPT4,OsCKX5, ckx5
41967	26053497	Hu B., Wang W., Ou S., Tang J., Li H., Che R., Zhang Z., Chai X., Wang H., Wang Y., Liang C., Liu L., Piao Z., Deng Q., Deng K., Xu C., Liang Y., Zhang L., Li L., Chu C.	Variation in NRT1.1B contributes to nitrate-use divergence between rice subspecies.	Nat. Genet.	47(7)	834-8	2015	_,_,_	OsNIA2, NIA2, OsNR2, NR2,OsNR1, NR1, nia1, OsNIA1, NIA1,NRT1.1B, OsNRT1.1B, OsNPF6.5, NPF6.5
41968	26123916	Zhan X., Sun B., Lin Z., Gao Z., Yu P., Liu Q., Shen X., Zhang Y., Chen D., Cheng S., Cao L.	Genetic mapping of a QTL controlling source-sink size and heading date in rice.	Gene			2015	RSR1	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1
41969	26068669	Janmohammadi M., Zolla L., Rinalducci S.	Low temperature tolerance in plants: Changes at the protein level.	Phytochemistry	117	76-89	2015		
41970	26082171	Mach J.	Domesticated versus Wild Rice? Bring It Awn!	Plant Cell	27(7)	1818	2015	LABA1	LOGL6, OsLOGL6, An-2
41971	26082172	Hua L., Wang D.R., Tan L., Fu Y., Liu F., Xiao L., Zhu Z., Fu Q., Sun X., Gu P., Cai H., McCouch S.R., Sun C.	LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice.	Plant Cell	27(7)	1875-88	2015	RR6,RR3,CYCD7;1,RR4,RR2,RR11,RR7,LABA1	OsRR6, rr6, Rra6, OsRRA6,OSRR3, OsRR3, rr3, Rra7, OsRRA7,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3,rr4, OsRR4, Rra3, OsRRA3,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsRR11, Rra8, OsRRA8, RR8,rr7, OsRR7, Rra5, OsRRA5,LOGL6, OsLOGL6, An-2
41972	26121399	Cai W., Liu W., Wang W.S., Fu Z.W., Han T.T., Lu Y.T.	Overexpression of Rat Neurons nitric oxide synthase in Rice Enhances Drought and Salt Tolerance.	PLoS ONE	10(6)	e0131599	2015	ERF42,NAC6,ATP6,CATB,CATA,_,DREB2A,_,LEA3-1	OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,atp6, OsPOX1, prx3, POX1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsRD29A, RD29A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
41973	26046379	Shen Y., Shen L., Shen Z., Jing W., Ge H., Zhao J., Zhang W.	The potassium transporter OsHAK21 functions in the maintenance of ion homeostasis and tolerance to salt stress in rice.	Plant Cell Environ.			2015	HAK21	OsHAK21
41974	26070439	Noda S., Koshiba T., Hattori T., Yamaguchi M., Suzuki S., Umezawa T.	The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.	Planta	242(3)	589-600	2015	BC7,_,CESA7,CEF1,BC6,_,4CL3,GH2,_,_,_,_,PAL1,_,_,_,_,_,ROMT9,_	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsGT43I, OsGT43B,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,XAX1, OsXAX1,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,gh2, CAD2, CAD, OsCAD2, GH2 ,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L,OsMYB86-L2,OsMYB86-L1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsMYB42/85, MYB42/85,OsMYB58/63-L,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63,OsMYB86,OsMYB52, OsMYB52/54,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,OsGT43A, GT43A
41975	25974367	Qin Y., Shen X., Wang N., Ding X.	Characterization of a novel cyclase-like gene family involved in controlling stress tolerance in rice.	J. Plant Physiol.	181	30-41	2015	SKIPA,DST,_,_,_,_	OsSKIPa, OsSKIP, SKIP,OsDST,OsCYL4, CYL4, OsCYL4a, OsCYL4b,OsCYL1, CYL1,OsCYL3, CYL3,OsCYL2, CYL2
41976	26067440	Xu K., Chen S., Li T., Ma X., Liang X., Ding X., Liu H., Luo L.	OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes.	BMC Plant Biol.	15	141	2015	RBBI2-1,GSTU5,_,_,_,GRAS23,_,_,1CYSPRXB	RBBI2-1,OsGSTU5,2-ODD8, Os2-ODD8, 2ODD8, Os2ODD8,,OsHIGD2, HIGD2,OsGRAS23, OsGRAS-23, GRAS-23,prx64,,Os1-Cys Prx B, 1-Cys Prx B, Os1-CysPrxB, 1-CysPrxB
41977	26040493	Huang Q.N., Shi Y.F., Zhang X.B., Song L.X., Feng B.H., Wang H.M., Xu X., Li X.H., Guo D., Wu J.L.	Single base substitution in OsCDC48 is responsible for premature senescence and death phenotype in rice.	J Integr Plant Biol			2015	CDC48E,PSD128	OsCDC48E, OsCDC48-2, CDC48-2,OsCDC48, CDC48, OsCDC48-1, CDC48-1
41978	26083148	Choi C., Hwang S.H., Fang I.R., Kwon S.I., Park S.R., Ahn I., Kim J.B., Hwang D.J.	Molecular characterization of Oryza sativa WRKY6, which binds to W-box-like element 1 of the Oryza sativa pathogenesis-related (PR) 10a promoter and confers reduced susceptibility to pathogens.	New Phytol.			2015	NH1,_,WRKY6,PR10A	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,ICS1, OsICS1, OsICS, ICS,OsWRKY6, WRKY-6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
41979	26083975	Xia K., Ou X., Tang H., Wang R., Wu P., Jia Y., Wei X., Xu X., Kang S.H., Kim S.K., Zhang M.	Rice microRNA osa-miR1848 targets the obtusifoliol 14alpha-demethylase gene OsCYP51G3 and mediates the biosynthesis of phytosterols and brassinosteroids during development and in response to stress.	New Phytol.			2015	CYP51G3,MIR1848,GIF1,qSW5,LK3	OsCYP51G3,miR1848, osa-miR1848, osa-MIR1848,gif1, CIN2, OsCIN2, OsGIF1,GW5, OsGW5,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
41980	26096057	Jing H., Yang X., Zhang J., Liu X., Zheng H., Dong G., Nian J., Feng J., Xia B., Qian Q., Li J., Zuo J.	Peptidyl-prolyl isomerization targets rice Aux/IAAs for proteasomal degradation during auxin signalling.	Nat Commun	6	7395	2015	LRT2,IAA13,_,IAA11	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsIAA13, OsIAA1, OsiIAA1,OsTIR1, TIR1, OsFbox248, Os_F0717,OsIAA11
41981	26259181	Li C., Hu Y., Huang R., Ma X., Wang Y., Liao T., Zhong P., Xiao F., Sun C., Xu Z., Deng X., Wang P.	Mutation of FdC2 gene encoding a ferredoxin-like protein with C-terminal extension causes yellow-green leaf phenotype in rice.	Plant Sci.	238	127-34	2015	HDY1,_,_,_,_	OsFdC2, FdC2, OsHDY1,OsFd3, Fd3,Fd1, OsFd1, ADI1,Fd, OsFd4, Fd4,OsFdC1, FdC1
41982	26085678	Qiao B., Zhang Q., Liu D., Wang H., Yin J., Wang R., He M., Cui M., Shang Z., Wang D., Zhu Z.	A calcium-binding protein, rice annexin OsANN1, enhances heat stress tolerance by modulating the production of H2O2.	J. Exp. Bot.			2015	CDPK24,ANN2	OsCDPK24, OsCPK24, OsCDPK14,OsANN2, OsANN1, ANN1
41983	26098425	Zhao X., Xu M., Wei R., Liu Y.	Expression of OsCAS (Calcium-Sensing Receptor) in an Arabidopsis Mutant Increases Drought Tolerance.	PLoS ONE	10(6)	e0131272	2015	STR11	OsStr11, OsCAS, Cas
41984	26082401	Guo M., Ruan W., Li C., Huang F., Zeng M., Liu Y., Yu Y., Ding X., Wu Y., Wu Z., Mao C., Yi K., Wu P., Mo X.	Integrative Comparison of the Role of the PHOSPHATE RESPONSE1 Subfamily in Phosphate Signaling and Homeostasis in Rice.	Plant Physiol.	168(4)	1762-76	2015	PHR2,PT2,IPS1,PHR3,PHR1,miR827	OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsIPS1, IPS1,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsPHR1,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b
41985	26149652	Xu Q., Ni H., Zhang J., Lan Y., Ren C., Zhou Y.	Whole-genome expression analysis of Rice black-streaked dwarf virus in different plant hosts and small brown planthopper.	Gene			2015		
41986	26200336	Su J., Hu C., Yan X., Jin Y., Chen Z., Guan Q., Wang Y., Zhong D., Jansson C., Wang F., Schn?rer A., Sun C.	Expression of barley SUSIBA2 transcription factor yields high-starch low-methane rice.	Nature	523(7562)	602-6	2015	SBE4,SBE1,AGPS2,SBE3,WX1,GBSSII,RSUS1,SSI,SUT5,ISA1,UGP1,WRKY87	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,GBSS2,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,OsSSI, SSS 1, SSS1, SS1,OsSUT5(t), OsSUT5Z, OsSUT5,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,Ugp1, OsUgp1, UGP2, UGP3,OsWRKY87, OsSUSIBA2-like
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41988	26147619	Wang Y., Xiong G., Hu J., Jiang L., Yu H., Xu J., Fang Y., Zeng L., Xu E., Xu J., Ye W., Meng X., Liu R., Chen H., Jing Y., Wang Y., Zhu X., Li J., Qian Q.	Copy number variation at the GL7 locus contributes to grain size diversity in rice.	Nat. Genet.	47(8)	944-8	2015	_,_,_,_	,GL7-S1,GL7-S2,GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7
41989	26147620	Wang S., Li S., Liu Q., Wu K., Zhang J., Wang S., Wang Y., Chen X., Zhang Y., Gao C., Wang F., Huang H., Fu X.	The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.	Nat. Genet.	47(8)	949-54	2015	GW8,_,_,_	SPL16, OsSPL16, SLP1, qGW8,GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7,OsTON1b, TON1b,OsTON2, TON2
41990	26176923	Yang S., Wang L., Huang J., Zhang X., Yuan Y., Chen J.Q., Hurst L.D., Tian D.	Parent-progeny sequencing indicates higher mutation rates in heterozygotes.	Nature	523(7561)	463-7	2015		
41991	26185232	DeFries R., Fanzo J., Remans R., Palm C., Wood S., Anderman T.L.	Global nutrition. Metrics for land-scarce agriculture.	Science	349(6245)	238-40	2015		
41992	26210810	Zhu X., Liang S., Yin J., Yuan C., Wang J., Li W., He M., Wang J., Chen W., Ma B., Wang Y., Qin P., Li S., Chen X.	The DnaJ OsDjA7/8 is essential for chloroplast development in rice (Oryza sativa).	Gene			2015	_,CAB2R,PSBA,CAB1R,PSAA,_	OsDjA7, OsDnaJ,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,PsaA, psaA, PsAA1,OsDjA8
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41994	26142104	Zhou C., Chen Y., Wu Z., Lu W., Han J., Wu P., Chen Y., Li M., Jiang H., Wu G.	Genome-wide analysis of the MYB gene family in physic nut (Jatropha curcas L.).	Gene			2015		
41995	26156223	Poursarebani N., Seidensticker T., Koppolu R., Trautewig C., Gawro?ski P., Bini F., Govind G., Rutten T., Sakuma S., Tagiri A., Wolde G.M., Youssef H.M., Battal A., Ciannamea S., Fusca T., Youssef H.M., Nussbaumer T., Pozzi C., B?rner A., Lundqvist U., Komatsuda T., Salvi S., Tuberosa R., Uauy C., Sreenivasulu N., Rossini L., Schnurbusch T.	The Genetic Basis of Composite Spike Form in Barley and "Miracle-Wheat".	Genetics			2015		
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41999	26193260	Huang L., Zhang H., Hong Y., Liu S., Li D., Song F.	Stress-Responsive Expression, Subcellular Localization and Protein-Protein Interactions of the rice metacaspase Family.	Int J Mol Sci	16(7)	16216-41	2015	MC3,_,MC2,MC7,_,MC8,MC5,_,_,_,MC1,MC6,MC4	OsMC3, OsSTA102,OsLOL1, OsSTA289, OsLSD1,OsMC2,OsMC7,OsLSD1, OsLOL1, OsLSD1.1, LSD1.1, LSD1,OsMC8,OsMC5,OsLSD2,OsLOL2,OsLSD3,OsMC1,OsMC6,OsMC4
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42002	26205956	Du W., Cheng J., Cheng Y., Wang L., He Y., Wang Z., Zhang H.	Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.	Plant Biol (Stuttg)			2015	SDR4,NCED1,qLTG-3-1(t),GA2OX1,VP1,NCED3,ABA8OX1,_,GH3-8	Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L ,OsNCED1, OsCCD4a, CCD4a,qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OsILR1,ILR1,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2
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42005	26148492	Azevedo G.C., Cheavegatti-Gianotto A., Negri B.F., Hufnagel B., E Silva Lda C., Magalhaes J.V., Garcia A.A., Lana U.G., de Sousa SM., Guimaraes C.T.	Multiple interval QTL mapping and searching for PSTOL1 homologs associated with root morphology, biomass accumulation and phosphorus content in maize seedlings under low-P.	BMC Plant Biol.	15	172	2015		
42006	26220694	Fan X., Feng H., Tan Y., Xu Y., Miao Q., Xu G.	A putative 6 trans-membrane nitrate transporter OsNRT1.1b plays a key role in rice under low nitrogen.	J Integr Plant Biol			2015	NRT1	OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 
42007	26143250	Cao H., Li X., Wang Z., Ding M., Sun Y., Dong F., Chen F., Liu L., Doughty J., Li Y., Liu Y.X.	histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.	Plant Physiol.	168(4)	1389-405	2015	CYP704B2,_,_,UDT1,OSC4,CYP703A3,EAT1,CP1,_,RAG,AP37 	OsCYP704B2,OsHUB1, HUB1, SIP20,OsMS2, MS2, OsDPW, DPW, DPW1,Udt1, bHLH164, OsUDT1, OsbHLH164 ,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,OsCYP703A3,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsCP1, Os CP1,OsHUB2, HUB2, FRRP1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsAP37
42008	26134707	Singh A.K., Kumar R., Tripathi A.K., Gupta B.K., Pareek A., Singla-Pareek SL.	Genome-wide investigation and expression analysis of Sodium/Calcium exchanger gene family in rice and Arabidopsis.	Rice (N Y)	8(1)	54	2015	CAX1A,CAX2,CDT1,CAX1B,CAX1C,CAX8,CAX3,_,CAX7,CCX4,CCX1,_,_,CCX3,_	OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2,OsCAX7, OsNCX12, NCX12, OsNaCa11exA ,OsCCX4, OsNCX15, NCX15,OsCCX1, OsNCX6, NCX6,CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3,OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1,OsCCX3, OsNCX11, NCX11,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1
42009	26193322	Mohanta T.K., Mohanta N., Bae H.	Identification and Expression Analysis of PIN-Like (PILS) Gene Family of Rice Treated with Auxin and Cytokinin.	Genes (Basel)	6(3)	622-40	2015	_,_,_,_,_,_,_	OsPILS6a, PILS6a,OsPILS7b, PILS7b,OsPILS6b, PILS6b,OsPILS2, PILS2,OsPILS1, PILS1,OsPILS7a, PILS7a,OsPILS5, PILS5
42010	26025521	Byun M.Y., Lee J., Cui L.H., Kang Y., Oh T.K., Park H., Lee H., Kim W.T.	Constitutive expression of DaCBF7, an Antarctic vascular plant Deschampsia antarctica CBF homolog, resulted in improved cold tolerance in transgenic rice plants.	Plant Sci.	236	61-74	2015	_,_,_,REM4.1,SIP2,_,_,DR8,_,LEA24,_,_,_	,,,OsREM4.1,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1,,,OsDR8, OsXNP, FOXRED1,,OsLEA24, WSI724,OsCPn60beta1, OsCPn60b1,,
42011	26133169	Yang Y.W., Chen H.C., Jen W.F., Liu L.Y., Chang M.C.	Comparative Transcriptome Analysis of Shoots and Roots of TNG67 and TCN1 Rice Seedlings under Cold Stress and Following Subsequent Recovery: Insights into Metabolic Pathways, Phytohormones, and Transcription Factors.	PLoS ONE	10(7)	e0131391	2015	IAA23,WRKY1,WRKY24,NAC6,WRKY53,_,RR4,WRKY71	OsIAA23,OsWRKY1, OsWRKY1v2,OsWRKY24,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsWRKY53, WRKY-53,HMGB,rr4, OsRR4, Rra3, OsRRA3,OsWRKY71, WRKY-71
42012	26140668	Yu C., Sun C., Shen C., Wang S., Liu F., Liu Y., Chen Y., Li C., Qian Q., Aryal B., Geisler M., Jiang de A., Qi Y.	The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza?sativa L.).	Plant J.	83(5)	818-30	2015	HMA5,GCC7,HMA6,HMA9,CYCB1;1,_	OsHMA8, osHMA5, HMA8,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3,OsHMA5, osHMA6, HMA5,OsHMA9 ,oshma9-1, oshma9-2, HMA9,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1
42013	26025522	Takano S., Matsuda S., Funabiki A., Furukawa J., Yamauchi T., Tokuji Y., Nakazono M., Shinohara Y., Takamure I., Kato K.	The rice RCN11 gene encodes beta1,2-xylosyltransferase and is required for plant responses to abiotic stresses and phytohormones.	Plant Sci.	236	75-88	2015	RR1,RR6,RR9	rr1, OsRR1, Rra9, OsRRA9,OsRR6, rr6, Rra6, OsRRA6,OsRR9, Rra1, OsRRA1, OsRR10, RR10
42014	26121094	Xu Y., Zong W., Hou X., Yao J., Liu H., Li X., Zhao Y., Xiong L.	OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice.	Plant J.	83(5)	806-17	2015	TLD1,IPT2,IPT7,YUCCA1,_,_,IPT4,YUCCA6,GH3-4,OSH43,YUCCA5,GH3-11,_,_,OSH15,GH3-8,IPT3,_,_,OSH1,YUCCA4,OSKN2,JAR1	OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,OsIPT2,OsIPT7,OsYUCCA1, OsYUC1,OsARID6, ARID6,OsARID3, ARID3, SIP5 ,OsIPT4,OsYUCCA6, OsYUC6,OsGH3-4, OsGH3.4, GH3.4,OsH43, H43,OsYUCCA5, OsYUC5, YUC5,OsGH3-11, OsGH3.11, GH3.11,OsARID4, ARID4,OsARID5, ARID5,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsIPT3,OsARID1, ARID1,OsSTA71, OsARID2, ARID2,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsYUCCA4, OsYUC4, YUC4,OsKn2, OsH71, HOS9, OSH71, OSH71/Oskn2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
42015	26187814	Hu J., Wang Y., Fang Y., Zeng L., Xu J., Yu H., Shi Z., Pan J., Zhang D., Kang S., Zhu L., Dong G., Guo L., Zeng D., Zhang G., Xie L., Xiong G., Li J., Qian Q.	A rare allele of GS2 enhances grain size and grain yield in rice.	Mol Plant			2015	GS2,MIR396C	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c
42016	26220952	Ueda Y., Siddique S., Frei M.	A novel gene OsORAP1 enhances cell death in ozone stress in rice (Oryza sativa L.).	Plant Physiol.			2015	MIR528,JAMYB,AAO5,WRKY45,_,AAO1,AAO2,TIFY10C,OG1,NH1	miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsJAmyb, JAmyb, OsJAMyb ,OsAAO5,OsWRKY45,OsORAP1, ORAP1, OzT9, AO, OsAAO4, AAO4,OsAAO1,OsAAO2, L-APX,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2
42017	26129988	H?ller S., Ueda Y., Wu L., Wang Y., Hajirezaei M.R., Ghaffari M.R., von Wir?n N., Frei M.	Ascorbate biosynthesis and its involvement in stress tolerance and plant development in rice (Oryza sativa L.).	Plant Mol. Biol.	88(6)	545-60	2015	_,_,_,_,MIOX	OsGME2, GME2,,OsGGP, GGP,OsGME1, GME1,OsMIOX
42018	26165755	Hong W., Qian D., Sun R., Jiang L., Wang Y., Wei C., Zhang Z., Li Y.	OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus.	Sci Rep	5	11324	2015	SHL2	shl2, SHL2, sh2, OsRDR6, RDR6
42019	26025528	Zhu N., Cheng S., Liu X., Du H., Dai M., Zhou D.X., Yang W., Zhao Y.	The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.	Plant Sci.	236	146-56	2015	_,LEA3-1,RAB16A,NHX1,SOS1,_,_,SLR1	OsMYB91, MYB91, OsRS2, RS2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsNHX1,OsSOS1, OsNHA1,P5CS2, OsP5CS2, OsALDH18B2, ALDH18B2 ,OsProT, ProT, OsProT2, ProT2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
42020	26150107	Liu X., Feng H., Huang D., Song M., Fan X., Xu G.	Two short sequences in OsNAR2.1 promoter are necessary for fully activating the nitrate induced gene expression in rice roots.	Sci Rep	5	11950	2015	NAR2.1	OsNAR2.1, OsNRT3.1A
42021	26251883	Akamatsu A., Uno K., Kato M., Wong H.L., Shimamoto K., Kawano Y.	New insights into the dimerization of small GTPase Rac/ROP guanine nucleotide exchange factors in rice.	Plant Signal Behav	10(7)	e1044702	2015	RAC1,_,ROPGEF7,ROPGEF5	OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,Os RopGEF7, OsRopGEF7, RopGEF7, OsRacGEF2,OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B
42022	26126957	Morita S., Yamashita Y., Fujiki M., Todaka R., Nishikawa Y., Hosoki A., Yabe C., Nakamura J., Kawamura K., Suwastika I.N., Sato M.H., Masumura T., Ogihara Y., Tanaka K., Satoh S.	Expression of a rice glutaredoxin in aleurone layers of developing and mature seeds: subcellular localization and possible functions in antioxidant defense.	Planta			2015	GRX	grx, OsGRX, OsGRX14, OsGrx9, OsGrxC2;2
42023	26230579	Bevilacqua C.B., Basu S., Pereira A., Tseng T.M., Zimmer P.D., Burgos N.R.	Analysis of Stress-Responsive Gene Expression in Cultivated and Weedy Rice Differing in Cold Stress Tolerance.	PLoS ONE	10(7)	e0132100	2015	_,_,_	OsNAC2,OsF-BOX28,OsMYB46
42024	26296966	Yang Y., Fu D., Zhu C., He Y., Zhang H., Liu T., Li X., Wu C.	The RING-Finger Ubiquitin Ligase HAF1 Mediates heading date 1 Degradation during Photoperiodic Flowering in Rice.	Plant Cell			2015	SE1,EF1,HD3A,HIP1,RFT1	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsHIP1, HAF1, OsHAF1,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
42025	26275424	Taguchi-Shiobara F., Ota T., Ebana K., Ookawa T., Yamasaki M., Tanabata T., Yamanouchi U., Wu J., Ono N., Nonoue Y., Nagata K., Fukuoka S., Hirabayashi H., Yamamoto T., Yano M.	Natural Variation in the flag leaf Morphology of Rice Due to a Mutation of the NARROW LEAF 1 Gene in Oryza sativa L.	Genetics			2015	NAL1	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4
42026	26283354	Liu L., Tong H., Xiao Y., Che R., Xu F., Hu B., Liang C., Chu J., Li J., Chu C.	Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(35)	11102-7	2015	BG1	OsaBG1, OsBG1
42027	26286535	Lloyd J.P., Seddon A.E., Moghe G.D., Simenc M.C., Shiu S.H.	Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.	Plant Cell			2015	_,SKIPA,VP1,_,_,_,ADL1,SHL2,ASB1,SHO1,WAF1,MRP13,_,SHL4,TATC,_,GELP112,_	MIT,OsSKIPa, OsSKIP, SKIP,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,,,,adl1,shl2, SHL2, sh2, OsRDR6, RDR6,OASB1, OsASbeta1, ASbeta1,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 ,waf1, waf1-1, waf1-2, HEN1,OsABCC13, OsMRP13, OsMRP5,OsPUB15, PUB15,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsTATC, OsTatC, TatC,OsRH36,OsGELP112, WDL1,OsVPS22
42028	26283388	Yamaji N., Sakurai G., Mitani-Ueno N., Ma J.F.	Orchestration of three transporters and distinct vascular structures in node for intervascular transfer of silicon in rice.	Proc. Natl. Acad. Sci. U.S.A.			2015	LSI6,LSI1,LSI2,_,_,LSI3,_	Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,Lsi2, SIET1, OsLsi2,SIET4,SIET5,Lsi3, OsLsi3, Lsi3/SIET2, SIET2,SIET3
42029	26290940	Gasselhuber B., Carpena X., Graf M.M., Pirker K.F., Nicolussi A., S?ndermann A., Hofbauer S., Zamocky M., Furtm?ller PG., Jakopitsch C., Oostenbrink C., Fita I., Obinger C.	Eukaryotic Catalase-Peroxidase: The Role of the Trp-Tyr-Met Adduct in Protein Stability, Substrate Accessibility, and Catalysis of Hydrogen Peroxide Dismutation.	Biochemistry			2015		
42030	26307379	Zhao Y., Cheng S., Song Y., Huang Y., Zhou S., Liu X., Zhou D.X.	The Interaction between Rice ERF3 and WOX11 Promotes crown root Development by Regulating Gene Expression Involved in Cytokinin Signaling.	Plant Cell			2015	RR3,RR1,CRL4,RR2,ERF3,WOX11,IAA5,IAA23,PLT8,IAA31,CRL1	OSRR3, OsRR3, rr3, Rra7, OsRRA7,rr1, OsRR1, Rra9, OsRRA9,OsGNOM1, GNOM1, CRL4/GNOM1,rr2, Osrr2, OsRR2, Rra10, OsRRA10,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsWOX11, Os WOX11, OsWOX12A,OsIAA5,OsIAA23,OsPLT8, CRL5, AP2/EREBP141, AP2/EREBP#141 ,OsIAA3, OsIAA31,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
42031	26287768	Tanabe S., Onodera H., Hara N., Ishii-Minami N., Day B., Fujisawa Y., Hagio T., Toki S., Shibuya N., Nishizawa Y., Minami E.	The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.	Biosci. Biotechnol. Biochem.		1-7	2015	CIGR2,HSFB1	OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1 
42032	26275661	Wang H., Meng J., Peng X., Tang X., Zhou P., Xiang J., Deng X.	Rice WRKY4 acts as a transcriptional activator mediating defense responses toward Rhizoctonia solani, the causing agent of rice sheath blight.	Plant Mol. Biol.			2015	PR10A,PR1A,WRKY4,PR1B,_	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsWRKY4, WRKY122, OsWRKY122,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR5, PR5
42033	26300907	Kim N., Moon S.J., Min M.K., Choi E.H., Kim J.A., Koh E.Y., Yoon I., Byun M.O., Yoo S.D., Kim B.G.	Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts.	Front Plant Sci	6	614	2015	BZIP46,_,SAPK9,_,SAPK2,_,_	ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsSAPK9,OsPP2C08, PP2C08, OsPP2C8, PP2C8, OsPP12,OsSAPK2,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3
42034	26318143	Wang F., Wang M., Liu Z., Shi Y., Han T., Ye Y., Gong N., Sun J., Zhu C.	Different responses of low grain-Cd-accumulating and high grain-Cd-accumulating rice cultivars to Cd stress.	Plant Physiol. Biochem.	96	261-269	2015	_	OsFWL5, FWL5, OsPcr1, PCR1, OsPCR1
42035	26283047	Gu B., Zhou T., Luo J., Liu H., Wang Y., Shangguan Y., Zhu J., Li Y., Sang T., Wang Z., Han B.	An-2 Encodes a Cytokinin Synthesis Enzyme That Regulates awn length and Grain Production in Rice.	Mol Plant			2015	LABA1,AN1	LOGL6, OsLOGL6, An-2,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1
42036	26276868	Byeon Y., Choi G.H., Lee H.Y., Back K.	Melatonin biosynthesis requires N-acetylserotonin methyltransferase activity of caffeic acid O-methyltransferase in rice.	J. Exp. Bot.			2015	ROMT9	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT
42037	26286751	Yung Y.L., Cheung M.Y., Miao R., Fong Y.H., Li K.P., Yu M.H., Chye M.L., Wong K.B., Lam H.M.	Site-Directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 on the Physiological Functions of the Rice GTPase-Activating Protein 1 (OsGAP1).	J. Biol. Chem.			2015	_,_	OsYchF1, YchF1, OsPM8ATP ,OsGAP1, GAP1
42038	26277722	Munir F., Hayashi S., Batley J., Naqvi S.M., Mahmood T.	Germin-like protein 2 gene promoter from rice is responsive to fungal pathogens in transgenic potato plants.	Funct. Integr. Genomics			2015	GLP8-7	OsGLP8-7, GER6, OsRGLP2, RGLP2
42039	25955387	Zhang H., Liu J., He F., Wang Z., Ning Y., Wang G.L.	OsHUB1 and OsHub2 interact with SPIN6 and form homo- and hetero-dimers in rice.	Plant Signal Behav	10(8)	e1039212	2015	_,_,RAC1,SPL11,_	OsHUB1, HUB1,OsHUB2, HUB2,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,spl11, spl11*, OsPUB11, PUB11,SPIN6, Spin6, SIP11 
42040	26290597	Liu G., Zhang K., Ai J., Su Y., Deng X., Hong Y., Wang X.	Patatin-related phospholipase A, pPLAIIIalpha, modulates the longitudinal growth of vegetative tissues and seeds in rice.	J. Exp. Bot.			2015	_,_,_,SLR1,_,BC6,_,_,BC7,SD1,GA20OX1,GID1,CESA7,CESA1,_,_,_,_,_,_,_,_,_,DEP3,GA2OX1,_,CESA8,_,_,_,_	OspPLAIIIbeta, pPLAIIIbeta,OspPLAIItheta, pPLAIItheta,OspPLAIIlambda, pPLAIIlambda,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OspPLAIIepsilon, pPLAIIepsilon,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OspPLAIIIzeta, pPLAIIIzeta,OspPLAIVbeta, pPLAIVbeta,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,gid1, OsGID1, Thl, Os GID1,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OspPLAIIgamma, pPLAIIgamma,OspPLAIIdelta, pPLAIIdelta,OspPLAIValpha, pPLAIValpha,OspPLAV, pPLAV,OspPLAIIkappa, pPLAIIkappa,OspPLAIIiota, pPLAIIiota,OspPLAIIzeta, pPLAIIzeta,OspPLAI, pPLAI ,OspPLAIIIgamma, pPLAIIIgamma,dep3, OspPLAIIIdelta, pPLAIIIdelta,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OspPLAIIIalpha, pPLAIIIalpha,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT,OspPLAIIIepsilon, pPLAIIIepsilon,OspPLAIIeta, pPLAIIeta,OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MATL
42041	26241499	Hua Y., Ekkhara W., Sansenya S., Srisomsap C., Roytrakul S., Saburi W., Takeda R., Matsuura H., Mori H., Ketudat Cairns JR.	Identification of rice Os4BGlu13 as a beta-glucosidase which hydrolyzes gibberellin A4 1-O-beta-d-glucosyl ester, in addition to tuberonic acid glucoside and salicylic acid derivative glucosides.	Arch. Biochem. Biophys.	583	36-46	2015	BGLU7,BGLU6,BGLU13,BGLU12	Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,Os3bglu6, Os3BGlu6, 3BGlu6,OsTAGG1, TAGG1, Os4BGlu13, 4BGlu13,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2
42042	26243209	Cheng C., Tarutani Y., Miyao A., Ito T., Yamazaki M., Sakai H., Fukai E., Hirochika H.	Loss of function mutations in the rice chromomethylase OsCMT3a cause a burst of transposition.	Plant J.			2015	_,MPING,CMT1,_,DASHENG,_,TOS19,_,CMT2,TOS17	LINE1-6_OS,mPing,OsCMT1, OsCMT3b,Osr13, Tos5 ,Dasheng,Osr4,Tos19, Lullaby,OsCMT2,OsCMT2, OsCMT3a, CMT3a,Tos17, Osr21, Tos17chr10, Tos17_Chr10, Tos17chr7, Tos17_Chr7
42043	25953146	Hori K., Nonoue Y., Ono N., Shibaya T., Ebana K., Matsubara K., Ogiso-Tanaka E., Tanabata T., Sugimoto K., Taguchi-Shiobara F., Yonemaru J., Mizobuchi R., Uga Y., Fukuda A., Ueda T., Yamamoto S., Yamanouchi U., Takai T., Ikka T., Kondo K., Hoshino T., Yamamoto E., Adachi S., Nagasaki H., Shomura A., Shimizu T., Kono I., Ito S., Mizubayashi T., Kitazawa N., Nagata K., Ando T., Fukuoka S., Yamamoto T., Yano M.	Genetic architecture of variation in heading date among Asian rice accessions.	BMC Plant Biol.	15	115	2015		
42044	26058146	Deng W.W., Sasamoto H., Ashihara H.	Effect of caffeine on the expression pattern of water-soluble proteins in rice (Oryza sativa) seedlings.	Nat Prod Commun	10(5)	733-6	2015		
42045	25935420	Shaar-Moshe L., H?bner S., Peleg Z.	Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.	BMC Plant Biol.	15	111	2015		
42046	26259169	Dametto A., Sperotto R.A., Adamski J.M., Blasi ?A., Cargnelutti D., de Oliveira LF., Ricachenevsky F.K., Fregonezi J.N., Mariath J.E., da Cruz RP., Margis R., Fett J.P.	cold tolerance in rice germinating seeds revealed by deep RNAseq analysis of contrasting indica genotypes.	Plant Sci.	238	1-12	2015		
42047	26025049	Mutuku J.M., Yoshida S., Shimizu T., Ichihashi Y., Wakatake T., Takahashi A., Seo M., Shirasu K.	The WRKY45-Dependent Signaling Pathway Is Required For Resistance against Striga hermonthica Parasitism.	Plant Physiol.	168(3)	1152-63	2015		
42048	26019258	Wang P., Menzies N.W., Lombi E., McKenna B.A., James S., Tang C., Kopittke P.M.	Synchrotron-based X-ray absorption near-edge spectroscopy imaging for laterally resolved speciation of selenium in fresh roots and leaves of wheat and rice.	J. Exp. Bot.	66(15)	4795-806	2015		
42049	26141895	Zhang S., Wang L., Ma F., Zhang X., Li Z., Li S., Jiang X.	Can arbuscular mycorrhiza and fertilizer management reduce phosphorus runoff from paddy fields?	J Environ Sci (China)	33	211-8	2015		
42050	25961557	Ji H., Ding Y., Liu X., Li L., Zhang D., Li Z., Sun J., Lashari M.S., Joseph S., Meng Y., Kuzyakov Y., Pan G.	Root-Derived Short-Chain Suberin Diacids from Rice and Rape Seed in a Paddy Soil under Rice Cultivar Treatments.	PLoS ONE	10(5)	e0127474	2015		
42051	25947970	Cui X.D., Wang Y.J., Hockmann K., Zhou D.M.	Effect of iron plaque on antimony uptake by rice (Oryza sativa L.).	Environ. Pollut.	204	133-40	2015		
42052	25938231	Zhang G.Y., Liu R.R., Zhang C.Q., Tang K.X., Sun M.F., Yan G.H., Liu Q.Q.	Manipulation of the rice L-galactose pathway: evaluation of the effects of transgene overexpression on ascorbate accumulation and abiotic stress tolerance.	PLoS ONE	10(5)	e0125870	2015		
42053	25983205	Ma J.F., Yamaji N.	A cooperative system of silicon transport in plants.	Trends Plant Sci.	20(7)	435-42	2015		
42054	26008792	Xie Z., Si W., Gao R., Zhang X., Yang S.	Evolutionary analysis of RB/Rpi-blb1 locus in the Solanaceae family.	Mol. Genet. Genomics			2015		
42055	26029330	Jin B., Zhou X., Jiang B., Gu Z., Zhang P., Qian Q., Chen X., Ma B.	Transcriptome profiling of the spl5 mutant reveals that spl5 has a negative role in the biosynthesis of serotonin for rice disease resistance.	Rice (N Y)	8	18	2015		
42056	26042132	Singh A.P., Dixit G., Mishra S., Dwivedi S., Tiwari M., Mallick S., Pandey V., Trivedi P.K., Chakrabarty D., Tripathi R.D.	Salicylic acid modulates arsenic toxicity by reducing its root to shoot translocation in rice (Oryza sativa L.).	Front Plant Sci	6	340	2015		
42057	25589060	Wang Z., Xu Y., Chen T., Zhang H., Yang J., Zhang J.	Abscisic acid and the key enzymes and genes in sucrose-to-starch conversion in rice spikelets in response to soil drying during grain filling.	Planta	241(5)	1091-107	2015		
42058	26072143	Du B., Wei Z., Wang Z., Wang X., Peng X., Du B., Chen R., Zhu L., He G.	Phloem-exudate proteome analysis of response to insect brown plant-hopper in rice.	J. Plant Physiol.	183	13-22	2015		
42059	26022255	Rebolledo M.C., Dingkuhn M., Courtois B., Gibon Y., Cl?ment-Vidal A., Cruz D.F., Duitama J., Lorieux M., Luquet D.	Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping.	J. Exp. Bot.	66(18)	5555-66	2015		
42060	25973946	Delwaide A.C., Nalley L.L., Dixon B.L., Danforth D.M., Nayga R.M., Van Loo EJ., Verbeke W.	Revisiting GMOs: Are There Differences in European Consumers' Acceptance and Valuation for Cisgenically vs Transgenically Bred Rice?	PLoS ONE	10(5)	e0126060	2015		
42061	25972274	Zhang M., Shan Y., Kochian L., Strasser R.J., Chen G.	Photochemical properties in flag leaves of a super-high-yielding hybrid rice and a traditional hybrid rice (Oryza sativa L.) probed by chlorophyll a fluorescence transient.	Photosyn. Res.			2015		
42062	25951083	Fan X., Guo Q., Xu P., Gong Y., Shu H., Yang Y., Ni W., Zhang X., Shen X.	Transcriptome-wide identification of salt-responsive members of the WRKY gene family in Gossypium aridum.	PLoS ONE	10(5)	e0126148	2015		
42063	25995326	Yang C., Ma B., He S.J., Xiong Q., Duan K.X., Yin C.C., Chen H., Lu X., Chen S.Y., Zhang J.S.	MHZ6/OsEIL1 and OsEIL2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect salt tolerance in Rice.	Plant Physiol.			2015	HKT1,EIN2,_,EIL2	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,EIL1, OsEIL1, MHZ6/OsEIL1, MHZ6,OsEIL2
42064	25979979	Alter S., Bader K.C., Spannagl M., Wang Y., Bauer E., Sch?n CC., Mayer K.F.	DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species.	Database (Oxford)	2015	bav046	2015		
42065	25941326	Sano N., Ono H., Murata K., Yamada T., Hirasawa T., Kanekatsu M.	Accumulation of long-lived mRNAs associated with germination in embryos during seed development of rice.	J. Exp. Bot.	66(13)	4035-46	2015		
42066	25781542	Gutsche N., Thurow C., Zachgo S., Gatz C.	Plant-specific CC-type glutaredoxins: functions in developmental processes and stress responses.	Biol. Chem.	396(5)	495-509	2015		
42067	25993896	Liang Y., Zhang D.Y., Ouyang S., Xie J., Wu Q., Wang Z., Cui Y., Lu P., Zhang D., Liu Z.J., Zhu J., Chen Y.X., Zhang Y., Luo M.C., Dvorak J., Huo N., Sun Q., Gu Y.Q., Liu Z.	Dynamic evolution of resistance gene analogs in the orthologous genomic regions of powdery mildew resistance gene MlIW170 in Triticum dicoccoides and Aegilops tauschii.	Theor. Appl. Genet.	128(8)	1617-29	2015		
42068	26052332	Thakur S., Singh P.K., Das A., Rathour R., Variar M., Prashanthi S.K., Singh A.K., Singh U.D., Chand D., Singh N.K., Sharma T.R.	Extensive sequence variation in rice blast resistance gene Pi54 makes it broad spectrum in nature.	Front Plant Sci	6	345	2015		
42069	25988582	Eom J.S., Chen L.Q., Sosso D., Julius B.T., Lin I.W., Qu X.Q., Braun D.M., Frommer W.B.	SWEETs, transporters for intracellular and intercellular sugar translocation.	Curr. Opin. Plant Biol.	25	53-62	2015		
42070	26052337	Vijayan J., Devanna B.N., Singh N.K., Sharma T.R.	Cloning and functional validation of early inducible Magnaporthe oryzae responsive CYP76M7 promoter from rice.	Front Plant Sci	6	371	2015		
42071	26054243	Pradhan S.K., Nayak D.K., Mohanty S., Behera L., Barik S.R., Pandit E., Lenka S., Anandan A.	Pyramiding of three bacterial blight resistance genes for broad-spectrum resistance in deepwater rice variety, Jalmagna.	Rice (N Y)	8(1)	51	2015		
42072	26025543	Jung H., Lee D.K., Choi Y.D., Kim J.K.	OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth.	Plant Sci.	236	304-12	2015		
42073	25937463	Lu M., Sun Q.P., Zhang D.F., Wang T.Y., Pan J.B.	Identification of 7 stress-related NAC transcription factor members in maize (Zea mays L.) and characterization of the expression pattern of these genes.	Biochem. Biophys. Res. Commun.	462(2)	144-50	2015		
42074	25979995	Crofts N., Abe N., Oitome N.F., Matsushima R., Hayashi M., Tetlow I.J., Emes M.J., Nakamura Y., Fujita N.	Amylopectin biosynthetic enzymes from developing rice seed form enzymatically active protein complexes.	J. Exp. Bot.	66(15)	4469-82	2015		
42075	26024808	Yang G.D., Xie W.Y., Zhu X., Huang Y., Yang X.J., Qiu Z.Q., Lv Z.M., Wang W.N., Lin W.X.	Effect of arsenite-oxidizing bacterium B. laterosporus on arsenite toxicity and arsenic translocation in rice seedlings.	Ecotoxicol. Environ. Saf.	120	7-12	2015		
42076	26001084	Zhang Y., Wang Z., Li L., Zhou Q., Xiao Y., Wei X., Zhou M.	Short-term complete submergence of rice at the tillering stage increases yield.	PLoS ONE	10(5)	e0127982	2015		
42077	26074936	Sun W., Xu X.H., Wu X., Wang Y., Lu X., Sun H., Xie X.	Genome-wide identification of microRNAs and their targets in wild type and phyB mutant provides a key link between microRNAs and the phyB-mediated light signaling pathway in rice.	Front Plant Sci	6	372	2015		
42078	26010143	Jung W.Y., Kim S.G., Kim H.K., Lee J.S., Han S.I., Choe S., Son B.G.	Effect of GABA Extract of Black Sticky Rice with giant embryo on Alcohol-Related Indices After Acute Alcohol Intake in Social Drinkers.	Alcohol. Clin. Exp. Res.	39(7)	1212-8	2015		
42079	26001124	Azizi P., Rafii M.Y., Mahmood M., Abdullah S.N., Hanafi M.M., Nejat N., Latif M.A., Sahebi M.	Differential Gene Expression Reflects Morphological Characteristics and Physiological Processes in Rice Immunity against Blast Pathogen Magnaporthe oryzae.	PLoS ONE	10(5)	e0126188	2015		
42080	25957646	Lu P., Qin J., Wang G., Wang L., Wang Z., Wu Q., Xie J., Liang Y., Wang Y., Zhang D., Sun Q., Liu Z.	Comparative fine mapping of the Wax 1 (W1) locus in hexaploid wheat.	Theor. Appl. Genet.	128(8)	1595-603	2015		
42081	25963517	Gayen D., Ali N., Sarkar S.N., Datta S.K., Datta K.	Down-regulation of lipoxygenase gene reduces degradation of carotenoids of golden rice during storage.	Planta	242(1)	353-63	2015		
42082	25968601	Rong Tan L., Chen Lu Y., Jing Zhang J., Luo F., Yang H.	A collection of cytochrome P450 monooxygenase genes involved in modification and detoxification of herbicide atrazine in rice (Oryza sativa) plants.	Ecotoxicol. Environ. Saf.	119	25-34	2015		
42083	25991036	Yan S., Wang Z., Liu Y., Li W., Wu F., Lin X., Meng Z.	Functional architecture of two exclusively late stage pollen-specific promoters in rice (Oryza sativa L.).	Plant Mol. Biol.	88(4-5)	415-28	2015		
42084	26125743	Wu J.D., Jiang C.P., Zhu H.S., Jiang H.Y., Cheng B.J., Zhu S.W.	Cloning and functional analysis of the promoter of a maize starch synthase III gene (ZmDULL1).	Genet. Mol. Res.	14(2)	5468-79	2015		
42085	26012494	Zhang J., Lu Z., Dai W., Song X., Peng Y., Valverde B.E., Qiang S.	Cytoplasmic-genetic male sterility gene provides direct evidence for some hybrid rice recently evolving into weedy rice.	Sci Rep	5	10591	2015		
42086	25985202	Wu H., Lv H., Li L., Liu J., Mu S., Li X., Gao J.	Genome-Wide Analysis of the AP2/ERF Transcription Factors Family and the Expression Patterns of DREB Genes in Moso Bamboo (Phyllostachys edulis).	PLoS ONE	10(5)	e0126657	2015		
42087	25948705	Zhu B., Yang Y., Li R., Fu D., Wen L., Luo Y., Zhu H.	RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening.	J. Exp. Bot.	66(15)	4483-95	2015		
42088	25956882	Simkin A.J., McAusland L., Headland L.R., Lawson T., Raines C.A.	Multigene manipulation of photosynthetic carbon assimilation increases CO2 fixation and biomass yield in tobacco.	J. Exp. Bot.	66(13)	4075-90	2015		
42089	26002971	Lori M., van Verk MC., Hander T., Schatowitz H., Klauser D., Flury P., Gehring C.A., Boller T., Bartels S.	Evolutionary divergence of the plant elicitor peptides (Peps) and their receptors: interfamily incompatibility of perception but compatibility of downstream signalling.	J. Exp. Bot.	66(17)	5315-25	2015		
42090	26020828	Song Z., Zhao Y., Zhou X., Wu G., Zhang Y., Qian G., Liu F.	Identification and Characterization of Two Novel DSF-Controlled Virulence-Associated Genes Within the nodB-rhgB Locus of Xanthomonas oryzae pv. oryzicola Rs105.	Phytopathology	105(5)	588-96	2015		
42091	25957114	Ye C., Tenorio F.A., Redo?a ED., Morales-Cortezano PS., Cabrega G.A., Jagadish K.S., Gregorio G.B.	Fine-mapping and validating qHTSF4.1 to increase spikelet fertility under heat stress at flowering in rice.	Theor. Appl. Genet.	128(8)	1507-17	2015		
42092	25403331	Huang Y., Li M.Y., Wang F., Xu Z.S., Huang W., Wang G.L., Ma J., Xiong A.S.	Heat shock factors in carrot: genome-wide identification, classification, and expression profiles response to abiotic stress.	Mol. Biol. Rep.	42(5)	893-905	2015		
42093	25932633	Ferreira L.J., Azevedo V., Maroco J., Oliveira M.M., Santos A.P.	Salt Tolerant and Sensitive Rice Varieties Display Differential Methylome Flexibility under Salt Stress.	PLoS ONE	10(5)	e0124060	2015		
42094	25982586	Molla K.A., Debnath A.B., Ganie S.A., Mondal T.K.	Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.).	BMC Plant Biol.	15	122	2015		
42095	25993302	Bai B., Wu J., Sheng W.T., Zhou B., Zhou L.J., Zhuang W., Yao D.P., Deng Q.Y.	Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress.	Int J Mol Sci	16(5)	11398-416	2015		
42096	26314143	Wang D., Li X., Wang D.C., Rao W., Du G.H., Yang J., Hua D.L.	[Influence of Sulfur on the Formation of Fe-Mn Plaque on Root and Uptake of Cd by Rice (Oryza sativa L.)].	Huan Jing Ke Xue	36(5)	1877-87	2015		
42097	26032497	Wu L., Taohua Z., Gui W., Xu L., Li J., Ding Y.	Five pectinase gene expressions highly responding to heat stress in rice floral organs revealed by RNA-seq analysis.	Biochem. Biophys. Res. Commun.	463(3)	407-13	2015		
42098	26022253	Lou Q., Chen L., Mei H., Wei H., Feng F., Wang P., Xia H., Li T., Luo L.	Quantitative trait locus mapping of deep rooting by linkage and association analysis in rice.	J. Exp. Bot.	66(15)	4749-57	2015		
42099	26007238	Wang W., Zhao P., Zhou X.M., Xiong H.X., Sun M.X.	Genome-wide identification and characterization of cystatin family genes in rice (Oryza sativa L.).	Plant Cell Rep.	34(9)	1579-92	2015		
42100	25976104	Wang J., Pan C., Wang Y., Ye L., Wu J., Chen L., Zou T., Lu G.	Genome-wide identification of MAPK, MAPKK, and MAPKKK gene families and transcriptional profiling analysis during development and stress response in cucumber.	BMC Genomics	16	386	2015		
42101	25969556	Delhaize E., Rathjen T.M., Cavanagh C.R.	The genetics of rhizosheath size in a multiparent mapping population of wheat.	J. Exp. Bot.	66(15)	4527-36	2015		
42102	26024443	Kitayama M., Hoover H., Middleton S., Kao C.C.	Brome mosaic virus Infection of Rice Results in Decreased Accumulation of RNA1.	Mol. Plant Microbe Interact.	28(5)	626-32	2015		
42103	26074937	De Leon TB., Linscombe S., Gregorio G., Subudhi P.K.	Genetic variation in Southern USA rice genotypes for seedling salinity tolerance.	Front Plant Sci	6	374	2015		
42104	26089150	Wang L., Hu W., Sun J., Liang X., Yang X., Wei S., Wang X., Zhou Y., Xiao Q., Yang G., He G.	Genome-wide analysis of SnRK gene family in Brachypodium distachyon and functional characterization of BdSnRK2.9.	Plant Sci.	237	33-45	2015		
42105	26058145	Kato-Noguchi H., Kitajima S.	Momilactone sensitive proteins in Arabidopsis thaliana.	Nat Prod Commun	10(5)	729-32	2015		
42106	26068787	Rathinasabapathi P., Purushothaman N., Ramprasad V.L., Parani M.	Whole genome sequencing and analysis of Swarna, a widely cultivated indica rice variety with low glycemic index.	Sci Rep	5	11303	2015		
42107	26116860	Liu H., Liu H., Zhou L., Zhang Z., Zhang X., Wang M., Li H., Lin Z.	Parallel Domestication of the Heading Date 1 Gene in Cereals.	Mol. Biol. Evol.			2015		
42108	26095078	Shu K., Meng Y.J., Shuai H.W., Liu W.G., Du J.B., Liu J., Yang W.Y.	Dormancy and germination: How does the crop seed decide?	Plant Biol (Stuttg)			2015		
42109	26052925	S?nchez MA., Cid P., Navarrete H., Aguirre C., Chac?n G., Salazar E., Prieto H.	outcrossing potential between 11 important genetically modified crops and the Chilean vascular flora.	Plant Biotechnol. J.			2015		
42110	26046301	Chen G., Hu Q., Luo L.E., Yang T., Zhang S., Hu Y., Yu L., Xu G.	Rice potassium transporter OsHAK1 is essential for maintaining potassium-mediated growth and functions in salt tolerance over low and high potassium concentration ranges.	Plant Cell Environ.			2015		
42111	26111882	Singh N., Jayaswal P.K., Panda K., Mandal P., Kumar V., Singh B., Mishra S., Singh Y., Singh R., Rai V., Gupta A., Raj Sharma T., Singh N.K.	Single-copy gene based 50?K SNP chip for genetic studies and molecular breeding in rice.	Sci Rep	5	11600	2015		
42112	26123290	Ben-Saad R., Meynard D., Ben-Romdhane W., Mieulet D., Verdeil J.L., Al-Doss A., Guiderdoni E., Hassairi A.	The promoter of the AlSAP gene from the halophyte grass Aeluropus littoralis directs a stress-inducible expression pattern in transgenic rice plants.	Plant Cell Rep.			2015		
42113	26044828	Pearce S., Huttly A.K., Prosser I.M., Li Y.D., Vaughan S.P., Gallova B., Patil A., Coghill J.A., Dubcovsky J., Hedden P., Phillips A.L.	Heterologous expression and transcript analysis of gibberellin biosynthetic genes of grasses reveals novel functionality in the GA3ox family.	BMC Plant Biol.	15	130	2015		
42114	26076132	Lin C.P., Ko C.Y., Kuo C.I., Liu M.S., Schafleitner R., Chen L.F.	Transcriptional Slippage and RNA Editing Increase the Diversity of Transcripts in Chloroplasts: Insight from Deep Sequencing of Vigna radiata Genome and Transcriptome.	PLoS ONE	10(6)	e0129396	2015		
42115	26175615	Zhu H., Liu Z., Fu X., Dai Z., Wang S., Zhang G., Zeng R., Liu G.	Detection and characterization of epistasis between QTLs on plant height in rice using single segment substitution lines.	Breed. Sci.	65(3)	192-200	2015		
42116	25457483	Hasnat M.A., Pervin M., Cha K.M., Kim S.K., Lim B.O.	Anti-inflammatory activity on mice of extract of Ganoderma lucidum grown on rice via modulation of MAPK and NF-kappaB pathways.	Phytochemistry	114	125-36	2015		
42117	26141377	Athwal N.S., Alagurajan J., Sturms R., Fulton D.B., Andreotti A.H., Hargrove M.S.	Electron self-exchange in hemoglobins revealed by deutero-hemin substitution.	J. Inorg. Biochem.			2015		
42118	26036614	Yamauchi T., Shiono K., Nagano M., Fukazawa A., Ando M., Takamure I., Mori H., Nishizawa N.K., Kawai-Yamada M., Tsutsumi N., Kato K., Nakazono M.	Ethylene Biosynthesis is Promoted by Very-Long-Chain Fatty Acids during Lysigenous Aerenchyma Formation in Rice Roots.	Plant Physiol.			2015		
42119	26031196	Qi X., Liu Y., Vigueira C.C., Young N.D., Caicedo A.L., Jia Y., Gealy D.R., Olsen K.M.	More than one way to evolve a weed: parallel evolution of US weedy rice through independent genetic mechanisms.	Mol. Ecol.	24(13)	3329-44	2015		
42120	26082161	Li E., Wu A.C., Li J., Liu Q., Gilbert R.G.	Improved understanding of rice amylose biosynthesis from advanced starch structural characterization.	Rice (N Y)	8(1)	55	2015		
42121	26110263	Shi P., Tang L., Wang L., Sun T., Liu L., Cao W., Zhu Y.	Post-Heading Heat Stress in Rice of South China during 1981-2010.	PLoS ONE	10(6)	e0130642	2015		
42122	26030358	Wu Y., Xiao N., Yu L., Pan C., Li Y., Zhang X., Liu G., Dai Z., Pan X., Li A.	Combination Patterns of Major R Genes Determine the Level of Resistance to the M. oryzae in Rice (Oryza sativa L.).	PLoS ONE	10(6)	e0126130	2015		
42123	26047696	Wang W., Liu B., Xu M., Jamil M., Wang G.	ABA-induced CCCH tandem zinc finger protein OsC3H47 decreases ABA sensitivity and promotes drought tolerance in Oryza sativa.	Biochem. Biophys. Res. Commun.	464(1)	33-7	2015		
42124	26034131	Zhang B., Wang M., Tang D., Li Y., Xu M., Gu M., Cheng Z., Yu H.	XRCC3 is essential for proper double-strand break repair and homologous recombination in rice meiosis.	J. Exp. Bot.			2015		
42125	26109439	Zhang S., Wang L., Wu W., He L., Yang X., Pan Q.	Function and evolution of Magnaporthe oryzae avirulence gene AvrPib responding to the rice blast resistance gene Pib.	Sci Rep	5	11642	2015		
42126	26111541	Campbell M.T., Knecht A.C., Berger B., Brien C.J., Wang D., Walia H.	Integrating Image-Based Phenomics and Association Analysis to Dissect the Genetic Architecture of Temporal Salinity Responses in Rice.	Plant Physiol.	168(4)	1476-89	2015		
42127	26259187	Zhang L., Mao D., Xing F., Bai X., Zhao H., Yao W., Li G., Xie W., Xing Y.	Loss of function of OsMADS3 via the insertion of a novel retrotransposon leads to recessive male sterility in rice (Oryza sativa).	Plant Sci.	238	188-97	2015		
42128	26096631	Zhao J., Chen H., Ren D., Tang H., Qiu R., Feng J., Long Y., Niu B., Chen D., Zhong T., Liu Y.G., Guo J.	Genetic interactions between diverged alleles of Early heading date 1 (Ehd1) and heading date 3a (Hd3a)/ RICE FLOWERING LOCUS T1 (RFT1) control differential heading and contribute to regional adaptation in RICE (Oryza sativa).	New Phytol.			2015		
42129	26102588	Chen X., Zhu L., Xin L., Du K., Ran X., Cui X., Xiang Q., Zhang H., Xu P., Wu X.	Rice stripe1-2 and stripe1-3 Mutants Encoding the Small Subunit of Ribonucleotide Reductase Are Temperature Sensitive and Are Required for Chlorophyll Biosynthesis.	PLoS ONE	10(6)	e0130172	2015		
42130	26083713	Li R., Zhang J., Li J., Zhou G., Wang Q., Bian W., Erb M., Lou Y.	Prioritizing plant defence over growth through WRKY regulation facilitates infestation by non-target herbivores.	Elife	4	e04805	2015		
42131	26105598	Gao X., Zhang X., Lan H., Huang J., Wang J., Zhang H.	The additive effects of GS3 and qGL3 on rice grain length regulation revealed by genetic and transcriptome comparisons.	BMC Plant Biol.	15	156	2015		
42132	26086245	Subudhi P.K., De Leon T., Singh P.K., Parco A., Cohn M.A., Sasaki T.	A Chromosome Segment Substitution Library of Weedy Rice for Genetic Dissection of Complex Agronomic and Domestication Traits.	PLoS ONE	10(6)	e0130650	2015		
42133	26076351	Jaiswal V., Gahlaut V., Mathur S., Agarwal P., Khandelwal M.K., Khurana J.P., Tyagi A.K., Balyan H.S., Gupta P.K.	Identification of Novel SNP in Promoter Sequence of TaGW2-6A Associated with grain weight and Other Agronomic Traits in Wheat (Triticum aestivum L.).	PLoS ONE	10(6)	e0129400	2015		
42134	26081948	Kim S.M., Suh J.P., Qin Y., Noh T.H., Reinke R.F., Jena K.K.	Identification and fine-mapping of a new resistance gene, Xa40, conferring resistance to bacterial blight races in rice (Oryza sativa L.).	Theor. Appl. Genet.			2015	XA40	
42135	26125886	Cai J., Zhang M., Guo L.B., Li X.M., Bao J.S., Ma L.Y.	QTLs for rice flag leaf traits in doubled haploid populations in different environments.	Genet. Mol. Res.	14(2)	6786-95	2015		
42136	26071212	Mahjoubi H., Ebel C., Hanin M.	Molecular and functional characterization of the durum wheat TdRL1, a member of the conserved Poaceae RSS1-like family that exhibits features of intrinsically disordered proteins and confers stress tolerance in yeast.	Funct. Integr. Genomics			2015		
42137	26174670	Challam C., Ghosh T., Rai M., Tyagi W.	Allele mining across DREB1A and DREB1B in diverse rice genotypes suggest a highly conserved pathway inducible by low temperature.	J. Genet.	94(2)	231-8	2015		
42138	26035591	Jisha V., Dampanaboina L., Vadassery J., Mith?fer A., Kappara S., Ramanan R.	Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.	PLoS ONE	10(6)	e0127831	2015		
42139	26112675	Hou Y., Qiu J., Tong X., Wei X., Nallamilli B.R., Wu W., Huang S., Zhang J.	A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight.	BMC Plant Biol.	15	163	2015		
42140	26165499	Yang J., Zhang X., Huang Y., Feng Y., Li Y.	OsCBL1 Modulates Lateral Root Elongation in Rice via Affecting Endogenous Indole-3-Acetic Acid Biosynthesis.	J Genet Genomics	42(6)	331-4	2015		
42141	26033328	Huang Z., Lin J., Cheng Z., Xu M., Guo M., Huang X., Yang Z., Zheng J.	Production of oleanane-type sapogenin in transgenic rice via expression of beta-amyrin synthase gene from Panax japonicus C. A. Mey.	BMC Biotechnol.	15	45	2015		
42142	26071275	Han L., Chen J., Mace E.S., Liu Y., Zhu M., Yuyama N., Jordan D.R., Cai H.	Fine mapping of qGW1, a major QTL for grain weight in sorghum.	Theor. Appl. Genet.	128(9)	1813-25	2015		
42143	26082787	Liu S., Hu Q., Luo S., Li Q., Yang X., Wang X., Wang S.	Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.	Front Plant Sci	6	388	2015		
42144	26045464	Obertello M., Shrivastava S., Katari M.S., Coruzzi G.M.	Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.	Plant Physiol.	168(4)	1830-43	2015		
42145	26082998	Jardim-Messeder D., Caverzan A., Rauber R., de Souza Ferreira E., Margis-Pinheiro M., Galina A.	Succinate dehydrogenase (mitochondrial complex II) is a source of reactive oxygen species in plants and regulates development and stress responses.	New Phytol.			2015		
42146	26084707	Htwe N.M., Luo Z.Q., Jin L.G., Nadon B., Wang K.J., Qiu L.J.	Functional marker development of miR1511-InDel and allelic diversity within the genus Glycine.	BMC Genomics	16	467	2015		
42147	26054324	Wang C., Duan W., Riquicho A.R., Jing Z., Liu T., Hou X., Li Y.	Genome-wide survey and expression analysis of the PUB family in Chinese cabbage (Brassica rapa ssp. pekinesis).	Mol. Genet. Genomics			2015		
42148	26089199	Xu R.F., Li H., Qin R.Y., Li J., Qiu C.H., Yang Y.C., Ma H., Li L., Wei P.C., Yang J.B.	Generation of inheritable and "transgene clean" targeted genome-modified rice in later generations using the CRISPR/Cas9 system.	Sci Rep	5	11491	2015		
42149	26089830	Xu W., Meng Y., Surana P., Fuerst G., Nettleton D., Wise R.P.	The knottin-like Blufensin family regulates genes involved in nuclear import and the secretory pathway in barley-powdery mildew interactions.	Front Plant Sci	6	409	2015		
42150	26073760	Mostofa M.G., Hossain M.A., Fujita M., Tran L.S.	Physiological and biochemical mechanisms associated with trehalose-induced copper-stress tolerance in rice.	Sci Rep	5	11433	2015		
42151	26063739	Liu M.J., Seddon A.E., Tsai Z.T., Major I.T., Floer M., Howe G.A., Shiu S.H.	Determinants of nucleosome positioning and their influence on plant gene expression.	Genome Res.	25(8)	1182-95	2015		
42152	26069451	Raorane M.L., Pabuayon I.M., Miro B., Kalladan R., Reza-Hajirezai M., Oane R.H., Kumar A., Sreenivasulu N., Henry A., Kohli A.	Variation in primary metabolites in parental and near-isogenic lines of the QTL qDTY 12.1 : altered roots and flag leaves but similar spikelets of rice under drought.	Mol. Breed.	35(6)	138			
42153	26175616	Shinada H., Yamamoto T., Yamamoto E., Hori K., Hirayama Y., Maekawa T., Kiuchi H., Sato H., Sato T.	Quantitative trait loci for whiteness of cooked rice detected in improved rice cultivars in Hokkaido.	Breed. Sci.	65(3)	201-7	2015		
42154	26259185	Sakai H., Iwai T., Matsubara C., Usui Y., Okamura M., Yatou O., Terada Y., Aoki N., Nishida S., Yoshida K.T.	A decrease in phytic acid content substantially affects the distribution of mineral elements within rice seeds.	Plant Sci.	238	170-7	2015		
42155	26136752	Peng X., Qin Z., Zhang G., Guo Y., Huang J.	Integration of the proteome and transcriptome reveals multiple levels of gene regulation in the rice dl2 mutant.	Front Plant Sci	6	351	2015		
42156	26092704	Koc I., Filiz E., Tombuloglu H.	Comparative analysis of plant lycopene cyclases.	Comput Biol Chem	58	81-92	2015		
42157	26098557	Tamaki H., Reguera M., Abdel-Tawab YM., Takebayashi Y., Kasahara H., Blumwald E.	Targeting Hormone-Related Pathways to Improve grain yield in Rice: A Chemical Approach.	PLoS ONE	10(6)	e0131213	2015		
42158	26035336	Li M., Yin X., Sakata K., Yang P., Komatsu S.	Proteomic Analysis of Phosphoproteins in the Rice Nucleus During the Early Stage of Seed Germination.	J. Proteome Res.	14(7)	2884-96	2015		
42159	26174673	Li L., He X., Zhang H., Wang Z., Sun C., Mou T., Li X., Zhang Y., Hu Z.	Genomewide mapping reveals a combination of different genetic effects causing the genetic basis of heterosis in two elite rice hybrids.	J. Genet.	94(2)	261-70	2015		
42160	26133242	Lee H.J., Jo Y.M., Lee J.Y., Lim S.H., Kim Y.M.	Lack of Globulin Synthesis during Seed Development Alters Accumulation of Seed Storage Proteins in Rice.	Int J Mol Sci	16(7)	14717-36	2015		
42161	26095454	Li W., Liu Y., Wang J., He M., Zhou X., Yang C., Yuan C., Wang J., Chern M., Yin J., Chen W., Ma B., Wang Y., Qin P., Li S., Ronald P., Chen X.	The durably resistant rice cultivar Digu activates defence gene expression before the full maturation of Magnaporthe oryzae appressorium.	Mol. Plant Pathol.			2015		
42162	26082402	Lam P.Y., Liu H., Lo C.	Completion of Tricin Biosynthesis Pathway in Rice: Cytochrome P450 75B4 Is a Unique Chrysoeriol 5'-Hydroxylase.	Plant Physiol.	168(4)	1527-36	2015	ROMT9,F3'H,CYP75A11,CYP93G1,CYP75B4	COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,OsF3'H, OsCYP75B3, CYP75B3,OsCYP75A11,OsCYP93G1, OsFNSII, FNSII,OsCYP75B4, OsC5'H, C5'H 
42163	26058362	Gu R., Chen F., Liu B., Wang X., Liu J., Li P., Pan Q., Pace J., Soomro A.A., L?bberstedt T., Mi G., Yuan L.	Comprehensive phenotypic analysis and quantitative trait locus identification for grain mineral concentration, content, and yield in maize (Zea mays L.).	Theor. Appl. Genet.	128(9)	1777-89	2015		
42164	26061689	Golestan Hashemi FS., Rafii M.Y., Ismail M.R., Mohamed M.T., Rahim H.A., Latif M.A., Aslani F.	Application of an Effective Statistical Technique for an Accurate and Powerful Mining of Quantitative Trait Loci for Rice Aroma Trait.	PLoS ONE	10(6)	e0129069	2015		
42165	26030903	Liu Q., Qin J., Li T., Liu E., Fan D., Edzesi W.M., Liu J., Jiang J., Liu X., Xiao L., Liu L., Hong D.	Fine Mapping and Candidate Gene Analysis of qSTL3, a stigma length-Conditioning Locus in Rice (Oryza sativa L.).	PLoS ONE	10(6)	e0127938	2015		
42166	26081459	Manimaran P., Raghurami Reddy M., Bhaskar Rao T., Mangrauthia S.K., Sundaram R.M., Balachandran S.M.	Identification of cis-elements and evaluation of upstream regulatory region of a rice anther-specific gene, OSIPP3, conferring pollen-specific expression in Oryza sativa (L.) ssp. indica.	Plant Reproduction			2015	_	OSIPP3
42167	26123085	Krishnamurthy P., Kim J.A., Jeong M.J., Kang C.H., Lee S.I.	Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes.	Mol. Genet. Genomics			2015		
42168	26091498	Bernardes N.E., Takeda A.A., Dreyer T.R., Freitas F.Z., Bertolini M.C., Fontes M.R.	Structure of Importin-alpha from a Filamentous Fungus in Complex with a Classical Nuclear Localization Signal.	PLoS ONE	10(6)	e0128687	2015		
42169	26053267	Yuan S., Li Y., Peng S.	Leaf Lateral Asymmetry in Morphological and Physiological Traits of Rice Plant.	PLoS ONE	10(6)	e0129832	2015		
42170	26175622	Yonemaru J., Choi S.H., Sakai H., Ando T., Shomura A., Yano M., Wu J., Fukuoka S.	Genome-wide indel markers shared by diverse Asian rice cultivars compared to Japanese rice cultivar 'Koshihikari'.	Breed. Sci.	65(3)	249-56	2015		
42171	26191068	Bhati K.K., Sharma S., Aggarwal S., Kaur M., Shukla V., Kaur J., Mantri S., Pandey A.K.	Genome-wide identification and expression characterization of ABCC-MRP transporters in hexaploid wheat.	Front Plant Sci	6	488	2015		
42172	26220807	Zheng X.M., Feng L., Wang J., Qiao W., Zhang L., Cheng Y., Yang Q.	Nonfunctional alleles of long-day suppressor genes independently regulate flowering time.	J Integr Plant Biol			2015		
42173	26222686	Shaw R., Kundu S.	Metabolic Plasticity and Inter-Compartmental Interactions in Rice Metabolism: An Analysis from Reaction Deletion Study.	PLoS ONE	10(7)	e0133899	2015		
42174	26176782	Wu J., Zhang Z., Zhang Q., Liu Y., Zhu B., Cao J., Li Z., Han L., Jia J., Zhao G., Sun X.	Generation of Wheat Transcription Factor FOX Rice Lines and Systematic Screening for Salt and Osmotic Stress Tolerance.	PLoS ONE	10(7)	e0132314	2015		
42175	26251886	Kurotani K.I., Hattori T., Takeda S.	Overexpression of a CYP94 family gene CYP94C2b increases internode length and plant height in rice.	Plant Signal Behav	10(7)	e1046667	2015		
42176	26206233	Qin J., Ma X., Yi Z., Tang Z., Meng Y.	A transcriptome-wide study on the microRNA- and the Argonaute 1-enriched small RNA-mediated regulatory networks involved in plant leaf senescence.	Plant Biol (Stuttg)			2015		
42177	26291919	Porcel R., Redondo-G?mez S., Mateos-Naranjo E., Aroca R., Garcia R., Ruiz-Lozano JM.	Arbuscular mycorrhizal symbiosis ameliorates the optimum quantum yield of photosystem II and reduces non-photochemical quenching in rice plants subjected to salt stress.	J. Plant Physiol.	185	75-83	2015		
42178	26263516	Choi M.J., Park Y.R., Park S.J., Kang H.	Stress-responsive expression patterns and functional characterization of cold shock domain proteins in cabbage (Brassica rapa) under abiotic stress conditions.	Plant Physiol. Biochem.	96	132-140	2015		
42179	26175353	Zhang D.P., Zhou Y., Yin J.F., Yan X.J., Lin S., Xu W.F., Balu?ka F., Wang Y.P., Xia Y.J., Liang G.H., Liang J.S.	Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation.	J. Exp. Bot.			2015		
42180	26025535	Zhang L., Gu L., Ringler P., Smith S., Rushton P.J., Shen Q.J.	Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.	Plant Sci.	236	214-22	2015		
42181	26138891	Jiang Y., Yang H., Quan S., Liu Y., Shen P., Yang L.	Development of certified matrix-based reference material of genetically modified rice event TT51-1 for real-time PCR quantification.	Anal Bioanal Chem	407(22)	6731-9	2015		
42182	26197316	Pham N.T., Kim J.G., Jung S.	Differential Antioxidant Responses and Perturbed Porphyrin Biosynthesis after Exposure to Oxyfluorfen and Methyl Viologen in Oryza sativa.	Int J Mol Sci	16(7)	16529-44	2015		
42183	26135744	Zhang Y., Liu Y., Zhang J., Guo Y., Ma E.	Molecular Cloning and mRNA Expression of Heat Shock Protein Genes and Their Response to Cadmium Stress in the Grasshopper Oxya chinensis.	PLoS ONE	10(7)	e0131244	2015		
42184	26133688	Whitehouse K.J., Hay F.R., Ellis R.H.	Increases in the longevity of desiccation-phase developing rice seeds: response to high-temperature drying depends on harvest moisture content.	Ann. Bot.	116(2)	247-59	2015		
42185	26183952	Neto L.B., Arenhart R.A., de Oliveira LF., de Lima JC., Bodanese-Zanettini MH., Margis R., Margis-Pinheiro M.	ASR5 is involved in the regulation of miRNA expression in rice.	Plant Cell Rep.			2015		
42186	26161553	Xu Q., Zheng T.Q., Hu X., Cheng L.R., Xu J.L., Shi Y.M., Li Z.K.	Examining Two Sets of Introgression Lines in Rice (Oryza sativa L.) Reveals Favorable Alleles that Improve Grain Zn and Fe Concentrations.	PLoS ONE	10(7)	e0131846	2015		
42187	26147403	Zhang J., Zhou X., Yan W., Zhang Z., Lu L., Han Z., Zhao H., Liu H., Song P., Hu Y., Shen G., He Q., Guo S., Gao G., Wang G., Xing Y.	Combinations of the Ghd7, Ghd8 and Hd1 genes largely define the ecogeographical adaptation and yield potential of cultivated rice.	New Phytol.			2015		
42188	26141567	Atluri S., Rampersad S.N., Bonen L.	Retention of functional genes for S19 ribosomal protein in both the mitochondrion and nucleus for over 60 million years.	Mol. Genet. Genomics			2015		
42189	26202548	Ishimaru T., Ida M., Hirose S., Shimamura S., Masumura T., Nishizawa N.K., Nakazono M., Kondo M.	Laser microdissection-based gene expression analysis in the aleurone layer and starchy endosperm of developing rice caryopses in the early storage phase.	Rice (N Y)	8(1)	57	2015		
42190	26154950	Xu W., Xie L., Ye Z., Gao W., Yao Y., Chen M., Qin J., Ying Y.	Discrimination of Transgenic Rice containing the Cry1Ab protein using Terahertz Spectroscopy and Chemometrics.	Sci Rep	5	11115	2015		
42191	26141566	Urso S., Desiderio F., Biselli C., Bagnaresi P., Crispino L., Piffanelli P., Abbruscato P., Assenza F., Guarnieri G., Cattivelli L., Val? G.	Genetic analysis of durable resistance to Magnaporthe oryzae in the rice accession Gigante Vercelli identified two blast resistance loci.	Mol. Genet. Genomics			2015		
42192	26134138	Tian X.J., Long Y., Wang J., Zhang J.W., Wang Y.Y., Li W.M., Peng Y.F., Yuan Q.H., Pei X.W.	De novo Transcriptome Assembly of Common Wild Rice (Oryza rufipogon Griff.) and Discovery of Drought-Response Genes in Root Tissue Based on Transcriptomic Data.	PLoS ONE	10(7)	e0131455	2015		
42193	26176552	Marcotuli I., Houston K., Waugh R., Fincher G.B., Burton R.A., Blanco A., Gadaleta A.	Genome Wide Association Mapping for Arabinoxylan Content in a Collection of Tetraploid Wheats.	PLoS ONE	10(7)	e0132787	2015		
42194	26310142	Wen C., Xi L., Gao B., Wang K., Lv S., Kou Y., Ma N., Zhao L.	Roles of DgD14 in regulation of shoot branching in chrysanthemum (Dendranthema grandiflorum 'Jinba').	Plant Physiol. Biochem.	96	241-253	2015		
42195	26172549	Woo H.J., Qin Y., Park S.Y., Park S.K., Cho Y.G., Shin K.S., Lim M.H., Cho H.S.	Development of Selectable Marker-Free Transgenic Rice Plants with Enhanced Seed Tocopherol Content through FLP/FRT-Mediated Spontaneous Auto-Excision.	PLoS ONE	10(7)	e0132667	2015		
42196	26136269	Wang Y., Cao L., Zhang Y., Cao C., Liu F., Huang F., Qiu Y., Li R., Lou X.	Map-based cloning and characterization of BPH29, a B3 domain-containing recessive gene conferring brown planthopper resistance in rice.	J. Exp. Bot.			2015	BPH29	Bph29
42197	26197925	Zhang B., Liu X., Xu W., Chang J., Li A., Mao X., Zhang X., Jing R.	Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.	Sci Rep	5	12211	2015		
42198	26177065	Warren J.G., Kasun G.W., Leonard T., Kirkpatrick B.C.	A Phage Display Selected Peptide Inhibitor of Agrobacterium vitis Polygalacturonase.	Mol. Plant Pathol.			2015		
42199	26129955	Yang C., Ma S., Lee I., Kim J., Liu S.	Saline-induced changes of epicuticular waxy layer on the Puccinellia tenuiflora and Oryza sativa leave surfaces.	Biol. Res.	48	33	2015		
42200	26187409	Duan D., Zhang H.	A single SNP in NRT1.1B has a major impact on nitrogen use efficiency in rice.	Sci China Life Sci	58(8)	827-8	2015		
42201	26143254	Nishizawa-Yokoi A., Nonaka S., Osakabe K., Saika H., Toki S.	A universal positive-negative selection system for gene targeting in plants combining an antibiotic resistance gene and its antisense RNA.	Plant Physiol.			2015		
42202	26142419	Chen Q., Xie Q., Gao J., Wang W., Sun B., Liu B., Zhu H., Peng H., Zhao H., Liu C., Wang J., Zhang J., Zhang G., Zhang Z.	Characterization of Rolled and Erect Leaf 1 in regulating leave morphology in rice.	J. Exp. Bot.			2015	REL1,_,BRD1,D2,_,BZR1,BU1,_,DLT,DWARF4,D11,D61	OsREL1,OsEXPLA1, EXPLA1, RIP3,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,RAVL1, RAVL ,OsBZR1, Os BZR1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
42203	26258135	Tuhina-Khatun M., Hanafi M.M., Rafii Yusop M., Wong M.Y., Salleh F.M., Ferdous J.	Genetic Variation, Heritability, and Diversity Analysis of Upland Rice (Oryza sativa L.) Genotypes Based on Quantitative Traits.	Biomed Res Int	2015	290861	2015		
42204	26177332	Phukan U.J., Mishra S., Shukla R.K.	Waterlogging and submergence stress: affects and acclimation.	Crit. Rev. Biotechnol.		1-11	2015		
42205	26162429	Kir G., Ye H., Nelissen H., Neelakandan A.K., Kusnandar A.S., Luo A., Inz? D., Sylvester A., Yin Y., Becraft P.W.	RNAi knockdown of BRI1 in maize (Zea mays) reveals novel functions for brassinosteroid signaling in controlling plant architecture.	Plant Physiol.			2015		
42206	26224802	Yuan S., Li Z., Li D., Yuan N., Hu Q., Luo H.	Constitutive expression of Osa-miR528 alters plant development and enhances tolerance to salinity stress and nitrogen starvation in creeping bentgrass (Agrostis stolonifera L.).	Plant Physiol.			2015		
42207	26134858	Li D.A., Walker E., Francki M.G.	Identification of a member of the catalase multigene family on wheat chromosome 7A associated with flour b* colour and biological significance of allelic variation.	Mol. Genet. Genomics			2015		
42208	26198258	Petti C., Hirano K., Stork J., DeBolt S.	Mapping of a cellulose deficient mutant named dwarf1-1 in Sorghum bicolor to the Green Revolution gene GA20-oxidase reveals a regulatory association between gibberellin and cellulose biosynthesis.	Plant Physiol.			2015		
42209	26184504	Peng H., Chen Z., Fang Z., Zhou J., Xia Z., Gao L., Chen L., Li L., Li T., Zhai W., Zhang W.	Rice Xa21 primed genes and pathways that are critical for combating bacterial blight infection.	Sci Rep	5	12165	2015		
42210	26224365	Zhipeng Z., Wang Z., Lv Q., Shi J., Zhong Y., Wu P., Mao C.	SPX proteins regulate Pi homeostasis and signaling in different subcellular level.	Plant Signal Behav		0	2015		
42211	26165969	Dwivedi S.L., Britt A.B., Tripathi L., Sharma S., Upadhyaya H.D., Ortiz R.	Haploids: Constraints and opportunities in plant breeding.	Biotechnol. Adv.	33(6 Pt 1)	812-29	2015		
42212	26187026	Shi G., Zhang Z., Friesen T.L., Bansal U., Cloutier S., Wicker T., Rasmussen J.B., Faris J.D.	Marker development, saturation mapping, and high-resolution mapping of the Septoria nodorum blotch susceptibility gene Snn3-B1 in wheat.	Mol. Genet. Genomics			2015		
42213	26184180	Mou S., Shi L., Lin W., Liu Y., Shen L., Guan D., He S.	Over-Expression of Rice CBS Domain Containing Protein, OsCBSX3, Confers Rice Resistance to Magnaporthe oryzae Inoculation.	Int J Mol Sci	16(7)	15903-17	2015		
42214	26202549	Kwon C.T., Kim S.H., Kim D., Paek N.C.	The Rice Floral Repressor Early flowering1 Affects spikelet fertility By Modulating Gibberellin Signaling.	Rice (N Y)	8(1)	58	2015		
42215	26169392	Shen Y., Zhao Z., Ma H., Bian X., Yu Y., Yu X., Chen H., Liu L., Zhang W., Jiang L., Zhou J., Tao D., Wan J.	Fine mapping of S37, a locus responsible for pollen and embryo sac sterility in hybrids between Oryza sativa L. and O. glaberrima Steud.	Plant Cell Rep.			2015		
42216	26230730	Wang S., Chen W., Xiao W., Yang C., Xin Y., Qiu J., Hu W., Ying W., Fu Y., Tong J., Hu G., Chen Z., Fang X., Yu H., Lai W., Ruan S., Ma H.	Differential Proteomic Analysis Using iTRAQ Reveals Alterations in Hull Development in Rice (Oryza sativa L.).	PLoS ONE	10(7)	e0133696	2015		
42217	26217366	Cao J., Li X., Lv Y., Ding L.	Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays.	Front Plant Sci	6	515	2015		
42218	26147209	Gemmecker S., Schaub P., Koschmieder J., Brausemann A., Drepper F., Rodriguez-Franco M., Ghisla S., Warscheid B., Einsle O., Beyer P.	Phytoene Desaturase from Oryza sativa: Oligomeric Assembly, Membrane Association and Preliminary 3D-Analysis.	PLoS ONE	10(7)	e0131717	2015		
42219	26039357	Li S.	The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development.	Plant Signal Behav	10(7)	e1044192	2015		
42220	26183036	Su J., Wang W., Han J., Chen S., Wang C., Zeng L., Feng A., Yang J., Zhou B., Zhu X.	Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.	Theor. Appl. Genet.			2015		
42221	26284084	Zhang J., Wu L.S., Fan W., Zhang X.L., Jia H.X., Li Y., Yin Y.F., Hu J.J., Lu M.Z.	Proteomic analysis and candidate allergenic proteins in Populus deltoides CL. "2KEN8" mature pollen.	Front Plant Sci	6	548	2015		
42222	26136263	Wen L., Fukuda M., Sunada M., Ishino S., Ishino Y., Okita T.W., Ogawa M., Ueda T., Kumamaru T.	guanine nucleotide exchange factor 2 for Rab5 proteins coordinated with GLUP6/GEF regulates the intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm.	J. Exp. Bot.			2015	_,GLUP4,GLUP6,RAB5-GEF2	OsRab5A1, OsRab5b, Rab5b,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,Rab5-GEF2, OsRab5-GEF2, Rab5GEF2, OsRab5GEF2
42223	26162098	Xu J.L., Wang Y., Zhang F., Wu Y., Zheng T.Q., Wang Y.H., Zhao X.Q., Cui Y.R., Chen K., Zhang Q., Lin H.X., Li J.Y., Li Z.K.	SS1 (NAL1)- and SS2-Mediated Genetic Networks Underlying Source-Sink and Yield Traits in Rice (Oryza sativa L.).	PLoS ONE	10(7)	e0132060	2015		
42224	26138548	Yamori W., Kondo E., Sugiura D., Terashima I., Suzuki Y., Makino A.	Enhanced leaf photosynthesis as a target to increase grain yield: Insights from transgenic rice lines with variable Rieske FeS protein content in the Cytochrome b6 /f complex.	Plant Cell Environ.			2015		
42225	26228872	Zhu C., Xu X., Wang D., Zhu J., Liu G.	An indica rice genotype showed a similar yield enhancement to that of hybrid rice under free air carbon dioxide enrichment.	Sci Rep	5	12719	2015		
42226	26194356	Copetti D., Zhang J., El Baidouri M., Gao D., Wang J., Barghini E., Cossu R.M., Angelova A., Maldonado L CE., Roffler S., Ohyanagi H., Wicker T., Fan C., Zuccolo A., Chen M., Costa de Oliveira A., Han B., Henry R., Hsing Y.I., Kurata N., Wang W., Jackson S.A., Panaud O., Wing R.A.	RiTE database: a resource database for genus-wide rice genomics and evolutionary biology.	BMC Genomics	16	538	2015		
42227	26226878	Grondin A., Mauleon R., Vadez V., Henry A.	Root aquaporins contribute to whole plant water fluxes under drought stress in rice (Oryza sativa L.).	Plant Cell Environ.			2015		
42228	26040787	Wang J., Qi M., Liu J., Zhang Y.	CARMO: a comprehensive annotation platform for functional exploration of rice multi-omics data.	Plant J.	83(2)	359-74	2015		
42229	26218318	Bommert P., Schnittger A.	Where Steroids Meet the Cell Cycle in Architecture.	Dev. Cell	34(2)	131-2	2015		
42230	26208642	Glaubitz U., Erban A., Kopka J., Hincha D.K., Zuther E.	High night temperature strongly impacts TCA cycle, amino acid and polyamine biosynthetic pathways in rice in a sensitivity-dependent manner.	J. Exp. Bot.			2015		
42231	26284087	Forlani G., Bertazzini M., Zarattini M., Funck D., Ruszkowski M., Nocek B.	Functional properties and structural characterization of rice delta(1)-pyrroline-5-carboxylate reductase.	Front Plant Sci	6	565	2015		
42232	26206756	Prince S.J., Beena R., Gomez S.M., Senthivel S., Babu R.C.	Mapping Consistent Rice (Oryza sativa L.) Yield QTLs under Drought Stress in Target Rainfed Environments.	Rice (N Y)	8(1)	53	2015		
42233	26214462	Zai W.S., Miao L.X., Xiong Z.L., Zhang H.L., Ma Y.R., Li Y.L., Chen Y.B., Ye S.G.	Comprehensive identification and expression analysis of Hsp90s gene family in Solanum lycopersicum.	Genet. Mol. Res.	14(3)	7811-20	2015		
42234	26143253	Zhang T., Zhang W., Jiang J.	Genome-Wide Nucleosome Occupancy and Positioning and Their Impact on Gene Expression and Evolution in Plants.	Plant Physiol.	168(4)	1406-16	2015		
42235	26145151	Xing M.Q., Zhang Y.J., Zhou S.R., Hu W.Y., Wu X.T., Ye Y.J., Wu X.X., Xiao Y.P., Li X., Xue H.W.	Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development.	Plant Physiol.	168(4)	1417-32	2015		
42236	26025517	Liu K., Liu L.L., Ren Y.L., Wang Z.Q., Zhou K.N., Liu X., Wang D., Zheng M., Cheng Z.J., Lin Q.B., Wang J.L., Wu F.Q., Zhang X., Guo X.P., Wang C.M., Zhai H.Q., Jiang L., Wan J.M.	Dwarf and tiller-enhancing 1 regulates growth and development by influencing boron uptake in boron limited conditions in rice.	Plant Sci.	236	18-28	2015		
42237	26190148	Sun S., Chen D., Li X., Qiao S., Shi C., Li C., Shen H., Wang X.	Brassinosteroid Signaling Regulates Leaf Erectness in Oryza sativa via the Control of a Specific U-Type Cyclin and Cell Proliferation.	Dev. Cell	34(2)	220-8	2015		
42238	26149854	Lin S., Song Q., Tao H., Wang W., Wan W., Huang J., Xu C., Chebii V., Kitony J., Que S., Harrison A., He H.	Rice_Phospho 1.0: a new rice-specific SVM predictor for protein phosphorylation sites.	Sci Rep	5	11940	2015		
42239	26233709	Kumar M.S., Ali K., Dahuja A., Tyagi A.	Role of phytosterols in drought stress tolerance in rice.	Plant Physiol. Biochem.	96	83-89	2015		
42240	26095647	Zhao L., Tan L., Zhu Z., Xiao L., Xie D., Sun C.	PAY1 improves plant architecture and enhances grain yield in rice.	Plant J.	83(3)	528-36	2015	PAY1	
42241	26196146	Secco D., Wang C., Shou H., Schultz M.D., Chiarenza S., Nussaume L., Ecker J.R., Whelan J., Lister R.	Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements.	Elife	4		2015		
42242	26133732	Yin C., Li H., Li S., Xu L., Zhao Z., Wang J.	Genetic dissection on rice grain shape by the two-dimensional image analysis in one japonica?~?indica population consisting of recombinant inbred lines.	Theor. Appl. Genet.			2015		
42243	26206757	Takehisa H., Sato Y., Antonio B., Nagamura Y.	Coexpression Network Analysis of Macronutrient Deficiency Response Genes in Rice.	Rice (N Y)	8(1)	59	2015		
42244	26198760	Zhou T., Du L., Wang L., Wang Y., Gao C., Lan Y., Sun F., Fan Y., Wang G., Zhou Y.	Genetic analysis and molecular mapping of QTLs for resistance to rice black-streaked dwarf disease in rice.	Sci Rep	5	10509	2015		
42245	26139575	Xu J., Zhang L., Yang D.L., Li Q., He Z.	Thymidine kinases share a conserved function for nucleotide salvage and play an essential role in Arabidopsis thaliana growth and development.	New Phytol.			2015		
42246	26121931	Mishra R.C., Grover A.	ClpB/Hsp100 proteins and heat stress tolerance in plants.	Crit. Rev. Biotechnol.		1-13	2015		
42247	26152574	Matthus E., Wu L.B., Ueda Y., H?ller S., Becker M., Frei M.	Loci, genes, and mechanisms associated with tolerance to ferrous iron toxicity in rice (Oryza sativa L.).	Theor. Appl. Genet.			2015		
42248	26303982	Chamam A., Wisniewski-Dy? F., Comte G., Bertrand C., Prigent-Combaret C.	Differential responses of Oryza sativa secondary metabolism to biotic interactions with cooperative, commensal and phytopathogenic bacteria.	Planta			2015		
42249	26243616	Bai J., Zhu X., Wang Q., Zhang J., Chen H., Dong G., Zhu L., Zheng H., Xie Q., Nian J., Chen F., Fu Y., Qian Q., Zuo J.	Rice TUTOU1 Encodes a SCAR-like Protein that Is Important for Actin Organization and Panicle Development.	Plant Physiol.			2015	_,_,ES1,_	OsSCAR2, SCAR2, OsSCAR3, SCAR3,OsSCAR3, SCAR3, OsSCAR2, SCAR2,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1,OsSCAR4, SCAR4
42250	26252898	Jamsheer K M., Mannully C.T., Gopan N., Laxmi A.	Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence.	PLoS ONE	10(8)	e0134328	2015		
42251	26257333	Harrison P.J., Newgas S.A., Descombes F., Shepherd S.A., Thompson A.J., Bugg T.D.	Biochemical characterization and selective inhibition of beta-carotene cis-trans isomerase D27 and carotenoid cleavage dioxygenase CCD8 on the strigolactone biosynthetic pathway.	FEBS J.			2015		
42252	26248667	Kakkar A., Nizampatnam N.R., Kondreddy A., Pradhan B.B., Chatterjee S.	Xanthomonas campestris cell-cell signalling molecule DSF (diffusible signal factor) elicits innate immunity in plants and is suppressed by the exopolysaccharide xanthan.	J. Exp. Bot.			2015		
42253	26318216	Dong L., Wang Q., Manik S.M., Song Y., Shi S., Su Y., Liu G., Liu H.	Nicotiana sylvestris calcineurin B-like protein NsylCBL10 enhances salt tolerance in transgenic Arabidopsis.	Plant Cell Rep.			2015		
42254	26243630	Bonnot C., Pinson B., Cl?ment M., Bernillon S., Chiarenza S., Kanno S., Kobayashi N., Delannoy E., Nakanishi T.M., Nussaume L., Desnos T.	A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.	New Phytol.			2015		
42255	26304198	Maqbool A., Saitoh H., Franceschetti M., Stevenson C., Uemura A., Kanzaki H., Kamoun S., Terauchi R., Banfield M.J.	Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor.	Elife	4		2015		
42256	26241330	Kerk D., Silver D., Uhrig R.G., Moorhead G.B.	"PP2C7s", Genes Most Highly Elaborated in Photosynthetic Organisms, Reveal the Bacterial Origin and Stepwise Evolution of PPM/PP2C Protein Phosphatases.	PLoS ONE	10(8)	e0132863	2015		
42257	26282053	Liu J., Deng M., Guo H., Raihan S., Luo J., Xu Y., Dong X., Yan J.	Maize orthologs of rice GS5 and their trans-regulator are associated with kernel development.	J Integr Plant Biol			2015		
42258	26309725	Hartmann M., Gas-Pascual E., Hemmerlin A., Rohmer M., Bach T.J.	Development of an image-based screening system for inhibitors of the plastidial MEP pathway and of protein geranylgeranylation.	F1000Res	4	14	2015		
42259	26297139	Ishikawa T., Aki T., Yanagisawa S., Uchimiya H., Kawai-Yamada M.	Overexpression of Bax inhibitor-1 links plasma membrane microdomain proteins to stress.	Plant Physiol.			2015		
42260	26319557	Wang W., Huang F., Qin Q., Zhao X., Li Z., Fu B.	Comparative analysis of DNA methylation changes in two rice genotypes under salt stress and subsequent recovery.	Biochem. Biophys. Res. Commun.			2015		
42261	26321658	Pradhan S.K., Barik S.R., Sahoo J., Pandit E., Nayak D.K., Pani D.R., Anandan A.	Comparison of Sub1 markers and their combinations for submergence tolerance and analysis of adaptation strategies of rice in rainfed lowland ecology.	C. R. Biol.			2015		
42262	26242818	Shew A.M., Nalley L.L., Danforth D.M., Dixon B.L., Nayga R.M., Delwaide A.C., Valent B.	Are all GMOs the same? Consumer acceptance of cisgenic rice in India.	Plant Biotechnol. J.			2015		
42263	26284908	Wang X., Jia M.H., Ghai P., Lee F.N., Jia Y.	Genome wide Association of Rice Blast disease resistance and Yield Related Components of Rice.	Mol. Plant Microbe Interact.			2015		
42264	26318142	Takayama S., Hashimoto K., Kokubu E., Taniguchi M., Tajima K., Ochiai A., Saitoh E., Saito A., Ishihara K., Kato T.	Inhibitory effects of a novel cationic dodecapeptide [CL(14-25)] derived from cyanate lyase of rice on endotoxic activities of LPSs from Escherichia coli and periodontopathic Aggregatibacter actinomycetemcomitans.	Microb. Pathog.			2015		
42265	26243619	Rao Y., Yang Y., Xu J., Li X., Leng Y., Dai L., Huang L., Shao G., Ren D., Hu J., Guo L., Pan J., Zeng D.	EARLY SENESCENCE 1 Encodes a SCAR-like Protein2 that Affects Water Loss in Rice.	Plant Physiol.			2015	CKX4,ERF42,ERF117,_,_,ES1	OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsERF#117, OsERF117, AP2/EREBP#150, AP2/EREBP150, OsABI4,OsSDD1, SDD1, OsSub26, SUB26,OsTMM, TMM,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1
42266	26277261	Numa H., Yamaguchi K., Shigenobu S., Habu Y.	Gene Body CG and CHG Methylation and Suppression of Centromeric CHH Methylation are Mediated by DECREASE IN DNA METHYLATION1 in Rice.	Mol Plant			2015		
42267	26243626	Dixit S., Grondin A., Lee C.R., Henry A., Olds T.M., Kumar A.	Understanding rice adaptation to varying agro-ecosystems: trait interactions and quantitative trait loci.	BMC Genet.	16	86	2015		
42268	26276867	Wang S.H., Lim J.H., Kim S.S., Cho S.H., Yoo S.C., Koh H.J., Sakuraba Y., Paek N.C.	Mutation of SPOTTED LEAF3 (spl3) impairs abscisic acid-responsive signalling and delays leaf senescence in rice.	J. Exp. Bot.			2015		
42269	26293787	Vemireddy L.R., Noor S., Satyavathi V.V., Srividhya A., Kaliappan A., Parimala S., Bharathi P.M., Deborah D.A., Rao K.V., Shobharani N., Siddiq E.A., Nagaraju J.	Discovery and mapping of genomic regions governing economically important traits of Basmati rice.	BMC Plant Biol.	15	207	2015		
42270	26043067	Chen J., Gao H., Zheng X.M., Jin M., Weng J.F., Ma J., Ren Y., Zhou K., Wang Q., Wang J., Wang J.L., Zhang X., Cheng Z., Wu C., Wang H., Wan J.M.	An evolutionarily conserved gene, FUWA, plays a role in determining panicle architecture, grain shape and grain weight in rice.	Plant J.	83(3)	427-38	2015	_	FUWA, OsFUWA
42271	26317412	Jang S., Choi S.C., Li H.Y., An G., Schmelzer E.	Functional Characterization of Phalaenopsis aphrodite Flowering Genes PaFT1 and PaFD.	PLoS ONE	10(8)	e0134987	2015		
42272	26319531	Ganie S.A., Dey N., Mondal T.K.	Promoter methylation regulates the abundance of osa-miR393a in contrasting rice genotypes under salinity stress.	Funct. Integr. Genomics			2015		
42273	26302743	Huang W., Xian Z., Kang X., Tang N., Li Z.	Genome-wide identification, phylogeny and expression analysis of GRAS gene family in tomato.	BMC Plant Biol.	15	209	2015		
42274	26319516	Miyazaki S., Sato Y., Asano T., Nagamura Y., Nonomura K.I.	Rice MEL2, the RNA recognition motif (RRM) protein, binds in vitro to meiosis-expressed genes containing U-rich RNA consensus sequences in the 3'-UTR.	Plant Mol. Biol.			2015	MEL2	OsMEL2
42275	26296797	Ning Y., Shi X., Wang R., Fan J., Park C.H., Zhang C., Zhang T., Ouyang X., Li S., Wang G.L.	OsELF3-2, an ortholog of Arabidopsis ELF3, interacts with the E3 ligase APIP6 and negatively regulates immunity against Magnaporthe oryzae in rice.	Mol Plant			2015		
42276	26238949	Liu C., Song G., Zhou Y., Qu X., Guo Z., Liu Z., Jiang D., Yang D.	OsPRR37 and Ghd7 are the major genes for general combining ability of DTH, PH and SPP in rice.	Sci Rep	5	12803	2015		
42277	26320209	Matsushima R., Maekawa M., Sakamoto W.	Geometrical formation of compound starch grains in rice implements Voronoi diagram.	Plant Cell Physiol.			2015		
42278	26261267	Fang Y., Liao K., Du H., Xu Y., Song H., Li X., Xiong L.	A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice.	J. Exp. Bot.			2015	CATA,APX8,APX3,RBOHF,_,PRXIIE2	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE,ONAC003, ONAC3, ONAC016, ONAC16, SNAC3,Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2
42279	26258482	He Q., Yu J., Kim T.S., Cho Y.H., Lee Y.S., Park Y.J.	Resequencing Reveals Different Domestication Rate for BADH1 and BADH2 in Rice (Oryza sativa).	PLoS ONE	10(8)	e0134801	2015		
42280	26254327	Wu D., Shen H., Yokawa K., Balu?ka F.	Overexpressing OsPIN2 enhances aluminium internalization by elevating vesicular trafficking in rice root apex.	J. Exp. Bot.			2015		
42281	26296302	Nada R.M., Abogadallah G.M.	Restricting the above ground sink corrects the root/shoot ratio and substantially boosts the yield potential per panicle in field-grown rice (Oryza sativa).	Physiol Plant			2015		
42282	26278778	Mehra P., Pandey B.K., Giri J.	Genome-wide DNA polymorphisms in low Phosphate tolerant and sensitive rice genotypes.	Sci Rep	5	13090	2015		
42283	26313446	Grenier C., Cao T.V., Ospina Y., Quintero C., Ch?tel MH., Tohme J., Courtois B., Ahmadi N.	Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding.	PLoS ONE	10(8)	e0136594	2015		
42284	26258667	Yu C., Liu Y., Zhang A., Su S., Yan A., Huang L., Ali I., Liu Y., Forde B.G., Gan Y.	MADS-box Transcription Factor OsMADS25 Regulates Root Development through Affection of Nitrate Accumulation in Rice.	PLoS ONE	10(8)	e0135196	2015		
42285	26313002	Garneau A.P., Carpentier G.A., Marcoux A.A., Frenette-Cotton R., Simard C.F., R?mus-Borel W., Caron L., Jacob-Wagner M., No?l M., Powell J.J., B?langer R., C?t? F., Isenring P.	Aquaporins Mediate Silicon Transport in Humans.	PLoS ONE	10(8)	e0136149	2015		
42286	26280413	Shen H., Zhong X., Zhao F., Wang Y., Yan B., Li Q., Chen G., Mao B., Wang J., Li Y., Xiao G., He Y., Xiao H., Li J., He Z.	Overexpression of receptor-like kinase ERECTA improves thermotolerance in rice and tomato.	Nat. Biotechnol.			2015	RLCK204,SIK1	OsRLCK204, OsER1, ER1,OsSIK1, OsER2, ER2, OsERL, ERL
42287	26285801	Chen X., Liu X., Zhao Y., Zhou D.X.	Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice.	Sci Rep	5	13251	2015	CLF,_,_	OsSET24, SDG711, EZ1, OsCLF,JMJ703,OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL6
42288	26322055	Hasan M.K., Ahammed G.J., Yin L., Shi K., Xia X., Zhou Y., Yu J., Zhou J.	Melatonin mitigates cadmium phytotoxicity through modulation of phytochelatins biosynthesis, vacuolar sequestration, and antioxidant potential in Solanum lycopersicum L.	Front Plant Sci	6	601	2015		
42289	26263547	Srivastava R., Rai K.M., Pandey B., Singh S.P., Sawant S.V.	Spt-Ada-Gcn5-Acetyltransferase (SAGA) Complex in Plants: Genome Wide Identification, Evolutionary Conservation and Functional Determination.	PLoS ONE	10(8)	e0134709	2015		
42290	26287170	Yoneyama T., Ishikawa S., Fujimaki S.	Route and Regulation of Zinc, Cadmium, and Iron Transport in Rice Plants (Oryza sativa L.) during Vegetative Growth and Grain Filling: Metal Transporters, Metal Speciation, Grain Cd Reduction and Zn and Fe Biofortification.	Int J Mol Sci	16(8)	19111-29	2015		
42291	26270815	Inagaki N., Kinoshita K., Kagawa T., Tanaka A., Ueno O., Shimada H., Takano M.	Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.	PLoS ONE	10(8)	e0135408	2015	YL1,CAO2,_,_,RLIN1,_,YGL10,LYL1,ELL,_,_,_,_,PHYB,LM3,YGL18 ,_,_,FGL,YGL1,_,_,YGL98,_	MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP,OsCAO2, OsCAO, CAO,OsPorA, PORA, OsPORA,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,CPO, CPOX, LLM1, HEMF,ALAD, HEMB,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,PPX, PPO1 ,FC2, OsGUN6-2, GUN6-2 ,PBD, PBGD, HEMC,GSA, GSAT, HEML,phyB, PHYB1, OsPHYB, OsphyB,UroD, URO-D,ChlM, CHLM, MgMT,UroS,GUN4, OsGUN4,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsDVR, DVR,FC1, OsGUN6-1, GUN6-1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,OsChlH, ChlH, CHLH, OsCHLH
42292	26272901	Wang X.L., Song S.H., Wu Y.S., Li Y.L., Chen T.T., Huang Z.Y., Liu S., Dunwell T.L., Pfeifer G.P., Dunwell J.M., Wamaedeesa R., Ullah I., Wang Y., Hu S.N.	Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.	J. Exp. Bot.			2015		
42293	26302213	Zheng S., Zhao S., Li Z., Wang Q., Yao F., Yang L., Pan J., Liu W.	Evaluating the Effect of Expressing a Peanut Resveratrol Synthase Gene in Rice.	PLoS ONE	10(8)	e0136013	2015		
42294	26313122	Rahman M.Z., Fujishige M., Maeda M., Kimura Y.	Rice alpha-fucosidase active against plant complex type N-glycans containing Lewis a epitope: purification and characterization.	Biosci. Biotechnol. Biochem.		1-4	2015		
42295	26283788	Galiullina R.A., Kasperkiewicz P., Chichkova N.V., Szalek A., Serebryakova M.V., Poreba M., Drag M., Vartapetian A.B.	Substrate Specificity and Possible Heterologous Targets of Phytaspase, a Plant Cell Death Protease.	J. Biol. Chem.			2015		
42296	26322072	Fiorilli V., Vallino M., Biselli C., Faccio A., Bagnaresi P., Bonfante P.	Host and non-host roots in rice: cellular and molecular approaches reveal differential responses to arbuscular mycorrhizal fungi.	Front Plant Sci	6	636	2015		
42297	26300893	Forlani G., Bertazzini M., Zarattini M., Funck D.	Functional characterization and expression analysis of rice delta(1)-pyrroline-5-carboxylate dehydrogenase provide new insight into the regulation of proline and arginine catabolism.	Front Plant Sci	6	591	2015		
42298	26305329	Cho W.K., Lian S., Kim S.M., Seo B.Y., Jung J.K., Kim K.H.	Time-Course RNA-Seq Analysis Reveals Transcriptional Changes in Rice Plants Triggered by Rice stripe virus Infection.	PLoS ONE	10(8)	e0136736	2015		
42299	26277389	Yamamoto K., Shida S., Honda Y., Shono M., Miyake H., Oguri S., Sakamoto H., Momonoki Y.S.	Overexpression of acetylcholinesterase gene in rice results in enhancement of shoot gravitropism.	Biochem. Biophys. Res. Commun.			2015		
42300	26305923	Gao J.L., Wu M., Liu W., Feng Z.J., Zhang Y.Z., Jiang F.L., Liu Y., Dai J.	Dysfunction of Rice Mitochondrial Membrane Induced by Yb(3.)	J. Membr. Biol.			2015		
42301	26237574	Singh R.K., Pandey S.P.	Evolution of structural and functional diversification among plant Argonautes.	Plant Signal Behav		0	2015		
42302	26264916	Wennman A., Jerner?n F., Magnuson A., Oliw E.H.	Expression and characterization of manganese lipoxygenase of the rice blast fungus reveals prominent sequential lipoxygenation of alpha-linolenic acid.	Arch. Biochem. Biophys.	583	87-95	2015		
42303	26083154	Baldrich P., Campo S., Wu M.T., Liu T.T., Hsing Y.I., Segundo B.S.	MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors.	RNA Biol	12(8)	847-63	2015		
42304	26248689	Zhang X., Yang S., Wang J., Jia Y., Huang J., Tan S., Zhong Y., Wang L., Gu L., Chen J.Q., Pan Q., Bergelson J., Tian D.	A genome-wide survey reveals abundant rice blast R-genes in resistant cultivars.	Plant J.			2015		
42305	26331804	Byeon Y., Tan D.X., Reiter R.J., Back K.	Predominance of 2-hydroxymelatonin over melatonin in plants.	J. Pineal Res.			2015		
42306	26272249	Lin Q., Wu F., Sheng P., Zhang Z., Zhang X., Guo X., Wang J., Cheng Z., Wang J., Wang H., Wan J.	The SnRK2-APC/C(TE) regulatory module mediates the antagonistic action of gibberellic acid and abscisic acid pathways.	Nat Commun	6	7981	2015		
42307	26275148	Li J., Zhao Y., Chu H., Wang L., Fu Y., Liu P., Upadhyaya N., Chen C., Mou T., Feng Y., Kumar P., Xu J.	SHOEBOX Modulates root meristem Size in Rice through Dose-Dependent Effects of Gibberellins on Cell Elongation and Proliferation.	PLoS Genet.	11(8)	e1005464	2015	KS1,ERF142	OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26,OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1
42308	24268791	Cao Y., Yan Y., Zhang F., Hua-Dun Wang, Gu M., Xue-Neng Wu, Shu-Bin Sun, Guo-Hua Xu	Fine characterization of OsPHO2 knockout mutants reveals its key role in Pi utilization in rice.	J. Plant Physiol.			2013	PHF1,LTN1,PHR2	OsPHF1, OsWD40-137, OsSEC12,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPHR2, Os-PHR2
42309	19841664	Sawa S., Kinoshita A., Betsuyaku S., Fukuda H.	A large family of genes that share homology with CLE domain in Arabidopsis and rice.	Plant Signal Behav	3(5)	337-9	2008	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,FON2,_,_,_,_,_,_,_,_,_,_,_,_,_	OsCLE505, CLE505,Os_CLE15, OsCLE15, CLE15,OsCLE508, CLE508,OsCLE204, CLE204,Os_CLE46, OsCLE46, CLE46,Os_CLE45, OsCLE45, CLE45,OsCLE201, CLE201,OsCLE102, CLE102,OsCLE502, CLE502,OsCLE101, CLE101,Os_CLE24, OsCLE24, CLE24,Os_CLE44, OsCLE44, CLE44,OsCLE301, CLE301,OsCLE506, CLE506,OsCLE206, CLE206,Os_CLE51, OsCLE51, CLE51,Os_CLE43, OsCLE43, CLE43,Os_CLE71, OsCLE71, CLE71,Os_CLE48, OsCLE48, CLE48,OsCLE504, CLE504,OsCLE104, CLE104,OsCLE509, CLE509,OsCLE303, CLE303,Os_CLE49, OsCLE49, CLE49,OsCLE507, CLE507,OsCLE603, CLE603,OsCLE602, CLE602,OsCLE205, CLE205,OsCLE403, CLE403,Os_CLE42, OsCLE42, CLE42,OsCLE302, CLE302,Os_CLE50, OsCLE50, CLE50,FOS1, OsCLE202, CLE202,fon2, FON4, OsFON4, FON2/FON4, TG1,OsCLE503, CLE503,OsCLE306, CLE306,OsCLE103, CLE103,OsCLE203, CLE203,OsCLE404, CLE404,Os_CLE47, OsCLE47, CLE47,OsCLE305, CLE305,OsCLE601, CLE601,OsCLE304, CLE304,OsCLE501, CLE501,FCP1, FCP1/Os CLE402, Os CLE402, OsCLE402,OsCLE401, CLE401,OsCLE801, CLE801
42310	23534212	Wang F., Shang Y., Yang L., Zhu C.	Comparative proteomic study and functional analysis of translationally controlled tumor protein in rice roots under Hg2+ stress.	J Environ Sci (China)	24(12)	2149-58	2012	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb
42311	25120549	Diego F Guti?rrez-Galeano, Roberto Toscano-Morales, Berenice Calder?n-P?rez, Beatriz Xoconostle-C?zares, Roberto Ruiz-Medrano	Structural divergence of plant TCTPs.	Front Plant Sci	5	361	2014	_	OsTCTP, TCTP, OsTCTPa, OsTCTPb
42312	25103875	Liu X., Huang D., Tao J., Anthony J Miller, Fan X., Xu G.	Identification and functional assay of the interaction motifs in the partner protein OsNAR2.1 of the two-component system for high-affinity nitrate transport.	New Phytol.	204(1)	74-80	2014	NAR2.1,NRT2.3	OsNAR2.1, OsNRT3.1A,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
42313	19752888	Ding W., Yu Z., Tong Y., Huang W., Chen H., WU P.	A transcription factor with a bHLH domain regulates root hair development in rice.	Cell Res.	19(11)	1309-11	2009	RHL1	OsbHLH115, OsRHL1
42314	23550829	Ming-Yan Cheung, Man-Wah Li, Yuk-Lin Yung, Chao-Qing Wen, Hon-Ming Lam	The unconventional P-loop NTPase OsYchF1 and its regulator OsGAP1 play opposite roles in salinity stress tolerance.	Plant Cell Environ.	36(11)	2008-20	2013	_,_	OsYchF1, YchF1, OsPM8ATP ,OsGAP1, GAP1
42315	21737415	Lata C., Prasad M.	Role of DREBs in regulation of abiotic stress responses in plants.	J. Exp. Bot.	62(14)	4731-48	2011	ERF42,DREB1F,DREB1C,DREB2A,DREB1B,ERF44,DREB1D,ERF41,DREB1A	OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsERF#044, OsERF044, OsERF44, AP2/EREBP#112, AP2/EREBP112, OsDREB2C, DREB2C, OsEnS-124,OsDREB1D, CBF4, ERF116, OsERF#116, OsERF116, AP2/EREBP#054, AP2/EREBP54, OsCbf1, OsCBF1,OsERF#041, OsERF041, OsERF41, AP2/EREBP#025, AP2/EREBP25, OsDREB2E,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
42316	12844217	Jian-Quan Chen, Dong Y., Yu-Jun Wang, Liu Q., Jin-Song Zhang, Shou-Yi Chen	An AP2/EREBP-type transcription-factor gene from rice is cold-inducible and encodes a nuclear-localized protein.	Theor. Appl. Genet.	107(6)	972-9	2003	DREB1A	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
42317	21151904	Plett D., Toubia J., Garnett T., Tester M., Brent N Kaiser, Baumann U.	Dichotomy in the NRT gene families of dicots and grass species.	PLoS ONE	5(12)	e15289	2010	_,_,NRT2.3,NAR2.1,NAR2.2,_,_,_,_,NRT2.1,_,NRT2.2,_,_,_,_	OsNRT1.7,OsNRT1.2,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNAR2.1, OsNRT3.1A,OsNAR2.2, OsNRT3.1B,OsNRT1.5A,OsNRT1.3A,OsNRT1.5B,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3, NPF6.3,OsNRT2.1, OsNRT2.2,OsNRT1.4,OsNRT2.2, OsNRT2.1,OsNRT3.2,NRT1.1B, OsNRT1.1B, OsNPF6.5, NPF6.5,OsNRT1.1C,OsNRT1.3B
42318	18424615	Zhang C., Eileen L Mallery, Schlueter J., Huang S., Fan Y., Brankle S., Christopher J Staiger, Daniel B Szymanski	Arabidopsis SCARs function interchangeably to meet actin-related protein 2/3 activation thresholds during morphogenesis.	Plant Cell	20(4)	995-1011	2008	_,_,_,ES1	OsSCAR4, SCAR4,OsSCAR2, SCAR2, OsSCAR3, SCAR3,OsSCAR3, SCAR3, OsSCAR2, SCAR2,TUT1, OsSCAR1, SCAR1, TUT1/OsSCAR1
42319	25400654	Liu X., Zhou C., Zhao Y., Zhou S., Wang W., Dao-Xiu Zhou	The rice enhancer of zeste [E(z)] genes SDG711 and SDG718 are respectively involved in long day and short day signaling to mediate the accurate photoperiod control of flowering time.	Front Plant Sci	5	591	2014	SE1,CLF,EF1,IEZ1,_	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsSET24, SDG711, EZ1, OsCLF,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718,OsLF, LF, OsbHLH119
42320	21362738	Ding Y., Chen Z., Zhu C.	Microarray-based analysis of cadmium-responsive microRNAs in rice (Oryza sativa).	J. Exp. Bot.	62(10)	3563-73	2011	MIR1432,MIR156L,MIR156K,MIR166M,MIR166K,MIR171G,MIR171,MIR162A,MIR156A,MIR166E,MIR528,MIR168A,MIR396D,MIR168B,MIR444B,MIR390,MIR166I,MIR166G,MIR171B	miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,miR156l, OsmiR156l, osmiR156l, osa-miR156l, osa-MIR156l, osa-miR156l-3p, osa-miR156l-5p,miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,miR166m, osa-miR166m,miR166k, osa-miR166kosa-miR166k-3p osa-miR166k-5p,miR171g, osa-miR171g,miR171, osa-miR171, miR171a, osa-miR171a, osa-MIR171a,miR162a, osa-miR162a, osa-MIR162a,miR156a, OsmiR156a, osmiR156a, osa-miR156a, osa-MIR156a,miR166e, osa-miR166eosa-miR166e-3p osa-miR166e-5p,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,miR168a, osa-miR168a, osa-MIR168a osa-miR168a-3p osa-miR168a-5p,miR396d, osa-miR396d, osa-MIR396d,miR168b, osa-miR168b, osa-MIR168b,miR444b, osa-MIR444b, osa-miR444b, osa-miR444b.1, osa-miR444b.2,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,miR166i, osa-miR166iosa-miR166i-3p,miR166g, osa-miR166gosa-miR166g-3p osa-miR166g-5p,miR171b, osa-miR171b
42321	12136031	Jiang N., Bao Z., Temnykh S., Cheng Z., Jiang J., Rod A Wing, Susan R McCouch, Susan R Wessler	Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice.	Genetics	161(3)	1293-305	2002	DASHENG	Dasheng
42322	16895613	Lokesh P Tripathi, R Sowdhamini	Cross genome comparisons of serine proteases in Arabidopsis and rice.	BMC Genomics	7	200	2006	SCP30,SCP31,SCP33,SCP47,SCP54,SCP57,_,CLPP4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SCP14,TCM5,_,_,SCP12,_,SCP2,SCP38,SCP4,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SCP64,_,CLPP5,_,_,_,_,_,_,_,_,_,_,_,CPD3,_,_,SCP41,_,_,CLPP3,_,_,_,VYL,_,_,_,_,_,_,_,SCP45,_,_,_,_,_,_,_,_,_,_,_,_,GS5,_,_,_,_,SCP25,_,_,_,_,SCP20,_,SCP23,_,_,SCP44,_,_,SCP18,_,CLPR4,CPD3L,CPD2B,CPD1,SCP66,SCP21,SCP61,_,SCP22,SCP59,SCP36,_,_,SCP29,SCP56,_,SCP17,_,SCP7,SCP15,SCP5,_,_,_,_,SCP43,_,_,SCP51,_,SCP53,SCP9,_,_,SCP52,_,SCP48,_,SCP16,_,_,_,_,_,SCP27,_,_,SCP11,SCP37,_,_,SCP40,SCP24,_,_,_,_,_,_,_,SCP1,RADA,_,_,SCP42,_,SCP32,SCP34,_,_,_,_,SCP49,SCP35,_,_,_,_,_,SCP19,SCP63,SCP13,_,_,_,SCP8,_,_,_	OsSCP30,OsSCP31,OsSCP33,OsSCP47,OsSCP54, OsSCP55, SCP55,OsSCP57, OsSCP58, SCP58,OsSBeL1, SBeL1, SBEL1,OsClpP4, ClpP4, OsClp11, CLP11,OsClp12, CLP12,OsSigP2, SIGP2,OsProCP3, PROCP3,OsRhmbd6, RHMBD6,OsSub3, SUB3,OsSub7, SUB7,OsSub12, SUB12,OsSub25, SUB25,OsSub29, SUB29,OsSub31, SUB31,OsSub32, SUB32,OsSub36, SUB36,OsSub37, SUB37,OsSub43, SUB43,OsSub46, SUB46,OsSub52, SUB52,OsDegp8, DEGP8, OsDeg15,OsClp8, CLP8,OsSub35, SUB35,OsSCP14,OsDegp7, DEGP7, OsDeg10,OsPOP7, POP7,OsSub17, SUB17,OsSCP12,OsClp9, CLP9,OsSCP2, SCP3, OsSCP3,OsSCP38,OsSCP4,OsDegp13, DEGP13, OsDeg-like 3,OsPOP5, POP5,OsDegp5, DEGP5, OsDeg8,OsDegp6, DEGP6, OsDeg2,OsDegp2, DEGP2, OsDeg7,OsDegp1, DEGP1, OsDeg-like 1,OsSigP4, SIGP4,OsRhmbd3, RHMBD3,OsDegp9, DEGP9, OsDeg1,OsDegp10, DEGP10, OsDeg9.2,OsDegp3, DEGP3, OsDeg9.1,OsSub22, SUB22, OsSASP, SASP ,MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96,OsLon1, LON1, OsLonP4, LONP4, LON2 ,OsDegp14, DEGP14, OsDeg-like 4,OsDegp12, DEGP12, OsDeg14,OsDegp11, DEGP11, OsDeg-like 2,OsSub62, SUB62,OsCLP3, OsClp3, CLP3,OsSub24, SUB24,OsSub33, SUB33,OsSub47, SUB47,OsSub63, SUB63,OsSCP64,OsSub61, SUB61,OsClpP5, ClpP5, OsClp4, CLP4,OsClp13, CLP13,OsSub60, SUB60,OsSub59, SUB59,OsSub57, SUB57,OsSub55, SUB55,OsSub58, SUB58,OsSub54, SUB54,OsClp7, CLP7,OsSub50, SUB50,OsSub49, SUB49,OsSub51, SUB51,cbp3, R-CPD3, OsSCP6, SCP6,OsSub11, SUB11,OsSub1, SUB1,OsSCP41,OsSub45, SUB45,OsClp10, CLP10,OsClpP3, OsClp2, CLP2,OsSDD1, SDD1, OsSub26, SUB26,OsSigP3, SIGP3,OsLonP3, LONP3,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsSTA4, OsRhmbd1, RHMBD1,Hwi2, OsSub9, SUB9,OsSub48, SUB48,OsRhmbd7, RHMBD7,OsSub18, SUB18,OsNucAP3, NUCAP3,OsNucAP2, NUCAP2,OsSCP45, OsSCP46, SCP46,OsSub42, SUB42, OsSP2, OS-MSP ,OsSub10, SUB10,OsSub4, SUB4,OsRhmbd13, RHMBD13,OsSub30, SUB30,OsRhmbd17, RHMBD17,OsRhmbd16, RHMBD16,OsRhmbd14, RHMBD14,OsRhmbd9, RHMBD9,OsSigP7, SIGP7,OsRhmbd4, RHMBD4,OsProCP5, PROCP5,OsSCP26, SCP26, OsGS5,OsProtIV1, PROTIV1,OsProCP1, PROCP1,OsProCP4, PROCP4,OsSigP6, SIGP6,OsSCP25,OsSigP1, SIGP1,OsRhmbd15, RHMBD15,OsPOP1, POP1,OsSub41, SUB41,OsSCP20,OsSub16, SUB16,OsSCP23,OsRhmbd2, RHMBD2,OsSub39, SUB39,OsSCP44,OsSub53, SUB53,OsSub38, SUB38,OsSCP18,OsSub23, SUB23,OsClpR4, ClpR4, OsClp1, CLP1,R-CPD3L, cbp31, OsSCP39, SCP39,OsSCP10, SCP10,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsSCP66,OsSCP21,OsSCP61, OsSCP62, SCP62,OsSub40, SUB40,OsSCP22,OsSCP59, OsSCP60, SCP60,OsSCP36,OsClp5, CLP5,OsRhmbd10, RHMBD10,OsSCP29,OsSCP56,OsRhmbd18, RHMBD18,OsSCP17,OsSub56, SUB56,OsSCP7,OsSCP15,OsSCP5,OsPOP22, POP22,OsPOP17, POP17,OsPOP4, POP4,OsCttP1, CTTP1,OsSCP43,OsPOP11, POP11,OsPOP3, POP3,OsSCP51,OsSub34, SUB34,OsSCP53,OsSCP9,OsLonP1, LONP1,OsPOP20, POP20,OsSCP52,OsSub14, SUB14,OsSCP48,OsSub28, SUB28,OsSCP16,OsSub19, SUB19,OsPOP15, POP15,OsRhmbd12, RHMBD12,OsPOP13, POP13,RSP1, OsSub5, SUB5, OsSub6, SUB6,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsSub15, SUB15,OsDegp15, DEGP15, OsDeg5,OsSCP11,OsSCP37,OsSub2, SUB2, SLP1, OsSLP1,OsCttP3, CTTP3,OsSCP40,OsSCP24,OsSub8, SUB8,OsRhmbd11, RHMBD11,OsRhmbd8, RHMBD8,OsRhmbd5, RHMBD5,OsProCP2, PROCP2,OsSTA82, STA82, OsPOP6, POP6,OsPOP19, POP19,OsSCP1,OsRADA, OsRadA, OsLonP2, LONP2,OsSub13, SUB13,OsSub21, SUB21,OsSCP42,OsDegp4, DEGP4, OsDeg-like 6,OsSCP32,OsSCP34,OsCttP2, CTTP2,OsPOP14, POP14,OsSP1, OsSub20, SUB20,OsPOP23, POP23,OsSCP49, OsSCP50, SCP50,OsSCP35,OsPOP21, POP21,OsSub27, SUB27,OsPOP9, POP9,OsSigP5, SIGP5,OsPOP10, POP10,OsSCP19,OsSCP63,OsSCP13,OsSub44, SUB44,OsPOP2, POP2,OsPOP8, POP8,OsSCP8,OsPOP12, POP12,OsPOP16, POP16,OsPOP18, POP18
42323	17145706	Ouyang S., Zhu W., Hamilton J., Lin H., Campbell M., Childs K., Fran?oise Thibaud-Nissen, Renae L Malek, Lee Y., Zheng L., Orvis J., Haas B., Wortman J., C Robin Buell	The TIGR Rice Genome Annotation Resource: improvements and new features.	Nucleic Acids Res.	35(Database issue)	D883-7	2007	SCP40,CPD3L,SCP11,SCP22,SCP29,_,_,_,_,_,_,_,SCP54,_,_,_,_,GS5,SCP9,SCP12,TCM5,SCP64,_,SCP37,_,_,_,SCP20,_,CLPP4,_,_,_,SCP21,_,_,_,_,_,_,_,_,_,CPD2B,_,_,_,_,_,SCP17,RADA,_,_,_,_,_,_,_,_,_,SCP44,VYL,_,_,_,_,CLPR4,_,SCP19,_,_,_,_,_,_,_,_,_,_,SCP53,_,_,_,_,_,_,_,_,_,_,SCP25,_,_,_,_,_,_,_,_,_,_,SCP27,_,SCP24,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CLPP5,CLPP3,CPD1,SCP66,SCP59,SCP63,SCP61,_,SCP32,SCP30,SCP47,_,_,_,_,_,_,CPD3,_,_,SCP33,SCP56,_,SCP45,_,SCP2,_,_,_,_,_,_,_,_,_,_,SCP1,_,SCP52,_,SCP51,_,SCP14,_,_,_,_,SCP16,_,SCP36,_,SCP41,_,SCP23,_,_,_,_,SCP38,_,_,_,SCP43,_,SCP35,_,SCP18,SCP4,_,SCP31,_,SCP49,_,_,_,_,SCP48,_,SCP5,SCP15,SCP8,_,SCP34,SCP57,SCP42,_,_,SCP7,_,_,_,_,SCP13	OsSCP40,R-CPD3L, cbp31, OsSCP39, SCP39,OsSCP11,OsSCP22,OsSCP29,OsRhmbd13, RHMBD13,RSP1, OsSub5, SUB5, OsSub6, SUB6,OsClp10, CLP10,OsDegp1, DEGP1, OsDeg-like 1,OsDegp6, DEGP6, OsDeg2,OsDegp3, DEGP3, OsDeg9.1,OsDegp8, DEGP8, OsDeg15,OsSCP54, OsSCP55, SCP55,OsRhmbd9, RHMBD9,OsDegp4, DEGP4, OsDeg-like 6,OsDegp5, DEGP5, OsDeg8,OsSub43, SUB43,OsSCP26, SCP26, OsGS5,OsSCP9,OsSCP12,OsDegp7, DEGP7, OsDeg10,OsSCP64,OsCttP3, CTTP3,OsSCP37,OsDegp11, DEGP11, OsDeg-like 2,OsDegp13, DEGP13, OsDeg-like 3,OsDegp15, DEGP15, OsDeg5,OsSCP20,OsSub22, SUB22, OsSASP, SASP ,OsClpP4, ClpP4, OsClp11, CLP11,OsSub47, SUB47,OsSub63, SUB63,OsClp5, CLP5,OsSCP21,OsSub2, SUB2, SLP1, OsSLP1,OsSub61, SUB61,OsCLP3, OsClp3, CLP3,OsSub60, SUB60,OsSub58, SUB58,OsSub59, SUB59,OsSub56, SUB56,OsSub52, SUB52,OsSub53, SUB53,OsSCP10, SCP10,OsSub51, SUB51,OsSub55, SUB55,OsSub50, SUB50,OsSub49, SUB49,OsSBeL1, SBeL1, SBEL1,OsSCP17,OsRADA, OsRadA, OsLonP2, LONP2,OsSub29, SUB29,OsSigP4, SIGP4,OsSub37, SUB37,OsClp12, CLP12,OsDegp9, DEGP9, OsDeg1,OsDegp10, DEGP10, OsDeg9.2,OsSigP3, SIGP3,OsSub33, SUB33,OsRhmbd12, RHMBD12,OsSCP44,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsClp8, CLP8,OsSTA4, OsRhmbd1, RHMBD1,OsNucAP3, NUCAP3,Hwi2, OsSub9, SUB9,OsClpR4, ClpR4, OsClp1, CLP1,OsNucAP2, NUCAP2,OsSCP19,OsSub3, SUB3,OsRhmbd7, RHMBD7,OsSub13, SUB13,OsSub16, SUB16,OsSub12, SUB12,OsSub14, SUB14,OsSub15, SUB15,OsSub1, SUB1,OsSub10, SUB10,OsSub11, SUB11,OsSCP53,OsSub7, SUB7,OsSub4, SUB4,OsSP1, OsSub20, SUB20,OsSub30, SUB30,OsSub42, SUB42, OsSP2, OS-MSP ,OsRhmbd17, RHMBD17,OsRhmbd18, RHMBD18,OsRhmbd14, RHMBD14,OsRhmbd15, RHMBD15,OsRhmbd16, RHMBD16,OsSCP25,OsClp7, CLP7,OsRhmbd2, RHMBD2,OsRhmbd3, RHMBD3,OsCttP2, CTTP2,OsProCP1, PROCP1,OsProCP4, PROCP4,OsProCP3, PROCP3,OsSigP2, SIGP2,OsSub48, SUB48,OsSigP6, SIGP6,OsEnS-75, OsSCP27, OsSCP28, SCP28,OsRhmbd11, RHMBD11,OsSCP24,OsSub54, SUB54,OsSub17, SUB17,OsSigP7, SIGP7,OsSub25, SUB25,OsPOP14, POP14,OsSub41, SUB41,OsSub45, SUB45,OsSub44, SUB44,OsSub40, SUB40,OsSub35, SUB35,OsSub27, SUB27,OsSub38, SUB38,OsSub24, SUB24,OsSigP1, SIGP1,OsSub21, SUB21,OsSDD1, SDD1, OsSub26, SUB26,OsClpP5, ClpP5, OsClp4, CLP4,OsClpP3, OsClp2, CLP2,cbp1, R-CPD1, CBP I, CBP1, OsSCP65, SCP65,OsSCP66,OsSCP59, OsSCP60, SCP60,OsSCP63,OsSCP61, OsSCP62, SCP62,OsSub23, SUB23,OsSCP32,OsSCP30,OsSCP47,OsPOP1, POP1,OsProCP5, PROCP5,OsClp9, CLP9,OsPOP5, POP5,OsRhmbd4, RHMBD4,OsRhmbd8, RHMBD8,cbp3, R-CPD3, OsSCP6, SCP6,OsSub31, SUB31,OsPOP2, POP2,OsSCP33,OsSCP56,OsSub39, SUB39,OsSCP45, OsSCP46, SCP46,OsPOP11, POP11,OsSCP2, SCP3, OsSCP3,OsPOP23, POP23,OsPOP19, POP19,OsPOP20, POP20,OsPOP15, POP15,OsPOP16, POP16,OsPOP8, POP8,OsSub46, SUB46,OsPOP3, POP3,OsPOP4, POP4,OsSub32, SUB32,OsSCP1,OsPOP17, POP17,OsSCP52,OsLonP1, LONP1,OsSCP51,MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96,OsSCP14,OsSub28, SUB28,OsSub36, SUB36,OsSub18, SUB18,OsLonP3, LONP3,OsSCP16,OsSub57, SUB57,OsSCP36,OsClp13, CLP13,OsSCP41,OsPOP18, POP18,OsSCP23,OsDegp14, DEGP14, OsDeg-like 4,OsPOP9, POP9,OsRhmbd5, RHMBD5,OsSub8, SUB8,OsSCP38,OsRhmbd6, RHMBD6,OsSigP5, SIGP5,OsPOP10, POP10,OsSCP43,OsProtIV1, PROTIV1,OsSCP35,OsSub34, SUB34,OsSCP18,OsSCP4,OsRhmbd10, RHMBD10,OsSCP31,OsPOP12, POP12,OsSCP49, OsSCP50, SCP50,OsDegp12, DEGP12, OsDeg14,OsLon1, LON1, OsLonP4, LONP4, LON2 ,OsSub19, SUB19,OsPOP21, POP21,OsSCP48,OsPOP22, POP22,OsSCP5,OsSCP15,OsSCP8,OsPOP13, POP13,OsSCP34,OsSCP57, OsSCP58, SCP58,OsSCP42,OsPOP7, POP7,OsProCP2, PROCP2,OsSCP7,OsSTA82, STA82, OsPOP6, POP6,OsDegp2, DEGP2, OsDeg7,OsSub62, SUB62,OsCttP1, CTTP1,OsSCP13
42324	15914931	Kiribuchi K., Jikumaru Y., Kaku H., Minami E., Hasegawa M., Kodama O., Seto H., Okada K., Nojiri H., Yamane H.	Involvement of the basic helix-loop-helix transcription factor RERJ1 in wounding and drought stress responses in rice plants.	Biosci. Biotechnol. Biochem.	69(5)	1042-4	2005	_	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
42325	0	Kazuhiro Ohtsu Sawako Hamanaka Katsumi yamazaki Mikio Nakazono	Characterization of a cDNA Encoding a Novel Subunit for cytochrome c (COX6b) from Rice	Breed. Sci.	49	211-215	1999	_	OsCOX6b1, COX6b1, OsCOX6b-1, COX6b-1
42326	0	G. Park S., O. Kim S., J. Koh H., H. Lee Y.	A Blast Lesion Mimic Mutant of Rice	Advances in Rice Blast Research	15	79-85	2000	BLM	blm (=bl2)
42327	0	Wen-Bing CHEN, Ikuo NAKAMURA, Yo-Ichiro SATO, Hirokazu NAKAI	Distribution of deletion type in cpDNA of cultivated and wild rice	The Japanese Journal of Genetics	68(6)	597-603	1993	_	ORF100
42328	15806324	Yamamoto T., Mori Y., Ishibashi T., Uchiyama Y., Ueda T., Ando T., Hashimoto J., Kimura S., Sakaguchi K.	Interaction between proliferating cell nuclear antigen (PCNA) and a DnaJ induced by DNA damage.	J. Plant Res.	118(2)	91-7	2005	_,_	OsPCNA, PCNA,OsDjA7, OsDnaJ
42329	0	Naoki MIDOH, Michiaki IWATA	Expression of Defense-related Genes by Probenazole or 1, 2-Benzisothiazole-3(2H)-one 1, 1-dioxide	Journal of Pesticide Science			1997	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
42330	10939258	Z Yin, J Chen, L Zeng, M Goh, H Leung, G S Khush, G L Wang	Characterizing rice lesion mimic mutants and identifying a mutant with broad-spectrum resistance to rice blast and bacterial blight.	Mol. Plant Microbe Interact.	13(8)	869-76	2000	SPL11,PR1B,PR10A	spl11, spl11*, OsPUB11, PUB11,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
42331	0	WANG Li-Juan, TIAN Ying-Chuan, HE Chao-Zu	Cloning of a Novel Rice Gene OsLSD1 and Bioinformatic Analysis of LSD1-like gene Family From Arabidopsis and Rice	Prog. Biochem. Biophys.	32(3)	268-274	2005	_	OsLSD1, OsLOL1, OsLSD1.1, LSD1.1, LSD1
42332	11332734	L Xiong, M W Lee, M Qi, Y Yang	Identification of defense-related rice genes by suppression subtractive hybridization and differential screening.	Mol. Plant Microbe Interact.	14(5)	685-92	2001	_,RPN7,GSTU12,CKX4,TIFY10B,_,WRKY108,RPL13B,ERF93,MTI1A,_,_,_,_,MSRMK2,_,_,BETACA1,_,_,_,_,SALT,_,STR12,_,_,_,_,_,_,_,_,_,LEA9,_,_,GRP3,_,_,_,_,NAC6,SAP8,MPK7,PGK2,PDR9,_,PR1B,CCA1,_,_,PR10A	,OsRpn7, Rpn7 ,OsGSTU12, OsGSTU6.2, GSTU6.2,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,UDP-GT, Os79 ,OsWRKY108,RPL13b, OsRPL13b,OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OS-PYDK, Ospdhk, PDHK, Ospdhk2, pdhk2 OsHRK1, HRK1,CHI2, OsCHI2,KCS,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62,C10728, OsChib3a ,OsCA, CA, OsbetaCA1, betaCA1,OsGME1, GME1,WZF1,MDH,,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,GRP, Osgrp-2, OsGRP-2, GRCWP,OsStr12, Str12, TROL, Os-TROL, OsTROL,OsATL15, ATL15,,,,,,,,,OsLEA9, OsLEA5, LEA5,,OsNPR4, NPR4,OsGRP3, RTP, RBP-152 ,ARF, ARF1, OsARFA1b, ARFA1b,OsCBSCBSPB4, CBSCBSPB4,OsCPR1, CPR1,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP ,OsPDR9, ospdr9, OsPDR3, PDR3,,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
42333	0	Wang H., Taketa S., Miyao A., Hirochika H., Ichii M.	Isolation of a novel lateral-rootless mutant in rice (Oryza sativa L.) with reduced sensitivity to auxin	Plant Science	170	70-77	2006	LRT2	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti 
42334	0	Zaibin H.A.O., Masahiko ICHII	A Mutant RM109 of Rice (Oryza sativa L.) Exhibiting Altered lateral root Initiation and Gravitropism.	Japanese Journal of Crop Science	68(2)	245-252	1999	LRT1	Lrt1*, Lrt1, Lrt 1
42335	26709535	Walter T., King Z., Walker K.D.	A tyrosine aminomutase from Rice (Oryza sativa) Isomerizes (S)-alpha- to (R)-beta-Tyrosine with Unique High Enantioselectivity and Retention of Configuration.	Biochemistry			2015	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM
42336	26631749	Wang L., Sun S., Jin J., Fu D., Yang X., Weng X., Xu C., Li X., Xiao J., Zhang Q.	Coordinated regulation of vegetative and reproductive branching in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(50)	15504-9	2015	MIR172D,RFL,MIR172B,SPL17,SNB,MIR529B,PAP2,RSR1,LAX1,SPL7,_,MIR529A,ASP1,MIR156D,RCN1,IDS1,WFP	OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,OsSPL17,AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB,miR529b, Osa-miR529b, OsmiR529b,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,OsSPL7,OsWD40-66, TPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2,miR529a, Osa-miR529a, OsmiR529a,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3,miR156d, OsmiR156d, osmiR156d, osa-miR156d, osa-MIR156d,Rcn1, FDR2, Fdr2, RCN1/FDR2, OsRCN1,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2 ,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
42337	26680197	Gutjahr C., Gobbato E., Choi J., Riemann M., Johnston M.G., Summers W., Carbonnel S., Mansfield C., Yang S.Y., Nadal M., Acosta I., Takano M., Jiao W.B., Schneeberger K., Kelly K.A., Paszkowski U.	Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex.	Science	350(6267)	1521-4	2015	AOC,_	OsAOC, AOC1, OsAOC1, HB, CPM2,D14L, 
42338	26663563	Dai X., Wang Y., Zhang W.H.	OsWRKY74, a WRKY transcription factor, modulates tolerance to phosphate starvation in rice.	J. Exp. Bot.			2015	WRKY74	OsWRKY74
42339	26681628	Kakar K.U., Ren X.L., Nawaz Z., Cui Z., Li B., Xie G., Hassan M.A., Ali E., Sun G.	Consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).	Plant Biol (Stuttg)			2015	_,GOLS1,_,CNGC2,CNGC8,CNGC5,DREB1A,NAC6,WRKY11,CDPK7	OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL,OsGolS1, GolS1,OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,OsCNGC2, OsCNGC1 ,OsCNGC8, OsCNGC6, OsCNGC9,OsCNGC5, OsCNGC10 ,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsCDPK7, OsCPK7, CDPK1, OsCDPK11, CDPK12, OsCDPK13
42340	26634536	Xu X., Tan Y.P., Cheng G., Liu X.Q., Xia C.J., Luo F.Y., Wang C.T.	Genomic survey and gene expression analysis of the VDAC gene family in rice.	Genet. Mol. Res.	14(4)	15683-96	2015	_,_,_,_,_,_,_,_	OSVDAC4, osvdac4, OsVDAC4, VDAC4,OSVDAC1, osvdac1, OsVDAC1, VDAC1,NP1977, OsVDAC8, VDAC8, Os1977,OsVDAC4, OsVDAC5, VDAC5,OSVDAC3, osvdac3, OsVDAC3, VDAC3,OSVDAC2, osvdac2, OsVDAC2, VDAC2,OSVDAC7, osvdac7, OsVDAC7, VDAC7,OSVDAC6, osvdac6, OsVDAC6, VDAC6
42341	26679011	Zhou X., Wang J., Peng C., Zhu X., Yin J., Li W., He M., Wang J., Chern M., Yuan C., Wu W., Ma W., Qin P., Ma B., Wu X., Li S., Ronald P., Chen X.	Four receptor-like cytoplasmic kinases regulate development and immunity in rice.	Plant Cell Environ.			2015	RLCK57,RLCK176,RLCK107,XA21,D61,RLCK118	OsRLCK57,OsRLCK176,OsRLCK107,Xa21*, Xa21, OsXA21,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsRLCK118
42342	26666551	Tripathy M.K., Tiwari B.S., Reddy M.K., Deswal R., Sopory S.K.	Ectopic expression of PgRab7 in rice plants (Oryza sativa L.) results in differential tolerance at the vegetative and seed setting stage during salinity and drought stress.	Protoplasma			2015	GLR3.1,HKT4,NHX2,APX1,SOS1,_,SODCC1,_,HKT1,CATA,NHX1,CATB	OsGLR3.2, GLR3.2, OsGLR3.1,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsNHX2,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsSOS1, OsNHA1,OsRab7B1, Rab7B1, OsRab7,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsWD40-166,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsNHX1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
42343	26699939	Dou X.Y., Yang K.Z., Ma Z.X., Chen L.Q., Zhang X.Q., Bai J.R., Ye De.	AtTMEM18 plays important roles in pollen tube and vegetative growth in Arabidopsis.	J Integr Plant Biol			2015	_	OsTMEM18, TMEM18
42344	26708413	Weidenbach D., Esch L., M?ller C., Hensel G., Kumlehn J., H?fle C., H?ckelhoven R., Schaffrath U.	Polarized Defence Against Fungal Pathogens Is Mediated by the jacalin-related Lectin Domain of Modular Poaceae-Specific Proteins.	Mol Plant			2015	_	OsJAC1, JAC1
42345	26718470	Li S.B., Xu S.R., Zhang R.N., Liu Y., Zhou R.C.	The antibiosis action and rice induced resistance, mediated by a lipopeptide from Bacillus amyloliquefaciens B014, in controlling rice disease caused by Xanthomonas oryzae pv. Oryzae.	J. Microbiol. Biotechnol.			2015	WRKY45,NH1,NCED1,DHN1	OsWRKY45,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23
42346	26691393	Tu B., Hu L., Chen W., Li T., Hu B., Zheng L., Lv Z., You S., Wang Y., Ma B., Chen X., Qin P., Li S.	Disruption of OsEXO70A1 Causes Irregular Vascular Bundles and Perturbs Mineral Nutrient Assimilation in Rice.	Sci Rep	5	18609	2015	EXO70FX13,EXO70D1,EXO70A4,EXO70A3,EXO70F3,EXO70F1,RLS2	OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70,OsEXO70D1, OsExo70D1, OrysaD1_Exo70,OsEXO70A4, OsExo70A4, OrysaA4_Exo70,OsEXO70A3, OsExo70A3, OrysaA3_Exo70,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,OsEXO70F1, OsExo70F1, OrysaF1_Exo70,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70
42347	26715595	Qin H., Deng Z., Zhang C., Wang Y., Wang J., Liu H., Zhang Z., Huang R., Zhang Z.	Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.	Plant Mol. Biol.			2015	_,_,_	OsMPG3, MPG3, OsVTC1-3, VTC1-3,OsMPG4, MPG4, OsVTC1-8, VTC1-8,OsMPG1, MPG1, OsVTC1-1, VTC1-1
42348	26697042	Mani B., Agarwal M., Katiyar-Agarwal S.	Comprehensive Expression Profiling of Rice Tetraspanin Genes Reveals Diverse Roles During Development and Abiotic Stress.	Front Plant Sci	6	1088	2015	TET7,TET1,TET3,TET13,TET10,TET2,TET4,TET6,TET9,TET14,TET8,TET12,TET5,TET11,TET15	OsTET7,OsTET1,OsTET3,OsSAP, OsTET13,OsTET10,OsTET2,OsTET4,OsTET6,OsTET9,OsTET14,OsTET8,OsTET12,OsTET5,OsTET11,OsTET15
42349	26697897	Zhang B., Wang X., Zhao Z., Wang R., Huang X., Zhu Y., Yuan L., Wang Y., Xu X., Burlingame A.L., Gao Y., Sun Y., Tang W.	OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation.	Plant Physiol.			2015	RLCK308,BRD1,RLCK98,D2,RLCK119,D61,RLCK173	OsRLCK308, OsBSK2, BSK2,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsRLCK119, OsBSK4, BSK4,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsRLCK173, OsBSK3, BSK3
42350	26712826	Wang C., Wang Y., Cheng Z., Zhao Z., Chen J., Sheng P., Yu Y., Ma W., Duan E., Wu F., Liu L., Qin R., Zhang X., Guo X., Wang J., Jiang L., Wan J.	The role of OsMSH4 in male and female gamete development in rice meiosis.	J. Exp. Bot.			2015	RPA1C,RPA1A,RPA2B,RPA2C,_,_	RPA1c, OsRPA1c,OsRPA70a, OsRPA1a, RPA1a,RPA2b, OsRPA2b,RPA2c, OsRPA2c,OsMSH4, MSH4,OsMSH5, MSH5
42351	26546447	Soundappan I., Bennett T., Morffy N., Liang Y., Stanga J.P., Abbas A., Leyser O., Nelson D.C.	SMAX1-LIKE/D53 Family Members Enable Distinct max2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.	Plant Cell	27(11)	3143-59	2015		
42352	26546446	Wang L., Wang B., Jiang L., Liu X., Li X., Lu Z., Meng X., Wang Y., Smith S.M., Li J.	Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.	Plant Cell	27(11)	3128-42	2015		
42353	26566920	Gupta Y.K., Dagdas Y.F., Martinez-Rocha AL., Kershaw M.J., Littlejohn G.R., Ryder L.S., Sklenar J., Menke F., Talbot N.J.	Septin-Dependent Assembly of the Exocyst Is Essential for Plant Infection by Magnaporthe oryzae.	Plant Cell	27(11)	3277-89	2015		
42354	26578814	Huang W., Yu C., Hu J., Wang L., Dan Z., Zhou W., He C., Zeng Y., Yao G., Qi J., Zhang Z., Zhu R., Chen X., Zhu Y.	Pentatricopeptide-repeat family protein Rf6 functions with hexokinase 6 to rescue rice cytoplasmic male sterility.	Proc. Natl. Acad. Sci. U.S.A.	112(48)	14984-9	2015	_,_,HXK6,_	atp6, N-atp6, B-ATP6, B-atp6, atp6-1,Rf6,OsHXK6,atp6-orfH79
42355	26554020	Li L., Zheng W., Zhu Y., Ye H., Tang B., Arendsee Z.W., Jones D., Li R., Ortiz D., Zhao X., Du C., Nettleton D., Scott M.P., Salas-Fernandez MG., Yin Y., Wurtele E.S.	QQS orphan gene regulates carbon and nitrogen partitioning across species via NF-YC interactions.	Proc. Natl. Acad. Sci. U.S.A.	112(47)	14734-9	2015	HAP5B,HAP5C,HAP5A	OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2
42356	26523777	Sosso D., Luo D., Li Q.B., Sasse J., Yang J., Gendrot G., Suzuki M., Koch K.E., McCarty D.R., Chourey P.S., Rogowsky P.M., Ross-Ibarra J., Yang B., Frommer W.B.	Seed filling in domesticated maize and rice depends on SWEET-mediated hexose transport.	Nat. Genet.	47(12)	1489-93	2015	SWEET4	OsSWEET4
42357	26621743	Zhang J., Liu Y., Xia E.H., Yao Q.Y., Liu X.D., Gao L.Z.	Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression.	Proc. Natl. Acad. Sci. U.S.A.	112(50)	E7022-9	2015		
42358	26546418	Mishra R.C., Richa, Singh A., Tiwari L.D., Grover A.	Characterization of 5'UTR of rice ClpB-C/Hsp100 gene: evidence of its involvement in post-transcriptional regulation.	Cell Stress Chaperones			2015	HSP101	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C
42359	26602233	Liu M., Lei L., Powers C., Liu Z., Campbell K.G., Chen X., Bowden R.L., Carver B.F., Yan L.	TaXA21-A1 on chromosome 5AL is associated with resistance to multiple pests in wheat.	Theor. Appl. Genet.			2015	_,_	Xa21, OsXA21, OsXA21-C11, XA21-C11,OsXA21-C9, XA21-C9
42360	26564152	Liu J., Zhang C., Wei C., Liu X., Wang M., Yu F., Xie Q., Tu J.	The RING Finger Ubiquitin E3 Ligase OsHTAS Enhances heat tolerance by Promoting H2O2-Induced Stomatal Closure in Rice.	Plant Physiol.	170(1)	429-43	2016	UBC5B,NCED3,_,_,HTAS,UBC5A,_	OsUBC5b, OsUBC15, UBC15,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,40SRPS,OsHTAS,OsUBC5a, OsUBC14, UBC14,S27a
42361	26579177	El-Kereamy A., Bi Y.M., Mahmood K., Ranathunge K., Yaish M.W., Nambara E., Rothstein S.J.	Overexpression of the CC-type glutaredoxin, OsGRX6 affects hormone and nitrogen status in rice plants.	Front Plant Sci	6	934	2015	RR4,IPT4,D18,IPT8,GRX6,GID2,IPT10,RR6,SD1,RR2,IPT7,EUI1,IPT9	rr4, OsRR4, Rra3, OsRRA3,OsIPT4,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsIPT8,OsGRX6, OsGrx_I1, Grx_I1,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsIPT10,OsRR6, rr6, Rra6, OsRRA6,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsIPT7,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsIPT9
42362	26542958	Kim S.K., Park H.Y., Jang Y.H., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.	OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.	Planta			2015	HAP3F,HAP3I,HD3A,SE1,_,HD5,HAP5B,EF1,GHD7,RFT1,HAP5C,HAP5D	OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6
42363	26617632	Li J., Qin R.Y., Li H., Xu R.F., Yang Y.C., Ni D.H., Ma H., Li L., Wei P.C., Yang J.B.	Low-Temperature-Induced Expression of rice ureidoglycolate amidohydrolase is Mediated by a C-Repeat/Dehydration-Responsive Element that Specifically Interacts with Rice C-Repeat-Binding Factor 3.	Front Plant Sci	6	1011	2015	UAH,DREB1A	OsUAH,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL
42364	26600124	Lv X.G., Shi Y.F., Xu X., Wei Y.L., Wang H.M., Zhang X.B., Wu J.L.	Oryza sativa Chloroplast Signal Recognition Particle 43 (OscpSRP43) Is Required for Chloroplast Development and Photosynthesis.	PLoS ONE	10(11)	e0143249	2015	YGL9	OscpSRP43, cpSRP43, PGL3
42365	26530963	Lee G.W., Chung M.S., Kang M., Chung B.Y., Lee S.	Direct suppression of a rice bacterial blight (Xanthomonas oryzae pv. oryzae) by monoterpene (S)-limonene.	Protoplasma			2015	_	OsTPS20, TPS20
42366	26607766	Shimono H., Abe A., Aoki N., Koumoto T., Sato M., Yokoi S., Kuroda E., Endo T., Saeki K.I., Nagano K.	Combining mapping of physiological quantitative trait loci and transcriptome for cold tolerance for counteracting male sterility induced by low temperatures during reproductive stage in rice.	Physiol Plant			2015	_,_,_	qCTR12 ,ZRP4,
42367	26612069	Lu Q., Zhang M., Niu X., Wang C., Xu Q., Feng Y., Wang S., Yuan X., Yu H., Wang Y., Wei X.	Uncovering novel loci for mesocotyl elongation and shoot length in indica rice through genome-wide association mapping.	Planta			2015	_,_,RR26,_	,,OsRR26, Rrb6, Orr6, OsRR16, OsRRB6,
42368	26563345	Xue G.P., Rae A.L., White R.G., Drenth J., Richardson T., McIntyre C.L.	A strong root-specific expression system for stable transgene expression in bread wheat.	Plant Cell Rep.			2015	_,_,_,_,PIP2;3,_,PR1-101	OsGRP7, GRP7,RCc2, RCg2, OsHyPRP13, HyP/GRP13, OsRCg2,OsMTL1, MTL1,OsRSP3, RSP3,OsPIP2;3, PIP2-3, OsPIP2-2,RCc3, OsHyPRP01, HyP/GRP01, OsHyPRP1, HyP/GRP1, OsRcc3,OsPR1#101, OsPR1-101, OsPR1L2, PR1L2
42369	26633564	Ramegowda V., Basu S., Gupta C., Pereira A.	Regulation of grain yield in rice under well-watered and drought stress conditions by GUDK.	Plant Signal Behav	10(11)	e1034421	2015	RLCK103,ERF3	GUDK, OsRLCK103,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2
42370	26598971	Zhao J., Qiu Z., Ruan B., Kang S., He L., Zhang S., Dong G., Hu J., Zeng D., Zhang G., Gao Z., Ren D., Hu X., Chen G., Guo L., Qian Q., Zhu L.	Functional Inactivation of Putative Photosynthetic Electron Acceptor Ferredoxin C2 (FdC2) Induces Delayed heading date and Decreased photosynthetic rate in Rice.	PLoS ONE	10(11)	e0143361	2015	UCL12,ZFP15,_,_,HDY1,_,LAC14,GSTU19,LAC3	OsUCL12,ZFP 15,,,OsFdC2, FdC2, OsHDY1,OsMyb11, Myb11, OsMYB60, MYB60,OsLAC14, OsLAC13, LAC13,OsGSTU19, GSTU6, OsGSTU6.1, GSTU6.1,OsChI1, ChI1, OsLAC3
42371	26475189	Yang J., Kim S.R., Lee S.K., Choi H., Jeon J.S., An G.	Alanine aminotransferase 1 (OsAlaAT1) plays an essential role in the regulation of starch storage in rice endosperm.	Plant Sci.	240	79-89	2015	ALAAT5,ALAAT2,_,ALK,AGPL3,SSI,ALAAT4,ALAAT3,ALAAT,AGPS1,AGPL2,AGPS2,FLO4	OsEnS-128, OsAlaAT5, AlaAT5,OsAlaAT2, AlaAT2,osppdka, ppdka,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1,OsSSI, SSS 1, SSS1, SS1,OsAlaAT4, AlaAT4,OsAlaAT3, AlaAT3,alaAT, ALT-1, OsAlaAT1, AlaAT1,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD
42372	26607171	Yadav A.K., Shankar A., Jha S.K., Kanwar P., Pandey A., Pandey G.K.	A rice tonoplastic calcium exchanger, OsCCX2 mediates Ca(2+)/cation transport in yeast.	Sci Rep	5	17117	2015	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
42373	26578743	Zhu J., Liang J., Xu Z., Fan X., Zhou Q., Shen Q., Xu G.	Root aeration improves growth and nitrogen accumulation in rice seedlings under low nitrogen.	AoB Plants	7		2015	NRT2.1,_,_,AMT1;1,_,AMT1;2,NAR2.1,_,NRT2.3,ACS5,AMT1;3	OsNRT2.1, OsNRT2.2,OsLSD1, OsLOL1, OsLSD1.1, LSD1.1, LSD1,PAD4, OsPAD4,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsPDCD5, PDCD5,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsNAR2.1, OsNRT3.1A,OsEDS1, EDS1,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsACS5, OS-ACS5, OsBphi008a,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
42374	26486445	Wu S., Xie Y., Zhang J., Ren Y., Zhang X., Wang J., Guo X., Wu F., Sheng P., Wang J., Wu C., Wang H., Huang S., Wan J.	VLN2 Regulates Plant Architecture by Affecting Microfilament Dynamics and Polar Auxin Transport in Rice.	Plant Cell	27(10)	2829-45	2015	_,_,_,_,_,LRA1	VLN5, OsVLN5, Os VLN5,VLN1, OsVLN1, Os VLN1,VLN4, OsVLN4, Os VLN4,VLN3, OsVLN3, Os VLN3,VLN2, OsVLN2, Os VLN2,OsPIN2, PIN2, OsLRA1
42375	26434724	Zhou Y., Miao J., Gu H., Peng X., Leburu M., Yuan F., Gu H., Gao Y., Tao Y., Zhu J., Gong Z., Yi C., Gu M., Yang Z., Liang G.	Natural Variations in SLG7 Regulate grain shape in Rice.	Genetics	201(4)	1591-9	2015	_,_,_	,GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7,
42376	26479032	Tao Y., Cheung L.S., Li S., Eom J.S., Chen L.Q., Xu Y., Perry K., Frommer W.B., Feng L.	Structure of a eukaryotic SWEET transporter in a homotrimeric complex.	Nature	527(7577)	259-63	2015	SWEET2B	OsSWEET2b, SWEET2b
42377	26486444	Farquharson K.L.	VILLIN2 Emerges as a Master Builder in Rice.	Plant Cell	27(10)	2675	2015	_,LRA1	VLN2, OsVLN2, Os VLN2,OsPIN2, PIN2, OsLRA1
42378	26519999	Srikanth B., Subhakara Rao I., Surekha K., Subrahmanyam D., Voleti S.R., Neeraja C.N.	Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions.	Gene	576(1 Pt 3)	441-50	2016	WFP	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
42379	26428067	Zou X., Qin Z., Zhang C., Liu B., Liu J., Zhang C., Lin C., Li H., Zhao T.	Over-expression of an S-domain receptor-like kinase extracellular domain improves panicle architecture and grain yield in rice.	J. Exp. Bot.			2015	GID2,D35,KO1,_	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsLSK1, LSK1
42380	26438231	Wei Y., Xu H., Diao L., Zhu Y., Xie H., Cai Q., Wu F., Wang Z., Zhang J., Xie H.	Protein repair l -isoaspartyl methyltransferase 1 (PIMT1) in rice improves seed longevity by preserving embryo vigor and viability.	Plant Mol. Biol.	89(4-5)	475-92	2015	PIMT1,PIMT2	OsPIMT1, OsPIMT1',OsPIMT2, OsPIMT2'-1, OsPIMT2'-2, deltaOsPIMT2
42381	26505346	Chen H., Lan H., Huang P., Zhang Y., Yuan X., Huang X., Huang J., Zhang H.	Characterization of OsPM19L1 encoding an AWPM-19-like family protein that is dramatically induced by osmotic stress in rice.	Genet. Mol. Res.	14(4)	11994-2005	2015	RAB16B,_,LTP2,_,RAB16D,LEA17,_,BZIP46,EM,_,RAB16A,_	rab21, OsLEA28, OsRAB16D, OsRAB16b,OsPM19L2,nsLTP2, OsLTP2.3, Ltp2, OsLTP2, RLTP2, OsLtpII.3,,rab21, OsLEA26, Rab16D, OsRab16,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsPM19L3,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,AWPM-19, PM19, OsPM1, OsPM19L1, PM1, PM19L1, OsAWPM-19, OsPM19,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsPM19L4
42382	26503287	Li Y., Yuan F., Wen Z., Li Y., Wang F., Zhu T., Zhuo W., Jin X., Wang Y., Zhao H., Pei Z.M., Han S.	Genome-wide survey and expression analysis of the OSCA gene family in rice.	BMC Plant Biol.	15	261	2015	OSCA4.1,OSCA2.2,OSCA1.3,OSCA2.5,ERD4,OSCA1.2,OSCA2.4,OSCA2.3,OSCA1.1,OSCA1.4,OSCA2.1	OsOSCA4.1, OsIOSCA4.1,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2,OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1,OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4,OsOSCA1.4 , OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1
42383	26473514	Schilling S., Gramzow L., Lobbes D., Kirbis A., Weilandt L., Hoffmeier A., Junker A., Weigelt-Fischer K., Klukas C., Wu F., Meng Z., Altmann T., Thei?en G.	Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).	Plant J.			2015	MADS31,MADS30,FST 	OsMADS31,OsMADS30,OsMADS29, MADS29, OsFST
42384	26537047	Su L., Shan J.X., Gao J.P., Lin H.X.	OsHAL3, a Blue Light responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.	Mol Plant			2015	RAP1B,_,HD3A,SE1	MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsHAL3, HAL3,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21
42385	26443376	Sakuraba Y., Piao W., Lim J.H., Han S.H., Kim Y.S., An G., Paek N.C.	Rice ONAC106 Inhibits leaf senescence and Increases Salt Tolerance and tiller angle.	Plant Cell Physiol.	56(12)	2325-39	2015	NAC5,BZIP23,EIL1,NAC106,_,SGR,DREB2A,LEA3-1,_,NYC1,NAC58	OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a,ONAC106,OsIDD14, LPA1 ,sgr(t), sgr, OsSGR, OsSgr,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsS3H, S3H, 2-ODD1, Os2-ODD1, 2ODD1, Os2ODD1,nyc1, OsNYC1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1
42386	26485146	Ueno Y., Yoshida R., Kishi-Kaboshi M., Matsushita A., Jiang C.J., Goto S., Takahashi A., Hirochika H., Takatsuji H.	Abiotic Stresses Antagonize the Rice Defence Pathway through the Tyrosine-Dephosphorylation of OsMPK6.	PLoS Pathog.	11(10)	e1005231	2015	MAPK6,_,WRKY45,_,MKK10-2	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsPP127, OsPTP1, PTP1,OsWRKY45,OsPTP2, PTP2,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMPKK10-2D, MPKK10-2D, MPKK10.2
42387	26491145	Li C., Shen H., Wang T., Wang X.	ABA Regulates Subcellular Redistribution of OsABI-LIKE2, a Negative Regulator in ABA Signaling, to Control Root Architecture and Drought Resistance in Oryza sativa.	Plant Cell Physiol.	56(12)	2396-408	2015	_,SAPK10,SAPK8,_,_,_	OsPP2C50, PP2C50, OsPP78, OsABIL3, ABIL3,OsSAPK10,OsSAPK8,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1,OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2
42388	26706074	Gan L., Wu H., Wu D., Zhang Z., Guo Z., Yang N., Xia K., Zhou X., Oh K., Matsuoka M., Ng D., Zhu C.	Methyl jasmonate inhibits lamina joint inclination by repressing brassinosteroid biosynthesis and signaling in rice.	Plant Sci.	241	238-45	2015	D2,XTH9,XTH2,ARF1,D61,BZR1,BU1,D11,BRD1	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsXTH9, OsXET9, XTH1, OsXTH1,OsXTH2, XTR1, OsXTR1,OsARF1, arf1, OsARF23, ARF23,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsBZR1, Os BZR1,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
42389	26706071	Lee D.K., Kim H.I., Jang G., Chung P.J., Jeong J.S., Kim Y.S., Bang S.W., Jung H., Choi Y.D., Kim J.K.	The NF-YA transcription factor OsNF-YA7 confers drought stress tolerance of rice in an abscisic acid independent manner.	Plant Sci.	241	199-210	2015	_,HAP2F,_,_,_,_,_,ENODL18,_,NEF1,HAP2I,_,_,_,_,_,_,ABCI10,_,_,BPH33,_,NRAMP6,_,STR6,HAP2D,_,_,HAP2B,RBBI2-1,_,ABCG17,_,HAP2J,DREB1C,_,HAP2H,HAP2A,WRKY62,RAB16C,_,_,_,_,_,_,FTSH6,_,_,_,_,HAP2E,HAP2G,_,_,_,HAP2C,_	,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,,,Os_F0757,,,OsENODL18, OsELA3, ELA3 ,,Os NEF1, OsNEF1,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,,,,,,,OsABCI10, OsABCI10_1, OsABCI10_2,,,OsDjC10, DjC10, Bph33(t), Bph33,,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6,,OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,SHR5,,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,RBBI2-1,,OsABCG17,,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,rab21, OsLEA27, rab16C,,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116 ,,,,,OsFtsH6, FtsH6,OsUGE1, OsUGE-1, UGE1, UGE-1,,,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,,IGPS,GPAT,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,
42390	26507552	Dixit S., Kumar Biswal A., Min A., Henry A., Oane R.H., Raorane M.L., Longkumer T., Pabuayon I.M., Mutte S.K., Vardarajan A.R., Miro B., Govindan G., Albano-Enriquez B., Pueffeld M., Sreenivasulu N., Slamet-Loedin I., Sundarvelpandian K., Tsai Y.C., Raghuvanshi S., Hsing Y.I., Kumar A., Kohli A.	Action of multiple intra-QTL genes concerted around a co-localized transcription factor underpins a large effect QTL.	Sci Rep	5	15183	2015	CRL4,RLCK368,_,_,CESA10,GDPD,ARF24,NAC139,_,_,_,SWEET13	CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsRLCK368, OsWAK, OsWAK125, WAK125,OsAH, AH,OsPOEI19, POEI19,OsCesA10, OsCESA10,OsGdpD, GdpD,OsARF24,ONAC139, OsNAM,OsEnS-150, OsDR, DR,OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S,OsABA45, ABA45, OsGDP, GDP,OsSWEET13, Xa25(t), Xa25, OsMtN3, Xa25/SWEET13, OsSWEET13/XA25
42391	26453745	Yoon D.H., Lee S.S., Park H.J., Lyu J.I., Chong W.S., Liu J.R., Kim B.G., Ahn J.C., Cho H.S.	Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa).	J. Exp. Bot.	67(1)	69-82	2016	CYP19-4,CYP20-1	OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,OsCYP20-1, OsCYP-17, OsCYP20-1a, OsCYP20-1b
42392	26526688	Mohanta T.K., Mohanta N., Parida P., Bae H.	Mitogen Activated Protein Kinase (MPK) Interacts With Auxin Influx Carrier (OsAux/LAX1) Involved in Auxin Signaling in Plant.	Biol Proced Online	17	13	2015	_,MSRMK2,MPK6,MAPK6	OsATL11, OsAux/LAX1, OSLAX1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMPK6, OsDR6, OsMPK4,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6
42393	26480952	Ma L., Li T., Hao C., Wang Y., Chen X., Zhang X.	TaGS5-3A, a grain size gene selected during wheat improvement for larger kernel and yield.	Plant Biotechnol. J.			2015		
42394	26435218	Qiu C.H., Li H., Li J., Qin R.Y., Xu R.F., Yang Y.C., Ma H., Song F.S., Li L., Wei P.C., Yang J.B.	Isolation and characterization of three cadmium-inducible promoters from Oryza sativa.	J. Biotechnol.	216	11-9	2015	GSTU5,GSTU37,HSP18.0	OsGSTU5,OsGSTU37,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
42395	26507364	Shang X.L., Xie R.R., Tian H., Wang Q.L., Guo F.Q.	A putative zeatin O-glucosyltransferase OscZOG1 regulates root and shoot development and formation of agronomic traits in rice.	J Integr Plant Biol			2015	_	OscZOG1, cZOG1
42396	26466818	Qi J., Li J., Han X., Li R., Wu J., Yu H., Hu L., Xiao Y., Lu J., Lou Y.	Jasmonic acid carboxyl methyltransferase regulates development and herbivory-induced defense response in rice.	J Integr Plant Biol			2015	JMT1	OsJMT1
42397	26482477	Duan Y.B., Li J., Qin R.Y., Xu R.F., Li H., Yang Y.C., Ma H., Li L., Wei P.C., Yang J.B.	Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.	Plant Mol. Biol.			2015	AP2/EREBP77,AP2/EREBP96,AP2/EREBP127,ERF106,AP2/EREBP129	AP2/EREBP#077, OsRAV1, RAV1,AP2/EREBP#096,AP2/EREBP#127,DERF7, OsDERF7, OsERF#106, OsERF106, AP2/EREBP#111, AP2/EREBP111,AP2/EREBP#129, OsRAV2, RAV2
42398	26483819	Gui J., Zheng S., Shen J., Li L.	Grain setting defect1 (GSD1) function in rice depends on S-acylation and interacts with actin 1 (OsACT1) at its C-terminal.	Front Plant Sci	6	804	2015	REM6.5,REM6.3,REM6.4,REM5.3,REM6.2,REM6.1,REM1.3,REM5.2,REM0.2,REM1.2,REM1.1,REM0.1,REM4.1,ACT1,REM4.2,REM5.1,REM4.3,REM1.5,REM1.4,GSD1	OsREM6.5,OsREM6.3,OsREM6.4,OsREM5.3,OsREM6.2,OsREM6.1,OsREM1.3,OsREM5.2,OsREM0.2,OsREM1.2,OsREM1.1,OsREM0.1,OsREM4.1,act1, AC1, RAC1, RAc1, ACT11, OsACT1,OsREM4.2,OsREM5.1,OsREM4.3,OsREM1.5,OsREM1.4,OsREM6.6, REM6.6, OsGSD1
42399	26483814	Lee S.S., Park H.J., Jung W.Y., Lee A., Yoon D.H., You Y.N., Kim H.S., Kim B.G., Ahn J.C., Cho H.S.	OsCYP21-4, a novel Golgi-resident cyclophilin, increases oxidative stress tolerance in rice.	Front Plant Sci	6	797	2015	CYP21-4	OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c
42400	26398804	Wang X., Zhou W., Lu Z., Ouyang Y., O CS., Yao J.	A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in rice.	Plant Sci.	239	200-8	2015	_	OsLTPL36, LTPL36
42401	26706069	Schmitz A.J., Begcy K., Sarath G., Walia H.	Rice Ovate Family Protein 2 (OFP2) alters hormonal homeostasis and vasculature development.	Plant Sci.	241	177-88	2015	LOG1,_,_,_,LOGL5,GA20OX7,_,_,_,HOS66,_	LOG1, LOG, Log, log,,OsOFP2, OsOFP03, OFP2,OsBIHD1, BIHD1,LOGL5,OsGA20ox7, ga20ox7, 2-ODD4, Os2-ODD4, 2ODD4, Os2ODD4,C4H2, OsC4H, OsC4HL, C4H,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,CCR1, OsCCR1, OsCCR14, CCR14 ,HB365, KNAT7,OsMYB42/85, MYB42/85
42402	26481009	Sun S.J., Qi G.N., Gao Q.F., Wang H.Q., Yao F.Y., Hussain J., Wang Y.F.	Protein kinase OsSAPK8 functions as an essential activator of S-type anion channel OsSLAC1, which is nitrate-selective in rice.	Planta			2015	SAPK8,SLAC1	OsSAPK8,OsSLAC1
42403	26426417	Hutin M., Sabot F., Ghesqui?re A., Koebnik R., Szurek B.	A knowledge-based molecular screen uncovers a broad spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.	Plant J.			2015	11N3	OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14
42404	26340989		Correction for Liu et al., Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice.	Proc. Natl. Acad. Sci. U.S.A.	112(39)	E5446	2015		
42405	26347131	Li X.C., Liao Y.Y., Leung D.W., Wang H.Y., Chen B.L., Peng X.X., Liu E.E.	Divergent biochemical and enzymatic properties of oxalate oxidase isoforms encoded by four similar genes in rice.	Phytochemistry	118	216-23	2015	OXO3,OXO2,OXO4,OXO1	OsOxO3, OsGLP3-5, GLP3-5,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4,OsOxO4, OsGLP3-6, GLP3-6,OsOxO1, OsGLP3-3, GLP3-3
42406	26358652	Xie W., Wang G., Yuan M., Yao W., Lyu K., Zhao H., Yang M., Li P., Zhang X., Yuan J., Wang Q., Liu F., Dong H., Zhang L., Li X., Meng X., Zhang W., Xiong L., He Y., Wang S., Yu S., Xu C., Luo J., Li X., Xiao J., Lian X., Zhang Q.	Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection.	Proc. Natl. Acad. Sci. U.S.A.	112(39)	E5411-9	2015		
42407	26362607	Oikawa T., Maeda H., Oguchi T., Yamaguchi T., Tanabe N., Ebana K., Yano M., Ebitani T., Izawa T.	The Birth of a Black Rice Gene and Its Local Spread by Introgression.	Plant Cell	27(9)	2401-14	2015	_,LAR,ANS,F3H3,F3H1,_,F3'H,_,F3H2,CHS,RD	OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, PKS8,OsLAR,ANS, OsANS1, ANS1, LDOX,OsF3H-3, F3H-3, OsF3H3,OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H,OsbHLH016, Kala4, OSB2,OsF3'H, OsCYP75B3, CYP75B3,UGT,OsF3H-2, F3H-2, OsF3H2,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,Rd, DFR, OsDFR, OS-DFR
42408	26423116	Chinpongpanich A., Phean-o-pas S., Thongchuang M., Qu L.J., Buaboocha T.	C-terminal extension of calmodulin-like 3 protein from Oryza sativa L.: interaction with a high mobility group target protein.	Acta Biochim. Biophys. Sin. (Shanghai)	47(11)	880-9	2015	CML3,_	OsCML3, OsSTA271, OsCML3m, OsCML3s,HMGB1, OsHMGB1
42409	26381316	Louren?o TF., Serra T.S., Cordeiro A.M., Swanson S.J., Gilroy S., Saibo N.J., Oliveira M.M.	The Rice E3-Ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.	Plant Physiol.	169(3)	2275-87	2015	EREBP1,RMC,ERF99,_	OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsRMC, OsRLK, OsDUF26, DUF26,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2,OsHOS1, HOS1
42410	26424158	Khong G.N., Pati P.K., Richaud F., Parizot B., Bidzinski P., Mai C.D., B?s M., Bourri? I., Meynard D., Beeckman T., Selvaraj M.G., Manabu I., Genga A.M., Brugidou C., Nang Do V., Guiderdoni E., Morel J.B., Gantet P.	OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.	Plant Physiol.	169(4)	2935-49	2015	WRKY28,CHT3,MADS26,_,NH1,POX22.3	OsWRKY28,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11,OsMADS26, FDRMADS3, RMADS220,PR5,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9
42411	26358044	Lim S.D., Jung C.G., Park Y.C., Lee S.C., Lee C., Lim C.W., Kim D.S., Jang C.S.	Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis.	Plant Mol. Biol.	89(4-5)	365-84	2015	RLCK305,BZIP60,_,_,SALT,EDA16,_,_,CPA1	OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,OsbZIP60, bZIP60,OsDH1, DH1,OsFKBP12, FKBP12,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,BRHIS1, OsEDA16,OsRMT1, RMT1,OsPB1, PB1,OsCPA1
42412	26337938	Zhang Y., Verhoeff N.I., Chen Z., Chen S., Wang M., Zhu Z., Ouwerkerk P.B.	Functions of OsDof25 in regulation of OsC4PPDK.	Plant Mol. Biol.	89(3)	229-42	2015	DOF13,DOF28,DOF29,DOF25,DOF24,DOF22,DOF21,DOF16,DOF17,DOF11,DOF14,RDD1,_,_,_,_,DOF7,_,DOF30,DOF4,RDD4,DOF6,SP3,RPBF,DOF18,RDD2,DOF27,RDD3,DOF20,DOF19	OsDof13, Dof13, OsDof-13,OsDof28, Dof28, OsDof-28 ,OsDof29, Dof29, OsDof-29 ,OsDof25, Dof25, OsDof-25 ,OsDof24, Dof24, OsDof-24,OsDof22, Dof22, OsDof-22,OsDof21, Dof21, OsDof-21, OsCDF2, CDF2 ,OsDof16, Dof16, OsDof-16,OsDof17, Dof17, OsDof-17 ,OsDof11, Dof11, OsDof-11 ,OsDof14, Dof14, OsDof-14 ,OsDof2, OsDof9, Dof9, OsDof-9 ,OsDof3, Dof3, OsDof-3,OsDof, OsDof2, Dof2, OsDof-2,OsDof5, Dof5, OsDof-5,OsDof1, Dof1, OsDof-1,OsDof7, Dof7, OsDof-7,OsDof4, Dof4, OsDof-4, Dof-4,OsDof30, Dof30, OsDof-30 ,OsDof4, OsDof8, Dof8, OsDof-8, DOF8,OsDof12, Dof12, OsDof-12, OsCDF1, OsCDF1/OsDOF12, OsDOF12, CDF1, DOF12,OsDof6, Dof6, OsDof-6,OsDof15, Dof15, OsDof-15, DOF15,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsDof18, Dof18, OsDof-18,OsDof23, Dof23, OsDof-23, OsDof1, OsCDF3, CDF3,OsDof27, Dof27, OsDof-27,OsDof26, Dof26, OsDof-26,OsDof20, Dof20, OsDof-20 ,OsDof19, Dof19, OsDof-19 
42413	26408146	Joshi R., Karan R., Singla-Pareek SL., Pareek A.	Ectopic expression of Pokkali Phosphoglycerate kinase-2 (OsPgk2-P) improves yield in tobacco plants under salinity stress.	Plant Cell Rep.			2015	PGK2,PGK4,PGK1,PGK3	OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP ,PGK, OsPGK4,OsPGK1,OsPGK3, OsPGK3a, OsPGK3b, OsPGK3c
42414	26186703	Fujisaki K., Abe Y., Ito A., Saitoh H., Yoshida K., Kanzaki H., Kanzaki E., Utsushi H., Yamashita T., Kamoun S., Terauchi R.	Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity.	Plant J.	83(5)	875-87	2015	EXO70F2,EXO70F3,_	OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,Pii
42415	26394329	Zhang B., Xu M., Bian S., Hou L., Tang D., Li Y., Gu M., Cheng Z., Yu H.	Global Identification of Genes Specific for Rice Meiosis.	PLoS ONE	10(9)	e0137399	2015	_,_,_,_,_,_,MSRMK2,_,_,PSS1,_,_,_,ORC4,_,_,_,_,_,_,_,_,_,PP2A-A,CDC45-1,_,_,_,_,CDC2-1,_,GID2,SYP121,_,_	OsPP44, PP44,OsPP47, PP47,sudA,,OsAM1, SWI1, Osam1, AM1,,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsZIP4, ZIP4, SPO22,MSH3,pss1, OsPSS1,OsPP56, PP56, OsPP2Ac-2, PP2Ac-2,OsWD40-51, OsCDC20.1, WD40-51, CDC20.1,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,OsORC4,OsRPA14, RPA14, RPA3,APC7, OsAPC7,OsEXO1, OsExo1, EXO1,OSK21,OsMSH5, MSH5,HEI10, HEI10A, HEI10B, OsHEI10,RAD23,,APC5, OsAPC5,PP2A-A, RPA1,CDC45, OsCDC45, CDC45A,,,OsCAT4, CAT4,OsSNDP5, SNDP5,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsSYP121,DRD1,APC10 
42416	26359114	Li J., Xiang C.Y., Yang J., Chen J.P., Zhang H.M.	Interaction of HSP20 with a viral RdRp changes its sub-cellular localization and distribution pattern in plants.	Sci Rep	5	14016	2015	HSP18.0	OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6
42417	26362328	Tian X., Wang Z., Li X., Lv T., Liu H., Wang L., Niu H., Bu Q.	Characterization and Functional Analysis of Pyrabactin Resistance-Like Abscisic Acid Receptor Family in Rice.	Rice (N Y)	8(1)	28	2015	_,_,_,_,_,_,_,_,LEA3-1,RAB16A,_,_,_,_,_,_,_,PP2C1,_,_,_	OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2,OsEnS-89, OsPYL13, PYL13,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1,OsPYL12, PYL12, OsPYL11, PYL11,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsABA45, ABA45, OsGDP, GDP,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsPP2C51, PP2C51, OsPP79,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,OsPP2C08, PP2C08, OsPP2C8, PP2C8, OsPP12,OsPP2C30, PP2C30, OsPP48, PP48,OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108,OsPYL7, PYL7, OsPYL12,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1
42418	26442000	Nuruzzaman M., Sharoni A.M., Satoh K., Karim M.R., Harikrishna J.A., Shimizu T., Sasaya T., Omura T., Haque M.A., Hasan S.M., Ahmad A., Kikuchi S.	NAC transcription factor family genes are differentially expressed in rice during infections with Rice dwarf virus, Rice black-streaked dwarf virus, Rice grassy stunt virus, Rice ragged stunt virus, and Rice transitory yellowing virus.	Front Plant Sci	6	676	2015	NAC55,NAC123,NAC103,NAC131,NAC121,ONAC300,NAC96,BET1,NAC10,NAC17,NAC122,NAC85	ONAC055, ONAC55,ONAC123, N77,ONAC103, OsNAC18 , NAC18,ONAC131,ONAC121,ONAC077, NAC77, NAC300, ONAC132, NAC132,NAC94, ONAC096, ONAC96, NAC4, OsNAC4,BET1, ONAC081, ONAC81, NAC81,ONAC010, ONAC10, OsSTA199,ONAC017, ONAC17, ONAC030, ONAC30, OsNAC111,OsNAC10, NAC10, ONAC122, NAC122,ONAC085, ONAC85
42419	26400148	Wang X., Zhang M.M., Wang Y.J., Gao Y.T., Li R., Wang G.F., Li W.Q., Liu W.T., Chen K.M.	The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice.	Physiol Plant			2015	GSTU17,_,RBOHA,_,_,_,GSTU8,RPBF,RLCK267,_,_,_,GSTU19,_	OsGSTU17, OsGST23, GST23 ,OsmtATPS1, mtATPS1,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2,OsRTPP1, RTPP1 ,OsSLPP1, SLPP1 ,OsRPK3, RPK3,OsGSTU8, OsGST35, GST35,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsRLCK267, OsRPK1, RPK1,OsTPP2, TPP2,OsRPP14.1, RPP14.1,OsTPP1, TPP1 ,OsGSTU19, GSTU6, OsGSTU6.1, GSTU6.1,OsRPK2, RPK2
42420	26414948	Manuka R., Saddhe A.A., Kumar K.	Genome-wide identification and expression analysis of WNK kinase gene family in rice.	Comput Biol Chem	59 Pt A	56-66	2015	WNK8,WNK3,WNK2,WNK5,WNK4,WNK6,WNK7,WNK1,WNK9	OsWNK8,OsWNK3,OsWNK2,OsWNK5,OsWNK4,OsWNK6,OsWNK7,OsWNK1,OsWNK9
42421	26401987	Rai A., Singh R., Shirke P.A., Tripathi R.D., Trivedi P.K., Chakrabarty D.	Expression of Rice CYP450-Like Gene (Os08g01480) in Arabidopsis Modulates Regulatory Network Leading to Heavy Metal and Other Abiotic Stress Tolerance.	PLoS ONE	10(9)	e0138574	2015	_	
42422	26350069	Karmakar S., Molla K.A., Chanda P.K., Sarkar S.N., Datta S.K., Datta K.	Green tissue-specific co-expression of chitinase and oxalate oxidase 4 genes in rice for enhanced resistance against sheath blight.	Planta	243(1)	115-130	2016	PR10A,CHT1,PR1B,CHT3,PAL1,OXO4	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsOxO4, OsGLP3-6, GLP3-6
42423	26350403	Ye Y., Liu B., Zhao M., Wu K., Cheng W., Chen X., Liu Q., Liu Z., Fu X., Wu Y.	CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.	Plant Mol. Biol.	89(4-5)	385-401	2015	_,CESA7,_,BC7,NAC62,SLR1,CEF1,BC1,BC6	OsMYB42/85, MYB42/85,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsMYB52, OsMYB52/54,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,ONAC062, ONAC62, OsSND2, SND2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L,bc1, bc-1, OsBC1, CWA1, FP1,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88
42424	26442027	Kaur H., Petla B.P., Kamble N.U., Singh A., Rao V., Salvi P., Ghosh S., Majee M.	Differentially expressed seed aging responsive heat shock protein OsHSP18.2 implicates in seed vigor, longevity and improves germination and seedling establishment under abiotic stress.	Front Plant Sci	6	713	2015	HSP18.0-CII	OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2
42425	26687131	Ruiz C., Pla M., Company N., Riudavets J., Nadal A.	High CO2 concentration as an inductor agent to drive production of recombinant phytotoxic antimicrobial peptides in plant biofactories.	Plant Mol. Biol.			2015		
42426	26689934	Biselli C., Bagnaresi P., Cavalluzzo D., Urso S., Desiderio F., Orasen G., Gianinetti A., Righettini F., Gennaro M., Perrini R., Ben Hassen M., Sacchi G.A., Cattivelli L., Val? G.	Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits.	BMC Genomics	16(1)	1091	2015		
42427	26713549	Wu T., Yang C., Ding B., Feng Z., Wang Q., He J., Tong J., Xiao L., Jiang L., Wan J.	Microarray-based gene expression analysis of strong seed dormancy in rice cv. N22 and less dormant mutant derivatives.	Plant Physiol. Biochem.	99	27-38	2015		
42428	26719746	Orn C., Shishido R., Akimoto M., Ishikawa R., Htun T.M., Nonomura K., Koide Y., Sarom M., Vang S., Sophany S., Makara O., Ishii T.	Evaluation of genetic variation among wild rice populations in Cambodia.	Breed. Sci.	65(5)	430-7	2015		
42429	26660729	Kanizay L., Jacobs T., Hancock C.N.	A transgenic, visual screenable marker for soybean seeds.	Transgenic Res.			2015		
42430	26639303	Liu B., Wei G., Shi J., Jin J., Shen T., Ni T., Shen W.H., Yu Y., Dong A.	SET DOMAIN GROUP 708, a histone H3 lysine 36-specific methyltransferase, controls flowering time in rice (Oryza sativa).	New Phytol.			2015		
42431	26643073	Yeh S.Y., Chen H.W., Ng C.Y., Lin C.Y., Tseng T.H., Li W.H., Ku M.S.	Down-Regulation of Cytokinin Oxidase 2 Expression Increases tiller number and Improves Rice Yield.	Rice (N Y)	8(1)	36	2015		
42432	26685666	Wang X., Cheng Z., Zhao Z., Gan L., Qin R., Zhou K., Ma W., Zhang B., Wang J., Zhai H., Wan J.	BRITTLE SHEATH1 encoding OsCYP96B4 is involved in secondary cell wall formation in rice.	Plant Cell Rep.			2015		
42433	26668331	Nishizawa-Yokoi A., Cermak T., Hoshino T., Sugimoto K., Saika H., Mori A., Osakabe K., Hamada M., Katayose Y., Starker C., Voytas D.F., Toki S.	A defect in DNA ligase 4 enhances the frequency of TALEN-mediated targeted mutagenesis in rice.	Plant Physiol.			2015		
42434	26642184	Waqas M., Khan A.L., Shahzad R., Ullah I., Khan A.R., Lee I.J.	Mutualistic fungal endophytes produce phytohormones and organic acids that promote japonica rice plant growth under prolonged heat stress.	J Zhejiang Univ Sci B	16(12)	1011-8	2015		
42435	26655677	Timabud T., Yin X., Pongdontri P., Komatsu S.	Gel-free/label-free proteomic analysis of developing rice grains under heat stress.	J Proteomics	133	1-19	2015		
42436	26685185	Huang J., Wijeratne A.J., Tang C., Zhang T., Fenelon R.E., Owen H.A., Zhao D.	Ectopic expression of TAPETUM DETERMINANT1 affects ovule development in Arabidopsis.	J. Exp. Bot.			2015		
42437	26719053	Wang Y., Lu W., Deng D.	Bioinformatic landscapes for plant transcription factor system research.	Planta			2015		
42438	26054239	Ruengphayak S., Ruanjaichon V., Saensuk C., Phromphan S., Tragoonrung S., Kongkachuichai R., Vanavichit A.	Forward screening for seedling tolerance to Fe toxicity reveals a polymorphic mutation in ferric chelate reductase in rice.	Rice (N Y)	8(1)	36	2015		
42439	26663822	Ebel C., Hanin M.	Maintenance of meristem activity under stress: is there an interplay of RSS1-like proteins with the RBR pathway ?	Plant Biol (Stuttg)			2015		
42440	26697049	Egusa M., Matsui H., Urakami T., Okuda S., Ifuku S., Nakagami H., Kaminaka H.	chitin nanofiber Elucidates the Elicitor Activity of Polymeric Chitin in Plants.	Front Plant Sci	6	1098	2015		
42441	26634524	Li W.C., Wang J., Sun Y.L., Ji S.D., Guo S.W.	Morphology and photosynthetic enzyme activity of maize phosphoenolpyruvate carboxylase transgenic rice.	Genet. Mol. Res.	14(4)	15572-6	2015		
42442	26677125	Wang J., Xu H., Li N., Fan F., Wang L., Zhu Y., Li S.	Artificial Selection of Gn1a Plays an Important role in Improving Rice Yields Across Different Ecological Regions.	Rice (N Y)	8(1)	37	2015		
42443	26054238	Hu H., Wang J., Shi C., Yuan C., Peng C., Yin J., Li W., He M., Wang J., Ma B., Wang Y., Li S., Chen X.	A receptor like kinase gene with expressional responsiveness on Xanthomonas oryzae pv. oryzae is essential for Xa21-mediated disease resistance.	Rice (N Y)	8(1)	34	2015		
42444	26633387	Zhang G., Wang F., Li J., Ding Q., Zhang Y., Li H., Zhang J., Gao J.	Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp. Pekinensis).	Int J Mol Sci	16(12)	28683-704	2015		
42445	26714258	Qiu X., Pang Y., Yuan Z., Xing D., Xu J., Dingkuhn M., Li Z., Ye G.	Genome-Wide Association Study of Grain Appearance and Milling Quality in a Worldwide Collection of Indica Rice Germplasm.	PLoS ONE	10(12)	e0145577	2015		
42446	26641488	Petrova A., Smith C.M.	Application of Brown Planthopper Salivary Gland Extract to Rice Plants Induces Systemic Host mRNA Patterns Associated with Nutrient Remobilization.	PLoS ONE	10(12)	e0141769	2015		
42447	26688693	Roffler S., Menardo F., Wicker T.	The making of a genomic parasite - the Mothra family sheds light on the evolution of Helitrons in plants.	Mob DNA	6	23	2015		
42448	26714321	Yang J., Chen X., Zhu C., Peng X., He X., Fu J., Ouyang L., Bian J., Hu L., Sun X., Xu J., He H.	Using RNA-seq to Profile Gene Expression of Spikelet Development in Response to Temperature and Nitrogen during Meiosis in Rice (Oryza sativa L.).	PLoS ONE	10(12)	e0145532	2015		
42449	26633389	Zhang W., Yang L., Li M., Ma B., Yan C., Chen J.	Omics-Based Comparative Transcriptional Profiling of Two Contrasting Rice Genotypes during Early Infestation by Small Brown Planthopper.	Int J Mol Sci	16(12)	28746-64	2015		
42450	26708605	Matsuda S., Takano S., Sato M., Furukawa K., Nagasawa H., Yoshikawa S., Kasuga J., Tokuji Y., Yazaki K., Nakazono M., Takamure I., Kato K.	Rice stomatal closure requires guard cell plasma membrane ATP-binding cassette transporter RCN1/OsABCG5.	Mol Plant			2015		
42451	26054242	Calingacion M., Fang L., Quiatchon-Baeza L., Mumm R., Riedel A., Hall R.D., Fitzgerald M.	Delving deeper into technological innovations to understand differences in rice quality.	Rice (N Y)	8(1)	43	2015		
42452	26687860	Yin H., Akimoto M., Kaewcheenchai R., Sotowa M., Ishii T., Ishikawa R.	Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.	Genes Genet. Syst.			2015		
42453	26674966	Min H.J., Jung Y.J., Kang B.G., Kim W.T.	CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).	Mol. Cells			2015		
42454	26668334	Endo M., Mikami M., Toki S.	Bi-allelic gene targeting in rice.	Plant Physiol.			2015		
42455	26689769	Cheng S., Zhou D.X., Zhao Y.	WUSCHEL-related homeobox gene WOX11 increases rice drought resistance by controlling root hair formation and root system development.	Plant Signal Behav		0	2015		
42456	26713754	Zhao X., Zhang G., Wang Y., Zhang F., Wang W., Zhang W., Fu B., Xu J., Li Z.	Metabolic Profiling and Physiological Analysis of a Novel Rice Introgression Line with Broad Leaf Size.	PLoS ONE	10(12)	e0145646	2015		
42457	26713764	Zhu Y., Chen K., Mi X., Chen T., Ali J., Ye G., Xu J., Li Z.	Identification and Fine Mapping of a Stably Expressed QTL for Cold Tolerance at the Booting Stage Using an Interconnected Breeding Population in Rice.	PLoS ONE	10(12)	e0145704	2015		
42458	26648962	Spence C.A., Lakshmanan V., Donofrio N., Bais H.P.	Crucial Roles of Abscisic Acid Biogenesis in Virulence of Rice Blast Fungus Magnaporthe oryzae.	Front Plant Sci	6	1082	2015		
42459	26708765	Xu X., Zhao J., Li Y., Fan Y., Zhu N., Gao Y., Li B., Liu H., Li Y.F.	Demethylation of methylmercury in growing rice plants: An evidence of self-detoxification.	Environ. Pollut.	210	113-120	2015		
42460	26696397	Banik A., Mukhopadhaya S.K., Dangar T.K.	Characterization of N2-fixing plant growth promoting endophytic and epiphytic bacterial community of Indian cultivated and wild rice (Oryza spp.) genotypes.	Planta			2015		
42461	26719738	Shimosaka E., Ozawa K.	Overexpression of cold-inducible wheat Galactinol synthase confers tolerance to chilling stress in transgenic rice.	Breed. Sci.	65(5)	363-71	2015		
42462	26671655	Chakravarthi M., Syamaladevi D.P., Harunipriya P., Augustine S.M., Subramonian N.	A novel PR10 promoter from Erianthus arundinaceus directs high constitutive transgene expression and is enhanced upon wounding in heterologous plant systems.	Mol. Biol. Rep.			2015		
42463	26715311	Moumeni A., Satoh K., Venuprasad R., Serraj R., Kumar A., Leung H., Kikuchi S.	Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit.	BMC Genomics	16(1)	1110	2015		
42464	26626493	Travis A.J., Norton G.J., Datta S., Sarma R., Dasgupta T., Savio F.L., Macaulay M., Hedley P.E., McNally K.L., Sumon M.H., Islam M.R., Price A.H.	Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal.	Rice (N Y)	8(1)	35	2015		
42465	26648960	Lin C., Hara A., Comparini D., Bouteau F., Kawano T.	Zinc-Dependent Protection of Tobacco and Rice Cells From Aluminum-Induced Superoxide-Mediated Cytotoxicity.	Front Plant Sci	6	1079	2015		
42466	26710230	Sekhar S., Gharat S.A., Panda B.B., Mohaptra T., Das K., Kariali E., Mohapatra P.K., Shaw B.P.	Identification and Characterization of Differentially Expressed Genes in Inferior and Superior Spikelets of Rice Cultivars with Contrasting Panicle-Compactness and Grain-Filling Properties.	PLoS ONE	10(12)	e0145749	2015		
42467	26659593	Xiao G., Qin H., Zhou J., Quan R., Lu X., Huang R., Zhang H.	OsERF2 controls rice root growth and hormone responses through tuning expression of key genes involved in hormone signaling and sucrose metabolism.	Plant Mol. Biol.			2015		
42468	26700579	Zhou Y., Yin H., Li J., Li B., Li X., Ai S., Zhang X.	Electrochemical biosensor for microRNA detection based on poly(U) polymerase mediated isothermal signal amplification.	Biosens Bioelectron	79	79-85	2015		
42469	26719745	Van Mai T., Fujita D., Matsumura M., Yoshimura A., Yasui H.	Genetic basis of multiple resistance to the brown planthopper (Nilaparvata lugens St?l) and the green rice leafhopper (Nephotettix cincticeps Uhler) in the rice cultivar 'ASD7' (Oryza sativa L. ssp. indica).	Breed. Sci.	65(5)	420-9	2015		
42470	26714456	Gharat S.A., Shaw B.P.	Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs of two mangrove plants.	BMC Plant Biol.	15(1)	301	2015		
42471	26650613	Oldenburg D.J., Bendich A.J.	The linear plastid chromosomes of maize: terminal sequences, structures, and implications for DNA replication.	Curr. Genet.			2015		
42472	26641666	Ma L., Zhu F., Li Z., Zhang J., Li X., Dong J., Wang T.	TALEN-Based Mutagenesis of Lipoxygenase LOX3 Enhances the Storage Tolerance of Rice (Oryza sativa) Seeds.	PLoS ONE	10(12)	e0143877	2015		
42473	26655679	Wang R., Zhu M., Ye R., Liu Z., Zhou F., Chen H., Lin Y.	Novel green tissue-specific synthetic promoters and cis-regulatory elements in rice.	Sci Rep	5	18256	2015		
42474	26717118	Foo J.L., Susanto A.V., Keasling J.D., Leong S.S., Chang M.W.	Whole-cell biocatalytic and de novo production of alkanes from free fatty acids in Saccharomyces cerevisiae.	Biotechnol. Bioeng.			2015		
42475	26054240	Zhang B., Ye W., Ren D., Tian P., Peng Y., Gao Y., Ruan B., Wang L., Zhang G., Guo L., Qian Q., Gao Z.	Genetic analysis of flag leaf size and candidate genes determination of a major QTL for flag leaf width in rice.	Rice (N Y)	8(1)	39	2015		
42476	26646110	Hou Y., Wang L., Wang L., Liu L., Li L., Sun L., Rao Q., Zhang J., Huang S.	JMJ704 positively regulates rice defense response against Xanthomonas oryzae pv. oryzae infection via reducing H3K4me2/3 associated with negative disease resistance regulators.	BMC Plant Biol.	15	286	2015		
42477	26714735	Zhang L., Liu G., Jia J., Zhao G., Xia C., Zhang L., Li F., Zhang Q., Dong C., Gao S., Han L., Guo X., Zhang X., Wu J., Liu X., Kong X.	The wheat MYB-related transcription factor TaMYB72 promotes flowering in rice.	J Integr Plant Biol			2015		
42478	26631017	Vinnakota R., Ramakrishnan A.M., Samdani A., Venugopal M.A., Ram B.S., Krishnan S.N., Murugesan D., Sankaranarayanan K.	A comparison of aquaporin function in mediating stomatal aperture gating among drought-tolerant and sensitive varieties of rice (Oryza sativa L.).	Protoplasma			2015		
42479	26697896	An G., Yi J., Moon S., Lee Y.S., Zhu L., Liang W., Zhang D.B., Jung K.H.	Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.	Plant Physiol.			2015	CP1,AP37 ,_,CYP704B2,MTI4C,OSC6,DTC1,MT2B	OsCP1, Os CP1,OsAP37,OsAP25, Radc1, AP25,OsCYP704B2,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
42480	26644084	Huang S., Chen S., Liang Z., Zhang C., Yan M., Chen J., Xu G., Fan X., Zhang Y.	Knockdown of the partner protein OsNAR2.1 for high-affinity nitrate transport represses lateral root formation in a nitrate-dependent manner.	Sci Rep	5	18192	2015		
42481	26719744	Lin Q., Wang W., Ren Y., Jiang Y., Sun A., Qian Y., Zhang Y., He N., Hang N.T., Liu Z., Li L., Liu L., Jiang L., Wan J.	Genetic dissection of seed storability using two different populations with a same parent rice cultivar N22.	Breed. Sci.	65(5)	411-9	2015		
42482	26679839	Zhou Z., Pang Z., Li G., Lin C., Wang J., Lv Q., He C., Zhu L.	Endoplasmic reticulum membrane-bound MoSec62 is involved in suppression of rice immunity and is essential for pathogenicity of Magnaporthe oryzae.	Mol. Plant Pathol.			2015		
42483	26646386	Wongpia A., Roytrakul S., Nomura M., Tajima S., Lomthaisong K., Mahatheeranont S., Niamsup H.	Proteomic Analysis of Isogenic Rice Reveals Proteins Correlated with Aroma Compound Biosynthesis at Different Developmental Stages.	Mol. Biotechnol.			2015		
42484	26667653	Buffon G., Blasi ?A., Adamski J.M., Ferla N.J., Berger M., Santi L., Lavall?e-Adam M., Yates J.R., Beys-da-Silva WO., Sperotto R.A.	Physiological and Molecular Alterations Promoted by Schizotetranychus oryzae Mite Infestation in Rice Leaves.	J. Proteome Res.			2015		
42485	26657562	Guo L., Liu C.M.	A single-nucleotide exon found in Arabidopsis.	Sci Rep	5	18087	2015		
42486	26704419	Mi J., Li G., Huang J., Yu H., Zhou F., Zhang Q., Ouyang Y., Mou T.	Stacking S5-n and f5-n to overcome sterility in indica-japonica hybrid rice.	Theor. Appl. Genet.			2015		
42487	26681058	Naeem M., Ghouri F., Shahid M.Q., Iqbal M., S Baloch F., Chen L., Allah S., Babar M., Rana M.	Genetic diversity in mutated and non-mutated rice varieties.	Genet. Mol. Res.	14(4)	17109-23	2015		
42488	26467468	Liu Q., Yang J., Zhang S., Zhao J., Feng A., Yang T., Wang X., Mao X., Dong J., Zhu X., Leung H., Leach J.E., Liu B.	OsGF14b Positively Regulates Panicle Blast Resistance but Negatively Regulates Leaf Blast Resistance in Rice.	Mol. Plant Microbe Interact.		MPMI03150047R	2015		
42489	26640944	He B., Tao X., Gu Y., Wei C., Cheng X., Xiao S., Cheng Z., Zhang Y.	Transcriptomic Analysis and the Expression of Disease-Resistant Genes in Oryza meyeriana under Native Condition.	PLoS ONE	10(12)	e0144518	2015		
42490	26690414	He B., Gu Y., Tao X., Cheng X., Wei C., Fu J., Cheng Z., Zhang Y.	De Novo Transcriptome Sequencing of Oryza officinalis Wall ex Watt to Identify disease-resistance Genes.	Int J Mol Sci	16(12)	29482-95	2015		
42491	26686058	Cai F., Ren J., Tao S., Wang X.	Uptake, translocation and transformation of antimony in rice (Oryza sativa L.) seedlings.	Environ. Pollut.	209	169-76	2016		
42492	26673149	Lu Q., Zhang M., Niu X., Wang S., Xu Q., Feng Y., Wang C., Deng H., Yuan X., Yu H., Wang Y., Wei X.	Genetic variation and association mapping for 12 agronomic traits in indica rice.	BMC Genomics	16(1)	1067	2015		
42493	26689479	Imamura T., Sekine K.T., Yamashita T., Kusano H., Shimada H.	Production of recombinant thanatin in watery rice seeds that lack an accumulation of storage starch and proteins.	J. Biotechnol.			2015		
42494	26709310	Yang Y., Xu J., Huang L., Leng Y., Dai L., Rao Y., Chen L., Wang Y., Tu Z., Hu J., Ren D., Zhang G., Zhu L., Guo L., Qian Q., Zeng D.	PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.	J. Exp. Bot.			2015	RCCR1,_,YGL1,_,CATB,_,YGL10,_,_,NYC1,FGL,APX1,_,_,_,NYC4,NOL,APX2,NYC3	OsRCCR1, OsRCCR, RCCR,OsPorA, PORA, OsPORA,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsChlH, ChlH, CHLH, OsCHLH,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsPAO, PAO,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsDVR, DVR,nyc1, OsNYC1,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,Osh36, OsH36, H36, OsAMTR1, AMTR1,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,prx16, OsPOD1, POD1,OsNYC4,nol, NOL1, OsNOL, OsNOL1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,nyc3, OsNYC3, PPH
42495	26697348	Reddy M.M., Ulaganathan K.	RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226.	Genom Data	6	112-3	2015		
42496	26719743	Fujino K., Obara M., Shimizu T., Koyanagi K.O., Ikegaya T.	Genome-wide association mapping focusing on a rice population derived from rice breeding programs in a region.	Breed. Sci.	65(5)	403-10	2015		
42497	26555942	Xu H., Bao J.D., Dai J.S., Li Y., Zhu Y.	Genome-Wide Identification of New Reference Genes for qRT-PCR Normalization under High Temperature Stress in Rice Endosperm.	PLoS ONE	10(11)	e0142015	2015		
42498	26607788	Qu G., Kruszka K., Plewka P., Yang S.Y., Chiou T.J., Jarmolowski A., Szweykowska-Kulinska Z., Echeverria M., Karlowski W.M.	Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana.	BMC Genomics	16(1)	1009	2015		
42499	26635829	Basak J., Nithin C.	Targeting Non-Coding RNAs in Plants with the CRISPR-Cas Technology is a Challenge yet Worth Accepting.	Front Plant Sci	6	1001	2015		
42500	26585422	Zhao W., Yang P., Kang L., Cui F.	Different pathogenicities of Rice stripe virus from the insect vector and from viruliferous plants.	New Phytol.			2015		
42501	26600014	Islam T., Manna M., Reddy M.K.	glutathione Peroxidase of Pennisetum glaucum (PgGPx) Is a Functional Cd2+ Dependent Peroxiredoxin that Enhances Tolerance against Salinity and Drought Stress.	PLoS ONE	10(11)	e0143344	2015		
42502	26545757	Celi?ska E., Borkowska M., Bia?as W.	Evaluation of a recombinant insect-derived amylase performance in simultaneous saccharification and fermentation process with industrial yeasts.	Appl. Microbiol. Biotechnol.			2015		
42503	26528551	Meng Z., Meng Z., Zhang R., Liang C., Wan J., Wang Y., Zhai H., Guo S.	Expression of the Rice Arginase Gene OsARG in Cotton Influences the Morphology and Nitrogen Transition of Seedlings.	PLoS ONE	10(11)	e0141530	2015		
42504	26606179	Dubey A.K., Kumar N., Sahu N., Verma P.K., Chakrabarty D., Behera S.K., Mallick S.	Response of two rice cultivars differing in their sensitivity towards arsenic, differs in their expression of glutaredoxin and glutathione S transferase genes and antioxidant usage.	Ecotoxicol. Environ. Saf.	124	393-405	2016		
42505	26615033	Wang H., Sun R., Cao Y., Pei W., Sun Y., Zhou H., Wu X., Zhang F., Luo L., Shen Q., Xu G., Sun S.	OsSIZ1, a SUMO E3 Ligase Gene, is Involved in the Regulation of the Responses to Phosphate and Nitrogen in Rice.	Plant Cell Physiol.	56(12)	2381-95	2015		
42506	26608643	Zhang L., Ren Y., Lu B., Yang C., Feng Z., Liu Z., Chen J., Ma W., Wang Y., Yu X., Wang Y., Zhang W., Wang Y., Liu S., Wu F., Zhang X., Guo X., Bao Y., Jiang L., Wan J.	FLOURY ENDOSPERM7 encodes a regulator of starch synthesis and amyloplast development essential for peripheral endosperm development in rice.	J. Exp. Bot.			2015		
42507	26646900	Lu L., Chen X., Sanders D., Qian S., Zhong X.	High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns in Arabidopsis and rice.	Epigenetics	10(11)	1044-53	2015		
42508	26615032	Yamaoka C., Suzuki Y., Makino A.	Differential Expression of Genes of the Calvin-Benson Cycle and its Related Genes During Leaf Development in Rice.	Plant Cell Physiol.			2015		
42509	26600547	Yang Y.C., Kung T.L., Hu C.Y., Lin S.F.	Development of primer pairs from diverse chloroplast genomes for use in plant phylogenetic research.	Genet. Mol. Res.	14(4)	14857-70	2015		
42510	26687010	Nath M., Yadav S., Kumar Sahoo R., Passricha N., Tuteja R., Tuteja N.	PDH45 transgenic rice maintain cell viability through lower accumulation of Na(+), ROS and calcium homeostasis in roots under salinity stress.	J. Plant Physiol.	191	1-11	2015		
42511	26574735	Kang H., Wang Y., Peng S., Zhang Y., Xiao Y., Wang D., Qu S., Li Z., Yan S., Wang Z., Liu W., Ning Y., Korniliev P., Leung H., Mezey J., McCouch S.R., Wang G.L.	Dissection of the genetic architecture of rice resistance to the blast fungus Magnaporthe oryzae.	Mol. Plant Pathol.			2015		
42512	26578190	Suzuki K., Costa A., Nakayama H., Katsuhara M., Shinmyo A., Horie T.	OsHKT2;2/1-mediated Na(+) influx over K(+) uptake in roots potentially increases toxic Na(+) accumulation in a salt-tolerant landrace of rice Nona Bokra upon salinity stress.	J. Plant Res.			2015		
42513	26613898	Qiu J., Hou Y., Tong X., Wang Y., Lin H., Liu Q., Zhang W., Li Z., Nallamilli B.R., Zhang J.	Quantitative phosphoproteomic analysis of early seed development in rice (Oryza sativa L.).	Plant Mol. Biol.			2015		
42514	26617267	Ikeda T., Tanaka W., Mikami M., Endo M., Hirano H.Y.	Generation of artificial drooping leaf mutants by CRISPR-Cas9 technology in rice.	Genes Genet. Syst.			2015		
42515	26531864	De Paolo S., Gaudio L., Aceto S.	Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica.	Sci Rep	5	16265	2015		
42516	26612070	Buanafina M.M., Fescemyer H.W., Sharma M., Shearer E.A.	Functional testing of a PF02458 homologue of putative rice arabinoxylan feruloyl transferase genes in Brachypodium distachyon.	Planta			2015		
42517	26337117	Rosell? M., Poschenrieder C., Guns? B., Barcel? J., Llugany M.	Differential activation of genes related to aluminium tolerance in two contrasting rice cultivars.	J. Inorg. Biochem.	152	160-6	2015		
42518	26600549	Zhang Y.D., Zheng J., Liang Z.K., Liang Y.L., Peng Z.H., Wang C.L.	Verification and evaluation of grain QTLs using RILs from TD70 x Kasalath in rice.	Genet. Mol. Res.	14(4)	14882-92	2015		
42519	26640473	Sailaja B., Subrahmanyam D., Neelamraju S., Vishnukiran T., Rao Y.V., Vijayalakshmi P., Voleti S.R., Bhadana V.P., Mangrauthia S.K.	Integrated Physiological, Biochemical, and Molecular Analysis Identifies Important Traits and Mechanisms Associated with Differential Response of Rice Genotypes to Elevated Temperature.	Front Plant Sci	6	1044	2015		
42520	26522477	Qi Z., Liu M., Dong Y., Zhu Q., Li L., Li B., Yang J., Li Y., Ru Y., Zhang H., Zheng X., Wang P., Zhang Z.	The syntaxin protein (MoSyn8) mediates intracellular trafficking to regulate conidiogenesis and pathogenicity of rice blast fungus.	New Phytol.			2015		
42521	26610268	Petitot A.S., Dereeper A., Agbessi M., Da Silva C., Guy J., Ardisson M., Fernandez D.	Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants.	Mol. Plant Pathol.			2015		
42522	26560141	Boonyaves K., Gruissem W., Bhullar N.K.	NOD promoter-controlled AtIRT1 expression functions synergistically with NAS and FERRITIN genes to increase iron in rice grains.	Plant Mol. Biol.			2015		
42523	26466747	Jeong K., Mattes N., Catausan S., Chin J.H., Paszkowski U., Heuer S.	Genetic diversity for mycorrhizal symbiosis and phosphate transporters in rice.	J Integr Plant Biol	57(11)	969-79	2015		
42524	26530637	Guo C., Sun X., Chen X., Yang S., Li J., Wang L., Zhang X.	Cloning of novel rice blast resistance genes from two rapidly evolving NBS-LRR gene families in rice.	Plant Mol. Biol.	90(1-2)	95-105	2016		
42525	26674380	Zhao Y.T., Wang M., Wang Z.M., Fang R.X., Wang X.J., Jia Y.T.	Dynamic and Coordinated Expression Changes of Rice Small RNAs in Response to Xanthomonas oryzae pv. oryzae.	J Genet Genomics	42(11)	625-37	2015		
42526	26614751	Regmi K.C., Zhang S., Gaxiola R.A.	Apoplasmic loading in the rice phloem supported by the presence of sucrose synthase and plasma membrane-localized proton pyrophosphatase.	Ann. Bot.			2015		
42527	26590017	Byun M.Y., Cui L.H., Kim W.T.	Suppression of OsKu80 results in defects in developmental growth and increased telomere length in rice (Oryza sativa L.).	Biochem. Biophys. Res. Commun.	468(4)	857-62	2015		
42528	26556651	Hooper C.M., Castleden I.R., Aryamanesh N., Jacoby R.P., Millar A.H.	Finding the Subcellular Location of Barley, Wheat, Rice and Maize Proteins: The Compendium of Crop Proteins with Annotated Locations (cropPAL).	Plant Cell Physiol.			2015		
42529	26615150	Fang Y., Lu H., Chen S., Zhu K., Song H., Qian H.	Leaf proteome analysis provides insights into the molecular mechanisms of bentazon detoxification in rice.	Pestic Biochem Physiol	125	45-52	2015		
42530	26581951	Fu X.Y., Zhu B., Han H.J., Zhao W., Tian Y.S., Peng R.H., Yao Q.H.	Enhancement of naphthalene tolerance in transgenic Arabidopsis plants overexpressing the Ferredoxin-like protein (ADI1) from rice.	Plant Cell Rep.			2015	_	Fd1, OsFd1, ADI1
42531	26640468	Lu Y., Liu Y., Niu X., Yang Q., Hu X., Zhang H.Y., Xia J.	Systems Genetic Validation of the SNP-Metabolite Association in Rice Via Metabolite-Pathway-Based Phenome-Wide Association Scans.	Front Plant Sci	6	1027	2015		
42532	26336841	Yu Z., Taylor J.L., He Y., Ni J.	Enlightenment on the aequorin-based platform for screening Arabidopsis stress sensory channels related to calcium signaling.	Plant Signal Behav	10(11)	e1057366	2015		
42533	26643956	Taniguchi M., Ochiai A., Matsushima K., Tajima K., Kato T., Saitoh E., Tanaka T.	Endotoxin-neutralizing activity and mechanism of action of a cationic alpha-helical antimicrobial octadecapeptide derived from alpha-amylase of rice.	Peptides	75	101-108	2015		
42534	26547398	Ali I., Liu B., Farooq M.A., Islam F., Azizullah A., Yu C., Su W., Gan Y.	Toxicological effects of bisphenol A on growth and antioxidant defense system in Oryza sativa as revealed by ultrastructure analysis.	Ecotoxicol. Environ. Saf.	124	277-84	2016		
42535	26582432	Mahdavi V., Ghanati F., Ghassempour A.	Integrated pathway-based and network-based analysis of GC-MS rice metabolomics data under diazinon stress to infer affected biological pathways.	Anal. Biochem.	494	31-6	2016		
42536	26466878	Wang Y., Gao B.L., Li X.X., Zhang Z.B., Yan R.M., Yang H.L., Zhu D.	Phylogenetic diversity of culturable endophytic fungi in Dongxiang wild rice (Oryza rufipogon Griff), detection of polyketide synthase gene and their antagonistic activity analysis.	Fungal Biol	119(11)	1032-45	2015		
42537	26581349	Zou S., Huang K., Xu W., Luo Y., He X.	Safety assessment of lepidopteran insect-protected transgenic rice with cry2A* gene.	Transgenic Res.			2015		
42538	26576634	Yang J., Chen X., Zhu C., Peng X., He X., Fu J., Ouyang L., Bian J., Hu L., Sun X., Xu J., He H.	RNA-seq reveals differentially expressed genes of rice (Oryza sativa) spikelet in response to temperature interacting with nitrogen at meiosis stage.	BMC Genomics	16(1)	959	2015		
42539	26609814	Plessis A., Hafemeister C., Wilkins O., Gonzaga Z.J., Meyer R.S., Pires I., M?ller C., Septiningsih E.M., Bonneau R., Purugganan M.	Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions.	Elife	4		2015		
42540	26640476	Tao J.J., Chen H.W., Ma B., Zhang W.K., Chen S.Y., Zhang J.S.	The Role of Ethylene in Plants Under Salinity Stress.	Front Plant Sci	6	1059	2015		
42541	26578239	Bund? M., Coca M.	Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice.	Plant Biotechnol. J.			2015		
42542	26587748	Gao H., Luo Z., Ge P., He J., Zhou F., Zheng P., Jiang J.	Direct Catalytic Asymmetric Synthesis of beta-Hydroxy Acids from Malonic Acid.	Org. Lett.	17(24)	5962-5	2015		
42543	26635754	Shakeel M., Rais A., Hassan M.N., Hafeez F.Y.	Root Associated Bacillus sp. Improves Growth, Yield and Zinc Translocation for Basmati Rice (Oryza sativa) Varieties.	Front Microbiol	6	1286	2015		
42544	26618163	Kim M., Kim H., Lee W., Lee Y., Kwon S.W., Lee J.	Quantitative Shotgun Proteomics Analysis of Rice Anther Proteins after Exposure to High Temperature.	International Journal of Genomics	2015	238704	2015		
42545	26624932	Liu Y., Li J., Luo Z., Wang H., Liu F.	The fate of fusion Cry1Ab/1Ac proteins from Bt-transgenic rice in soil and water.	Ecotoxicol. Environ. Saf.	124	455-9	2016		
42546	26546318	Aoki Y., Okamura Y., Tadaka S., Kinoshita K., Obayashi T.	ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression.	Plant Cell Physiol.			2015		
42547	26537003	Huang W.K., Ji H.L., Gheysen G., Debode J., Kyndt T.	Biochar-amended potting medium reduces the susceptibility of rice to root-knot nematode infections.	BMC Plant Biol.	15	267	2015		
42548	26578693	Kawahara Y., Oono Y., Wakimoto H., Ogata J., Kanamori H., Sasaki H., Mori S., Matsumoto T., Itoh T.	TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice.	Plant Cell Physiol.			2015		
42549	26573512	Han Y., Zhang K., Yang J., Zhang N., Fang A., Zhang Y., Liu Y., Chen Z., Hsiang T., Sun W.	Differential expression profiling of the early response to Ustilaginoidea virens between false smut resistant and susceptible rice varieties.	BMC Genomics	16(1)	955	2015		
42550	26587012	Lee J., Lee W., Kwon S.W.	A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions.	Proteome Sci	13	27	2015		
42551	26525061	Jameson P.E., Song J.	Cytokinin: a key driver of seed yield.	J. Exp. Bot.			2015		
42552	26603141	Hayashi K., Fujita Y., Ashizawa T., Suzuki F., Nagamura Y., Hayano-Saito Y.	Serotonin attenuates biotic stress and leads to lesion browning caused by a hypersensitive response to Magnaporthe oryzae penetration in rice.	Plant J.			2015		
42553	26452831	Hao Y.H., Zhang Z., Wang L., Liu C., Lei A.W., Yuan B.F., Feng Y.Q.	Stable isotope labeling assisted liquid chromatography-electrospray tandem mass spectrometry for quantitative analysis of endogenous gibberellins.	Talanta	144	341-8	2015		
42554	26617618	Singh A.P., Pandey B.K., Deveshwar P., Narnoliya L., Parida S.K., Giri J.	JAZ Repressors: Potential Involvement in Nutrients Deficiency Response in Rice and Chickpea.	Front Plant Sci	6	975	2015		
42555	26546731	Li M., Wang K., Li S., Yang P.	Exploration of rice pistil responses during early post-pollination through a combined proteomic and transcriptomic analysis.	J Proteomics	131	214-26	2016		
42556	26360816	Ye J., Zhang Z., Long H., Zhang Z., Hong Y., Zhang X., You C., Liang W., Ma H., Lu P.	Proteomic and phosphoproteomic analyses reveal extensive phosphorylation of regulatory proteins in developing rice anthers.	Plant J.	84(3)	527-44	2015		
42557	26445326	Satheesh V., Chidambaranathan P., Jagannadham P.T., Kumar V., Jain P.K., Chinnusamy V., Bhat S.R., Srinivasan R.	Transmembrane START domain Proteins: In silico Identification, Characterization and Expression Analysis under Stress Conditions in Chickpea (Cicer arietinum L.).	Plant Signal Behav		0	2015		
42558	26472068	Mochizuki S., Minami E., Nishizawa Y.	Live-cell imaging of rice cytological changes reveals the?importance of host vacuole maintenance for biotrophic?invasion by blast fungus, Magnaporthe oryzae.	Microbiologyopen			2015		
42559	26453434	Hu L., Ye M., Li R., Zhang T., Zhou G., Wang Q., Lu J., Lou Y.	The Rice Transcription Factor WRKY53 Suppresses Herbivore-Induced Defenses by Acting as a Negative Feedback Modulator of Mitogen-Activated Protein Kinase Activity.	Plant Physiol.	169(4)	2907-21	2015		
42560	26541262	Yu S., Bian Y., Zhou R., Mou R., Chen M., Cao Z.	Robust method for the analysis of phytochelatins in rice by high-performance liquid chromatography coupled with electrospray tandem mass spectrometry based on polymeric column materials.	J Sep Sci			2015		
42561	26484897	Byeon Y., Lee H.J., Lee H.Y., Back K.	Cloning and functional characterization of the Arabidopsis N-acetylserotonin O-methyltransferase responsible for melatonin synthesis.	J. Pineal Res.			2015		
42562	26465130	Zhao Q.C., Liu M.H., Zhang X.W., Lin C.Y., Zhang Q., Shen Z.C.	Generation of insect-resistant and glyphosate-tolerant rice by introduction of a T-DNA containing two Bt insecticidal genes and an EPSPS gene.	J Zhejiang Univ Sci B	16(10)	824-31	2015		
42563	26461930	Jin Z., Wong A., Foo J.L., Ng J., Cao Y.X., Chang M.W., Yuan Y.J.	Engineering Saccharomyces cerevisiae to produce odd chain-length fatty alcohols.	Biotechnol. Bioeng.			2015		
42564	26448265	Goto S., Sasakura-Shimoda F., Yamazaki M., Hayashi N., Suetsugu M., Ochiai H., Takatsuji H.	Development of disease-resistant rice by pathogen-responsive expression of WRKY45.	Plant Biotechnol. J.			2015		
42565	26503135	van Zeijl A., Liu W., Xiao T.T., Kohlen W., Yang W.C., Bisseling T., Geurts R.	The strigolactone biosynthesis gene DWARF27 is co-opted in rhizobium symbiosis.	BMC Plant Biol.	15	260	2015		
42566	26519289	Lee C.M., Park J., Kim B., Seo J., Lee G., Jang S., Koh H.J.	Influence of Multi-Gene Allele Combinations on grain size.of Rice and Development of a Regression Equation Model to Predict Grain Parameters.	Rice (N Y)	8(1)	33	2015		
42567	26398795	Huang Z., Lin J., Cheng Z., Xu M., Huang X., Yang Z., Zheng J.	Production of dammarane-type sapogenins in rice by expressing the dammarenediol-II synthase gene from Panax ginseng C.A. Mey.	Plant Sci.	239	106-14	2015		
42568	26697384	Saha C., Seal A.	Early changes in shoot transcriptome of rice in response to Rhodotorula mucilaginosa JGTA-S1.	Genom Data	6	237-40	2015		
42569	26459328	Pettk?-Szandtner A., Cserh?ti M., Barr?co RM., Hariharan S., Dudits D., Beemster G.T.	Core cell cycle regulatory genes in rice and their expression profiles across the growth zone of the leaf.	J. Plant Res.	128(6)	953-74	2015		
42570	26473328	Upadhyay A.K., Singh N.K., Singh R., Rai U.N.	Amelioration of arsenic toxicity in rice: Comparative effect of inoculation of Chlorella vulgaris and Nannochloropsis sp. on growth, biochemical changes and arsenic uptake.	Ecotoxicol. Environ. Saf.	124	68-73	2016		
42571	26519466		Information Commons for Rice (IC4R).	Nucleic Acids Res.			2015		
42572	26493518	Jang S.	Functional Characterization of PhapLEAFY, a FLORICAULA/LEAFY Ortholog in Phalaenopsis aphrodite.	Plant Cell Physiol.	56(11)	2234-47	2015		
42573	26523085	Hedden P., Sponsel V.	A Century of Gibberellin Research.	J. Plant Growth Regul.	34(4)	740-60	2015		
42574	26512055	Zhang Y., Lan H., Shao Q., Wang R., Chen H., Tang H., Zhang H., Huang J.	An A20/AN1-type zinc finger protein modulates gibberellins and abscisic acid contents and increases sensitivity to abiotic stress in rice (Oryza sativa).	J. Exp. Bot.	67(1)	315-26	2016		
42575	26471894	Dong X., Zhang D., Liu J., Liu Q.Q., Liu H., Tian L., Jiang L., Qu le Q.	Plastidial Disproportionating Enzyme Participates in Starch Synthesis in Rice Endosperm by Transferring Maltooligosyl Groups from Amylose and Amylopectin to Amylopectin.	Plant Physiol.	169(4)	2496-512	2015		
42576	26332571	Sasaki A., Yamaji N., Mitani-Ueno N., Kashino M., Ma J.F.	A node-localized transporter OsZIP3 is responsible for the preferential distribution of Zn to developing tissues in rice.	Plant J.	84(2)	374-84	2015		
42577	26443104	Chatterjee A., Kundu S.	Revisiting the chlorophyll biosynthesis pathway using genome scale metabolic model of Oryza sativa japonica.	Sci Rep	5	14975	2015		
42578	25982420	Lagunes-Castro Mde L., Trigos ?., L?pez-Monteon A., Mendoza G., Ramos-Ligonio A.	Cytotoxic activity and induction of inflammatory mediators of the methanol:chloroform extract of Fusarium moniliforme.	Rev Iberoam Micol	32(4)	235-41			
42579	26486996	Ren D., Rao Y., Wu L., Xu Q., Li Z., Yu H., Zhang Y., Leng Y., Hu J., Zhu L., Gao Z., Dong G., Zhang G., Guo L., Zeng D., Qian Q.	The pleiotropic ABNORMAL FLOWER AND DWARF1 affects plant height, floral development and grain yield in rice.	J Integr Plant Biol			2015	SPW1,RAP1A,LHS1,DP1,RAP1B,MADS4,MADS2,BLS1	SPW1, spw1, MADS16, OsMADS16,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,dp1, pa, DP1/PAL1, PAL1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS4, PI1,OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
42580	26511914	Smith R.A., Gonzales-Vigil E., Karlen S.D., Park J.Y., Lu F., Wilkerson C.G., Samuels L., Ralph J., Mansfield S.D.	Engineering Monolignol p-Coumarate Conjugates into Poplar and Arabidopsis Lignins.	Plant Physiol.	169(4)	2992-3001	2015		
42581	26520834	Huang Y.C., Hsiang E.C., Yang C.C., Wang A.Y.	New insight into the catalytic properties of rice sucrose synthase.	Plant Mol. Biol.	90(1-2)	127-35	2016		
42582	26518431	Liu X., Feng Z.M., Zhou C.L., Ren Y.K., Mou C.L., Wu T., Yang C.Y., Liu S.J., Jiang L., Wan J.M.	Brassinosteroid (BR) biosynthetic gene LHDD10 controls late heading and plant height in rice (Oryza sativa L.).	Plant Cell Rep.			2015		
42583	26490377	Das A., Das P., Kalita M.C., Mondal T.K.	Computational Identification, Target Prediction, and Validation of Conserved miRNAs in Insulin plant (Costus pictus D. Don).	Appl. Biochem. Biotechnol.			2015		
42584	26479191	Woo J.W., Kim J., Kwon S.I., Corval?n C., Cho S.W., Kim H., Kim S.G., Kim S.T., Choe S., Kim J.S.	DNA-free genome editing in plants with preassembled CRISPR-Cas9 ribonucleoproteins.	Nat. Biotechnol.	33(11)	1162-4	2015		
42585	26477688	Alpuerto J.B., Hussain R.M., Fukao T.	The key regulator of submergence tolerance, SUB1A, promotes photosynthetic and metabolic recovery from submergence damage in rice leaves.	Plant Cell Environ.			2015		
42586	26512058	Wang W.S., Zhao X.Q., Li M., Huang L.Y., Xu J.L., Zhang F., Cui Y.R., Fu B.Y., Li Z.K.	Complex molecular mechanisms underlying seedling salt tolerance in rice revealed by comparative transcriptome and metabolomic profiling.	J. Exp. Bot.	67(1)	405-19	2016		
42587	26333774	Rizal G., Thakur V., Dionora J., Karki S., Wanchana S., Acebron K., Larazo N., Garcia R., Mabilangan A., Montecillo F., Danila F., Mogul R., Pablico P., Leung H., Langdale J.A., Sheehy J., Kelly S., Quick W.P.	Two forward genetic screens for vein density mutants in sorghum converge on a cytochrome P450 gene in the brassinosteroid pathway.	Plant J.	84(2)	257-66	2015		
42588	26511913	Wu J., Shahid M.Q., Chen L., Chen Z., Wang L., Liu X., Lu Y.	Polyploidy Enhances F1 pollen sterility Loci Interactions That Increase Meiosis Abnormalities and pollen sterility in Autotetraploid Rice.	Plant Physiol.	169(4)	2700-17	2015	SB	Sb*, Hst17, S24, F5-Du
42589	26451896	Hayashi G., Moro C.F., Rohila J.S., Shibato J., Kubo A., Imanaka T., Kimura S., Ozawa S., Fukutani S., Endo S., Ichikawa K., Agrawal G.K., Shioda S., Hori M., Fukumoto M., Rakwal R.	2D-DIGE-based proteome expression changes in leaves of rice seedlings exposed to low-level gamma radiation at Iitate village, Fukushima.	Plant Signal Behav		0	2015		
42590	26498172	Vasudevan K., Gruissem W., Bhullar N.K.	Identification of novel alleles of the rice blast resistance gene Pi54.	Sci Rep	5	15678	2015		
42591	26473722	Huang L.F., Tan C.C., Yeh J.F., Liu H.Y., Liu Y.K., Ho S.L., Lu C.A.	Efficient Secretion of Recombinant Proteins from Rice Suspension-Cultured Cells Modulated by the Choice of Signal Peptide.	PLoS ONE	10(10)	e0140812	2015		
42592	26543735	Zuniga-Soto E., Mullins E., Dedicova B.	Ensifer-mediated transformation: an efficient non-Agrobacterium protocol for the genetic modification of rice.	Springerplus	4	600	2015		
42593	26476396	P G K., Kuruvilla S., Mathew M.K.	Functional characterization of a transition metal ion transporter, OsZIP6 from rice (Oryza sativa L.).	Plant Physiol. Biochem.	97	165-74	2015		
42594	26488581	Gong H.Y., Li Y., Fang G., Hu D.H., Jin W.B., Wang Z.H., Li Y.S.	Transgenic Rice Expressing ICTB and FBP/SBPase Derived from Cyanobacteria Exhibits Enhanced Photosynthesis and Mesophyll Conductance to CO2.	PLoS ONE	10(10)	e0140928	2015		
42595	26497693	Rajpoot R., Rani A., Srivastava R.K., Pandey P., Dubey R.S.	Terminalia arjuna bark extract alleviates nickel toxicity by suppressing its uptake and modulating antioxidative defence in rice seedlings.	Protoplasma			2015		
42596	26492850	Tian Y.S., Xu J., Zhao W., Xing X.J., Fu X.Y., Peng R.H., Yao Q.H.	Identification of a phosphinothricin-resistant mutant of rice glutamine synthetase using DNA shuffling.	Sci Rep	5	15495	2015		
42597	26441054	Xiang C., Liang X., Chu R., Duan M., Cheng J., Ding Z., Wang J.	Fine mapping of a palea defective 1 (pd1), a locus associated with palea and stamen development in rice.	Plant Cell Rep.	34(12)	2151-9	2015		
42598	26470846	Zhao L.H., Zhou X.E., Yi W., Wu Z., Liu Y., Kang Y., Hou L., de Waal PW., Li S., Jiang Y., Scaffidi A., Flematti G.R., Smith S.M., Lam V.Q., Griffin P.R., Wang Y., Li J., Melcher K., Xu H.E.	Destabilization of strigolactone receptor DWARF14 by binding of ligand and E3-ligase signaling effector DWARF3.	Cell Res.	25(11)	1219-36	2015		
42599	26504138	Wang L., Lu Q., Wen X., Lu C.	Enhanced Sucrose Loading Improves Rice Yield by Increasing Grain Size.	Plant Physiol.	169(4)	2848-62	2015		
42600	26517906	Lef?vre F., Baijot A., Boutry M.	Plant ABC transporters: time for biochemistry?	Biochem. Soc. Trans.	43(5)	931-6	2015		
42601	26496194	Cui L.G., Shan J.X., Shi M., Gao J.P., Lin H.X.	DCA1 Acts as a Transcriptional Co-activator of DST and Contributes to Drought and salt tolerance in Rice.	PLoS Genet.	11(10)	e1005617	2015	_,DCA1,DST	prx24,OsDCA1,OsDST
42602	26467431	Zhang S.D., Ling L.Z., Yi T.S.	Evolution and divergence of SBP-box genes in land plants.	BMC Genomics	16	787	2015		
42603	26452472	Nandy S., Zhao S., Pathak B.P., Manoharan M., Srivastava V.	Gene stacking in plant cell using recombinases for gene integration and nucleases for marker gene deletion.	BMC Biotechnol.	15	93	2015		
42604	26455463	Kubo T., Takashi T., Ashikari M., Yoshimura A., Kurata N.	Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 hybrid sterility in Rice.	Mol Plant	9	221-232	2016	HSA1B,HSA2,HSA1A,HSA3	hsa1(t), s(t), hst49,hsa2(t)*, hsa2(t), hst50,hsa1(t), s(t), hst49,hsa3(t)
42605	26640678	Nie Y.Y., Zhang L., Wu Y.H., Liu H.J., Mao W.W., Du J., Xiu H.L., Wu X.Y., Li X., Yan Y.W., Liu G.L., Liu H.Y., Hu S.P.	Screening of candidate genes and fine mapping of drought tolerance quantitative trait loci on chromosome 4 in rice (Oryza sativa L.) under drought stress.	Ecol Evol	5(21)	5007-15	2015		
42606	26471973	Krattinger S.G., Sucher J., Selter L.L., Chauhan H., Zhou B., Tang M., Upadhyaya N.M., Mieulet D., Guiderdoni E., Weidenbach D., Schaffrath U., Lagudah E.S., Keller B.	The wheat durable, multipathogen resistance gene Lr34 confers partial blast resistance in rice.	Plant Biotechnol. J.			2015		
42607	26498441	Zhao X., Daygon V.D., McNally K.L., Hamilton R.S., Xie F., Reinke R.F., Fitzgerald M.A.	Identification of stable QTLs causing chalk in rice grains in nine environments.	Theor. Appl. Genet.			2015		
42608	26432387	Ermawar R.A., Collins H.M., Byrt C.S., Henderson M., O'Donovan LA., Shirley N.J., Schwerdt J.G., Lahnstein J., Fincher G.B., Burton R.A.	Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp.	BMC Plant Biol.	15	236	2015		
42609	26479064	Chen Y., Wang X.M., Zhou L., He Y., Wang D., Qi Y.H., Jiang D.A.	Rubisco Activase Is Also a Multiple Responder to Abiotic Stresses in Rice.	PLoS ONE	10(10)	e0140934	2015		
42610	26432636	Nozoye T., Nagasaka S., Kobayashi T., Sato Y., Uozumi N., Nakanishi H., Nishizawa N.K.	The Phytosiderophore Efflux Transporter TOM2 Is Involved in Metal Transport in Rice.	J. Biol. Chem.	290(46)	27688-99	2015		
42611	26398793	Zhang J., Zou W., Li Y., Feng Y., Zhang H., Wu Z., Tu Y., Wang Y., Cai X., Peng L.	Silica distinctively affects cell wall features and lignocellulosic saccharification with large enhancement on biomass production in rice.	Plant Sci.	239	84-91	2015		
42612	26516867	Yoshida A., Ohta M., Kuwahara K., Cao M.J., Hara K., Osatomi K.	Purification and Characterization of Cathepsin B from the Muscle of Horse Mackerel Trachurus japonicus.	Mar Drugs	13(11)	6550-65	2015		
42613	26454879	Yu C., Wang L., Xu S., Zeng Y., He C., Chen C., Huang W., Zhu Y., Hu J.	Mitochondrial ORFH79 is Essential for Drought and Salt Tolerance in Rice.	Plant Cell Physiol.	56(11)	2248-58	2015		
42614	26474307	Ahmad I., Devonshire J., Mohamed R., Schultze M., Maathuis F.J.	Overexpression of the potassium channel TPKb in small vacuoles confers osmotic and drought tolerance to rice.	New Phytol.			2015		
42615	26456797	De Bruyne L., Van Poucke C., Di Mavungu JD., Zainudin N.A., Vanhaecke L., De Vleesschauwer D., Turgeon B.G., De Saeger S., H?fte M.	Comparative chemical screening and genetic analysis reveal tentoxin as a new virulence factor in Cochliobolus miyabeanus, the causal agent of brown spot disease on rice.	Mol. Plant Pathol.			2015		
42616	26463180	Lopez L., Barreiro R., Fischer M., Koch M.A.	Mining microsatellite markers from public expressed sequence tags databases for the study of threatened plants.	BMC Genomics	16	781	2015		
42617	26481460	Kang C., Liu Z.	Global identification and analysis of long non-coding RNAs in diploid strawberry Fragaria vesca during flower and fruit development.	BMC Genomics	16(1)	815	2015		
42618	26481230	Hinge V., Patil H., Nadaf A.	Comparative Characterization of Aroma Volatiles and Related Gene Expression Analysis at Vegetative and Mature Stages in Basmati and Non-Basmati Rice (Oryza sativa L.) Cultivars.	Appl. Biochem. Biotechnol.			2015		
42619	26583021	Liu M., Chu M., Ding Y., Wang S., Liu Z., Tang S., Ding C., Li G.	Exogenous spermidine alleviates oxidative damage and reduce yield loss in rice submerged at tillering stage.	Front Plant Sci	6	919	2015		
42620	26505442	Liu X., Du Y.R., Li X.H., Li X.L., Yang W.Q., Wang Y.	Breeding of a target genotype variety based on identified chalkiness marker-QTL associations in rice (Oryza sativa L.).	Genet. Mol. Res.	14(4)	12894-902	2015		
42621	26458744	Vikram P., Swamy B.P., Dixit S., Singh R., Singh B.P., Miro B., Kohli A., Henry A., Singh N.K., Kumar A.	Drought susceptibility of modern rice varieties: an effect of linkage of drought tolerance with undesirable traits.	Sci Rep	5	14799	2015		
42622	26506081	Yamamura C., Mizutani E., Okada K., Nakagawa H., Fukushima S., Tanaka A., Maeda S., Kamakura T., Yamane H., Takatsuji H., Mori M.	Diterpenoid Phytoalexin Factor, a bHLH Transcription Factor, Plays a Central Role in the Biosynthesis of Diterpenoid Phytoalexins in Rice.	Plant J.			2015		
42623	26476017	Arenhart R.A., Schunemann M., Bucker Neto L., Margis R., Wang Z.Y., Margis-Pinheiro M.	Rice ASR1 and ASR5 are complementary transcription factors regulating aluminum responsive genes.	Plant Cell Environ.			2015		
42624	26451709	Shi X., Han X., Lu T.G.	Callose synthesis during reproductive development in monocotyledonous and dicotyledonous plants.	Plant Signal Behav		0	2015		
42625	26500670	Wu Q., Li D., Li D., Liu X., Zhao X., Li X., Li S., Zhu L.	Overexpression of OsDof12 affects plant architecture in rice (Oryza sativa L.).	Front Plant Sci	6	833	2015		
42626	26515106	Sun H., Tao J., Gu P., Xu G., Zhang Y.	The role of strigolactones in root development.	Plant Signal Behav		0	2015		
42627	26474992	Wang Y., Xu J., Deng D., Ding H., Bian Y., Yin Z., Wu Y., Zhou B., Zhao Y.	A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).	Planta			2015		
42628	26001286	Tousheh M., Darvishi F.Z., Miroliaei M.	A novel biological role for nsLTP2 from Oriza sativa: Potential incorporation with anticancer agents, nucleosides and their analogues.	Comput Biol Chem	58	9-18	2015		
42629	26462921	Li J., Wu Y., Li X., Wang Y., Zhang L., Li Y., Wu G.	Developing a matrix reference material for screening of transgenic rice.	Anal Bioanal Chem			2015		
42630	26457741	Nazir H., Asghar H.N., Zahir Z.A., Akhtar M.J., Saleem M.	Judicious use of kinetin to improve growth and yield of rice in nickel contaminated soil.	Int J Phytoremediation		0	2015		
42631	26460975	Deng Z., Qin L., Gao Y., Weisskopf A.R., Zhang C., Fuller D.Q.	From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700-500 BC).	PLoS ONE	10(10)	e0139885	2015		
42632	26539206	Reddy M.M., Ulaganathan K.	Draft genome sequence of Oryza sativa elite indica cultivar RP Bio-226.	Front Plant Sci	6	896	2015		
42633	26351308	Zhang X., Sun J., Cao X., Song X.	Epigenetic Mutation of RAV6 Affects leaf angle and Seed Size in Rice.	Plant Physiol.	169(3)	2118-28	2015	D11,_,_,AP2/EREBP129,AP2/EREBP96,_,D2,BRD1,AP2/EREBP127,_,_,_,_,D61,AP2/EREBP77,WRKY123,_	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,,RAVL1, RAVL ,AP2/EREBP#129, OsRAV2, RAV2,AP2/EREBP#096,,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,AP2/EREBP#127,,,,RAV6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,AP2/EREBP#077, OsRAV1, RAV1,OsWRKY123,
42634	26391157	Zhao X., Zhou L., Ponce K., Ye G.	The Usefulness of Known Genes/Qtls for Grain Quality Traits in an Indica Population of Diverse Breeding Lines Tested using Association Analysis.	Rice (N Y)	8(1)	29	2015		
42635	26324258	Hu M., Li F., Liu C., Wu W.	The diversity and abundance of As(III) oxidizers on root iron plaque is critical for arsenic bioavailability to rice.	Sci Rep	5	13611	2015		
42636	26340904	Lung S.C., Chye M.L.	Deciphering the roles of acyl-CoA-binding proteins in plant cells.	Protoplasma			2015		
42637	26566840	Mohanty B., Kitazumi A., Cheung C.Y., Lakshmanan M., de Los Reyes BG., Jang I.C., Lee D.Y.	Identification of candidate network hubs involved in metabolic adjustments of rice under drought stress by integrating transcriptome data and genome-scale metabolic network.	Plant Sci.	242	224-39	2016		
42638	26358849	Yamori W., Shikanai T., Makino A.	Photosystem I cyclic electron flow via chloroplast NADH dehydrogenase-like complex performs a physiological role for photosynthesis at low light.	Sci Rep	5	13908	2015		
42639	26329877	Kurotani K., Yamanaka K., Toda Y., Ogawa D., Tanaka M., Kozawa H., Nakamura H., Hakata M., Ichikawa H., Hattori T., Takeda S.	Stress Tolerance Profiling of a Collection of Extant Salt-Tolerant Rice Varieties and Transgenic Plants Overexpressing Abiotic Stress Tolerance Genes.	Plant Cell Physiol.	56(10)	1867-76	2015		
42640	26361777	Hwang S.G., Kim D.S., Hwang J.E., Park H.M., Jang C.S.	Identification of altered metabolic pathways of gamma-irradiated rice mutant via network-based transcriptome analysis.	Genetica	143(6)	635-44	2015		
42641	26414482	Li Z., Gao Y., Zhang M., Feng J., Xiong Y.	Effects of a diet containing genetically modified rice expressing the Cry1Ab/1Ac protein (Bacillus thuringiensis toxin) on broiler chickens.	Arch Anim Nutr	69(6)	487-98	2015		
42642	26373662	Ye H., Feng J., Zhang L., Zhang J., Mispan M.S., Cao Z., Beighley D.H., Yang J., Gu X.Y.	Map-Based Cloning of Seed Dormancy1-2 Identified a Gibberellin Synthesis Gene Regulating the Development of Endosperm-Imposed Dormancy in Rice.	Plant Physiol.	169(3)	2152-65	2015		
42643	26410574	Wang J., Ye B., Yin J., Yuan C., Zhou X., Li W., He M., Wang J., Chen W., Qin P., Ma B., Wang Y., Li S., Chen X.	Characterization and fine mapping of a light-dependent leaf lesion mimic mutant 1 in rice.	Plant Physiol. Biochem.	97	44-51	2015	RLIN1	CPO, CPOX, LLM1, HEMF
42644	26232644	Yang T., Wang L., Li C., Liu Y., Zhu S., Qi Y., Liu X., Lin Q., Luan S., Yu F.	Receptor protein kinase FERONIA controls leaf starch accumulation by interacting with glyceraldehyde-3-phosphate dehydrogenase.	Biochem. Biophys. Res. Commun.	465(1)	77-82	2015	DRUS1	OsCrRLK1L8, CrRLK1L8, FLR1
42645	26366992	Liu S., Hua L., Dong S., Chen H., Zhu X., Jiang J., Zhang F., Li Y., Fang X., Chen F.	OsMAPK6, a mitogen-activated protein kinase, influences rice grain size and biomass production.	Plant J.			2015		
42646	26369665	Cheah B.H., Nadarajah K., Divate M.D., Wickneswari R.	Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage.	BMC Genomics	16(1)	692	2015		
42647	26597356	Mathpal B., Srivastava P.C., Shankhdhar D., Shankhdhar S.C.	Improving key enzyme activities and quality of rice under various methods of zinc application.	Physiol Mol Biol Plants	21(4)	567-72	2015		
42648	26366116	Liu X., Zhang J., Zhang C., Wang L., Chen H., Zhu Z., Tu J.	Development of photoperiod- and thermo-sensitive male sterility rice expressing transgene Bacillus thuringiensis.	Breed. Sci.	65(4)	333-9	2015		
42649	26400163	Zhang T., Marand A.P., Jiang J.	PlantDHS: a database for DNase I hypersensitive sites in plants.	Nucleic Acids Res.			2015		
42650	26213119	Lu G., Coneva V., Casaretto J.A., Ying S., Mahmood K., Liu F., Nambara E., Bi Y.M., Rothstein S.J.	OsPIN5b modulates rice (Oryza sativa) plant architecture and yield by changing auxin homeostasis, transport and distribution.	Plant J.	83(5)	913-25	2015		
42651	26385373	Zhu X., Zhong S., Chao S., Gu Y.Q., Kianian S.F., Elias E., Cai X.	Toward a better understanding of the genomic region harboring Fusarium head blight resistance QTL Qfhs.ndsu-3AS in durum wheat.	Theor. Appl. Genet.			2015		
42652	26378793	Wakabayashi K., Soga K., Hoson T., Kotake T., Yamazaki T., Higashibata A., Ishioka N., Shimazu T., Fukui K., Osada I., Kasahara H., Kamada M.	Suppression of Hydroxycinnamate Network Formation in Cell Walls of Rice Shoots Grown under Microgravity Conditions in Space.	PLoS ONE	10(9)	e0137992	2015		
42653	26416765	Song X., Duan W., Huang Z., Liu G., Wu P., Liu T., Li Y., Hou X.	Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom.	Sci Rep	5	14631	2015		
42654	26372017	Kim M.J., Kim Y.H., Song G.S., Suzuki Y., Kim M.K.	Enzymatic transglycosylation of ginsenoside Rg1 by rice seed alpha-glucosidase.	Biosci. Biotechnol. Biochem.		1-11	2015		
42655	26424157	Wang C., Yue W., Ying Y., Wang S., Secco D., Liu Y., Whelan J., Tyerman S.D., Shou H.	Rice SPX-Major Facility Superfamily3, a Vacuolar Phosphate Efflux Transporter, Is Involved in Maintaining Phosphate Homeostasis in Rice.	Plant Physiol.	169(4)	2822-31	2015		
42656	26350041	Wang Y., Feng L., Zhu Y., Li Y., Yan H., Xiang Y.	Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and rice.	Biol. Direct	10	48	2015		
42657	26384983	Ranathunge K., Schreiber L., Bi Y.M., Rothstein S.J.	Ammonium-induced architectural and anatomical changes with altered suberin and lignin levels significantly change water and solute permeabilities of rice (Oryza sativa L.) roots.	Planta	243(1)	231-249	2016		
42658	26442070	Samanta S., Thakur J.K.	Importance of Mediator complex in the regulation and integration of diverse signaling pathways in plants.	Front Plant Sci	6	757	2015		
42659	26403301	Hayashi-Tsugane M., Maekawa M., Tsugane K.	A gain-of-function Bushy dwarf tiller 1 mutation in rice microRNA gene miR156d caused by insertion of the DNA transposon nDart1.	Sci Rep	5	14357	2015		
42660	25985900	Chakravarthi M., Philip A., Subramonian N.	Truncated Ubiquitin 5' Regulatory Region from Erianthus arundinaceus Drives Enhanced Transgene Expression in Heterologous Systems.	Mol. Biotechnol.	57(9)	820-35	2015		
42661	26439659	Garc?a-Cristobal J., Garc?a-Villaraco A., Ramos B., Gutierrez-Ma?ero J., Lucas J.A.	Priming of pathogenesis related-proteins and enzymes related to oxidative stress by plant growth promoting rhizobacteria on rice plants upon abiotic and biotic stress challenge.	J. Plant Physiol.	188	72-9	2015		
42662	26442025	Singh A., Kushwaha H.R., Soni P., Gupta H., Singla-Pareek SL., Pareek A.	Tissue specific and abiotic stress regulated transcription of histidine kinases in plants is also influenced by diurnal rhythm.	Front Plant Sci	6	711	2015		
42663	26361473	Jabeen N., Chaudhary Z., Gulfraz M., Rashid H., Mirza B.	Expression of Rice chitinase gene in Genetically Engineered Tomato Confers Enhanced Resistance to Fusarium Wilt and Early Blight.	Plant Pathol. J.	31(3)	252-8	2015		
42664	26415870	Oung H.M., Lin K.C., Wu T.M., Chandrika N.N., Hong C.Y.	Hygromycin B-induced cell death is partly mediated by reactive oxygen species in rice (Oryza sativa L.).	Plant Mol. Biol.	89(6)	577-88	2015		
42665	26399533	Huangwei C., Fuan N., Can C., Jihua Z., Xinqi W., Xiaojin L., Qin Y., Liming C.	Gene expression profiling of flag leaves at the booting stage in the japonica hybrid rice Huayou14 and its parental lines by microarray.	Yi Chuan	37(9)	932-8	2015		
42666	26383862	Fleck A.T., Schulze S., Hinrichs M., Specht A., Wa?mann F., Schreiber L., Schenk M.K.	Silicon Promotes Exodermal Casparian Band Formation in Si-Accumulating and Si-Excluding Species by Forming Phenol Complexes.	PLoS ONE	10(9)	e0138555	2015		
42667	26523132	Park D., Kim D., Jang G., Lim J., Shin Y.J., Kim J., Seo M.S., Park S.H., Kim J.K., Kwon T.H., Choi I.Y.	Efficiency to Discovery Transgenic Loci in GM Rice Using Next Generation Sequencing Whole Genome Re-sequencing.	Genomics Inform	13(3)	81-5	2015		
42668	26421293	Wischnitzki E., Sehr E.M., Hansel-Hohl K., Berenyi M., Burg K., Fluch S.	How to Isolate a Plant's Hypomethylome in One Shot.	Biomed Res Int	2015	570568	2015		
42669	26442055	Hu W., Zuo J., Hou X., Yan Y., Wei Y., Liu J., Li M., Xu B., Jin Z.	The auxin response factor gene family in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress.	Front Plant Sci	6	742	2015		
42670	26362270	Wu J., Feng F., Lian X., Teng X., Wei H., Yu H., Xie W., Yan M., Fan P., Li Y., Ma X., Liu H., Yu S., Wang G., Zhou F., Luo L., Mei H.	Genome-wide Association Study (GWAS) of mesocotyl elongation based on re-sequencing approach in rice.	BMC Plant Biol.	15	218	2015		
42671	26398683	Ma X., Ma J., Zhai H., Xin P., Chu J., Qiao Y., Han L.	CHR729 Is a CHD3 Protein That Controls Seedling Development in Rice.	PLoS ONE	10(9)	e0138934	2015		
42672	26338659	Furuta T., Komeda N., Asano K., Uehara K., Gamuyao R., Angeles-Shim RB., Nagai K., Doi K., Wang D.R., Yasui H., Yoshimura A., Wu J., McCouch S.R., Ashikari M.	Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci.	G3 (Bethesda)	5(11)	2267-74	2015	RAE2 ,AN1,RAE3	OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1,
42673	26392263	Zhao G., Shi J., Liang W., Xue F., Luo Q., Zhu L., Qu G., Chen M., Schreiber L., Zhang D.	Two ATP Binding Cassette G Transporters, Rice ATP Binding Cassette G26 and ATP Binding Cassette G15, Collaboratively Regulate Rice Male Reproduction.	Plant Physiol.	169(3)	2064-79	2015	ABCG15,ABCG26	OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsABCG26
42674	26363148	Xie P.P., Deng J.W., Zhang H.M., Ma Y.H., Cao D.J., Ma R.X., Liu R.J., Liu C., Liang Y.G.	Effects of cadmium on bioaccumulation and biochemical stress response in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	122	392-8	2015		
42675	26419216	Salah S.M., Yajing G., Dongdong C., Jie L., Aamir N., Qijuan H., Weimin H., Mingyu N., Jin H.	Seed priming with polyethylene glycol regulating the physiological and molecular mechanism in rice (Oryza sativa L.) under nano-ZnO stress.	Sci Rep	5	14278	2015		
42676	26440094	Zhang F., Tang J., Zhou Y., Luo X., Xie J.	Characterization and fine mapping of NGP4c(t), a novel gene controlling the number of grains per panicle in rice.	J. Genet.	94(3)	513-7	2015		
42677	26341416	Watanabe K.A., Homayouni A., Tufano T., Lopez J., Ringler P., Rushton P., Shen Q.J.	Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing.	DNA Res.	22(5)	319-29	2015		
42678	26363880	Cho J.G., Cha B.J., Min Lee S., Shrestha S., Jeong R.H., Sung Lee D., Kim Y.C., Lee D.G., Kang H.C., Kim J., Baek N.I.	Diterpenes from the roots of Oryza sativa L. and their inhibition activity on NO production in LPS-stimulated RAW264.7 macrophages.	Chem. Biodivers.	12(9)	1356-64	2015		
42679	26332833	Gordy J.W., Leonard B.R., Blouin D., Davis J.A., Stout M.J.	Comparative Effectiveness of Potential Elicitors of Plant Resistance against Spodoptera frugiperda (J. E. Smith) (Lepidoptera: Noctuidae) in Four Crop Plants.	PLoS ONE	10(9)	e0136689	2015		
42680	26353816	Glover N.M., Daron J., Pingault L., Vandepoele K., Paux E., Feuillet C., Choulet F.	Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B.	Genome Biol.	16	188	2015		
42681	26348400	Sagor G.H., Inoue M., Kim D.W., Kojima S., Niitsu M., Berberich T., Kusano T.	The polyamine oxidase from lycophyte Selaginella lepidophylla (SelPAO5), unlike that of angiosperms, back-converts thermospermine to norspermidine.	FEBS Lett.	589(20 Pt B)	3071-8	2015		
42682	26483837	Xu W., Di C., Zhou S., Liu J., Li L., Liu F., Yang X., Ling Y., Su Z.	Rice transcriptome analysis to identify possible herbicide quinclorac detoxification genes.	Front Genet	6	306	2015		
42683	26408090	Chen Z.C., Ma J.F.	Improving nitrogen use efficiency in rice through enhancing root nitrate uptake mediated by a nitrate transporter, NRT1.1B.	J Genet Genomics	42(9)	463-5	2015		
42684	26416238	Xu X., Liu W., Zhong J., Luo L., Liu C., Luo S., Chen L.	Binding interaction between rice glutelin and amylose: Hydrophobic interaction and conformational changes.	Int. J. Biol. Macromol.	81	942-50	2015		
42685	26566849	Ellur R.K., Khanna A., Yadav A., Pathania S., Rajashekara H., Singh V.K., Gopala Krishnan S., Bhowmick P.K., Nagarajan M., Vinod K.K., Prakash G., Mondal K.K., Singh N.K., Vinod Prabhu K., Singh A.K.	Improvement of Basmati rice varieties for resistance to blast and bacterial blight diseases using marker assisted backcross breeding.	Plant Sci.	242	330-41	2016		
42686	26382720	Ding L., Gao L., Liu W., Wang M., Gu M., Ren B., Xu G., Shen Q., Guo S.	Aquaporin plays an important role in mediating chloroplastic CO2 concentration under high-N supply in rice (Oryza sativa) plants.	Physiol Plant			2015		
42687	26350634	Mega R., Meguro-Maoka A., Endo A., Shimosaka E., Murayama S., Nambara E., Seo M., Kanno Y., Abrams S.R., Sato Y.	Sustained low abscisic acid levels increase seedling vigor under cold stress in rice (Oryza sativa L.).	Sci Rep	5	13819	2015		
42688	26419335	Kakei Y., Mochida K., Sakurai T., Yoshida T., Shinozaki K., Shimada Y.	Transcriptome analysis of hormone-induced gene expression in Brachypodium distachyon.	Sci Rep	5	14476	2015		
42689	26340891	Kaikavoosi K., Kad T.D., Zanan R.L., Nadaf A.B.	2-Acetyl-1-Pyrroline Augmentation in Scented indica Rice (Oryza sativa L.) Varieties Through Delta(1)-Pyrroline-5-carboxylate synthetase (P5CS) Gene Transformation.	Appl. Biochem. Biotechnol.	177(7)	1466-79	2015		
42690	26351309	Yang X., Zhao X.G., Li C.Q., Liu J., Qiu Z.J., Dong Y., Wang Y.Z.	Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae.	Plant Physiol.	169(3)	2138-51	2015		
42691	26334612	Peng Y., Hu Y., Mao B., Xiang H., Shao Y., Pan Y., Sheng X., Li Y., Ni X., Xia Y., Zhang G., Yuan L., Quan Z., Zhao B.	Genetic analysis for rice grain quality traits in the YVB stable variant line using RAD-seq.	Mol. Genet. Genomics			2015		
42692	26366118	Shim J., Torollo G., Angeles-Shim RB., Cabunagan R.C., Choi I.R., Yeo U.S., Ha W.G.	Rice tungro spherical virus resistance into photoperiod-insensitive japonica rice by marker-assisted selection.	Breed. Sci.	65(4)	345-51	2015		
42693	26386366	Alamgir K.M., Hojo Y., Christeller J.T., Fukumoto K., Isshiki R., Shinya T., Baldwin I.T., Galis I.	Systematic analysis of rice (Oryza sativa) metabolic responses to herbivory.	Plant Cell Environ.			2015		
42694	26345976	Li W.C., Zhang L., Wang J., Wang D., Wang T.X., Duan C.X.	Effects of silicon on seed setting rate of rice intersubspecific hybrids.	Genet. Mol. Res.	14(3)	10359-64	2015		
42695	26566831	Kurokawa Y., Noda T., Yamagata Y., Angeles-Shim R., Sunohara H., Uehara K., Furuta T., Nagai K., Jena K.K., Yasui H., Yoshimura A., Ashikari M., Doi K.	Construction of a versatile SNP array for pyramiding useful genes of rice.	Plant Sci.	242	131-9	2016		
42696	26403240	Navarro-Reig M., Jaumot J., Garc?a-Reiriz A., Tauler R.	Evaluation of changes induced in rice metabolome by Cd and Cu exposure using LC-MS with XCMS and MCR-ALS data analysis strategies.	Anal Bioanal Chem	407(29)	8835-47	2015		
42697	26335702	Hong H., Liu Y., Zhang H., Xiao J., Li X., Wang S.	Small RNAs and Gene Network in a Durable disease resistance Gene--Mediated Defense Responses in Rice.	PLoS ONE	10(9)	e0137360	2015		
42698	26483798	Das G., Rao G.J.	Molecular marker assisted gene stacking for biotic and abiotic stress resistance genes in an elite rice cultivar.	Front Plant Sci	6	698	2015		
42699	26407850	Kan C.C., Chung T.Y., Juo Y.A., Hsieh M.H.	Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.	BMC Genomics	16(1)	731	2015		
42700	26366117	Horibata A., Kakikubo Y., Kato T.	Distorted genetic segregation of the transposon mPing at the long arm of chromosome 12 in rice.	Breed. Sci.	65(4)	340-4	2015		
42701	26369652	Li Y., Hallerman E.M., Liu Q., Wu K., Peng Y.	The development and status of Bt rice in China.	Plant Biotechnol. J.			2015		
42702	26484259	Kumar M., Kim S.R., Sharma P.C., Pareek A.	Simple and efficient way to detect small polymorphic bands in plants.	Genom Data	5	218-22	2015		
42703	26566836	Wei F.J., Tsai Y.C., Wu H.P., Huang L.T., Chen Y.C., Chen Y.F., Wu C.C., Tseng Y.T., Hsing Y.I.	Both Hd1 and Ehd1 are important for artificial selection of flowering time in cultivated rice.	Plant Sci.	242	187-94	2016		
42704	26566846	Bimpong I.K., Manneh B., Sock M., Diaw F., Amoah N.K., Ismail A.M., Gregorio G., Singh R.K., Wopereis M.	Improving salt tolerance of lowland rice cultivar 'Rassi' through marker-aided backcross breeding in West Africa.	Plant Sci.	242	288-99	2016		
42705	26356220	Talukdar P., Douglas A., Price A.H., Norton G.J.	Biallelic and Genome Wide Association Mapping of Germanium Tolerant Loci in Rice (Oryza sativa L.).	PLoS ONE	10(9)	e0137577	2015		
42706	26378525	Nam M.H., Bang E., Kwon T.Y., Kim Y., Kim E.H., Cho K., Park W.J., Kim B.G., Yoon I.S.	Metabolite Profiling of Diverse Rice Germplasm and Identification of Conserved Metabolic Markers of Rice Roots in Response to Long-Term Mild Salinity Stress.	Int J Mol Sci	16(9)	21959-74	2015		
42707	26395408	Qian D., Tian L., Qu L.	Proteomic analysis of endoplasmic reticulum stress responses in rice seeds.	Sci Rep	5	14255	2015		
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42709	20807878	Khurana P., Jessica L Henty, Huang S., Andrew M Staiger, Blanchoin L., Christopher J Staiger	Arabidopsis VILLIN1 and VILLIN3 have overlapping and distinct activities in actin bundle formation and turnover.	Plant Cell	22(8)	2727-48	2010	_,_,_,_,_	VLN5, OsVLN5, Os VLN5,VLN4, OsVLN4, Os VLN4,VLN3, OsVLN3, Os VLN3,VLN2, OsVLN2, Os VLN2,VLN1, OsVLN1, Os VLN1
42710	22431979	Rai A., Suprasanna P., Stanislaus F D'Souza, Kumar V.	Membrane topology and predicted RNA-binding function of the 'early responsive to dehydration (ERD4)' plant protein.	PLoS ONE	7(3)	e32658	2012	ERD4	OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2
42711	15002667	Yuan H., Chen X., Zhu L., He G.	Isolation and characterization of a novel rice gene encoding a putative insect-inducible protein homologous to wheat Wir1.	J. Plant Physiol.	161(1)	79-85	2004	_	bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22
42712	23826294	Xu J., Audenaert K., Hofte M., De Vleesschauwer D.	Abscisic Acid Promotes Susceptibility to the Rice Leaf Blight Pathogen Xanthomonas oryzae pv oryzae by Suppressing Salicylic Acid-Mediated Defenses.	PLoS ONE	8(6)	e67413	2013	NH1,WRKY13,LEA22,NCED1,NCED3,WRKY45,DHN1	OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsWRKY13,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsWRKY45,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23
42713	16942608	Luk?s Synek, Schlager N., Marek Eli?s, Micha?l Quentin, Marie-Theres Hauser, Viktor Z?rsk?	AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development.	Plant J.	48(1)	54-72	2006	EXO70F5,EXO70FX4,EXO70H3B,EXO70I1,EXO70FX15,EXO70G2,EXO70FX16,EXO70H3A,EXO70FX10,EXO70H1,EXO70FX12,EXO70FX11,EXO70C2,EXO70F3,EXO70D1,EXO70G1,EXO70F1,EXO70X6,EXO70X5,EXO70FX7,EXO70X3,EXO70B2,EXO70F4,EXO70FX5,EXO70B1,EXO70X7,EXO70D2,EXO70A2,EXO70A4,EXO70B3,EXO70X4,EXO70F2,EXO70C1,EXO70FX1,EXO70FX3,EXO70FX2,EXO70H2,EXO70FX14,EXO70X2,EXO70FX13,EXO70FX6,EXO70FX9,EXO70E1,EXO70FX8,EXO70A3,RLS2	OsEXO70F5, OsExo70F5, OrysaF5_Exo70,OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70,OsEXO70H3b, EXO70H3b, OsExo70H3b, OrysaH3b_Exo70,OsEXO70I1, OsExo70I1, OrysaI1_Exo70,OsEXO70FX15, OsExo70FX15, OrysaFX15_Exo70,OsEXO70G2, OsExo70G2, OrysaG2_Exo70,OsEXO70FX16, OsExo70FX16, OrysaFX16_Exo70,OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70,OsEXO70FX10, OsExo70FX10, OrysaFX10_Exo70,OsEXO70H1a, EXO70H1a, OsExo70H1a, OsEXO70H1b, EXO70H1b, OrysaH1_Exo70,OsEXO70FX12, OsExo70FX12, OrysaFX12_Exo70,OsEXO70FX11, OsExo70FX11, OrysaFX11_Exo70,OsEXO70C2, OsExo70C2, OrysaC2_Exo70,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,OsEXO70D1, OsExo70D1, OrysaD1_Exo70,OsEXO70G1, OsExo70G1, OrysaG1_Exo70,OsEXO70F1, OsExo70F1, OrysaF1_Exo70,OsEXO70X6, OsExo70X6, OrysaX6_Exo70,OsEXO70X5, OsExo70X5, OrysaX5_Exo70,OsEXO70FX7, OsExo70FX7, OrysaFX7_Exo70,OsEXO70X3, OsExo70X3, OrysaX3_Exo70,OsEXO70B2, OsExo70B2, OrysaB2_Exo70,OsEXO70F4, OsExo70F4, OrysaF4_Exo70,OsEXO70FX5, OsExo70FX5, OrysaFX5_Exo70,OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsEXO70X7, OsExo70X7, OrysaX7_Exo70,OsEXO70D2, OsExo70D2, OrysaD2_Exo70,OsEXO70A2, OsExo70A2, OrysaA2_Exo70,OsEXO70A4, OsExo70A4, OrysaA4_Exo70,OsEXO70B3, OsExo70B3, OrysaB3_Exo70,OsEXO70X4, OsExo70X4, OrysaX4_Exo70,OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,OsEXO70C1, OsExo70C1, OrysaC1_Exo70, OrysaE1_Exo70,OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70,OsEXO70FX3, OsExo70FX3, OrysaFX3_Exo70,OsEXO70FX2, OsExo70FX2, OrysaFX2_Exo70,OsEXO70H2, OsExo70H2, OrysaH2_Exo70,OsEXO70FX14, OsExo70FX14, OrysaFX14_Exo70,OsEXO70X2, OsExo70X2, OrysaX2_Exo70,OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70,OsEXO70FX6, OsExo70FX6, OrysaFX6_Exo70,OsEXO70FX9, OsExo70FX9, OrysaFX9_Exo70,OsEXO70E1, OsExo70E1,OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70,OsEXO70A3, OsExo70A3, OrysaA3_Exo70,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70
42714	22826714	Fatima Cvr?kov?, Grunt M., Bezvoda R., Michal H?la, Kulich I., Rawat A., Viktor Z?rsk?	Evolution of the land plant exocyst complexes.	Front Plant Sci	3	159	2012	EXO70X1,EXO70H3A,EXO70G2,EXO70H2,EXO70FX16,EXO70FX12,EXO70C2,EXO70FX11,EXO70H1,EXO70B1,EXO70X5,EXO70FX10,EXO70C1,EXO70X7,EXO70FX14,EXO70FX7,EXO70X4,EXO70I1,EXO70A4,EXO70A2,EXO70B3,EXO70G1,EXO70F4,EXO70H3B,EXO70FX4,RLS2,EXO70FX9,EXO70FX6,EXO70F1,EXO70F2,EXO70F3,EXO70FX8,EXO70FX2,EXO70FX1,EXO70X2,EXO70D1,EXO70F5,EXO70D2,EXO70X3,EXO70FX15,EXO70FX13,EXO70A3,EXO70X6,_,EXO70FX5,EXO70B2,EXO70FX3	OsEXO70X1, OsExo70X1, OrysaX1_Exo70, OsEXO70E1, OsExo70E1, EXO70E1,OsEXO70H3a, EXO70H3a, OrysaH3a_Exo70,OsEXO70G2, OsExo70G2, OrysaG2_Exo70,OsEXO70H2, OsExo70H2, OrysaH2_Exo70,OsEXO70FX16, OsExo70FX16, OrysaFX16_Exo70,OsEXO70FX12, OsExo70FX12, OrysaFX12_Exo70,OsEXO70C2, OsExo70C2, OrysaC2_Exo70,OsEXO70FX11, OsExo70FX11, OrysaFX11_Exo70,OsEXO70H1a, EXO70H1a, OsExo70H1a, OsEXO70H1b, EXO70H1b, OrysaH1_Exo70,OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsEXO70X5, OsExo70X5, OrysaX5_Exo70,OsEXO70FX10, OsExo70FX10, OrysaFX10_Exo70,OsEXO70C1, OsExo70C1, OrysaC1_Exo70, OrysaE1_Exo70,OsEXO70X7, OsExo70X7, OrysaX7_Exo70,OsEXO70FX14, OsExo70FX14, OrysaFX14_Exo70,OsEXO70FX7, OsExo70FX7, OrysaFX7_Exo70,OsEXO70X4, OsExo70X4, OrysaX4_Exo70,OsEXO70I1, OsExo70I1, OrysaI1_Exo70,OsEXO70A4, OsExo70A4, OrysaA4_Exo70,OsEXO70A2, OsExo70A2, OrysaA2_Exo70,OsEXO70B3, OsExo70B3, OrysaB3_Exo70,OsEXO70G1, OsExo70G1, OrysaG1_Exo70,OsEXO70F4, OsExo70F4, OrysaF4_Exo70,OsEXO70H3b, EXO70H3b, OsExo70H3b, OrysaH3b_Exo70,OsEXO70FX4, OsExo70FX4, OrysaFX4_Exo70,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70,OsEXO70FX9, OsExo70FX9, OrysaFX9_Exo70,OsEXO70FX6, OsExo70FX6, OrysaFX6_Exo70,OsEXO70F1, OsExo70F1, OrysaF1_Exo70,OsEXO70F2, OsExo70F2, OrysaF2_Exo70, OsExo70-F2, Exo70-F2,OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3,OsEXO70FX8, OsExo70FX8, OrysaFX8_Exo70,OsEXO70FX2, OsExo70FX2, OrysaFX2_Exo70,OsEXO70FX1, OsExo70FX1, OrysaFX1_Exo70,OsEXO70X2, OsExo70X2, OrysaX2_Exo70,OsEXO70D1, OsExo70D1, OrysaD1_Exo70,OsEXO70F5, OsExo70F5, OrysaF5_Exo70,OsEXO70D2, OsExo70D2, OrysaD2_Exo70,OsEXO70X3, OsExo70X3, OrysaX3_Exo70,OsEXO70FX15, OsExo70FX15, OrysaFX15_Exo70,OsEXO70FX13, OsExo70FX13, OrysaFX13_Exo70,OsEXO70A3, OsExo70A3, OrysaA3_Exo70,OsEXO70X6, OsExo70X6, OrysaX6_Exo70,OsSTA254, STA254 OsSEC3B, SEC3B ,OsEXO70FX5, OsExo70FX5, OrysaFX5_Exo70,OsEXO70B2, OsExo70B2, OrysaB2_Exo70,OsEXO70FX3, OsExo70FX3, OrysaFX3_Exo70
42715	0	Maria Gay C. Carrillo, Paul H. Goodwin, Jan E. Leach, Leung H., Casiana M. Vera Cruz	Phylogenomic Relationships of Rice Oxalate Oxidases to the Cupin Superfamily and Their Association with Disease Resistance QTL	Rice	2	67-79	2009	OXO2,OXO4,OXO3,OXO1	Osoxo4, OsOxO2, OsGLP3-4, GLP3-4,OsOxO4, OsGLP3-6, GLP3-6,OsOxO3, OsGLP3-5, GLP3-5,OsOxO1, OsGLP3-3, GLP3-3
42716	23275578	Petroni K., Roderick W Kumimoto, Gnesutta N., Calvenzani V., Fornari M., Tonelli C., Ben F Holt, Mantovani R.	The promiscuous life of plant NUCLEAR FACTOR Y transcription factors.	Plant Cell	24(12)	4777-92	2012	HAP3E,HAP2E,HAP3I,HAP3G,HAP3B,HD5,HAP3K,HAP5G,HAP5D,HAP2H,HAP3D,HAP2F,HAP5E,HAP3F,HAP2C,HAP2I,HAP5C,HAP2D,HAP5A,HAP2G,HAP2B,HAP2A,HAP3C,HAP2J,HAP5F,HAP3A,HAP3J,HAP5B	OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3
42717	0	Jia-Fu Jiang, Yun-Yuan Xu, Chong K.	Overexpression of OsJAC1, a Lectin Gene, Suppresses the Coleoptile and Stem Elongation in Rice	J Integr Plant Biol	49(2)	230-237	2007	_	OsJAC1, JAC1
42718	9744098	A Moons, R Valcke, M Van Montagu	Low-oxygen stress and water deficit induce cytosolic pyruvate orthophosphate dikinase (PPDK) expression in roots of rice, a C3 plant.	Plant J.	15(1)	89-98	1998	_,FLO4	osppdka, ppdka,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD
42719	23220941	Chen C., Chen H., Shan J.X., Zhu M.Z., Shi M., Gao J.P., Lin H.X.	Genetic and Physiological Analysis of a Novel Type of Interspecific Hybrid Weakness in Rice.	Mol Plant			2013	HWI1	25L1
42720	18507773	Koide Y., Onishi K., Nishimoto D., Akhil Ranjan Baruah, Kanazawa A., SANO Y.	Sex-independent transmission ratio distortion system responsible for reproductive barriers between Asian and African rice species.	New Phytol.	179(3)	888-900	2008	S1	
42721	15084732	Jos? C Reyes, M Isabel Muro-Pastor, Francisco J Florencio	The GATA family of transcription factors in Arabidopsis and rice.	Plant Physiol.	134(4)	1718-32	2004	GATA22,GATA21,GATA20,GATA7,GATA17,GATA3,GATA5,GATA25,GATA23,GATA28,GATA1 ,GATA26,GATA14,GATA2,GATA18 ,GATA24,GATA13,GATA16,GATA12,GATA8,CGA1,GATA4,GATA6,NL1,GATA27,GATA10,GATA19,GATA9	OsGATA22,OsGATA21,OsTIFY2b, TIFY2B, OsCCT24, OsGATA20,OsGATA7,OsTIFY2a, OsCCT04, OsGATA17, OsGATA17a, OsGATA17b,OsGATA3,OsGATA5,OsGATA25,OsGATA23, OsGATA23a, OsGATA23b,OsGATA28,OsGATA1, OsGATA6, GATA6,OsGATA26,OsGATA14,OsGATA2, OsGATA2a, OsGATA2b,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsGATA24,OsGATA13,OsGATA16, OsGNC, GNC,OsGATA12,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b,Cga1, OsCga1, OsCGA1, OsGATA11, GATA11,OsGATA4,OsGATA6, OsGATA1, GATA1,nl1, OsGATA15, GATA15,OsGATA27,OsGATA10,OsTIFY1b, TIFY1B, OsCCT15, OsGATA19, OsGATA19a, OsGATA19b,OsGATA9
42722	18676621	Sudo E., Itouga M., Kayo Yoshida-Hatanaka, Ono Y., Sakakibara H.	Gene expression and sensitivity in response to copper stress in rice leaves.	J. Exp. Bot.	59(12)	3465-74	2008	PAL1,_,_,_,_,_,PAL1,_,RBBI2-2,LOX11,_,RBBI3-1,CCR21,_,_,GSTU42,CHT5,_,MTI1A,_,_,_,_,_,POX22.3,_,_,_	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,CHI, OsCHI,OsLTP2.4, OsLtpII.4,prx61,,prx109, POX-2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,ZRP4, OsASMT2, ASMT2,RBBI2-2,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2,DIP3, XIP, OsHI-XIP, OsXIP2, XIP2,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4,OsCCR21 ,ZRP4, OMT, ASMT, OsASMT1, ASMT1,prx117,OsGSTU42,Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3,OsLTPG7, OsLTPg7,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,,OsLTP1.14, OsLtpI.14,prx16, OsPOD1, POD1,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,C4H2, OsC4H, OsC4HL, C4H,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsJAC1, JAC1,prx71, Osprx71,ROMT-17, ROMT17, CCoAOMT1
42723	15605239	Luo Q., Zhou K., Zhao X., Zeng Q., Xia H., Zhai W., Xu J., Wu X., Yang H., Zhu L.	Identification and fine mapping of a mutant gene for palealess spikelet in rice.	Planta	221(2)	222-30	2005		
42724	23603966	Yanagisawa S.	Characterization of a nitrate-inducible transcriptional repressor NIGT1 provides new insights into DNA recognition by the GARP family proteins.	Plant Signal Behav	8(6)	e24447	2013	NIGT1	
42725	17284836	Li S., Wook-Dong Kim, Kaneko S., Prukutty A Prema, Nakajima M., Kobayashi H.	Expression of rice (Oryza sativa L. var. Nipponbare) alpha-galactosidase genes in Escherichia coli and characterization.	Biosci. Biotechnol. Biochem.	71(2)	520-6	2007	_,_,_	alpha-Gal III,alphaGa1, alpha-Gal I,alpha-Gal II
42726	16041362	Vollbrecht E., Patricia S Springer, Goh L., Edward S Buckler, Martienssen R.	Architecture of floral branch systems in maize and related grasses.	Nature	436(7054)	1119-26	2005	_,_,_,_	,,,
42727	16132843	Bo-Ra Kim, Soo-Un Kim, Yung-Jin Chang	Differential expression of three 1-deoxy-D: -xylulose-5-phosphate synthase genes in rice.	Biotechnol. Lett.	27(14)	997-1001	2005	DXS3,DXS1,DXS2	OsDXS, OsDXS3, dxs3,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsDXS2, dxs2
42728	10945348	N Nishikubo, T Araki, S Kajita, K Kuroda, H Kitano, Y Katayama	Specific accumulation of polysaccharide-linked hydroxycinnamoyl esters in the cell walls of irregularly shaped and collapsed internode parenchyma cells of the dwarf rice mutant Fukei 71.	Plant Cell Physiol.	41(6)	776-84	2000	D12	d12(d50), dwf11, d50, d12, d32, F71, DMT9
42729	11577193	W Sakamoto, T Ohmori, K Kageyama, C Miyazaki, A Saito, M Murata, K Noda, M Maekawa	The Purple leaf (Pl) locus of rice: the Pl(w) allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis.	Plant Cell Physiol.	42(9)	982-91	2001	_,RA,PL	OsbHLH016, Kala4, OSB2,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2,Pl, Pl1
42730	0	Wang C., Wen G., Lin X., Liu X., Zhang D.	Identification and fine mapping of the new bacterial blight resistance gene, Xa31(t), in rice	Eur J Plant Pathol	123	235-240	2009	XA31	Xa31
42731	0	Choung-Ke ZHENG, Chun-Lian Wang, Yuan-Jie YU, Yun-Tao LIANG, Kai-Jun ZHAO	Identification and Molecular Mapping of Xa32(t), a Novel Resistance Gene for Bacterial Blight (Xanthomonas oryzae pv. oryzae) in Rice	Acta Agronomica Sinica	35(7)	1173-1180	2009	XA32	Xa32
42732	0	Yutaka SATO, Asuka NISHIMURA, Tomoaki SAKAMOTO, Motoyuki ASHIKARI, Makoto MATSUOKA	Isolation and characterization of a cDNA encoding an orthologue of ROUGH SHEATH 2 (OsRS2) from rice	Plant Biotechnology	19(1)	11-18	2002	_	OsMYB91, MYB91, OsRS2, RS2
42733	18945025	A Ghesqui?re, L Albar, M Lorieux, N Ahmadi, D Fargette, N Huang, S R McCouch, J L Notteghem	A major quantitative trait locus for rice yellow mottle virus resistance maps to a cluster of blast resistance genes on chromosome 12.	Phytopathology	87(12)	1243-9	1997		
42734	11874462	Shibahara T., Kawasaki H., Hirano H.	Identification of the 19S regulatory particle subunits from the rice 26S proteasome.	Eur. J. Biochem.	269(5)	1474-83	2002	RPT1B,RPN5,RPN2B,RPT1A,RPN1A,RPN3,RPN1B,_,RPN2A,RPT5B,RPN11,RPT2B,RPN8,RPT4A,_,RPT6,RPN7,RPN9B,RPN12,RPN6,RPT4B,_,RPT3,RPN9A	OsRpt1b, Rpt1b,OsRpn5, Rpn5,OsRpn2b, Rpn2b,OsRpt1a, Rpt1a ,OsRpn1a, Rpn1a,OsRpn3, Rpn3,OsRpn1b, Rpn1b,TBPOs-1, OsRpt5a, Rpt5a,OsRpn2a, Rpn2a,OsRpt5b, Rpt5b,OsRpn11, Rpn11,OsRpt2b, Rpt2b,OsRpn8, Rpn8,OsRpt4a, Rpt4a,TBPOs-2, OsRpt2a, Rpt2a,OsRpt6, Rpt6,OsRpn7, Rpn7 ,OsRpn9b, Rpn9b,OsRpn12, Rpn12,OsRpn6, Rpn6,OsRpt4b, Rpt4b,OsS5a, S5a, OsRpn10, Rpn10,OsRpt3, Rpt3,OsRpn9a, Rpn9a
42735	12582914	Wissuwa M., Wegner J., Ae N., Yano M.	Substitution mapping of Pup1: a major QTL increasing phosphorus uptake of rice from a phosphorus-deficient soil.	Theor. Appl. Genet.	105(6-7)	890-897	2002	PSTOL1	Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42736	16077027	Sunkar R, Girke T, Zhu JK.	Identification and characterization of endogenous small interfering RNAs from rice.	Nucleic Acids Res.	33(14)	4443-54.	2005	P102-F11,P52-C8,P106-G11,P91-C7,P30-A8,P87-B1,P71-H12,P93-H6,P96-A3,P56-D5,P76-D11,P95-E5,P95-D12,P99-H8,P63-E1,P96-E12,P99-A2,P75-C1,P104-C7,P33-G4,P78-E8,P106-F8,P106-E12,P89-F6,P96-F7,P101-B7,P83-G5,P100-B10,P86-F9,P88-A11,P67-B5,P71-G7,P89-B2,P93-A5,P96-B9,P108-B2,P85-F8,P86-H10,P60-F7,P98-G12,P6-A9,P97-E3,P103-B2,P7-A4,P92-C3,P88-C3,P88-F11,P89-D4,P87-A3,P107-H11,P97-D1,P5-C5,P79-E1,P107-H12,P98-D2,P17-F4,P101-G7,P89-B12,P89-C3,P96-B3,P104-A3,P94-A5,P5-D6,P83-D5,P87-H6,P81-B6,P90-B6,P108-F10,P77-D6,P109-C6,P87-C2,P34-A10,P97-E9,P81-B3,P8-G3,P105-D8,P107-H3,P76-G8,P108-H10,P84-H6,P101-C11,P99-F3,P109-F3,P50-B5,P83-H4,P108-A5,P101-H2,P15-D7,P97-A1,P90-A12,P102-A5,P93-G6,P8-C12,P86-E8,P90-B9,P108-D3,P100-D3,P79-E11,P107-F1,P98-A9,P20-G5,P102-G9,P108-D1,P33-D12,P89-G8,P56-B2,P93-D6,P109-A11,P109-D12,P33-A2,P16-C3,P104-F1,P85-B2,P15-A5,P94-E8,P87-G9,P72-E12,P15-E7,P61-A1,P107-F10,P16-G8,P81-F4,P77-F8,P88-H6,P88-B4,P89-G12,P90-A5,P89-E6,P99-H3,P91-E11,P91-A1,P83-A5,P93-C6,P97-F12,P91-D8,P91-A11,P82-F7,P104-E2,P98-G6,P99-B4,P99-C8,P85-B12,P40-D12,P98-A8,P98-G5,P83-H10,P104-C8,P72-H3,P94-D12,P94-G1,P63-G7,P75-D3,P81-H7,P81-G4,P76-B12,P79-E7,P78-C6,P65-B8,P77-G8,P76-H3,P72-H5,P66-B12,P85-B9,P72-F7,P9-G1,P91-E4,P97-F4,P97-B2,P92-A3,P95-D5,P107-B10,P72-A8,P77-C12,P102-C12,P105-H8,P70-D1,P84-H4,P40-H12,P100-E1,P9-F11,P103-F8,P103-H2,P102-F10,P102-F3,P89-F12,P88-A6,P8-E2,P101-A9,P99-B3,P85-F2,P89-E12,P83-C9,P104-F8,P104-G7,P108-A7,P105-E10,P86-A3,P84-D12,P107-E1,P96-H6,P96-C9,P5-B6,P33-H10,P7-E5,P35-D10,P89-H6,P4-D6,P72-G12,P49-E4,P38-B7,P89-E2,P84-F11,P28-E3,P90-B8,P79-D15,P1-C04,P72-E1,P30-G6,P31-G9,P63-A8,P82-E5,P83-D4,P84-H3,P26-B8,P56-E5,P96-C4,P85-B1,P84-H5,P102-D7,P80-B3,P18-F10,P1-B06,P15-F8,P81-C7,P89-H4,P101-B12,P109-E3,P108-H5,P108-G3,P91-D9,P92-A9,P100-H11,P68-H2,P100-F11,P84-C2,P99-D11,P81-G1,P56-H4,P91-H7,P83-B2,P79-B1,P102-E6,P77-B10,P91-F12,P8-F8,P86-D6,P30-G4,P79-H4,P99-G11,P103-G3,P91-A5,P86-E3,P107-G2,P46-C11,P77-C11,P88-F10,P97-B5,P107-E2,P104-A10,P105-G11,P98-B9,P87-C5,P4-G9,P107-A9,P85-D8,P1-02,P108-B7,P29-A12,P85-C7,P77-H6,P89-H1,P86-G10,P108-F5,P106-B5	null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null,null
42738	14678782	Shibahara T., Kawasaki H., Hirano H.	Mass spectrometric analysis of expression of ATPase subunits encoded by duplicated genes in the 19S regulatory particle of rice 26S proteasome.	Arch. Biochem. Biophys.	421(1)	34-41	2004	RPT1B,RPT1A,_,RPT6,RPT3,RPT4B,_,RPT4A,RPT2B,RPT5B	OsRpt1b, Rpt1b,OsRpt1a, Rpt1a ,TBPOs-1, OsRpt5a, Rpt5a,OsRpt6, Rpt6,OsRpt3, Rpt3,OsRpt4b, Rpt4b,TBPOs-2, OsRpt2a, Rpt2a,OsRpt4a, Rpt4a,OsRpt2b, Rpt2b,OsRpt5b, Rpt5b
42739	24203021	H Hasegawa, T Katagiri, S Ida, O Yatou, M Ichii	Characterization of a rice (Oryza sativa L.) mutant deficient in the heme domain of nitrate reductase.	Theor. Appl. Genet.	84(1-2)	6-9	1992	NADH-NR	
42740	24241451	J C Glaszmann	Isozymes and classification of Asian rice varieties.	Theor. Appl. Genet.	74(1)	21-30	1987		
42741	0	Pradhan S.B., Jachuck P.J.	Development of new cytoplasmic source of male sterile lines in rice for shallow lowland	Euphytica	111	43-46	2000	[CMS-MIZ4]	[cms-Miz4]*, [cms-Miz4]
42742	0	J. Ni J., WU P., Senadhira D., Huang N.	Mapping QTLs for phosphorus deficiency tolerance in rice (Oryza sativa L.)	Theor. Appl. Genet.	97	1361-1369	1998	PSTOL1	Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42743	0	MatthiasWissuwa, Ae N.	Further characterization of two QTLs that increase phosphorus uptake of rice (Oryza sativa L.) under phosphorus deficiency	Plant Soil	237	275-286	2001	PSTOL1	Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42744	0	WISSUWA M., Ae N.	Genotypic variation for tolerance to phosphorus de?ciency in rice and the potential for its exploitation in rice improvement	Plant Breeding	120	43-48	2001	PSTOL1	Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
42745	0	Suzuki Y., SANO Y., Hiro-Yuki Hirano	Isolation and characterization of a rice mutant insensitive to cool temperatures on amylose synthesis	Euphytica	123	95-100	2002	WX1,COI	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,
42746	0	Rutger J.N.	Induction of photoperiod sensitive genetic male steriles for use in hybrid rice seed production	Euphytica	120	399-400	2001	_,_,_	ms,Ms,Ms
42747	0	Reddy O.U.K., Siddiq E.A., Sarma N.P., Ali J., Hussain A.J., Nimmakayala P., Ramasamy P., Pammi S., Reddy A.S.	Genetic analysis of temperature-sensitive male sterilty in rice	Theor. Appl. Genet.	100	794-801	2000	_	tms4(t), tms4
42748	0	Nakamura Y., Umemoto T., Takahata Y., Komae K., Amano E., Satoh H.	Changes in structure of starch and enzyme activities affected by sugary mutations in developing rice endosperm. Possible role of starch debranching enzyme (R-enzyme) in amylopectin biosynthesis	Physiol Plant	97(3)	491-498	1996	SBE4,PUL,SBE1,SUG,SBE3	RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,OsPUL, SDBE, OsPUL3, RE,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,sug(su), su, sug1, su1, su-1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
42749	0	Gao L., Ge S., Hong D., Lin R., Tao G., Xu Z.	Allozyme variation and conservation genetics of common wild rice (Oryza rufipogon Griff.) in Yunnan, China	Euphytica	124	273-281	2002		
42750	0	Latha R., Thiyagarajan K., Senthilvel S.	Genetics, fertility behaviour and molecular marker analysis of a new TGMS line, TS6, in rice	Plant Breeding	123	235-240	2004	_	TGMS
42751	0	Ni J., Colowit P.M., Oster J.J., Xu K., Mackill D.J.	Molecular markers linked to stem rot resistance in rice	Theor. Appl. Genet.	102	511-516	2001	_,_	,
42752	0	Nakamura Y., Kubo A., Shimamune T., Matsuda T., Harada K., Satoh H.	Correlation between activities of starch debranching enzyme and alpha-polyglucan structure in endosperms of sugary-1 mutants of rice	The Plant Journal	12(1)	143-153	1997	PUL,SUG	OsPUL, SDBE, OsPUL3, RE,sug(su), su, sug1, su1, su-1
42753	0	Sakae ARASE, Chang-Min ZHAO, Kazuya AKIMITSU, Mikihiro YAMAMOTO, Masahiko ICHII	A Recessive Lesion Mimic Mutant of Rice with Elevated Resistance to Fungal Pathogens	Journal of General Plant Pathology	66(2)	109-116	2000	_	
42754	0	Rutger J.N., Mackill D.J.	Application of Mendelian genetics in rice breeding	Rice Genetics, IV. IRRI, Manila, Philippines		27-38	2001	SD1,PL,BPH2,SE3,PITA,SE1,EUI1,SUB1,BPH1,XA4	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Pl, Pl1,bph2,Se3(t), Se3,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,Sub1, Sub1(Sub1A,Sub1B,Sub1C), Sub1A, Sub1B, Sub1C, Sub1,Bph1,Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4
42755	0	Nakamura Y, Umemoto T, Takahata Y, Amano E	Characteristics and roles of key enzymes associated with starch biosynthesis in rice endosperm	Gamma Field Symp.	31	25-44	1992	PUL,SBE4,SUG,SBE1,SBE3	OsPUL, SDBE, OsPUL3, RE,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa,sug(su), su, sug1, su1, su-1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
42756	0	Kawahigashi-H, Ozawa-K, Ohkawa-Y	RFLP analysis of Koshihikari isogenic lines with high ability of regeneration	Breeding. Res.	3(suppl. 2)	10	2001		
42757	0	Arimura-M, Taketa-S, Ma-J-F, Wu-G-F, Tamai-K, Ichii-M	Molecular mapping of a gene for Si uptake in rice	Breeding Res.	4(Suppl. 1)	73	2002	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
42758	12481095	Jian Feng Ma, Tamai K., Ichii M., Guo Feng Wu	A rice mutant defective in Si uptake.	Plant Physiol.	130(4)	2111-7	2002	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
42759	0	Ueda-Y, Takemoto-Y, Sato-M, Kumamaru-T, Tanaka-K, Ohtsubo-K, Ogawa-M, Satoh-H	Histochemical analysis of PBs in endosperm cells of developing seed for a novel 57H mutant, glup7	Breeding Res.	6(Suppl.2)	180	2004	GLUP7	Glup7
42760	0	Mori-M, Tomita-C, Hasegawa-M, Hayashi-N, Sugimoto-K, Sekimoto-H, Hirochika-H, Kikuchi-S	Isolation of a lesion mimic mutant and a short grain mutant by rice activation tagging and analyses of causative genes	Breeding Res.	6(Suppl.2)	102	2004	LMM1,SG1	Lmm1, OsACT1,OsSG1, Sg1
42761	0	Horiuchi-Y, Onishi-K, Sano-Y	A semi-dwarf gene detected from an annual form of wild rice	Breeding Res.	6(Suppl.2)	174	2004		
42762	0	Suzuki-Y, Hirasawa-H, Ikeda-R, Ise-K, Sato-H, Ishikawa-T	Genetic analysis of a rice mutant, "KT95" on which morphological change of leaf blade from normal to narrow and rolled occurred on specific leaf position	Breeding Res.	6(Suppl.2)	265	2004	_	
42763	0	Shimizu-A, Kato-K, Shishido-R, Nomura-K, Ikehashi-H	Phosphorus- deficiency-induced root elongation in rice 2. Confirmation of detected QTL regions using chromosome segment substitution lines	Breeding Res.	6(Suppl.2)	313	2004		
42764	0	Nakamura-Y	Some properties of starch debranching enzymes and their possible role in amylopectin biosynthesis	Plant Science	121	1-18	1996	SBE1,SUG,PUL,SBE3	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,sug(su), su, sug1, su1, su-1,OsPUL, SDBE, OsPUL3, RE,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
42765	10517831	Kubo A., Fujita N., Harada K., Matsuda T., Satoh H., Nakamura Y.	The starch-debranching enzymes isoamylase and pullulanase are both involved in amylopectin biosynthesis in rice endosperm	Plant Physiol.	121(2)	399-410	1999	SUG,PUL,ISA1	sug(su), su, sug1, su1, su-1,OsPUL, SDBE, OsPUL3, RE,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1
42766	10634784	X Ye, S Al-Babili, A Kl?ti, J Zhang, P Lucca, P Beyer, I Potrykus	Engineering the provitamin A (beta-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm.	Science	287(5451)	303-5	2000		
42767	11206853	L Gao, W Chen, W Jiang, S Ge, D Hong, X Wang	Genetic erosion in northern marginal population of the common wild rice Oryza rufipogon Griff. and its conservation, revealed by the change of population genetic structure.	Hereditas	133(1)	47-53	2000		
42768	0	Zhao-C-M, Hasegawa-H, Ichii-M	A Chlorate Resistant Mutant of Rice (Oryza sativa L.) with Normal Nitrate Uptake and nitrate reductase Activity	Breed. Sci.	50(1)	9-15	2000	_	
42769	0	Hasegawa H, Yatou O, Katagiri T, Ichii M	Screening for nitrate reductase-deficient mutants in rice (Oryza sativa L.)	Japanese Society of Breeding	41(1)	95-101	1991	_,NADH-NR	,
42770	0	L.-z. Gao, G. De-y. Hong S.	Allozyme variation and population genetic structure of common wild rice Oryza rufipogon Griff. in China	Theor. Appl. Genet.	101	494-502	2000		
42771	0	Li Z., Rutger J.N.	Geographic distribution and multilocus organization of isozyme variation of rice (Oryza sativa L.)	Theor. Appl. Genet.	101	379-387	2000		
42772	0	Ahmadi-N, Albar-L, Pressoir-G, Pinel-A, Fargette-D, Ghesquiere-A	Genetic basis and mapping of the resistance to Rice yellow mottle virus. III. Analysis of QTL efficiency in introgressed progenies confirmed the hypothesis of complementary epistasis between two resistance QTLs	Theoretical and Applied Genetics	103	1084-1092	2001		
42773	0	Li-R, Pandey-M-P	Complex nature of inheritance of thermosensitive genic male sterility (TGMS) in rice	Chinese Rice Res. Newslett.	9(3)	6-7	2001	_,_,_	tms7,tms6,tms5
42774	10887680	S G Li, Y Q Ma, W M Wang, G Q Liu, K D Zhou, L H Zhu	[Molecular tagging of a new recessive gene for late heading in a rice cultivar 8987].	Yi Chuan Xue Bao	27(2)	133-8	2000	_	lf-3(t), lf-3, lf3
42775	0	Gao-D, Xiang-Y, Sun-L, Lu-Z	Tagging RAPD markers to a bacterial blight resistance gene in rice	Chinese Rice Res. Newslett.	9(3)	2	2001	XA25	Xa25(t), Xa25*, Xa25, Xa-25(t)
42776	0	Nakamura Y., Takeichi T., Kawaguchi K., Yamanouchi H.	Purification of two forms of starch branching enzyme (Q-enzyme) from developing rice endosperm	Physiol Plant	84(3)	329-335	1992	SBE1,SBE3,SBE4	sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
42777	0	Uga-Y, Nonoue-Y, Liang-Z-W, Lin-H, ano-M	Advanced backcross QTL analysis of loci associated with heading date in an extremely late heading variety Nona Bokra	Breeding Res.	6(Suppl.2)	269	2004		
42778	0	Pradhan-S-B, Jachuck-P-J	Genetics of fertility restoration of elite lines for different cytoplasmic male sterile sources in rice	Oryza (Cuttack)	36(4)	374-376	1999	[CMS-KALINGA-I],[CMS-WA]	[cms-Kalinga-I]*, [cms-Kalinga-I],[cms-WA]
42779	27172610	Kubo T., Yoshimura A., Kurata N.	pollen Killer Gene S35 Function Requires Interaction with an Activator That Maps Close to S24, Another pollen Killer Gene in Rice.	G3 (Bethesda)	6(5)	1459-68	2016	S24,INK,EFS,S31,S35	S24(t), S24(t)*, Sb, F5-Du,,,S31-gi,S31-un,S31-n,S31(t),
42780	19282622	Kubo T., Yamagata Y., Eguchi M., Yoshimura A.	A novel epistatic interaction at two loci causing hybrid male sterility in an inter-subspecific cross of rice (Oryza sativa L.).	Genes Genet. Syst.	83(6)	443-53	2008	S35,S24	,S24(t), S24(t)*, Sb, F5-Du
42781	0	LI Wentao, ZENG Ruizhen, ZHANG Zemin, DING Xiahua, ZHANG guiquan	Fine mapping of locus S-b for F1 pollen sterility in rice (Oryza sativa L.)	Chinese Science Bulletin	51(6)	675-680	2006	SB	Sb*, Hst17, S24, F5-Du
42782	0	SHI LeiGang, LIU XianDong, LIU Bo, ZHAO XingJuan, WANG Lan, LI JinQuan, LU YongGen	Identifying neutral allele Sb at pollen sterility loci in cultivated rice with Oryza rufipogon origin	Chinese Science Bulletin	54(20)	3813-3821	2009	SB	Sb*, Hst17, S24, F5-Du
42783	11480174	X J Deng, K D Zhou, R D Li, P Li, G S Huang, Z Chun	[Genetic analysis of dominant earliness of rice genic male sterile line 6442S-7].	Yi Chuan Xue Bao	28(7)	628-34	2001	SUEFCD	Su-Ef-cd(t), Su-Ef-cd
42784	0	Rao-O-P, Misro-B	Linkage studies in rice (Oryza sativa L.). lX. Inheritance and interrelationships of genes governing panicle type, grain arrangement and other characters	Indian J. Agric. Sci.	38	690-695	1968	BB*,PD,BA*	Bb*, B(b),Pd, Pd(a), Pd(b),Ba*, B(a)
42785	17031545	Rouhier N., Christina Vieira Dos Santos, Tarrago L., Rey P.	Plant methionine sulfoxide reductase A and B multigenic families.	Photosyn. Res.	89(2-3)	247-62	2006	_,_,_,_,_,_,_	OsMSRB3, MSRB3,OsMSR1, MSR1, OsMSRB5, MSRB5,OsMSRA4, MSRA4, OsMSRA4.1, MSRA4.1,OsMSRA2.2, MSRA2.2,OsMSRB1, MSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1,OsMSRA2.1, MSRA2.1,OsMSRA5, MSRA5
42786	27071131	Canturk F., Karaman M., Selby C.P., Kemp M.G., Kulaksiz-Erkmen G., Hu J., Li W., Lindsey-Boltz LA., Sancar A.	Nucleotide excision repair by dual incisions in plants.	Proc. Natl. Acad. Sci. U.S.A.	113(17)	4706-10	2016		
42787	27081183	Singh P., Sinha A.K.	A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts submergence tolerance in Rice.	Plant Cell			2016	SUB1A,MSRMK2,SMG1,SLRL1,_,SLR1	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsDPK1, DPK1, MKKK32, OsMKKK32, MAPKKK32,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
42788	27121815	Callaway E.	Devastating wheat fungus appears in Asia for first time.	Nature	532(7600)	421-2	2016		
42789	27081181	Li S., Zhao Y., Zhao Z., Wu X., Sun L., Liu Q., Wu Y.	Crystal structure of the GRAS domain of SCARECROW-LIKE 7 in Oryza sativa.	Plant Cell			2016	GRAS19	OsSCRL, SCRL, Os-SCL7, OsSCL7, SCL7, OsGRAS-19, OsGRAS19, GRAS-19
42790	27071313	Huang C.K., Sie Y.S., Chen Y.F., Huang T.S., Lu C.A.	Two highly similar DEAD box proteins, OsRH2 and OsRH34, homologous to eukaryotic initiation factor 4AIII, play roles of the exon junction complex in regulating growth and development in rice.	BMC Plant Biol.	16(1)	84	2016	_,GAMYB,UDT1,_,_,_,SD1	OsRH2, RH2, eIF4A-3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsRH34, RH34,OsMAGO1, MAGO1,OsY14b, Y14b,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
42791	27208230	Wu L., Ren D., Hu S., Li G., Dong G., Jiang L., Hu X., Ye W., Cui Y., Zhu L., Hu J., Zhang G., Gao Z., Zeng D., Qian Q., Guo L.	Mutation of OsNaPRT1 in the NAD Salvage Pathway Leads to Withered Leaf Tips in Rice.	Plant Physiol.			2016	_,NaPRT2,_,LTS1 ,_,_,NIC,_	osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,OsNaPRT2,OsI57, I57, OsKAT1, KAT1,OsNaPRT1, OsNaPRT1/LTS1, NaPRT1,Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2,Osh69,OsNIC,Osh36, OsH36, H36, OsAMTR1, AMTR1
42792	27208309	Araus V., Vidal E.A., Puelma T., Alamos S., Mieulet D., Guiderdoni E., Guti?rrez RA.	Members of BTB gene family regulate negatively nitrate uptake and nitrogen use efficiency in Arabidopsis thaliana and Oryza sativa.	Plant Physiol.			2016	_	OsBT, BT
42793	27181944	Zhang H., Lu Y., Zhao Y., Zhou D.X.	OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression.	Plant Sci.	248	28-36	2016	HDAC10,RSR1,_,HDAC6	OsHDAC10,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,OsHDAC6
42794	27121038	Byeon Y., Lee H.Y., Back K.	Cloning and characterization of the serotonin N-acetyltransferase-2 gene (SNAT2) in rice (Oryza sativa).	J. Pineal Res.			2016	SNAT1,SNAT2	OsSNAT1, OsSNAT, SNAT,OsSNAT2 
42795	27061371	Begum M.C., Islam M.S., Islam M., Amin R., Parvez M.S., Kabir A.H.	Biochemical and molecular responses underlying differential arsenic tolerance in rice (Oryza sativa L.).	Plant Physiol. Biochem.	104	266-277	2016	ACR2.1,PCS1,PT4,PT8,PHO1;2	CDC25.1, OsACR2.1, OsStr20, STR20,OsPCS1, OsPCS2, PCS2 ,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPHO1;2
42796	27107174	Li S., Gao F., Xie K., Zeng X., Cao Y., Zeng J., He Z., Ren Y., Li W., Deng Q., Wang S., Zheng A., Zhu J., Liu H., Wang L., Li P.	The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size.and yield in Rice.	Plant Biotechnol. J.			2016	MIR396C,GS2,_	miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,OsGIF1, GIF1
42797	27118216	Hwang S.G., Kim J.J., Lim S.D., Park Y.C., Moon J.C., Jang C.S.	Molecular dissection of Oryza sativa salt-induced RING finger protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.	Physiol Plant			2016	_,_,HIRP1,_,RDCP2,PPS,_,_,_,EBR1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,SADR1,_,_,HIP1,_,_,_,_,_,_,_,_,APIP10,_,_,_,_,_	OsRFP, OsSIRP2, SIRP2,OsRFP ,OsRFP, OsHIRP1,OsRFP ,OsRDCP2,OsWD40-55, OsCOP1, COP1,OsRFP ,OsRFP ,OsRFP,OsRFP ,OsRFP ,OsRFP ,OsRFP ,OsRFP ,OsSTA11, OsRFP,OsRFP ,OsRFP ,OsBRCA1,OsRFP ,OsRFP ,OsRFP,OsRFP ,OsRFP ,OsRFP ,OsRFP, OsZFP1 ,OsRFP, OsMAR1, MAR1,OsRFP, OsSADR1,OsRFP ,OsRFP ,OsHIP1, HAF1, OsHAF1,OsRFP ,OsRFP,OsRFP,OsRFP ,OsRFP ,OsRFP ,OsRFP ,OsRFP ,OsAPIP10,OsRFP,OsSIRP1, SIRP1 ,OsRFP, RFP, OsAIR2, AIR2 ,OsRFP,OsRFP 
42798	27208272	Liu J., Chen X., Liang X., Zhou X., Yang F., Liu J., He S.Y., Guo Z.	Alternative splicing of rice WRKY62 and WRKY76 transcription factor genes in pathogen defense.	Plant Physiol.			2016	PAL1,PR1A,CPS2,MAS,_,WRKY76,WRKY62,CPS4,PR10A,CYP71Z7	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 ,PR1b,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Oscyp71Z7
42799	27097755	Muthamilarasan M., Mangu V.R., Zandkarimi H., Prasad M., Baisakh N.	Structure, organization and evolution of ADP-ribosylation factors in rice and foxtail millet, and their expression in rice.	Sci Rep	6	24008	2016	ARFA1C,ARFC1,SAR1B,GB1B,SAR1C,SAR1A,_,ARFA1E,_,_,ARF3,ARFB1C,_,_,ARFB1D,ARFB1B,ARFB1A,GB1A,TTN5,_,_	OsARFA1c, ARFA1c,OsARFC1, ARFC1,OsARL1f, ARL1f, OsSar1b, Sar1b,OsGB1b, GB1b,OsARL1d, ARL1d, OsSar1c, Sar1c,OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a,OsARFA1d, ARFA1d,OsARFA1e, ARFA1e,OsARFA1a, ARFA1a,OsARL1a, ARL1a,OsARF3, ARF3,OsARFB1c, ARFB1c,OsARFA1f, ARFA1f,OsSAR1, SAR1, OsARL1c, ARL1c, OsSar1d, Sar1d,OsARFB1d, ARFB1d,OsARFB1b, ARFB1b,OsARFB1a, ARFB1a,OsGB1a, GB1a,OsTTN5, TTN5,OsARL1b, ARL1b,ARF, ARF1, OsARFA1b, ARFA1b
42800	27119209	Srivastava A.K., Zhang C., Sadanandom A.	Rice OVERLY TOLERANT TO SALT 1(OTS1) SUMO protease is a positive regulator of seed germination and root development.	Plant Signal Behav		0	2016	OTS1	OsOTS1
42801	27052628	Wang L., Ye, Liu H., Liu X., Wei C., Huang Y., Liu Y., Tu J.	Both overexpression and suppression of an Oryza sativa NB-LRR-like gene OsLSR result in autoactivation of immune response and thiamine accumulation.	Sci Rep	6	24079	2016	_,_,_,PR5,_,PR1A,DR8,DXS1,PR10A,_,PR4	Oschib1, PR-8, PR8, OsPR8,PAD4, OsPAD4,OsTK, TK,OsPR5, Pir2, PR-5, PR5-1,OsLSR, LSR,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsDR8, OsXNP, FOXRED1,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsTHIC, THIC,OsPR4, OsPR4a, PR4a, OsPR-4
42802	27121976	Garroum I., Bidzinski P., Daraspe J., Mucciolo A., Humbel B.M., Morel J.B., Nawrath C.	Cuticular Defects in Oryza sativa ATP-binding cassette Transporter G31 Mutant Plants Cause Dwarfism, Elevated Defense Responses and Pathogen Resistance.	Plant Cell Physiol.			2016	PDR6	OsPDR6, OsABCG31, OsABCG31_1
42803	27095382	Tang W., Wu T., Ye J., Sun J., Jiang Y., Yu J., Tang J., Chen G., Wang C., Wan J.	SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice.	BMC Plant Biol.	16(1)	93	2016	MIRF10422-AKR,CYP704A3	osa-miRf10422-akr, miRf10422-akr,OsCYP704A3
42804	27079330	Pirzadeh S., Shahpiri A.	Functional characterization of a type 2 metallothionein isoform (OsMTI-2b) from rice.	Int. J. Biol. Macromol.	88	491-6	2016		
42805	27174139	Verma P.K., Verma S., Meher A.K., Pande V., Mallick S., Bansiwal A.K., Tripathi R.D., Dhankher O.P., Chakrabarty D.	Overexpression of rice glutaredoxins (OsGrxs) significantly reduces arsenite accumulation by maintaining glutathione pool and modulating aquaporins in yeast.	Plant Physiol. Biochem.	106	208-217	2016		
42806	27108205	Wang Y., Wang D., Gan T., Liu L., Long W., Wang Y., Niu M., Li X., Zheng M., Jiang L., Wan J.	CRL6, a member of the CHD protein family, is required for crown root development in rice.	Plant Physiol. Biochem.	105	185-194	2016	_	OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL6
42807	27091552	Song A., Xue G., Cui P., Fan F., Liu H., Yin C., Sun W., Liang Y.	The role of silicon in enhancing resistance to bacterial blight of hydroponic- and soil-cultured rice.	Sci Rep	6	24640	2016	PAL1,CHT8,CATA,_,_,PR1A,_	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,Osj3g1BTF3, BTF3a, Os03g1BTF3,,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
42808	27156135	Nair A., Agarwal R., Chittela R.K.	Biochemical characterization of plant RAD52 protein from rice (Oryza sativa).	Plant Physiol. Biochem.	106	108-117	2016	RAD52-2A	OsRad52-2a
42809	26977084	Gao S., Fang J., Xu F., Wang W., Chu C.	Rice HOX12 Regulates panicle exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.	Plant Cell	28(3)	680-95	2016	EUI1,HOX12	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,Oshox12, OsHox12
42810	27006487	Tong H., Chu C.	Reply: Brassinosteroid Regulates Gibberellin Synthesis to Promote Cell Elongation in Rice: Critical Comments on Ross and Quittenden's Letter.	Plant Cell	28(4)	833-5	2016	D11,SLR1,BRD1,D18,_,DLT,BZR1	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsBZR1, Os BZR1
42811	26941088	Yang C., Hu H., Ren H., Kong Y., Lin H., Guo J., Wang L., He Y., Ding X., Grabsztunowicz M., Mulo P., Chen T., Liu Y., Wu Z., Wu Y., Mao C., Wu P., Mo X.	LIGHT-INDUCED RICE1 Regulates Light-Dependent Attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the Thylakoid Membrane in Rice and Arabidopsis.	Plant Cell	28(3)	712-28	2016	STR12,_,_,_,LIR1	OsStr12, Str12, TROL, Os-TROL, OsTROL,OsLFNR2, LFNR2, FNR, LFNR1, Os-LFNR1, OsLFNR1,OsLFNR1, LFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR,TIC62, Os-TIC26, OsTIC26,Lir1, OsLIR1, Os-LIR1
42812	26950093	Si L., Chen J., Huang X., Gong H., Luo J., Hou Q., Zhou T., Lu T., Zhu J., Shangguan Y., Chen E., Gong C., Zhao Q., Jing Y., Zhao Y., Li Y., Cui L., Fan D., Lu Y., Weng Q., Wang Y., Zhan Q., Liu K., Wei X., An K., An G., Han B.	OsSPL13 controls grain size in cultivated rice.	Nat. Genet.	48(4)	447-56	2016	LK3,TID1,GLW7 	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, ,OsSPL13, SPL13
42813	26883752	Qin H., Deng Z., Zhang C., Wang Y., Wang J., Liu H., Zhang Z., Huang R., Zhang Z.	Erratum to: Rice GDP-mannose pyrophosphorylase OsVTC1-1 and OsVTC1-3 play different roles in ascorbic acid synthesis.	Plant Mol. Biol.	90(4-5)	533	2016		
42814	26940322	Kadotani N., Akagi A., Takatsuji H., Miwa T., Igarashi D.	Exogenous proteinogenic amino acids induce systemic resistance in rice.	BMC Plant Biol.	16(1)	60	2016	AOC,NH1,WRKY45	OsAOC, AOC1, OsAOC1, HB, CPM2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsWRKY45
42815	26936408	Sun P., Zhang W., Wang Y., He Q., Shu F., Liu H., Wang J., Wang J., Yuan L., Deng H.	OsGRF4 controls grain shape, panicle length and seed shattering in rice.	J Integr Plant Biol			2016	GS2,GN1A,CKX1,CKX5,GS5	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsCKX1,OsCKX5, ckx5,OsSCP26, SCP26, OsGS5
42816	26960731	Wang H., Hu Q., Tang D., Liu X., Du G., Shen Y., Li Y., Cheng Z.	OsDMC1 Is Not Required for Homologous Pairing in Rice Meiosis.	Plant Physiol.	171(1)	230-41	2016	DMC1B,DMC1A,_	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,HEI10, HEI10A, HEI10B, OsHEI10
42817	26987457	Petla B.P., Kamble N.U., Kumar M., Verma P., Ghosh S., Singh A., Rao V., Salvi P., Kaur H., Saxena S.C., Majee M.	Rice PROTEIN l-ISOASPARTYL METHYLTRANSFERASE isoforms differentially accumulate during seed maturation to restrict deleterious isoAsp and reactive oxygen species accumulation and are implicated in seed vigor and longevity.	New Phytol.			2016	PIMT2,PIMT1	OsPIMT2, OsPIMT2'-1, OsPIMT2'-2, deltaOsPIMT2,OsPIMT1, OsPIMT1'
42818	26986930	Nounjan N., Siangliw J.L., Toojinda T., Chadchawan S., Theerakulpisut P.	Salt-responsive mechanisms in chromosome segment substitution lines of rice (Oryza sativa L. cv. KDML105).	Plant Physiol. Biochem.	103	96-105	2016		
42819	27000976	Malik N., Dwivedi N., Singh A.K., Parida S.K., Agarwal P., Thakur J.K., Tyagi A.K.	An Integrated Genomic Strategy Delineates Candidate Mediator Genes Regulating grain size and Weight in Rice.	Sci Rep	6	23253	2016	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,CDKE;1,_,_,_,_,_,_,_,_,_,_,_,_,HSP71.1,_,_,_,_,_,_,_,_,_,_,_,_,CTHSP70-1,_,_,_,_,_,_,_,RLCK305,_	OsMed26_1, Med26_1,OsHSP70, hsp70, OsMed37_4, Med37_4 ,OsMED7, MED7, OsMed7_1, Med7_1 ,OsMed11_2, Med11_2,OsCycC_1, CycC_1,OsMed36_1, Med36_1 ,OsMed5_1, Med5_1,OsMed35_1, Med35_1 ,OsMED21, MED21, OsMed21_1, Med21_1,OsMED6, MED6, OsMed6_1, Med6_1 ,OsRecQl4, RecQl4, OsMed34_1, Med34_1 ,OsTFIIS-like gene, OsMed26_3, Med26_3,OsMED20_1, MED20_1 ,OsMED9, MED9, OsMED9_1, MED9_1 ,OsMed30_1, Med30_1,OsBiP5, OsBiP, BiP, BiP5, OsMed37_7, Med37_7,OsMED15_1, MED15_1, OsKIX_3, KIX_3,OsMed13_1, Med13_1,OsMED12_2, MED12_2,CDKE;1, Orysa;CDKE;1, OsCdk8_1, Cdk8_1 ,OsMed12_1, Med12_1,OsMed9_2, Med9_2,OsMed14_2, Med14_2,OsMed17_1, Med17_1,OsWD40-173, WD40-173, OsMed4_1, Med4_1 ,OsMed22_2, Med22_2,OsMed26_2, Med26_2,OsMED10, MED10, OsMed10_1, Med10_1 ,OsMed8_1, Med8_1,OsMed37_1, Med37_1 ,OsMED4_2, MED4_2 ,OsMed5_2, Med5_2,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsMed36_2, Med36_2 ,OsMED5_3, MED5_3,PFT1, OsMED25_1, MED25_1 ,OsMED14_1, MED14_1 ,OsMed28_1, Med28_1,OsMed23_1, Med23_1,OsMed3_1, Med3_1,OsMed26_4, Med26_4,OsMED31a, MED31a, OsMed31_1, Med31_1 ,OsMed16_1, Med16_1, OsSFR6, SFR6,OsMED31b, MED31b, OsMed31_2, Med31_2 ,OsMED15_2, OsKIX_10, MED15_2, KIX_10,OsctHSP70-1, ctHSP70-1, OsMed37_6, Med37_6 ,OsMED11_1, MED11_1 ,OsMED19b, MED19b, OsMed19_1 , Med19_1 ,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsMed18_1, Med18_1,HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 ,OsMed34_2, Med34_2,OsPUB53, PUB53, OsRLCK305, OsMed2_1, Med2_1 ,OsMed22_1, Med22_1
42820	26983995	Chen Z.C., Yamaji N., Fujii-Kashino M., Ma J.F.	A Cation-Chloride Cotransporter Gene Is Required for Cell Elongation and Osmoregulation in Rice.	Plant Physiol.	171(1)	494-507	2016	_	Os CCC1, OsCCC1, CCC1, OsLAT9 
42821	27095404	Jing P., Zou J., Kong L., Hu S., Wang B., Yang J., Xie G.	OsCCD1, a novel small calcium-binding protein with one EF-hand motif, positively regulates osmotic and salt tolerance in rice.	Plant Sci.	247	104-14	2016	P5CS,_,APX1	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsCCD1, CCD1 ,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
42822	27007717	Zheng X., Yang S., Zhang D., Zhong Z., Tang X., Deng K., Zhou J., Qi Y., Zhang Y.	Effective screen of CRISPR/Cas9-induced mutants in rice by single-strand conformation polymorphism.	Plant Cell Rep.			2016	ROC5,DEP1	Roc5(t), Roc5, GL2-5, OsROC5,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
42823	26945857	Bruno M., Al-Babili S.	On the substrate specificity of the rice strigolactone biosynthesis enzyme DWARF27.	Planta	243(6)	1429-40	2016	D27	d27(d t), dt, dwf23, d27, OsD27
42824	26956369	Ni J., Yu Z., Du G., Zhang Y., Taylor J.L., Shen C., Xu J., Liu X., Wang Y., Wu Y.	Heterologous Expression and Functional Analysis of Rice GLUTAMATE RECEPTOR-LIKE Family Indicates its Role in Glutamate Triggered Calcium Flux in Rice Roots.	Rice (N Y)	9(1)	9	2016	_,_,_,_,_,_,_,_,_,_,GLR3.1,_,_	OsGLR4.9, GLR4.9, OsGLR1.3, GLR1.3,OsGLR3.6, GLR3.6, OsGLR3.4, GLR3.4,OsGLR1.3, GLR1.3, OsGLR1.1, GLR1.1,OsGLR1.1, GLR1.1, OsGLR1.2, GLR1.2,OsGLR1.2, GLR1.2, OsGLR1.4, GLR1.4,OsGLR3.5, GLR3.5, OsGLR3.3, GLR3.3,OsGLR3.1, GLR3.1, OsGLR3.2, GLR3.2,OsGLR2.1, GLR2.1, OsGLR2.2, GLR2.2,OsGLR2.2, GLR2.2, OsGLR2.1, GLR2.1,OsGLR2.4, GLR2.4,OsGLR3.2, GLR3.2, OsGLR3.1,OsGLR2.3, GLR2.3,OsGLR3.3, GLR3.3, OsGLR3.5, GLR3.5
42825	26994476	Yang X., Gong P., Li K., Huang F., Cheng F., Pan G.	A single cytosine deletion in the OsPLS1 gene encoding vacuolar-type H+-ATPase subunit A1 leads to premature leaf senescence and seed dormancy in rice.	J. Exp. Bot.	67(9)	2761-76	2016	WRKY77,RCCR1,WRKY6,SGR,PAL1,WRKY72,WRKY71,_,PAL,WRKY107,WRKY42,PLS1,WRKY79,_,_,WRKY53,_,PAL1	OsWRKY77, WRKY-77,OsRCCR1, OsRCCR, RCCR,OsWRKY6, WRKY-6,sgr(t), sgr, OsSGR, OsSgr,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsWRKY72, WRKY-72,OsWRKY71, WRKY-71,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsWRKY107,OsWRKY42, WRKY-42,OsVHA-A, VHAA1, VHA-A1, OsPLS1, OsPSL1/VHA-A1,OsWRKY79, WRKY-79,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,VHA-A2, VHAA2,OsWRKY53, WRKY-53,OsI57, I57, OsKAT1, KAT1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1
42826	26831097	Zhao Y., Chan Z., Gao J., Xing L., Cao M., Yu C., Hu Y., You J., Shi H., Zhu Y., Gong Y., Mu Z., Wang H., Deng X., Wang P., Bressan R.A., Zhu J.K.	ABA receptor PYL9 promotes drought resistance and leaf senescence.	Proc. Natl. Acad. Sci. U.S.A.	113(7)	1949-54	2016		
42827	26923852	Hao B., Caulfield J.C., Hamilton M.L., Pickett J.A., Midega C.A., Khan Z.R., Wang J., Hooper A.M.	Biosynthesis of natural and novel C-glycosylflavones utilising recombinant Oryza sativa C-glycosyltransferase (OsCGT) and Desmodium incanum root proteins.	Phytochemistry	125	73-87	2016	_	OsCGT, CGT
42828	26912459	Cheung M.Y., Li X., Miao R., Fong Y.H., Li K.P., Yung Y.L., Yu M.H., Wong K.B., Chen Z., Lam H.M.	ATP binding by the P-loop NTPase OsYchF1 (an unconventional G protein) contributes to biotic but not abiotic stress responses.	Proc. Natl. Acad. Sci. U.S.A.	113(10)	2648-53	2016	_	OsYchF1, YchF1, OsPM8ATP 
42829	26872973	Tsukagoshi Y., Suzuki H., Seki H., Muranaka T., Ohyama K., Fujimoto Y.	Ajuga Delta24-Sterol Reductase Catalyzes the Direct Reductive Conversion of 24-Methylenecholesterol to Campesterol.	J. Biol. Chem.	291(15)	8189-98	2016	BRD2	brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1
42830	26864016	Cho L.H., Yoon J., Pasriga R., An G.	Homodimerization of Ehd1 Is Required to Induce Flowering in Rice.	Plant Physiol.	170(4)	2159-71	2016	RR1,EF1,RFT1,HD3A	rr1, OsRR1, Rra9, OsRRA9,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
42831	26834011	Lu H.P., Pang W.Q., Li W.X., Tan Y.Y., Wang Q., Zhao H.J., Shu Q.Y.	Tissue-specific expression, developmentally and spatially regulated alternative splicing, and protein subcellular localization of OsLpa rice.	J Zhejiang Univ Sci B	17(2)	100-9	2016	LPA1	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3
42832	26872834	Tan J., Jin M., Wang J., Wu F., Sheng P., Cheng Z., Wang J., Zheng X., Chen L., Wang M., Zhu S., Guo X., Zhang X., Liu X., Wang C., Wang H., Wu C., Wan J.	OsCOL10, a CONSTANS-like Gene, Functions as a flowering time Repressor Downstream of Ghd7 in Rice.	Plant Cell Physiol.	57(4)	798-812	2016	_,RFT1,EF1,GHD7,HD3A	OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
42833	26841113	Sato H., Todaka D., Kudo M., Mizoi J., Kidokoro S., Zhao Y., Shinozaki K., Yamaguchi-Shinozaki K.	The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.	Plant Biotechnol. J.			2016	ERF42,HSP17.9A,DPB3-2,HSFA3,HSP17.3,HSFA2A	OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,Oshsp17.9A, OsHsp17.9A, OsHSP17.9A-CI, Oshsp17.9,OsDPB3-2,HSfA3, OsHsfA3, OsHsf-07, HSF07,OsHsp17.3, OsHSP17.3, Oshsp17.3 ,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e 
42834	26879413	Sugano S., Hayashi N., Kawagoe Y., Mochizuki S., Inoue H., Mori M., Nishizawa Y., Jiang C.J., Matsui M., Takatsuji H.	Rice OsVAMP714, a membrane-trafficking protein localized to the chloroplast and vacuolar membrane, is involved in resistance to rice blast disease.	Plant Mol. Biol.	91(1-2)	81-95	2016	VAMP7111,VAMP714,VAMP71112	OsVAMP7111,OsVAMP714,OsVAMP7112
42835	26938582	Aznar-Moreno JA., Venegas-Caler?n M., Du Z.Y., Garc?s R., Tanner J.A., Chye M.L., Mart?nez-Force E., Salas J.J.	Characterization of a small acyl-CoA-binding protein (ACBP) from Helianthus annuus L. and its binding affinities.	Plant Physiol. Biochem.	102	141-50	2016		
42836	26869604	Fred A.K., Kiswara G., Yi G., Kim K.M.	Screening rice cultivars for resistance to bacterial leaf blight.	J. Microbiol. Biotechnol.			2016	PR10B	RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b 
42837	26732823	Cordeiro A.M., Figueiredo D.D., Tepperman J., Borba A.R., Louren?o T., Abreu I.A., Ouwerkerk P.B., Quail P.H., Margarida Oliveira M., Saibo N.J.	Rice Phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of Phytochrome B.	Biochim. Biophys. Acta	1859(2)	393-404	2016	PHYB,DREB1B,PIL14	phyB, PHYB1, OsPHYB, OsphyB,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsPIL14, OsbHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta
42838	26771167	Yoshitomi K., Taniguchi S., Tanaka K., Uji Y., Akimitsu K., Gomi K.	Rice terpene synthase 24 (OsTPS24) encodes a jasmonate-responsive monoterpene synthase that produces an antibacterial gamma-terpinene against rice pathogen.	J. Plant Physiol.	191	120-6	2016	_	OsTPS24, TPS24
42839	27095397	Bai B., Zhao J., Li Y., Zhang F., Zhou J., Chen F., Xie X.	OsBBX14 delays heading date by repressing florigen gene expression under long and short-day conditions in rice.	Plant Sci.	247	25-34	2016	HD3A,CCA1,EF1,SE1,TOC1,RFT1,_	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsBBX14, BBX14, OsDBB3b, DBB3b
42840	26833031	Pittman J.K., Hirschi K.D.	Phylogenetic analysis and protein structure modelling identifies distinct Ca(2+)/Cation antiporters and conservation of gene family structure within Arabidopsis and rice species.	Rice (N Y)	9(1)	3	2016	_,CCX4,CAX8,CDT1,CAX1B,_,CAX1A,CAX3,_,CAX1C,_,CCX1,CCX3,_,CAX2	CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3,OsCCX4, OsNCX15, NCX15,OsCAX8, OsNCX13, NCX13, OsNaCa11exB, OsCCX5, CCX5,OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8,OsCAX1b, CAX1b, CAX3, OsNCX10, NCX10,OsMHX1, MHX1, OsMHX2, MHX2,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsCAX3, CAX6, OsNCX9, OsNCX9.1, OsNCX9.2, NCX9,OsEFCAX1, OsNCX1, OsNCX1.1, OsNCX1.2, NCX1, OsNCL1, NCL1,OsCAX1c, CAX1c, CAX4, OsNCX5, OsNCX5.1, OsNCX5.2, NCX5,OsMHX, OsMHX2, MHX2, OsNCX14, OsNCX14.1, OsNCX14.2, NCX14, OsMHX1, MHX1,OsCCX1, OsNCX6, NCX6,OsCCX3, OsNCX11, NCX11,OsEFCAX2, OsNCX4, OsNCX4.1, OsNCX4.2, NCX4, OsNCL2, NCL2,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2
42841	26869703	Srivastava A.K., Zhang C., Yates G., Bailey M., Brown A., Sadanandom A.	SUMO Is a Critical Regulator of Salt Stress Responses in Rice.	Plant Physiol.	170(4)	2378-91	2016	OTS1,ELS1,OTS3,_,SPF1,ELS2,DRO1,RSS3,RSS1,OTS2,SODCC1,_,_,FUG1,_,_,_,_,_,IAA23	OsOTS1,OsELS1,OsOTS3,prx60, POX-1,OsSPF1, OsSPF1.1, OsSPF1.2,OsELS2,Dro1,,,OsOTS2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,prx109, POX-2,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn,OsFUG1,,,,,,OsIAA23
42842	26918637	Yang J., Gao M.X., Hu H., Ding X.M., Lin H.W., Wang L., Xu J.M., Mao C.Z., Zhao F.J., Wu Z.C.	Osclt1, a CRT-like transporter 1, is required for glutathione homeostasis and arsenic tolerance in rice.	New Phytol.			2016	_,_,PHF1	OsCLT2, CLT2,OsCLT1, CLT1,OsPHF1, OsWD40-137, OsSEC12
42843	26920613	Guan Q.J., Ma H.Y., Wang Z.J., Wang Z.Y., Bu Q.Y., Liu S.K.	A rice LSD1-like-type ZFP gene OsLOL5 enhances saline-alkaline tolerance in transgenic Arabidopsis thaliana, yeast and rice.	BMC Genomics	17(1)	142	2016	_,SOD4,LOL2,_,APX2	OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3,OsLOL2, OsLSD5, OsLOL5, LOL5,OsCatC, CatC, OsCAT,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1
42844	26839129	Wang Y., Wang C., Zheng M., Lyu J., Xu Y., Li X., Niu M., Long W., Wang D., Wang H., Terzaghi W., Wang Y., Wan J.	WHITE PANICLE1, a Val-tRNA synthetase Regulating Chloroplast Ribosome Biogenesis in Rice, Is Essential for Early Chloroplast Development.	Plant Physiol.	170(4)	2110-23	2016	RBCL,VALRS3,RPOA,WP1,VALRS1,PSAA,PSAB	rbcL, rbcA, OsrbcL,OsValRS3, ValRS3,rope, rpoalpha, Rpoalpha, rope, RpoA ,OsValRS2, ValRS2,OsValRS1, ValRS1,PsaA, psaA, PsAA1,PsaB, psaB, PsAA2
42845	26874295	Nguyen H.P., Jeong H.Y., Kim H., Kim Y.C., Lee C.	Molecular and biochemical characterization of rice pectin methylesterase inhibitors (OsPMEIs).	Plant Physiol. Biochem.	101	105-12	2016		
42846	26902738	Mosa K.A., Kumar K., Chhikara S., Musante C., White J.C., Dhankher O.P.	Enhanced Boron Tolerance in Plants Mediated by Bidirectional Transport Through Plasma Membrane Intrinsic Proteins.	Sci Rep	6	21640	2016	PIP2;6,PIP1;3	OsPIP2;6, PIP2-6, OsPIP2-5,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
42847	27200061	Chai C., Subudhi P.K.	Comprehensive Analysis and Expression Profiling of the OsLAX and OsABCB Auxin Transporter Gene Families in Rice (Oryza sativa) under Phytohormone Stimuli and Abiotic Stresses.	Front Plant Sci	7	593	2016	MDR13,ABCB13,_,MDR9,ABCB10,MDR10,ABCB19,MDR15,MDR14,ABCB9,_,_,MDR7,MDR5,_,MDR3,ABCB18,MDR17,MDR8,MDR11,_,MDR12,MDR16,MDR1,ABCB12,MDR4,MDR6	OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsABCB13, OsPGP13,OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3,OsABCB4, ABCB4, OsPGP4, OsMDR9, OsISC30,OsABCB10, OsPGP10,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsABCB19, OsPGP19,OsABCB20, ABCB20, OsPGP20, OsMDR15,OsABCB22, ABCB22, OsPGP22, OsMDR14,OsABCB9, OsPGP9, OsISC33,OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4,OsLAX5, OsAUX5, LAX5, AUX5,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11,OsABCB3, ABCB3, OsPGP3, OsMDR5, OsISC34,OsLAX2, OsRAU2, OsAUX3, LAX2, RAU2, AUX3 ,OsABCB17, ABCB17, OsPGP17, OsMDR3, OsABCB17_1,OsABCB18, OsPGP18, OsABCB18_1, OsABCB18_2,OsABCB7, ABCB7, OsPGP7, OsMDR17,OsABCB6, ABCB6, OsPGP6, OsMDR8, OsISC31,OsABCB11, ABCB11, OsPGP11, OsMDR11, OsABCB11_1, OsABCB11_2,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsABCB21, ABCB21, OsPGP21, OsMDR16,OsABCB15, ABCB15, OsPGP15, OsMDR1, OsMDR2, MDR2, OsSTA125,OsABCB12, OsPGP12, PGP12,OsABCB1, ABCB1, OsPGP1, OsMDR4,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2
42848	26754793	Hwang Y.H., Kim S.K., Lee K.C., Chung Y.S., Lee J.H., Kim J.K.	Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.	Plant Cell Rep.	35(4)	857-65	2016	HAP3I,HD5,HAP5E,HAP5C,HAP3F,HAP5A,HAP5D,HAP5B	OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3
42849	26810875	Wu Y.S., Yang C.Y.	Physiological Responses and Expression Profile of NADPH Oxidase in Rice (Oryza Sativa) Seedlings under Different Levels of Submergence.	Rice (N Y)	9(1)	2	2016	RBOHA,RBOHI,RBOHG,RBOHC,RBOHD,RBOHB,RBOHE,RBOHF,RCCR1,_,RBOHH,SGR	rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2,OsrbohI, Os rbohI, rbohI, OsRbohI, OsRbohF,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,rbohD, OsrbohD, Os rbohD, OsRbohD, OsNox4,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE,OsRCCR1, OsRCCR, RCCR,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,rbohH, OsrbohH, Os rbohH, OsNox9, OsRboh9, Os-RbohH, RbohH ,sgr(t), sgr, OsSGR, OsSgr
42850	26775680	Do H., Kim I.S., Jeon B.W., Lee C.W., Park A.K., Wi A.R., Shin S.C., Park H., Kim Y.S., Yoon H.S., Kim H.W., Lee J.H.	Structural understanding of the recycling of oxidized ascorbate by dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica.	Sci Rep	6	19498	2016	DHAR1	OsDHAR1, DHAR, cytDHAR, OsDHAR
42851	27064905	Sreedhar R., Kaul Tiku P.	Cupincin: A Unique Protease Purified from Rice (Oryza sativa L.) Bran Is a New Member of the Cupin Superfamily.	PLoS ONE	11(4)	e0152819	2016	_,_	,OsEnS-57, EnS-57, CDP3.1 
42852	26959651	Dey A., Samanta M.K., Gayen S., Sen S.K., Maiti M.K.	Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines drought tolerance and Yield Improvement in Rice Genotypes.	PLoS ONE	11(3)	e0150763	2016	LEA3-1,RAB16A,RAB16B,BZIP23	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA28, OsRAB16D, OsRAB16b,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
42853	26744119	Bai X., Huang Y., Mao D., Wen M., Zhang L., Xing Y.	Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.	Sci Rep	6	19022	2016	FZP,MADS17,LHS1,MFO1,RFL,MADS58,MADS7	fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,OsMADS17, NMADS3, RMADS213, nmads3,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsMADS6, MADS6, OsMFO1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,OsMADS58,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45
42854	26826052	Chen J., Zhang Y., Tan Y., Zhang M., Zhu L., Xu G., Fan X.	Agronomic nitrogen-use efficiency of rice can be increased by driving OsNRT2.1 expression with the OsNAR2.1 promoter.	Plant Biotechnol. J.			2016	NRT2.1,NAR2.1	OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A
42855	26795142	Jeong H.J., Yang J., Cho L.H., An G.	OsVIL1 controls flowering time in rice by suppressing OsLF under short days and by inducing Ghd7 under long days.	Plant Cell Rep.	35(4)	905-20	2016	EF1,RFT1,GHD7,_,LC2,HD3A,EMF2B,_	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsLF, LF, OsbHLH119,OsLC2, OsVIL2, VIL2, OsVIL3,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsEMF2b, EMF2b,OsVIL1, VIL1, OsVIL2
42856	26758286	Zheng K., Tian H., Hu Q., Guo H., Yang L., Cai L., Wang X., Liu B., Wang S.	Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.	Sci Rep	6	19254	2016	_,TCL1,_,ROC9,_,RC,TCL2,_,_,_,RA	R2R3-MYB, OsGL1A, GL1A,OsTCL1,OsbHLH015, OsGL3B, GL3B,Roc9(t), Roc9, GL2-9, OsGL2, GL2,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,OsTCL2,OsWD40-50, OsTTG1A, TTG1A, OsTTG1, TTG1 ,OsTTG1B, TTG1B,OsGL1B, GL1B,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2
42857	27055010	Ma J., Cheng Z., Chen J., Shen J., Zhang B., Ren Y., Ding Y., Zhou Y., Zhang H., Zhou K., Wang J.L., Lei C., Zhang X., Guo X., Gao H., Bao Y., Wan J.M.	Phosphatidylserine Synthase Controls Cell Elongation Especially in the Uppermost Internode in Rice by Regulation of Exocytosis.	PLoS ONE	11(4)	e0153119	2016	SUI1,BC7,SUI3,SUI2	OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsSUI3,OsSUI2
42858	26973672	Sui Z., Wang T., Li H., Zhang M., Li Y., Xu R., Xing G., Ni Z., Xin M.	Overexpression of Peptide-Encoding OsCEP6.1 Results in Pleiotropic Effects on Growth in Rice (O. sativa).	Front Plant Sci	7	228	2016	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsCEP6, CEP6, OsCEP6.1, CEP6.1,OsCEP13, CEP13,OsCEP9, CEP9,OsCEP6, CEP6,OsCEP15, CEP15,OsCEP14, CEP14,OsCEP10, CEP10,OsCEP1, CEP1,OsCEP12, CEP12,OsCEP3, CEP3,OsCEP2, CEP2, OsCEP4, CEP4,OsCEP11, CEP11,OsCEP7, CEP7, OsCEP7.1, CEP7.1,OsCEP7, CEP7, OsCEP8, CEP8,OsCEP5, CEP5
42859	27148296	Li S., Yue W., Wang M., Qiu W., Zhou L., Shou H.	Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.	Front Plant Sci	7	465	2016	RAB16A,ERF3,HD3A,RFT1,LEA3-1,GI,DREB1E,DHN1,ERF91,SALT	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsGI, Gi, Os-GI,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
42860	27200067	Qin C., Cheng L., Zhang H., He M., Shen J., Zhang Y., Wu P.	OsGatB, the Subunit of tRNA-Dependent Amidotransferase, Is Required for Primary Root Development in Rice.	Front Plant Sci	7	599	2016	GATB	OsGatB, GatB
42861	26870074	Sharma S., Kaur C., Singla-Pareek SL., Sopory S.K.	OsSRO1a Interacts with RNA Binding Domain-Containing Protein (OsRBD1) and Functions in Abiotic Stress Tolerance in Yeast.	Front Plant Sci	7	62	2016	_,_,_,_,_,TWI1	OsRBD1, RBD1,OsSRO1e, SRO1e,OsSRO1d, SRO1d,OsSRO1b, SRO1b,OsSRO1c, SRO1c,OsSRO1a, SRO1a, OsTWI1
42862	27200010	Li Q., Deng Z., Gong C., Wang T.	The Rice Eukaryotic Translation Initiation Factor 3 Subunit f (OseIF3f) Is Involved in Microgametogenesis.	Front Plant Sci	7	532	2016	EIF3D,EIF3A,EIF3B,EIF3F,_,EIF3M,EIF3L,_,_,EIF3G,EIF3E,EIF3H,EIF3K,_	eIF-3d, OseIF3d,eIF-3a, OseIF3a,eIF-3b, OseIF3b,eIF-3f, OseIF3f,OsWD40-159, Cen8.t00757, OseIF3i, eIF3i, EIF3I,eIF-3m, OseIF3m,eIF-3l, OseIF3l,eIF-3c, OseIF3c, EIF3C,OsWD40-116, OseIF3i, eIF3i, EIF3I,eIF-3g, OseIF3g, RBP-43 ,eIF-3e, OseIF3e,eIF-3h, OseIF3h,eIF-3k, OseIF3k,eIF-3c, OseIF3c, EIF3C
42863	26834774	Hong Y., Zhang H., Huang L., Li D., Song F.	Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and salt tolerance in Rice.	Front Plant Sci	7	4	2016	_,_,_,P5CS,LEA3-1,BZIP23,NAC22,ERF3,NCED1,NCED2,NCED1,RAB16A,NCED3,PP2C1,DREB2A	OsMYB2, MYB2,OsPP2C49, PP2C49, OsPP76,OsPSY, PSY, OsPSY3, PSY3,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,ONAC022, ONAC22,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OSNCED2, OsNCED2, OsNCED5, NCED5,OsNCED1, OsCCD4a, CCD4a,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167
42864	26748915	Hwang S.K., Singh S., Cakir B., Satoh H., Okita T.W.	The plastidial Starch phosphorylase from rice endosperm: catalytic properties at low temperature.	Planta	243(4)	999-1009	2016	_,_	Pho2, OsPho2,Pho1, OsPho1, OsPHOL, PHOL
42865	26747563	Huo C., Zhang B., Wang H., Wang F., Liu M., Gao Y., Zhang W., Deng Z., Sun D., Tang W.	Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dalpha1 in Mediating Cold Acclimation Signaling Pathway in Rice.	Mol. Cell Proteomics	15(4)	1397-411	2016	DREB1A,PLDalpha1,SIZ1	OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,RPLD1, PLD1, OsPLDalpha1,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 
42866	26812961	Sakamoto S., Takata N., Oshima Y., Yoshida K., Taniguchi T., Mitsuda N.	Wood reinforcement of poplar by rice NAC transcription factor.	Sci Rep	6	19925	2016	_	ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1
42867	26798026	Li Q., Yan W., Chen H., Tan C., Han Z., Yao W., Li G., Yuan M., Xing Y.	Duplication of OsHAP family genes and their association with heading date in rice.	J. Exp. Bot.	67(6)	1759-68	2016	HAP5I,HAP2H,HAP3D,HAP2A,HD5,HAP2E,HAP3E,HAP2B,HAP2J,HAP2D,HAP5H,HAP3C,HAP3B,HAP3F,HAP2I,HAP5F,HAP3L,HAP5G,HAP5K,HAP3G,HAP3A,HAP2C,HAP3J,HAP5D,HAP3I,HAP5C,HAP5B,HAP5J,HAP2K,HAP2F,HAP2G,HAP5A,HAP3K,HAP5E,HAP5L	OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9,OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,OsHAP3L,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsHAP5J, OsNF-YC8, NF-YC8, NFYC8,OsHAP2K, NF-YA11, OsNF-YA11, NFYA11,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11
42868	27066017	Zhang M., Deng X., Yin L., Qi L., Wang X., Wang S., Li H.	Regulation of Galactolipid Biosynthesis by Overexpression of the Rice MGD Gene Contributes to Enhanced Aluminum Tolerance in Tobacco.	Front Plant Sci	7	337	2016	_	OsMGD, MGD
42869	26732528	Ghosh A., Kushwaha H.R., Hasan M.R., Pareek A., Sopory S.K., Singla-Pareek SL.	Presence of unique glyoxalase III proteins in plants indicates the existence of shorter route for methylglyoxal detoxification.	Sci Rep	6	18358	2016	_,_,_,_,_,_	OsDJ-1E, DJ-1E,OsDJ-1F, DJ-1F,OsDJ-1C, DJ-1C, OsDJ-1C.1, OsDJ-1C.2, OsDJ-1C.3,OsDJ-1B, DJ-1B,OsDJ-1D, DJ-1D, OsDJ-1D.1, OsDJ-1D.2, OsDJ-1D.3, OsDJ-1D.4, OsDJ-1D.5,OsDJ-1A, DJ-1A
42870	26901100	Fang H., Meng Q., Zhang H., Huang J.	Knock-down of a RING finger gene confers cold tolerance.	Bioengineered	7(1)	39-45	2016	_	OsSRFP1, SRFP1
42871	26795719	Harkenrider M., Sharma R., De Vleesschauwer D., Tsao L., Zhang X., Chern M., Canlas P., Zuo S., Ronald P.C.	Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens.	PLoS ONE	11(1)	e0147310	2016	XB15,NH1,WAK25	XB15, OsPP2C35, PP2C35, OsPP59, SIP35 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsWAK25
42872	27092147	Saenchai C., Bouain N., Kisko M., Prom-U-Thai C., Doumas P., Rouached H.	The Involvement of OsPHO1;1 in the Regulation of Iron Transport Through Integration of Phosphate and Zinc Deficiency Signaling.	Front Plant Sci	7	396	2016	PHO1;1	OsPHO1;1
42873	26788958	Hwang S.G., Park H.M., Han A.R., Jang C.S.	Molecular characterization of Oryza sativa arsenic-induced RING E3 ligase 1 (OsAIR1): Expression patterns, localization, functional interaction, and heterogeneous overexpression.	J. Plant Physiol.	191	140-8	2016	_,_,_,PPS,C3H41,_,HIRP1	OsAIR1, AIR1,OsRFP ,OsRFP ,OsWD40-55, OsCOP1, COP1,OsC3H41, MKRN,OsRFP ,OsRFP, OsHIRP1
42874	26804776	Kabir A.H.	Biochemical and molecular changes in rice seedlings (Oryza sativa L.) to cope with chromium stress.	Plant Biol (Stuttg)			2016	IRT1,_	OsIRT1,OsFRO7, FRO7, OsFRO1 ,FRO1
42875	26754668	Cakir B., Shiraishi S., Tuncel A., Matsusaka H., Satoh R., Singh S., Crofts N., Hosaka Y., Fujita N., Hwang S.K., Satoh H., Okita T.W.	Analysis of the Rice ADP-Glucose Transporter (OsBt1) Indicates the Presence of Regulatory Processes in the Amyloplast Stroma That Control ADP-Glucose Flux into Starch.	Plant Physiol.	170(3)	1271-83	2016	BT1-1	OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2
42876	26767749	Cho S.H., Kang K., Lee S.H., Lee I.J., Paek N.C.	OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa).	J. Exp. Bot.	67(6)	1677-87	2016	KAO,NAL3,NAL2	OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS
42877	26786707	Suzuki K., Yamaji N., Costa A., Okuma E., Kobayashi N.I., Kashiwagi T., Katsuhara M., Wang C., Tanoi K., Murata Y., Schroeder J.I., Ma J.F., Horie T.	OsHKT1;4-mediated Na(+) transport in stems contributes to Na(+) exclusion from leaf blades of rice at the reproductive growth stage upon salt stress.	BMC Plant Biol.	16	22	2016	HKT7	OsHKT7, OsHKT1;4, HKT1;4
42878	26973678	Ding Y., Ye Y., Jiang Z., Wang Y., Zhu C.	MicroRNA390 Is Involved in Cadmium Tolerance and Accumulation in Rice.	Front Plant Sci	7	235	2016	MIR390,NRAMP5,HMA2,_	OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,OsNRAMP5, OsNramp5,OsHMA2, osHMA2, OsHMA2v ,OsSRK, SRK
42879	27096703	Chen B., Wang Y.	Proteomic and Physiological Studies Provide Insight into Photosynthetic Response of Rice (Oryza sativa L.) Seedlings to Microgravity.	Photochem. Photobiol.			2016		
42880	27053722	Bailey K.J., Leegood R.C.	Nitrogen recycling from the xylem in rice leaves: dependence upon metabolism and associated changes in xylem hydraulics.	J. Exp. Bot.	67(9)	2901-11	2016		
42881	27043481	Kimball B.A.	Crop responses to elevated CO2 and interactions with H2O, N, and temperature.	Curr. Opin. Plant Biol.	31	36-43	2016		
42882	27076183	Chandran A.K., Lee G.S., Yoo Y.H., Yoon U.H., Ahn B.O., Yun D.W., Kim J.H., Choi H.K., An G., Kim T.H., Jung K.H.	Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by DXR mutant having defects in light response.	Rice (N Y)	9(1)	17	2016		
42883	27026054	Jiang S.Y., Ramachandran S.	Expansion Mechanisms and Evolutionary History on Genes Encoding DNA Glycosylases and Their Involvement in Stress and Hormone Signaling.	Genome Biol Evol	8(4)	1165-84	2016		
42884	25641865	Liu S.M., Li J., Zhu J.Q., Wang X.W., Wang C.S., Liu S.S., Chen X.X., Li S.	Transgenic plants expressing the AaIT/GNA fusion protein show increased resistance and toxicity to both chewing and sucking pests.	Insect Science	23(2)	265-76	2016		
42885	27111722	Steuernagel B., Periyannan S.K., Hern?ndez-Pinz?n I., Witek K., Rouse M.N., Yu G., Hatta A., Ayliffe M., Bariana H., Jones J.D., Lagudah E.S., Wulff B.B.	Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture.	Nat. Biotechnol.			2016		
42886	27110682	Zhao H., Frank T., Tan Y., Zhou C., Jabnoune M., Arpat A.B., Cui H., Huang J., He Z., Poirier Y., Engel K.H., Shu Q.	Disruption of OsSULTR3;3 reduces phytate and phosphorus concentrations and alters the metabolite profile in rice grains.	New Phytol.			2016	_,ITPK4,_,ITPK6,_,_,IPS1,PAP10A,_,_,_,PT8,_,_,ITPK3,_,ITPK1,LPA	OsAPRL3,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsATPS, ATPS, OsaATPS, PAPSS,OsITPK6, OsITP5/6K-6, ITP5/6K-6,OsSAT, SAT,OsIPK1, IPK1,OsIPS1, IPS1,OsPAP10a, PAP10,OsAPRL5,OsAPRL1,OsSAT, SAT,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsSPX1, SPX1,LDC, PAP15, OsPAP15 ,OsITPK3, OsITP5/6K-3, ITP5/6K-3, OsIPK1,OsSPX2, SPX2,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,OsSultr3;3, OsSul3;3, SULTR3;3 
42887	27110776	Zong J.M., Li X.W., Zhou Y.H., Wang F.W., Wang N., Dong Y.Y., Yuan Y.X., Chen H., Liu X.M., Yao N., Li H.Y.	The AaDREB1 Transcription Factor from the Cold-Tolerant Plant Adonis amurensis Enhances Abiotic Stress Tolerance in Transgenic Plant.	Int J Mol Sci	17(4)		2016		
42888	27122572	Farooq M.A., Detterbeck A., Clemens S., Dietz K.J.	Silicon-induced reversibility of cadmium toxicity in rice.	J. Exp. Bot.			2016		
42889	27084974	Fan S., Tian F., Li J., Hutchins W., Chen H., Yang F., Yuan X., Cui Z., Yang C.H., He C.	Identification of phenolic compounds that suppress the virulence of Xanthomonas oryzae on rice via the type III secretion system.	Mol. Plant Pathol.			2016		
42890	27208287	Zhang Z., Tan J., Shi Z., Xie Q., Xing Y., Liu C., Chen Q., Zhu H., Wang J., Zhang J., Zhang G.	albino leaf 1 that Encodes the sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development in Rice.	Plant Physiol.			2016	RBCL,PSAE,YGL10,PSAD,_,PSBP,PSBO,PSAA,_,AL1 ,PSAB,RPOB,PSBA	rbcL, rbcA, OsrbcL,PsaE, OsPsaE,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,PsaD, OsPsaD,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,PsbP, OsPsbP, psbP,PsbO, psbO,PsaA, psaA, PsAA1,RbcS3, OsRBCS3, OsRbcS3, rbcS ,AL1a, AL1b, AL1c ,PsaB, psaB, PsAA2,rpoB, RpoB, Rpobeta,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1
42891	27109389	Manna M., Achary V.M., Islam T., Agrawal P.K., Reddy M.K.	The development of a phosphite-mediated fertilization and weed control system for rice.	Sci Rep	6	24941	2016		
42892	27094318	Wu M., Li Y., Chen D., Liu H., Zhu D., Xiang Y.	Genome-wide identification and expression analysis of the IQD gene family in moso bamboo (Phyllostachys edulis).	Sci Rep	6	24520	2016		
42893	26991395	Huang S., Antony G., Li T., Liu B., Obasa K., Yang B., White F.F.	The broadly effective recessive resistance gene xa5 of rice is a virulence effector-dependent quantitative trait for bacterial blight.	Plant J.	86(2)	186-94	2016		
42894	27039184	Lee Y.S., Yi J., An G.	OsPhyA modulates rice flowering time mainly through OsGI under short days and Ghd7 under long days in the absence of phytochrome B.	Plant Mol. Biol.			2016		
42895	27077850	Li X., Shahid M.Q., Wu J., Wang L., Liu X., Lu Y.	Comparative Small RNA Analysis of pollen Development in Autotetraploid and Diploid Rice.	Int J Mol Sci	17(4)		2016		
42896	27106031	Gan L., Wang X., Cheng Z., Liu L., Wang J., Zhang Z., Ren Y., Lei C., Zhao Z., Zhu S., Lin Q., Wu F., Guo X., Wang J., Zhang X., Wan J.	Wax crystal-sparse leaf 3 encoding a beta-ketoacyl-CoA reductase is involved in cuticular wax biosynthesis in rice.	Plant Cell Rep.			2016		
42897	27061745	Cosme M., Lu J., Erb M., Stout M.J., Franken P., Wurst S.	A fungal endophyte helps plants to tolerate root herbivory through changes in gibberellin and jasmonate signaling.	New Phytol.			2016		
42898	26956504	Dreni L., Zhang D.	Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.	J. Exp. Bot.	67(6)	1625-38	2016		
42899	27126603	Wang Y., Ji K., Shen S., Chen H.	Probing molecular events associated with early development of thylakoid membranes by comparative proteomics and low temperature fluorescence.	J Proteomics			2016		
42900	27118394	Zhang F., Xu T., Mao L., Yan S., Chen X., Wu Z., Chen R., Luo X., Xie J., Gao S.	Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication.	BMC Plant Biol.	16(1)	103	2016		
42901	26882848	Chen Y.C., Lai M.H., Wu C.Y., Lin T.C., Cheng A.H., Yang C.C., Wu H.Y., Chu S.C., Kuo C.C., Wu Y.F., Lin G.C., Tseng M.N., Tsai Y.C., Lin C.C., Chen C.Y., Huang J.W., Lin H.A., Chung C.L.	The Genetic Structure, Virulence, and Fungicide Sensitivity of Fusarium fujikuroi in Taiwan.	Phytopathology	106(6)	624-35	2016		
42902	27172200	Tong J., Han Z., Han A., Liu X., Zhang S., Fu B., Hu J., Su J., Li S., Wang S., Zhu Y.	Sdt97, a Point Mutation in 5' Untranslated Region, Confers Semi-dwarfism in Rice.	G3 (Bethesda)			2016	_	Sdt97 
42903	27111837	Galbiati F., Chiozzotto R., Locatelli F., Spada A., Genga A., Fornara F.	Hd3a, RFT1 and Ehd1 integrate photoperiodic and drought stress signals to delay the floral transition in rice.	Plant Cell Environ.			2016		
42904	27040682	Yu Y., Yang D., Zhou S., Gu J., Wang F., Dong J., Huang R.	The ethylene response factor OsERF109 negatively affects ethylene biosynthesis and drought tolerance in rice.	Protoplasma			2016		
42905	27050503	Jung J.W., Kim N.S., Jang S.H., Shin Y.J., Yang M.S.	Production and characterization of recombinant human acid alpha-glucosidase in transgenic rice cell suspension culture.	J. Biotechnol.	226	44-53	2016		
42906	27048369	Toda Y., Wang Y., Takahashi A., Kawai Y., Tada Y., Yamaji N., Ma J.F., Ashikari M., Kinoshita T.	Oryza sativa H+-ATPase (OSA) is involved in the regulation of dumbbell-shaped guard cells of rice.	Plant Cell Physiol.			2016		
42907	26979939	Yamamoto K., Sakamoto H., Momonoki Y.S.	Altered expression of acetylcholinesterase gene in rice results in enhancement or suppression of shoot gravitropism.	Plant Signal Behav	11(4)	e1163464	2016	GELP92	OsGELP92, OsGELP92a, OsGELP92b, OsGELP92c, AChE
42908	27040147	Kudo T., Sasaki Y., Terashima S., Matsuda-Imai N., Takano T., Saito M., Kanno M., Ozaki S., Suwabe K., Suzuki G., Watanabe M., Matsuoka M., Takayama S., Yano K.	Identification of reference genes for quantitative expression analysis using large-scale RNA-seq data of Arabidopsis thaliana and model crop plants.	Genes Genet. Syst.			2016		
42909	27108120	Mehra P., Giri J.	Rice and chickpea GDPDs are preferentially influenced by low phosphate and CaGDPD1 encodes an active glycerophosphodiester phosphodiesterase enzyme.	Plant Cell Rep.			2016		
42910	27055266	Wang P., Vlad D., Langdale J.A.	Finding the genes to build C4 rice.	Curr. Opin. Plant Biol.	31	44-50	2016		
42911	27102613	Sun L., Yu Y., Hu W., Min Q., Kang H., Li Y., Hong Y., Wang X., Hong Y.	Ribosomal protein S6 kinase1 coordinates with TOR-Raptor2 to regulate thylakoid membrane biosynthesis in rice.	Biochim. Biophys. Acta	1861(7)	639-49	2016		
42912	27111707	Kaur G., Pati P.K.	Analysis of cis-acting regulatory elements of Respiratory burst oxidase homolog (Rboh) gene families in Arabidopsis and rice provides clues for their diverse functions.	Comput Biol Chem	62	104-118	2016		
42913	27031005	Hu L., Ye M., Li R., Lou Y.	OsWRKY53, a versatile switch in regulating herbivore-induced defense responses in rice.	Plant Signal Behav	11(4)	e1169357	2016		
42914	27105887	Flematti G.R., Scaffidi A., Waters M.T., Smith S.M.	Stereospecificity in strigolactone biosynthesis and perception.	Planta	243(6)	1361-73	2016		
42915	27090184	Sohn S.I., Oh Y.J., Kim B.Y., Cho H.S.	Effect of CaMSRB2-Expressing Transgenic Rice Cultivation on Soil Microbial Communities.	J. Microbiol. Biotechnol.			2016		
42916	26818077	Fu Y.B., Peterson G.W., Dong Y.	Increasing Genome Sampling and Improving SNP Genotyping for Genotyping-by-Sequencing with New Combinations of Restriction Enzymes.	G3 (Bethesda)	6(4)	845-56	2016		
42917	27208223	Zhu C.Q., Zhu X.F., Hu A.Y., Wang C., Wang B., Dong X.Y., Shen R.F.	Differential effects of nitrogen forms on cell wall phosphorus remobilization in rice (Oryza sativa) are mediated by nitric oxide, pectin content and the expression of the phosphate transporter OsPT2.	Plant Physiol.			2016		
42918	27063367	Rahman M.A., Thomson M.J., Shah-E-Alam M., de Ocampo M., Egdane J., Ismail A.M.	Exploring novel genetic sources of salinity tolerance in rice through molecular and physiological characterization.	Ann. Bot.	117(6)	1083-97	2016		
42919	27101874	Vigueira C.C., Small L.L., Olsen K.M.	Long-term balancing selection at the Phosphorus Starvation Tolerance 1 (PSTOL1) locus in wild, domesticated and weedy rice (Oryza).	BMC Plant Biol.	16(1)	101	2016		
42920	27129984	Galli M., Gallavotti A.	Expanding the Regulatory Network for Meristem Size in Plants.	Trends Genet.	32(6)	372-83	2016		
42921	27038090	Yan J., Wang P., Wang P., Yang M., Lian X., Tang Z., Huang C.F., Salt D.E., Zhao F.J.	A loss-of-function allele of OsHMA3 associated with high cadmium accumulation in shoots and grain of Japonica rice cultivars.	Plant Cell Environ.			2016		
42922	27173278	Zhao C.F., Chen T., Zhao Q.Y., Zhou L.H., Zhao L., Zhang Y.D., Zhu Z., Yao S., Wang C.L.	Analysis of QTLs for panicle exsertion and its relationship with yield and yield-related traits in rice (Oryza sativa L.).	Genet. Mol. Res.	15(2)		2016		
42923	26956501	Tadege M.	WOX3 in the scene: intimacy with hormones.	J. Exp. Bot.	67(6)	1605-7	2016		
42924	26853099	Cayrol B., Delteil A., Gobbato E., Kroj T., Morel J.B.	Three wall-associated kinases required for rice basal immunity form protein complexes in the plasma membrane.	Plant Signal Behav	11(4)	e1149676	2016		
42925	27072282	Rathore M., Singh R., Kumar B., Chauhan B.S.	Characterization of functional trait diversity among Indian cultivated and weedy rice populations.	Sci Rep	6	24176	2016		
42926	27068924	Fontanili L., Lancilli C., Suzui N., Dendena B., Yin Y.G., Ferri A., Ishii S., Kawachi N., Lucchini G., Fujimaki S., Sacchi G.A., Nocito F.F.	Kinetic Analysis of Zinc/Cadmium Reciprocal Competitions Suggests a Possible Zn-Insensitive Pathway for Root-to-Shoot Cadmium Translocation in Rice.	Rice (N Y)	9(1)	16	2016		
42927	26969743	Ahmad I., Mian A., Maathuis F.J.	Overexpression of the rice AKT1 potassium channel affects potassium nutrition and rice drought tolerance.	J. Exp. Bot.	67(9)	2689-98	2016	_	OsAKT1, Os-AKT1, AKT1
42928	26935448	Cao J., Jiang M., Li P., Chu Z.	Genome-wide identification and evolutionary analyses of the PP2C gene family with their expression profiling in response to multiple stresses in Brachypodium distachyon.	BMC Genomics	17(1)	175	2016		
42929	27029856	Liu T.Y., Huang T.K., Yang S.Y., Hong Y.T., Huang S.M., Wang F.N., Chiang S.F., Tsai S.Y., Lu W.C., Chiou T.J.	Identification of plant vacuolar transporters mediating phosphate storage.	Nat Commun	7	11095	2016		
42930	26987543	Kim S.R., Ramos J., Ashikari M., Virk P.S., Torres E.A., Nissila E., Hechanova S.L., Mauleon R., Jena K.K.	Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.	Rice (N Y)	9(1)	12	2016	TGW6,GHD7,GN1A,APO1,WFP,GS5,NAL1,DEP1	tgw6, OsSTRL7, STRL7,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,OsSCP26, SCP26, OsGS5,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
42931	26979310	Mao H., Yu L., Li Z., Liu H., Han R.	Molecular evolution and gene expression differences within the HD-Zip transcription factor family of Zea mays L.	Genetica	144(2)	243-57	2016		
42932	26979747	Ling Y., Weilin Z.	Genetic and biochemical mechanisms of rice resistance to planthopper.	Plant Cell Rep.			2016		
42933	27153728	Zhang Y., Zang Q., Xu B., Zheng W., Ban R., Zhang H., Yang Y., Hao Q., Iqbal F., Li A., Shi Q.	isomiR Bank: a research resource for tracking IsomiRs.	Bioinformatics			2016		
42934	27031246	Park C.H., Shirsekar G., Bellizzi M., Chen S., Songkumarn P., Xie X., Shi X., Ning Y., Zhou B., Suttiviriya P., Wang M., Umemura K., Wang G.L.	The E3 ligase APIP10 Connects the Effector AvrPiz-t to the NLR receptor Piz-t in Rice.	PLoS Pathog.	12(3)	e1005529	2016	PIZT,APIP10,PAL1,KS4	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,OsAPIP10,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16
42935	26951048	Chen M., Tan Q., Sun M., Li D., Fu X., Chen X., Xiao W., Li L., Gao D.	Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy.	Mol. Genet. Genomics	291(3)	1319-32	2016		
42936	26850149	Kazama T., Itabashi E., Fujii S., Nakamura T., Toriyama K.	Mitochondrial ORF79 levels determine pollen abortion in cytoplasmic male sterile rice.	Plant J.	85(6)	707-16	2016		
42937	27017433	Ma J., Sheng H., Li X., Wang L.	iTRAQ-based proteomic analysis reveals the mechanisms of silicon-mediated cadmium tolerance in rice (Oryza sativa) cells.	Plant Physiol. Biochem.	104	71-80	2016		
42938	26809460	Xu J., Huang X., Lan H., Zhang H., Huang J.	Rearrangement of nitrogen metabolism in rice (Oryza sativa L.) under salt stress.	Plant Signal Behav	11(3)	e1138194	2016		
42939	26926666	Fu C.Y., Liu W.G., Liu D.L., Li J.H., Zhu M.S., Liao Y.L., Liu Z.R., Zeng X.Q., Wang F.	Genome-wide DNA polymorphism in the indica rice varieties RGD-7S and Taifeng B as revealed by whole genome re-sequencing.	Genome	59(3)	197-207	2016		
42940	26969003	Ta K.N., Sabot F., Adam H., Vigouroux Y., De Mita S., Ghesqui?re A., Do N.V., Gantet P., Jouannic S.	miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species.	Rice (N Y)	9(1)	10	2016	MEL1,_,MIR2118F,SHO1	mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,PH12, PH-12, phasiPH12-1 ,miR2118f, osa-miR2118f, osa-MIR2118f,sho1, DCL4, OsDCL4, Os DCL4, Dcl4 
42941	26995294	Hu X., Wang C., Fu Y., Liu Q., Jiao X., Wang K.	Expanding the Range of CRISPR/Cas9 Genome Editing in Rice.	Mol Plant			2016		
42942	27029818	Shankar R., Bhattacharjee A., Jain M.	Transcriptome analysis in different rice cultivars provides novel insights into desiccation and salinity stress responses.	Sci Rep	6	23719	2016		
42943	26979330	Kobae Y., Ohmori Y., Saito C., Yano K., Ohtomo R., Fujiwara T.	Phosphate Treatment Strongly Inhibits New Arbuscule Development But Not the Maintenance of Arbuscule in Mycorrhizal Rice Roots.	Plant Physiol.	171(1)	566-79	2016		
42944	27155375	Sharma A., Hussain A., Mun B.G., Imran Q.M., Falak N., Lee S.U., Kim J.Y., Hong J.K., Loake G.J., Ali A., Yun B.W.	Comprehensive analysis of plant Rapid alkalization factor (RALF) genes.	Plant Physiol. Biochem.	106	82-90	2016	RALF38,RALF26,RALF31,RALF43,RALF5,RALF34,RALF24,RALF6,RALF37,RALF16,RALF14,RALF17,RALF13,RALF25,_,RALF41,RALF23,RALF35,_,RALF42,RALF4,RALF40,RALF2,RALF32,RALF19,RALF21,RALF20,RALF7,RALF9,RALF27,RIR1B,RALF12,RALF10,RALF15,RALF11,RALF1,RALF18,RALF33,RALF3,RALF39,RALF29,RALF36,RALF8	OsRALF-38, OsRALF38, RALF-38,OsRALF-26, OsRALF26, RALF-26,OsRALF-31, OsRALF31, RALF-31,OsRALF-43, OsRALF43, RALF-43,OsRALF-5, OsRALF5, RALF-5,OsRALF-34, OsRALF34, RALF-34,OsRALF-24, OsRALF24, RALF-24,OsRALF-6, OsRALF6, RALF-6,OsRALF-37, OsRALF37, RALF-37,OsRALF-16, OsRALF16, RALF-16,OsRALF-14, OsRALF14, RALF-14,OsRALF-17, OsRALF17, RALF-17,OsRALF-13, OsRALF13, RALF-13,OsRALF-25, OsRALF25, RALF-25,RIR1b, Rir1b, OsRALF-30, OsRALF30, RALF-30, RALF30,OsRALF-41, OsRALF41, RALF-41,OsRALF-23, OsRALF23, RALF-23,OsRALF-35, OsRALF35, RALF-35,bphi008a, BpHi008A, OsRALF-22, OsRALF22, RALF-22, RALF22,OsRALF-42, OsRALF42, RALF-42,OsRALF-4, OsRALF4, RALF-4,OsRALF-40, OsRALF40, RALF-40,OsRALF-2, OsRALF2, RALF-2,OsRALF-32, OsRALF32, RALF-32,OsRALF-19, OsRALF19, RALF-19,OsRALF-21, OsRALF21, RALF-21,OsRALF-20, OsRALF20, RALF-20,OsRALF-7, OsRALF7, RALF-7,OsRALF-9, OsRALF9, RALF-9,OsRALF-27, OsRALF27, RALF-27,Rir1b, Rir1a, OsRALF-28, OsRALF28, RALF-28, RALF28,OsRALF-12, OsRALF12, RALF-12,OsRALF-10, OsRALF10, RALF-10,OsRALF-15, OsRALF15, RALF-15,OsRALF-11, OsRALF11, RALF-11,OsRALF-1, OsRALF1, RALF-1,OsRALF-18, OsRALF18, RALF-18,OsRALF-33, OsRALF33, RALF-33,OsRALF-3, OsRALF3, RALF-3,OsRALF-39, OsRALF39, RALF-39,OsRALF-29, OsRALF29, RALF-29,OsRALF-36, OsRALF36, RALF-36,OsRALF-8, OsRALF8, RALF-8
42945	26991872	Nemoto Y., Nonoue Y., Yano M., Izawa T.	Hd1,a CONSTANS Orthlog in Rice, Functions as an Ehd1 Repressor Through Interaction with Monocot-Specific CCT-Domain Protein Ghd7.	Plant J.			2016	EF1	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
42946	26929041	Takahashi I., Fukui K., Asami T.	Chemical modification of phenoxyfuranone-type strigolactone mimic for selective effects on rice tillering or Striga hermonthica seed germination.	Pest Manag. Sci.			2016		
42947	27012284	Yates G., Srivastava A.K., Sadanandom A.	SUMO proteases: uncovering the roles of deSUMOylation in plants.	J. Exp. Bot.	67(9)	2541-8	2016		
42948	27019432	Wu J., Jin X., Zhao Y., Dong Q., Jiang H., Ma Q.	Evolution of the defensin-like gene family in grass genomes.	J. Genet.	95(1)	53-62	2016	_,_,_,_,_,_,_,CAL1,_,_,_,_	DEFL3, OsDEFL3, OsDf-03, Df-03,DEFL11, OsDEFL11, OsDf-11, Df-11,DEFL1, OsDEFL1, OsDf-01, Df-01,DEFL5, OsDEFL5, OsDf-05, Df-05,DEFL4, OsDEFL4, OsDf-04, Df-04,DEFL12, OsDEFL12, OsDf-12, Df-12,DEFL8, OsDEFL8, OsDf-08, Df-08,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1,DEFL10, OsDEFL10, OsDf-10, Df-10,DEFL9, OsDEFL9, OsDf-09, Df-09,OsPDF1.2, DEFL6, OsDEFL6, OsDf-06, Df-06,OsEnS-25, DEFL2, OsDEFL2, OsDf-02, Df-02
42949	26984283	Mahesh H.B., Shirke M.D., Singh S., Rajamani A., Hittalmani S., Wang G.L., Gowda M.	Indica rice genome assembly, annotation and mining of blast disease resistance genes.	BMC Genomics	17(1)	242	2016		
42950	26929151	Yang H., Wei H., Ma G., Antunes M.S., Vogt S., Cox J., Zhang X., Liu X., Bu L., Gleber S.C., Carpita N.C., Makowski L., Himmel M.E., Tucker M.P., McCann M.C., Murphy A.S., Peer W.A.	Cell wall targeted in planta iron accumulation enhances biomass conversion and seed iron concentration in Arabidopsis and rice.	Plant Biotechnol. J.			2016		
42951	27015846	Tanabe K., Hojo Y., Shinya T., Galis I.	Molecular evidence for biochemical diversification of phenolamide biosynthesis in rice plants.	J Integr Plant Biol			2016	_,_,PHT3,JAR1,AHT1	OsAT4c, AT4c,,Os-PHT3, OsPHT3,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,Os-AHT1, OsAHT1
42952	27003905	Dedecker M., Van Leene J., De Winne N., Eeckhout D., Persiau G., Van De Slijke E., Cannoot B., Vercruysse L., Dumoulin L., Wojsznis N., Gevaert K., Vandenabeele S., De Jaeger G.	Transferring an optimized TAP-toolbox for the isolation of protein complexes to a portfolio of rice tissues.	Plant Mol. Biol.			2016	CDKF;1,_,_,_,_,_,_,_,_,_,_,_,ASN1,_,_,_,V3,_,_,_,_,_,_,CDKD;1,CYCH;1,_,_,_,SEU,_,_,TAD1	CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,MAT1 ,,APC11, OsAPC11,APC7, OsAPC7,APC1, OsAPC1,OsEnS-58,OsAPC6, APC6,,APC5, OsAPC5,APC2, OsAPC2,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,OsASN1, OsAS1, AS1,,SRZ1,,v3, RNRL1, rnrl1, RNR1, RNRL,VLN2, OsVLN2, Os VLN2,,APC8, OsAPC8,APC3, OsAPC3,,OsLon1, LON1, OsLonP4, LONP4, LON2 ,CDKD;1, Orysa;CDKD;1, R2, CAK R2, CDKD1;3 ,Os;cycH;1, Orasa;CycH1;1, cycH1, CYCH1 ,APC4, OsAPC4,OsXPD, XPD ,,OsSEU, OsSEU1, SEU1 ,,APC10 ,TAD1, OsCCS52A, TE, OsWD40-61, TAD1/TE, CCS52A1 
42953	26991510	Wu L.B., Ueda Y., Lai S.K., Frei M.	Shoot tolerance mechanisms to iron toxicity in rice (Oryza sativa L.).	Plant Cell Environ.			2016		
42954	26954091	Sun X., Zhang Z., Wu J., Cui X., Feng D., Wang K., Xu M., Zhou L., Han X., Gu X., Lu T.	The Oryza sativa Regulator HDR1 Associates with the Kinase OsK4 to Control Photoperiodic Flowering.	PLoS Genet.	12(3)	e1005927	2016	RFT1,SE1,OSK4,EF1,HDR1,HD3A	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
42955	27009386	He Q., Jones D.C., Li W., Xie F., Ma J., Sun R., Wang Q., Zhu S., Zhang B.	Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii.	Sci Rep	6	22980	2016		
42956	26945049	Zhang C., Liu J., Zhao T., Gomez A., Li C., Yu C., Li H., Lin J., Yang Y., Liu B., Lin C.	A Drought-Inducible Transcription Factor Delays Reproductive Timing in Rice.	Plant Physiol.	171(1)	334-43	2016		
42957	26993328	Mishra P., Mishra V., Takabe T., Rai V., Singh N.K.	Elucidation of salt-tolerance metabolic pathways in contrasting rice genotypes and their segregating progenies.	Plant Cell Rep.	35(6)	1273-86	2016		
42958	26959033	Huang Z., Liu X., Jin M., Ding C., Jiang J., Wu L.	Deriving the Characteristic Scale for Effectively Monitoring Heavy Metal Stress in Rice by Assimilation of GF-1 Data with the WOFOST Model.	Sensors (Basel)	16(3)		2016		
42959	27000876	Zheng K., Zhao J., Lin D., Chen J., Xu J., Zhou H., Teng S., Dong Y.	The Rice TCM5 Gene Encoding a Novel Deg protease protein is Essential for Chloroplast Development under High Temperatures.	Rice (N Y)	9(1)	13	2016	RPOB,PSAA,V3,RBCS,PSBA,RBCL,_,TCM5,V1,V2	rpoB, RpoB, Rpobeta,PsaA, psaA, PsAA1,v3, RNRL1, rnrl1, RNR1, RNRL,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,rbcL, rbcA, OsrbcL,PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp,OsDegp7, DEGP7, OsDeg10,v1, NUS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK
42960	26991499	Cao H., Zhuo L., Su Y., Sun L., Wang X.	Non-specific phospholipase C1 affects silicon distribution and mechanical strength in stem nodes of rice.	Plant J.			2016	NPC5,LSI6,NPC4,NPC1,NPC3,NPC2	OsNPC6, OsNPC5, NPC6,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsNPC3, OsNPC4, NPC3,OsNPC1,OsNPC4, OsNPC3, NPC4,OsNPC2
42961	27180265	Li T., Liu B., Chen C.Y., Yang B.	TALEN-Mediated Homologous Recombination Produces Site-Directed DNA Base Change And Herbicide-Resistant Rice.	J Genet Genomics			2016		
42962	26780420	Wang Y., Wu J., Kim S.G., Tsuda K., Gupta R., Park S.Y., Kim S.T., Kang K.Y.	Magnaporthe oryzae-Secreted Protein MSP1 Induces Cell Death and Elicits Defense Responses in Rice.	Mol. Plant Microbe Interact.	29(4)	299-312	2016		
42963	26801057	Zhang H., He D., Yu J., Li M., Damaris R.N., Gupta R., Kim S.T., Yang P.	Analysis of dynamic protein carbonylation in rice embryo during germination through AP-SWATH.	Proteomics	16(6)	989-1000	2016		
42964	26932667	Ghosh P., Sen S., Chakraborty J., Das S.	Monitoring the efficacy of mutated Allium sativum leaf lectin in transgenic rice against Rhizoctonia solani.	BMC Biotechnol.	16	24	2016		
42965	26959982	Wang D.R., Bunce J.A., Tomecek M.B., Gealy D., McClung A., McCouch S.R., Ziska L.H.	Evidence for divergence of response in INDICA, Japonica, and wild rice to high CO2 x temperature interaction.	Glob Chang Biol			2016		
42966	26919041	Byeon Y., Back K.	Low melatonin production by suppression of either Serotonin N-acetyltransferase or N-acetylserotonin methyltransferase in rice causes seedling growth retardation with yield penalty, abiotic stress susceptibility, and enhanced coleoptile growth under anoxic conditions.	J. Pineal Res.	60(3)	348-59	2016		
42967	27025363	Zhang L., Li Q., Chen J.F., Chen W.S.	Computational identification and systematic classification of novel GRAS genes in Isatis indigotica.	Chinese Journal of Natural Medicines	14(3)	161-76	2016		
42968	26936896	Chen C., Begcy K., Liu K., Folsom J.J., Wang Z., Zhang C., Walia H.	Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity.	Plant Physiol.	171(1)	606-22	2016		
42969	26961568	Kumari C., Dutta T.K., Banakar P., Rao U.	Comparing the defence-related gene expression changes upon root-knot nematode attack in susceptible versus resistant cultivars of rice.	Sci Rep	6	22846	2016		
42970	26995311	Li M., Ashraf U., Tian H., Mo Z., Pan S., Anjum S.A., Duan M., Tang X.	Manganese-induced regulations in growth, yield formation, quality characters, rice aroma and enzyme involved in 2-acetyl-1-pyrroline biosynthesis in fragrant rice.	Plant Physiol. Biochem.	103	167-75	2016		
42971	27017220	Chakraborty M., Reddy P.S., Mustafa G., Rajesh G., Narasu V.M., Udayasuriyan V., Rana D.	Transgenic rice expressing the Cry2AX1 gene confers resistance to multiple lepidopteran pests.	Transgenic Res.			2016		
42972	27038670	Taniguchi M., Ochiai A., Fukuda S., Sato T., Saitoh E., Kato T., Tanaka T.	AmyI-1-18, a cationic alpha-helical antimicrobial octadecapeptide derived from alpha-amylase in rice, inhibits the translation and folding processes in a protein synthesis system.	J. Biosci. Bioeng.			2016		
42973	26945855	Feng C., Zhang X., Wu T., Yuan B., Ding X., Yao F., Chu Z.	The polygalacturonase-inhibiting protein 4 (OsPGIP4), a potential component of the qBlsr5a locus, confers resistance to bacterial leaf streak in rice.	Planta	243(5)	1297-308	2016		
42974	26810451	Chen D., Li Y., Fang T., Shi X., Chen X.	Specific roles of tocopherols and tocotrienols in seed longevity and germination tolerance to abiotic stress in transgenic rice.	Plant Sci.	244	31-9	2016		
42975	26994840	Jiao Y., Yang Y., Meissle M., Peng Y., Li Y.	Comparison of susceptibility of Chilo suppressalis and Bombyx mori to five Bacillus thuringiensis proteins.	J. Invertebr. Pathol.	136	95-9	2016		
42976	26940571	Wang Z., Wang Y., Yang J., Hu K., An B., Deng X., Li Y.	Reliable Selection and Holistic Stability Evaluation of Reference Genes for Rice Under 22 Different Experimental Conditions.	Appl. Biochem. Biotechnol.			2016	_,_,PRF2,LRT2,GRP3,TPI,_	GOS2, OseIF1, OsGOS2, SUI1, PtfS ,Edf ,OsPRF2,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsGRP3, RTP, RBP-152 ,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,ARF, ARF1, OsARFA1b, ARFA1b
42977	26970512	Wang C., Yang Y., Wang H., Ran X., Li B., Zhang J., Zhang H.	Ectopic expression of a cytochrome P450 monooxygenase gene PtCYP714A3 from Populus trichocarpa reduces shoot growth and improves tolerance to salt stress in transgenic rice.	Plant Biotechnol. J.			2016		
42978	26833589	Wei F.J., Kuang L.Y., Oung H.M., Cheng S.Y., Wu H.P., Huang L.T., Tseng Y.T., Chiou W.Y., Hsieh-Feng V., Chung C.H., Yu S.M., Lee L.Y., Gelvin S.B., Hsing Y.I.	Somaclonal variation does not preclude the use of rice transformants for genetic screening.	Plant J.	85(5)	648-59	2016		
42979	26993329	Duan E., Wang Y., Liu L., Zhu J., Zhong M., Zhang H., Li S., Ding B., Zhang X., Guo X., Jiang L., Wan J.	Pyrophosphate: fructose-6-phosphate 1-phosphotransferase (PFP) regulates carbon metabolism during grain filling in rice.	Plant Cell Rep.	35(6)	1321-31	2016	_	OsPFPB, PFPB, OsPFP-B, PFP-B, PFPbeta
42980	27162494	Abdula S.E., Lee H.J., Kim J., Ni?o MC., Jung Y.J., Cho Y.C., Nou I., Kang K.K., Cho Y.G.	BrUGE1 transgenic rice showed improved growth performance with enhanced drought tolerance.	Breed. Sci.	66(2)	226-33	2016		
42981	27005412	Byeon Y., Back K.	Melatonin production in Escherichia coli by dual expression of serotonin N-acetyltransferase and caffeic acid O-methyltransferase.	Appl. Microbiol. Biotechnol.			2016		
42982	26970777	Li K., Xu C., Huang J., Liu W., Zhang L., Wan W., Tao H., Li L., Lin S., Harrison A., He H.	Prediction and identification of the effectors of heterotrimeric G proteins in rice (Oryza sativa L.).	Brief. Bioinformatics			2016		
42983	26862573	Hou Y., Tong X., Wang Y., Qiu J., Li Z., Zhang W., Huang S., Zhang J.	Data set from a comprehensive phosphoproteomic analysis of rice variety IRBB5 in response to bacterial blight.	Data Brief	6	282-5	2016		
42984	27035683	Xu H.H., Liu S.J., Song S.H., Wang R.X., Wang W.Q., Song S.Q.	Proteomics analysis reveals distinct involvement of embryo and endosperm proteins during seed germination in dormant and non-dormant rice seeds.	Plant Physiol. Biochem.	103	219-42	2016		
42985	27025496	Bai Z., Chen J., Liao Y., Wang M., Liu R., Ge S., Wing R.A., Chen M.	The impact and origin of copy number variations in the Oryza species.	BMC Genomics	17(1)	261	2016		
42986	27093133	Rathinasabapathi P., Purushothaman N., Parani M.	Genome-wide DNA polymorphisms in Kavuni, a traditional rice cultivar with nutritional and therapeutic properties.	Genome	59(5)	363-6	2016		
42987	27000868	Zheng G., Li L., Li W.	Glycerolipidome responses to freezing- and chilling-induced injuries: examples in Arabidopsis and rice.	BMC Plant Biol.	16(1)	70	2016		
42988	26906115	Zhao G., Shi J., Liang W., Zhang D.	ATP binding cassette G transporters and plant male reproduction.	Plant Signal Behav	11(3)	e1136764	2016		
42989	26946285	Yang J., Liu Z., Wan X., Zheng G., Yang J., Zhang H., Guo L., Wang X., Zhou X., Guo Q., Xu R., Zhou G., Peters M., Zhu G., Wei R., Tian L., Han X.	Interaction between sulfur and lead in toxicity, iron plaque formation and lead accumulation in rice plant.	Ecotoxicol. Environ. Saf.	128	206-12	2016		
42990	27162502	Hori K., Suzuki K., Iijima K., Ebana K.	Variation in cooking and eating quality traits in Japanese rice germplasm accessions.	Breed. Sci.	66(2)	309-18	2016		
42991	26973288	Indoliya Y., Tiwari P., Chauhan A.S., Goel R., Shri M., Bag S.K., Chakrabarty D.	Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.	Sci Rep	6	23050	2016		
42992	27025598	Mishra S., Singh B., Panda K., Singh B.P., Singh N., Misra P., Rai V., Singh N.K.	Association of SNP Haplotypes of HKT Family Genes with salt tolerance in Indian Wild Rice Germplasm.	Rice (N Y)	9(1)	15	2016		
42993	26995314	Fahad S., Hussain S., Saud S., Hassan S., Tanveer M., Ihsan M.Z., Shah A.N., Ullah A., Nasrullah, Khan F., Ullah S., Alharby H., Nasim W., Wu C., Huang J.	A combined application of biochar and phosphorus alleviates heat-induced adversities on physiological, agronomical and quality attributes of rice.	Plant Physiol. Biochem.	103	191-8	2016		
42994	26836501	Xiong Y., Peng X., Cheng Z., Liu W., Wang G.L.	A comprehensive catalog of the lysine-acetylation targets in rice (Oryza sativa) based on proteomic analyses.	J Proteomics	138	20-9	2016		
42995	26900141	Zhang Z., Xu Y., Xie Z., Li X., He Z.H., Peng X.X.	Association-Dissociation of glycolate oxidase with Catalase in Rice: A Potential Switch to Modulate Intracellular H2O2 Levels.	Mol Plant	9(5)	737-48	2016	CATB,CATC,GLO5,GLO1	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,GLO4, OsGLO4, OsGLO5,GLO1, OsGLO1
42996	26879398	Cui Y., Liu Z., Li Y., Zhou F., Chen H., Lin Y.	Application of a novel phosphinothricin N-acetyltransferase (RePAT) gene in developing glufosinate-resistant rice.	Sci Rep	6	21259	2016		
42997	26922174	Liu Z., Zhu C., Jiang Y., Tian Y., Yu J., An H., Tang W., Sun J., Tang J., Chen G., Zhai H., Wang C., Wan J.	Association mapping and genetic dissection of nitrogen use efficiency-related traits in rice (Oryza sativa L.).	Funct. Integr. Genomics	16(3)	323-33	2016		
42998	26869021	Chen L., Han J., Deng X., Tan S., Li L., Li L., Zhou J., Peng H., Yang G., He G., Zhang W.	Expansion and stress responses of AP2/EREBP superfamily in Brachypodium Distachyon.	Sci Rep	6	21623	2016		
42999	26907259	Noh T.H., Song E.S., Kim H.I., Kang M.H., Park Y.J.	Transcriptome-Based Identification of Differently Expressed Genes from Xanthomonas oryzae pv. oryzae Strains Exhibiting Different Virulence in Rice Varieties.	Int J Mol Sci	17(2)		2016		
43000	26892000	Agarrwal R., Padmakumari A.P., Bentur J.S., Nair S.	Metabolic and transcriptomic changes induced in host during hypersensitive response mediated resistance in rice against the Asian rice gall midge.	Rice (N Y)	9(1)	5	2016		
43001	26842983	Siena L.A., Ortiz J.P., Calderini O., Paolocci F., C?ceres ME., Kaushal P., Grisan S., Pessino S.C., Pupilli F.	An apomixis-linked ORC3-like pseudogene is associated with silencing of its functional homolog in apomictic Paspalum simplex.	J. Exp. Bot.	67(6)	1965-78	2016		
43002	26879887	Kim S.I., Song J.T., Jeong J.Y., Seo H.S.	Niclosamide inhibits leaf blight caused by Xanthomonas oryzae in rice.	Sci Rep	6	21209	2016		
43003	26850838	Taniguchi M., Ochiai A., Takahashi K., Nakamichi S.I., Nomoto T., Saitoh E., Kato T., Tanaka T.	Effect of alanine, leucine, and arginine substitution on antimicrobial activity against Candida albicans and action mechanism of a cationic octadecapeptide derived from alpha-amylase of rice.	Biopolymers			2016		
43004	26729506	Iwamoto M., Tagiri A.	MicroRNA-targeted transcription factor gene RDD1 promotes nutrient ion uptake and accumulation in rice.	Plant J.	85(4)	466-77	2016		
43005	26885647	Meena R.K., Shome S., Thakur S.	Prediction of Phenotypic Effects of Variants Observed in LOC_Os04g36720 of FRO1 Gene in Rice (Oryza sativa L.).	Interdiscip Sci			2016		
43006	26883045	Simmonds J., Scott P., Brinton J., Mestre T.C., Bush M., Del Blanco A., Dubcovsky J., Uauy C.	A splice acceptor site mutation in TaGW2-A1 increases thousand grain weight in tetraploid and hexaploid wheat through wider and longer grains.	Theor. Appl. Genet.	129(6)	1099-112	2016		
43007	26878189	Potter K.C., Jia M., Hong Y.J., Tantillo D., Peters R.J.	Product Rearrangement from Altering a Single Residue in the Rice syn-Copalyl Diphosphate Synthase.	Org. Lett.	18(5)	1060-3	2016		
43008	26912801	Yi J., Lee Y.S., Lee D.Y., Cho M.H., Jeon J.S., An G.	OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.	J. Exp. Bot.	67(8)	2425-37	2016	MAPK6,PNH1,ROC1,SCR,OSH1	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsPNH1,Roc1(t), GL2-1,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75
43009	26910783	Sawada H., Tsukahara K., Kohno Y., Suzuki K., Nagasawa N., Tamaoki M.	Elevated Ozone Deteriorates Grain Quality of Japonica Rice cv. Koshihikari, Even if it Does Not Cause Yield Reduction.	Rice (N Y)	9(1)	7	2016		
43010	26847792	Ren D., Rao Y., Huang L., Leng Y., Hu J., Lu M., Zhang G., Zhu L., Gao Z., Dong G., Guo L., Qian Q., Zeng D.	Fine Mapping Identifies a New QTL for Brown Rice Rate in Rice (Oryza Sativa L.).	Rice (N Y)	9(1)	4	2016		
43011	26884603	Hwang Y., Lee H., Lee Y.S., Cho H.T.	Cell wall-associated root hair SPECIFIC 10, a proline-rich receptor-like kinase, is a negative modulator of Arabidopsis root hair growth.	J. Exp. Bot.	67(6)	2007-22	2016	_,_	RHS10,OsSTA174, RHS10
43012	26829979	De Vleesschauwer D., Seifi H.S., Filipe O., Haeck A., Huu S.N., Demeestere K., H?fte M.	The DELLA Protein SLR1 Integrates and Amplifies Salicylic Acid- and Jasmonic Acid-Dependent Innate Immunity in Rice.	Plant Physiol.	170(3)	1831-47	2016		
43013	26909982	C?mertpay G., Baloch F.S., Derya M., Andeden E.E., Alsaleh A., S?rek H., ?zkan H.	Population structure of rice varieties used in Turkish rice breeding programs determined using simple-sequence repeat and inter-primer binding site-retrotransposon data.	Genet. Mol. Res.	15(1)		2016		
43014	26860200	Spindel J.E., Begum H., Akdemir D., Collard B., Redo?a E., Jannink J.L., McCouch S.	Genome-wide prediction models that incorporate de novo GWAS are a powerful new tool for tropical rice improvement.	Heredity	116(4)	395-408	2016		
43015	26850278	Dawood T., Yang X., Visser E.J., Te Beek TA., Kensche P.R., Cristescu S.M., Lee S., Flokov? K., Nguyen D., Mariani C., Rieu I.	A Co-Opted Hormonal Cascade Activates Dormant Adventitious Root Primordia upon Flooding in Solanum dulcamara.	Plant Physiol.	170(4)	2351-64	2016		
43016	26848586	Wang D., Qin B., Li X., Tang D., Zhang Y., Cheng Z., Xue Y.	Nucleolar DEAD-box RNA helicase TOGR1 Regulates Thermotolerant Growth as a Pre-rRNA Chaperone in Rice.	PLoS Genet.	12(2)	e1005844	2016	GOLS1,WSI76,APX2,TOGR1	OsGolS1, GolS1,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,DDX47, OsRH10
43017	26888633	Liu H., Yang C., Li L.	Shade-induced stem elongation in rice seedlings: Implication of tissue-specific phytohormone regulation.	J Integr Plant Biol			2016		
43018	26831622	Hayashi S., Wakasa Y., Ozawa K., Takaiwa F.	Characterization of IRE1 ribonuclease-mediated mRNA decay in plants using transient expression analyses in rice protoplasts.	New Phytol.	210(4)	1259-68	2016		
43019	26891616	Liang G., Zhang H., Lou D., Yu D.	Selection of highly efficient sgRNAs for CRISPR/Cas9-based plant genome editing.	Sci Rep	6	21451	2016		
43020	26848096	Woods D.P., McKeown M.A., Dong Y., Preston J.C., Amasino R.M.	Evolution of VRN2/Ghd7-Like Genes in Vernalization-Mediated Repression of Grass Flowering.	Plant Physiol.	170(4)	2124-35	2016		
43021	26898554	Pandey V., Ansari M.W., Tula S., Yadav S., Sahoo R.K., Shukla N., Bains G., Badal S., Chandra S., Gaur A.K., Kumar A., Shukla A., Kumar J., Tuteja N.	Dose-dependent response of Trichoderma harzianum in improving drought tolerance in rice genotypes.	Planta	243(5)	1251-64	2016		
43022	26829414	Chen H.W., Shao K.H., Wang S.J.	Light-mediated modulation of helix angle and rate of seminal root tip movement determines root morphology of young rice seedlings.	Plant Signal Behav	11(2)	e1141861	2016		
43023	26907500	Chang Y.L., Li W.Y., Miao H., Yang S.Q., Li R., Wang X., Li W.Q., Chen K.M.	Comprehensive Genomic Analysis and Expression Profiling of the NOX Gene Families under Abiotic Stresses and Hormones in Plants.	Genome Biol Evol	8(3)	791-810	2016		
43024	26927068	Dou M., Cheng S., Zhao B., Xuan Y., Shao M.	The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.	Int J Mol Sci	17(3)		2016		
43025	26867598	Manikandan R., Balakrishnan N., Sudhakar D., Udayasuriyan V.	Development of leaffolder resistant transgenic rice expressing Cry2AX1 gene driven by green tissue-specific rbcS promoter.	World J. Microbiol. Biotechnol.	32(3)	37	2016		
43026	26883225	Wen C., Zhao Q., Nie J., Liu G., Shen L., Cheng C., Xi L., Ma N., Zhao L.	Physiological controls of chrysanthemum DgD27 gene expression in regulation of shoot branching.	Plant Cell Rep.	35(5)	1053-70	2016		
43027	26893418	Meg?as E., Meg?as M., Ollero F.J., Hungria M.	Draft Genome Sequence of Pantoea ananatis Strain AMG521, a Rice Plant Growth-Promoting Bacterial Endophyte Isolated from the Guadalquivir Marshes in Southern Spain.	Genome Announc	4(1)		2016		
43028	26858364	Wang H., Jiao X., Kong X., Hamera S., Wu Y., Chen X., Fang R., Yan Y.	A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.	Plant Physiol.	170(4)	2365-77	2016	MADS27,MADS23,MIR444A,RDR1,MADS57	OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS23, MADS-23,OsMIR444a, osa-MIR444a, miR444aosa-miR444a osa-miR444a-3p.1 osa-miR444a-3p.2 osa-miR444a-5p,OsRDR1,OsMADS57, MADS-57
43029	26848538	Kroj T., Chanclud E., Michel-Romiti C., Grand X., Morel J.B.	Integration of decoy domains derived from protein targets of pathogen effectors into plant immune receptors is widespread.	New Phytol.	210(2)	618-26	2016		
43030	26909954	Yu Y., Cui Y.C., Ren C., Rocha P.S., Peng M., Xu G.Y., Wang M.L., Xia X.J.	Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses.	Genet. Mol. Res.	15(1)		2016		
43031	26860054	Hong M.J., Kim D.Y., Seo Y.W.	Interactions between wheat Tubby-like and SKP1-like proteins.	Genes Genet. Syst.	90(5)	293-304	2016		
43032	26993232	Panda B.B., Badoghar A.K., Sekhar S., Shaw B.P., Mohapatra P.K.	1-MCP treatment enhanced expression of genes controlling endosperm cell division and starch biosynthesis for improvement of grain filling in a dense-panicle rice cultivar.	Plant Sci.	246	11-25	2016		
43033	26935445	Takimoto S., Sugiura A., Minami S., Tasaka T., Nakagawa Y., Miyagawa H.	In silico exploration for agonists/antagonists of brassinolide.	Bioorg. Med. Chem. Lett.	26(7)	1709-14	2016		
43034	26907775	Xingliang M., Yaoguang L.	[CRISPR/Cas9-based genome editing systems and the analysis of targeted genome mutations in plants].	Yi Chuan	38(2)	118-25	2016		
43035	26842979	Mori A., Fukuda T., Vejchasarn P., Nestler J., Pariasca-Tanaka J., Wissuwa M.	The role of root size versus root efficiency in phosphorus acquisition in rice.	J. Exp. Bot.	67(4)	1179-89	2016		
43036	26936532	Chung S.I., Rico C.W., Lee S.C., Kang M.Y.	Instant rice made from white and pigmented giant embryonic rice reduces lipid levels and body weight in high fat diet-fed mice.	Obes Res Clin Pract			2016		
43037	26832990	Yamori W., Makino A., Shikanai T.	A physiological role of cyclic electron transport around photosystem I in sustaining photosynthesis under fluctuating light in rice.	Sci Rep	6	20147	2016	PGR5,CRR6	OsPGR5,OsCRR6
43038	26873698	Zhao D.S., Zhang C.Q., Li Q.F., Yang Q.Q., Gu M.H., Liu Q.Q.	A residue substitution in the plastid ribosomal protein L12/AL1 produces defective plastid ribosome and causes early seedling lethality in rice.	Plant Mol. Biol.	91(1-2)	161-77	2016		
43039	26833720	Cheng J., Wang L., Zeng P., He Y., Zhou R., Zhang H., Wang Z.	Identification of genes involved in rice seed priming in the early imbibition stage.	Plant Biol (Stuttg)			2016		
43040	26903527	Lin H., Karki S., Coe R.A., Bagha S., Khoshravesh R., Balahadia C.P., Ver Sagun J., Tapia R., Israel W.K., Montecillo F., de Luna A., Danila F.R., Lazaro A., Realubit C.M., Acoba M.G., Sage T.L., von Caemmerer S., Furbank R.T., Cousins A.B., Hibberd J.M., Quick W.P., Covshoff S.	Targeted Knockdown of GDCH in Rice Leads to a Photorespiratory-Deficient Phenotype Useful as a Building Block for C4 Rice.	Plant Cell Physiol.			2016		
43041	26842621	Hu H., Wang W., Zhu Z., Zhu J., Tan D., Zhou Z., Mao C., Chen X.	GIPS: A Software Guide to Sequencing-Based Direct Gene Cloning in Forward Genetics Studies.	Plant Physiol.	170(4)	1929-34	2016		
43042	25639923	Zeng X.F., Li L., Li J.R., Zhao D.G.	Constitutive expression of McCHIT1-PAT enhances resistance to rice blast and herbicide, but does not affect grain yield in transgenic glutinous rice.	Biotechnol. Appl. Biochem.	63(1)	77-85	2016		
43043	26950923	Gao J., Fu H., Zhou X., Chen Z., Luo Y., Cui B., Chen G., Liu J.	Comparative proteomic analysis of seed embryo proteins associated with seed storability in rice (Oryza sativa L) during natural aging.	Plant Physiol. Biochem.	103	31-44	2016		
43044	26864209	Tamiru M., Takagi H., Abe A., Yokota T., Kanzaki H., Okamoto H., Saitoh H., Takahashi H., Fujisaki K., Oikawa K., Uemura A., Natsume S., Jikumaru Y., Matsuura H., Umemura K., Terry M.J., Terauchi R.	A chloroplast-localized protein LESION AND LAMINA BENDING affects defence and growth responses in rice.	New Phytol.	210(4)	1282-1297	2016	TIFY9,LLB,_,JIOSPR10,OPR5,YSS2	OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9 ,OsLLB, LCMT, OsMTS1, MTS1, PLS3,OsBDG1, BDG1 ,JIOsPR10, OsPR10, PR10 ,OsOPR5, OsOPR6, OsOPR06-2,OsNDPK2, NDPK2, BIP114
43045	26883042	Zheng W., Wang Y., Wang L., Ma Z., Zhao J., Wang P., Zhang L., Liu Z., Lu X.	Genetic mapping and molecular marker development for Pi65(t), a novel broad-spectrum resistance gene to rice blast using next-generation sequencing.	Theor. Appl. Genet.	129(5)	1035-44	2016	PI65	Pi65(t), Pi65,
43046	26842722	Veena M., Melvin P., Prabhu S.A., Shailasree S., Shetty H.S., Kini K.R.	Molecular cloning of a coiled-coil-nucleotide-binding-site-leucine-rich repeat gene from pearl millet and its expression pattern in response to the downy mildew pathogen.	Mol. Biol. Rep.	43(3)	117-28	2016		
43047	26872836	Yokosho K., Yamaji N., Fujii-Kashino M., Ma J.F.	Functional Analysis of a MATE Gene OsFRDL2 Revealed its Involvement in Al-Induced Secretion of Citrate, but a Lower Contribution to Al Tolerance in Rice.	Plant Cell Physiol.			2016		
43048	26977447	Xiong Y., Zhang K., Cheng Z., Wang G.L., Liu W.	Data for global lysine-acetylation analysis in rice (Oryza sativa).	Data Brief	7	411-7	2016		
43049	26922355	Chin H.S., Wu Y.P., Hour A.L., Hong C.Y., Lin Y.R.	Genetic and Evolutionary Analysis of Purple leaf Sheath in Rice.	Rice (N Y)	9(1)	8	2016		
43050	26864250	Liu L., Xu W., Hu X., Liu H., Lin Y.	W-box and G-box elements play important roles in early senescence of rice flag leaf.	Sci Rep	6	20881	2016		
43051	26830331	Shao E., Lin L., Chen C., Chen H., Zhuang H., Wu S., Sha L., Guan X., Huang Z.	Loop replacements with gut-binding peptides in Cry1Ab domain II enhanced toxicity against the brown planthopper, Nilaparvata lugens (St?l).	Sci Rep	6	20106	2016		
43052	26873975	Liu X., Li M., Liu K., Tang D., Sun M., Li Y., Shen Y., Du G., Cheng Z.	Semi-Rolled Leaf2 modulates rice leaf rolling by regulating abaxial side cell differentiation.	J. Exp. Bot.	67(8)	2139-50	2016	SH1,SRL2,YAB5,RL9,YAB7,_,_,_,_,YAB4,YAB3	YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,NRL2, OsSRL2, OsNRL2,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1,rl9, SLL1/RL9, SLL1,OsYAB7,OsSTA80,,,,OsYAB4, OsYAB7, TOB2, ,OsYAB3, OsYAB4, TOB3
43053	26907211	Dan Z., Hu J., Zhou W., Yao G., Zhu R., Zhu Y., Huang W.	Metabolic prediction of important agronomic traits in hybrid rice (Oryza sativa L.).	Sci Rep	6	21732	2016		
43054	26851365	Liu Q., Yang J., Zhang S., Zhao J., Feng A., Yang T., Wang X., Mao X., Dong J., Zhu X., Leung H., Leach J.E., Liu B.	OsGF14e positively regulates panicle blast resistance in rice.	Biochem. Biophys. Res. Commun.	471(1)	247-52	2016		
43055	26855133	Moraes de Freitas GP., Basu S., Ramegowda V., Braga E.B., Pereira A.	Comparative analysis of gene expression in response to cold stress in diverse rice genotypes.	Biochem. Biophys. Res. Commun.	471(1)	253-9	2016		
43056	26890603	Pandey V., Ansari M.W., Tula S., Sahoo R.K., Bains G., Kumar J., Tuteja N., Shukla A.	Ocimum sanctum leaf extract induces drought stress tolerance in rice.	Plant Signal Behav		0	2016		
43057	26741538	Dixit G., Singh A.P., Kumar A., Mishra S., Dwivedi S., Kumar S., Trivedi P.K., Pandey V., Tripathi R.D.	Reduced arsenic accumulation in rice (Oryza sativa L.) shoot involves sulfur mediated improved thiol metabolism, antioxidant system and altered arsenic transporters.	Plant Physiol. Biochem.	99	86-96	2016		
43058	26841834	Crowell S., Korniliev P., Falc?o A., Ismail A., Gregorio G., Mezey J., McCouch S.	Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters.	Nat Commun	7	10527	2016		
43059	26758024	Upadhyaya H.D., Wang Y.H., Sastry D.V., Dwivedi S.L., Prasad P.V., Burrell A.M., Klein R.R., Morris G.P., Klein P.E.	Association mapping of germinability and seedling vigor in sorghum under controlled low-temperature conditions.	Genome	59(2)	137-45	2016		
43060	26910860	Sasou A., Shigemitsu T., Saito Y., Tanaka M., Morita S., Masumura T.	Control of foreign polypeptide localization in specific layers of protein body type I in rice seed.	Plant Cell Rep.	35(6)	1287-95	2016		
43061	26942914	Zeng Y., Ji Z., Wen Z., Liang Y., Yang C.	Combination of Eight Alleles at Four Quantitative Trait Loci Determines Grain Length in Rice.	PLoS ONE	11(3)	e0150832	2016		
43062	27092937	Wang D., Qin Y., Fang J., Yuan S., Peng L., Zhao J., Li X.	A Missense Mutation in the Zinc Finger Domain of OsCESA7 Deleteriously Affects Cellulose Biosynthesis and Plant Growth in Rice.	PLoS ONE	11(4)	e0153993	2016		
43063	26834769	Wu H., Zheng Y., Liu J., Zhang H., Chen H.	Heme Oxygenase-1 Delays Gibberellin-Induced Programmed Cell Death of Rice Aleurone Layers Subjected to Drought Stress by Interacting with Nitric Oxide.	Front Plant Sci	6	1267	2015		
43064	26792122	Matsushima R., Maekawa M., Kusano M., Tomita K., Kondo H., Nishimura H., Crofts N., Fujita N., Sakamoto W.	Amyloplast Membrane Protein SUBSTANDARD STARCH GRAIN6 Controls Starch Grain Size in Rice Endosperm.	Plant Physiol.	170(3)	1445-59	2016	SSG6	OsACS6, ACS6
43065	27186018	Chakraborty M., Sairam Reddy P., Laxmi Narasu M., Krishna G., Rana D.	Agrobacterium-mediated genetic transformation of commercially elite rice restorer line using nptII gene as a plant selection marker.	Physiol Mol Biol Plants	22(1)	51-60	2016		
43066	26810156	Magwa R.A., Zhao H., Xing Y.	Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.).	BMC Genet.	17	28	2016		
43067	26760761	Montesinos L., Bund? M., Izquierdo E., Campo S., Badosa E., Rossignol M., Montesinos E., San Segundo B., Coca M.	Production of Biologically Active Cecropin A Peptide in Rice Seed Oil Bodies.	PLoS ONE	11(1)	e0146919	2016		
43068	26934377	Du Y., He W., Deng C., Chen X., Gou L., Zhu F., Guo W., Zhang J., Wang T.	Flowering-Related RING Protein 1 (FRRP1) Regulates flowering time and Yield Potential by Affecting histone H2B Monoubiquitination in Rice (Oryza Sativa).	PLoS ONE	11(3)	e0150458	2016	SE1,_,RFT1,HGW,HD3A,GHD7,LK3,GIF1,GW2,EHD2/RID1,MADS50,HD5,EF1,GW5	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsHUB2, HUB2, FRRP1,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,HGW,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,gif1, CIN2, OsCIN2, OsGIF1,OsGW2,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,qSW5/GW5, GSE5
43069	26943337	Tang Y., Qin S., Guo Y., Chen Y., Wu P., Chen Y., Li M., Jiang H., Wu G.	Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress.	PLoS ONE	11(3)	e0150879	2016		
43070	26818269	Shamsudin N.A., Swamy B.P., Ratnam W., Sta Cruz MT., Raman A., Kumar A.	Marker assisted pyramiding of drought yield QTLs into a popular Malaysian rice cultivar, MR219.	BMC Genet.	17	30	2016		
43071	27186017	Malviya N., Jaiswal P., Yadav D.	Genome- wide characterization of Nuclear Factor Y (NF-Y) gene family of sorghum [Sorghum bicolor (L.) Moench]: a bioinformatics approach.	Physiol Mol Biol Plants	22(1)	33-49	2016		
43072	26803502	Park K.Y., Kim E.Y., Seo Y.S., Kim W.T.	Constitutive expression of CaPLA1 conferred enhanced growth and grain yield in transgenic rice plants.	Plant Mol. Biol.	90(4-5)	517-32	2016		
43073	26781660	Gao D., Li Y., Kim K.D., Abernathy B., Jackson S.A.	Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes.	Genome Biol.	17	7	2016		
43074	26834778	Amin U.S., Biswas S., Elias S.M., Razzaque S., Haque T., Malo R., Seraj Z.I.	Enhanced Salt Tolerance Conferred by the Complete 2.3 kb cDNA of the Rice vacuolar Na(+)/H(+) antiporter gene Compared to 1.9 kb Coding Region with 5' UTR in Transgenic Lines of Rice.	Front Plant Sci	7	14	2016		
43075	26747130	Singh V., Singh P.K., Siddiqui A., Singh S., Banday Z.Z., Nandi A.K.	Over-expression of Arabidopsis thaliana SFD1/GLY1, the gene encoding plastid localized glycerol-3-phosphate dehydrogenase, increases plastidic lipid content in transgenic rice plants.	J. Plant Res.	129(2)	285-93	2016		
43076	26803790	Wang J., Fang Z., Cheng W., Yan X., Tsang P.E., Zhao D.	Higher concentrations of nanoscale zero-valent iron (nZVI) in soil induced rice chlorosis due to inhibited active iron transportation.	Environ. Pollut.	210	338-45	2016		
43077	27186024	Ganie S.A., Borgohain M.J., Kritika K., Talukdar A., Pani D.R., Mondal T.K.	Assessment of genetic diversity of Saltol QTL among the rice (Oryza sativa L.) genotypes.	Physiol Mol Biol Plants	22(1)	107-14	2016		
43078	26973685	Richa K., Tiwari I.M., Kumari M., Devanna B.N., Sonah H., Kumari A., Nagar R., Sharma V., Botella J.R., Sharma T.R.	Functional Characterization of Novel Chitinase Genes Present in the Sheath Blight Resistance QTL: qSBR11-1 in Rice Line Tetep.	Front Plant Sci	7	244	2016		
43079	27200064	Liu E., Liu Y., Wu G., Zeng S., Tran Thi TG., Liang L., Liang Y., Dong Z., She D., Wang H., Zaid I.U., Hong D.	Identification of a Candidate Gene for panicle length in Rice (Oryza sativa L.) Via Association and Linkage Analysis.	Front Plant Sci	7	596	2016		
43080	27116122	Wang F., Wang C., Liu P., Lei C., Hao W., Gao Y., Liu Y.G., Zhao K.	Enhanced Rice Blast Resistance by CRISPR/Cas9-Targeted Mutagenesis of the ERF Transcription Factor Gene OsERF922.	PLoS ONE	11(4)	e0154027	2016		
43081	26772883	Zhao J., Li M., Gu D., Liu X., Zhang J., Wu K., Zhang X., Teixeira da Silva JA., Duan J.	Involvement of rice histone deacetylase HDA705 in seed germination and in response to ABA and abiotic stresses.	Biochem. Biophys. Res. Commun.	470(2)	439-44	2016	NCED1,SD1,GA20OX3,D18,NCED3,NCED2,_	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsGA20ox3, ga20ox3,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OSNCED2, OsNCED2, OsNCED5, NCED5,HDA705
43082	26819544	Hsu Y.C., Wang C.S., Lin Y.R., Wu Y.P.	Structural Diversity of a Novel LTR Retrotransposon, RTPOSON, in the Genus Oryza.	Evol. Bioinform. Online	12	29-40	2016		
43083	27124767	Yin G., Whelan J., Wu S., Zhou J., Chen B., Chen X., Zhang J., He J., Xin X., Lu X.	Comprehensive Mitochondrial Metabolic Shift during the Critical Node of Seed Ageing in Rice.	PLoS ONE	11(4)	e0148013	2016		
43084	26799713	Fan W., Zong J., Luo Z., Chen M., Zhao X., Zhang D., Qi Y., Yuan Z.	Development of a RAD-seq Based DNA Polymorphism Identification Software, AgroMarker Finder, and Its Application in Rice Marker-Assisted Breeding.	PLoS ONE	11(1)	e0147187	2016		
43085	26955374	Yang L., Ji J., Harris-Shultz KR., Wang H., Wang H., Abd-Allah EF., Luo Y., Hu X.	The Dynamic Changes of the Plasma Membrane Proteins and the Protective Roles of Nitric Oxide in Rice Subjected to Heavy Metal Cadmium Stress.	Front Plant Sci	7	190	2016		
43086	26709785	Zhang L., Shen W., Fang Z., Liu B.	Cry1Ab/c in different stages of growth in transgenic rice Bt-shanyou63.	Front Biosci (Landmark Ed)	21	447-54	2016		
43087	26772971	Delteil A., Gobbato E., Cayrol B., Estevan J., Michel-Romiti C., Dievart A., Kroj T., Morel J.B.	Several wall-associated kinases participate positively and negatively in basal defense against rice blast fungus.	BMC Plant Biol.	16	17	2016		
43088	26781807	Qin X., Huang Q., Xiao H., Zhang Q., Ni C., Xu Y., Liu G., Yang D., Zhu Y., Hu J.	The rice DUF1620-containing and WD40-like repeat protein is required for the assembly of the restoration of fertility complex.	New Phytol.	210(3)	934-45	2016	_,RF1,_,_,_	orfH79, ORFH79,Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,RFC3,GRP162,atp6-orfH79
43089	26809609	Hein A., Polsakiewicz M., Knoop V.	Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors.	BMC Evol. Biol.	16	23	2016		
43090	27066033	Essemine J., Qu M., Mi H., Zhu X.G.	Response of Chloroplast NAD(P)H Dehydrogenase-Mediated Cyclic Electron Flow to a Shortage or Lack in Ferredoxin-Quinone Oxidoreductase-Dependent Pathway in Rice Following Short-Term Heat Stress.	Front Plant Sci	7	383	2016		
43091	26826218	Liu J.M., Park S.J., Huang J., Lee E.J., Xuan Y.H., Je B.I., Kumar V., Priatama R.A., Raj K V., Kim S.H., Min M.K., Cho J.H., Kim T.H., Chandran A.K., Jung K.H., Takatsuto S., Fujioka S., Han C.D.	Loose Plant Architecture1 (LPA1) determines lamina joint bending by suppressing auxin signalling that interacts with C-22-hydroxylated and 6-deoxo brassinosteroids in rice.	J. Exp. Bot.	67(6)	1883-95	2016		
43092	26787525	Hu Y., Guo L., Yang G., Qin P., Fan C., Peng Y., Yan W., He H., Li S.	[Genetic analysis of dense and erect panicle 2 allele DEP2-1388 and its application in hybrid rice breeding].	Yi Chuan	38(1)	72-81	2016		
43093	27116220	Nothstein A.K., Eiche E., Riemann M., Nick P., Winkel L.H., G?ttlicher J., Steininger R., Brendel R., von Brasch M., Konrad G., Neumann T.	Tracking Se Assimilation and Speciation through the Rice Plant - Nutrient Competition, Toxicity and Distribution.	PLoS ONE	11(4)	e0152081	2016		
43094	26733690	Che J., Yamaji N., Shao J.F., Ma J.F., Shen R.F.	Silicon decreases both uptake and root-to-shoot translocation of manganese in rice.	J. Exp. Bot.	67(5)	1535-44	2016		
43095	26766411	Ootsubo Y., Hibino T., Wakazono T., Mukai Y., Che F.S.	IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.	Biosci. Biotechnol. Biochem.	80(4)	748-60	2016	IREN	
43096	26839515	Chen X., Deng Z., Yu C., Yan C., Chen J.	Secretome analysis of rice suspension-cultured cells infected by Xanthomonas oryzae pv.oryza (Xoo).	Proteome Sci	14	2	2016		
43097	26779230	Adriani D.E., Lafarge T., Dardou A., Fabro A., Clement-Vidal A., Yahya S., Dingkuhn M., Luquet D.	The qTSN Positive Effect on Panicle and flag leaf Size of Rice is Associated with an Early Down-Regulation of Tillering.	Front Plant Sci	6	1197	2015		
43098	26834756	Mellacheruvu S., Tamirisa S., Vudem D.R., Khareedu V.R.	Pigeonpea Hybrid-Proline-Rich Protein (CcHyPRP) Confers Biotic and Abiotic Stress Tolerance in Transgenic Rice.	Front Plant Sci	6	1167	2015		
43099	26909941	Zhang Y.D., Zhu Z., Zhao Q.Y., Chen T., Yao S., Zhou L.H., Zhao L., Zhao C.F., Wang C.L.	Haplotypes of qGL3 and their roles in grain size.regulation with GS3 alleles in rice.	Genet. Mol. Res.	15(1)		2016		
43100	26841062	Cheng Y., Jiang Y., Wu Y., Valentine T.A., Li H.	Soil Nitrogen Status Modifies Rice Root Response to Nematode-Bacteria Interactions in the Rhizosphere.	PLoS ONE	11(2)	e0148021	2016		
43101	26751680	Du H.X., Xiao W.H., Wang Y., Zhou X., Zhang Y., Liu D., Yuan Y.J.	Engineering Yarrowia lipolytica for Campesterol Overproduction.	PLoS ONE	11(1)	e0146773	2016		
43102	27124300	Han Y., Li P., Gong S., Yang L., Wen L., Hou M.	Defense Responses in Rice Induced by Silicon Amendment against Infestation by the Leaf Folder Cnaphalocrocis medinalis.	PLoS ONE	11(4)	e0153918	2016		
43103	26764380	Mahrez W., Arellano M.S., Moreno-Romero J., Nakamura M., Shu H., Nanni P., K?hler C., Gruissem W., Hennig L.	H3K36ac Is an Evolutionary Conserved Plant Histone Modification That Marks Active Genes.	Plant Physiol.	170(3)	1566-77	2016		
43104	26910246	Mo Z., Huang J., Xiao D., Ashraf U., Duan M., Pan S., Tian H., Xiao L., Zhong K., Tang X.	Supplementation of 2-Ap, Zn and La Improves 2-Acetyl-1-Pyrroline Concentrations in Detached Aromatic Rice Panicles In Vitro.	PLoS ONE	11(2)	e0149523	2016		
43105	26755691	Urano D., Miura K., Wu Q., Iwasaki Y., Jackson D., Jones A.M.	Plant Morphology of Heterotrimeric G Protein Mutants.	Plant Cell Physiol.	57(3)	437-45	2016		
43106	26806528	Trijatmiko K.R., Due?as C., Tsakirpaloglou N., Torrizo L., Arines F.M., Adeva C., Balindong J., Oliva N., Sapasap M.V., Borrero J., Rey J., Francisco P., Nelson A., Nakanishi H., Lombi E., Tako E., Glahn R.P., Stangoulis J., Chadha-Mohanty P., Johnson A.A., Tohme J., Barry G., Slamet-Loedin IH.	Biofortified indica rice attains iron and zinc nutrition dietary targets in the field.	Sci Rep	6	19792	2016		
43107	26802561	Hu H., Wang L., Li Y., Sun J., Zhou Q., Huang X.	Insight into mechanism of lanthanum (III) induced damage to plant photosynthesis.	Ecotoxicol. Environ. Saf.	127	43-50	2016		
43108	26792976	Yang X., Wang J.	Genome-Wide Analysis of NBS-LRR Genes in Sorghum Genome Revealed Several Events Contributing to NBS-LRR Gene Evolution in Grass Species.	Evol. Bioinform. Online	12	9-21	2016		
43109	26904091	Jiang Y., Qiu Y., Hu Y., Yu D.	Heterologous Expression of AtWRKY57 Confers drought tolerance in Oryza sativa.	Front Plant Sci	7	145	2016		
43110	26826216	Talla S.K., Panigrahy M., Kappara S., Nirosha P., Neelamraju S., Ramanan R.	Cytokinin delays dark-induced senescence in rice by maintaining the chlorophyll cycle and photosynthetic complexes.	J. Exp. Bot.	67(6)	1839-51	2016		
43111	27010823	Zhou Y., Dong G., Tao Y., Chen C., Yang B., Wu Y., Yang Z., Liang G., Wang B., Wang Y.	Mapping Quantitative Trait Loci Associated with Toot Traits Using Sequencing-Based Genotyping Chromosome Segment Substitution Lines Derived from 9311 and Nipponbare in Rice (Oryza sativa L.).	PLoS ONE	11(3)	e0151796	2016		
43112	27065353	Wang S., Chang Y., Ellis B.	Overview of OVATE FAMILY PROTEINS, A Novel Class of Plant-Specific Growth Regulators.	Front Plant Sci	7	417	2016		
43113	27092157	Hussain S., Khan F., Cao W., Wu L., Geng M.	Seed Priming Alters the Production and Detoxification of Reactive Oxygen Intermediates in Rice Seedlings Grown under Sub-optimal Temperature and Nutrient Supply.	Front Plant Sci	7	439	2016		
43114	26791837	He H., Zhu S., Jiang Z., Ji Y., Wang F., Zhao R., Bie T.	Comparative mapping of powdery mildew resistance gene Pm21 and functional characterization of resistance-related genes in wheat.	Theor. Appl. Genet.	129(4)	819-29	2016		
43115	26727453	Salem K.F., Sallam A.	Analysis of population structure and genetic diversity of Egyptian and exotic rice (Oryza sativa L.) genotypes.	C. R. Biol.	339(1)	1-9	2016		
43116	27066031	Li M., Li X., Zhou Z., Wu P., Fang M., Pan X., Lin Q., Luo W., Wu G., Li H.	Reassessment of the Four Yield-related Genes Gn1a, DEP1, GS3, and IPA1 in Rice Using a CRISPR/Cas9 System.	Front Plant Sci	7	377	2016		
43117	26786911	Ariyarathna H.A., Oldach K.H., Francki M.G.	A comparative gene analysis with rice identified orthologous group II HKT genes and their association with Na(+) concentration in bread wheat.	BMC Plant Biol.	16	21	2016		
43118	27020034	Xie Q., Liang Y., Zhang J., Zheng H., Dong G., Qian Q., Zuo J.	Involvement of a Putative Bipartite Transit Peptide in Targeting Rice Pheophorbide a Oxygenase into Chloroplasts for Chlorophyll Degradation during leaf senescence.	J Genet Genomics	43(3)	145-54	2016		
43119	26824347	Ba?c? C., Allmer J.	One Step Forward, Two Steps Back; Xeno-MicroRNAs Reported in Breast Milk Are Artifacts.	PLoS ONE	11(1)	e0145065	2016		
43120	26799776	Pucciariello C., Perata P.	New insights into reactive oxygen species and nitric oxide signalling under low oxygen in plants.	Plant Cell Environ.			2016		
43121	26859143	Onogi A., Ideta O., Yoshioka T., Ebana K., Yamasaki M., Iwata H.	Uncovering a Nuisance Influence of a Phenological Trait of Plants Using a Nonlinear Structural Equation: Application to Days to heading and Culm Length in Asian Cultivated Rice (Oryza Sativa L.).	PLoS ONE	11(2)	e0148609	2016		
43122	26807986	Jing L., Dombinov V., Shen S., Wu Y., Yang L., Wang Y., Frei M.	Physiological and genotype-specific factors associated with grain quality changes in rice exposed to high ozone.	Environ. Pollut.	210	397-408	2016		
43123	26747287	Toyosawa Y., Kawagoe Y., Matsushima R., Crofts N., Ogawa M., Fukuda M., Kumamaru T., Okazaki Y., Kusano M., Saito K., Toyooka K., Sato M., Ai Y., Jane J.L., Nakamura Y., Fujita N.	Deficiency of starch synthase IIIa and IVb Alters Starch Granule Morphology from Polyhedral to Spherical in Rice Endosperm.	Plant Physiol.	170(3)	1255-70	2016		
43124	26930200	Baumbach J., Pudake R.N., Johnson C., Kleinhans K., Ollhoff A., Palmer R.G., Bhattacharyya M.K., Sandhu D.	Transposon Tagging of a Male-Sterility, Female-Sterility Gene, st8, Revealed that the Meiotic MER3 DNA helicase Activity Is Essential for Fertility in Soybean.	PLoS ONE	11(3)	e0150482	2016		
43125	26806409	Zhang K., Song Q., Wei Q., Wang C., Zhang L., Xu W., Su Z.	Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.	Plant Biotechnol. J.			2016		
43126	27092162	Krithika S., Balachandar D.	Expression of Zinc Transporter Genes in Rice as Influenced by Zinc-Solubilizing Enterobacter cloacae Strain ZSB14.	Front Plant Sci	7	446	2016		
43127	26754485	Jin J., Kong J., Qiu J., Zhu H., Peng Y., Jiang H.	High level of microsynteny and purifying selection affect the evolution of WRKY family in Gramineae.	Dev. Genes Evol.	226(1)	15-25	2016		
43128	27023243	Lung S.C., Chye M.L.	Acyl-CoA-Binding Proteins (ACBPs) in Plant Development.	Subcell. Biochem.	86	363-404	2016		
43129	26858735	Jangam A.P., Pathak R.R., Raghuram N.	Microarray Analysis of Rice d1 (RGA1) Mutant Reveals the Potential Role of G-Protein Alpha Subunit in Regulating Multiple Abiotic Stresses Such as Drought, Salinity, Heat, and Cold.	Front Plant Sci	7	11	2016		
43130	26566841	Dievart A., Perin C., Hirsch J., Bettembourg M., Lanau N., Artus F., Bureau C., Noel N., Droc G., Peyramard M., Pereira S., Courtois B., Morel J.B., Guiderdoni E.	The phenome analysis of mutant alleles in Leucine-Rich Repeat Receptor-Like Kinase genes in rice reveals new potential targets for stress tolerant cereals.	Plant Sci.	242	240-9	2016		
43131	26739616	Lu Y.C., Feng S.J., Zhang J.J., Luo F., Zhang S., Yang H.	Genome-wide identification of DNA methylation provides insights into the association of gene expression in rice exposed to pesticide atrazine.	Sci Rep	6	18985	2016		
43132	27045847	Asaf S., Khan A.L., Khan A.R., Waqas M., Kang S.M., Khan M.A., Shahzad R., Seo C.W., Shin J.H., Lee I.J.	Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species.	PLoS ONE	11(4)	e0152937	2016		
43133	26801786	Divya D., Singh Y.T., Nair S., Bentur J.S.	Analysis of SSH library of rice variety Aganni reveals candidate gall midge resistance genes.	Funct. Integr. Genomics	16(2)	153-69	2016		
43134	26891550	Mawlong I., Ali K., Tyagi A.	Cloning and characterization of a water deficit stress responsive transcription factor gene from Oryza sativa L.	Indian J. Exp. Biol.	54(1)	26-36	2016		
43135	26566845	Singh R., Singh Y., Xalaxo S., Verulkar S., Yadav N., Singh S., Singh N., Prasad K.S., Kondayya K., Rao P.V., Rani M.G., Anuradha T., Suraynarayana Y., Sharma P.C., Krishnamurthy S.L., Sharma S.K., Dwivedi J.L., Singh A.K., Singh P.K., Nilanjay, Singh N.K., Kumar R., Chetia S.K., Ahmad T., Rai M., Perraju P., Pande A., Singh D.N., Mandal N.P., Reddy J.N., Singh O.N., Katara J.L., Marandi B., Swain P., Sarkar R.K., Singh D.P., Mohapatra T., Padmawathi G., Ram T., Kathiresan R.M., Paramsivam K., Nadarajan S., Thirumeni S., Nagarajan M., Singh A.K., Vikram P., Kumar A., Septiningshih E., Singh U.S., Ismail A.M., Mackill D., Singh N.K.	From QTL to variety-harnessing the benefits of QTLs for drought, flood and salt tolerance in mega rice varieties of India through a multi-institutional network.	Plant Sci.	242	278-87	2016		
43136	26754957	Yi S.Y., Cui Y., Zhao Y., Liu Z.D., Lin Y.J., Zhou F.	A Novel Naturally Occurring Class I 5-Enolpyruvylshikimate-3-Phosphate Synthase from Janibacter sp. Confers High Glyphosate Tolerance to Rice.	Sci Rep	6	19104	2016		
43137	26799169	Lima-Melo Y., Carvalho F.E., Martins M.O., Passaia G., Sousa R.H., Neto M.C., Margis-Pinheiro M., Silveira J.A.	Mitochondrial GPX1 silencing triggers differential photosynthesis impairment in response to salinity in rice plants.	J Integr Plant Biol			2016	GPX1	OsGpx1, GPX1, OsGPx01, OsGPX1
43138	26914608	Zhou X., Guo Y., Kong H., Zuo J., Huang Q., Jia R., Guo A., Xu L.	A Comprehensive Assessment of the Effects of Transgenic Cry1Ac/Cry1Ab Rice Huahui 1 on Adult Micraspis discolor (Fabricius) (Coleoptera: Coccinellidae).	PLoS ONE	11(2)	e0142714	2016		
43139	26765864	Wei T., Chern M., Liu F., Ronald P.C.	Suppression of bacterial infection in rice by treatment with a sulfated peptide.	Mol. Plant Pathol.			2016		
43140	26851887	Garc?a AC., Santos L.A., de Souza LG., Tavares O.C., Zonta E., Gomes E.T., Garc?a-Mina JM., Berbara R.L.	Vermicompost humic acids modulate the accumulation and metabolism of ROS in rice plants.	J. Plant Physiol.	192	56-63	2016		
43141	27200025	Negi M., Sanagala R., Rai V., Jain A.	Deciphering Phosphate Deficiency-Mediated Temporal Effects on Different Root Traits in Rice Grown in a Modified Hydroponic System.	Front Plant Sci	7	550	2016		
43142	26768120	Sun Y., Zhang X., Wu C., He Y., Ma Y., Hou H., Guo X., Du W., Zhao Y., Xia L.	Engineering Herbicide-Resistant Rice Plants through CRISPR/Cas9-Mediated Homologous Recombination of Acetolactate Synthase.	Mol Plant	9(4)	628-31	2016		
43143	26830287	Zhang L., Xuan H., Zuo Y., Xu G., Wang P., Song Y., Zhang S.	Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network.	Funct. Integr. Genomics	16(3)	243-51	2016		
43144	26858569	Mohd Din AR., Iliyas Ahmad F., Wagiran A., Abd Samad A., Rahmat Z., Sarmidi M.R.	Improvement of efficient in vitro regeneration potential of mature callus induced from Malaysian upland rice seed (Oryza sativa cv. Panderas).	Saudi J Biol Sci	23(1)	S69-77	2016		
43145	26747044	Endo T., Chiba B., Wagatsuma K., Saeki K., Ando T., Shomura A., Mizubayashi T., Ueda T., Yamamoto T., Nishio T.	Detection of QTLs for cold tolerance of rice cultivar 'Kuchum' and effect of QTL pyramiding.	Theor. Appl. Genet.	129(3)	631-40	2016		
43146	26745604	Hirano K., Hino S., Oshima K., Nadano D., Urisu A., Takaiwa F., Matsuda T.	Evaluation of allergenic potential for rice seed protein components utilizing a rice proteome database and an allergen database in combination with IgE-binding of recombinant proteins.	Biosci. Biotechnol. Biochem.	80(3)	564-73	2016		
43147	26782108	Wang W., Chen Q., Hussain S., Mei J., Dong H., Peng S., Huang J., Cui K., Nie L.	Pre-sowing Seed Treatments in Direct-seeded Early Rice: Consequences for Emergence, Seedling Growth and Associated Metabolic Events under Chilling Stress.	Sci Rep	6	19637	2016		
43148	27077373	Tiwari S., Sl K., Kumar V., Singh B., Rao A.R., Mithra Sv A., Rai V., Singh A.K., Singh N.K.	Mapping QTLs for salt tolerance in Rice (Oryza sativa L.) by Bulked Segregant Analysis of Recombinant Inbred Lines Using 50K SNP Chip.	PLoS ONE	11(4)	e0153610	2016		
43149	26752408	Zhou Y., Yang P., Cui F., Zhang F., Luo X., Xie J.	Transcriptome Analysis of Salt Stress Responsiveness in the Seedlings of Dongxiang Wild Rice (Oryza rufipogon Griff.).	PLoS ONE	11(1)	e0146242	2016		
43150	27194103	Sun H., Bi Y., Tao J., Huang S., Hou M., Xue R., Liang Z., Gu P., Yoneyama K., Xie X., Shen Q., Xu G., Zhang Y.	Strigolactones are required for nitric oxide to induce root elongation in response to nitrogen and phosphate deficiencies in rice.	Plant Cell Environ.			2016		
43151	27200040	Hossain M.R., Bassel G.W., Pritchard J., Sharma G.P., Ford-Lloyd BV.	Trait Specific Expression Profiling of Salt Stress Responsive Genes in Diverse Rice Genotypes as Determined by Modified Significance Analysis of Microarrays.	Front Plant Sci	7	567	2016		
43152	26767346	He D., Wang Q., Li M., Damaris R.N., Yi X., Cheng Z., Yang P.	Global Proteome Analyses of Lysine Acetylation and Succinylation Reveal the Widespread Involvement of both Modification in Metabolism in the Embryo of Germinating Rice Seed.	J. Proteome Res.	15(3)	879-90	2016		
43153	26779218	Mehra P., Pandey B.K., Giri J.	Comparative Morphophysiological Analyses and Molecular Profiling Reveal Pi-Efficient Strategies of a Traditional Rice Genotype.	Front Plant Sci	6	1184	2015		
43154	26904078	Hussain S., Khan F., Hussain H.A., Nie L.	Physiological and Biochemical Mechanisms of Seed Priming-Induced Chilling Tolerance in Rice Cultivars.	Front Plant Sci	7	116	2016		
43155	26732290	Vasudevan K., Gruissem W., Bhullar N.K.	Corrigendum: Identification of novel alleles of the rice blast resistance gene Pi54.	Sci Rep	6	17920	2016		
43156	27186981	Wei F.J., Tsai Y.C., Hsu Y.M., Chen Y.A., Huang C.T., Wu H.P., Huang L.T., Lai M.H., Kuang L.Y., Lo S.F., Yu S.M., Lin Y.R., Hsing Y.I.	Lack of Genotype and Phenotype Correlation in a Rice T-DNA Tagged Line Is Likely Caused by Introgression in the Seed Source.	PLoS ONE	11(5)	e0155768	2016		
43157	26742102	Singh A., Gupta R., Pandey R.	Rice Seed Priming with Picomolar Rutin Enhances Rhizospheric Bacillus subtilis CIM Colonization and Plant Growth.	PLoS ONE	11(1)	e0146013	2016		
43158	27148335	Zhang H., Hu J., Qian Q., Chen H., Jin J., Ding Y.	Small RNA Profiles of the Rice PTGMS Line Wuxiang S Reveal miRNAs Involved in Fertility Transition.	Front Plant Sci	7	514	2016		
43159	26791836	Onogi A., Watanabe M., Mochizuki T., Hayashi T., Nakagawa H., Hasegawa T., Iwata H.	Toward integration of genomic selection with crop modelling: the development of an integrated approach to predicting rice heading dates.	Theor. Appl. Genet.	129(4)	805-17	2016		
43160	26799317	Yang J., Zhang F., Li J., Chen J.P., Zhang H.M.	Integrative Analysis of the microRNAome and Transcriptome Illuminates the Response of Susceptible Rice Plants to Rice Stripe Virus.	PLoS ONE	11(1)	e0146946	2016		
43161	26793232	Singh A.P., Dixit G., Kumar A., Mishra S., Singh P.K., Dwivedi S., Trivedi P.K., Chakrabarty D., Mallick S., Pandey V., Dhankher O.P., Tripathi R.D.	Nitric Oxide Alleviated Arsenic Toxicity by Modulation of Antioxidants and Thiol Metabolism in Rice (Oryza sativa L.).	Front Plant Sci	6	1272	2015		
43162	27018583	Vikram P., Swamy B.P., Dixit S., Trinidad J., Sta Cruz MT., Maturan P.C., Amante M., Kumar A.	Linkages and Interactions Analysis of Major Effect Drought grain yield QTLs in Rice.	PLoS ONE	11(3)	e0151532	2016		
43163	25825876	Iwata H., Ebana K., Uga Y., Hayashi T.	Genomic Prediction of Biological Shape: Elliptic Fourier Analysis and Kernel Partial Least Squares (PLS) Regression Applied to grain shape Prediction in Rice (Oryza sativa L.).	PLoS ONE	10(3)	e0120610	2015		
43164	15807780	Kawagoe Y., Kubo A., Satoh H., Takaiwa F., Nakamura Y.	Roles of isoamylase and ADP-glucose pyrophosphorylase in starch granule synthesis in rice endosperm.	Plant J.	42(2)	164-74	2005	ISA1,SUG,SHR1	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,sug(su), su, sug1, su1, su-1,shr1, sh1, shr
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43166	0	Ali,I. and Mahmood,T.	Identification and analysis of regulatory elements in the germin and germin-like proteins family promoters in rice	Turk J Botany  In press REMARK Publication Status: Available-Online prior to print			2015		
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43168	0	Divya,D., Himabindu,K., Nair,S. and Bentur,J.S.	Cloning of a gene encoding LRR protein and its validation as candidate gall midge resistance gene, Gm4, in rice	Euphytica	203	185-195	2015		
43169	26272331	Fraiture,M.A., Herman,P., Lefevre,L., Taverniers,I., De Loose,M., Deforce,D. and Roosens,N.H.	Integrated DNA walking system to characterize a broad spectrum of GMOs in food/feed matrices	BMC Biotechnol.	15	76	2015		
43170	26504677	Garaycochea,S., Speranza,P. and Alvarez-Valin,F.	A strategy to recover a high-quality, complete plastid sequence from low-coverage whole-genome sequencing	Appl Plant Sci	3(10)	1500022	2015		
43171	26362653	Guo,J., Liu,R., Huang,L., Zheng,X.M., Liu,P.L., Du,Y.S., Cai,Z., Zhou,L., Wei,X.H., Zhang,F.M. and Ge,S.	Widespread and adaptive alterations in genome-wide gene expression associated with ecological divergence of two Oryza species	Mol. Biol. Evol.			2015		
43172	0	Kophimai,Y., Cheenacharoen,S., Klayraung,S. and Sangtong,V.	Genetic differences between photoperiod-sensitive and non-photoperiod-sensitive Thai rice varieties	Thai J Genet	7(2)	97-103	2014		
43173	0	Kretzschmar,T., Pelayo,M.A.F., Trijatmiko,K.R., Gabunada,L.F., Alam,R., Jimenez,R., Mendioro,M.S., Slamet-Loedin,I.H., Sreenivasulu,N., Bailey-Serres,J., Ismail,A.M., Mackill,D.J. and Septiningsih,E.M.	A trehalose-6-phospate phosphatase enhances anaerobic germination tolerance in rice	Nat Plants			2015		
43174	0	Mi,Z., Wang,S. and Wu,N.	Molecular cloning of small GTP binding protein gene osRACD gene from rice	Chin. Sci. Bull.	45	2047-2054	2000		
43175	25740809	Ohtani,M., Takebayashi,A., Hiroyama,R., Xu,B., Kudo,T., Sakakibara,H., Sugiyama,M. and Demura,T.	Cell dedifferentiation and organogenesis in vitro require more snRNA than does seedling development in Arabidopsis thaliana	J. Plant Res.	128(3)	371-380	2015		
43176	0	Oomen,R., Benito,B., Sentenac,H., Rodriguez-Navarro,A., Talon,M., Very,A.A. and Domingo,C.	A new K+-permeable HKT transporter identified in a salt tolerant rice cultivar identified through surveys of natural genetic polymorphism	Plant J.	71(5)	150-162	2012		
43177	0	Roy,S.C.	DNA Barcoding for Wild Rice [Oryza rufipogon Griff.] of NBU Campus Based on matK gene and Assessment of Genetic Variation Using DREB and BAD2 Gene Sequences	Plant Gene Trait	6(5)	1-10	2015		
43178	25479011	Sahebi,M., Hanafi,M.M., Siti Nor Akmar,A., Rafii,M.Y., Azizi,P. and Idris,A.S.	Serine-rich protein is a novel positive regulator for silicon accumulation in mangrove	Gene	556(2)	170-181	2015		
43179	0	Singh,B.P., Singh,B., Kumar,V., Kumar Singh,P., Jayaswal,P.K., Mishra,S. and Singh,N.K.	Haplotype diversity and association analysis of SNAC1 gene in wild rice germplasm	Indian J Genet Plant Breed	75(2)	157-166	2015		
43180	0	Spalinskas,R., Van den Bulcke,M. and Milcamps,A.	Efficient retrieval of recombinant sequences of GM plants by Cauliflower Mosaic Virus 35S promoter-based bidirectional LT-RADE	Eur. Food Res. Technol.	237	1025-1031	2013		
43181	0	Spalinskas,R., Van den Bulcke,M., Van den Eede,G. and Milcamps,A.	LT-RADE: an efficient user-friendly genome walking method applied to the molecular characterization of the insertion site of genetically modified maize MON810 and rice LLRICE62	Food Anal Methods	6	705-713	2013		
43182	26355750	Wambugu,P.W., Brozynska,M., Furtado,A., Waters,D.L. and Henry,R.J.	Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences	Sci Rep	5	13957	2015		
43183	0	Wang,Y., Xiong,G., Hu,J., Jiang,L., Yu,H., Xu,J., Fang,Y., Zeng,L., Xu,E., Xu,J., Ye,W., Meng,X., Jing,Y., Liu,R., Chen,H., Wang,Y., Zhu,X., Li,J. and Qian,Q.	Copy number variation at GL7 locus confers grain size diversity in rice	Nat. Genet.			2015		
43184	0	Xing,S.L., Liu,Y., Hu,X.W., Yao,Y.L. and Xu,L.	Cloning and characterization of catalase gene in upland rice	Guangdong Nong Ye Ke Xue			2015		
43185	25865498	Xu,C., Dong,W., Shi,S., Cheng,T., Li,C., Liu,Y., Wu,P., Wu,H., Gao,P. and Zhou,S.	Accelerating plant DNA barcode reference library construction using herbarium specimens: improved experimental techniques	Mol Ecol Resour			2015		
43186	22783877	Zhang,N., Zeng,L., Shan,H. and Ma,H.	Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms	New Phytol.	195(4)	923-937	2012		
43187	26460928	Zou,X.H., Du,Y.S., Tang,L., Xu,X.W., Doyle,J.J., Sang,T. and Ge,S.	Multiple origins of BBCC allopolyploid species in the rice genus (Oryza)	Sci Rep	5	14876	2015		
43188	24185596	Matsuoka M., Tamaoki M., Tada Y., Fuyjimura T., Tagiri A., Yamamoto N., Kano-Murakami Y.	Expression of rice OSH1 gene is localized in developing vascular strands and its ectopic expression in transgenic rice causes altered morphology of leaf.	Plant Cell Rep.	14(9)	555-9	1995		
43189	26601214	Ke J., Ma H., Gu X., Thelen A., Brunzelle J.S., Li J., Xu H.E., Melcher K.	Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors.	Sci Adv	1(6)	e1500107	2015		
43190	27176732	Chern M., Xu Q., Bart R.S., Bai W., Ruan D., Sze-To WH., Canlas P.E., Jain R., Chen X., Ronald P.C.	A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.	PLoS Genet.	12(5)	e1006049	2016		
43191	25747041	Kobayashi W., Sekine S., Machida S., Kurumizaka H.	Green fluorescent protein fused to the C terminus of RAD51 specifically interferes with secondary DNA binding by the RAD51-ssDNA complex.	Genes Genet. Syst.	89(4)	169-79	2014		
43192	26118128	Chittela R.K., Melzer M., Sainis J.K.	Comparison of activity of OsDmc1A recombinase of rice (Oryza sativa) in presence of Ca2+ and Mg2+ ions.	Indian J. Biochem. Biophys.	52(2)	161-8	2015		
43193	26734051	Luo S., Li Q., Liu S., Pinas N.M., Tian H., Wang S.	Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.	Front Plant Sci	6	1156	2015		
43194	25482803	Bitterlich M., Kr?gel U., Boldt-Burisch K., Franken P., K?hn C.	Interaction of brassinosteroid functions and sucrose transporter SlSUT2 regulate the formation of arbuscular mycorrhiza.	Plant Signal Behav	9(10)	e970426	2014		
43195	27208292	Zang G., Zou H., Zhang Y., Xiang Z., Huang J., Luo L., Wang C., Lei K., Li X., Song D., Din A.U., Wang G.	The De-Etiolated 1 Homolog of Arabidopsis Modulates the ABA Signaling Pathway and ABA Biosynthesis in Rice.	Plant Physiol.	171(2)	1259-76	2016		
43196	27193392	Su J., Zou X., Huang L., Bai T., Liu S., Yuan M., Chou S.H., He Y.W., Wang H., He J.	DgcA, a diguanylate cyclase from Xanthomonas oryzae pv. oryzae regulates bacterial pathogenicity on rice.	Sci Rep	6	25978	2016		
43197	24675172	Kim H.J., Kieber J.J., Schaller G.E.	The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.	Plant Signal Behav	8(12)	e26434	2013		
43198	19505461	Pil Joong Chung, Youn Shic Kim, Su-Hyun Park, Baek Hie Nahm, Ju-Kon Kim	Subcellular localization of rice histone deacetylases in organelles.	FEBS Lett.	583(13)	2249-54	2009	_	Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2
43199	19704731	Iuchi S., Kobayashi Y., Koyama H., Kobayashi M.	STOP1, a Cys2/His2 type zinc-finger protein, plays critical role in acid soil tolerance in Arabidopsis.	Plant Signal Behav	3(2)	128-30	2008		
43200	19704569	Bashir K., Nishizawa N.K.	deoxymugineic acid synthase: a gene important for fe-acquisition and homeostasis.	Plant Signal Behav	1(6)	290-2	2006		
43201	21150304	Kishi-Kaboshi M., Takahashi A., Hirochika H.	MAMP-responsive MAPK cascades regulate phytoalexin biosynthesis.	Plant Signal Behav	5(12)	1653-6	2010		
43202	19528530	Wakasa Y., Yang L., Hirose S., Takaiwa F.	Expression of unprocessed glutelin precursor alters polymerization without affecting trafficking and accumulation.	J. Exp. Bot.	60(12)	3503-11	2009		
43203	16897471	Yoshida H., Wang K.L., Chang C.M., Mori K., Uchida E., Ecker J.R.	The ACC synthase TOE sequence is required for interaction with ETO1 family proteins and destabilization of target proteins.	Plant Mol. Biol.	62(3)	427-37	2006		
43204	21051956	Sato K., Ito S., Fujii T., Suzuki R., Takenouchi S., Nakaba S., Funada R., Sano Y., Kajita S., Kitano H., Katayama Y.	The carbohydrate-binding module (CBM)-like sequence is crucial for rice CWA1/bc1 function in proper assembly of secondary cell wall materials.	Plant Signal Behav	5(11)	1433-6	2010		
43205	18316317	Taniguchi Y., Ohkawa H., Masumoto C., Fukuda T., Tamai T., Lee K., Sudoh S., Tsuchida H., Sasaki H., Fukayama H., Miyao M.	Overproduction of C4 photosynthetic enzymes in transgenic rice plants: an approach to introduce the C4-like photosynthetic pathway into rice.	J. Exp. Bot.	59(7)	1799-809	2008		
43206	16233652	Takahashi T., Furukawa A., Hara S., Mizoguchi H.	Isolation and characterization of sake yeast mutants deficient in gamma-aminobutyric acid utilization in sake brewing.	J. Biosci. Bioeng.	97(6)	412-8	2004		
43207	17147638	Mitsuda N., Hiratsu K., Todaka D., Nakashima K., Yamaguchi-Shinozaki K., Ohme-Takagi M.	Efficient production of male and female sterile plants by expression of a chimeric repressor in Arabidopsis and rice.	Plant Biotechnol. J.	4(3)	325-32	2006		
43208	8665098	H Inada, K Kusumi, M Nishimura, K Iba	Specific expression of the chloroplast gene for RNA polymerase (rpoB) at an early stage of leaf development in rice.	Plant Cell Physiol.	37(2)	229-32	1996	RPOB	rpoB, RpoB, Rpobeta
43209	27182946	Yu Y., Zhao Z., Shi Y., Tian H., Liu L., Bian X., Xu Y., Zheng X., Gan L., Shen Y., Wang C., Yu X., Wang C., Zhang X., Guo X., Wang J., Ikehashi H., Jiang L., Wan J.	hybrid sterility in Rice (Oryza sativa L.) Involves the Tetratricopeptide Repeat Domain Containing Protein.	Genetics	203(3)	1439-51	2016	S7	S7
43210	27322545	Yano K., Yamamoto E., Aya K., Takeuchi H., Lo P.C., Hu L., Yamasaki M., Yoshida S., Kitano H., Hirano K., Matsuoka M.	Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.	Nat. Genet.	48(8)	927-34	2016	NAL1,_,HD6,GATA28,HD2,SE1,RAE2 	nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4,,Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha,OsGATA28,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2
43211	27354554	Peng M., Gao Y., Chen W., Wang W., Shen S., Shi J., Wang C., Zhang Y., Zou L., Wang S., Wan J., Liu X., Gong L., Luo J.	Evolutionarily Distinct BAHD N-Acyltransferases Are Responsible for Natural Variation of Aromatic Amine Conjugates in Rice.	Plant Cell	28(7)	1533-50	2016	HCT3,AHT1,PHT2,PHT3,TBT2,TBT1,THT1,THT2	OsHCT3, Os-PHT1, OsPHT1, PHT1,Os-AHT1, OsAHT1,Os-PHT2, OsPHT2,Os-PHT3, OsPHT3,Os-TBT2, OsTBT2,Os-TBT1, OsTBT1,Os-THT1, OsTHT1,Os-THT2, OsTHT2
43212	27243642	Walter T., Wijewardena D., Walker K.D.	Mutation of Aryl Binding Pocket Residues Results in an Unexpected Activity Switch in an Oryza sativa Tyrosine Aminomutase.	Biochemistry	55(25)	3497-503	2016	_	OsPAL03, OsPAL9, TAM1, OsTAM1, TAM, OsTAM
43213	27274069	Fan X., Tang Z., Tan Y., Zhang Y., Luo B., Yang M., Lian X., Shen Q., Miller A.J., Xu G.	Overexpression of a pH-sensitive nitrate transporter in rice increases crop yields.	Proc. Natl. Acad. Sci. U.S.A.	113(26)	7118-23	2016	NRT2.3	OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 
43214	27307441	Schiml S., Fauser F., Puchta H.	Repair of adjacent single-strand breaks is often accompanied by the formation of tandem sequence duplications in plant genomes.	Proc. Natl. Acad. Sci. U.S.A.	113(26)	7266-71	2016		
43215	27436711	He Y., Wang C., Higgins J.D., Yu J., Zong J., Lu P., Zhang D., Liang W.	MEIOTIC F-BOX Is Essential for Male Meiotic DNA Double-Strand Break Repair in Rice.	Plant Cell	28(8)	1879-93	2016	_,COM1,RAD51C,_	OsFbox217, Os_F0121, MOF, OsMOF,OsCOM1,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OSK1, SKP1, OsSKP1
43216	27466405	Bessho-Uehara K., Wang D.R., Furuta T., Minami A., Nagai K., Gamuyao R., Asano K., Angeles-Shim RB., Shimizu Y., Ayano M., Komeda N., Doi K., Miura K., Toda Y., Kinoshita T., Okuda S., Higashiyama T., Nomoto M., Tada Y., Shinohara H., Matsubayashi Y., Greenberg A., Wu J., Yasui H., Yoshimura A., Mori H., McCouch S.R., Ashikari M.	Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.	Proc. Natl. Acad. Sci. U.S.A.	113(32)	8969-74	2016	AN1,RAE3,_,RAE2 	An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1,,OsSub2, SUB2, SLP1, OsSLP1,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2
43217	27452121	Wang J., Peng Y.D., He C., Wei B.Y., Liang Y.S., Yang H.L., Wang Z., Stanley D., Song Q.S.	Cry1Ab-expressing rice did not influence expression of fecundity-related genes in the wolf spider Pardosa pseudoannulata.	Gene			2016		
43218	27465023	Nagano M., Ishikawa T., Fujiwara M., Fukao Y., Kawano Y., Kawai-Yamada M., Shimamoto K.	Plasma Membrane Microdomains Are Essential for Rac1-RbohB/H-Mediated Immunity in Rice.	Plant Cell	28(8)	1966-83	2016	FAH1,RBOHB,RAC1,FAH2,RBOHH	Os-FAH1, OsFAH1,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,Os-FAH2, OsFAH2,rbohH, OsrbohH, Os rbohH, OsNox9, OsRboh9, Os-RbohH, RbohH 
43219	27468891	Tang N., Ma S., Zong W., Yang N., Lv Y., Yan C., Guo Z., Li J., Li X., Xiang Y., Song H., Xiao J., Li X., Xiong L.	MODD mediates deactivation and degradation of OsbZIP46 to negatively regulate ABA signaling and drought resistance in rice.	Plant Cell			2016	BZIP72,RLCK197,LEA3-1,HDAC1,WSI18,_,RAB16B,_,SAPK9,BZIP46,BZIP23,RAB16A	OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,OsPUB70, PUB70, OsRLCK197,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,OsWD40-66, TPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2,rab21, OsLEA28, OsRAB16D, OsRAB16b,MODD ,OsSAPK9,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A
43220	27535938	Zhang J., Chen L.L., Xing F., Kudrna D.A., Yao W., Copetti D., Mu T., Li W., Song J.M., Xie W., Lee S., Talag J., Shao L., An Y., Zhang C.L., Ouyang Y., Sun S., Jiao W.B., Lv F., Du B., Luo M., Maldonado C.E., Goicoechea J.L., Xiong L., Wu C., Xing Y., Zhou D.X., Yu S., Zhao Y., Wang G., Yu Y., Luo Y., Zhou Z.W., Hurtado B.E., Danowitz A., Wing R.A., Zhang Q.	Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.	Proc. Natl. Acad. Sci. U.S.A.	113(35)	E5163-71	2016		
43221	27500524	Meyer R.S., Choi J.Y., Sanches M., Plessis A., Flowers J.M., Amas J., Dorph K., Barretto A., Gross B., Fuller D.Q., Bimpong I.K., Ndjiondjop M.N., Hazzouri K.M., Gregorio G.B., Purugganan M.D.	Domestication history and geographical adaptation inferred from a SNP map of African rice.	Nat. Genet.	48(9)	1083-8	2016	HAK6,HAK5	OsHAK6, OsSTA42,OsHAK5, FCO13, OsFCO13
43222	27258572	Islam F., Ali B., Wang J., Farooq M.A., Gill R.A., Ali S., Wang D., Zhou W.	Combined herbicide and saline stress differentially modulates hormonal regulation and antioxidant defense system in Oryza sativa cultivars.	Plant Physiol. Biochem.	107	82-95	2016		
43223	27133784	Huang X., Lu Z., Wang X., Ouyang Y., Chen W., Xie K., Wang D., Luo M., Luo J., Yao J.	Imprinted gene OsFIE1 modulates rice seed development by influencing nutrient metabolism and modifying genome H3K27me3.	Plant J.			2016	FIE1,_,IEZ1,EMF2B,CLF,GLB1,_,GLUA1,_,GLUP4,_,_,FIE2,_	OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsLTPG10, OsLTPg10, LTPL83 ,OsiEZ1, OsSET1, SET1, iEZ1, OsEZ1/OsiEZ1, OsEZ1, EZ1, ez1, OsSET15, SDG718,OsEMF2b, EMF2b,OsSET24, SDG711, EZ1, OsCLF,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,OsLTPG2, OsLTPg2, LTPL82,Prol-17, OsEnS-88, pro16.2, PROLM24,OsFIE2, FIE, OsWD40-153,Prol-14, pro13b.21, PROLM17
43224	27103216	Huang W.K., Ji H.L., Gheysen G., Kyndt T.	Thiamine-induced priming against root-knot nematode infection in rice involves lignification and hydrogen peroxide generation.	Mol. Plant Pathol.	17(4)	614-24	2016	_,PAL1,CAD6,GSL1,RBOHB,WRKY45	C4H2, OsC4H, OsC4HL, C4H,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsCAD6,OsGSL1,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,OsWRKY45
43225	27185545	Jiang G., Yin D., Zhao J., Chen H., Guo L., Zhu L., Zhai W.	The rice thylakoid membrane-bound ascorbate peroxidase OsAPX8 functions in tolerance to bacterial blight.	Sci Rep	6	26104	2016	XA13,SODA1,CATA,2CYSPRXB,CDPK12,APX6,APX8,APX4,APX2,CATC	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,Os2-Cys PrxB, 2-Cys PrxB,OsCDPK12, OsCPK12, CPK12,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3
43226	27297988	Zhang Z., Cheng Z.J., Gan L., Zhang H., Wu F.Q., Lin Q.B., Wang J.L., Wang J., Guo X.P., Zhang X., Zhao Z.C., Lei C.L., Zhu S.S., Wang C.M., Wan J.M.	OsHSD1, a hydroxysteroid dehydrogenase, is involved in cuticle formation and lipid homeostasis in rice.	Plant Sci.	249	35-45	2016	DRP7	drp7, OsHSD1, LGF1, HSD1
43227	27335352	Uji Y., Taniguchi S., Tamaoki D., Shishido H., Akimitsu K., Gomi K.	Overexpression of OsMYC2 Results in the Up-Regulation of Early JA-Rresponsive Genes and Bacterial Blight Resistance in Rice.	Plant Cell Physiol.			2016	TIFY11B,_,GA2OX1,TIFY10C	OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsbHLH009, bHLH009, OsMYC2, MYC2,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8
43228	26829663	Ghosh T., Rai M., Tyagi W., Challam C.	Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.	Plant Signal Behav	11(5)	e1138192	2016	_,NAC3,NAC5,NAC6	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsNAC3, NAC67, ONAC067, OnNAC3*, OsNAC3/ONAC067,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
43229	27303902	Harada K., Yamashita E., Inoue K., Yamaguchi K., Fujiwara T., Nakagawa A., Kawasaki T., Kojima C.	Plant-specific DUF1110 protein from Oryza sativa: expression, purification and crystallization.	Acta Crystallogr F Struct Biol Commun	72(Pt 6)	480-4	2016	_,_,_	,PBI1, OsPBI1,
43230	27214086	Das N., Bhattacharya S., Maiti M.K.	Enhanced cadmium accumulation and tolerance in transgenic tobacco overexpressing rice metal tolerance protein gene OsMTP1 is promising for phytoremediation.	Plant Physiol. Biochem.	105	297-309	2016		
43231	27238968	Liu S., Wang J., Han Z., Gong X., Zhang H., Chai J.	Molecular Mechanism for Fungal Cell Wall Recognition by rice chitin receptor OsCEBiP.	Structure	24(7)	1192-200	2016	CEBiP	CEBIP, Os-LYP1, LYP1, OsCEBiP
43232	27208249	Tan F., Zhou C., Zhou Q., Zhou S., Yang W., Zhao Y., Li G., Zhou D.X.	Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways.	Plant Physiol.	171(3)	2041-54	2016	_,_,DRM2	OsDDM1b, DDM1b, DDM1,OsDDM1a, DDM1a,OsDRM2, osdrm2, DRM2-1
43233	27228336	Jeong K., Baten A., Waters D.L., Pantoja O., Julia C.C., Wissuwa M., Heuer S., Kretzschmar T., Rose T.J.	Phosphorus remobilization from rice flag leaves during grain filling: an RNA-seq study.	Plant Biotechnol. J.			2016	_,PAP26,CAX1A,PHO1;1,PT19,PAP1D,PHF1,PLDzeta1,PAP9B,_,_,PT16,RNS4,_,PT5,PT14,PAP3C,PAP10A,PT22,PLDzeta2,LTN1,PT20,_,PT8	OsSPX2, SPX2,OsPAP26,OsCAX1a, CAX1a, CAX1, OsCAX1, OsNCX2, OsNCX2.1, OsNCX2.2, NCX2, OsVCAX1a,OsPHO1;1,OsPT19,OsPAP1d, NPP5, OsNPP5,OsPHF1, OsWD40-137, OsSEC12,OsPLDzeta1, OsPLDrho1 ,OsPAP9b,OsSPX-MFS2, SPX-MFS2 ,OsSQD2, SQD2, SQD2.2, OsSQD2.2,OsPT16,OsRNS4, OsRRP, RNaseDIS,OsSPX-MFS1, SPX-MFS1,OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsPT14,OsPAP3c,OsPAP10a, PAP10,OsPT22,OsPLDzeta2, OsPLDrho2,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSTA235, OsPT20,OsSPX1, SPX1,OsPT8, PHT1-8, OsPht1;8, Pht1;8
43234	27208278	Yang L., Qian X., Chen M., Fei Q., Meyers B.C., Liang W., Zhang D.	Regulatory Role of a Receptor-Like Kinase in Specifying Anther Cell Identity.	Plant Physiol.	171(3)	2085-100	2016	MSP1,BZIP74,MIL1 ,GRX6,_	Msp1, OsMSP1,OsbZIP74, OsTGA10, TGA10 ,MIL1, mil1,OsGRX6, OsGrx_I1, Grx_I1,OsTDL1A, TDL1A, MIL2, OsTDL1A/MIL2, OsTDL1a 
43235	27143046	Kobayashi T., Itai R.N., Senoura T., Oikawa T., Ishimaru Y., Ueda M., Nakanishi H., Nishizawa N.K.	Jasmonate signaling is activated in the very early stages of iron deficiency responses in rice roots.	Plant Mol. Biol.	91(4-5)	533-47	2016	AOC,_,IDEF1,DMAS1,_,NAS2,AOS2,RMC,SIP2,_,AOS1,RBBI3-1,NAS1,_,TOM1,_,YSL2,_,_,LOX8,_,_	OsAOC, AOC1, OsAOC1, HB, CPM2, IBP1.2,OsLFL2, LFL2, OsIDEF1,OsDMAS1,OsHRZ1, HRZ1,OsNAS2,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsRMC, OsRLK, OsDUF26, DUF26,Sip2, OsARD1, ARD1, OsIDI1, IDI1, OsIDI1L/OsARD1,OsDAD1;4, DAD1;4,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4,OsNAS1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsTOM1, ZIFL4, OsZIFL4 ,OsDAD1;3, DAD1;3,OsYSL2, Os-YSL2, OsYs6 ,OsDAD1;2, DAD1;2,OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2,OsRFPH2-24, OsHRZ2, HRZ2,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1
43236	27302336	Che J., Yamaji N., Shen R.F., Ma J.F.	An Al-inducible expansin gene, OsEXPA10 is involved in root cell elongation of rice.	Plant J.			2016	EXPA25,ART1,EXPA10,EXPA20,EXPA18,EXPA29,EXPB1B	OsEXPA25, OsEXP25, osaEXPa1.6,ART1, STAR3,OsEXPA10, OsEXP10, osaEXPa1.28,OsEXPA20, OsEXP20, osaEXPa1.1,OsEXPA18, OsEXP18, osaEXPa1.3,OsEXPA29,OsEXPB1, EXPB1b, OsaEXPb1.3, Ory s I, EXPB1.1
43237	27350219	Yuan N., Yuan S., Li Z., Li D., Hu Q., Luo H.	Heterologous expression of a rice miR395 gene in Nicotiana tabacum impairs sulfate homeostasis.	Sci Rep	6	28791	2016	SULTR3;4,_,SULTR2;1,SULTR2;2,MIR395H	OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT,OsATPS, ATPS, OsaATPS, PAPSS,OsSultr2;1, OsSul2;1, OsaSULTR2, SULTR2,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1,OsmiR395h, miR395h, osa-MIR395h, OsamiR395h 
43238	27258121	Huang L.F., Lin K.H., He S.L., Chen J.L., Jiang J.Z., Chen B.H., Hou Y.S., Chen R.S., Hong C.Y., Ho S.L.	Multiple Patterns of Regulation and Overexpression of a Ribonuclease-Like Pathogenesis-Related Protein Gene, OsPR10a, Conferring disease resistance in Rice and Arabidopsis.	PLoS ONE	11(6)	e0156414	2016	PR10A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
43239	27306456	Hwang S.T., Choi D.	A novel rice protein family of OsHIGDs may be involved in early signalling of hypoxia-promoted stem growth in deepwater rice.	Plant Cell Rep.			2016	_,_,_,_,ADH1,_,_,_,PDC2	OsHIGD3, HIGD3,ATL3I, OsHIGD1, HIGD1 ,OsMSRB1, MSRB1, OsMSRB1.1, OsMSRB1.2, MSRB1.1,OsHIGD5, HIGD5,Adh1, Adh1/2, adh1/adh2, OsADH1,OsHIGD2, HIGD2,OsHIGD4, HIGD4,,pdc2*, pdc2
43240	27265035	Liu F., Zhang L., Luo Y., Xu M., Fan Y., Wang L.	Interactions of Oryza sativa OsCONTINUOUS VASCULAR RING-LIKE 1 (OsCOLE1) and OsCOLE1-INTERACTING PROTEIN reveal a novel intracellular auxin transport mechanism.	New Phytol.	212(1)	96-107	2016	_,_	OsCLIP, CLIP  ,OsCOLE1, COLE1 
43241	27171233	Cho S.H., Paek N.C.	Regulatory role of the OsWOX3A transcription factor in rice root development.	Plant Signal Behav	11(6)	e1184807	2016	NAL2,KAO,PIN1C,PIN1B	nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
43242	27258066	Li C., Zou X., Zhang C., Shao Q., Liu J., Liu B., Li H., Zhao T.	OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.	PLoS ONE	11(6)	e0156413	2016	CRL1L3,CRL1L1,CRL1,GO,DH1	OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2,OsCrll1, OsLBD3-1, LBD3-1,crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16
43243	27300023	Hwang S.H., Kwon S.I., Jang J.Y., Fang I.L., Lee H., Choi C., Park S., Ahn I., Bae S.C., Hwang D.J.	OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.	Plant Cell Rep.	35(9)	1975-85	2016	WRKY51,PR10A,_	OsWRKY51,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR2, PR2, OsGlu1, Glu1
43244	27325665	Zong W., Tang N., Yang J., Peng L., Ma S., Xu Y., Li G., Xiong L.	Feedback Regulation of ABA Signaling and Biosynthesis by a bZIP Transcription Factor Targets Drought-Resistance-Related Genes.	Plant Physiol.	171(4)	2810-25	2016	NCED3,BZIP23,SAPK2,_	OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsSAPK2,OsPP2C49, PP2C49, OsPP76
43245	27300553	Subburaj S., Cao S., Xia X., He Z.	Phylogenetic Analysis, Lineage-Specific Expansion and Functional Divergence of seed dormancy 4-Like Genes in Plants.	PLoS ONE	11(6)	e0153717	2016	SDR4	Sdr4, OsSdr4, OsSdr4-n, OsSdr4-k, OsSdr4L, Sdr4L 
43246	27379617	Bonifacio A., Carvalho F.E., Martins M.O., Lima Neto MC., Cunha J.R., Ribeiro C.W., Margis-Pinheiro M., Silveira J.A.	Silenced rice in both cytosolic ascorbate peroxidases displays pre-acclimation to cope with oxidative stress induced by 3-aminotriazole-inhibited catalase.	J. Plant Physiol.	201	17-27	2016	APX8,GPX5,PHGPX,APX2,GPX1,APX7,APX1,GPX3	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsGpx5, GPX5, OsGPx05,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsGpx1, GPX1, OsGPx01, OsGPX1,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsGpx3, GPX3, OsGPx03
43247	27332964	Yang C., Shen W., He Y., Tian Z., Li J.	OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	PLoS Genet.	12(6)	e1006118	2016	D2,_,BZR1,_	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,OsBZR1, Os BZR1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 
43248	27339321	Hu T., Zhou N., Fu M., Qin J., Huang X.	Characterization of OsLEA1a and its inhibitory effect on the resistance of E. coli to diverse abiotic stresses.	Int. J. Biol. Macromol.	91	1010-7	2016		
43249	27375203	Zhang G., Song X., Guo H., Wu Y., Chen X., Fang R.	A Small G Protein as a Novel Component of the Rice Brassinosteroid Signal Transduction.	Mol Plant			2016	D61,BZR1,_,_	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsBZR1, Os BZR1,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsRab11F1, OsPRA2, PRA2, OsPra2 
43250	27257291	Yang A., Zhang W.H.	A Small GTPase, OsRab6a, is Involved in the Regulation of Iron Homeostasis in Rice.	Plant Cell Physiol.	57(6)	1271-80	2016	_,IRT1,NAS1,NAS2,_	OsRab6B2, Rab6B2, OsRab6a, Rab6a,OsIRT1,OsNAS1,OsNAS2,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
43251	27457997	Zhang F., Zhang P., Zhang Y., Wang S., Qu L., Liu X., Luo J.	Identification of a peroxisomal-targeted aldolase involved in chlorophyll biosynthesis and sugar metabolism in rice.	Plant Sci.	250	205-15	2016	YGDL1	OsAld-Y, Ald-Y, YGDL-1 
43252	27303811	Wang F., Coe R.A., Karki S., Wanchana S., Thakur V., Henry A., Lin H.C., Huang J., Peng S., Quick W.P.	Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.).	PLoS ONE	11(6)	e0157244	2016	SAP16	OsSAP16
43253	27457985	Mishra R.C., Richa, Grover A.	Constitutive over-expression of rice ClpD1 protein enhances tolerance to salt and desiccation stresses in transgenic Arabidopsis plants.	Plant Sci.	250	69-78	2016	CLPD2,ERD1	ClpD2, OsClpD2 ,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 
43254	27251327	Cen H., Ye W., Liu Y., Li D., Wang K., Zhang W.	Overexpression of a Chimeric Gene, OsDST-SRDX, Improved salt tolerance of Perennial Ryegrass.	Sci Rep	6	27320	2016	DST	OsDST
43255	27342307	Tripathi A.K., Pareek A., Singla-Pareek SL.	A NAP-Family Histone Chaperone Functions in Abiotic Stress Response and Adaptation.	Plant Physiol.	171(4)	2854-68	2016	_,DREB1B,DMC1A	OsNAPL6, NAPL6,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51
43256	27313586	Verma P.K., Verma S., Pande V., Mallick S., Deo Tripathi R., Dhankher O.P., Chakrabarty D.	Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Front Plant Sci	7	740	2016	GRX4,GRX9	OsGRX4, OsGrx_C7, Grx_C7,OsGRX9, OsGrx_C2.1, Grx_C2.1 
43257	27446153	Kushwaha H.R., Joshi R., Pareek A., Singla-Pareek SL.	MATH-Domain Family Shows Response toward Abiotic Stress in Arabidopsis and Rice.	Front Plant Sci	7	923	2016	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsM9, M9, OsM9a ,OsMB13, MB13,OsMB37, MB37,OsMB29, MB29,OsMB36, MB36,OsMB38, MB38,OsMB26, MB26,OsMB1, MB1 ,OsMB31, MB31,OsMB2, MB2,OsMB8, MB8,OsMB51, MB51,OsM1, M1, OsM1a, OsM1b OsM1c,OsM7, M7, OsM7a ,OsMB33, MB33,OsMB39, MB39,OsM4, M4, OsM4a ,OsMB28, MB28,OsMB6, MB6,OsMB10, MB10, OsMB10a, OsMB10b,Os2M2B1, 2M2B1 ,Os2M1, 2M1,OsMB7, MB7,OsMB21, MB21,OsMB44, MB44,OsMB24, MB24,OsMB11, MB11,OsMB19, MB19,OsMB25, MB25,OsMB41, MB41,OsMB27, MB27,OsMB49, MB49,OsM8, M8, OsM8a ,OsMB48, MB48,OsMB53, MB53,OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12,OsM3, M3, OsM3a ,OsMB5, MB5, OsMB5a, OsMB5b,OsMB30, MB30,OsMB52, MB52,OsMB35, MB35,OsMB15, MB15,OsMB40, MB40,OsMB9, MB9,OsM11, M11, OsM11a ,OsMB17, MB17,OsMB12, MB12,OsMB34, MB34,OsMB4, MB4,OsMB23, MB23,OsMB45, MB45,OsMB14, MB14,OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13,OsMB54, MB54,OsMB43, MB43,OsMB18, MB18,OsMB3, MB3,OsMB42, MB42,OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7,OsMB32, MB32,OsMB46, MB46,OsM6, M6, OsM6a ,OsM12, M12, OsM12a ,OsMB16, MB16,OsM10, M10, OsM10a ,OsMB22, MB22,OsMB50, MB50,OsMB20, MB20, OsMB20a, OsMB20b,OsMB47, MB47
43258	27337377	Kitaoka N., Wu Y., Zi J., Peters R.J.	Investigating inducible short-chain alcohol dehydrogenases/reductases clarifies rice oryzalexin biosynthesis.	Plant J.			2016	_,_,_,_,_,MAS	OsSDR110C-MS3, SDR110C-MS3 ,OsSDR110C-MI3, SDR110C-MI3 ,OsSDR110C-MI4, SDR110C-MI4,OsSDR110C-MI2, SDR110C-MI2 ,OsSDR110C-MS2, SDR110C-MS2,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 
43259	27451952	Rimlumduan T., Hua Y.L., Tanaka T., Ketudat Cairns JR.	Structure of a plant beta-galactosidase C-terminal domain.	Biochim. Biophys. Acta	1864(10)	1411-8	2016		
43260	27444058	Huang J., Li Z., Zhao D.	Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.	Sci Rep	6	29938	2016	MIR160B,MIR160A,ARF10	miR160b, osa-miR160b, osa-MIR160b, NolmiR-36osa-miR160b-3p osa-miR160b-5p, OsMIR160b,miR160a, osa-miR160a, osa-MIR160aosa-miR160a-3p osa-miR160a-5p, OsMIR160a ,OsARF10, OsARF18, ARF18
43261	27367609	Zhang B., Wu S., Zhang Y., Xu T., Guo F., Tang H., Li X., Wang P., Qian W., Xue Y.	A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).	PLoS Genet.	12(7)	e1006152	2016	LHS1,G1,EG1,MFO1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,eg1, GY1,OsMADS6, MADS6, OsMFO1
43262	27420922	Li J., Li Y., Yin Z., Jiang J., Zhang M., Guo X., Ye Z., Zhao Y., Xiong H., Zhang Z., Shao Y., Jiang C., Zhang H., An G., Paek N.C., Ali J., Li Z.	osasr5 enhances drought tolerance through a stomatal closure pathway associated with ABA and H2 O2 signaling in rice.	Plant Biotechnol. J.			2016	ASR5,ASR2,_,ASR1,_	OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,OsAsr2, OsASR4, OsASR6,Os2OG-Fe (II) oxy, 2OG-Fe (II) oxy,OsAsr1, OsASR3, ASR3, Asr3,OsDjC9
43263	27392090	Kim I.S., Kim Y.S., Kim Y.H., Park A.K., Kim H.W., Lee J.H., Yoon H.S.	Potential Application of the Oryza sativa Monodehydroascorbate reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	PLoS ONE	11(7)	e0158841	2016	_	MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR3, MDHAR1, OsMDHAR1
43264	27462334	Liu M., Li H., Su Y., Li W., Shi C.	g1/ELE Functions in the Development of Rice Lemmas in Addition to Determining Identities of Empty Glumes.	Front Plant Sci	7	1006	2016	PAP2,G1,LHS1,DL	MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,DL, dl(lop), lop, dl, dl1
43265	27457124	Khanday I., Das S., Chongloi G.L., Bansal M., Grossniklaus U., Vijayraghavan U.	Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.	Plant Physiol.	172(1)	372-88	2016	ERF34,YAB5,MADS32,_,HSFB2C,LHS1	OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1,OsMADS32, CFO1, CFO1/OsMADS32, TRI1, OsMADS32/CFO, CFO,OsbHLH108, OsbHLH108/SPT, bHLH108, SPT,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
43266	27477684	Fu M., Wang C., Xue F., Higgins J., Chen M., Zhang D., Liang W.	The DNA topoisomerase VI-B Subunit OsMTOPVIB Is Essential for Meiotic Recombination Initiation in Rice.	Mol Plant			2016	MTOPVIB,RMC1,DMC1A,SPO11-4,TOP6A1,ZEP1	OsMTOPVIB,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsSPO11-4, OsSPO11D,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsZEP1
43267	27434775	Huda A.K., Haque M.A., Zaman R., Swaraz A.M., Kabir A.H.	Silicon Ameliorates Chromium Toxicity Through Phytochelatin Mediated Vacuolar Sequestration in Roots of Oryza sativa (L.).	Int J Phytoremediation		0	2016		
43268	27194802	Mjomba F.M., Zheng Y., Liu H., Tang W., Hong Z., Wang F., Wu W.	Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.	G3 (Bethesda)	6(7)	2013-21	2016	WOX1	Os WUS, WUS, OsWOX1, OsWUS, TAB1, TAB1/WUS, MOC3, MOC3/OsWUS, SRT1
43269	27447607	Lee A., Lee S.S., Jung W.Y., Park H.J., Lim B.R., Kim H.S., Ahn J.C., Cho H.S.	The OsCYP19-4 Gene Is Expressed as Multiple Alternatively Spliced Transcripts Encoding Isoforms with Distinct Cellular Localizations and PPIase Activities under Cold Stress.	Int J Mol Sci	17(7)		2016	CYP19-4	OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8
43270	27473592	Man L., Xiang D., Wang L., Zhang W., Wang X., Qi G.	Stress-responsive gene RsICE1 from Raphanus sativus increases cold tolerance in rice.	Protoplasma			2016	_,DREB1A,_,TPP1	OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,OsTPP1, OsTPS
43271	27462345	Verma P.K., Verma S., Pande V., Mallick S., Deo Tripathi R., Dhankher O.P., Chakrabarty D.	Corrigendum: Overexpression of Rice Glutaredoxin OsGrx_C7 and OsGrx_C2.1 Reduces Intracellular Arsenic Accumulation and Increases Tolerance in Arabidopsis thaliana.	Front Plant Sci	7	1048	2016	GRX9	OsGRX9, OsGrx_C2.1, Grx_C2.1 
43272	27380315	Sakuraba Y., Han S.H., Yang H.J., Piao W., Paek N.C.	Mutation of Rice EARLY FLOWERING3.1 (OsELF3.1) delays leaf senescence in rice.	Plant Mol. Biol.	92(1-2)	223-34	2016	NAC58,ELF3.2,NAC106,_,EIL1,HD3B,BZIP72,WRKY42	OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,ELF3_chr.1, OsELF3.2, ELF3.2,ONAC106,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a,Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,OsWRKY42, WRKY-42
43273	27467198	Louren?o TF., Serra T.S., Cordeiro A.M., Swanson S.J., Gilroy S., Saibo N., Oliveira M.M.	Rice root curling, a response to mechanosensing, is modulated by the rice E3-ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (OsHOS1).	Plant Signal Behav		0	2016	_,RMC,EREBP1,_,ERF99	OsHOS1, HOS1,OsRMC, OsRLK, OsDUF26, DUF26,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80, OsEREBP2, EREBP2
43274	27477683	Fang C., Zhang H., Wan J., Wu Y., Li K., Jin C., Chen W., Wang S., Wang W., Zhang H., Zhang P., Zhang F., Qu L., Liu X., Zhou D.X., Luo J.	Control of leaf senescence by a MeOH-Jasmonates Cascade That Is Epigenetically Regulated by OsSRT1 in Rice.	Mol Plant			2016	WRKY30,AOC,ACX4,PME11,PME6,ERF3,JMT2,NOL,PMEI1,TSD2 ,_,_,_,_,OPR1,JMT1,_	OsWRKY30,OsAOC, AOC1, OsAOC1, HB, CPM2,OsACX4,PME11, OsPME11,OsPME6, OsPME1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,JMT-2, OsJMT-2, OsJMT2,nol, NOL1, OsNOL, OsNOL1,PMEI-1,OsTSD2, OsQUA2, QUA2 ,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2,ACX1, OsACX1,ACX2, OsACX2,ACX3, OsACX3,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,JMT-1, OsJMT-1, OsJMT1,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85
43275	27424498	Gui J., Zheng S., Liu C., Shen J., Li J., Li L.	OsREM4.1 Interacts with OsSERK1 to Coordinate the Interlinking between Abscisic Acid and Brassinosteroid Signaling in Rice.	Dev. Cell	38(2)	201-13	2016	_,D61,REM4.1,BZIP23	OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsREM4.1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
43276	27462908	Ishii K., Kazama Y., Morita R., Hirano T., Ikeda T., Usuda S., Hayashi Y., Ohbu S., Motoyama R., Nagamura Y., Abe T.	Linear Energy Transfer-Dependent Change in Rice Gene Expression Profile after Heavy-Ion Beam Irradiation.	PLoS ONE	11(7)	e0160061	2016	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,NTP10,_,TOP1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,TOP2,_,_,_,_,_,_,_,_,_,_	OsPCNA, PCNA,,MutM,TagI,TagI,TagI,,,,,RecA,,Rev1,,,XRCC4,,TOP3,,MMS2, OsUEV1C, UEV1C,EME1,BARD1,PARP2A,SSB,MMS19,XPC,SSB,PARP2B,OsNTP10,,OsTOP1,RFC1, OsRFC1,OsRAD1, RAD1 ,XPF (Rad1), XPF, Rad1,RFC5, OsRFC5,TOP3, TOP3alpha,PARP1,RecA,XPV,,RecA,MND1,NBS1,TagI,TagI,AlkA,Rad23,Ogg,OsTOP2,RFC4, OsRFC4,Ung,RFC2, OsRFC2,CSB,RecG,OsEnS-38, OsPARP3, PARP3,Rad23,ERCC1 (Rad10), ERCC1, Rad10,CSB,XAB2
43277	27411391	Lu L., Qiu W., Gao W., Tyerman S.D., Shou H., Wang C.	OsPAP10c, a novel secreted acid phosphatase in rice, plays an important role in the utilization of external organic phosphorus.	Plant Cell Environ.			2016	PAP10B,PAP10A,PAP10D,PAP10C	OsPAP10b,OsPAP10a, PAP10,OsPAP10d,OsPAP10c
43278	27405463	Sheng P., Wu F., Tan J., Zhang H., Ma W., Chen L., Wang J., Wang J., Zhu S., Guo X., Wang J., Zhang X., Cheng Z., Bao Y., Wu C., Liu X., Wan J.	A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice.	Plant Mol. Biol.	92(1-2)	209-22	2016	EF1,PHYB,_,HD3A,RFT1,_	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,phyB, PHYB1, OsPHYB, OsphyB,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsBBX23, OsCCT27, BBX23, CCT27, OsR, OsCOL13, COL13
43279	27486471	Kothari K.S., Dansana P.K., Giri J., Tyagi A.K.	Rice Stress Associated Protein 1 (OsSAP1) Interacts with Aminotransferase (OsAMTR1) and Pathogenesis-Related 1a Protein (OsSCP) and Regulates Abiotic Stress Responses.	Front Plant Sci	7	1057	2016	PR1A,SAP1,_	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,Osi-SAP1, ISAP1, OsiSAP1, OSISAP1, OsSAP1,Osh36, OsH36, H36, OsAMTR1, AMTR1
43280	27382137	Lee D.K., Jung H., Jang G., Jeong J.S., Kim Y.S., Ha S.H., Do Choi Y., Kim J.K.	Overexpression of the OsERF71 Transcription Factor Alters Rice Root Structure and Drought Resistance.	Plant Physiol.	172(1)	575-88	2016	FC1,CCR1,_,_,_,_,CCR10,_,ERF71,_	OsCAD7, fc1, CAD7,OsCCR1,C4H1, OsC4H1, OsC4H, C4H,OsC4H ,prx83,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsCCR10, CCR10,prx22, OsPRX22,OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,prx15
43281	27412910	Feng S.J., Liu X.S., Tao H., Tan S.K., Chu S.S., Oono Y., Zhang X.D., Chen J., Yang Z.M.	Variation of DNA methylation patterns associated with gene expression in rice (Oryza sativa) exposed to cadmium.	Plant Cell Environ.			2016	DRM2,PR1B,_	OsDRM2, osdrm2, DRM2-1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
43282	27378815	Li X., Yang D.L., Sun L., Li Q., Mao B., He Z.	The Systemic Acquired Resistance Regulator OsNPR1 Attenuates Growth by Repressing Auxin Signaling through Promoting IAA-Amido Synthase Expression.	Plant Physiol.	172(1)	546-58	2016	_,YUCCA7,_,_,_,RR2,RR1,_,_,_,_,RR9,IAA24,NH1,IAA14,CIGR2,CIGR1,GH3-8,SAUR2,_,SAUR39	OsCDAP1, GID1L2,OsYUCCA7, OsYUC7,OsGSR1, GASR7,GID1, GID1L2,,rr2, Osrr2, OsRR2, Rra10, OsRRA10,rr1, OsRR1, Rra9, OsRRA9,SEPK1,OsSERK3, OsSERL6, OsBI-SERK1, OsBAK1-3,,,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsIAA24,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,OsCIGR2, OsGRAS-36, OsGRAS36, GRAS-36, GRAS36,OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsSAUR2,ARGOS,OsSAUR39
43283	27456761	Xue Z., Li Y., Zhang L., Shi W., Zhang C., Feng M., Zhang F., Tang D., Yu H., Gu M., Cheng Z.	OsMTOPVIB promotes meiotic DNA double-strand break formation in rice.	Mol Plant			2016	_,DMC1A,TOP6A1,MTOPVIB	gammaH2AX ,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsMTOPVIB
43284	27531886	Wang Y., Zhang J., Shi X., Peng Y., Li P., Lin D., Dong Y., Teng S.	Temperature-sensitive albino gene tcd5, encoding a monooxygenase, affects chloroplast development at low temperatures.	J. Exp. Bot.			2016	PSBA,TCD5,_,V3,RPOTP,RBCL,PSAA,RPOA	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,OsTCD5, TSV, OsTSV, CSV1, OsCSV1,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,v3, RNRL1, rnrl1, RNR1, RNRL,OsRpo Tp, OsRpoTp, NEP, RpoTp,rbcL, rbcA, OsrbcL,PsaA, psaA, PsAA1,rope, rpoalpha, Rpoalpha, rope, RpoA 
43285	27524243	Yu J., Lai Y., Wu X., Wu G., Guo C.	Overexpression of OsEm1 encoding a group I LEA protein confers enhanced drought tolerance in rice.	Biochem. Biophys. Res. Commun.	478(2)	703-9	2016	RAB16C,EM,RAB16A,LEA3-1	rab21, OsLEA27, rab16C,Em*, EMP1, Emp1, EM, Em, OsEm, Osem, OsLEA21, OsEm1, Em1 ,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3
43286	27532299	Wang F., Liu J., Chen M., Zhou L., Li Z., Zhao Q., Pan G., Zaidi S.H., Cheng F.	Involvement of Abscisic Acid in PSII Photodamage and D1 Protein Turnover for Light-Induced Premature Senescence of Rice Flag Leaves.	PLoS ONE	11(8)	e0161203	2016	_,FTSH2,FTSH3,FTSH8,FTSH5,PSBA,PSBC,_,FTSH7,FTSH1,FTSH4	psbB,OsFtsH2, FtsH2,OsFtsH3, FtsH3,OsFtsH8, FtsH8,OsFtsH5, FtsH5,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,psbC, cp43 ,PSF,OsFtsH7, FtsH7,OsFtsH1, FtsH1,OsFtsH4, FtsH4
43287	27565208	Liu H., Li Q., Yang F., Zhu F., Sun Y., Tao Y., Lo C.	Differential Regulation of protochlorophyllide oxidoreductase Abundances by VIRESCENT 5A (OsV5A) and VIRESCENT 5B (OsV5B) in Rice Seedlings.	Plant Cell Physiol.			2016	FGL,_,V5B,YLC1	fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsPorA, PORA, OsPORA,OsV5B,OsV5A, V5A
43288	27574184	Li X., Xia K., Liang Z., Chen K., Gao C., Zhang M.	MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds.	Sci Rep	6	32158	2016	_,IAA6,MIR393,_	OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,OsIAA6,OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,OsTIR1, TIR1, OsFbox248, Os_F0717
43289	27545590	Wang J., Wu F., Zhu S., Xu Y., Cheng Z., Wang J., Li C., Sheng P., Zhang H., Cai M., Guo X., Zhang X., Wang C., Wan J.	Overexpression of OsMYB1R1-VP64 fusion protein increases grain yield in rice by delaying flowering time.	FEBS Lett.			2016	RFT1,MYB1R1 ,HD3A,EF1	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsMYB1R1, 1R-MYB1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
43290	27499679	Akamatsu A., Shimamoto K., Kawano Y.	Crosstalk of Signaling Mechanisms Involved in Host Defense and Symbiosis Against Microorganisms in Rice.	Curr. Genomics	17(4)	297-307	2016	RLCK176,RBOHB,_,XA21,_,_,PID2,_,_,RLCK185	OsRLCK176,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,LYP4, Os-LYP4, OsLYP4,Xa21*, Xa21, OsXA21,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsRacGEF1, RacGEF1,Pi-d2, Pi-d(t)2, PiD2(t), Pid2, PI-D2, Pi-d2(t),LYP6, Os-LYP6, OsLYP6,Os-FLS2, FLS2, OsFLS2,OsRLCK185
43291	27573887	Wang L., Wang C., Wang Y., Niu M., Ren Y., Zhou K., Zhang H., Lin Q., Wu F., Cheng Z., Wang J., Zhang X., Guo X., Jiang L., Lei C., Wang J., Zhu S., Zhao Z., Wan J.	WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice.	Plant Mol. Biol.			2016	_,WSL2,TRXZ,_,_,_,_,WSL3,_,_,_,_,_	OsPAP6, PAP6, OsPAP6/OsFLN1, OsFLN1, FLN1,,OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz,OsPAP3, PAP3, OsPAP3/OspTAC10, OspTAC10, pTAC10,OsPAP2, PAP2, OsPAP2/OspTAC2, OspTAC2, pTAC2,OsPAP7, PAP7, OsPAP7/OspTAC14, OspTAC14, pTAC14,OsPAP11, PAP11,OspTAC3, pTAC3, OsPAP1, PAP1,OsPAP9, PAP9, OsPAP9/OsFSD2, OsFSD2, FSD2,OsPAP4, PAP4, OsPAP4/OsFSD3, OsFSD3, FSD3,OsPAP12, PAP12, OsPAP12/OspTAC7, OspTAC7, pTAC7,OsPAP5, PAP5, OsPAP5/OspTAC12, OspTAC12, pTAC12,OsPAP8, PAP8
43292	27549111	Gao Y., Liu C., Li Y., Zhang A., Dong G., Xie L., Zhang B., Ruan B., Hong K., Xue D., Zeng D., Guo L., Qian Q., Gao Z.	QTL analysis for chalkiness of rice and fine mapping of a candidate gene for qACE9.	Rice (N Y)	9(1)	41	2016	AGPS1	OsAGPS1, APS1, OsAPS1, AGPsma
43293	27514852	Kong W., Yu X., Chen H., Liu L., Xiao Y., Wang Y., Wang C., Lin Y., Yu Y., Wang C., Jiang L., Zhai H., Zhao Z., Wan J.	The catalytic subunit of magnesium-protoporphyrin IX monomethyl ester cyclase forms a chloroplast complex to regulate chlorophyll biosynthesis in rice.	Plant Mol. Biol.	92(1-2)	177-91	2016	LCAA,_,FGL,YL1	OsLCAA,OsFLU1, FLU1,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP
43294	27502283	Hwang S.K., Koper K., Satoh H., Okita T.W.	Rice endosperm starch phosphorylase (Pho1) assembles with disproportionating enzyme (Dpe1) to form a protein complex that enhances synthesis of malto-oligosaccharides.	J. Biol. Chem.			2016	DPE1,DPE2,_	OsDPE1, OsDpe1, Dpe1 ,OsDPE2, OsDpe2, Dpe2,Pho1, OsPho1, OsPHOL, PHOL
43295	27570530	Chen B.X., Li W.Y., Gao Y.T., Chen Z.J., Zhang W.N., Liu Q.J., Chen Z., Liu J.	Involvement of polyamine oxidase-Produced Hydrogen Peroxide during Coleorhiza-Limited Germination of Rice Seeds.	Front Plant Sci	7	1219	2016	PAO1,PAO5,PAO4,PAO7,_,_,_,_,PAOB,PAOA,PAO3	OsPAO1, OsAO4, AO4,OsPAO5, OsAO2, AO2,OsPAO4, OsAO1, AO1,OsPAO7, OsPAO3, PAO3,OsHDMA703, HDMA703, OsPAO10, PAO10,OsHDMA702, HDMA702, OsPAO8, PAO8,OsHDMA701, HDMA701, OsPAO9, PAO9,OsHDMA704, HDMA704, OsPAO11, PAO11,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,PAOa, OsPAO2, PAO2, OsPAOa,OsPAO3, OsAO3, AO3
43296	27539813	Blanvillain-Baufum? S., Reschke M., Sol? M., Auguy F., Doucoure H., Szurek B., Meynard D., Portefaix M., Cunnac S., Guiderdoni E., Boch J., Koebnik R.	Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors.	Plant Biotechnol. J.			2016	11N3	OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14
43297	27497286	Qu L., Wu C., Zhang F., Wu Y., Fang C., Jin C., Liu X., Luo J.	Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.	J. Exp. Bot.			2016	TSD2 	OsTSD2, OsQUA2, QUA2 
43298	27512017	Hu Q., Tang D., Wang H., Shen Y., Chen X., Ji J., Du G., Li Y., Cheng Z.	The endonuclease homolog Osrad1 promotes accurate meiotic double-strand break repair by suppressing non-homologous end joining.	Plant Physiol.			2016	_,_,_	OsRAD1, RAD1 ,OsHUS1, HUS1 ,OsRAD9, RAD9 
43299	27519312	Miyata K., Hayafune M., Kobae Y., Kaku H., Nishizawa Y., Masuda Y., Shibuya N., Nakagawa T.	Evaluation of the Role of the LysM Receptor-Like Kinase, OsNFR5/OsRLK2 for AM Symbiosis in Rice.	Plant Cell Physiol.			2016	_,AM11,_,AM1,AM3,_	OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,AM11,OsRAM1, RAM1 ,AM1, prx53,AM3,OsLysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2
43300	27555514	Chen X., Li J., Wang L., Ma G., Zhang W.	A mutagenic study identifying critical residues for the structure and function of rice manganese transporter OsMTP8.1.	Sci Rep	6	32073	2016	MTP8.1,MTP9	OsMTP8.1,OsMTP9
43301	27493611	Jung G.Y., Park J.Y., Choi H.J., Yoo S.J., Park J.K., Jung H.W.	A Rice Gene Homologous to Arabidopsis AGD2-LIKE DEFENSE1 Participates in disease resistance Response against Infection with Magnaporthe oryzae.	Plant Pathol. J.	32(4)	357-62	2016	PR1B,PR1A,_	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsALD1, ALD1
43302	27527801	Tantong S., Pringsulaka O., Weerawanich K., Meeprasert A., Rungrotmongkol T., Sarnthima R., Roytrakul S., Sirikantaramas S.	Two novel antimicrobial defensins from rice identified by gene coexpression network analyses.	Peptides	84	7-16	2016		
43303	27176759	Zhao L., Qiu G., Anderson C.W., Meng B., Wang D., Shang L., Yan H., Feng X.	Mercury methylation in rice paddies and its possible controlling factors in the Hg mining area, Guizhou province, Southwest China.	Environ. Pollut.	215	1-9	2016		
43304	27242875	Wei Y., Zeng H., Hu W., Chen L., He C., Shi H.	Comparative Transcriptional Profiling of Melatonin Synthesis and Catabolic Genes Indicates the Possible Role of Melatonin in Developmental and Stress Responses in Rice.	Front Plant Sci	7	676	2016		
43305	27229732	Li B., Liu D., Li Q., Mao X., Li A., Wang J., Chang X., Jing R.	Overexpression of wheat gene TaMOR improves root system architecture and grain yield in Oryza sativa.	J. Exp. Bot.	67(14)	4155-67	2016		
43306	27197779	Triplett L.R., Cohen S.P., Heffelfinger C., Schmidt C.L., Huerta A.I., Tekete C., Verdier V., Bogdanove A.J., Leach J.E.	A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola.	Plant J.			2016		
43307	27436946	Yang Y., Zhou J., Li J., Xu P., Zhang Y., Tao D.	Mapping QTLs for hybrid sterility in three AA genome wild species of Oryza.	Breed. Sci.	66(3)	367-71	2016		
43308	27178300	Mizobuchi R., Fukuoka S., Tsushima S., Yano M., Sato H.	QTLs for Resistance to Major Rice Diseases Exacerbated by Global Warming: Brown Spot, Bacterial Seedling Rot, and bacterial grain rot.	Rice (N Y)	9(1)	23	2016		
43309	27187354	Wang F., Li W., Zhu J., Fan F., Wang J., Zhong W., Wang M.B., Liu Q., Zhu Q.H., Zhou T., Lan Y., Zhou Y., Yang J.	Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus.	Int J Mol Sci	17(5)		2016		
43310	27194741	Ferrero-Serrano ?., Assmann S.M.	The alpha-subunit of the rice heterotrimeric G protein, RGA1, regulates drought tolerance during the vegetative phase in the dwarf rice mutant d1.	J. Exp. Bot.	67(11)	3433-43	2016		
43311	27242842	Li Y., Wang R., Hu Z., Li H., Lu S., Zhang J., Lin Y., Zhou F.	Expression of a Codon-Optimized dsdA Gene in Tobacco Plastids and Rice Nucleus Confers D-Serine Tolerance.	Front Plant Sci	7	640	2016		
43312	27142801	Tian D., Chen Z., Chen Z., Zhou Y., Wang Z., Wang F., Chen S.	Allele-specific marker-based assessment revealed that the rice blast resistance genes Pi2 and Pi9 have not been widely deployed in Chinese indica rice cultivars.	Rice (N Y)	9(1)	19	2016		
43313	27165311	Pradhan S., Chakraborty A., Sikdar N., Chakraborty S., Bhattacharyya J., Mitra J., Manna A., Dutta Gupta S., Sen S.K.	Marker-free transgenic rice expressing the vegetative insecticidal protein (Vip) of Bacillus thuringiensis shows broad insecticidal properties.	Planta			2016		
43314	27209244	Yu H.Y., Ding X., Li F., Wang X., Zhang S., Yi J., Liu C., Xu X., Wang Q.	The availabilities of arsenic and cadmium in rice paddy fields from a mining area: The role of soil extractable and plant silicon.	Environ. Pollut.	215	258-65	2016		
43315	27050577	Scheuermann K.K., Jia Y.	Identification of a Pi9-Containing Rice Germplasm with a Newly Developed Robust Marker.	Phytopathology	106(8)	871-6	2016		
43316	27211925	Chen H., Li C., Liu L., Zhao J., Cheng X., Jiang G., Zhai W.	The Fd-GOGAT1 mutant gene lc7 confers resistance to Xanthomonas oryzae pv. Oryzae in rice.	Sci Rep	6	26411	2016		
43317	27173349	Mertz-Henning LM., Pegoraro C., Maia L.C., Venske E., Rombaldi C.V., Costa de Oliveira A.	Expression profile of rice Hsp genes under anoxic stress.	Genet. Mol. Res.	15(2)		2016		
43318	27208229	Garc?s HM., Spencer V.M., Kim M.	Features of Rice DNA Methylation Pathways in Floral Symmetry.	Plant Physiol.	171(3)	2055-68	2016		
43319	27126515	Singh R., Dangol S., Chen Y., Choi J., Cho Y.S., Lee J.E., Choi M.O., Jwa N.S.	Magnaporthe oryzae Effector AVR-Pii Helps to Establish Compatibility by Inhibition of the Rice NADP-Malic Enzyme Resulting in Disruption of Oxidative Burst and Host Innate Immunity.	Mol. Cells	39(5)	426-38	2016		
43320	27297991	Tang X.J., Peng C., Zhang J., Cai Y., You X.M., Kong F., Yan H.G., Wang G.X., Wang L., Jin J., Chen W.W., Chen X.G., Ma J., Wang P., Jiang L., Zhang W.W., Wan J.M.	ADP-glucose pyrophosphorylase large subunit 2 is essential for storage substance accumulation and subunit interactions in rice endosperm.	Plant Sci.	249	70-83	2016		
43321	27137867	Tan S., Liu F., Pan X.X., Zang Y.P., Jin F., Zu W.X., Qi X.T., Xiao W., Yin L.P.	CSN6, a subunit of the COP9 signalosome, is involved in early response to iron deficiency in Oryza sativa.	Sci Rep	6	25485	2016	IDEF1,NAS2,_,CSN6,YSL15,IRT1,_,NAS1,_	OsLFL2, LFL2, OsIDEF1,OsNAS2,Osjab1, jab1, CSN5, OsCSN5,OsCSN6,OsYSL15, OsYs7,OsIRT1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS1,OsCUL1, CUL1
43322	27220955	Kotake T., Yamanashi Y., Imaizumi C., Tsumuraya Y.	Metabolism of L-arabinose in plants.	J. Plant Res.	129(5)	781-92	2016		
43323	27174847	Hu L., Li H., Qin R., Xu R., Li J., Li L., Wei P., Yang J.	Plant phosphomannose isomerase as a selectable marker for rice transformation.	Sci Rep	6	25921	2016		
43324	27242831	Bhattacharjee A., Khurana J.P., Jain M.	Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest Their Role in Abiotic Stress Response.	Front Plant Sci	7	627	2016		
43325	27070427	Jia Y., Zhou E., Lee S., Bianco T.	Coevolutionary Dynamics of Rice Blast Resistance Gene Pi-ta and Magnaporthe oryzae Avirulence Gene AVR-Pita 1.	Phytopathology	106(7)	676-83	2016		
43326	27213684	Rahman H., Ramanathan V., Nallathambi J., Duraialagaraja S., Muthurajan R.	Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.	BMC Biotechnol.	16 Suppl 1	35	2016		
43327	27169562	Yamauchi T., Tanaka A., Mori H., Takamure I., Kato K., Nakazono M.	Ethylene-dependent aerenchyma formation in adventitious roots is regulated differently in rice and maize.	Plant Cell Environ.			2016		
43328	27436945	Zhao L., Lei J., Huang Y., Zhu S., Chen H., Huang R., Peng Z., Tu Q., Shen X., Yan S.	Mapping quantitative trait loci for heat tolerance at anthesis in rice using chromosomal segment substitution lines.	Breed. Sci.	66(3)	358-66	2016		
43329	27323093	Qu D., Yan F., Li M.A., Varotto C., Zhao Z.Y.	Comparative analysis of miR168 promoters in three plant species.	Genet. Mol. Res.	15(2)		2016		
43330	27215671	Kim M.Y., Kim T.G., Yang M.S.	Production and immunogenicity of Actinobacillus pleuropneumoniae ApxIIA protein in transgenic rice callus.	Protein Expr. Purif.			2016		
43331	27240428	Miyamoto K., Enda I., Okada T., Sato Y., Watanabe K., Sakazawa T., Yumoto E., Shibata K., Asahina M., Iino M., Yokota T., Okada K., Yamane H.	Jasmonoyl-l-isoleucine is required for the production of a flavonoid phytoalexin but not diterpenoid phytoalexins in ultraviolet-irradiated rice leaves.	Biosci. Biotechnol. Biochem.	80(10)	1934-8	2016		
43332	27246014	Liu Y., Chen L., Liu Y., Dai H., He J., Kang H., Pan G., Huang J., Qiu Z., Wang Q., Hu J., Liu L., Chen Y., Cheng X., Jiang L., Wan J.	Marker assisted pyramiding of two brown planthopper resistance genes, Bph3 and Bph27 (t), into elite rice Cultivars.	Rice (N Y)	9(1)	27	2016		
43333	27317309	Li Q., Zhang D., Chen M., Liang W., Wei J., Qi Y., Yuan Z.	Development of japonica Photo-Sensitive Genic Male Sterile Rice Lines by Editing Carbon Starved Anther Using CRISPR/Cas9.	J Genet Genomics	43(6)	415-9	2016		
43334	27335351	Kaneko K., Takamatsu T., Inomata T., Oikawa K., Itoh K., Hirose K., Amano M., Nishimura S., Toyooka K., Matsuoka K., Pozueta-Romero J., Mitsui T.	N-Glycomic and Microscopic Subcellular Localization Analyses of NPP1, 2 and 6 Strongly Indicate that trans-Golgi Compartments Participate in the Golgi to Plastid Traffic of Nucleotide Pyrophosphatase/Phosphodiesterases in Rice.	Plant Cell Physiol.	57(8)	1610-28	2016		
43335	26976728	Pradhan S.K., Nayak D.K., Pandit E., Behera L., Anandan A., Mukherjee A.K., Lenka S., Barik D.P.	Incorporation of Bacterial Blight Resistance Genes Into Lowland Rice Cultivar Through Marker-Assisted Backcross Breeding.	Phytopathology	106(7)	710-8	2016		
43336	27182958	Shahzad R., Waqas M., Khan A.L., Asaf S., Khan M.A., Kang S.M., Yun B.W., Lee I.J.	Seed-borne endophytic Bacillus amyloliquefaciens RWL-1 produces gibberellins and regulates endogenous phytohormones of Oryza sativa.	Plant Physiol. Biochem.	106	236-43	2016		
43337	27133567	Miyamoto K., Fujita M., Shenton M.R., Akashi S., Sugawara C., Sakai A., Horie K., Hasegawa M., Kawaide H., Mitsuhashi W., Nojiri H., Yamane H., Kurata N., Okada K., Toyomasu T.	Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.	Plant J.			2016		
43338	27242822	Dong W., Thomas N., Ronald P.C., Goyer A.	Overexpression of Thiamin Biosynthesis Genes in Rice Increases Leaf and Unpolished Grain Thiamin Content But Not Resistance to Xanthomonas oryzae pv. oryzae.	Front Plant Sci	7	616	2016		
43339	27436950	Maeda S., Hayashi N., Sasaya T., Mori M.	Overexpression of BSR1 confers broad-spectrum resistance against two bacterial diseases and two major fungal diseases in rice.	Breed. Sci.	66(3)	396-406	2016		
43340	27241493	Zheng M., Wang Y., Liu X., Sun J., Wang Y., Xu Y., Lv J., Long W., Zhu X., Guo X., Jiang L., Wang C., Wan J.	The RICE MINUTE-like1 (RML1) gene, encoding a ribosomal large subunit protein L3B, regulates leaf morphology and plant architecture in rice.	J. Exp. Bot.	67(11)	3457-69	2016		
43341	27242816	Rahman A., Nahar K., Hasanuzzaman M., Fujita M.	Calcium Supplementation Improves Na(+)/K(+) Ratio, Antioxidant Defense and Glyoxalase Systems in Salt-Stressed Rice Seedlings.	Front Plant Sci	7	609	2016		
43342	27258255	Huangfu J., Li J., Li R., Ye M., Kuai P., Zhang T., Lou Y.	The Transcription Factor OsWRKY45 Negatively Modulates the Resistance of Rice to the Brown Planthopper Nilaparvata lugens.	Int J Mol Sci	17(6)		2016		
43343	27167516	Toriyama K., Kazama T.	Development of Cytoplasmic Male Sterile IR24 and IR64 Using CW-CMS/Rf17 System.	Rice (N Y)	9(1)	22	2016		
43344	27241276	Harmoko R., Yoo J.Y., Ko K.S., Ramasamy N.K., Hwang B.Y., Lee E.J., Kim H.S., Lee K.J., Oh D.B., Kim D.Y., Lee S., Li Y., Lee S.Y., Lee K.O.	N-glycan containing a core alpha1,3-fucose residue is required for basipetal auxin transport and gravitropic response in rice (Oryza sativa).	New Phytol.	212(1)	108-22	2016		
43345	27246096	Xu D., Shi J., Rautengarten C., Yang L., Qian X., Uzair M., Zhu L., Luo Q., An G., Wa?mann F., Schreiber L., Heazlewood J.L., Scheller H.V., Hu J., Zhang D., Liang W.	Defective pollen Wall 2 (DPW2) Encodes an Acyl Transferase Required for Rice pollen Development.	Plant Physiol.			2016	DPW2	OsDPW2
43346	27242827	Fabre D., Adriani D.E., Dingkuhn M., Ishimaru T., Punzalan B., Lafarge T., Cl?ment-Vidal A., Luquet D.	The qTSN4 Effect on flag leaf Size, Photosynthesis and panicle size, Benefits to Plant Grain Production in Rice, Depending on Light Availability.	Front Plant Sci	7	623	2016		
43347	27242837	Samejima H., Babiker A.G., Mustafa A., Sugimoto Y.	Identification of Striga hermonthica-Resistant Upland Rice Varieties in Sudan and Their Resistance Phenotypes.	Front Plant Sci	7	634	2016		
43348	27195813	Wu Y., Mirzaei M., Pascovici D., Chick J.M., Atwell B.J., Haynes P.A.	Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease.	J Proteomics	143	73-82	2016		
43349	27436953	Sakata M., Seno M., Matsusaka H., Takahashi K., Nakamura Y., Yamagata Y., Angeles E.R., Mochizuki T., Kumamaru T., Sato M., Enomoto A., Tashiro K., Kuhara S., Satoh H., Yoshimura A.	Development and evaluation of rice giant embryo mutants for high oil content originated from a high-yielding cultivar 'Mizuhochikara'.	Breed. Sci.	66(3)	425-33	2016		
43350	27142249	Pham C.L., Rey A., Lo V., Soul?s M., Ren Q., Meisl G., Knowles T.P., Kwan A.H., Sunde M.	Self-assembly of MPG1, a hydrophobin protein from the rice blast fungus that forms functional amyloid coatings, occurs by a surface-driven mechanism.	Sci Rep	6	25288	2016		
43351	27218863	Ma X., Zhu C., Yang N., Gan L., Xia K.	gamma-Aminobutyric acid addition alleviates ammonium toxicity by limiting ammonium accumulation in rice (Oryza sativa) seedlings.	Physiol Plant			2016		
43352	27165035	Kim S., Cho Y.J., Song E.S., Lee S.H., Kim J.G., Kang L.W.	Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae.	BMC Genomics	17	345	2016		
43353	27164982	Shamsudin N.A., Swamy B.P., Ratnam W., Sta Cruz MT., Sandhu N., Raman A.K., Kumar A.	Pyramiding of drought yield QTLs into a high quality Malaysian rice cultivar MRQ74 improves yield under reproductive stage drought.	Rice (N Y)	9(1)	21	2016		
43354	27223617	Zhou H., Luo C., Fang X., Xiang Y., Wang X., Zhang R., Chen Z.	Loss of <EM class="new_gene">GltB</EM> Inhibits Biofilm Formation and Biocontrol Efficiency of Bacillus subtilis Bs916 by Altering the Production of gamma-Polyglutamate and Three Lipopeptides.	PLoS ONE	11(5)	e0156247	2016		
43355	27145723	Scafaro A.P., Gall? A., Van Rie J., Carmo-Silva E., Salvucci M.E., Atwell B.J.	heat tolerance in a wild Oryza species is attributed to maintenance of Rubisco activation by a thermally stable Rubisco activase ortholog.	New Phytol.	211(3)	899-911	2016		
43356	27160855	Kassa M.T., Haas S., Schliephake E., Lewis C., You F.M., Pozniak C.J., Kr?mer I., Perovic D., Sharpe A.G., Fobert P.R., Koch M., Wise I.L., Fenwick P., Berry S., Simmonds J., Hourcade D., Senellart P., Duchalais L., Robert O., F?rster J., Thomas J.B., Friedt W., Ordon F., Uauy C., McCartney C.A.	A saturated SNP linkage map for the orange wheat blossom midge resistance gene Sm1.	Theor. Appl. Genet.	129(8)	1507-17	2016		
43357	27136273	Tadrowski S., Pedroso M.M., Sieber V., Larrabee J.A., Guddat L.W., Schenk G.	Metal Ions Play an Essential Catalytic Role in the Mechanism of Ketol-acid reductoisomerase.	Chemistry	22(22)	7427-36	2016		
43358	27198693	Zhang J., Luo W., Zhao Y., Xu Y., Song S., Chong K.	Comparative metabolomic analysis reveals a reactive oxygen species-dominated dynamic model underlying chilling environment adaptation and tolerance in rice.	New Phytol.	211(4)	1295-310	2016		
43359	27304219	Cui K., Wang H., Liao S., Tang Q., Li L., Cui Y., He Y.	Transcriptome Sequencing and Analysis for Culm Elongation of the World's Largest Bamboo (Dendrocalamus sinicus).	PLoS ONE	11(6)	e0157362	2016		
43360	27286833	Kaur N., Dhawan M., Sharma I., Pati P.K.	Interdependency of Reactive Oxygen Species generating and scavenging system in salt sensitive and salt tolerant cultivars of rice.	BMC Plant Biol.	16(1)	131	2016		
43361	27330561	Mizuno H., Kasuga S., Kawahigashi H.	The sorghum SWEET gene family: stem sucrose accumulation as revealed through transcriptome profiling.	Biotechnol Biofuels	9	127	2016		
43362	27313595	Zhang W., Zhao G., Gao L., Kong X., Guo Z., Wu B., Jia J.	Functional Studies of heading date-Related Gene TaPRR73, a Paralog of Ppd1 in Common Wheat.	Front Plant Sci	7	772	2016		
43363	27320861	Horiuchi R., Hirotsu N., Miyanishi N.	N-glycan transition of the early developmental stage in Oryza sativa.	Biochem. Biophys. Res. Commun.	477(3)	426-32	2016		
43364	27323767	Hur Y.J., Cho J.H., Park H.S., Noh T.H., Park D.S., Lee J.Y., Sohn Y.B., Shin D., Song Y.C., Kwon Y.U., Lee J.H.	Pyramiding of two rice bacterial blight resistance genes, Xa3 and Xa4, and a closely linked cold-tolerance QTL on chromosome 11.	Theor. Appl. Genet.			2016		
43365	27357959	Liu X., Zhang C., Wang X., Liu Q., Yuan D., Pan G., Sun S.S., Tu J.	Development of high-lysine rice via endosperm-specific expression of a foreign LYSINE RICH PROTEIN gene.	BMC Plant Biol.	16(1)	147	2016		
43366	27357911	Lin Y., Tan L., Zhao L., Sun X., Sun C.	RSL3, a protein with AAA+ domain localized in chloroplast, sustains leaf longevity in rice.	J Integr Plant Biol			2016		
43367	27419124	Lee G.H., Kang I.K., Kim K.M.	Mapping of Novel QTL Regulating Grain Shattering Using Doubled Haploid Population in Rice (Oryza sativa L.).	International Journal of Genomics	2016	2128010	2016		
43368	27352859	Tian T., You Q., Zhang L., Yi X., Yan H., Xu W., Su Z.	SorghumFDB: sorghum functional genomics database with multidimensional network analysis.	Database (Oxford)	2016		2016		
43369	27298602	Park H.J., Park C.J., Bae N., Han S.W.	Deciphering the Role of Tyrosine Sulfation in Xanthomonas oryzae pv. oryzae Using Shotgun Proteomic Analysis.	Plant Pathol. J.	32(3)	266-72	2016		
43370	27349470	Habachi-Houimli Y., Khalfallah Y., Makni H., Makni M., Bouktila D.	Large-scale bioinformatic analysis of the regulation of the disease resistance NBS gene family by microRNAs in Poaceae.	C. R. Biol.			2016		
43371	27251022	Ma X., Fu Y., Zhao X., Jiang L., Zhu Z., Gu P., Xu W., Su Z., Sun C., Tan L.	Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing.	Sci Rep	6	27425	2016		
43372	27363861	Zhang H.W., Fan Y.Y., Zhu Y.J., Chen J.Y., Yu S.B., Zhuang J.Y.	Dissection of the qTGW1.1 region into two tightly-linked minor QTLs having stable effects for grain weight in rice.	BMC Genet.	17(1)	98	2016		
43373	27172458	Mohanty B., Lakshmanan M., Lim S.H., Kim J.K., Ha S.H., Lee D.Y.	Light-specific transcriptional regulation of the accumulation of carotenoids and phenolic compounds in rice leaves.	Plant Signal Behav	11(6)	e1184808	2016		
43374	27366148	Metz S., Cabrera J.M., Rueda E., Giri F., Amavet P.	FullSSR: Microsatellite Finder and Primer Designer.	Adv Bioinformatics	2016	6040124	2016		
43375	27345721	Xu H., Watanabe K.A., Zhang L., Shen Q.J.	WRKY transcription factor genes in wild rice Oryza nivara.	DNA Res.	23(4)	311-23	2016		
43376	27348754	Khan N.U., Liu M., Yang X., Qiu D.	Fungal Elicitor MoHrip2 Induces Disease Resistance in Rice Leaves, Triggering Stress-Related Pathways.	PLoS ONE	11(6)	e0158112	2016		
43377	27309534	Kobayashi T., Sasaki S., Utsumi Y., Fujita N., Umeda K., Sawada T., Kubo A., Abe J., Colleoni C., Ball S., Nakamura Y.	Comparison of Chain-Length Preferences and Glucan Specificities of Isoamylase-Type alpha-Glucan Debranching Enzymes from Rice, Cyanobacteria, and Bacteria.	PLoS ONE	11(6)	e0157020	2016		
43378	27318280	Shibaya T., Hori K., Ogiso-Tanaka E., Yamanouchi U., Shu K., Kitazawa N., Shomura A., Ando T., Ebana K., Wu J., Yamazaki T., Yano M.	Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of flowering time in Rice.	Plant Cell Physiol.			2016		
43379	27255512	Adriani D.E., Dingkuhn M., Dardou A., Adam H., Luquet D., Lafarge T.	Rice panicle plasticity in Near Isogenic Lines carrying a QTL for larger panicle is genotype and environment dependent.	Rice (N Y)	9(1)	28	2016		
43380	27357232	Yang L., Wu Y., Yu M., Mao B., Zhao B., Wang J.	Genome-wide transcriptome analysis of female-sterile rice ovule shed light on its abortive mechanism.	Planta			2016		
43381	27294659	Li N., Li Y.	Signaling pathways of seed size control in plants.	Curr. Opin. Plant Biol.	33	23-32	2016		
43382	27336625	Salvatore S., Vandenplas Y.	Hydrolyzed Proteins in Allergy.	Nestle Nutr Inst Workshop Ser	86	11-27	2016		
43383	27252468	Feng Z., Wu C., Wang C., Roh J., Zhang L., Chen J., Zhang S., Zhang H., Yang C., Hu J., You X., Liu X., Yang X., Guo X., Zhang X., Wu F., Terzaghi W., Kim S.K., Jiang L., Wan J.	SLG controls grain size and leaf angle by modulating brassinosteroid homeostasis in rice.	J. Exp. Bot.	67(14)	4241-53	2016	DLT,D11,BZR1,D61,D2,BRD1,DWARF4,SLG	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsBZR1, Os BZR1,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,
43384	27379107	Azizi P., Rafii M.Y., Abdullah S.N., Hanafi M.M., Maziah M., Sahebi M., Ashkani S., Taheri S., Jahromi M.F.	Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice.	Front Plant Sci	7	773	2016		
43385	27336225	Lombardo F., Kuroki M., Yao S.G., Shimizu H., Ikegaya T., Kimizu M., Ohmori S., Akiyama T., Hayashi T., Yamaguchi T., Koike S., Yatou O., Yoshida H.	The superwoman1-cleistogamy2 mutant is a novel resource for gene containment in rice.	Plant Biotechnol. J.			2016		
43386	27273847	Zhang T., Li T., Yang X., Simelton E.	Model biases in rice phenology under warmer climates.	Sci Rep	6	27355	2016		
43387	27356912	Nguyen T.D., Moon S., Nguyen V.N., Gho Y., Chandran A.K., Soh M.S., Song J.T., An G., Oh S.A., Park S.K., Jung K.H.	Genome-wide identification and analysis of rice genes preferentially expressed in pollen at an early developmental stage.	Plant Mol. Biol.	92(1-2)	71-88	2016		
43388	27457988	Molla K.A., Karmakar S., Chanda P.K., Sarkar S.N., Datta S.K., Datta K.	Tissue-specific expression of Arabidopsis NPR1 gene in rice for sheath blight resistance without compromising phenotypic cost.	Plant Sci.	250	105-14	2016		
43389	27325119	Christoff A.P., Passaia G., Salvati C., Alves-Ferreira M., Margis-Pinheiro M., Margis R.	Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.	Plant Mol. Biol.	92(1-2)	193-207	2016		
43390	27292630	Sun L., Lu Y., Yu F., Kronzucker H.J., Shi W.	Biological nitrification inhibition by rice root exudates and its relationship with nitrogen-use efficiency.	New Phytol.			2016		
43391	27368137	Du Z.Y., Arias T., Meng W., Chye M.L.	Plant acyl-CoA-binding proteins: An emerging family involved in plant development and stress responses.	Prog. Lipid Res.	63	165-81	2016		
43392	27362847	Hashemi A., Gharechahi J., Nematzadeh G., Shekari F., Hosseini S.A., Salekdeh G.H.	Two-dimensional blue native/SDS-PAGE analysis of whole cell lysate protein complexes of rice in response to salt stress.	J. Plant Physiol.	200	90-101	2016		
43393	27252469	Zhou W., Wang Y., Wu Z., Luo L., Liu P., Yan L., Hou S.	Homologs of SCAR/WAVE complex components are required for epidermal cell morphogenesis in rice.	J. Exp. Bot.	67(14)	4311-23	2016	LPL3,LPL2	OsLPL3,
43394	27321231	Sun H., Zhou S., Fu Z., Chen G., Zou G., Song X.	A two-year field measurement of methane and nitrous oxide fluxes from rice paddies under contrasting climate conditions.	Sci Rep	6	28255	2016		
43395	27367676	Dom?nguez-Avila JA., Gonz?lez-Aguilar GA., Alvarez-Parrilla E., de la Rosa LA.	Modulation of PPAR Expression and Activity in Response to Polyphenolic Compounds in High Fat Diets.	Int J Mol Sci	17(7)		2016		
43396	27297403	Zhu X., Guo S., Wang Z., Du Q., Xing Y., Zhang T., Shen W., Sang X., Ling Y., He G.	Map-based cloning and functional analysis of ygl8, which controls leaf colour in rice (Oryza sativa).	BMC Plant Biol.	16(1)	134	2016	PSAB,PSAA,_,_,YGL8,FGL,PSBC	PsaB, psaB, PsAA2,PsaA, psaA, PsAA1,PBD, PBGD, HEMC,HEME,,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,psbC, cp43 
43397	27252467	Yang Q.Q., Zhang C.Q., Chan M.L., Zhao D.S., Chen J.Z., Wang Q., Li Q.F., Yu H.X., Gu M.H., Sun S.S., Liu Q.Q.	Biofortification of rice with the essential amino acid lysine: molecular characterization, nutritional evaluation, and field performance.	J. Exp. Bot.	67(14)	4285-96	2016		
43398	27379149	Li X., Zhong Q., Li Y., Li G., Ding Y., Wang S., Liu Z., Tang S., Ding C., Chen L.	Triacontanol Reduces Transplanting Shock in Machine-Transplanted Rice by Improving the Growth and Antioxidant Systems.	Front Plant Sci	7	872	2016		
43399	27217091	Ren L., Huo H., Zhang F., Hao W., Xiao L., Dong C., Xu G.	The components of rice and watermelon root exudates and their effects on pathogenic fungus and watermelon defense.	Plant Signal Behav	11(6)	e1187357	2016		
43400	27372278	Tsuda H., Shiraki M., Inoue E., Saito T.	Generation of poly-beta-hydroxybutyrate from acetate in higher plants: Detection of acetoacetyl CoA reductase- and PHB synthase- activities in rice.	J. Plant Physiol.	201	9-16	2016		
43401	27327960	Azad A.K., Ahmed J., Alum M.A., Hasan M.M., Ishikawa T., Sawa Y., Katsuhara M.	Genome-Wide Characterization of Major Intrinsic Proteins in Four Grass Plants and Their Non-Aqua Transport Selectivity Profiles with Comparative Perspective.	PLoS ONE	11(6)	e0157735	2016		
43402	27318700	Jena K.K., Ballesfin M.L., Vinarao R.B.	Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization.	Theor. Appl. Genet.			2016		
43403	27403427	RoyChowdhury M., Li X., Qi H., Li W., Sun J., Huang C., Wu D.	Functional Characterization of 9-/13-LOXs in Rice and Silencing Their Expressions to Improve Grain Qualities.	Biomed Res Int	2016	4275904	2016		
43404	27390892	Poudyal R.S., Nath K., Zulfugarov I.S., Lee C.H.	Production of superoxide from photosystem II-light harvesting complex II supercomplex in STN8 kinase knock-out rice mutants under photoinhibitory illumination.	J. Photochem. Photobiol. B, Biol.	162	240-7	2016		
43405	27289587	Pompeiano A., Guglielminetti L.	Carbohydrate metabolism in germinating caryopses of Oryza sativa L. exposed to prolonged anoxia.	J. Plant Res.	129(5)	833-40	2016		
43406	27506365	Kang J.H., Jung H.J., Jung M.Y.	One step derivatization with British Anti-Lewsite in combination with gas chromatography coupled to triple-quadrupole tandem mass spectrometry for the fast and selective analysis of inorganic arsenic in rice.	Anal. Chim. Acta	934	231-8	2016		
43407	27446145	Vasudevan K., Vera Cruz CM., Gruissem W., Bhullar N.K.	Geographically Distinct and Domain-Specific Sequence Variations in the Alleles of rice blast resistance gene Pib.	Front Plant Sci	7	915	2016		
43408	27484220	Zou B., Hong X., Ding Y., Wang X., Liu H., Hua J.	Identification and analysis of copine/BONZAI proteins among evolutionarily diverse plant species.	Genome	59(8)	565-73	2016		
43409	27446120	Wu X., Zhang Y., Li Q.Q.	PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants.	Front Plant Sci	7	889	2016		
43410	27289079	Hutin M., C?sari S., Chalvon V., Michel C., Tran T.T., Boch J., Koebnik R., Szurek B., Kroj T.	Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases.	Plant J.			2016		
43411	27322607	Zhang L., Guo R., Fang Z., Liu B.	Genetically modified rice Bt-ShanYou63 expressing Cry1Ab/c protein does not harm Daphnia magna.	Ecotoxicol. Environ. Saf.	132	196-201	2016		
43412	27328708	Agarwal T., Grotewold E., Doseff A.I., Gray J.	MYB31/MYB42 Syntelogs Exhibit Divergent Regulation of Phenylpropanoid Genes in Maize, Sorghum and Rice.	Sci Rep	6	28502	2016		
43413	27342100	Guo F., Han N., Xie Y., Fang K., Yang Y., Zhu M., Wang J., Bian H.	The miR393a/target module regulates seed germination and seedling establishment under submergence in rice (Oryza sativa L.).	Plant Cell Environ.			2016		
43414	27337541	Guo C., Yao L., You C., Wang S., Cui J., Ge X., Ma H.	MID1 Plays an Important Role in Response to Drought Stress during Reproductive Development.	Plant J.			2016		
43415	27390725	Kim H., Kim O.W., Ha A.W., Park S.	Determination of Optimal Harvest Time of Chuchung Variety Green Rice(?) (Oryza sativa L.) with High Contents of GABA, gamma-Oryzanol, and alpha-Tocopherol.	Preventive Nutrition and Food Science	21(2)	97-103	2016		
43416	27264781	Lee H.J., Back K.	2-Hydroxymelatonin promotes the resistance of rice plant to multiple simultaneous abiotic stresses (combined cold and drought).	J. Pineal Res.			2016		
43417	27473144	Yang S.Q., Li W.Q., Miao H., Gan P.F., Qiao L., Chang Y.L., Shi C.H., Chen K.M.	rel2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls leaf rolling in Rice.	Rice (N Y)	9(1)	37	2016	RL14,REL2,ACL1,NAL1,ND1,REL1,TMS10,CEF1,ADL1,_,SHL4,LC2,ROC5,_,RL9,COW1	2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24,,OsACL1, ACL2, OsACL2,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4,CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1,OsREL1,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L,adl1,OsZHD1, ZHD1,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,OsLC2, OsVIL2, VIL2, OsVIL3,Roc5(t), Roc5, GL2-5, OsROC5,OsZHD2, ZHD2,rl9, SLL1/RL9, SLL1,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7
43418	27474933	Cai B., Li Q., Xu Y., Yang L., Bi H., Ai X.	Genome-wide analysis of the fructose 1,6-bisphosphate aldolase (FBA) gene family and functional characterization of FBA7 in tomato.	Plant Physiol. Biochem.	108	251-265	2016		
43419	27403778	Ellur R.K., Khanna A., S GK., Bhowmick P.K., Vinod K.K., Nagarajan M., Mondal K.K., Singh N.K., Singh K., Prabhu K.V., Singh A.K.	Marker-aided Incorporation of Xa38, a Novel Bacterial Blight Resistance Gene, in PB1121 and Comparison of its Resistance Spectrum with xa13?+?Xa21.	Sci Rep	6	29188	2016		
43420	27436282	Xu J., Br?utigam A., Li Y., Weber A.P., Zhu X.G.	Systems analysis of cis-regulatory motifs in C4 photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation.	J. Exp. Bot.			2016		
43421	27520410	Xu Q., Zhao M., Wu K., Fu X., Liu Q.	Emerging insights into heterotrimeric G protein signaling in plants.	J Genet Genomics			2016		
43422	27447698	Chen J., Tang L., Shi P., Yang B., Sun T., Cao W., Zhu Y.	Effects of short-term high temperature on grain quality and starch granules of rice (Oryza sativa L.) at post-anthesis stage.	Protoplasma			2016		
43423	27468288	Dash A.K., Rao R.N., Rao G.J., Verma R.L., Katara J.L., Mukherjee A.K., Singh O.N., Bagchi T.B.	Phenotypic and Marker-Assisted Genetic Enhancement of Parental Lines of Rajalaxmi, an Elite Rice Hybrid.	Front Plant Sci	7	1005	2016		
43424	27516765	Papolu P.K., Dutta T.K., Tyagi N., Urwin P.E., Lilley C.J., Rao U.	Expression of a cystatin transgene in Eggplant Provides Resistance to Root-knot Nematode, Meloidogyne incognita.	Front Plant Sci	7	1122	2016		
43425	27411514	Moin M., Bakshi A., Saha A., Udaya Kumar M., Reddy A.R., Rao K.V., Siddiq E.A., Kirti P.B.	Activation-tagging in indica rice identifies ribosomal proteins as potential targets for manipulation of water-use-efficiency and abiotic stress tolerance in plants.	Plant Cell Environ.			2016		
43426	27439383	Sebastian A., Ahmad I., Prasad M.N.	Iron plaque decrease cadmium accumulation in Oryza sativa L. by acting as a source of iron in addition to obstructing cadmium uptake.	Plant Biol (Stuttg)			2016		
43427	27393148	Zhou Y., Cheng Y., Yang Y., Li X., Supriyo B., Sun X., Yang Y.	Overexpression of SpCBL6, a calcineurin B-like protein of Stipa purpurea, enhanced cold tolerance and reduced drought tolerance in transgenic Arabidopsis.	Mol. Biol. Rep.	43(9)	957-66	2016		
43428	27543262	Xu R., Yang Y., Qin R., Li H., Qiu C., Li L., Wei P., Yang J.	Rapid improvement of grain weight via highly efficient CRISPR/Cas9-mediated multiplex genome editing in rice.	J Genet Genomics			2016		
43429	27450495	Das K., Panda B.B., Sekhar S., Kariali E., Mohapatra P.K., Shaw B.P.	Comparative proteomics of the superior and inferior spikelets at the early grain filling stage in rice cultivars contrast for panicle compactness and ethylene evolution.	J. Plant Physiol.	202	65-74	2016		
43430	27447459	Fedorowicz-Stro?ska O., Koczyk G., Kaczmarek M., Krajewski P., Sadowski J.	Genome-wide identification, characterisation and expression profiles of calcium-dependent protein kinase genes in barley (Hordeum vulgare L.).	J. Appl. Genet.			2016		
43431	27465821	Ookawa T., Aoba R., Yamamoto T., Ueda T., Takai T., Fukuoka S., Ando T., Adachi S., Matsuoka M., Ebitani T., Kato Y., Mulsanti I.W., Kishii M., Reynolds M., Pi?era F., Kotake T., Kawasaki S., Motobayashi T., Hirasawa T.	Precise estimation of genomic regions controlling lodging resistance using a set of reciprocal chromosome segment substitution lines in rice.	Sci Rep	6	30572	2016		
43432	27414467	Yoeun S., Sukhanov A., Han O.	Separation of enzymatic functions and variation of spin state of rice allene oxide synthase-1 by mutation of Phe-92 and Pro-430.	Bioorg. Chem.	68	9-14	2016		
43433	27457210	Segami S., Yamamoto T., Oki K., Noda T., Kanamori H., Sasaki H., Mori S., Ashikari M., Kitano H., Katayose Y., Iwasaki Y., Miura K.	Detection of Novel QTLs Regulating grain size.in Extra-Large Grain Rice (Oryza sativa L.) Lines.	Rice (N Y)	9(1)	34	2016		
43434	27414645	Kazama T., Toriyama K.	Whole Mitochondrial Genome Sequencing and Re-Examination of a Cytoplasmic male sterility-Associated Gene in Boro-Taichung-Type Cytoplasmic Male Sterile Rice.	PLoS ONE	11(7)	e0159379	2016		
43435	27432349	Pabuayon I.M., Yamamoto N., Trinidad J.L., Longkumer T., Raorane M.L., Kohli A.	Reference genes for accurate gene expression analyses across different tissues, developmental stages and genotypes in rice for drought tolerance.	Rice (N Y)	9(1)	32	2016		
43436	27448032	Li Z., Tang L., Qiu J., Zhang W., Wang Y., Tong X., Wei X., Hou Y., Zhang J.	Serine carboxypeptidase 46 Regulates Grain Filling and Seed Germination in Rice (Oryza sativa L.).	PLoS ONE	11(7)	e0159737	2016		
43437	27466812	Zhu G., Li G., Wang D., Yuan S., Wang F.	Changes in the Lodging-Related Traits along with Rice Genetic Improvement in China.	PLoS ONE	11(7)	e0160104	2016		
43438	27381440	Zhang C., Ding Z., Wu K., Yang L., Li Y., Yang Z., Shi S., Liu X., Zhao S., Yang Z., Wang Y., Zheng L., Wei J., Du Z., Zhang A., Miao H., Li Y., Wu Z., Wu J.	Suppression of Jasmonic Acid-Mediated Defense by Viral-Inducible MicroRNA319 Facilitates Virus Infection in Rice.	Mol Plant			2016		
43439	27478151	Taniguchi M., Ochiai A., Takahashi K., Nakamichi S.I., Nomoto T., Saitoh E., Kato T., Tanaka T.	Antimicrobial activity against Porphyromonas gingivalis and mechanism of action of the cationic octadecapeptide AmyI-1-18 and its amino acid-substituted analogs.	J. Biosci. Bioeng.			2016		
43440	27387148	Huang X.Y., Deng F., Yamaji N., Pinson S.R., Fujii-Kashino M., Danku J., Douglas A., Guerinot M.L., Salt D.E., Ma J.F.	A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.	Nat Commun	7	12138	2016		
43441	27471161	Tyagi C., Singh A., Singh I.K.	Mechanistic insights into mode of action of rice allene oxide synthase on hydroxyperoxides: An intermediate step in herbivory-induced jasmonate pathway.	Comput Biol Chem	64	227-236	2016		
43442	27441398	Zhang Q., Zheng T., Hoang L., Wang C., Nafisah, Joseph C., Zhang W., Xu J., Li Z.	Joint Mapping and Allele Mining of the rolled leaf Trait in Rice (Oryza sativa L.).	PLoS ONE	11(7)	e0158246	2016		
43443	27298579	Chunthaburee S., Dongsansuk A., Sanitchon J., Pattanagul W., Theerakulpisut P.	Physiological and biochemical parameters for evaluation and clustering of rice cultivars differing in salt tolerance at seedling stage.	Saudi J Biol Sci	23(4)	467-77	2016		
43444	27448993	Singh P., Sinha A.K.	Differential expression of Mitogen Activated Protein Kinase (MAPK) cascade components post submergence in Oryza sativa ssp indica cv Pusa Basmati 1.	Plant Signal Behav		0	2016		
43445	27420056	Han B., Fu L., Zhang D., He X., Chen Q., Peng M., Zhang J.	Interspecies and Intraspecies Analysis of Trehalose Contents and the Biosynthesis Pathway Gene Family Reveals Crucial Roles of Trehalose in Osmotic-Stress Tolerance in Cassava.	Int J Mol Sci	17(7)		2016		
43446	27472897	Yuan M., Ke Y., Huang R., Ma L., Yang Z., Chu Z., Xiao J., Li X., Wang S.	A host basal transcription factor is a key component for infection of rice by TALE-carrying bacteria.	Elife	5		2016		
43447	27471511	Wu L., Yuan S., Huang L., Sun F., Zhu G., Li G., Fahad S., Peng S., Wang F.	Physiological Mechanisms Underlying the High-grain yield and High-Nitrogen Use Efficiency of Elite Rice Varieties under a Low Rate of Nitrogen Application in China.	Front Plant Sci	7	1024	2016		
43448	27423220	Hao D., Yang S., Huang Y., Su Y.	Identification of structural elements involved in fine-tuning of the transport activity of the rice ammonium transporter OsAMT1;3.	Plant Physiol. Biochem.	108	99-108	2016		
43449	27374612	Lin R., He L., He J., Qin P., Wang Y., Deng Q., Yang X., Li S., Wang S., Wang W., Liu H., Li P., Zheng A.	Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms.	DNA Res.			2016		
43450	27453497	Saha C., Mukherjee G., Agarwal-Banka P., Seal A.	A consortium of non-rhizobial endophytic microbes from Typha angustifolia functions as probiotic in rice and improves nitrogen metabolism.	Plant Biol (Stuttg)			2016		
43451	27415007	Ramakrishnan M., Antony Ceasar S., Duraipandiyan V., Vinod K.K., Kalpana K., Al-Dhabi NA., Ignacimuthu S.	Tracing QTLs for Leaf Blast Resistance and Agronomic Performance of Finger Millet (Eleusine coracana (L.) Gaertn.) Genotypes through Association Mapping and in silico Comparative Genomics Analyses.	PLoS ONE	11(7)	e0159264	2016		
43452	27416927	Ouyang X., Hong X., Zhao X., Zhang W., He X., Ma W., Teng W., Tong Y.	Knock out of the PHOSPHATE 2 Gene TaPHO2-A1 Improves phosphorus uptake and grain yield under Low Phosphorus Conditions in Common Wheat.	Sci Rep	6	29850	2016		
43453	27478742	Ding X., Chen Q., Bao C., Ai A., Zhou Y., Li S., Xie H., Zhu Y., Cai Y., Peng X.	Expression of a mitochondrial gene orfH79 from CMS-Honglian rice inhibits Escherichia coli growth via deficient oxygen consumption.	Springerplus	5(1)	1125	2016		
43454	27459060	Clouse S.D.	Brassinosteroid/Abscisic Acid Antagonism in Balancing Growth and Stress.	Dev. Cell	38(2)	118-20	2016		
43455	27373308	Rashid M.A., Zhao Y., Zhang H., Li J., Li Z.	Nucleotide diversity, natural variation, and evolution of Flexible culm-1 and Strong culm-2 lodging resistance genes in rice.	Genome	59(7)	473-83	2016		
43456	27411911	Dey A., Samanta M.K., Gayen S., Maiti M.K.	The sucrose non-fermenting 1-related kinase 2 gene SAPK9 improves drought tolerance and grain yield in rice by modulating cellular osmotic potential, stomatal closure and stress-responsive gene expression.	BMC Plant Biol.	16(1)	158	2016		
43457	27430511	Aghazadeh R., Zamani M., Motallebi M., Moradyar M., Moghadassi Jahromi Z.	Co-transformation of canola by chimeric chitinase and tlp genes towards improving resistance to Sclerotinia sclerotiorum.	World J. Microbiol. Biotechnol.	32(9)	144	2016		
43458	27369289	Zhang W., Wu L., Wu X., Ding Y., Li G., Li J., Weng F., Liu Z., Tang S., Ding C., Wang S.	Lodging Resistance of Japonica Rice (Oryza Sativa L.): Morphological and Anatomical Traits due to top-Dressing Nitrogen Application Rates.	Rice (N Y)	9(1)	31	2016		
43459	27447945	Liu L., Zheng C., Kuang B., Wei L., Yan L., Wang T.	receptor-like kinase RUPO Interacts with Potassium Transporters to Regulate pollen Tube Growth and Integrity in Rice.	PLoS Genet.	12(7)	e1006085	2016		
43460	27414796	Li Z., An X.K., Liu Y.D., Hou M.L.	Transcriptomic and Expression Analysis of the Salivary Glands in White-Backed Planthoppers, Sogatella furcifera.	PLoS ONE	11(7)	e0159393	2016		
43461	27440503	Li B., Zhang Y., Mohammadi S.A., Huai D., Zhou Y., Kliebenstein D.J.	An Integrative Genetic Study of Rice Metabolism, Growth and Stochastic Variation Reveals Potential C/N Partitioning Loci.	Sci Rep	6	30143	2016		
43462	27464824	Song L., Wang R., Zhang L., Wang Y., Yao S.	CRR1 encoding callose synthase functions in ovary expansion by affecting vascular cell patterning in rice.	Plant J.			2016	GSL8	OsGSL8, OsGSC, GSC, CRR1, OsCRR1
43463	27444416	Meng J., Mabubu J.I., Han Y., He Y., Zhao J., Hua H., Feng Y., Wu G.	No impact of transgenic cry1C rice on the rove beetle Paederus fuscipes, a generalist predator of brown planthopper Nilaparvata lugens.	Sci Rep	6	30303	2016		
43464	27434423	Wan Y., Yu Y., Wang Q., Qiao Y., Li H.	Cadmium uptake dynamics and translocation in rice seedling: Influence of different forms of selenium.	Ecotoxicol. Environ. Saf.	133	127-134	2016		
43465	27380139	Wu Y., Huang M., Tao X., Guo T., Chen Z., Xiao W.	Quantitative trait loci identification and meta-analysis for rice panicle-related traits.	Mol. Genet. Genomics	291(5)	1927-40	2016		
43466	27412613	Roy S., Marndi B.C., Mawkhlieng B., Banerjee A., Yadav R.M., Misra A.K., Bansal K.C.	Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India.	BMC Genet.	17(1)	107	2016		
43467	27269510	Tayi L., Maku R., Patel H.K., Sonti R.V.	Action of Multiple Cell Wall-Degrading Enzymes Is Required for Elicitation of Innate Immune Responses During Xanthomonas oryzae pv. oryzae Infection in Rice.	Mol. Plant Microbe Interact.	29(8)	599-608	2016		
43468	27454201	Ishikawa T., Ito Y., Kawai-Yamada M.	Molecular characterization and targeted quantitative profiling of the sphingolipidome in rice.	Plant J.			2016		
43469	27454702	Mgonja E.M., Balimponya E.G., Kang H., Bellizzi M., Park C.H., Li Y., Mabagala R., Sneller C., Correll J., Opiyo S., Talbot N.J., Mitchell T., Wang G.L.	Genome-wide Association Mapping of Rice Resistance Genes Against Magnaporthe oryzae Isolates from Four African Countries.	Phytopathology		PHYTO01160028R	2016		
43470	27525873	Zeng Y.W., Sun D., Du J., Pu X.Y., Yang S.M., Yang X.M., Yang T., Yang J.Z.	Identification of QTLs for resistant starch and total alkaloid content in brown and polished rice.	Genet. Mol. Res.	15(3)		2016		
43471	27458473	Nieves-Cordones M., Mart?nez V., Benito B., Rubio F.	Comparison between Arabidopsis and Rice for Main Pathways of K(+) and Na(+) Uptake by Roots.	Front Plant Sci	7	992	2016		
43472	27553634	Xiong W., Dooner H.K., Du C.	Rolling-circle amplification of centromeric Helitrons in plant genomes.	Plant J.			2016		
43473	27540108	Gu L., Wu Y., Jiang M., Si W., Zhang X., Tian D., Yang S.	Dissimilar manifestation of heterosis under nutrient-deficient and nutrient-sufficient condition.	Plant Physiol.			2016		
43474	27494320	Pradhan S.K., Barik S.R., Sahoo A., Mohapatra S., Nayak D.K., Mahender A., Meher J., Anandan A., Pandit E.	Population Structure, Genetic Diversity and Molecular Marker-Trait Association Analysis for High Temperature Stress Tolerance in Rice.	PLoS ONE	11(8)	e0160027	2016		
43475	27575481	Zhang Y., Liu X.H., Zhan Y.Z., Zhang L.Y., Li Z.M., Li Y.H., Zhang X., Wang B.L.	Synthesis and biological activities of novel 5-substituted-1,3,4-oxadiazole Mannich bases and bis-Mannich bases as ketol-acid reductoisomerase inhibitors.	Bioorg. Med. Chem. Lett.			2016		
43476	27492010	Islam M.R., Alam M.S., Khan A.I., Hossain I., Adam L.R., Daayf F.	Analyses of genetic diversity of bacterial blight pathogen, Xanthomonas oryzae pv. oryzae using IS1112 in Bangladesh.	C. R. Biol.			2016		
43477	27515683	Qi W., Zhu T., Tian Z., Li C., Zhang W., Song R.	High-efficiency CRISPR/Cas9 multiplex gene editing using the glycine tRNA-processing system-based strategy in maize.	BMC Biotechnol.	16(1)	58	2016		
43478	27539357	Hirota T., Tsuboi H., Iizuka-Koga M., Takahashi H., Asashima H., Yokosawa M., Kondo Y., Ohta M., Wakasa Y., Matsumoto I., Takaiwa F., Sumida T.	Suppression of glucose-6-phosphate-isomerase induced arthritis by oral administration of transgenic rice seeds expressing altered peptide ligands of glucose-6-phosphate-isomerase.	Mod Rheumatol		1-23	2016		
43479	27522959	Kubo F.C., Yasui Y., Kumamaru T., Sato Y., Hirano H.Y.	Genetic analysis of rice mutants responsible for narrow leaf phenotype and reduced vein number.	Genes Genet. Syst.			2016		
43480	27525914	Miao L.X., Jiang M., Zhang Y.C., Yang X.F., Zhang H.Q., Zhang Z.F., Wang Y.Z., Jiang G.H.	Genomic identification, phylogeny, and expression analysis of MLO genes involved in susceptibility to powdery mildew in Fragaria vesca.	Genet. Mol. Res.	15(3)		2016		
43481	27468303	Xia H., Zhang H., Wang W., Yang X., Wang F., Su J., Xia H., Xu K., Cai X., Lu B.R.	Ambient insect pressure and recipient genotypes determine fecundity of transgenic crop-weed rice hybrid progeny: Implications for environmental biosafety assessment.	Evol Appl	9(7)	847-56	2016		
43482	27493141	Chen Q., Liang W., Qian F., Qian B., Cao J., Zhang D., Xu Y., Tang L.	Rice-produced MSP142 of Plasmodium falciparum elicits antibodies that inhibit parasite growth in vitro.	Parasite Immunol.			2016		
43483	27565205	Fukuda M., Kawagoe Y., Murakami T., Washida H., Sugino A., Nagamine A., Okita T.W., Ogawa M., Kumamaru T.	The Dual Roles of the Golgi Transport 1 (GOT1B): RNA Localization to the Cortical Endoplasmic Reticulum and the Export of Proglutelin and alpha-globulin from the Cortical-ER to the Golgi.	Plant Cell Physiol.			2016		
43484	27522958	Sugiyama S.H., Tanaka W., Hirano H.Y.	Polar patterning of the spikelet is disrupted in the two opposite lemma mutant in rice.	Genes Genet. Syst.			2016		
43485	27538481	Cui J., Chen B., Wang H., Han Y., Chen X., Zhang W.	Glucosidase II beta-subunit, a novel substrate for caspase-3-like activity in rice, plays as a molecular switch between autophagy and programmed cell death.	Sci Rep	6	31764	2016	_,_,ALDH6B2     ,_,BZIP50,GAS2,HSP90	OsFKBP62a, OsFKBP64,RMtATPb, atpB, AtpB ,OsALDH6B2  ,HSP40,OsbZIP60, bZIP50, OsbZIP50, OsbZIP74, OsbZIP50-S,OsGAS2,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
43486	27530495	Li H., Liu Y., Chen Y., Wang S., Wang M., Xie T., Wang G.	Biochar amendment immobilizes lead in rice paddy soils and reduces its phytoavailability.	Sci Rep	6	31616	2016		
43487	27544770	Xu F., Bao J., He Q., Park Y.J.	Genome-wide association study of eating and cooking qualities in different subpopulations of rice (Oryza sativa L.).	BMC Genomics	17	663	2016		
43488	27500558	Lee K., Zawadzka A., Czarnocki Z., Reiter R.J., Back K.	Molecular cloning of melatonin 3-hydroxylase and its production of cyclic 3-hydroxymelatonin in rice (Oryza sativa).	J. Pineal Res.			2016		
43489	27498808	Igarashi K., Kazama T., Toriyama K.	A Gene Encoding Pentatricopeptide Repeat Protein Partially Restores Fertility in RT98-Type Cytoplasmic Male-Sterile Rice.	Plant Cell Physiol.			2016		
43490	27463793	Yan S., Zhang H., Huang Y., Tan J., Wang P., Wang Y., Hou H., Huang J., Li L.	Single-wall and multi-wall carbon nanotubes promote rice root growth by eliciting the similar molecular pathways and epigenetic regulation.	IET Nanobiotechnol	10(4)	222-9	2016		
43491	27486025	Mishra S., Singh B., Misra P., Rai V., Singh N.K.	Haplotype distribution and association of candidate genes with salt tolerance in Indian wild rice germplasm.	Plant Cell Rep.			2016		
43492	27519315	Morita R., Inoue K., Ikeda K.I., Hatanaka T., Misoo S., Fukayama H.	starch content in leaf sheath Controlled by CO2-Responsive CCT protein is a Potential Determinant of Photosynthetic Capacity in Rice.	Plant Cell Physiol.			2016		
43493	27479744	de Saint Germain A., Clav? G., Badet-Denisot MA., Pillot J.P., Cornu D., Le Caer JP., Burger M., Pelissier F., Retailleau P., Turnbull C., Bonhomme S., Chory J., Rameau C., Boyer F.D.	An histidine covalent receptor and butenolide complex mediates strigolactone perception.	Nat. Chem. Biol.			2016		
43494	27535768	Gimhani D.R., Gregorio G.B., Kottearachchi N.S., Samarasinghe W.L.	SNP-based discovery of salinity-tolerant QTLs in a bi-parental population of rice (Oryza sativa).	Mol. Genet. Genomics			2016		
43495	27494628	Li B., Zhang Y., Li J., Yao G., Pan H., Hu G., Chen C., Zhang H., Li Z.	Fine Mapping of Two Additive Effect Genes for Awn Development in Rice (Oryza sativa L.).	PLoS ONE	11(8)	e0160792	2016	AN3-1,AN1	An3-1,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1
43496	27535791	Zhou S., Liu X., Zhou C., Zhou Q., Zhao Y., Li G., Zhou D.X.	Cooperation between the H3K27me3 chromatin marker and non-CG methylation in epigenetic regulation.	Plant Physiol.			2016		
43497	27515776	Mati? S., Bagnaresi P., Biselli C., Orru' L., Amaral Carneiro G., Siciliano I., Val? G., Gullino M.L., Spadaro D.	Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi.	BMC Genomics	17(1)	608	2016		
43498	27558448	Fang Y., Wang X., Wang L., Pan X., Xiao J., Wang X.E., Wu Y., Zhang W.	Functional characterization of open chromatin in bidirectional promoters of rice.	Sci Rep	6	32088	2016		
43499	27496332	Hu J., Chen G., Zhang H., Qian Q., Ding Y.	Comparative transcript profiling of alloplasmic male-sterile lines revealed altered gene expression related to pollen development in rice (Oryza sativa L.).	BMC Plant Biol.	16(1)	175	2016		
43500	27481351	Sethi S., Saini J.S., Mohan A., Brar N.K., Verma S., Sarao N.K., Gill K.S.	Comparative and evolutionary analysis of alpha-amylase gene across monocots and dicots.	Funct. Integr. Genomics			2016		
43501	27560036	Wang J., Yin Z., Tang W., Cai X., Gao C., Zhang H., Zheng X., Wang P., Zhang Z.	The thioredoxin MoTrx2 protein mediates ROS balance and controls pathogenicity as a target of the transcription factor MoAP1 in Magnaporthe oryzae.	Mol. Plant Pathol.			2016		
43502	27555853	Chen L., Yang X., Luo D., Yu W.	Efficient Production of a Bioactive Bevacizumab Monoclonal Antibody Using the 2A Self-cleavage Peptide in Transgenic Rice Callus.	Front Plant Sci	7	1156	2016		
43503	27549409	Faricelli M.E., Val?rik M., Dubcovsky J.	Erratum to: Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium.	Funct. Integr. Genomics			2016		
43504	27508500	Yao N., Lee C.R., Semagn K., Sow M., Nwilene F., Kolade O., Bocco R., Oyetunji O., Mitchell-Olds T., Ndjiondjop M.N.	QTL Mapping in Three Rice Populations Uncovers Major Genomic Regions Associated with African Rice Gall Midge Resistance.	PLoS ONE	11(8)	e0160749	2016		
43505	27540387	Cui L.L., Lu Y.S., Li Y., Yang C., Peng X.X.	Overexpression of Glycolate Oxidase Confers Improved Photosynthesis under High Light and High Temperature in Rice.	Front Plant Sci	7	1165	2016		
43506	27554933	Kuang Q., Xu J., Wang K., Zhou S., Liu X.	Structure and Digestion of Hybrid Indica Rice Starch and Its Biosynthesis.	Int. J. Biol. Macromol.			2016		
43507	27467463	Liu J., Fu S., Yang L., Luan M., Zhao F., Luan S., Lan W.	Vacuolar SPX-MFS transporters are essential for phosphate adaptation in plants.	Plant Signal Behav	11(8)	e1213474	2016		
43508	27559341	Ding L., Li Y., Wang Y., Gao L., Wang M., Chaumont F., Shen Q., Guo S.	Root ABA Accumulation Enhances Rice Seedling drought tolerance under Ammonium Supply: Interaction with Aquaporins.	Front Plant Sci	7	1206	2016		
43509	27521428	Liu H., Nonomura K.I.	Histone H3 modifications are widely reprogrammed during male meiosis I in rice dependently on mel1 Argonaute protein.	J. Cell. Sci.			2016		
43510	27555860	Li B., Li Q., Mao X., Li A., Wang J., Chang X., Hao C., Zhang X., Jing R.	Two Novel AP2/EREBP transcription factor Genes TaPARG Have Pleiotropic Functions on Plant Architecture and Yield-Related Traits in Common Wheat.	Front Plant Sci	7	1191	2016		
43511	27565968	Chawla M., Verma V., Kapoor M., Kapoor S.	A novel application of periodic acid-Schiff (PAS) staining and fluorescence imaging for analysing tapetum and microspore development.	Histochem. Cell Biol.			2016		
43512	27531613	Li T., Yaokui L., Dan Z., Bigang M., Qiming L., Yuanyi H., Ye S., Yan P., Binran Z., Shitou X.	Characteristic and inheritance analysis of targeted mutagenesis mediated by genome editing in rice.	Yi Chuan	38(8)	746-55	2016		
43513	27574525	M?odzi?ska E., Zboi?ska M.	Phosphate Uptake and Allocation - A Closer Look at Arabidopsis thaliana L. and Oryza sativa L.	Front Plant Sci	7	1198	2016		
43514	27532545	Yasmin S., Zaka A., Imran A., Zahid M.A., Yousaf S., Rasul G., Arif M., Mirza M.S.	Plant Growth Promotion and Suppression of Bacterial Leaf Blight in Rice by Inoculated Bacteria.	PLoS ONE	11(8)	e0160688	2016		
43515	27536521	Sha Y., Wang Q., Li Y.	Suppression of Magnaporthe oryzae and interaction between Bacillus subtilis and rice plants in the control of rice blast.	Springerplus	5(1)	1238	2016		
43516	27498027	Zhang Z., Li X., Zhang C., Zou H., Wu Z.	Isolation, structural analysis, and expression characteristics of the maize nuclear factor Y gene families.	Biochem. Biophys. Res. Commun.	478(2)	752-8	2016		
43517	27493192	Chen L., Yu Y., Zhang X., Liu C., Ye C., Fan L.	PcircRNA_finder: a software for circRNA prediction in plants.	Bioinformatics			2016		
43518	27495313	Hinge V.R., Patil H.B., Nadaf A.B.	Aroma volatile analyses and 2AP characterization at various developmental stages in Basmati and Non-Basmati scented rice (Oryza sativa L.) cultivars.	Rice (N Y)	9(1)	38	2016		
43519	27551285	Ray S., Singh P.K., Gupta D.K., Mahato A.K., Sarkar C., Rathour R., Singh N.K., Sharma T.R.	Analysis of Magnaporthe oryzae Genome Reveals a Fungal Effector, Which Is Able to Induce Resistance Response in Transgenic Rice Line Containing Resistance Gene, Pi54.	Front Plant Sci	7	1140	2016		
43520	27559339	Zhai S., Xia X., He Z.	Carotenoids in Staple Cereals: Metabolism, Regulation, and Genetic Manipulation.	Front Plant Sci	7	1197	2016		
43521	27497661	Wu Y., Li J., Wang Y., Li X., Li Y., Zhu L., Li J., Wu G.	Development and application of a general plasmid reference material for GMO screening.	Plasmid			2016		
43522	27539013	Miraghazadeh A., Zhang P., Harding C., Hossain S., Hayden M., Wong D., Spielmeyer W., Chandler P.M.	The use of SNP hybridisation arrays and cytogenetics to characterise deletions of chromosome 4B in hexaploid wheat (Triticum aestivum L.).	Theor. Appl. Genet.			2016		
43523	27546334	Liu D., Zheng S., Wang X.	Lanthanum regulates the reactive oxygen species in the roots of rice seedlings.	Sci Rep	6	31860	2016		
43524	27528428	Park Y.R., Choi M.J., Park S.J., Kang H.	Three zinc-finger RNA-binding proteins in cabbage (Brassica rapa) play diverse roles in seed germination and plant growth under normal and abiotic stress conditions.	Physiol Plant			2016		
43525	27426698	Mou R.X., Cao Z.Y., Lin X.Y., Wu L., Cao Z.Z., Zhu Z.W., Chen M.X.	Characterization of the phytochelatins and their derivatives in rice exposed to cadmium based on high-performance liquid chromatography coupled with data-dependent hybrid linear ion trap orbitrap mass spectrometry.	Rapid Commun. Mass Spectrom.	30(16)	1891-900	2016		
43526	27555544	Yokosho K., Yamaji N., Ma J.F.	OsFRDL1 expressed in nodes is required for distribution of iron to grains in rice.	J. Exp. Bot.			2016		
43527	27567632	Bai C., Berman J., Farre G., Capell T., Sandmann G., Christou P., Zhu C.	Reconstruction of the astaxanthin biosynthesis pathway in rice endosperm reveals a metabolic bottleneck at the level of endogenous beta-carotene hydroxylase activity.	Transgenic Res.			2016		
43528	27513992	Bahuguna R.N., Solis C.A., Shi W., Jagadish K.S.	Post-flowering night respiration and altered sink activity account for high night temperature-induced grain yield and quality loss in rice (Oryza sativa).	Physiol Plant			2016		
43529	27566485	Kim M.Y., Kim B.Y., Oh S.M., Reljic R., Jang Y.S., Yang M.S.	Oral immunisation of mice with transgenic rice calli expressing cholera toxin B subunit fused to consensus dengue cEDIII antigen induces antibodies to all four dengue serotypes.	Plant Mol. Biol.			2016		
43530	27507407	Qiao W., Qi L., Cheng Z., Su L., Li J., Sun Y., Ren J., Zheng X., Yang Q.	Development and characterization of chromosome segment substitution lines derived from Oryza rufipogon in the genetic background of O. sativa spp. indica cultivar 9311.	BMC Genomics	17	580	2016		
43531	27543605	Liu C., Zhu H., Xing Y., Tan J., Chen X., Zhang J., Peng H., Xie Q., Zhang Z.	albino leaf 2 is involved in the splicing of chloroplast group I and II introns in rice.	J. Exp. Bot.			2016		
43532	27545518	Ma L., Sang X., Zhang T., Yu Z., Li Y., Zhao F., Wang Z., Wang Y., Yu P., Wang N., Zhang C., Ling Y., Yang Z., He G.	ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice.	New Phytol.			2016		
43533	27501838	Chung P.J., Jung H., Jeong D.H., Ha S.H., Choi Y.D., Kim J.K.	Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice.	BMC Genomics	17	563	2016		
43534	27555861	Abhilash Kumar V., Balachiranjeevi C.H., Bhaskar Naik S., Rambabu R., Rekha G., Harika G., Hajira S.K., Pranathi K., Anila M., Kousik M., Vijay Kumar S., Yugander A., Aruna J., Dilip Kumar T., Vijaya Sudhakara Rao K., Hari Prasad AS., Madhav M.S., Laha G.S., Balachandran S.M., Prasad M.S., Viraktamath B.C., Ravindra Babu V., Sundaram R.M.	Development of Gene-Pyramid Lines of the Elite Restorer Line, RPHR-1005 Possessing Durable Bacterial Blight and Blast Resistance.	Front Plant Sci	7	1195	2016		
43535	27544640	Damaris R.N., Li M., Liu Y., Chen X., Murage H., Yang P.	A proteomic analysis of salt stress response in seedlings of two African rice cultivars.	Biochim. Biophys. Acta	1864(11)	1570-1578	2016		
43536	27228993	Tyagi W., Rai M.	Root transcriptomes of two acidic soil adapted Indica rice genotypes suggest diverse and complex mechanism of low phosphorus tolerance.	Protoplasma			2016		
43537	27194164	He Y., Zhan F., Li Y., Xu W., Zu Y., Yue M.	Effect of enhanced UV-B radiation on methane emission in a paddy field and rice root exudation of low-molecular-weight organic acids.	Photochem. Photobiol. Sci.	15(6)	735-43	2016		
43538	27193349	Ji Y., Zhou Y., Ma C., Feng Y., Hao Y., Rui Y., Wu W., Gui X., Le V.N., Han Y., Wang Y., Xing B., Liu L., Cao W.	Jointed toxicity of TiO2 NPs and Cd to rice seedlings: NPs alleviated Cd toxicity and Cd promoted NPs uptake.	Plant Physiol. Biochem.			2016		
43539	27192712	Henry A., Wehler R., Grondin A., Franke R., Quintana M.	Environmental and physiological effects on grouping of drought-tolerant and susceptible rice varieties related to rice (Oryza sativa) root hydraulics under drought.	Ann. Bot.			2016		
43540	27174682	Kumagai E., Homma K., Kuroda E., Shimono H.	Finlay-Wilkinson's regression coefficient as a pre-screening criterion for yield responsiveness to elevated atmospheric CO2 concentration in crops.	Physiol Plant			2016		
43541	27185548	Sun Z., Liu Z., Zhou W., Jin H., Liu H., Zhou A., Zhang A., Wang M.Q.	Temporal interactions of plant - insect - predator after infection of bacterial pathogen on rice plants.	Sci Rep	6	26043	2016		
43542	27288224	Danila F.R., Quick W.P., White R.G., Furbank R.T., von Caemmerer S.	The Metabolite Pathway between bundle sheath and Mesophyll: Quantification of Plasmodesmata in Leaves of C3 and C4 Monocots.	Plant Cell	28(6)	1461-71	2016		
43543	27375646	Edzesi W.M., Dang X., Liang L., Liu E., Zaid I.U., Hong D.	Genetic Diversity and Elite Allele Mining for Grain Traits in Rice (Oryza sativa L.) by Association Mapping.	Front Plant Sci	7	787	2016		
43544	27350029	Yang J., Gong W., Shi S., Du L., Sun J., Song S., Chen B., Zhang Z.	Analyzing the performance of fluorescence parameters in the monitoring of leaf nitrogen content of paddy rice.	Sci Rep	6	28787	2016		
43545	27311455	Yu R., Yan W., Liang M., Dai X., Chen H., Sun Y., Deng X.W., Chen X., He H., Chen L.	Exploring the genetic characteristics of 93-11 and Nipponbare recombination inbred lines based on the GoldenGate SNP assay.	Sci China Life Sci	59(7)	700-8	2016		
43546	27468828	do Amaral MN., Arge L.W., Benitez L.C., Danielowski R., Silveira S.F., Farias D.D., de Oliveira AC., da Maia LC., Braga E.J.	Comparative transcriptomics of rice plants under cold, iron, and salt stresses.	Funct. Integr. Genomics			2016		
43547	27406081	Zhou L., Liu S., Wu W., Chen D., Zhan X., Zhu A., Zhang Y., Cheng S., Cao L., Lou X., Xu H.	Dissection of genetic architecture of rice plant height and heading date by multiple-strategy-based association studies.	Sci Rep	6	29718	2016		
43548	27385201	Chern M., Xu Q., Bart R.S., Bai W., Ruan D., Sze-To WH., Canlas P.E., Jain R., Chen X., Ronald P.C.	Correction: A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.	PLoS Genet.	12(7)	e1006182	2016		
43549	27448955	Wang J., Lv M., Islam F., Gill R.A., Yang C., Ali B., Yan G., Zhou W.	Salicylic acid mediates antioxidant defense system and ABA pathway related gene expression in Oryza sativa against quinclorac toxicity.	Ecotoxicol. Environ. Saf.	133	146-156	2016		
43550	27516766	Hussain S., Yin H., Peng S., Khan F.A., Khan F., Sameeullah M., Hussain H.A., Huang J., Cui K., Nie L.	Comparative Transcriptional Profiling of Primed and Non-primed Rice Seedlings under Submergence Stress.	Front Plant Sci	7	1125	2016		
43551	27453463	Zhou L., Liu Z., Liu Y., Kong D., Li T., Yu S., Mei H., Xu X., Liu H., Chen L., Luo L.	A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice.	Sci Rep	6	30264	2016		
43552	27388982	Brizio P., Benedetto A., Squadrone S., Curcio A., Pellegrino M., Ferrero M., Abete M.C.	Heavy metals and essential elements in Italian cereals.	Food Addit Contam Part B Surveill		1-7	2016		
43553	27381441	Ning Y., Wang R., Shi X., Zhou X., Wang G.L.	A Layered Defense Strategy Mediated by Rice E3?Ubiquitin Ligases against Diverse Pathogens.	Mol Plant	9(8)	1096-8	2016		
43554	27296957	Wang W., Zhai Y., Cao L., Tan H., Zhang R.	Endophytic bacterial and fungal microbiota in sprouts, roots and stems of rice (Oryza sativa L.).	Microbiol. Res.	188-189	1-8			
43555	27498978	Ghoochani O.M., Ghanian M., Baradaran M., Azadi H.	Multi Stakeholders' Attitudes toward Bt rice in Southwest, Iran: Application of TPB and Multi Attribute Models.	Integr Psychol Behav Sci			2016		
43556	27319052	Ali K., Rai R.D., Tyagi A.	Expression analysis of bZIP transcription factor encoding genes in response to water deficit stress in rice.	Indian J. Exp. Biol.	54(5)	332-7	2016		
43557	27228161	Biscarini F., Cozzi P., Casella L., Riccardi P., Vattari A., Orasen G., Perrini R., Tacconi G., Tondelli A., Biselli C., Cattivelli L., Spindel J., McCouch S., Abbruscato P., Val? G., Piffanelli P., Greco R.	Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions.	PLoS ONE	11(5)	e0155425	2016		
43558	27193099	Passricha N., Saifi S., Ansari M.W., Tuteja N.	Prediction and validation of cis-regulatory elements in 5' upstream regulatory regions of Lectin receptor-like kinase gene family in rice.	Protoplasma			2016		
43559	27192711	Zhu X.F., Zhu C.Q., Zhao X.S., Zheng S.J., Shen R.F.	Ethylene is involved in root phosphorus remobilization in rice (Oryza sativa) by regulating cell-wall pectin and enhancing phosphate translocation to shoots.	Ann. Bot.			2016		
43560	27198135	Feng Y., Lu Q., Zhai R., Zhang M., Xu Q., Yang Y., Wang S., Yuan X., Yu H., Wang Y., Wei X.	Genome wide association mapping for grain shape traits in indica rice.	Planta			2016		
43561	27294384	Vejchasarn P., Lynch J.P., Brown K.M.	Genetic Variability in Phosphorus Responses of Rice Root Phenotypes.	Rice (N Y)	9(1)	29	2016		
43562	27324699	Zheng Y., Crawford G.W., Jiang L., Chen X.	Rice Domestication Revealed by Reduced Shattering of Archaeological rice from the Lower Yangtze valley.	Sci Rep	6	28136	2016		
43563	27300326	Hu J., Xiao C., He Y.	Recent progress on the genetics and molecular breeding of brown planthopper resistance in rice.	Rice (N Y)	9(1)	30	2016		
43564	27246799	Guo J., Xu X., Li W., Zhu W., Zhu H., Liu Z., Luan X., Dai Z., Liu G., Zhang Z., Zeng R., Tang G., Fu X., Wang S., Zhang G.	Overcoming inter-subspecific hybrid sterility in rice by developing indica-compatible japonica lines.	Sci Rep	6	26878	2016		
43565	27389871	Marulanda J.J., Mi X., Melchinger A.E., Xu J.L., W?rschum T., Longin C.F.	Optimum breeding strategies using genomic selection for hybrid breeding in wheat, maize, rye, barley, rice and triticale.	Theor. Appl. Genet.			2016		
43566	27519313	Gao L., Liu M., Wang M., Shen Q., Guo S.	Enhanced Salt Tolerance under Nitrate Nutrition is Associated with Apoplast Na+ Content in Canola (Brassica. napus L.) and Rice (Oryza sativa L.) Plants.	Plant Cell Physiol.			2016		
43567	27568375	Zhang H.Y., Luo M., Johnson S.D., Zhu X.W., Liu L., Huang F., Liu Y.T., Xu P.Z., Wu X.J.	Parental Genome Imbalance Causes Post-Zygotic Seed Lethality and Deregulates Imprinting in Rice.	Rice (N Y)	9(1)	43	2016		
43568	27542721	Bedre R., Mangu V.R., Srivastava S., Sanchez L.E., Baisakh N.	Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity.	BMC Genomics	17(1)	657	2016		
43569	27563306	Chen C., E Z., Lin H.X.	Evolution and Molecular Control of hybrid incompatibility in Plants.	Front Plant Sci	7	1208	2016		
43570	27524161	Meng D., Walsh M., Fricke W.	Rapid changes in root hydraulic conductivity and aquaporin expression in rice (Oryza sativa L.) in response to shoot removal - xylem tension as a possible signal.	Ann. Bot.			2016		
43571	27497079	Kumar A., Dixit G., Singh A.P., Dwivedi S., Srivastava S., Mishra K., Tripathi R.D.	Selenate mitigates arsenite toxicity in rice (Oryza sativa L.) by reducing arsenic uptake and ameliorates amino acid content and thiol metabolism.	Ecotoxicol. Environ. Saf.	133	350-359	2016		
43572	27573488	Nakamura S., Cui J., Zhang X., Yang F., Xu X., Sheng H., Ohtsubo K.	Comparison of eating quality and physicochemical properties between Japanese and Chinese rice cultivars.	Biosci. Biotechnol. Biochem.		1-13	2016		
43573	16040665	Yu F., Park S., Steven R Rodermel	Functional redundancy of AtFtsH metalloproteases in thylakoid membrane complexes.	Plant Physiol.	138(4)	1957-66	2005	FTSH2,FTSH4,FTSH3,FTSH6,FTSH9,FTSH8,FTSH5,FTSH1,FTSH7	OsFtsH2, FtsH2,OsFtsH4, FtsH4,OsFtsH3, FtsH3,OsFtsH6, FtsH6,OsFtsH9, FtsH9,OsFtsH8, FtsH8,OsFtsH5, FtsH5,OsFtsH1, FtsH1,OsFtsH7, FtsH7
43574	20454772	Philippe R., Courtois B., Kenneth L McNally, Mournet P., Redouane El-Malki, Marie Christine Le Paslier, Fabre D., Billot C., Brunel D., Jean-Christophe Glaszmann, This D.	Structure, allelic diversity and selection of Asr genes, candidate for drought tolerance, in Oryza sativa L. and wild relatives.	Theor. Appl. Genet.	121(4)	769-87	2010	ASR1,_,ASR5,ASR3,ASR4,ASR2	OsAsr1, OsASR3, ASR3, Asr3,OsASR2, OsASR4, Asr4, ASR2,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2,Asr3, OsASR5, OsASR1, Asr1,Asr4, OsASR6, OsASR2, Asr2,OsAsr2, OsASR4, OsASR6
43576	0	Takahiro GOTO, Tadayuki MATSUMOTO, Naruto FURUYA, Kenichi TSUCHIYA, Atsushi YOSHIMURA	Mapping of Bacterial Blight Resistance Gene Xa11 on Rice Chromosome 3	JARQ	43(3)	221-225	2009	XA11	Xa11(Xa pt), Xa11, Xapt
43577	19306571	Zhao Z., Fu Y., Yang K., Zhang Y., Yan Y., Fang R., Sun Z., Chen X.	[Cloning and function analysis of the rice small GTP-binding protein gene OsPra2].	Sheng Wu Gong Cheng Xue Bao	24(12)	2027-33	2008	_	OsRab11F1, OsPRA2, PRA2, OsPra2 
43578	20213442	Tamura W., Hidaka Y., Tabuchi M., Kojima S., Hayakawa T., SATO T., Obara M., Kojima M., Sakakibara H., Yamaya T.	Reverse genetics approach to characterize a function of NADH-glutamate synthase1 in rice plants.	Amino Acids	39(4)	1003-12	2010	ABC1,GLT2,GLT1	OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1
43579	27986805	Chen H., Tang Y., Liu J., Tan L., Jiang J., Wang M., Zhu Z., Sun X., Sun C.	Emergence of a Novel Chimeric Gene Underlying grain number in Rice.	Genetics			2016	_	GN2, GN2.1, GN2.2
43580	27965387	Fan Y., Yang J., Mathioni S.M., Yu J., Shen J., Yang X., Wang L., Zhang Q., Cai Z., Xu C., Li X., Xiao J., Meyers B.C., Zhang Q.	PMS1T, producing phased small-interfering RNAs, regulates photoperiod-sensitive male sterility in rice.	Proc. Natl. Acad. Sci. U.S.A.	113(52)	15144-15149	2016	PMS1	PMS1T
43581	27956642	Park K., Kim M.Y., Vickers M., Park J.S., Hyun Y., Okamoto T., Zilberman D., Fischer R.L., Feng X., Choi Y., Scholten S.	DNA demethylation is initiated in the central cells of Arabidopsis and rice.	Proc. Natl. Acad. Sci. U.S.A.	113(52)	15138-15143	2016		
43582	28002408	Yamaji N., Takemoto Y., Miyaji T., Mitani-Ueno N., Yoshida K.T., Ma J.F.	Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	Nature	541(7635)	92-95	2017	SULTR3;4	OsSultr3;4, OsSul3;4, OsaSULTR3;4, SPDT
43583	28028235		Correction for Chang et al., Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	Proc. Natl. Acad. Sci. U.S.A.	114(1)	E107	2017		
43584	27990147	Begum M.A., Shi X.X., Tan Y., Zhou W.W., Hannun Y., Obeid L., Mao C., Zhu Z.R.	Molecular Characterization of Rice OsLCB2a1 Gene and Functional Analysis of its Role in Insect Resistance.	Front Plant Sci	7	1789	2016	LCB2A1,LCB2A2,LCB2A3	OsLCB2a1, LCB2a1,OsLCB2a2, LCB2a2,OsLCB2a3, LCB2a3
43585	27935412	Lee D.K., Yoon S., Kim Y.S., Kim J.K.	Rice OsERF71-mediated root modification affects shoot drought tolerance.	Plant Signal Behav		0	2016	ERF71,CCR1	OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsCCR1
43586	28039904	Peng C., Liang X., Liu E.E., Zhang J.J., Peng X.X.	The OCS-regulated oxalate and its distinct effects on resistance to bacterial blight and Al toxicity in rice.	Plant Biol (Stuttg)			2016	_	OsAAE3, AAE3, OsOCS, OCS 
43587	27992560	Qin H., Wang Y., Wang J., Liu H., Zhao H., Deng Z., Zhang Z., Huang R., Zhang Z.	Knocking Down the Expression of GMPase Gene OsVTC1-1 Decreases salt tolerance of Rice at Seedling and Reproductive Stages.	PLoS ONE	11(12)	e0168650	2016	_	OsMPG1, MPG1, OsVTC1-1, VTC1-1
43588	28013008	Malekzadeh R., Shahpiri A.	Independent metal-thiolate cluster formation in C-terminal Cys-rich region of a rice type 1 metallothionein isoform.	Int. J. Biol. Macromol.	96	436-441	2016		
43589	27917884	Wang M., Lu X., Xu G., Yin X., Cui Y., Huang L., Rocha P.S., Xia X.	OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice.	Sci Rep	6	38157	2016	SGL	OsSGL
43590	27940269	Chen Z., Chen M., Jiang M.	Hydrogen sulfide alleviates mercury toxicity by sequestering it in roots or regulating reactive oxygen species productions in rice seedlings.	Plant Physiol. Biochem.	111	179-192	2016		
43591	28025520	You M.K., Kim J.H., Lee Y.J., Jeong Y.S., Ha S.H.	Plastoglobule-Targeting Competence of a Putative Transit Peptide Sequence from Rice Phytoene Synthase 2 in Plastids.	Int J Mol Sci	18(1)		2016	PSY2	PSY2, OsPSY2
43592	28000793	Singh A., Kumar P., Gautam V., Rengasamy B., Adhikari B., Udayakumar M., Sarkar A.K.	Root transcriptome of two contrasting indica rice cultivars uncovers regulators of root development and physiological responses.	Sci Rep	6	39266	2016		
43593	27907176	Kim I.S., Kim Y.S., Kim Y.H., Park A.K., Kim H.W., Lee J.H., Yoon H.S.	Correction: Potential Application of the Oryza sativa Monodehydroascorbate Reductase Gene (OsMDHAR) to Improve the Stress Tolerance and Fermentative Capacity of Saccharomyces cerevisiae.	PLoS ONE	11(12)	e0167843	2016		
43594	28066457	Dai Z., Wang J., Zhu M., Miao X., Shi Z.	OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.	Front Plant Sci	7	1891	2016	LHS1,MIR172C,MIR172D,IDS1,MIR172A,AP2/EREBP59,RSR1,SNB,MIR172B,SHAT1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsmiR172c, miR172c, osa-MIR172c, Osa-miR172c ,OsmiR172d, miR172d, osa-MIR172d osa-miR172d osa-miR172d-3p osa-miR172d-5p, Osa-miR172d,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2 ,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,AP2/EREBP#059, AP2-4,AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1,AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB,OsmiR172b, miR172b, osa-MIR172b, Osa-miR172b ,SHAT1, AP2/EREBP#043, AP2/EREBP43, AP2-5
43595	28029278	Jang S.	A novel trimeric complex in plant cells that contributes to the lamina inclination of rice.	Plant Signal Behav		0	2016	_,ILI5,_	OsbHLH081, bHLH081, OsBC1, BC1,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,LO9-177 
43596	28013072	Wang X., Jiang D., Shi J., Yang D.	Expression of alpha-1,6-fucosyltransferase (FUT8) in rice grain and immunogenicity evaluation of plant-specific glycans.	J. Biotechnol.	242	111-121	2017		
43597	27913740	Wang X., Guan Y., Zhang D., Dong X., Tian L., Qu L.Q.	A beta-ketoacyl-CoA synthase is Involved in Rice Leaf Cuticular Wax Synthesis and requires a CER2-LIKE Protein as a Cofactor.	Plant Physiol.			2016	_,_	OsCER2, CER2,CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6 
43598	27924841	Lu G., Zhang T., He Y., Zhou G.	Virus altered rice attractiveness to planthoppers is mediated by volatiles and related to virus titre and expression of defence and volatile-biosynthesis genes.	Sci Rep	6	38581	2016	AOS1,_,ACS2,_,_,HPL3	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,ICS1, OsICS1, OsICS, ICS,OsACS2, Os-ACS2,OsTPS3, TPS3, OsLIS, LIS,OsTPS29, TPS29, OsCAS, CAS, OsTPS3, TPS3,OsHPL3, CYP74B2
43599	28000033	Bhatnagar N., Min M.K., Choi E.H., Kim N., Moon S.J., Yoon I., Kwon T., Jung K.H., Kim B.G.	The protein phosphatase 2C clade A protein OsPP2C51 positively regulates seed germination by directly inactivating OsbZIP10.	Plant Mol. Biol.			2016	SAPK2,_,ABI5,_	OsSAPK2,OsPP2C51, PP2C51, OsPP79,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11
43600	27864513	Chang Z., Chen Z., Wang N., Xie G., Lu J., Yan W., Zhou J., Tang X., Deng X.W.	Construction of a male sterility system for hybrid rice breeding and seed production using a nuclear male sterility gene.	Proc. Natl. Acad. Sci. U.S.A.	113(49)	14145-14150	2016	NP1 	OS-ACE, OsNP1 
43601	27803308	Wang Y., Liu F., Ren Y., Wang Y., Liu X., Long W., Wang D., Zhu J., Zhu X., Jing R., Wu M., Hao Y., Jiang L., Wang C., Wang H., Bao Y., Wan J.	GOLGI TRANSPORT 1B Regulates Protein Export from the Endoplasmic Reticulum in Rice Endosperm Cells.	Plant Cell	28(11)	2850-2865	2016	_,GPA4 ,SAR1A	Sec23c,GOT1B, GLUP2 ,OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a
43602	27889517	Nguyen H.P., Jeong H.Y., Jeon S.H., Kim D., Lee C.	Rice pectin methylesterase inhibitor28 (OsPMEI28) encodes a functional PMEI and its overexpression results in a dwarf phenotype through increased pectin methylesterification levels.	J. Plant Physiol.	208	17-25	2017		
43603	27878661	Ruan W., Guo M., Wu P., Yi K.	Phosphate starvation induced OsPHR4 mediates Pi-signaling and homeostasis in rice.	Plant Mol. Biol.			2016	MIR399J,PHR1,PHR2,PT2,miR827,PI1,PHR4,PT10,_,IPS1,LTN1,PHR3	OsmiR399j, osa-miR399j, osa-MIR399j, Os-miR399j, miR399j,OsPHR1,OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2,miR827a, OsmiR827a, miR827, osa-miR827, osa-MIR827, OsMiR827, miR827b, osa-miR827b, osa-MIR827b,OsIPS2, IPS2, OsPI1,OsPHR4, Os-PHR4,OsPT10, PHT1-10, OsPht1;10,OsSPX1, SPX1,OsIPS1, IPS1,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsPHR3, Os-PHR3, OsPHL1, PHL1 
43604	27627618	Wang L., Yu C., Xu S., Zhu Y., Huang W.	OsDi19-4 acts downstream of OsCDPK14 to positively regulate ABA response in rice.	Plant Cell Environ.	39(12)	2740-2753	2016	_,ASPG1 ,CDPK24,NAC103	OsDi19-4, Di19-4,OsASPG1 ,OsCDPK24, OsCPK24, OsCDPK14,ONAC103, OsNAC18 , NAC18
43605	27875019	Xu R., Qin R., Li H., Li D., Li L., Wei P., Yang J.	Generation of targeted mutant rice using a CRISPR-Cpf1 system.	Plant Biotechnol. J.			2016		
43606	27897241	Jalmi S.K., Sinha A.K.	Functional Involvement of a Mitogen Activated Protein Kinase Module, OsMKK3-OsMPK7-OsWRK30 in Mediating Resistance against Xanthomonas oryzae in Rice.	Sci Rep	6	37974	2016	MAPK6,MPK6,MKK1,MKK3,SMG1,MAPK4,MKK6,MSRMK2,WRKY30	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsMPK6, OsDR6, OsMPK4,OsMKK1, OsMEK2,OsMKK3,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsMKK6, OsMEK1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsWRKY30
43607	27965699	Ma X., Feng F., Wei H., Mei H., Xu K., Chen S., Li T., Liang X., Liu H., Luo L.	Genome-Wide Association Study for plant height and grain yield in Rice under Contrasting Moisture Regimes.	Front Plant Sci	7	1801	2016	GNA1,GH3-2,RLK5 ,SAP11,_,GA2OX9,GA2OX3,CYP51G3,SD1	OsGNA1,OsGH3-2, OsGH3.2, GH3.2,OsRLK5 ,OsDOG, OsSAP11, DOG,OsRRMh, RRMh,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,OsCYP51G3,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
43608	27803124	Xu J.J., Zhang X.F., Xue H.W.	Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.	J. Exp. Bot.	67(22)	6399-6411	2016	HAP5L,ERF115,HAP5K,HAP3K	OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123,OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41
43609	27813190	Betterle N., Poudyal R.S., Rosa A., Wu G., Bassi R., Lee C.H.	The STN8 kinase-PBCP phosphatase system is responsible for high-light-induced reversible phosphorylation of the PSII inner antenna subunit CP29 in rice.	Plant J.			2016	_,STN8,STN7,_	CP29, OsCP29, LHCB4, Lhcb4 ,OsSTN8,OsSTN7,OsPP2C01, PP2C01, OsPP2C1, PP2C1, OsPP1, OsPBCP, PBCP 
43610	27892643	Lee D.K., Chung P.J., Jeong J.S., Jang G., Bang S.W., Jung H., Kim Y.S., Ha S.H., Choi Y.D., Kim J.K.	The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.	Plant Biotechnol. J.			2016	NAC6	OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
43611	27878652	Hu L., He H., Zhu C., Peng X., Fu J., He X., Chen X., Ouyang L., Bian J., Liu S.	Genome-wide identification and phylogenetic analysis of the chalcone synthase gene family in rice.	J. Plant Res.	130(1)	95-105	2017	PKS11,PKS3,PKS18,PKS17,PKS23,PKS4,PKS10,_,_,PKS14,PKS16,PKS9,PKS1 ,_,LAP6,PKS15,PKS7,PKS22,PKS20,PKS19,PKS24,PKS27,PKS13,CHS,_,PKS25,PKS5	OsPKS11,OsPKS03, PKS03, OsPKS3,OsPKS18,OsPKS17,OsPKS23,OsPKS04, PKS04, OsPKS4,OsPKS10, OsPKS2, PKS2,CHS, OsPKS02, OsPKS2, PKS02, PKS2,CHS, OsPKS12, PKS12,OsPKS14,OsPKS16,OsPKS09, PKS09, OsPKS9,OsPKS01, PKS01, OsPKS1 ,CHS, OsPKS06, OsPKS6, PKS06, PKS6,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6,OsPKS15,OsPKS07, PKS07, OsPKS7,OsPKS22,OsPKS20,OsPKS19,OsPKS24,OsPKS27,OsPKS13,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsCHS2, CHS2, OsPKS08, OsPKS8, PKS08, PKS8,OsPKS25,OsPKS05, PKS05, OsPKS5
43612	27888467	Peng X., Wang H., Jang J.C., Xiao T., He H., Jiang D., Tang X.	OsWRKY80-OsWRKY4 Module as a Positive Regulatory Circuit in Rice Resistance Against Rhizoctonia solani.	Rice (N Y)	9(1)	63	2016	WRKY80,WRKY4	OsWRKY80,OsWRKY4, WRKY122, OsWRKY122
43613	27832344	Li L., Ye T., Gao X., Chen R., Xu J., Xie C., Zhu J., Deng X., Wang P., Xu Z.	Molecular characterization and functional analysis of the OsPsbR gene family in rice.	Mol. Genet. Genomics			2016	_,_,PSBR	OsPsbR3, PsbR3,OsPsbR2, PsbR2,PsbR, OsPsbR1, PsbR1 
43614	27879391	Jang S., An G., Li H.Y.	Rice Leaf Angle and grain size.Are Affected by the OsBUL1 Transcriptional Activator Complex.	Plant Physiol.	173(1)	688-702	2017	_,_,ILI3,ILI5,_,_	LO9-177 ,Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsBUL3, BUL3, OsbHLH174, bHLH174 ,OsbHLH081, bHLH081, OsBC1, BC1
43615	27820840	Huang A., Sang Y., Sun W., Fu Y., Yang Z.	Transcriptomic Analysis of Responses to Imbalanced Carbon: Nitrogen Availabilities in Rice Seedlings.	PLoS ONE	11(11)	e0165732	2016		
43616	27864442	Gao Y., He C., Zhang D., Liu X., Xu Z., Tian Y., Liu X.H., Zang S., Pauly M., Zhou Y., Zhang B.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.	Plant Physiol.	173(1)	470-481	2017	_,_,_,_,_,_,_,_,_,_,_,_,_,_,XOAT14,_,_,_,XOAT6,XOAT3,XOAT10,_,_,XOAT1,XOAT12,XOAT7,_,_,_,_,_,_,_,_,_,_,XOAT13,_,_,_,XOAT5,_,_,_,XOAT11,_,XOAT9,_,_,XOAT8,_,_,_,_,_,_,_,XOAT4,_,_,_,_,_,_,_,XOAT2	OsTBL26, TBL26,OsTBL57, TBL57,OsTBL39, TBL39,OsTBL50, TBL50,OsTBL27, TBL27,OsTBL36, TBL36,OsTBL47, TBL47,OsTBL31, TBL31,OsTBL33, TBL33,OsTBL30, TBL30,OsTBL28, TBL28,OsTBL29, TBL29,OsTBL40, TBL40,OsTBL18, TBL18,OsTBL3, TBL3, OsXOAT14,OsTBL51, TBL51,OsTBL22, TBL22,OsTBL48, TBL48,OsTBL15, TBL15, OsXOAT6,OsTBL9, TBL9, OsXOAT3,OsTBL5, TBL5, OsXOAT10,OsTBL43, TBL43,OsTBL42, TBL42,OsTBL12, TBL12, OsXOAT1,OsTBL2, TBL2, OsXOAT12,OsTBL14, TBL14, OsXOAT7,OsTBL20, TBL20,OsTBL17, TBL17,OsTBL25, TBL25,OsTBL55, TBL55,OsTBL58, TBL58,OsTBL64, TBL64,OsTBL63, TBL63,OsTBL61, TBL61,OsTBL34, TBL34,OsTBL62, TBL62,OsTBL1, TBL1, OsXOAT13,OsTBL21, TBL21,OsTBL56, TBL56,OsTBL45, TBL45,OsTBL13, TBL13, OsXOAT5,OsTBL41, TBL41,OsTBL24, TBL24,OsTBL52, TBL52,OsTBL6, TBL6, OsXOAT11,OsTBL59, TBL59,OsTBL4, TBL4, OsXOAT9,OsTBL65, TBL65,OsTBL66, TBL66,OsTBL8, TBL8, OsXOAT8,OsTBL23, TBL23,OsTBL16, TBL16,OsTBL7, TBL7,OsTBL35, TBL35,OsTBL53, TBL53,OsTBL54, TBL54,OsTBL49, TBL49,OsTBL10, TBL10, OsXOAT4,OsTBL46, TBL46,OsTBL60, TBL60,OsTBL37, TBL37,OsTBL19, TBL19,OsTBL44, TBL44,OsTBL38, TBL38,OsTBL32, TBL32,OsTBL11, TBL11, OsXOAT2
43617	27829023	Liu H., Dong S., Sun D., Liu W., Gu F., Liu Y., Guo T., Wang H., Wang J., Chen Z.	CONSTANS-Like 9 (OsCOL9) Interacts with Receptor for Activated C-Kinase 1(OsRACK1) to Regulate Blast Resistance through Salicylic Acid and Ethylene Signaling Pathways.	PLoS ONE	11(11)	e0166249	2016	ACO1,_,ACS1,NH1,PR1A,WRKY45,PR1B,RACK1	OsACO1, ACO,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,ACC1*, OsACS1, Os-ACS1, ACC1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsWRKY45,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A
43618	27871243	Li Y., Li D., Guo Z., Shi Q., Xiong S., Zhang C., Zhu J., Yang Z.	OsACOS12, an orthologue of Arabidopsis acyl-CoA synthetase5, plays an important role in pollen exine formation and anther development in rice.	BMC Plant Biol.	16(1)	256	2016	_	OsACS9, ACS9, 4CL4, OsACOS12, ACOS12 
43619	27715009	Wetterhorn K.M., Newmister S.A., Caniza R.K., Busman M., McCormick S.P., Berthiller F., Adam G., Rayment I.	Crystal Structure of Os79 (Os04g0206600) from Oryza sativa: A UDP-glucosyltransferase Involved in the Detoxification of Deoxynivalenol.	Biochemistry	55(44)	6175-6186	2016	_	UDP-GT, Os79 
43620	27794118	Ordonio R.L., Matsuoka M.	Increasing resistant starch content in rice for better consumer health.	Proc. Natl. Acad. Sci. U.S.A.			2016	FLO5,WX1	OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
43621	27791169	Zhao Y., Huang J., Wang Z., Jing S., Wang Y., Ouyang Y., Cai B., Xin X.F., Liu X., Zhang C., Pan Y., Ma R., Li Q., Jiang W., Zeng Y., Shangguan X., Wang H., Du B., Zhu L., Xu X., Feng Y.Q., He S.Y., Chen R., Zhang Q., He G.	Allelic diversity in an NLR gene BPH9 enables rice to combat planthopper variation.	Proc. Natl. Acad. Sci. U.S.A.			2016	BPH1,BPH9,BPH10,BPH7,BPH21	Bph1,Bph9, BPH9/26,Bph10(t)*, Bph10,bph7,Bph21(t)
43622	27661977	Athwal N.S., Alagurajan J., Andreotti A.H., Hargrove M.S.	Role of Reversible Histidine Coordination in Hydroxylamine Reduction by Plant Hemoglobins (Phytoglobins).	Biochemistry			2016		
43623	27742800	Hou C.Y., Lee W.C., Chou H.C., Chen A.P., Chou S.J., Chen H.M.	Global Analysis of Truncated RNA Ends Reveals New Insights into Ribosome Stalling in Plants.	Plant Cell	28(10)	2398-2416	2016		
43624	27791174	Zhou H., Wang L., Liu G., Meng X., Jing Y., Shu X., Kong X., Sun J., Yu H., Smith S.M., Wu D., Li J.	Critical roles of soluble starch synthase SSIIIa and granule-bound starch synthase Waxy in synthesizing resistant starch in rice.	Proc. Natl. Acad. Sci. U.S.A.			2016	WX1,FLO5	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5
43625	27833629	Ling F., Zhou F., Chen H., Lin Y.	Development of Marker-Free Insect-Resistant Indica Rice by Agrobacterium tumefaciens-Mediated Co-transformation.	Front Plant Sci	7	1608	2016		
43626	27718311	He X., Li L., Xu H., Xi J., Cao X., Xu H., Rong S., Dong Y., Wang C., Chen R., Xu J., Gao X., Xu Z.	A rice jacalin-related mannose-binding lectin gene, OsJRL, enhances Escherichia coli viability under high salinity stress and improves salinity tolerance of rice.	Plant Biol (Stuttg)			2016	LEA24,DREB1A,HKT7,HKT6,LEA3-1,DHN1,ERF42,HKT8,SALT	OsLEA24, WSI724,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsHKT7, OsHKT1;4, HKT1;4,OsHKT6, OsHKT1;3, HKT1;3,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1
43627	27797431	Kaur C., Tripathi A.K., Nutan K.K., Sharma S., Ghosh A., Tripathi J.K., Pareek A., Singla-Pareek SL., Sopory S.K.	A nucleus-localized rice glyoxalase I enzyme, OsGLYI-8 functions in the detoxification of methylglyoxal in the nucleus.	Plant J.			2016	GLYI8	OsGLYI8, OsGLYI-8, GLYI-8
43628	27702843	Shi S., Wang T., Chen Z., Tang Z., Wu Z., Salt D.E., Chao D.Y., Zhao F.J.	OsHAC1;1 and OsHAC1;2 Function as Arsenate Reductases and Regulate Arsenic Accumulation.	Plant Physiol.	172(3)	1708-1719	2016	STR6,STR5	OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2,OsStr5, OsHAC1;1, HAC1;1 
43629	27835768	Tominaga J., Mizutani H., Horikawa D., Nakahara Y., Takami T., Sakamoto W., Sakamoto A., Shimada H.	Rice CYO1, an ortholog of Arabidopsis thaliana cotyledon chloroplast biogenesis factor AtCYO1, is expressed in leaves and involved in photosynthetic performance.	J. Plant Physiol.	207	78-83	2016	CYO1	OsCYO1 
43630	27742884	Mitani-Ueno N., Yamaji N., Ma J.F.	High Silicon Accumulation in the Shoot is Required for Down-Regulating the Expression of Si Transporter Genes in Rice.	Plant Cell Physiol.	57(12)	2510-2518	2016	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
43631	27701783	Yang C., Li W., Cao J., Meng F., Yu Y., Huang J., Jiang L., Liu M., Zhang Z., Chen X., Miyamoto K., Yamane H., Zhang J., Chen S., Liu J.	Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice.	Plant J.			2016	KS7,OPR4,KS8,_,PR1A,EIN2,OPR6,JAR1,OPR5,RBOHB,ACS2,RBOHA	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsOPR4, OsOPR10, OsOPR06-3,OsKS8, KS8, KSL8, OsKSL8, DTC2, OsDTC2, OsDTC2/OsKS8, OsTPS32,EIL1, OsEIL1, MHZ6/OsEIL1, MHZ6,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsOPR6, OsOPR4, OsOPR06-1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsOPR5, OsOPR6, OsOPR06-2,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,OsACS2, Os-ACS2,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2
43632	27714489	Chou W.L., Chung Y.L., Fang J.C., Lu C.A.	Novel interaction between CCR4 and CAF1 in rice CCR4-NOT deadenylase complex.	Plant Mol. Biol.			2016	_,CCR4A,_,CCR4B,_,_	OsNOT1, NOT1,OsCCR4a,OsCAF1G, CAF1G, OsCAF1-13,OsCCR4b,OsCAF1A, CAF1A, OsCAF1-12,OsCAF1H, CAF1H, OsCAF1-1
43633	27766460	Almeida D.M., Gregorio G.B., Oliveira M.M., Saibo N.J.	Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.	Plant Mol. Biol.			2016	_,_,_,_,_,NHX1	,PCF2, OsPCF2,,OsCPP5, CPP5,,OsNHX1
43634	27757415	Karlen S.D., Zhang C., Peck M.L., Smith R.A., Padmakshan D., Helmich K.E., Free H.C., Lee S., Smith B.G., Lu F., Sedbrook J.C., Sibout R., Grabber J.H., Runge T.M., Mysore K.S., Harris P.J., Bartley L.E., Ralph J.	Monolignol ferulate conjugates are naturally incorporated into plant lignins.	Sci Adv	2(10)	e1600393	2016	AT5,_,AT10	OsAT5, OsAt5, OsFMT1, FMT1,OsAT4, OsAt4, AT4, PMT, OsPMT, OsAT4/PMT, OsAT4/PMT1, OsAT4/OsPMT1, OsPMT1,OsAT10, OsAt10
43635	27730518	Yu N., Liang Y., Peng X., Hou X.	Molecular and Bioinformatic Characterization of the Rice ROOT UV-B SENSITIVE Gene Family.	Rice (N Y)	9(1)	55	2016	RUS5,RUS6A,RUS1,RUS2,RUS6B,RUS3	OsRUS5,OsRUS6A,OsRUS1,OsRUS2, OsRUS2.1, OsRUS2.2,OsRUS6B,OsRUS3
43636	27744299	Yokosho K., Yamaji N., Fujii-Kashino M., Ma J.F.	Retrotransposon-Mediated Aluminum Tolerance through Enhanced Expression of the Citrate Transporter OsFRDL4.	Plant Physiol.	172(4)	2327-2336	2016	ART1,_	ART1, STAR3,OsFRDL4, FRDL4, MATE
43637	27826301	Hu R., Qiu D., Chen Y., Miller A.J., Fan X., Pan X., Zhang M.	Knock-Down of a Tonoplast Localized Low-Affinity Nitrate Transporter OsNPF7.2 Affects Rice Growth under High Nitrate Supply.	Front Plant Sci	7	1529	2016	_	OsNPF7.2, NPF7.2
43638	27694845	Fang C., Chen W., Li C., Jian X., Li Y., Lin H., Lin W.	Methyl-CpG binding domain protein acts to regulate the repair of cyclobutane pyrimidine dimers on rice DNA.	Sci Rep	6	34569	2016	_,_,_,_,_,_,_,_	,,qUVR-10, OsPHR, OsCPD, CPD,OsCRY1a, OsCRY1, CRY1a, CRY2 ,PHR2,,OsMeCP, MeCP,OsCRY2, CRY2
43639	27718117	Li X., Han H., Chen M., Yang W., Liu L., Li N., Ding X., Chu Z.	Overexpression of OsDT11, which encodes a novel cysteine-rich peptide, enhances drought tolerance and increases ABA concentration in rice.	Plant Mol. Biol.			2016	DT11,_,BZIP23	OsDT11,Os2H16, 2H16,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
43640	27702997	Fei Q., Yang L., Liang W., Zhang D., Meyers B.C.	Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways.	J. Exp. Bot.	67(21)	6037-6049	2016	AGO18,AGO1D,MEL1,_,MSP1,_	OsAGO18,OsAGO1d, AGO1d,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsAGO2b, AGO2b,Msp1, OsMSP1,OsTDL1A, TDL1A, MIL2, OsTDL1A/MIL2, OsTDL1a 
43641	27708383	Soda N., Sharan A., Gupta B.K., Singla-Pareek SL., Pareek A.	Evidence for nuclear interaction of a cytoskeleton protein (OsIFL) with metallothionein and its role in salinity stress tolerance.	Sci Rep	6	34762	2016	_,_,AHA7,MTI4A,IF	TIP1,BIP131,OSA7, OsA7, osAHA7, AHA7, PAA-Hwa,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsIFL, IFL, OsIF
43642	27716044	Cao Y., Ai H., Jain A., Wu X., Zhang L., Pei W., Chen A., Xu G., Sun S.	Identification and expression analysis of OsLPR family revealed the potential roles of OsLPR3 and 5 in maintaining phosphate homeostasis in rice.	BMC Plant Biol.	16(1)	210	2016	LPR2,_,LTN1,_,SIZ1,LPR1 ,LPR3,LPR4	OsLPR2,OsSTA2, STA2, OsLPR5, LPR5,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsSPX1, SPX1,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 ,OsLPR1 ,OsLPR3,OsLPR4
43643	27833617	Daware A., Das S., Srivastava R., Badoni S., Singh A.K., Agarwal P., Parida S.K., Tyagi A.K.	An Efficient Strategy Combining SSR Markers- and Advanced QTL-seq-driven QTL Mapping Unravels Candidate Genes Regulating grain weight in Rice.	Front Plant Sci	7	1535	2016	SCP27,_	OsEnS-75, OsSCP27, OsSCP28, SCP28,OsXIP, XIP
43644	27771249	Wu Y., Luo L., Chen L., Tao X., Huang M., Wang H., Chen Z., Xiao W.	Chromosome mapping, molecular cloning and expression analysis of a novel gene response for leaf width in rice.	Biochem. Biophys. Res. Commun.	480(3)	394-401	2016	NAL11	OsDjC58, DjC58
43645	27601671	Ji J., Tang D., Shen Y., Xue Z., Wang H., Shi W., Zhang C., Du G., Li Y., Cheng Z.	P31comet, a member of the synaptonemal complex, participates in meiotic DSB formation in rice.	Proc. Natl. Acad. Sci. U.S.A.	113(38)	10577-82	2016	ZEP1,_,RAD51C,COM1,_	OsZEP1,CRC1,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsCOM1,P31comet, OsBVF1, BVF1 
43646	27602511	Huang X., Yang S., Gong J., Zhao Q., Feng Q., Zhan Q., Zhao Y., Li W., Cheng B., Xia J., Chen N., Huang T., Zhang L., Fan D., Chen J., Zhou C., Lu Y., Weng Q., Han B.	Genomic architecture of heterosis for yield traits in rice.	Nature	537(7622)	629-633	2016	SPK,HD3A,WFP,HD5,LAX1,TMS5	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
43647	27634315	Jin J., Hua L., Zhu Z., Tan L., Zhao X., Zhang W., Liu F., Fu Y., Cai H., Sun X., Gu P., Xie D., Sun C.	GAD1 Encodes a Secreted Peptide That Regulates Grain Number, Grain Length, and Awn Development in Rice Domestication.	Plant Cell	28(10)	2453-2463	2016	AN1,GN1A,RAE2 ,LABA1,DST	An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2,LOGL6, OsLOGL6, An-2,OsDST
43648	27655841	Lockhart J.	Field of Genes: Uncovering EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function during High-Temperature and Drought Stress.	Plant Cell	28(10)	2346-2347	2016		
43649	27663737	Li D., Huang Z., Song S., Xin Y., Mao D., Lv Q., Zhou M., Tian D., Tang M., Wu Q., Liu X., Chen T., Song X., Fu X., Zhao B., Liang C., Li A., Liu G., Li S., Hu S., Cao X., Yu J., Yuan L., Chen C., Zhu L.	Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase.	Proc. Natl. Acad. Sci. U.S.A.	113(41)	E6026-E6035	2016	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
43650	27655842	Wilkins O., Hafemeister C., Plessis A., Holloway-Phillips MM., Pham G.M., Nicotra A.B., Gregorio G.B., Jagadish S.V., Septiningsih E.M., Bonneau R., Purugganan M.	EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments.	Plant Cell	28(10)	2365-2384	2016		
43651	27618555	Zhu X., Yin J., Liang S., Liang R., Zhou X., Chen Z., Zhao W., Wang J., Li W., He M., Yuan C., Miyamoto K., Ma B., Wang J., Qin P., Chen W., Wang Y., Wang W., Wu X., Yamane H., Zhu L., Li S., Chen X.	The Multivesicular Bodies (MVBs)-Localized AAA ATPase LRD6-6 Inhibits Immunity and Cell Death Likely through Regulating MVBs-Mediated Vesicular Trafficking in Rice.	PLoS Genet.	12(9)	e1006311	2016	_,_,_,LRD6-6 	OsSNF7, SNF7, OsSnf7, Snf7 ,OsSKD1, SKD1,OsVPS2, VPS2,LMR
43652	27624698	Li Y.Y., Shen A., Xiong W., Sun Q.L., Luo Q., Song T., Li Z.L., Luan W.J.	Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.	Rice (N Y)	9(1)	46	2016	RBCS,FGL,_,YAB5,YAB1,YAB3,RBCL,YAB6,YGL10,YAB4,HB4,SH1,CAB1R	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1,OsYAB1, FIL1, osFIL1,OsYAB3, OsYAB4, TOB3,rbcL, rbcA, OsrbcL,OsYAB6, OsYAB5,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsYAB4, OsYAB7, TOB2, ,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3,YAB2, OsYAB2, OsSh1, Sh1, OsFIL2, OsSH1, Osh1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b
43653	27620492	Liu H., Gu F., Dong S., Liu W., Wang H., Chen Z., Wang J.	CONSTANS-like 9 (COL9) delays the flowering time in Oryza sativa by repressing the Ehd1 pathway.	Biochem. Biophys. Res. Commun.	479(2)	173-178	2016	HD3A,_,_,RFT1,EF1,RACK1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,ARP1,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A
43654	27733860	Moreno-Moyano LT., Bonneau J.P., S?nchez-Palacios JT., Tohme J., Johnson A.A.	Association of Increased Grain Iron and Zinc Concentrations with Agro-morphological Traits of Biofortified Rice.	Front Plant Sci	7	1463	2016	NAS2,NAS1	OsNAS2,OsNAS1
43655	27588462	Lee S.K., Eom J.S., Hwang S.K., Shin D., An G., Okita T.W., Jeon J.S.	plastidic phosphoglucomutase and ADP-glucose pyrophosphorylase mutants impair starch synthesis in rice pollen grains and cause male sterility.	J. Exp. Bot.	67(18)	5557-5569	2016	_,AGPL4,_	OspPGM, pPGM ,OsAGPL4, APL4, OsAPL4, OsSTA193,PFP, OscPGM, cPGM
43656	27582185	Hwang J.E., Jang D.S., Lee K.J., Ahn J.W., Kim S.H., Kang S.Y., Kim D.S., Kim J.B.	Identification of gamma ray irradiation-induced mutations in membrane transport genes in a rice population by TILLING.	Genes Genet. Syst.			2016	HKT6,HAK11,NSCC2,SOS1,_	OsHKT6, OsHKT1;3, HKT1;3,OsHAK11,OsNSCC2,OsSOS1, OsNHA1,OsAKT1, Os-AKT1, AKT1
43657	27639642	Zhang Y., Zou B., Lu S., Ding Y., Liu H., Hua J.	Expression and promoter analysis of the OsHSP16.9C gene in rice.	Biochem. Biophys. Res. Commun.	479(2)	260-265	2016	HSP16.9C	Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C
43658	27592839	Liu X., Li X., Zhang C., Dai C., Zhou J., Ren C., Zhang J.	phosphoenolpyruvate carboxylase regulation in C4-PEPC-expressing transgenic rice during early responses to drought stress.	Physiol Plant			2016	OSK1,PPCK1,OSK4,PPCK2,OSK3	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a,OsPPCK1,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b,OsPPCK2, OsPPCK2L, OsPPCK2S,osk3, OsATG1b, ATG1B, OSK5, osk5, OSK35, SnRK1b, OsK35 
43659	27695459	Cui P., Liu H., Islam F., Li L., Farooq M.A., Ruan S., Zhou W.	OsPEX11, a Peroxisomal Biogenesis Factor 11, Contributes to Salt Stress Tolerance in Oryza sativa.	Front Plant Sci	7	1357	2016	HKT1,SOS1,_,LRT2,_,PEX11-3,_,NHX1,HKT8	OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1,OsSOS1, OsNHA1,OsLti6a, Lti6a, OsLTI6A, OsRCI2-10,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsLti6b, Lti6b, OsLTI6B, OsRCI2-6,OsPEX11-3, OsPEX11 ,OsAKT1, Os-AKT1, AKT1,OsNHX1,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
43660	27703462	Wang W., Xu M., Liu X., Tu J.	The Rice Eukaryotic translation initiation factor 3 Subunit e (OseIF3e) Influences Organ Size and pollen Maturation.	Front Plant Sci	7	1399	2016	EIF3H,EIF6,EIF3D,KRP4,EIF3B,EIF3K,KRP1,EIF3E,EIF3F,KRP5	eIF-3h, OseIF3h,eIF-6, OseIF6,eIF-3d, OseIF3d,OsiICK6, Orysa;KRP4, OrysaICK6, Orysa;ICK6, OsKRP4, OsICK6, ICK6,eIF-3b, OseIF3b,eIF-3k, OseIF3k,OsiICK1, Orysa;KRP1, OrysaICK1, Orysa;ICK1, CDKI, OsICK1, ICK1 ,eIF-3e, OseIF3e,eIF-3f, OseIF3f,OsiICK5, Orysa;KRP5, OrysaICK5, Orysa;ICK5, OsKRP5, OsICK5, ICK5 
43661	27621422	Duan L., Xiao W., Xia F., Liu H., Xiao J., Li X., Wang S.	Two Different Transcripts of a LAMMER Kinase Gene Play Opposite Roles in disease resistance.	Plant Physiol.	172(3)	1959-1972	2016	_,_,PR1B,AOS2	OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsAOS2, CYP74A2, OsAOS, OsAOS1
43662	27611904	Vemanna R.S., Vennapusa A.R., Easwaran M., Chandrashekar B.K., Rao H., Ghanti K., Sudhakar C., Mysore K.S., Udayakumar M.	Aldo-keto reductase enzymes detoxify glyphosate and improve herbicide resistance in plants.	Plant Biotechnol. J.			2016	ARK1,AKR3	OsARK1,OsAKR3, OsALR1, ALR1 
43663	27663411	Yu J., Meng Z., Liang W., Behera S., Kudla J., Tucker M.R., Luo Z., Chen M., Xu D., Zhao G., Wang J., Zhang S., Kim Y.J., Zhang D.	A Rice Ca2+ binding protein Is Required for Tapetum Function and pollen Formation.	Plant Physiol.	172(3)	1772-1786	2016	CYP703A3,ABCG15,DEX1,_,OSC6,CYP704B2	OsCYP703A3,OsABCG15, PDA, PDA1, OsABCG15/PDA1,Os DEX1, OsDEX1,OsMS2, MS2, OsDPW, DPW, DPW1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsCYP704B2
43664	27622591	Zhang Z., Cui X., Wang Y., Wu J., Gu X., Lu T.	The RNA Editing Factor wsp1 Is Essential for?Chloroplast Development in Rice.	Mol Plant	10(1)	86-98	2017	_,RPOB,ST1,3'RPS12,PSBA,RBCL,PSAA,RPOTP,V2,WSP1,RBCS,NDHA	cp rpl13, cp RPL13, WLP1, RPL13,rpoB, RpoB, Rpobeta,st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL,3'rps12, 3'-rps12, rps12,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,rbcL, rbcA, OsrbcL,PsaA, psaA, PsAA1,OsRpo Tp, OsRpoTp, NEP, RpoTp,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,ndhA
43665	27669230	Li L., Xu X., Chen C., Shen Z.	Genome-Wide Characterization and Expression Analysis of the Germin-Like Protein Family in Rice and Arabidopsis.	Int J Mol Sci	17(10)		2016	GLP3-8,GLP2-2,GLP8-8,GLP11-1,GLP8-9,GLP1-5,OXO1,_,GLP1-3,GLP12-3,GLP4-1,GLP1-1,GLP5-1,GLP12-4,GLP1,GLP8-12,_,GLP12-1,GLP2-4,GLP8-7,GLP2-3,GLP9-3,GLP3-9,GLP8-5,OXO2,OXO4,GLP9-1,GLP2-1,GLP8-2,OXO3,GLP8-6,GLP3-1,GLP8-3,GLP8-11,GLP8-13,GLP8-4,GLP5-2,GLP12-2,GLP3-2,GLP8-10,GLP8-1,_,GLP9-2	OsGLP3-8,OsGLP2-2,OsGLP8-8,OsGLP11-1,OsGLP8-9,OsGLP1-5, OsGLP1-4, GLP1-4,OsOxO1, OsGLP3-3, GLP3-3,GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3,OsGLP1-3, OsGLP1-2, GLP1-2,OsGLP12-3,OsGLP4-1,OsGLP1-1,OsGLP5-1,OsGLP12-4,OsGLP1, GER1, GER5, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14,OsGLP8-12,GER7, OsGLP3-7, GLP3-7,OsGLP12-1,OsGLP2-4, OsGLP2-1, GLP2-1,OsGLP8-7, GER6, OsRGLP2, RGLP2,OsGLP2-3,OsGLP9-3,OsGLP3-9,OsGLP8-5,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4,OsOxO4, OsGLP3-6, GLP3-6,OsGLP9-1,OsGLP2-1,OsGLP8-2, GER3, OsGER3, GLP16, OsEnS-117,OsOxO3, OsGLP3-5, GLP3-5,OsGLP8-6,OsGLP3-1,OsGLP8-3, GER2,OsGLP8-11, RGLP1, OsRGLP1,OsGLP8-13,OsGLP8-4, GER1. OsGer1,OsGLP5-2, OsGLP5-1, GLP5-1,OsGLP12-2,OsGLP3-2,OsGLP8-10, OsRGLP2, RGLP2,OsGLP8-1,GER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1,OsGLP9-2
43666	27677631	Sun B., Zhan X.D., Lin Z.C., Wu W.X., Yu P., Zhang Y.X., Sun L.P., Cao L.Y., Cheng S.H.	Fine mapping and candidate gene analysis of qHD5, a novel major QTL with pleiotropism for yield-related traits in rice (Oryza sativa L.).	Theor. Appl. Genet.	130(1)	247-258	2017	RSR1	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1
43667	27631432	Liu Q., Yang J., Yan S., Zhang S., Zhao J., Wang W., Yang T., Wang X., Mao X., Dong J., Zhu X., Liu B.	The Germin-like protein OsGLP2-1 enhances resistance to fungal blast and bacterial blight in rice.	Plant Mol. Biol.	92(4-5)	411-423	2016	GLP2-4	OsGLP2-4, OsGLP2-1, GLP2-1
43668	27677460	Yang X., Nian J., Xie Q., Feng J., Zhang F., Jing H., Zhang J., Dong G., Liang Y., Peng J., Wang G., Qian Q., Zuo J.	Rice Ferredoxin-Dependent Glutamate Synthase Regulates Nitrogen-Carbon Metabolomes and Is Genetically Differentiated between japonica and indica Subspecies.	Mol Plant	9(11)	1520-1534	2016	ABC1	OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
43669	27638689	Liu J., Shen J., Xu Y., Li X., Xiao J., Xiong L.	Ghd2, a CONSTANS-like gene, confers drought sensitivity through regulation of senescence in rice.	J. Exp. Bot.	67(19)	5785-5798	2016	GF14B,_,ASN1,_,GF14C,MS,NAC58,GLN1;2,GID2,SGR,NYC3,_,_,RCCR2,NYC4,_,FLO4,NYC1,RCCR1	GF14b, OsGF14b, 14-3-3b,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, BBX8, CCT09, Ghd2,OsASN1, OsAS1, AS1,OsPAO, PAO,GF14c, OsGF14c, 14-3-3c,MLS, OsMLS, OsMS,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,sgr(t), sgr, OsSGR, OsSgr,nyc3, OsNYC3, PPH,OsARID3, ARID3, SIP5 ,OsI57, I57, OsKAT1, KAT1,OsRCCR2, OsRCCR1, RCCR1,OsNYC4,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD,nyc1, OsNYC1,OsRCCR1, OsRCCR, RCCR
43670	27760723	Wang D., Liu H., Zhai G., Wang L., Shao J., Tao Y.	osptac2 encodes a pentatricopeptide repeat protein and regulates rice chloroplast development.	J Genet Genomics	43(10)	601-608	2016	pTAC2	OspTAC2
43671	27729915	Nguyen V.N., Vo K.T., Park H., Jeon J.S., Jung K.H.	A Systematic View of the MLO Family in Rice Suggests Their Novel Roles in Morphological Development, Diurnal Responses, the Light-Signaling Pathway, and Various Stress Responses.	Front Plant Sci	7	1413	2016	CML24,CML28,MLO_,MLO_,MLO_,MLO_,_,MLO_,MLO_,CML16,CAM61,MLO_,MLO_,MLO_,MLO_,MLO_,MLO_	OsCML24,OsCML28,OsMLO10, MLO10,OsMLO4, OsMLO1, MLO1,OsMLO8, MLO8,OsMLO2, OsMLO3, OsMlo2, MLO2, Mlo2, Mlo, MLO3,OsDXR, DXR, OsIspC, IspC,OsMLO4, MLO4,OsMLO12, MLO12,OsCML16,CaM61, OsCaM61, OsCML1, OsCML1d,OsMLO7, MLO7,OsMLO5, OsMLO2,OsMLO9, MLO9,OsMLO11, MLO11,OsMLO6, OsMLO1, OsMlo1, Mlo, OsMlo-1, Mlo1, MLO6,OsMLO5, MLO5
43672	27581936	Singh S., Singh A., Nandi A.K.	The rice OsSAG12-2 gene codes for a functional protease that negatively regulates stress-induced cell death.	J. Biosci.	41(3)	445-53	2016	_	CP, OsSAG12-2, SAG12-2 
43673	27795673	Yang R., Bai J., Fang J., Wang Y., Lee G., Piao Z.	A single amino acid mutation of OsSBEIIb contributes to resistant starch accumulation in rice.	Breed. Sci.	66(4)	481-489	2016	SBE3	SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb
43674	27639962	Zeng Z., Xiong F., Yu X., Gong X., Luo J., Jiang Y., Kuang H., Gao B., Niu X., Liu Y.	Overexpression of a glyoxalase gene, OsGly I, improves abiotic stress tolerance and grain yield in rice (Oryza sativa L.).	Plant Physiol. Biochem.	109	62-71	2016		
43675	27998028	Lo S.F., Ho T.D., Liu Y.L., Jiang M.J., Hsieh K.T., Chen K.T., Yu L.C., Lee M.H., Chen C.Y., Huang T.P., Kojima M., Sakakibara H., Chen L.J., Yu S.M.	Ectopic expression of specific GA2 oxidase mutants promotes yield and stress tolerance in rice.	Plant Biotechnol. J.			2016		
43676	28029738	Guseman J.M., Webb K., Srinivasan C., Dardick C.	DRO1 influences root system architecture in Arabidopsis and Prunus species.	Plant J.			2016		
43677	28034842	Hongyu Z., Xiaoyun C., Feixue H., Yiyi W., Tingkai W., Yutong L., Dingqian Y., Hongkai Z., Yao F., Xiangyang Z., Wenli L., Xianjun W.	Effects of genome doubling on expression of genes regulating grain size.in rice.	Yi Chuan	38(12)	1102-1111	2016		
43678	27940610	Sun C., Hu Z., Zheng T., Lu K., Zhao Y., Wang W., Shi J., Wang C., Lu J., Zhang D., Li Z., Wei C.	RPAN: rice pan-genome browser for ?3000 rice genomes.	Nucleic Acids Res.			2016		
43679	27904465	Kang I.J., Kang M.H., Noh T.H., Shim H.K., Shin D.B., Heu S.	Simultaneous Detection of Three Bacterial Seed-Borne Diseases in Rice Using Multiplex Polymerase Chain Reaction.	Plant Pathol. J.	32(6)	575-579	2016		
43680	28019048	Todaka D., Zhao Y., Yoshida T., Kudo M., Kidokoro S., Mizoi J., Kodaira K.S., Takebayashi Y., Kojima M., Sakakibara H., Toyooka K., Sato M., Fernie A.R., Shinozaki K., Yamaguchi-Shinozaki K.	Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions.	Plant J.			2016		
43681	28018418	Liu M., Lu S.	Plastoquinone and Ubiquinone in Plants: Biosynthesis, Physiological Function and Metabolic Engineering.	Front Plant Sci	7	1898	2016		
43682	28004781	Ling H., Zeng X., Guo S.	Functional insights into the late embryogenesis abundant (LEA) protein family from Dendrobium officinale (Orchidaceae) using an Escherichia coli system.	Sci Rep	6	39693	2016		
43683	27936403	Geng A., Wang X., Wu L., Wang F., Chen Y., Yang H., Zhang Z., Zhao X.	Arsenic accumulation and speciation in rice grown in arsanilic acid-elevated paddy soil.	Ecotoxicol. Environ. Saf.	137	172-178	2017		
43684	27997534	Gouil Q., Baulcombe D.C.	DNA Methylation Signatures of the Plant Chromomethyltransferases.	PLoS Genet.	12(12)	e1006526	2016		
43685	27905090	Luo Y., Ma T., Zhang A., Ong K.H., Li Z., Yang J., Yin Z.	Marker-assisted breeding of the rice restorer line Wanhui 6725 for disease resistance, submergence tolerance and aromatic fragrance.	Rice (N Y)	9(1)	66	2016		
43686	28008334	Zhang Y., Zhao J., Li Y., Yuan Z., He H., Yang H., Qu H., Ma C., Qu S.	Transcriptome Analysis Highlights Defense and Signaling Pathways Mediated by Rice Pi21 Gene with Partial Resistance to Magnaporthe oryzae.	Front Plant Sci	7	1834	2016		
43687	28028166	Teo C.J., Takahashi K., Shimizu K., Shimamoto K., Taoka K.I.	Potato Tuber Induction is Regulated by Interactions Between Components of a Tuberigen Complex.	Plant Cell Physiol.			2016		
43688	27978435	You Q., Zhai K., Yang D., Yang W., Wu J., Liu J., Pan W., Wang J., Zhu X., Jian Y., Liu J., Zhang Y., Deng Y., Li Q., Lou Y., Xie Q., He Z.	An E3?Ubiquitin Ligase-BAG Protein Module Controls Plant Innate Immunity and Broad-Spectrum disease resistance.	Cell Host Microbe	20(6)	758-769	2016	_,EBR1,_,CHT4,JAR1,_,_,PR10A,_,AOS2,PAL1,_,_,CEBiP,_,PR4,CHT1,_,HOX5,_,_,BAG4	SIP1, EIP5,OsRFP ,EIP2,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,EIP6,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,EIP8, OsVOZ1, VOZ1 ,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,EIP7,EIP11,CEBIP, Os-LYP1, LYP1, OsCEBiP,EIP4,OsPR4, OsPR4a, PR4a, OsPR-4,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,EIP3,Oshox5, OsHox5, EIP9,PR5,EIP10,OsBAG4, EIP1
43689	28035023	Xuan Y.H., Duan F.Y., Je B.I., Kim C.M., Li T.Y., Liu J.M., Park S.J., Cho J.H., Kim T.H., von Wiren N., Han C.D.	Related to ABI3/VP1-Like 1 (RAVL1) regulates brassinosteroid-mediated activation of AMT1;2 in rice (Oryza sativa).	J. Exp. Bot.			2016		
43690	27576685	Zhu D., Kang H., Li Z., Liu M., Zhu X., Wang Y., Wang D., Wang Z., Liu W., Wang G.L.	A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice.	Rice (N Y)	9(1)	44	2016		
43691	27910002	Wu L., Wu J., Liu Y., Gong X., Xu J., Lin D., Dong Y.	The Rice Pentatricopeptide Repeat Gene TCD10 is Needed for Chloroplast Development under Cold Stress.	Rice (N Y)	9(1)	67	2016	TCD10	
43692	28028232	Os?s-Ruiz M., Sakulkoo W., Littlejohn G.R., Martin-Urdiroz M., Talbot N.J.	Two independent S-phase checkpoints regulate appressorium-mediated plant infection by the rice blast fungus Magnaporthe oryzae.	Proc. Natl. Acad. Sci. U.S.A.			2016		
43693	27990152	Lv S., Wang Z., Yang X., Guo L., Qiu D., Zeng H.	Transcriptional Profiling of Rice Treated with MoHrip1 Reveal the Function of Protein Elicitor in Enhancement of Disease Resistance and Plant Growth.	Front Plant Sci	7	1818	2016		
43694	28025977	Charlesworth D.	Origins of rice cytoplasmic male sterility genes.	Cell Res.	27(1)	3-4	2017		
43695	28025485	Dou M., Fan S., Yang S., Huang R., Yu H., Feng X.	Overexpression of AmRosea1 gene Confers Drought and Salt Tolerance in Rice.	Int J Mol Sci	18(1)		2016		
43696	27959949	Xie Z., Shah F., Tu S., Xu C., Cao W.	Chinese Milk Vetch as Green Manure Mitigates Nitrous Oxide Emission from Monocropped Rice System in South China.	PLoS ONE	11(12)	e0168134	2016		
43697	27940306	Li J., Sun Y., Du J., Zhao Y., Xia L.	Generation of Targeted Point Mutations in Rice by a Modified CRISPR/Cas9 System.	Mol Plant			2016		
43698	27994188	Kumar V.A., Balachiranjeevi C.H., Naik S.B., Rambabu R., Rekha G., Harika G., Hajira S.K., Pranathi K., Vijay S., Anila M., Mahadevaswamy H.K., Kousik M., Yugander A., Aruna J., Hari Prasad AS., Madhav M.S., Laha G.S., Balachandran S.M., Prasad M.S., Babu V.R., Sundaram R.M.	Marker-assisted improvement of the elite restorer line of rice, RPHR-1005 for resistance against bacterial blight and blast diseases.	J. Genet.	95(4)	895-903	2016		
43699	27932049	Lu Y., Zhu J.K.	Precise Editing of a Target Base in the Rice Genome Using a Modified CRISPR/Cas9 System.	Mol Plant			2016		
43700	27976810	He Y., Zhang H., Sun Z., Li J., Hong G., Zhu Q., Zhou X., MacFarlane S., Yan F., Chen J.	Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice.	New Phytol.			2016		
43701	27905529	Endo A., Masafumi M., Kaya H., Toki S.	Efficient targeted mutagenesis of rice and tobacco genomes using Cpf1 from Francisella novicida.	Sci Rep	6	38169	2016		
43702	27929052	Xu X., Wu Z., Dong Y., Zhou Z., Xiong Z.	Effects of nitrogen and biochar amendment on soil methane concentration profiles and diffusion in a rice-wheat annual rotation system.	Sci Rep	6	38688	2016		
43703	27925226	Herzog M., Konnerup D., Pedersen O., Winkel A., Colmer T.D.	Leaf gas films contribute to rice (Oryza sativa) submergence tolerance during saline floods.	Plant Cell Environ.			2016		
43704	28012016	Zeng D.D., Qin R., Li M., Alamin M., Jin X.L., Liu Y., Shi C.H.	The Ferredoxin-dependent glutamate synthase (OsFd-GOGAT) participates in leaf senescence and the nitrogen remobilization in rice.	Mol. Genet. Genomics			2016		
43705	27917941	Francis A., Dhaka N., Bakshi M., Jung K.H., Sharma M.K., Sharma R.	Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum.	Sci Rep	6	38488	2016		
43706	28066479	Zhu F.Y., Chen M.X., Su Y.W., Xu X., Ye N.H., Cao Y.Y., Lin S., Liu T.Y., Li H.X., Wang G.Q., Jin Y., Gu Y.H., Chan W.L., Lo C., Peng X., Zhu G., Zhang J.	SWATH-MS Quantitative Analysis of Proteins in the Rice Inferior and Superior Spikelets during Grain Filling.	Front Plant Sci	7	1926	2016		
43707	27941309	Ikemoto M., Otsuka M., Thanh P.T., Phan P.D., Ishikawa R., Ishii T.	Gene interaction at seed-awning loci in the genetic background of wild rice.	Genes Genet. Syst.			2016		
43708	28006731	Chauhan R., Awasthi S., Tripathi P., Mishra S., Dwivedi S., Niranjan A., Mallick S., Tripathi P., Pande V., Tripathi R.D.	Selenite modulates the level of phenolics and nutrient element to alleviate the toxicity of arsenite in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	138	47-55	2016		
43709	28003004	Squeglia F., Berisio R., Shibuya N., Kaku H.	Defense against pathogens: Structural insights into the mechanism of chitin induced activation of innate immunity.	Curr. Med. Chem.			2016		
43710	27999987	Ye S., Yang W., Zhai R., Lu Y., Wang J., Zhang X.	Mapping and application of the twin-grain1 gene in rice.	Planta			2016	FON2	fon2, FON4, OsFON4, FON2/FON4, TG1
43711	28028608	Sasou A., Shigemitsu T., Morita S., Masumura T.	Accumulation of foreign polypeptides to rice seed protein body type I using prolamin portion sequences.	Plant Cell Rep.			2016		
43712	28005988	Wendt T., Holme I., Dockter C., Preu? A., Thomas W., Druka A., Waugh R., Hansson M., Braumann I.	HvDep1 Is a Positive Regulator of Culm Elongation and Grain Size in Barley and Impacts Yield in an Environment-Dependent Manner.	PLoS ONE	11(12)	e0168924	2016		
43713	27918246	Girija A.M., Kumar B.K., Mylavarapu M.B., Ramesh P., Vungarala S., Patel H.K., Sonti R.	Rice leaf transcriptional profiling suggests a functional interplay between Xanthomonas oryzae pv. oryzae lipopolysaccharide and extracellular polysaccharide in modulation of defense responses during infection.	Mol. Plant Microbe Interact.			2016		
43714	27990555	Tian L., Zhou X., Ma L., Xu S., Nasir F., Tian C.	Root-associated bacterial diversities of Oryza rufipogon and Oryza sativa and their influencing environmental factors.	Arch. Microbiol.			2016		
43715	28027007	Sun H., Tao J., Zhao Q., Xu G., Zhang Y.	Multiple roles of nitric oxide in root development and nitrogen uptake.	Plant Signal Behav		0	2016		
43716	27999965	Cao F., Fu M., Wang R., Cheng W., Zhang G., Wu F.	Genotypic-dependent effects of N fertilizer, glutathione, silicon, zinc, and selenium on proteomic profiles, amino acid contents, and quality of rice genotypes with contrasting grain Cd accumulation.	Funct. Integr. Genomics			2016		
43717	27994613	Liu J.M., Zhao J.Y., Lu P.P., Chen M., Guo C.H., Xu Z.S., Ma Y.Z.	The E-Subgroup Pentatricopeptide Repeat Protein Family in Arabidopsis thaliana and Confirmation of the Responsiveness PPR96 to Abiotic Stresses.	Front Plant Sci	7	1825	2016		
43718	28025342	Liu W.T., Yang C.C., Chen R.K., Jwo W.S., Wu C.W., Ting W.Y., Shung D.P., Liu C.C., Chen J.J.	RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression.	Database (Oxford)	2016		2016		
43719	27580728	Takaiwa F., Yang L., Maruyama N., Wakasa Y., Ozawa K.	Deposition mode of transforming growth factor-beta expressed in transgenic rice seed.	Plant Cell Rep.	35(12)	2461-2473	2016		
43720	27988364	Gong B.Q., Xue J., Zhang N., Xu L., Yao X., Yang Q.J., Yu Y., Wang H.B., Zhang D., Li J.F.	Rice Chitin Receptor OsCEBiP Is Not a Transmembrane Protein but Targets to Plasma Membrane via a GPI Anchor.	Mol Plant			2016		
43721	27957808	Wei X., Jiao G., Lin H., Sheng Z., Shao G., Xie L., Tang S., Xu Q., Hu P.	GRAIN INCOMPLETE FILLING 2 regulates grain filling and starch synthesis during rice caryopsis development.	J Integr Plant Biol			2016	AGPS2,AGPS1,AGPL2	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 
43722	28013273	Nakamura Y., Kudo T., Terashima S., Saito M., Nambara E., Yano K.	CATchUP: A web database for spatiotemporally regulated genes.	Plant Cell Physiol.			2016		
43723	28008850	Liao J., Huang H., Meusnier I., Adreit H., Ducasse A., Bonnot F., Pan L., He X., Kroj T., Fournier E., Tharreau D., Gladieux P., Morel J.B.	Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies.	Elife	5		2016		
43724	28013174	Wang N., Xing Y., Lou Q., Feng P., Liu S., Zhu M., Yin W., Fang S., Lin Y., Zhang T., Sang X., He G.	Dwarf and short grain 1, encoding a putative U-box protein regulates cell division and elongation in rice.	J. Plant Physiol.	209	84-94	2016	ELF1	OsPUB31, PUB31, OsPUB75, PUB75, TUD1, OsTUD1, DSG1
43725	28066455	Ma X., Xia H., Liu Y., Wei H., Zheng X., Song C., Chen L., Liu H., Luo L.	Transcriptomic and Metabolomic Studies Disclose Key Metabolism Pathways Contributing to Well-maintained Photosynthesis under the Drought and the Consequent drought-tolerance in Rice.	Front Plant Sci	7	1886	2016		
43726	28036378	Wang R., Fang N., Guan C., He W., Bao Y., Zhang H.	Characterization and Fine Mapping of a Blast Resistant Gene Pi-jnw1 from the japonica Rice Landrace Jiangnanwan.	PLoS ONE	11(12)	e0169417	2016	_	Pi-jnw1
43727	27976484	Koo J., Schnabel T., Liong S., Evitt N.H., Swartz J.R.	High-Throughput Screening of Catalytic H2 Production.	Angew. Chem. Int. Ed. Engl.			2016		
43728	28043782	Hu X., Wang C., Liu Q., Fu Y., Wang K.	Targeted mutagenesis in rice using CRISPR-Cpf1 system.	J Genet Genomics			2016		
43729	28018389	Ren D., Rao Y., Leng Y., Li Z., Xu Q., Wu L., Qiu Z., Xue D., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Dong G., Guo L., Qian Q.	Regulatory Role of OsMADS34 in the Determination of Glumes Fate, grain yield, and Quality in Rice.	Front Plant Sci	7	1853	2016		
43730	28058034	Di Pierro F., Putignano P., Ferrara T., Raiola C., Rapacioli G., Villanova N.	Retrospective analysis of the effects of a highly standardized mixture of Berberis aristata, Silybum marianum, and monacolins K and KA in patients with dyslipidemia.	Clin Pharmacol	9	1-7	2017		
43731	27943653	Wei Q., Mu X.C., Wu S.F., Wang L.X., Gao C.F.	Cross-resistance to three phenylpyrazole insecticides and A2'N mutation detection of GABA receptor subunit in fipronil-resistant Laodelphax striatellus (Hemiptera: Delphacidae).	Pest Manag. Sci.			2016		
43732	27729434	Cui Y., Song B.K., Li L.F., Li Y.L., Huang Z., Caicedo A.L., Jia Y., Olsen K.M.	Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice.	G3 (Bethesda)	6(12)	4105-4114	2016		
43733	27973585	Ning D., Liang Y., Liu Z., Xiao J., Duan A.	Impacts of Steel-Slag-Based Silicate Fertilizer on Soil Acidity and Silicon Availability and Metals-Immobilization in a Paddy Soil.	PLoS ONE	11(12)	e0168163	2016		
43734	28036107	Voss-Fels KP., Qian L., Parra-Londono S., Uptmoor R., Frisch M., Keeble-Gagn?re G., Appels R., Snowdon R.J.	Linkage drag constrains the roots of modern wheat.	Plant Cell Environ.			2016		
43735	28018384	Imam J., Mandal N.P., Variar M., Shukla P.	Allele Mining and Selective Patterns of Pi9 Gene in a Set of Rice Landraces from India.	Front Plant Sci	7	1846	2016		
43736	27922088	He X., Chen L., Chen X., Yu H., Peng L., Han B.	Analysis of four toxic metals in a single rice seed by matrix solid phase dispersion -inductively coupled plasma mass spectrometry.	Sci Rep	6	38472	2016		
43737	27749149	Pan X., Wu J., Xu S., Duan Y., Zhou M.	CatB is Critical for Total Catalase Activity and Reduces Bactericidal Effects of Phenazine-1-Carboxylic Acid on Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola.	Phytopathology	107(2)	163-172	2017		
43738	28066483	Danisman S.	TCP Transcription Factors at the Interface between Environmental Challenges and the Plant's Growth Responses.	Front Plant Sci	7	1930	2016		
43739	27959472	Gregorio G.V., Gonzales M.L., Dans L.F., Martinez E.G.	Polymer-based oral rehydration solution for treating acute watery diarrhoea.	Cochrane Database Syst Rev	12	CD006519	2016		
43740	27904462	Wu J., Kim S.G., Kang K.Y., Kim J.G., Park S.R., Gupta R., Kim Y.H., Wang Y., Kim S.T.	Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice.	Plant Pathol. J.	32(6)	552-562	2016		
43741	28040774	Niehaus E.M., M?nsterk?tter M., Proctor R.H., Brown D.W., Sharon A., Idan Y., Oren-Young L., Sieber C.M., Nov?k O., P?n??k A., Tarkowsk? D., Hromadov? K., Freeman S., Maymon M., Elazar M., Youssef S.A., El-Shabrawy ES., Shalaby A.B., Houterman P., Brock N.L., Burkhardt I., Tsavkelova E.A., Dickschat J.S., Galuszka P., G?ldener U., Tudzynski B.	Comparative "Omics" of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis.	Genome Biol Evol	8(11)	3574-3599	2016		
43742	27907079	Tayi L., Maku R.V., Patel H.K., Sonti R.V.	Identification of Pectin Degrading Enzymes Secreted by Xanthomonas oryzae pv. oryzae and Determination of Their Role in Virulence on Rice.	PLoS ONE	11(12)	e0166396	2016		
43743	27910910	Ariani P., Regaiolo A., Lovato A., Giorgetti A., Porceddu A., Camiolo S., Wong D., Castellarin S., Vandelle E., Polverari A.	Genome-wide characterisation and expression profile of the grapevine ATL ubiquitin ligase family reveal biotic and abiotic stress-responsive and development-related members.	Sci Rep	6	38260	2016		
43744	27905546	Cheng X.J., He B., Chen L., Xiao S.Q., Fu J., Chen Y., Yu T.Q., Cheng Z.Q., Feng H.	Transcriptome analysis confers a complex disease resistance network in wild rice Oryza meyeriana against Xanthomonas oryzae pv. oryzae.	Sci Rep	6	38215	2016		
43745	27992591	Pang Y., Ali J., Wang X., Franje N.J., Revilleza J.E., Xu J., Li Z.	Relationship of Rice Grain Amylose, gelatinization temperature and Pasting Properties for Breeding Better Eating and Cooking Quality of Rice Varieties.	PLoS ONE	11(12)	e0168483	2016		
43746	28018373	Ata-Ul-Karim ST., Cao Q., Zhu Y., Tang L., Rehmani M.I., Cao W.	Non-destructive Assessment of Plant Nitrogen Parameters Using Leaf Chlorophyll Measurements in Rice.	Front Plant Sci	7	1829	2016		
43747	28008549	Uzuhashi S., Hata K., Matsuura S., Tojo M.	Globisporangium oryzicola sp. nov., causing poor seedling establishment of directly seeded rice.	Antonie Van Leeuwenhoek			2016		
43748	27910900	Johnson-Beebout SE., Goloran J.B., Rubianes F.H., Jacob J.D., Castillo O.B.	Zn uptake behavior of rice genotypes and its implication on grain Zn biofortification.	Sci Rep	6	38301	2016		
43749	27849025	Jogawat A., Vadassery J., Verma N., Oelm?ller R., Dua M., Nevo E., Johri A.K.	PiHOG1, a stress regulator MAP kinase from the root endophyte fungus Piriformospora indica, confers salinity stress tolerance in rice plants.	Sci Rep	6	36765	2016		
43750	27762074	Zhao S., Zhao L., Liu F., Wu Y., Zhu Z., Sun C., Tan L.	NARROW AND ROLLED LEAF 2 regulates leaf shape, male fertility, and seed size in rice.	J Integr Plant Biol	58(12)	983-996	2016	TDR,CYP703A3,_,_,MTR1,GAMYB,GH2,SRL2,4CL3,RL14,CYP704B2,4CL5	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsCYP703A3,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsMS2, MS2, OsDPW, DPW, DPW1,OsMTR1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,gh2, CAD2, CAD, OsCAD2, GH2 ,NRL2, OsSRL2, OsNRL2,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24,OsCYP704B2,Os4CL5, 4CL3, Os4CL3
43751	27882529	Yun Y.T., Chung C.T., Lee Y.J., Na H.J., Lee J.C., Lee S.G., Lee K.W., Yoon Y.H., Kang J.W., Lee H.S., Lee J.Y., Ahn S.N.	QTL Mapping of Grain Quality Traits Using Introgression Lines Carrying Oryza rufipogon Chromosome Segments in Japonica Rice.	Rice (N Y)	9(1)	62	2016		
43752	27862521	Maruyama K., Ogata T., Kanamori N., Yoshiwara K., Goto S., Yamamoto Y.Y., Tokoro Y., Noda C., Takaki Y., Urawa H., Iuchi S., Urano K., Yoshida T., Sakurai T., Kojima M., Sakakibara H., Shinozaki K., Yamaguchi-Shinozaki K.	Design of an optimal promoter involved in the heat-induced transcriptional pathway in Arabidopsis, soybean, rice, and maize.	Plant J.			2016		
43753	27848161	Wang D., Liu J., Li C., Kang H., Wang Y., Tan X., Liu M., Deng Y., Wang Z., Liu Y., Zhang D., Xiao Y., Wang G.L.	Genome-wide Association Mapping of cold tolerance Genes at the Seedling Stage in Rice.	Rice (N Y)	9(1)	61	2016		
43754	27814357	Dong H., Zhao H., Xie W., Han Z., Li G., Yao W., Bai X., Hu Y., Guo Z., Lu K., Yang L., Xing Y.	A Novel tiller angle Gene, TAC3, together with TAC1 and D2 Largely Determine the Natural Variation of tiller angle in Rice Cultivars.	PLoS Genet.	12(11)	e1006412	2016	SPK,D2,TAC3	Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,
43755	27933072	Yang D., Ye X., Zheng X., Cheng C., Ye N., Huang F.	Development and Evaluation of Chromosome Segment Substitution Lines Carrying Overlapping Chromosome Segments of the Whole Wild Rice Genome.	Front Plant Sci	7	1737	2016		
43756	27902802	Cheng J., He Y., Zhan C., Yang B., Xu E., Zhang H., Wang Z.	Identification and Characterization of Quantitative Trait Loci for Shattering in Rice Landrace Jiucaiqing from Taihu Lake Valley, China.	Plant Genome	9(3)		2016		
43757	27881984	Sood S., Kumar A., Babu B.K., Gaur V.S., Pandey D., Kant L., Pattnayak A.	Gene Discovery and Advances in Finger Millet [Eleusine coracana (L.) Gaertn.] Genomics-An Important Nutri-Cereal of Future.	Front Plant Sci	7	1634	2016		
43758	27877189	Wang W., Qin Q., Sun F., Wang Y., Xu D., Li Z., Fu B.	Genome-Wide Differences in DNA Methylation Changes in Two Contrasting Rice Genotypes in Response to Drought Conditions.	Front Plant Sci	7	1675	2016		
43759	27965705	Zhao J., Yang Y., Yang D., Cheng Y., Jiao M., Zhan G., Zhang H., Wang J., Zhou K., Huang L., Kang Z.	Characterization and Genetic Analysis of Rice Mutant crr1 Exhibiting Compromised Non-host Resistance to Puccinia striiformis f. sp. tritici (Pst).	Front Plant Sci	7	1822	2016	CRR1	
43760	27965688	Pinel-Galzi A., Dubreuil-Tranchant C., H?brard E., Mariac C., Ghesqui?re A., Albar L.	Mutations in Rice yellow mottle virus polyprotein P2a Involved in RYMV2 Gene Resistance Breakdown.	Front Plant Sci	7	1779	2016		
43761	27891136	Guo W., Chen T., Hussain N., Zhang G., Jiang L.	Characterization of Salinity Tolerance of Transgenic Rice Lines Harboring HsCBL8 of Wild Barley (Hordeum spontanum) Line from Qinghai-Tibet Plateau.	Front Plant Sci	7	1678	2016		
43762	27841331	Takeuchi J., Okamoto M., Mega R., Kanno Y., Ohnishi T., Seo M., Todoroki Y.	Abscinazole-E3M, a practical inhibitor of abscisic acid 8'-hydroxylase for improving drought tolerance.	Sci Rep	6	37060	2016		
43763	27900550	Komiya R.	Biogenesis of diverse plant phasiRNAs involves an miRNA-trigger and Dicer-processing.	J. Plant Res.	130(1)	17-23	2017		
43764	27875742	Ma X., Sun X., Li C., Huan R., Sun C., Wang Y., Xiao F., Wang Q., Chen P., Ma F., Zhang K., Wang P., Deng X.	Map-based cloning and characterization of the novel yellow-green leaf gene YS83 in rice (Oryza sativa).	Plant Physiol. Biochem.	111	1-9	2016		
43765	27717469	Saensuk C., Wanchana S., Choowongkomon K., Wongpornchai S., Kraithong T., Imsabai W., Chaichoompu E., Ruanjaichon V., Toojinda T., Vanavichit A., Arikit S.	De novo transcriptome assembly and identification of the gene conferring a "pandan-like" aroma in coconut (Cocos nucifera L.).	Plant Sci.	252	324-334	2016		
43766	27901067	Cord-Landwehr S., Melcher R.L., Kolkenbrock S., Moerschbacher B.M.	A chitin deacetylase from the endophytic fungus Pestalotiopsis sp. efficiently inactivates the elicitor activity of chitin oligomers in rice cells.	Sci Rep	6	38018	2016		
43767	27889940	Brozynska M., Copetti D., Furtado A., Wing R.A., Crayn D., Fox G., Ishikawa R., Henry R.J.	Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice.	Plant Biotechnol. J.			2016		
43768	27865844	Park J.H., Jung S.	Perturbations of carotenoid and tetrapyrrole biosynthetic pathways result in differential alterations in chloroplast function and plastid signaling.	Biochem. Biophys. Res. Commun.			2016		
43769	27825304	Yu C., Wang N., Wu M., Tian F., Chen H., Yang F., Yuan X., Yang C.H., He C.	OxyR-regulated catalase CatB promotes the virulence in rice via detoxifying hydrogen peroxide in Xanthomonas oryzae pv. oryzae.	BMC Microbiol.	16(1)	269	2016		
43770	27895204	Ying Y., Yue W., Wang S., Li S., Wang M., Zhao Y., Wang C., Mao C., Whelan J., Shou H.	Two h-Type Thioredoxins Interact with the E2 Ubiquitin Conjugase PHO2 to Fine-Tune Phosphate Homeostasis in Rice.	Plant Physiol.	173(1)	812-824	2017		
43771	27894970	Zhang L., Liu B., Zheng G., Zhang A., Li R.	Genome-wide characterization of the SiDof gene family in foxtail millet (Setaria italica).	BioSystems	151	27-33	2016		
43772	27874312	Kang D.Y., S P N., Darvin P., Joung Y.H., Byun H.J., Do C.H., Park K.D., Park M.N., Cho K.H., Yang Y.M.	Momilactone B Inhibits Ketosis In Vitro by Regulating the ANGPTL3-LPL Pathway and Inhibiting HMGCS2.	Anim. Biotechnol.		1-9	2016		
43773	27819540	He W., Fang N., Wang R., Wu Y., Zeng G., Guan C., Chen H., Huang J., Wang J., Bao Y., Zhang H.	Fine Mapping of a New Race-Specific Blast Resistance Gene, Pi-hk2, in Japonica Heikezijing from Taihu Region of China.	Phytopathology	107(1)	84-91	2017	PIHK2	Pi-hk2
43774	27809780	Ku L., Tian L., Su H., Wang C., Wang X., Wu L., Shi Y., Li G., Wang Z., Wang H., Song X., Dou D., Ren Z., Chen Y.	Dual functions of the ZmCCT-associated quantitative trait locus in flowering and stress responses under long-day conditions.	BMC Plant Biol.	16(1)	239	2016		
43775	27873004	Wang X., Fu Z., Chen X., Peng C., Xu X., Wei W., Li F., Xu J.	Use of a novel metal indicator to judge loop-mediated isothermal amplification for detecting the 35S promoter.	Anal Bioanal Chem			2016		
43776	27853319	Wei H., Feng F., Lou Q., Xia H., Ma X., Liu Y., Xu K., Yu X., Mei H., Luo L.	Genetic determination of the enhanced drought resistance of rice maintainer HuHan2B by pedigree breeding.	Sci Rep	6	37302	2016		
43777	27900537	Ahmed M.M., Bian S., Wang M., Zhao J., Zhang B., Liu Q., Zhang C., Tang S., Gu M., Yu H.	RNAi-mediated resistance to rice black-streaked dwarf virus in transgenic rice.	Transgenic Res.			2016		
43778	27819727	Vighi I.L., Benitez L.C., do Amaral MN., Auler P.A., Moraes G.P., Rodrigues G.S., da Maia LC., Pinto L.S., Braga E.J.	Changes in gene expression and Catalase activity in Oryza sativa L. under abiotic stress.	Genet. Mol. Res.	15(4)		2016		
43779	27974904	Hwang S.H., Li H.M., Lim S.S., Wang Z., Hong J.S., Huang B.	Evaluation of a Standardized Extract from Morus alba against alpha-glucosidase Inhibitory Effect and Postprandial Antihyperglycemic in Patients with Impaired Glucose Tolerance: A Randomized Double-Blind Clinical Trial.	Evid Based Complement Alternat Med	2016	8983232	2016		
43780	27858291	Illana A., Marconi M., Rodr?guez-Romero J., Xu P., Dalmay T., Wilkinson M.D., Ayll?n M?., Sesma A.	Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae.	Arch. Virol.			2016		
43781	27837430	Liu S., Gao H., Wu X., Fang Q., Chen L., Zhao F.J., Huang C.F.	Isolation and Characterization of an Aluminum-resistant Mutant in Rice.	Rice (N Y)	9(1)	60	2016		
43782	27837098	Fukushima S., Mori M., Sugano S., Takatsuji H.	Transcription Factor WRKY62 Plays a Role in Pathogen Defense and Hypoxia-Responsive Gene Expression in Rice.	Plant Cell Physiol.	57(12)	2541-2551	2016	_,ERF68,PR1A,CPS2,WRKY62,PR10A,DPF,ADH2,WRKY45,CPS4,PR1B	,OsERF#068, OsERF068, OsERF68, AP2/EREBP#003, AP2/EREBP3, ERF2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsbHLH025, bHLH025, bHLH25,Adh2*, Adh2,OsWRKY45,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
43783	27811915	Ji Z., Ji C., Liu B., Zou L., Chen G., Yang B.	Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance.	Nat Commun	7	13435	2016		
43784	27881987	Serfling A., Templer S.E., Winter P., Ordon F.	Microscopic and Molecular Characterization of the Prehaustorial Resistance against Wheat Leaf Rust (Puccinia triticina) in Einkorn (Triticum monococcum).	Front Plant Sci	7	1668	2016		
43785	27876142	Li N., Chen J., Shi Y.P.	Magnetic polyethyleneimine functionalized reduced graphene oxide as a novel magnetic solid-phase extraction adsorbent for the determination of polar acidic herbicides in rice.	Anal. Chim. Acta	949	23-34	2017		
43786	27889499	Li C., Tang Z., Wei J., Qu H., Xie Y., Xu G.	The OsAMT1.1 gene functions in ammonium uptake and ammonium-potassium homeostasis over low and high ammonium concentration ranges.	J Genet Genomics	43(11)	639-649	2016		
43787	27878453	Auler P.A., Benitez L.C., do Amaral MN., Vighi I.L., Dos Santos Rodrigues G., da Maia LC., Braga E.J.	Evaluation of stability and validation of reference genes for RT-qPCR expression studies in rice plants under water deficit.	J. Appl. Genet.			2016		
43788	27817046	Nam H.J., Kwon J.Y., Choi H.Y., Kang S.H., Jung H.S., Kim D.I.	Production and Purification of Recombinant Glucocerebrosidase in Transgenic Rice Cell Suspension Cultures.	Appl. Biochem. Biotechnol.			2016		
43789	27835850	Tovuu A., Zulfugarov I.S., Wu G., Kang I.S., Kim C., Moon B.Y., An G., Lee C.H.	Rice mutants deficient in omega-3 fatty acid desaturase (FAD8) fail to acclimate to cold temperatures.	Plant Physiol. Biochem.	109	525-535	2016		
43790	27815966	Smoczynska A., Szweykowska-Kulinska Z.	MicroRNA-mediated regulation of flower development in grasses.	Acta Biochim. Pol.	63(4)	687-692	2016		
43791	27815670	Qian W., Wu C., Fu Y., Hu G., He Z., Liu W.	Novel rice mutants overexpressing the brassinosteroid catabolic gene CYP734A4.	Plant Mol. Biol.			2016		
43792	27900723	Fang N., Xu R., Huang L., Zhang B., Duan P., Li N., Luo Y., Li Y.	SMALL GRAIN 11 Controls grain size, Grain Number and grain yield in Rice.	Rice (N Y)	9(1)	64	2016	PIL16,_,ILI6,ILI5,BU1,D61,D2	APG, OsPIL16, OsbHLH106,GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7,ILI6, OsILI6, PGL1, OsPGL1,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 
43793	27830537	Raboin L.M., Ballini E., Tharreau D., Ramanantsoanirina A., Frouin J., Courtois B., Ahmadi N.	Association mapping of resistance to rice blast in upland field conditions.	Rice (N Y)	9(1)	59	2016		
43794	27914544	Mu X.C., Zhang W., Wang L.X., Zhang S., Zhang K., Gao C.F., Wu S.F.	Resistance monitoring and cross-resistance patterns of three rice planthoppers, Nilaparvata lugens, Sogatella furcifera and Laodelphax striatellus to dinotefuran in China.	Pestic Biochem Physiol	134	8-13	2016		
43795	27876888	Ren J., Gao F., Wu X., Lu X., Zeng L., Lv J., Su X., Luo H., Ren G.	Bph32, a novel gene encoding an unknown SCR domain-containing protein, confers resistance against the brown planthopper in rice.	Sci Rep	6	37645	2016	BPH32	Bph32
43796	27838237	Uhrig J.F., Huang L.J., Barghahn S., Willmer M., Thurow C., Gatz C.	CC-type glutaredoxins recruit the transcriptional co-repressor TOPLESS to TGA-dependent target promoters in Arabidopsis thaliana.	Biochim. Biophys. Acta	1860(2)	218-226	2016		
43797	27902426	Jacob S., Gr?tsch T., Foster A.J., Sch?ffler A., Rieger P.H., Sandjo L.P., Liermann J.C., Opatz T., Thines E.	Unravelling the biosynthesis of pyriculol in the rice blast fungus Magnaporthe oryzae.	Microbiology (Reading, Engl.)			2016		
43798	27881876	Nistelberger H.M., Smith O., Wales N., Star B., Boessenkool S.	The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains.	Sci Rep	6	37347	2016		
43799	27845739	Lin S., Chen L., Tao H., Huang J., Xu C., Li L., Ma S., Tian T., Liu W., Xue L., Ai Y., He H.	Impact of SNPs on Protein Phosphorylation Status in Rice (Oryza sativa L.).	Int J Mol Sci	17(11)		2016		
43800	27876748	You L.L., Wu Y., Xu B., Ding J., Ge L.Q., Yang G.Q., Song Q.S., Stanley D., Wu J.C.	Driving Pest Insect Populations: Agricultural Chemicals Lead to an Adaptive Syndrome in Nilaparvata Lugens St?l (Hemiptera: Delphacidae).	Sci Rep	6	37430	2016		
43801	27889933	Selvaraj M.G., Valencia M.O., Ogawa S., Lu Y., Wu L., Downs C., Skinner W., Lu Z., Kridl J.C., Ishitani M., van Boxtel J.	Development and field performance of nitrogen use efficient rice lines for Africa.	Plant Biotechnol. J.			2016		
43802	27874087	Zhou H., He M., Li J., Chen L., Huang Z., Zheng S., Zhu L., Ni E., Jiang D., Zhao B., Zhuang C.	Development of Commercial Thermo-sensitive Genic Male Sterile Rice Accelerates Hybrid Rice Breeding Using the CRISPR/Cas9-mediated TMS5 Editing System.	Sci Rep	6	37395	2016		
43803	27862861	Jiang S., Wu H., Liu H., Zheng J., Lin Y., Chen H.	The overexpression of insect endogenous small RNAs in transgenic rice inhibits growth and delays pupation of striped stem borer (Chilo suppressalis).	Pest Manag. Sci.			2016		
43804	28007175	Pan L., Sun J., Wu X., Wei Z., Zhu L.	Transformation of hydroxylated and methoxylated 2,2',4,4',5-brominated diphenyl ether (BDE-99) in plants.	J Environ Sci (China)	49	197-202	2016		
43805	27671120	Helliwell E.E., Wang Q., Yang Y.	Ethylene Biosynthesis and Signaling Is Required for Rice Immune Response and Basal Resistance Against Magnaporthe oryzae Infection.	Mol. Plant Microbe Interact.	29(11)	831-843	2016		
43806	27912109	Deng L., Qin P., Liu Z., Wang G., Chen W., Tong J., Xiao L., Tu B., Sun Y., Yan W., He H., Tan J., Chen X., Wang Y., Li S., Ma B.	Characterization and fine-mapping of a novel premature leaf senescence mutant yellow leaf and dwarf 1 in rice.	Plant Physiol. Biochem.	111	50-58	2016		
43807	28049856	Chen X., Zhang H., Sun H., Luo H., Zhao L., Dong Z., Yan S., Zhao C., Liu R., Xu C., Li S., Chen H., Jin W.	IRREGULAR pollen EXINE1 Is a Novel Factor in Anther Cuticle and pollen Exine Formation.	Plant Physiol.	173(1)	307-325	2017		
43808	27815665	Ogah E.O., Smart L.E., Woodcock C.M., Caulfield J.C., Birkett M.A., Pickett J.A., Nwilene F.E., Bruce T.J.	Electrophysiological and behavioral responses of female African rice gall midge, Orseolia oryzivora Harris and Gagn?, to host plant volatiles.	J. Chem. Ecol.			2016		
43809	27800704	Cao J., Yang C., Li L., Jiang L., Wu Y., Wu C., Bu Q., Xia G., Liu X., Luo Y., Liu J.	Rice Plasma Membrane Proteomics Reveals Magnaporthe oryzae Promotes Susceptibility by Sequential Activation of Host Hormone Signaling Pathways.	Mol. Plant Microbe Interact.	29(11)	902-913	2016		
43810	27899926	Li X., Feng B., Zhang F., Tang Y., Zhang L., Ma L., Zhao C., Gao S.	Bioinformatic Analyses of Subgroup-A Members of the Wheat bZIP Transcription Factor Family and Functional Identification of TabZIP174 Involved in Drought Stress Response.	Front Plant Sci	7	1643	2016		
43811	27761892	Glaubitz U., Li X., Schaedel S., Erban A., Sulpice R., Kopka J., Hincha D.K., Zuther E.	Integrated analysis of rice transcriptomic and metabolomic responses to elevated night temperatures identifies sensitivity- and tolerance-related profiles.	Plant Cell Environ.	40(1)	121-137	2017		
43812	27805032	Wang L., Tang N., Gao X., Guo D., Chang Z., Fu Y., Akinyemi I.A., Wu Q.	Understanding the immune system architecture and transcriptome responses to southern rice black-streaked dwarf virus in Sogatella furcifera.	Sci Rep	6	36254	2016		
43813	27848980	Tabassum M.A., Zhu G., Hafeez A., Wahid M.A., Shaban M., Li Y.	Influence of leaf vein density and thickness on hydraulic conductance and photosynthesis in rice (Oryza sativa L.) during water stress.	Sci Rep	6	36894	2016		
43814	27895202	Ma W., Wu F., Sheng P., Wang X., Zhang Z., Zhou K., Zhang H., Hu J., Lin Q., Cheng Z., Wang J., Zhu S., Zhang X., Guo X., Wang H., Wu C., Zhai H., Wan J.	The lbd12-1 Transcription Factor Suppresses Apical Meristem Size by Repressing Argonaute 10 Expression.	Plant Physiol.	173(1)	801-811	2017	_,AGO1A,_	LBD11-1 ,OsAGO1a, AGO1a, AGO10, AGO1-1 ,LBD12-1 
43815	27819745	Yuan H.J., Wang Y.L., Wei Z.X., Xu Q.J., Zeng X.Q., Tang Y.W., Nyima T.S.	NJ cluster analysis of the SnRK2, PYR/PYL/RCAR, and ABF genes in Tibetan hulless barley.	Genet. Mol. Res.	15(4)		2016		
43816	27901104	Xiao C., Hu J., Ao Y.T., Cheng M.X., Gao G.J., Zhang Q.L., He G.C., He Y.Q.	Development and evaluation of near-isogenic lines for brown planthopper resistance in rice cv. 9311.	Sci Rep	6	38159	2016		
43817	27810475	Song Z., Zhao Y., Qian G., Odhiambo B.O., Liu F.	Novel insights into the regulatory roles of gene hshB in Xanthomonas oryzae pv. oryzicola.	Res. Microbiol.			2016		
43818	27664745	Tamreihao K., Ningthoujam D.S., Nimaichand S., Singh E.S., Reena P., Singh S.H., Nongthomba U.	Biocontrol and plant growth promoting activities of a Streptomyces corchorusii strain UCR3-16 and preparation of powder formulation for application as biofertilizer agents for rice plant.	Microbiol. Res.	192	260-70	2016		
43819	27899667	Mansueto L., Fuentes R.R., Borja F.N., Detras J., Abriol-Santos JM., Chebotarov D., Sanciangco M., Palis K., Copetti D., Poliakov A., Dubchak I., Solovyev V., Wing R.A., Hamilton R.S., Mauleon R., McNally K.L., Alexandrov N.	Rice SNP-seek database update: new SNPs, indels, and queries.	Nucleic Acids Res.	45(D1)	D1075-D1081	2017		
43820	27896932	Holyoke C.W., Cordova D., Zhang W., Barry J.D., Leighty R.M., Dietrich R.F., Rauh J.J., Pahutski T.F., Lahm G.P., Tong M.T., Benner E.A., Andreassi J.L., Smith R.M., Vincent D.R., Christianson L.A., Teixeira L.A., Singh V., Hughes K.A.	Mesoionic insecticides: A novel class of insecticides that modulate nicotinic acetylcholine receptors.	Pest Manag. Sci.			2016		
43821	27838799	Lou S., Chen S., Zhao X., Chen L., Zhang J., Fu H., Liu Y.G., Chen Y.	The far-upstream regulatory region of RFL is required for its precise spatial-temporal expression for floral development in rice.	Plant Mol. Biol.			2016		
43822	27866313	Chen Y.S., Chao Y.C., Tseng T.W., Huang C.K., Lo P.C., Lu C.A.	Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.	Plant Mol. Biol.			2016		
43823	27879387	Rushton P.S., Olek A.T., Makowski L., Badger J., Steussy C.N., Carpita N.C., Stauffacher C.V.	Rice Cellulose SynthaseA8 Plant-Conserved Region Is a Coiled-Coil at the Catalytic Core Entrance.	Plant Physiol.	173(1)	482-494	2017		
43824	27717449	Wei J., Choi H., Jin P., Wu Y., Yoon J., Lee Y.S., Quan T., An G.	GL2-type homeobox gene Roc4 in rice promotes flowering time preferentially under long days by repressing Ghd7.	Plant Sci.	252	133-143	2016		
43825	27923179	Dehury B., Behera S.K., Mahapatra N.	Structural dynamics of Casein Kinase I (CKI) from malarial parasite Plasmodium falciparum (Isolate 3D7): Insights from theoretical modelling and molecular simulations.	J. Mol. Graph. Model.	71	154-166	2017		
43826	27833163	Gao X., Shi D., Lv A., Wang S., Yuan S., Zhou P., An Y.	Increase phosphorus availability from the use of alfalfa (Medicago sativa L) green manure in rice (Oryza sativa L.) agroecosystem.	Sci Rep	6	36981	2016		
43827	27804786	Morita R., Nakagawa M., Takehisa H., Hayashi Y., Ichida H., Usuda S., Ichinose K., Abe H., Shirakawa Y., Sato T., Fujiwara M.T., Itoh R.D., Abe T.	Heavy-ion beam mutagenesis identified an essential gene for chloroplast development under cold stress conditions during both early growth and tillering stages in rice.	Biosci. Biotechnol. Biochem.	81(2)	271-282	2017	TCD5,PSBA,RPOA,RPOB,PSAA,RBCL	OsTCD5, TSV, OsTSV, CSV1, OsCSV1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,rope, rpoalpha, Rpoalpha, rope, RpoA ,rpoB, RpoB, Rpobeta,PsaA, psaA, PsAA1,rbcL, rbcA, OsrbcL
43828	27881726	Butardo V.M., Anacleto R., Parween S., Samson I., de Guzman K., Alhambra C.M., Misra G., Sreenivasulu N.	Systems Genetics Identifies a Novel Regulatory Domain of Amylose Synthesis.	Plant Physiol.	173(1)	887-906	2017		
43829	27823898	Wang X.Y., Du L.X., Liu C.X., Gong L., Han L.Z., Peng Y.F.	RNAi in the striped stem borer, Chilo suppressalis, establishes a functional role for aminopeptidase N in Cry1Ab intoxication.	J. Invertebr. Pathol.	143	1-10	2016		
43830	27717459	Sestili F., Sparla F., Botticella E., Janni M., D'Ovidio R., Falini G., Marri L., Cuesta-Seijo JA., Moscatello S., Battistelli A., Trost P., Lafiandra D.	The down-regulation of the genes encoding Isoamylase 1 alters the starch composition of the durum wheat grain.	Plant Sci.	252	230-238	2016		
43831	27867151	Haibing S., Bin W., Renjie C., Xiaoya Z., Shibo Y., Tao L.	Genetic analysis and gene mapping of the glabrous leaf and hull mutant GLR3 in rice (Oryza sativa L.).	Yi Chuan	38(11)	1012-1019	2016		
43832	27898176	Kou Y., Tan Y.H., Ramanujam R., Naqvi N.I.	Structure-function analyses of the Pth11 receptor reveal an important role for CFEM motif and redox regulation in rice blast.	New Phytol.			2016		
43833	27825968	Zhang L., Dong C., Zhang Q., Zhao G., Li F., Xia C., Zhang L., Han L., Wu J., Jia J., Liu X., Kong X.	The wheat MYB transcription factor TaMYB18 regulates leaf rolling in rice.	Biochem. Biophys. Res. Commun.	481(1-2)	77-83	2016		
43834	27848097	Nutan K.K., Kushwaha H.R., Singla-Pareek SL., Pareek A.	Transcription dynamics of Saltol QTL localized genes encoding transcription factors, reveals their differential regulation in contrasting genotypes of rice.	Funct. Integr. Genomics	17(1)	69-83	2017		
43835	27900724	Lu W., Deng M., Guo F., Wang M., Zeng Z., Han N., Yang Y., Zhu M., Bian H.	Suppression of OsVPE3 Enhances salt tolerance by Attenuating Vacuole Rupture during Programmed Cell Death and Affects Stomata Development in Rice.	Rice (N Y)	9(1)	65	2016		
43836	27891171	Cai W.J., Ye T.T., Wang Q., Cai B.D., Feng Y.Q.	A rapid approach to investigate spatiotemporal distribution of phytohormones in rice.	Plant Methods	12	47	2016		
43837	27817054	Suzuki Y., Kondo E., Makino A.	Effects of co-overexpression of the genes of Rubisco and Transketolase on photosynthesis in rice.	Photosyn. Res.			2016		
43838	27797723	Zhang Z.H., Cao L.Y., Chen J.Y., Zhang Y.X., Zhuang J.Y., Cheng S.H.	Effects of Hd2 in the presence of the photoperiod-insensitive functional allele of Hd1 in rice.	Biol Open	5(11)	1719-1726	2016		
43839	27811002	Li Q., Yang A., Zhang W.H.	Efficient acquisition of iron confers greater tolerance to saline-alkaline stress in rice (Oryza sativa L.).	J. Exp. Bot.	67(22)	6431-6444	2016		
43840	27833097	Tao Y., Zhu J., Xu J., Wang L., Gu H., Zhou R., Yang Z., Zhou Y., Liang G.	Exploitation of heterosis loci for yield and yield components in rice using chromosome segment substitution lines.	Sci Rep	6	36802	2016		
43841	27838598	Moulick D., Ghosh D., Chandra Santra S.	Evaluation of effectiveness of seed priming with selenium in rice during germination under arsenic stress.	Plant Physiol. Biochem.	109	571-578	2016		
43842	27872632	Mathew I.E., Das S., Mahto A., Agarwal P.	Three Rice NAC Transcription Factors Heteromerize and Are Associated with seed size.	Front Plant Sci	7	1638	2016		
43843	27895653	Xu J.N., Xing S.S., Zhang Z.R., Chen X.S., Wang X.Y.	Genome-Wide Identification and Expression Analysis of the Tubby-Like Protein Family in the Malus domestica Genome.	Front Plant Sci	7	1693	2016		
43844	27834403	Ji H., Kim S.R., Kim Y.H., Suh J.P., Park H.M., Sreenivasulu N., Misra G., Kim S.M., Hechanova S.L., Kim H., Lee G.S., Yoon U.H., Kim T.H., Lim H., Suh S.C., Yang J., An G., Jena K.K.	Erratum: Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Sci Rep	6	36688	2016		
43845	27840573	Seol Y.J., Won S.Y., Shin Y., Lee J.Y., Chun J.S., Kim Y.K., Kim C.K.	A Multilayered Screening Method for the Identification of Regulatory Genes in Rice by Agronomic Traits.	Evol. Bioinform. Online	12	253-262	2016		
43846	27861933	Win K.T., Yamagata Y., Doi K., Uyama K., Nagai Y., Toda Y., Kani T., Ashikari M., Yasui H., Yoshimura A.	A single base change explains the independent origin of and selection for the nonshattering gene in African rice domestication.	New Phytol.			2016		
43847	27833841	Gopalakrishnan S., Vadlamudi S., Samineni S., Sameer Kumar CV.	Plant growth-promotion and biofortification of chickpea and pigeonpea through inoculation of biocontrol potential bacteria, isolated from organic soils.	Springerplus	5(1)	1882	2016		
43848	27737708	Hosen S.M., Das D., Kobi R., Chowdhury D.U., Alam M.J., Rudra B., Bakar M.A., Islam S., Rahman Z., Al-Forkan M.	Study of arsenic accumulation in rice and evaluation of protective effects of Chorchorus olitorius leaves against arsenic contaminated rice induced toxicities in Wistar albino rats.	BMC Pharmacol Toxicol	17(1)	46	2016		
43849	27595571	Rhee J., Horie T., Sasano S., Nakahara Y., Katsuhara M.	Identification of an H2 O2 permeable PIP aquaporin in barley and a serine residue promoting H2 O2 transport.	Physiol Plant	159(1)	120-128	2017		
43850	27697785	Mickelson-Young L., Wear E., Mulvaney P., Lee T.J., Szymanski E.S., Allen G., Hanley-Bowdoin L., Thompson W.	A flow cytometric method for estimating S-phase duration in plants.	J. Exp. Bot.	67(21)	6077-6087	2016		
43851	27765484	Xie J., Huo N., Zhou S., Wang Y., Guo G., Deal K.R., Ouyang S., Liang Y., Wang Z., Xiao L., Zhu T., Hu T., Tiwari V., Zhang J., Li H., Ni Z., Yao Y., Peng H., Zhang S., Anderson O.D., McGuire P.E., Dvorak J., Luo M.C., Liu Z., Gu Y.Q., Sun Q.	Sequencing and comparative analysis of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes.	J Genet Genomics			2016		
43852	27702995	Mitra S., Mukherjee A., Wiley-Kalil A., Das S., Owen H., Reddy P.M., An? JM., James E.K., Gyaneshwar P.	A rhamnose-deficient lipopolysaccharide mutant of Rhizobium sp. IRBG74 is defective in root colonization and beneficial interactions with its flooding-tolerant hosts Sesbania cannabina and wetland rice.	J. Exp. Bot.	67(19)	5869-5884	2016		
43853	27739910	Ye C.Y., Zhang X., Chu Q., Liu C., Yu Y., Jiang W., Zhu Q.H., Fan L., Guo L.	Full-length sequence assembly reveals circular RNAs with diverse non-GT/AG splicing signals in rice.	RNA Biol		1-9	2016		
43854	27729470	?lvarez D., Vo? B., Maass D., W?st F., Schaub P., Beyer P., Welsch R.	Carotenogenesis Is Regulated by 5'UTR-Mediated Translation of Phytoene synthase Splice Variants.	Plant Physiol.	172(4)	2314-2326	2016		
43855	27747971	Minkenberg B., Xie K., Yang Y.	Discovery of rice essential genes by characterizing CRISPR-edited mutation of closely related rice MAP kinase genes.	Plant J.			2016		
43856	27701737	Sun H., Guo J., Duan Y., Zhang T., Huo H., Gong H.	Isolation and functional characterization of CsLsi1, a silicon transporter gene in Cucumis sativus.	Physiol Plant			2016		
43857	27711180	Nishimura T., Mochizuki S., Ishii-Minami N., Fujisawa Y., Kawahara Y., Yoshida Y., Okada K., Ando S., Matsumura H., Terauchi R., Minami E., Nishizawa Y.	Magnaporthe oryzae Glycine-Rich Secretion Protein, RBF1 Critically Participates in Pathogenicity through the Focal Formation of the Biotrophic Interfacial Complex.	PLoS Pathog.	12(10)	e1005921	2016		
43858	27744491	Emebiri L.C., Tan M.K., El-Bouhssini M., Wildman O., Jighly A., Tadesse W., Ogbonnaya F.C.	QTL mapping identifies a major locus for resistance in wheat to Sunn pest (Eurygaster integriceps) feeding at the vegetative growth stage.	Theor. Appl. Genet.			2016		
43859	27799937	Huang W., Yang Y.J., Hu H., Zhang S.B.	Responses of Photosystem I Compared with Photosystem II to Fluctuating Light in the Shade-Establishing Tropical Tree Species Psychotria henryi.	Front Plant Sci	7	1549	2016		
43860	27843443	Cho K., Lee H.J., Jo Y.M., Lim S.H., Rakwal R., Lee J.Y., Kim Y.M.	RNA Interference-Mediated Simultaneous Suppression of Seed Storage Proteins in Rice Grains.	Front Plant Sci	7	1624	2016		
43861	27713528	Wu C., Cui K., Wang W., Li Q., Fahad S., Hu Q., Huang J., Nie L., Peng S.	Heat-induced phytohormone changes are associated with disrupted early reproductive development and reduced yield in rice.	Sci Rep	6	34978	2016		
43862	27813561	Rahman M.H., Yu P., Zhang Y.X., Sun L.P., Wu W.X., Shen X.H., Zhan X.D., Chen D.B., Cao L.Y., Cheng S.H.	Quantitative trait loci mapping of the stigma exertion rate and spikelet number per panicle in rice (Oryza sativa L.).	Genet. Mol. Res.	15(4)		2016		
43863	27790231	Read A.C., Rinaldi F.C., Hutin M., He Y.Q., Triplett L.R., Bogdanove A.J.	Suppression of Xo1-Mediated Disease Resistance in Rice by a Truncated, Non-DNA-Binding TAL Effector of Xanthomonas oryzae.	Front Plant Sci	7	1516	2016		
43864	27785615	Swain D.M., Sahoo R.K., Srivastava V.K., Tripathy B.C., Tuteja R., Tuteja N.	Function of heterotrimeric G-protein gamma subunit RGG1 in providing salinity stress tolerance in rice by elevating detoxification of ROS.	Planta			2016	STR7,CYP20-3,ECA1,_,RLCK134,_,RGB1,_,BRD1,GAPC	OsStr7,OsCYP20-3, OsCYP-5,osECA1, OsECA1,,OsRLCK134, OsLecRK1, LecRK1,RGG1,OsWD40-80, RGbeta1,OsEE1, OsENO1, ENO1, OsEno7, Eno7, OsEno4, Eno4,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,OsGapC3, OGapC3, OsGAPDH1, GAPDH1
43865	27760223	Li P., Li F., Han Y., Yang L., Liao X., Hou M.	Asymmetric Spread of SRBSDV between Rice and Corn Plants by the Vector Sogatella furcifera (Hemiptera: Delphacidae).	PLoS ONE	11(10)	e0165014	2016		
43866	27747443	Ambastha V., Sopory S.K., Tiwari B.S., Tripathy B.C.	Photo-modulation of programmed cell death in rice leaves triggered by salinity.	Apoptosis			2016		
43867	27761320	Wei T., Chen T.C., Ho Y.T., Ronald P.C.	Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae.	PeerJ	4	e2507	2016		
43868	27840631	Gayen D., Ghosh S., Paul S., Sarkar S.N., Datta S.K., Datta K.	Metabolic Regulation of Carotenoid-Enriched Golden Rice Line.	Front Plant Sci	7	1622	2016		
43869	27734628	Paul J.Y., Khanna H., Kleidon J., Hoang P., Geijskes J., Daniells J., Zaplin E., Rosenberg Y., James A., Mlalazi B., Deo P., Arinaitwe G., Namanya P., Becker D., Tindamanyire J., Tushemereirwe W., Harding R., Dale J.	Golden bananas in the field: elevated fruit pro-Vitamin A from the expression of a single banana transgene.	Plant Biotechnol. J.			2016		
43870	27725674	Tang H., Zheng X., Li C., Xie X., Chen Y., Chen L., Zhao X., Zheng H., Zhou J., Ye S., Guo J., Liu Y.G.	Multi-step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes.	Cell Res.	27(1)	130-146	2017		
43871	27733415	Fu H., Yang D., Su W., Ma L., Shen Y., Ji G., Ye X., Wu X., Li Q.Q.	Genome-wide dynamics of alternative polyadenylation in rice.	Genome Res.	26(12)	1753-1760	2016		
43872	27775871	Zhou W., Wang X., Zhou D., Ouyang Y., Yao J.	Overexpression of the 16-kDa alpha-amylase/trypsin inhibitor RAG2 improves grain yield and quality of rice.	Plant Biotechnol. J.			2016	GLUA2,AGPS2,GLUD1,_,_,WX1,GLUB1,_	Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,GluD1, GluD-1, OsEnS-33, EnS-33,,RAG2, RA14B, RA14, OsEnS-98,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,GluB1, GluB1-A, GluB-1, OsGluB1,
43873	27965027	Yang R., Li Y., Su Y., Shen Y., Tang D., Luo Q., Cheng Z.	A functional centromere lacking CentO sequences in a newly formed ring chromosome in rice.	J Genet Genomics	43(12)	694-701	2016		
43874	27793713	Brambilla V., Fornara F.	Y flowering? Regulation and activity of CONSTANS and CCT-domain proteins in Arabidopsis and crop species.	Biochim. Biophys. Acta			2016		
43875	27755575	Zhong S., Ma L., Fatima S.A., Yang J., Chen W., Liu T., Hu Y., Li Q., Guo J., Zhang M., Lei L., Li X., Tang S., Luo P.	Collinearity Analysis and High-Density Genetic Mapping of the Wheat Powdery Mildew Resistance Gene Pm40 in PI 672538.	PLoS ONE	11(10)	e0164815	2016		
43876	27752792	Yu J.H., Li Y.Y., Xiang M., Zhu J.Q., Huang X.H., Wang W.J., Tan R., Zhou J.Y., Liao H.	Molecular cloning and characterization of alpha-amylase/subtilisin inhibitor from rhizome of Ligusticum chuanxiong.	Biotechnol. Lett.	39(1)	141-148	2017		
43877	27774087	Rodrigues E.P., Soares C.P., Galv?o PG., Imada E.L., Sim?es-Ara?jo JL., Rouws L.F., de Oliveira AL., Vidal M.S., Baldani J.I.	Identification of Genes Involved in Indole-3-Acetic Acid Biosynthesis by Gluconacetobacter diazotrophicus PAL5 Strain Using Transposon Mutagenesis.	Front Microbiol	7	1572	2016		
43878	27796586	Nguyen T.D., Moon S., Oo M.M., Tayade R., Soh M.S., Song J.T., Oh S.A., Jung K.H., Park S.K.	Application of rice microspore-preferred promoters to manipulate early pollen development in Arabidopsis: a heterologous system.	Plant Reproduction	29(4)	291-300	2016	_,_,_,BGAL5,_,_,GELP59,_,_	RMP9,RMP2,RMP4,OsBgal5, OsBGal5, RMP1 ,RMP8,RMP3,OsGELP59, RMP7,RMP5,RMP6
43879	27706188	Zhao K., Ren F., Han F., Liu Q., Wu G., Xu Y., Zhang J., Wu X., Wang J., Li P., Shi W., Zhu H., Lv J., Zhao X., Tang X.	Edible Safety Assessment of Genetically Modified Rice T1C-1 for Sprague Dawley Rats through Horizontal Gene Transfer, Allergenicity and Intestinal Microbiota.	PLoS ONE	11(10)	e0163352	2016		
43880	27704482	Wang H., Ye S., Mou T.	Molecular Breeding of Rice Restorer Lines and Hybrids for Brown Planthopper (BPH) Resistance Using the Bph14 and Bph15 Genes.	Rice (N Y)	9(1)	53	2016		
43881	27780273	Zhang W., Cao Z., Zhou Q., Chen J., Xu G., Gu J., Liu L., Wang Z., Yang J., Zhang H.	Grain Filling Characteristics and Their Relations with Endogenous Hormones in Large- and Small-Grain Mutants of Rice.	PLoS ONE	11(10)	e0165321	2016		
43882	27745656	Singh N., Srivastava S., Rathaur S., Singh N.	Assessing the bioremediation potential of arsenic tolerant bacterial strains in rice rhizosphere interface.	J Environ Sci (China)	48	112-119	2016		
43883	27764161	Liu X., Wei X., Sheng Z., Jiao G., Tang S., Luo J., Hu P.	Polycomb Protein OsFIE2 Affects plant height and grain yield in Rice.	PLoS ONE	11(10)	e0164748	2016		
43884	27287092	Ngo V.D., Luu T.D., Van Vo T., Tran V.T., Duan W., Tran P.H., Tran T.T.	An investigation of effects of modification processes on physical properties and mechanism of drug release for sustaining drug release from modified rice.	Mater Sci Eng C Mater Biol Appl	67	1-7	2016		
43885	27812419	Huang Z., Jin S.H., Guo H.D., Zhong X.J., He J., Li X., Jiang M.Y., Yu X.F., Long H., Ma M.D., Chen Q.B.	Genome-wide identification and characterization of TIFY family genes in Moso Bamboo (Phyllostachys edulis) and expression profiling analysis under dehydration and cold stresses.	PeerJ	4	e2620	2016		
43886	27872859	Hu B.L., Xie J.K., Wan Y., Zhang J.W., Zhang F.T., Li X.	Mapping QTLs for Fertility Restoration of Different Cytoplasmic male sterility Types in Rice Using Two Oryza sativa ~O. rufipogon Backcross Inbred Line Populations.	Biomed Res Int	2016	9236573	2016		
43887	27738714	Gahlaut V., Jaiswal V., Kumar A., Gupta P.K.	Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.).	Theor. Appl. Genet.	129(11)	2019-2042	2016		
43888	27826313	Yuan S., Li R., Wang L., Chen H., Zhang C., Chen L., Hao Q., Shan Z., Zhang X., Chen S., Yang Z., Qiu D., Zhou X.	Search for Nodulation and Nodule Development-Related Cystatin Genes in the Genome of Soybean (Glycine max).	Front Plant Sci	7	1595	2016		
43889	27716126	Prakash C., Mithra S.V., Singh P.K., Mohapatra T., Singh N.K.	Unraveling the molecular basis of oxidative stress management in a drought tolerant rice genotype Nagina 22.	BMC Genomics	17(1)	774	2016		
43890	27729476	Paul S., Gayen D., Datta S.K., Datta K.	Analysis of high iron rice lines reveals new miRNAs that target iron transporters in roots.	J. Exp. Bot.	67(19)	5811-5824	2016		
43891	27764111	Wu Y., Wang Y., Mi X.F., Shan J.X., Li X.M., Xu J.L., Lin H.X.	The QTL GNP1 Encodes GA20ox1, Which Increases grain number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems.	PLoS Genet.	12(10)	e1006386	2016	GA20OX1	OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1
43892	27723774	Li T., Ali J., Marcaida M., Angeles O., Franje N.J., Revilleza J.E., Manalo E., Redo?a E., Xu J., Li Z.	Combining Limited Multiple Environment Trials Data with Crop Modeling to Identify Widely Adaptable Rice Varieties.	PLoS ONE	11(10)	e0164456	2016		
43893	27725719	Kalaivani K., Kalaiselvi M.M., Senthil-Nathan S.	Effect of methyl salicylate (MeSA), an elicitor on growth, physiology and pathology of resistant and susceptible rice varieties.	Sci Rep	6	34498	2016		
43894	27816829	Herath V.	Small family, big impact: In silico analysis of DREB2 transcription factor family in rice.	Comput Biol Chem	65	128-139	2016		
43895	27578842	Yang C., Ma Y., Li J.	The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.	J. Exp. Bot.	67(18)	5545-5556	2016		
43896	27634462	Bonato P., Alves L.R., Osaki J.H., Rigo L.U., Pedrosa F.O., Souza E.M., Zhang N., Schumacher J., Buck M., Wassem R., Chubatsu L.S.	The NtrY-NtrX two-component system is involved in controlling nitrate assimilation in Herbaspirillum seropedicae strain SmR1.	FEBS J.	283(21)	3919-3930	2016		
43897	27714836	Wang Y., Dai P., Chen X., Romeis J., Shi J., Peng Y., Li Y.	Ingestion of Bt rice pollen does not reduce the survival or hypopharyngeal gland development of Apis mellifera adults.	Environmental Toxicology and Chemistry			2016		
43898	27984138	Gani A., Ashwar B.A., Akhter G., Shah A., Wani I.A., Masoodi F.A.	Physico-chemical, structural, pasting and thermal properties of starches of fourteen Himalayan rice cultivars.	Int. J. Biol. Macromol.	95	1101-1107	2017		
43899	27771250	Toyomasu T., Miyamoto K., Shenton M.R., Sakai A., Sugawara C., Horie K., Kawaide H., Hasegawa M., Chuba M., Mitsuhashi W., Yamane H., Kurata N., Okada K.	Characterization and evolutionary analysis of ent-kaurene synthase like genes from the wild rice species Oryza rufipogon.	Biochem. Biophys. Res. Commun.	480(3)	402-408	2016		
43900	27924127	Ashraf H., Husaini A.M., Ashraf Bhat M., Parray G.A., Khan S., Ganai N.A.	SSR based genetic diversity of pigmented and aromatic rice (Oryza sativa L.) genotypes of the western Himalayan region of India.	Physiol Mol Biol Plants	22(4)	547-555	2016		
43901	27696287	De Leon TB., Linscombe S., Subudhi P.K.	Molecular Dissection of Seedling Salinity Tolerance in Rice (Oryza sativa L.) Using a High-Density GBS-Based SNP Linkage Map.	Rice (N Y)	9(1)	52	2016		
43902	27733118	Li W., Chen M., Wang E., Hu L., Hawkesford M.J., Zhong L., Chen Z., Xu Z., Li L., Zhou Y., Guo C., Ma Y.	Genome-wide analysis of autophagy-associated genes in foxtail millet (Setaria italica L.) and characterization of the function of SiATG8a in conferring tolerance to nitrogen starvation in rice.	BMC Genomics	17(1)	797	2016		
43903	27756006	Wang F., Liu J., Zhou L., Pan G., Li Z., Zaidi S.H., Cheng F.	Senescence-specific change in ROS scavenging enzyme activities and regulation of various SOD isozymes to ROS levels in psf mutant rice leaves.	Plant Physiol. Biochem.	109	248-261	2016		
43904	27813582	Lee K.J., Kwon S.J., Hwang J.E., Han S.M., Jung I., Kim J.B., Choi H.I., Ryu J., Kang S.Y.	Genome-wide expression analysis of a rice mutant line under salt stress.	Genet. Mol. Res.	15(4)		2016		
43905	27924028	Dierckxsens N., Mardulyn P., Smits G.	NOVOPlasty: de novo assembly of organelle genomes from whole genome data.	Nucleic Acids Res.			2016		
43906	27775031	Melonek J., Stone J.D., Small I.	Evolutionary plasticity of restorer-of-fertility-like proteins in rice.	Sci Rep	6	35152	2016		
43907	27757115	Zhang P., Zhong K., Tong H., Shahid M.Q., Li J.	Association Mapping for Aluminum Tolerance in a Core Collection of Rice Landraces.	Front Plant Sci	7	1415	2016		
43908	27720675	Okumura M., Fujitani Y., Maekawa M., Charoenpanich J., Murage H., Kimbara K., Sahin N., Tani A.	Cultivable Methylobacterium species diversity in rice seeds identified with whole-cell matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis.	J. Biosci. Bioeng.			2016		
43909	27722771	Singh S.P., Keller B., Gruissem W., Bhullar N.K.	Rice NICOTIANAMINE SYNTHASE 2 expression improves dietary iron and zinc levels in wheat.	Theor. Appl. Genet.			2016		
43910	27704315	Ray S., Basu S., Rivera-Vega LJ., Acevedo F.E., Louis J., Felton G.W., Luthe D.S.	Lessons from the Far End: Caterpillar FRASS-Induced Defenses in Maize, Rice, Cabbage, and Tomato.	J. Chem. Ecol.	42(11)	1130-1141	2016		
43911	27744227	Lavinsky A.O., Detmann K.C., Reis J.V., ?vila RT., Sanglard M.L., Pereira L.F., Sanglard L.M., Rodrigues F.A., Ara?jo WL., DaMatta F.M.	Silicon improves rice grain yield and photosynthesis specifically when supplied during the reproductive growth stage.	J. Plant Physiol.	206	125-132	2016		
43912	27767093	Mieulet D., Jolivet S., Rivard M., Cromer L., Vernet A., Mayonove P., Pereira L., Droc G., Courtois B., Guiderdoni E., Mercier R.	Turning rice meiosis into mitosis.	Cell Res.	26(11)	1242-1254	2016		
43913	27807437	Balakrishnan D., Subrahmanyam D., Badri J., Raju A.K., Rao Y.V., Beerelli K., Mesapogu S., Surapaneni M., Ponnuswamy R., Padmavathi G., Babu V.R., Neelamraju S.	Genotype ~ Environment Interactions of Yield Traits in Backcross Introgression Lines Derived from Oryza sativa cv. Swarna/Oryza nivara.	Front Plant Sci	7	1530	2016		
43914	27694332	Kurniasih B., Greenway H., Colmer T.D.	Energetics of acclimation to NaCl by submerged, anoxic rice seedlings.	Ann. Bot.	119(1)	129-142	2017		
43915	27843741	Diyabalanage S., Navarathna T., Abeysundara H.T., Rajapakse S., Chandrajith R.	Trace elements in native and improved paddy rice from different climatic regions of Sri Lanka: implications for public health.	Springerplus	5(1)	1864	2016		
43916	27586643	Macovei A., Sahoo R.K., Fa? M., Balestrazzi A., Carbonera D., Tuteja N.	Overexpression of PDH45 or SUV3 helicases in rice leads to delayed leaf senescence-associated events.	Protoplasma			2016		
43917	27968990	Chang Z., Chen Z., Yan W., Xie G., Lu J., Wang N., Lu Q., Yao N., Yang G., Xia J., Tang X.	An ABC transporter, OsABCG26, is required for anther cuticle and pollen exine formation and pollen-pistil interactions in rice.	Plant Sci.	253	21-30	2016	WDA1,OSC4,OSC6,ABCG15,ABCG26,CYP704B2,UDT1	OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsABCG26,OsCYP704B2,Udt1, bHLH164, OsUDT1, OsbHLH164 
43918	27733859	Domingo C., Lalanne E., Catal? MM., Pla E., Reig-Valiente JL., Tal?n M.	Physiological Basis and Transcriptional Profiling of Three Salt-Tolerant Mutant Lines of Rice.	Front Plant Sci	7	1462	2016		
43919	27795689	Busungu C., Taura S., Sakagami J.I., Ichitani K.	Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14, a mutant line from IR24.	Breed. Sci.	66(4)	636-645	2016	XA42	xa42
43920	27599761	Wicker T., Yu Y., Haberer G., Mayer K.F., Marri P.R., Rounsley S., Chen M., Zuccolo A., Panaud O., Wing R.A., Roffler S.	DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses.	Nat Commun	7	12790	2016		
43921	27614468	Zhang X., Zheng X., Ke S., Zhu H., Liu F., Zhang Z., Peng X., Guo L., Zeng R., Hou P., Liu Z., Wu S., Song M., Yang J., Zhang G.	ER-localized adenine nucleotide transporter ER-ANT1: an integrator of energy and stress signaling in rice.	Plant Mol. Biol.	92(6)	701-715	2016	_,BZIP60,_,_,IRE1,SPS1,_,UGP1,CFBP2,HSP90,_,BZIP39,_,_,_,ERANT1,_,_,_,_,CIPK15,CNX	,OsbZIP60, bZIP60,OsBiP4, BiP4, OsMed37_5, Med37_5, BiP2,PDIL2;3, PDIL2-3, PDIL 2-3, OsPDIL2-3, PDIL 2-3,IRE1, OsIRE1, OsIre1,sps1, OsSPS1, SPS,PM-ANT,Ugp1, OsUgp1, UGP2, UGP3,OscFBP2, cFBP2,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94,CRO1, CRT,OsbZIP39, bZIP39,SnRK1,SnRK2,,ER-ANT1,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,SEC61,BiP3,Stt3a, STT3,OsCIPK15,OsCNX, OsCNX1, CNX1
43922	27646344	Huang L., Hong Y., Zhang H., Li D., Song F.	Rice NAC transcription factor ONAC095 plays opposite roles in drought and cold stress tolerance.	BMC Plant Biol.	16(1)	203	2016		
43923	27703843	Thomas N.C., Schwessinger B., Liu F., Chen H., Wei T., Nguyen Y.P., Shaker I.W., Ronald P.C.	XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.	PeerJ	4	e2446	2016		
43924	27621428	Wu D., Yamaji N., Yamane M., Kashino-Fujii M., Sato K., Feng Ma J.	The HvNramp5 Transporter Mediates Uptake of Cadmium and Manganese, But Not Iron.	Plant Physiol.	172(3)	1899-1910	2016		
43925	27622467	Zhang J., Chen L.L., Sun S., Kudrna D., Copetti D., Li W., Mu T., Jiao W.B., Xing F., Lee S., Talag J., Song J.M., Du B., Xie W., Luo M., Maldonado C.E., Goicoechea J.L., Xiong L., Wu C., Xing Y., Zhou D.X., Yu S., Zhao Y., Wang G., Yu Y., Luo Y., Hurtado B.E., Danowitz A., Wing R.A., Zhang Q.	Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data.	Sci Data	3	160076	2016		
43926	27795687	Hossain M.K., Jena K.K., Bhuiyan M.A., Wickneswari R.	Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.).	Breed. Sci.	66(4)	613-626	2016		
43927	27643852	Zhang K., Xu W., Wang C., Yi X., Zhang W., Su Z.	Differential deposition of H2A.Z in combination with histone modifications within related genes in rice callus and seedling.	Plant J.			2016		
43928	27618611	Li J., Meng X., Zong Y., Chen K., Zhang H., Liu J., Li J., Gao C.	Gene replacements and insertions in rice by intron targeting using CRISPR-Cas9.	Nat Plants	2	16139	2016		
43929	27670771	He W., Fang N., Wang R., Wu Y., Zeng G., Guan C., Chen H., Huang J., Wang J., Bao Y., Zhang H.	Fine mapping of a new race-specific blast resistance gene Pi-hk2 in Japonica Heikezijing from Taihu region of China.	Phytopathology			2016		
43930	27633505	Banakar R., Alvarez Fern?ndez ?., Abad?a J., Capell T., Christou P.	The expression of heterologous Fe (III) phytosiderophore transporter HvYS1 in rice increases Fe uptake, translocation and seed loading and excludes heavy metals by selective Fe transport.	Plant Biotechnol. J.			2016		
43931	27600536	Lowe K., Wu E., Wang N., Hoerster G., Hastings C., Cho M.J., Scelonge C., Lenderts B., Chamberlin M., Cushatt J., Wang L., Ryan L., Khan T., Chow-Yiu J., Hua W., Yu M., Banh J., Bao Z., Brink K., Igo E., Rudrappa B., Shamseer P.M., Bruce W., Newman L., Shen B., Zheng P., Bidney D., Falco S.C., RegisterIII JC., Zhao Z.Y., Xu D., Jones T.J., Gordon-Kamm WJ.	Morphogenic Regulators Baby boom and Wuschel Improve Monocot Transformation.	Plant Cell			2016		
43932	27606959	Jin L., Qin Q., Wang Y., Pu Y., Liu L., Wen X., Ji S., Wu J., Wei C., Ding B., Li Y.	Rice Dwarf Virus P2 Protein Hijacks Auxin Signaling by Directly Targeting the Rice OsIAA10 Protein, Enhancing Viral Infection and Disease Development.	PLoS Pathog.	12(9)	e1005847	2016		
43933	27658241	Shirke M.D., Mahesh H.B., Gowda M.	Genome-Wide Comparison of Magnaporthe Species Reveals a Host-Specific Pattern of Secretory Proteins and Transposable Elements.	PLoS ONE	11(9)	e0162458			
43934	26747650	Lung S.C., Chye M.L.	The binding versatility of plant acyl-CoA-binding proteins and their significance in lipid metabolism.	Biochim. Biophys. Acta	1861(9 Pt B)	1409-21	2016		
43935	27708655	Zhang Y.X., Xu H.H., Liu S.J., Li N., Wang W.Q., M?ller IM., Song S.Q.	Proteomic Analysis Reveals Different Involvement of Embryo and Endosperm Proteins during Aging of Yliangyou 2 Hybrid Rice Seeds.	Front Plant Sci	7	1394	2016		
43936	27695474	Feng K., Liu F., Zou J., Xing G., Deng P., Song W., Tong W., Nie X.	Genome-Wide Identification, Evolution, and Co-expression Network Analysis of Mitogen-activated protein kinase Kinase Kinases in Brachypodium distachyon.	Front Plant Sci	7	1400	2016		
43937	27693372	Zha W., Zhou L., Li S., Liu K., Yang G., Chen Z., Liu K., Xu H., Li P., Hussain S., You A.	Characterization and comparative profiling of the small RNA transcriptomes in the Hemipteran insect Nilaparvata lugens.	Gene	595(1)	83-91	2016		
43938	27677708	Jiang S.Y., Ma A., Xie L., Ramachandran S.	Improving protein content and quality by over-expressing artificially synthetic fusion proteins with high lysine and threonine constituent in rice plants.	Sci Rep	6	34427	2016	_,_	,Prol-24, pro13a.3
43939	27708650	Zhang M., Wei F., Guo K., Hu Z., Li Y., Xie G., Wang Y., Cai X., Peng L., Wang L.	A Novel FC116/BC10 Mutation Distinctively Causes Alteration in the Expression of the Genes for Cell Wall Polymer Synthesis in Rice.	Front Plant Sci	7	1366	2016	BC10	BC10, bc10, FC116, FC116/BC10, Osbc10, Osfc116
43940	27605490	Chen W.J., Kuo T.Y., Hsieh F.C., Chen P.Y., Wang C.S., Shih Y.L., Lai Y.M., Liu J.R., Yang Y.L., Shih M.C.	Involvement of type VI secretion system in secretion of iron chelator pyoverdine in Pseudomonas taiwanensis.	Sci Rep	6	32950	2016		
43941	27647523	Mei J., Ding Y., Li Y., Tong C., Du H., Yu Y., Wan H., Xiong Q., Yu J., Liu S., Li J., Qian W.	Transcriptomic comparison between Brassica oleracea and rice (Oryza sativa) reveals diverse modulations on cell death in response to Sclerotinia sclerotiorum.	Sci Rep	6	33706	2016		
43942	27795679	Tanaka J., Hayashi T., Iwata H.	A practical, rapid generation-advancement system for rice breeding using simplified biotron breeding system.	Breed. Sci.	66(4)	542-551	2016		
43943	27671164	Ereful N.C., Liu L.Y., Tsai E., Kao S.M., Dixit S., Mauleon R., Malabanan K., Thomson M., Laurena A., Lee D., Mackay I., Greenland A., Powell W., Leung H.	Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs.	Rice (N Y)	9(1)	50	2016		
43944	27746792	Jin Q., Hu X., Li X., Wang B., Wang Y., Jiang H., Mattson N., Xu Y.	Genome-Wide Identification and Evolution Analysis of Trehalose-6-phosphate synthase Gene Family in Nelumbo nucifera.	Front Plant Sci	7	1445	2016		
43945	27608922	Cheng H., Hao M., Wang W., Mei D., Tong C., Wang H., Liu J., Fu L., Hu Q.	Genomic identification, characterization and differential expression analysis of SBP-box gene family in Brassica napus.	BMC Plant Biol.	16(1)	196	2016		
43946	27682162	Ji H., Kim S.R., Kim Y.H., Suh J.P., Park H.M., Sreenivasulu N., Misra G., Kim S.M., Hechanova S.L., Kim H., Lee G.S., Yoon U.H., Kim T.H., Lim H., Suh S.C., Yang J., An G., Jena K.K.	Map-based Cloning and Characterization of the BPH18 Gene from Wild Rice Conferring Resistance to Brown Planthopper (BPH) Insect Pest.	Sci Rep	6	34376	2016		
43947	27683727	Wang P., Zhang W., Mao C., Xu G., Zhao F.J.	The role of OsPT8 in arsenate uptake and varietal difference in arsenate tolerance in rice.	J. Exp. Bot.	67(21)	6051-6059	2016		
43948	27620639	Fiyaz R.A., Yadav A.K., Krishnan S.G., Ellur R.K., Bashyal B.M., Grover N., Bhowmick P.K., Nagarajan M., Vinod K.K., Singh N.K., Prabhu K.V., Singh A.K.	Mapping quantitative trait loci responsible for resistance to Bakanae disease in rice.	Rice (N Y)	9(1)	45	2016		
43949	27706742	Shi L., Wei X.J., Adedze Y.M., Sheng Z.H., Tang S.Q., Hu P.S., Wang J.L.	Characterization and gene cloning of the rice (Oryza sativa L.) dwarf and narrow-leaf mutant DNL3.	Genet. Mol. Res.	15(3)		2016	ND1,_,CESA11,CESA3,CSLD5,CSLF6,MCM3,BC7,_,_,CESA7,CESA5,GW8,_,CESA2	CSLD4, OsCSLD4, OsCD1, CD1, DNL3, NRL1,OsRAN2, RAN2,OsCesA11, OsCESA11, OsCLD1, CLD1,OsCesA3, OsCESA3, OS_CESA03,OsCSLD5,OsCslF6, OsCSLF6, OsCLD3, CLD3,OsMCM3,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,CDC2,CDC3,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA5, OsCESA5, OS_CESA05,SPL16, OsSPL16, SLP1, qGW8,OsRPA32, RPA32, RPA2A ,OsCesA2, OsCESA2, OS_CESA02
43950	27721133	Radhakrishnan R., Lee I.J.	Gibberellins producing Bacillus methylotrophicus KE2 supports plant growth and enhances nutritional metabolites and food values of lettuce.	Plant Physiol. Biochem.	109	181-189	2016		
43951	27670819	Kameoka H., Dun E.A., Lopez-Obando M., Brewer P.B., de Saint Germain A., Rameau C., Beveridge C.A., Kyozuka J.	Phloem Transport of the Receptor DWARF14 Protein Is Required for Full Function of Strigolactones.	Plant Physiol.	172(3)	1844-1852	2016		
43952	27681580	Mohanty B., Takahashi H., de Los Reyes BG., Wijaya E., Nakazono M., Lee D.Y.	Transcriptional regulatory mechanism of alcohol dehydrogenase 1-deficient mutant of rice for cell survival under complete submergence.	Rice (N Y)	9(1)	51	2016		
43953	27616208	Wang Y., Duan X., Xu S., Wang R., Ouyang Z., Shen W.	Linking hydrogen-mediated boron toxicity tolerance with improvement of root elongation, water status and reactive oxygen species balance: a case study for rice.	Ann. Bot.	118(7)	1279-1291	2016		
43954	27681945	Alves C.S., Vicentini R., Duarte G.T., Pinoti V.F., Vincentz M., Nogueira F.T.	Genome-wide identification and characterization of tRNA-derived RNA fragments in land plants.	Plant Mol. Biol.			2016		
43955	27659322	Cao H., Liu C.Y., Liu C.X., Zhao Y.L., Xu R.R.	Genomewide analysis of the lateral organ boundaries domain gene family in Vitis vinifera.	J. Genet.	95(3)	515-26	2016		
43956	27653809	Xiong D., Flexas J., Yu T., Peng S., Huang J.	Leaf anatomy mediates coordination of leaf hydraulic conductance and mesophyll conductance to CO2 in Oryza.	New Phytol.	213(2)	572-583	2017		
43957	27703460	Rebolledo M.C., Pe?a AL., Duitama J., Cruz D.F., Dingkuhn M., Grenier C., Tohme J.	Combining Image Analysis, Genome Wide Association Studies and Different Field Trials to Reveal Stable Genetic Regions Related to Panicle Architecture and the Number of Spikelets per Panicle in Rice.	Front Plant Sci	7	1384	2016		
43958	27652777	Park A.K., Kim I.S., Do H., Jeon B.W., Lee C.W., Roh S.J., Shin S.C., Park H., Kim Y.S., Kim Y.H., Yoon H.S., Lee J.H., Kim H.W.	Structure and catalytic mechanism of monodehydroascorbate reductase, MDHAR, from Oryza sativa L. japonica.	Sci Rep	6	33903	2016		
43959	27578792	Hibara K., Isono M., Mimura M., Sentoku N., Kojima M., Sakakibara H., Kitomi Y., Yoshikawa T., Itoh J., Nagato Y.	Jasmonate regulates juvenile-to-adult phase transition in rice.	Development	143(18)	3407-16	2016		
43960	27795683	Muto C., Ishikawa R., Olsen K.M., Kawano K., Bounphanousay C., Matoh T., Sato Y.I.	Genetic diversity of the Wx flanking region in rice landraces in northern Laos.	Breed. Sci.	66(4)	580-590	2016		
43961	27659335	Magwa R.A., Zhao H., Yao W., Xie W., Yang L., Xing Y., Bai X.	Genomewide association analysis for awn length linked to the seed shattering gene qSH1 in rice.	J. Genet.	95(3)	639-46	2016		
43962	27590335	Julia C., Wissuwa M., Kretzschmar T., Jeong K., Rose T.	Phosphorus uptake, partitioning and redistribution during grain filling in rice.	Ann. Bot.	118(6)	1151-1162	2016		
43963	27649148	Park S., Choi M.J., Lee J.Y., Kim J.K., Ha S.H., Lim S.H.	Molecular and Biochemical Analysis of Two Rice Flavonoid 3'-Hydroxylase to Evaluate Their Roles in Flavonoid Biosynthesis in Rice Grain.	Int J Mol Sci	17(9)		2016		
43964	27683092	Kudo M., Kidokoro S., Yoshida T., Mizoi J., Todaka D., Fernie A.R., Shinozaki K., Yamaguchi-Shinozaki K.	Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants.	Plant Biotechnol. J.			2016		
43965	27795684	Liu X., Zhang C., Li X., Tu J.	Pyramiding and evaluation of both a foreign Bacillus thuringiensis and a lysine-rich protein gene in the elite indica rice 9311.	Breed. Sci.	66(4)	591-598	2016		
43966	27619227	Wang S., Chen W., Yang C., Yao J., Xiao W., Xin Y., Qiu J., Hu W., Yao H., Ying W., Fu Y., Tong J., Chen Z., Ruan S., Ma H.	Comparative proteomic analysis reveals alterations in development and photosynthesis-related proteins in diploid and triploid rice.	BMC Plant Biol.	16(1)	199	2016		
43967	27968995	Hashida Y., Hirose T., Okamura M., Hibara K.I., Ohsugi R., Aoki N.	A reduction of sucrose phosphate synthase (SPS) activity affects sucrose/starch ratio in leaves but does not inhibit normal plant growth in rice.	Plant Sci.	253	40-49	2016		
43968	27717164	Liu Y., Jiang W., Liang Y., Zhao C., Li J.	No effect of Bt-transgenic rice litter on the meiobenthos community in field ditches.	Pest Manag. Sci.			2016		
43969	27649324	Ciarkowska A., Ostrowski M., Jakubowska A.	Abiotic stress and phytohormones affect enzymic activity of 1-O-(indole-3-acetyl)-beta-d-glucose: myo-inositol indoleacetyl transferase from rice (Oryza sativa).	J. Plant Physiol.	205	93-96	2016		
43970	27795685	Zhao M., Sun J., Xiao Z., Cheng F., Xu H., Tang L., Chen W., Xu Z., Xu Q.	Variations in DENSE AND ERECT PANICLE 1 (DEP1) contribute to the diversity of the panicle trait in high-yielding japonica rice varieties in northern China.	Breed. Sci.	66(4)	599-605	2016		
43971	27716929	Kim C.M., Han C.D., Dolan L.	RSL class I genes positively regulate root hair development in Oryza sativa.	New Phytol.	213(1)	314-323	2017	_,_,_,_,_,_,_,_,_	OsbHLH132, bHLH132, OsRSL7, RSL7,OsbHLH127, bHLH127, OsRSL3, RSL3,OsbHLH129, bHLH129, OsRSL4, RSL4,OsbHLH133, bHLH133, OsRSL8, RSL8,OsbHLH130, bHLH130, OsRSL9, RSL9,OsbHLH126, bHLH126, OsRSL2, RSL2,OsbHLH131, bHLH131, OsRSL5, RSL5,OsbHLH128, bHLH128, OsRSL6, RSL6,OsbHLH125, bHLH125, OsRSL1, RSL1 
43972	27689766	Wu F., Shi X., Lin X., Liu Y., Chong K., Thei?en G., Meng Z.	The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.	Plant J.			2016		
43973	27644410	Tang T., Yu A., Li P., Yang H., Liu G., Liu L.	Sequence analysis of the Hsp70 family in moss and evaluation of their functions in abiotic stress responses.	Sci Rep	6	33650	2016		
43974	27628577	Shen L., Wang C., Fu Y., Wang J., Liu Q., Zhang X., Yan C., Qian Q., Wang K.	QTL editing confers opposing yield performance in different rice varieties.	J Integr Plant Biol			2016		
43975	27684490	Tan X., Zhou X., Tang Y., Lv J., Zhang L., Sun L., Yang Y., Miao Y., Jiang H., Chen G., Huang Z., Wang X.	Immunotoxicological Evaluation of Genetically Modified Rice Expressing Cry1Ab/Ac Protein (TT51-1) by a 6-Month Feeding Study on Cynomolgus Monkeys.	PLoS ONE	11(9)	e0163879			
43976	27603678	Chen C., He W., Nassirou T.Y., Zhou W., Yin Y., Dong X., Rao Q., Shi H., Zhao W., Efisue A., Jin D.	Genetic Diversity and Phenotypic Variation in an Introgression Line Population Derived from an Interspecific Cross between Oryza glaberrima and Oryza sativa.	PLoS ONE	11(9)	e0161746	2016		
43977	27600710	Liu D., Tago K., Hayatsu M., Tokida T., Sakai H., Nakamura H., Usui Y., Hasegawa T., Asakawa S.	Effect of Elevated CO2 Concentration, Elevated Temperature and No Nitrogen Fertilization on Methanogenic Archaeal and Methane-Oxidizing Bacterial Community Structures in Paddy Soil.	Microbes and Environments	31(3)	349-56	2016		
43978	27708649	Abe K., Ichikawa H.	Gene Overexpression Resources in Cereals for Functional Genomics and Discovery of Useful Genes.	Front Plant Sci	7	1359	2016		
43979	27641772	Wang R., Ning Y., Shi X., He F., Zhang C., Fan J., Jiang N., Zhang Y., Zhang T., Hu Y., Bellizzi M., Wang G.L.	Immunity to Rice Blast Disease by Suppression of Effector-Triggered Necrosis.	Curr. Biol.	26(18)	2399-411	2016	BZIP53,PIZT,_,MT2B	OsbZIP53, APIP5 ,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,OsHLM1, HLM1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8
43980	27585744	Chen F., Dong G., Wu L., Wang F., Yang X., Ma X., Wang H., Wu J., Zhang Y., Wang H., Qian Q., Yu Y.	A Nucleus-Encoded Chloroplast Protein YL1 Is Involved in Chloroplast Development and Efficient Biogenesis of Chloroplast ATP synthase in Rice.	Sci Rep	6	32295	2016	_,RPOA,YL1,V3,SIG2A,RPS15,VYL,RPS15,V1,V2	atpB, AtpB, atpcf1, ATPbeta,RpoA,,v3, RNRL1, rnrl1, RNR1, RNRL,OsSIG2A, OsSig2A,rps15,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,rps15,v1, NUS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK
43981	27639667	Krishnan R., Menon R.R., Likhitha, Busse H.J., Tanaka N., Krishnamurthi S., Rameshkumar N.	Novosphingobium pokkalii sp nov, a novel rhizosphere-associated bacterium with plant beneficial properties isolated from saline-tolerant pokkali rice.	Res. Microbiol.			2016		
43982	27614049	Mark Cigan A., Singh M., Benn G., Feigenbutz L., Kumar M., Cho M.J., Svitashev S., Young J.	Targeted mutagenesis of a conserved anther-expressed P450 gene confers male sterility in monocots.	Plant Biotechnol. J.			2016		
43983	27716056	Fang Y., Wang L., Wang X., You Q., Pan X., Xiao J., Wang X.E., Wu Y., Su Z., Zhang W.	Histone modifications facilitate the coexpression of bidirectional promoters in rice.	BMC Genomics	17(1)	768	2016		
43984	27746797	Agrawal L., Gupta S., Mishra S.K., Pandey G., Kumar S., Chauhan P.S., Chakrabarty D., Nautiyal C.S.	Elucidation of Complex Nature of PEG Induced Drought-Stress Response in Rice Root Using Comparative Proteomics Approach.	Front Plant Sci	7	1466	2016		
43985	27695876	Hori K., Matsubara K., Yano M.	Genetic control of flowering time in rice: integration of Mendelian genetics and genomics.	Theor. Appl. Genet.	129(12)	2241-2252	2016		
43986	27598392	Roy P.S., Rao G.J., Jena S., Samal R., Patnaik A., Patnaik S.S., Jambhulkar N.N., Sharma S., Mohapatra T.	Nuclear and Chloroplast DNA Variation Provides Insights into Population Structure and Multiple Origin of Native Aromatic Rices of Odisha, India.	PLoS ONE	11(9)	e0162268	2016		
43987	27876244	Tang M., Zhou C., Meng L., Mao D., Peng C., Zhu Y., Huang D., Tan Z., Chen C., Liu C., Zhang D.	Overexpression of OsSPL9 enhances accumulation of Cu in rice grain and improves its digestibility and metabolism.	J Genet Genomics	43(11)	673-676	2016		
43988	27795680	Nguyen H., Chen X.Y., Jiang M., Wang Q., Deng L., Zhang W.Z., Shu Q.Y.	Development and molecular characterization of a doubled haploid population derived from a hybrid between japonica rice and wide compatible indica rice.	Breed. Sci.	66(4)	552-559	2016		
43989	27688090	Suharti W.S., Nose A., Zheng S.H.	Metabolomic study of two rice lines infected by Rhizoctonia solani in negative ion mode by CE/TOF-MS.	J. Plant Physiol.	206	13-24	2016		
43990	27624829	Somssich M., Je B.I., Simon R., Jackson D.	CLAVATA-WUSCHEL signaling in the shoot meristem.	Development	143(18)	3238-48	2016		
43991	27677080	Syu C.H., Chien P.H., Huang C.C., Jiang P.Y., Juang K.W., Lee D.Y.	The growth and uptake of Ga and In of rice (Oryza sative L.) seedlings as affected by Ga and In concentrations in hydroponic cultures.	Ecotoxicol. Environ. Saf.	135	32-39	2017		
43992	27649618	Wang X., Li L., Yang Z., Zheng X., Yu S., Xu C., Hu Z.	Predicting rice hybrid performance using univariate and multivariate GBLUP models based on North Carolina mating design II.	Heredity			2016		
43993	27729916	Vandamme E., Wissuwa M., Rose T., Dieng I., Drame K.N., Fofana M., Senthilkumar K., Venuprasad R., Jallow D., Segda Z., Suriyagoda L., Sirisena D., Kato Y., Saito K.	Genotypic Variation in Grain P Loading across Diverse Rice Growing Environments and Implications for Field P Balances.	Front Plant Sci	7	1435	2016		
43994	18759033	Zhou B., Peng K., Zhaohui C., Wang S., Zhang Q.	The defense-responsive genes showing enhanced and repressed expression after pathogen infection in rice (Oryza sativa L.).	Science in China. Series C, Life sciences	45(5)	449-67	2002	_	OsAFC2, AFC2, OsDR11, DR11, OsDR11L, OsDR11S
43995	26190741	Zhang H., Xia R., Blake C Meyers, Walbot V.	Evolution, functions, and mysteries of plant ARGONAUTE proteins.	Curr. Opin. Plant Biol.	27	84-90	2015	_	OsAGO2b, AGO2b
43996	18612237	Young-Soon Cha, Ji H., Doh-Won Yun, Byoung-Ohg Ahn, Myung Chul Lee, Seok-Cheol Suh, Chun Seok Lee, Eok Keun Ahn, Yong-Hee Jeon, Il-Doo Jin, Jae-Keun Sohn, Hee-Jong Koh, Moo-Young Eun	Fine mapping of the rice Bph1 gene, which confers resistance to the brown planthopper (Nilaparvata lugens stal), and development of STS markers for marker-assisted selection.	Mol. Cells	26(2)	146-51	2008	BPH1	Bph1
43997	23136524	Heang D., Sassa H.	An atypical bHLH protein encoded by POSITIVE REGULATOR OF GRAIN LENGTH 2 is involved in controlling grain length and weight of rice through interaction with a typical bHLH protein APG	Breed. Sci.	62	133-141	2012	PIL16,ILI5,BU1	APG, OsPIL16, OsbHLH106,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172
43998	0	Li N., Kong L., Zhou W., Zhang X., Wei S., Ding X., Chu Z.	Overexpression of Os2H16 enhances resistance to phytopathogens and tolerance to drought stress in rice	Plant Cell, Tissue and Organ Culture (PCTOC)	115(3)	429-441	2013	_	Os2H16, 2H16
43999	15695464	Ohwaki Y., Makiko Kawagishi-Kobayashi, Wakasa K., Fujihara S., Yoneyama T.	Induction of class-1 non-symbiotic hemoglobin genes by nitrate, nitrite and nitric oxide in cultured rice cells.	Plant Cell Physiol.	46(2)	324-31	2005	Hb1,Hb2	HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
44000	28211849	Hu K., Cao J., Zhang J., Xia F., Ke Y., Zhang H., Xie W., Liu H., Cui Y., Cao Y., Sun X., Xiao J., Li X., Zhang Q., Wang S.	Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement.	Nat Plants	3	17009	2017	XA4,JAR2,CESA7,BC6,BC7,EXPA5,EXPA1	Xa4, Xa4(Xa4a), Xa-4, Xa4-a, WAK, wak, xa4,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsEXPA5, OsEXP5, osaEXPa1.20,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA
44001	28442795	Stewart C.N.	Becoming weeds.	Nat. Genet.	49(5)	654-655	2017		
44002	28369039	Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.	Signatures of adaptation in the weedy rice genome.	Nat. Genet.	49(5)	811-814	2017	WX1,AN1,C,COLD1,SH4,PROG1,BHC,RC,LABA1,BH4,LG1,qSH1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,OsPROG1,Ph=Bhc(Po), Bhc, Po, Ph, Bh3, PPO, Phr1, BH1,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,LOGL6, OsLOGL6, An-2,Bh4, OsATL14, ATL14,SPL8, OsSPL8, OsLG1,qSH1, qsh1, qSH-1
44003	28390989	Zhang M., Chen Y., Nie L., Jin X., Fu C., Yu L.	Molecular, structural, and phylogenetic analyses of Taxus chinensis JAZs.	Gene			2017		
44004	28407265	Xu J., Shi S., Wang L., Tang Z., Lv T., Zhu X., Ding X., Wang Y., Zhao F.J., Wu Z.	OsHAC4 is critical for arsenate tolerance and regulates arsenic accumulation in rice.	New Phytol.			2017	STR8,PHF1	OsStr8, OsHAC4, HAC4 ,OsPHF1, OsWD40-137, OsSEC12
44005	28385155	Yu J., Xiong H., Zhu X., Zhang H., Li H., Miao J., Wang W., Tang Z., Zhang Z., Yao G., Zhang Q., Pan Y., Wang X., Rashid M.A.R., Li J., Gao Y., Li Z., Yang W., Fu X., Li Z.	OsLG3 contributing to rice grain length and yield was mined by Ho-LAMap.	BMC Biol.	15(1)	28	2017	ERF62	OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125
44006	28065924	Wang B., Wei H., Xue Z., Zhang W.H.	Gibberellins regulate iron deficiency-response by influencing iron transport and translocation in rice seedlings (Oryza sativa).	Ann. Bot.	119(6)	945-956	2017	_,YSL15,NAS1,YSL2,NAAT1,NAS2,EUI1,DMAS1	OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL15, OsYs7,OsNAS1,OsYSL2, Os-YSL2, OsYs6 ,OsNAAT1,OsNAS2,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsDMAS1
44007	28413359	Morino K., Kimizu M., Fujiwara M.	Disulfide proteomics of rice cultured cells in response to OsRacl and probenazole-related immune signaling pathway in rice.	Proteome Sci	15	6	2016	CMDH,_,AMY3E,APX1,RAC1,RACK1,TRXH,_	OscMDH, cMDH, OsMDH, MDH,OsAKR, AKR,Amy3D/E*(RAmy3D/E), alpha Amy8, alphaAmy8, AmyII-3, AMY1.4, Amy3E, Amy3D/E*, RAmy3D/E, Amy9, RAmy3E, alphaAmy8-C, AMY3E/AMY1.4 ,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsCSP2, CPS2
44008	28444616	Kim J.S., Chae S., Jun K.M., Pahk Y.M., Lee T.H., Chung P.J., Kim Y.K., Nahm B.H.	Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice.	Rice (N Y)	10(1)	16	2017	_,RISBZ1,_,GLB1,NAC24,RPBF,_,WX1	OsEnS-146, EnS-146, OsEnS146, EnS146 ,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,OsEnS-44, EnS-44, OsEnS44, EnS44,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,NAC94, ONAC024, ONAC24,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsEnS-20, OspPLAIIalpha, pPLAIIalpha, PAT2, PAT,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
44009	28471368	Guo Z.H., Chan W.H.Y., Kong G.K.W., Hao Q., Chye M.L.	The first plant acyl-CoA-binding protein structures: the close homologues OsACBP1 and OsACBP2 from rice.	Acta Crystallogr D Struct Biol	73(Pt 5)	438-448	2017	_,_	OsACBP1, ACBP1,OsACBP2, ACBP2
44010	28414264	Deng C., Ye H., Fan M., Pu T., Yan J.	The Rice Transcription Factors OsICE Confer Enhanced cold tolerance in Transgenic Arabidopsis.	Plant Signal Behav		0	2017	_,_,_	OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,OsMYBS3, MYBS3,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1
44011	28482332	Lee S.C., Kim S.J., Han S.K., An G., Kim S.R.	A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and alpha-amylase expression in rice.	J. Plant Physiol.	214	116-122	2017	_	OsGASR1, GASR1
44012	28451936	Zhang W., Wu L., Ding Y., Yao X., Wu X., Weng F., Li G., Liu Z., Tang S., Ding C., Wang S.	Nitrogen fertilizer application affects lodging resistance by altering secondary cell wall synthesis in japonica rice (Oryza sativa).	J. Plant Res.			2017	4CL3,CESA7,ROMT9,PAL1,CCR20,BC7,FC1,BC6,GH2	Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsCAD7, fc1, CAD7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,gh2, CAD2, CAD, OsCAD2, GH2 
44013	28385728	Lam P.Y., Tobimatsu Y., Takeda Y., Suzuki S., Yamamura M., Umezawa T., Lo C.	Disrupting flavone synthase II Alters Lignin and Improves Biomass Digestibility.	Plant Physiol.			2017	CYP93G1,CYP75B4	OsCYP93G1, OsFNSII, FNSII,OsCYP75B4, OsC5'H, C5'H 
44014	28401568	Wu J., Wang Y., Kim S.G., Jung K.H., Gupta R., Kim J., Park Y., Kang K.Y., Kim S.T.	A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa.	Physiol Plant			2017	_,_,SPK	CRO1, CRT,OsCLP, CLP,CDPK 1, CDPK1, CDPK23, OsCDPK23, OsCPK23
44015	28382520	Yang X., Liang W., Chen M., Zhang D., Zhao X., Shi J.	Rice fatty Acyl-CoA Synthetase OsACOS12 is required for tapetum programmed cell death and male fertility.	Planta			2017	API5,_,CYP703A3,GAMYB,_,CYP704B2,TDR,EAT1	API5, Os API5, OsAPI5,OsMS2, MS2, OsDPW, DPW, DPW1,OsCYP703A3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsACS9, ACS9, 4CL4, OsACOS12, ACOS12 ,OsCYP704B2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD
44016	28424874	Uji Y., Akimitsu K., Gomi K.	Identification of OsMYC2-regulated senescence-associated genes in rice.	Planta			2017	_,STR5,TIFY10C,_,_,NAC10,_	Osh69,OsStr5, OsHAC1;1, HAC1;1 ,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,Osh36, OsH36, H36, OsAMTR1, AMTR1,OsbHLH009, bHLH009, OsMYC2, MYC2,ONAC010, ONAC10, OsSTA199,OsSAG12, SAG12
44017	28421330	Takeda Y., Koshiba T., Tobimatsu Y., Suzuki S., Murakami S., Yamamura M., Rahman M.M., Takano T., Hattori T., Sakamoto M., Umezawa T.	Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.	Planta			2017	_,_,_	OsF5HL, F5HL, CYP84A7 ,OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5,OsF5HL2, F5HL2, CYP84A6, OsCYP84A6
44018	28186255	Ohashi M., Ishiyama K., Kojima S., Kojima M., Sakakibara H., Yamaya T., Hayakawa T.	Lack of Cytosolic Glutamine Synthetase1;2 Activity Reduces Nitrogen-Dependent Biosynthesis of Cytokinin Required for axillary bud Outgrowth in Rice Seedlings.	Plant Cell Physiol.	58(4)	679-690	2017	GLN1;2,IPT4	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsIPT4
44019	28412545	Shafiq S., Chen C., Yang J., Cheng L., Ma F., Widemann E., Sun Q.	DNA Topoisomerase 1 prevents R-loop accumulation to modulate auxin-regulated root development in rice.	Mol Plant			2017	ARF10,ARF24,MDR13,TOP1,ABCB13,MDR12,_,MDR10,ARF7A,ARF1,PIN1A	OsARF10,OsARF24,OsABCB14, ABCB14, OsPGP14, OsMDR13, OsABCB14_1, OsABCB14_2,OsTOP1,OsABCB13, OsPGP13,OsABCB16, ABCB16, OsPGP16, OsMDR12,OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4,OsABCB8, ABCB8, OsPGP8, OsMDR10, OsISC29,OsARF7a, OsARF19, ARF19, OsARF7,OsARF1, arf1, OsARF23, ARF23,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a
44020	28430017	Peris-Peris C., Serra-Cardona A., S?nchez-Sanuy F., Campo S., Ari?o J., San Segundo B.	Two Nramp6 Isoforms Function as Iron and Manganese Transporters and Contribute to disease resistance in Rice.	Mol. Plant Microbe Interact.	30(5)	385-398	2017	POX3006,NRAMP6,PR1A,PR10B,MIR7695	POX3006, prx114, PO-C1, POC-1, POC1,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b ,miR7695, osa-miR7695, osa-MIR7695
44021	28204743	Udomchalothorn T., Plaimas K., Sripinyowanich S., Boonchai C., Kojonna T., Chutimanukul P., Comai L., Buaboocha T., Chadchawan S.	OsNucleolin1-L Expression in Arabidopsis Enhances Photosynthesis via Transcriptome Modification under Salt Stress Conditions.	Plant Cell Physiol.	58(4)	717-734	2017	_,NUC1,_,_,_	Cyt b6, OsCytb6, Cytb6,OsNUC1, OsNUC1-S, OsNUC1-L,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,Lhcb1.1 OsLhcb1.1, lhcB,
44022	28403192	Chen J., Lin B., Huang Q., Hu L., Zhuo K., Liao J.	A novel Meloidogyne graminicola effector, MgGPP, is secreted into host cells and undergoes glycosylation in concert with proteolysis to suppress plant defenses and promote parasitism.	PLoS Pathog.	13(4)	e1006301	2017		
44023	28304228	Wang J., Tian D., Gu K., Yang X., Wang L., Zeng X., Yin Z.	Induction of Xa10-like Genes in Rice Cultivar Nipponbare Confers disease resistance to Rice Bacterial Blight.	Mol. Plant Microbe Interact.		MPMI11160229R	2017	_,XA23	Xa10-Ni,Xa23(t)*, Xa23(t), Xa23, Xa23-Ni 
44024	28429296	Selby-Pham J., Lutz A., Moreno-Moyano LT., Boughton B.A., Roessner U., Johnson A.A.T.	Diurnal Changes in Transcript and Metabolite Levels during the Iron Deficiency Response of Rice.	Rice (N Y)	10(1)	14	2017		
44025	28446247	Kasajima I.	Difference in oxidative stress tolerance between rice cultivars estimated with chlorophyll fluorescence analysis.	BMC Res Notes	10(1)	168	2017		
44026	28397859	Shen B.R., Zhu C.H., Yao Z., Cui L.L., Zhang J.J., Yang C.W., He Z.H., Peng X.X.	An optimized transit peptide for effective targeting of diverse foreign proteins into chloroplasts in rice.	Sci Rep	7	46231	2017		
44027	28448202	Wang H.M., Tong C.G., Jang S.	Current progress in orchid flowering/flower development research.	Plant Signal Behav		0	2017		
44028	28383047	Liu Z., Yuan G., Liu S., Jia J., Cheng L., Qi D., Shen S., Peng X., Liu G.	Identified of a novel cis-element regulating the alternative splicing of LcDREB2.	Sci Rep	7	46106	2017		
44029	28458046	Birkenbihl R.P., Liu S., Somssich I.E.	Transcriptional events defining plant immune responses.	Curr. Opin. Plant Biol.	38	1-9	2017		
44030	28400493	Qin C., Chen W.W., Shen J., Cheng L., Akande F., Zhang K., Yuan C., Li C., Zhang P., Shi N., Cheng Q., Liu Y., Jackson S., Hong Y.	A Virus-induced Assay for Functional Dissection and Analysis of Monocot and Dicot Flowering Time genes.	Plant Physiol.			2017		
44031	28413161	Zhang Q.J., Gao L.Z.	Rapid and Recent Evolution of LTR Retrotransposons Drives Rice Genome Evolution During the Speciation of AA- Genome Oryza Species.	G3 (Bethesda)			2017		
44032	28417193	Wang Y., Liu H., Zhu D., Gao Y., Yan H., Xiang Y.	Genome-wide analysis of VQ motif-containing proteins in Moso bamboo (Phyllostachys edulis).	Planta			2017		
44033	28393269	Parveda M., Kiran B., Punita D.L., Kavi Kishor PB.	Overexpression of SbAP37 in rice alleviates concurrent imposition of combination stresses and modulates different sets of leaf protein profiles.	Plant Cell Rep.	36(5)	773-786	2017		
44034	28401463	Priyanka, Agrawal T., Kotasthane A.S., Kosharia A., Kushwah R., Zaidi N.W., Singh U.S.	Crop specific plant growth promoting effects of ACCd enzyme and siderophore producing and cynogenic fluorescent Pseudomonas.	3 Biotech	7(1)	27	2017		
44035	28340002	Mishra N., Sun L., Zhu X., Smith J., Prakash Srivastava A., Yang X., Pehlivan N., Esmaeili N., Luo H., Shen G., Jones D., Auld D., Burke J., Payton P., Zhang H.	Overexpression of the Rice SUMO E3 ligase Gene OsSIZ1 in Cotton Enhances Drought and Heat Tolerance, and Substantially Improves Fiber Yields in the Field under Reduced Irrigation and Rainfed Conditions.	Plant Cell Physiol.	58(4)	735-746	2017		
44036	28417425	Ju Y., Tian H., Zhang R., Zuo L., Jin G., Xu Q., Ding X., Li X., Chu Z.	Overexpression of OsHSP18.0-CI Enhances Resistance to Bacterial Leaf Streak in Rice.	Rice (N Y)	10(1)	12	2017		
44037	28454637	Ge J., Cui K., Yan H., Li Y., Chai Y., Liu X., Cheng J., Yu X.	Uptake and translocation of imidacloprid, thiamethoxam and difenoconazole in rice plants.	Environ. Pollut.			2017		
44038	28425127	Gupta B.K., Sahoo K.K., Ghosh A., Tripathi A.K., Anwar K., Das P., Singh A.K., Pareek A., Sopory S.K., Singla-Pareek SL.	Manipulation of glyoxalase pathway confers tolerance to multiple stresses in rice.	Plant Cell Environ.			2017		
44039	28398878	Amaral Carneiro G., Matic S., Ortu G., Garibaldi A., Spadaro D., Gullino M.L.	Development and validation of a TaqMan real time PCR assay for the specific detection and quantification of Fusarium fujikuroi in rice plants and seeds.	Phytopathology			2017		
44040	28445706	Alagappan L.P., Shanmugasundaram P., Ramachandra B.L., Gumpu M.B., Nesakumar N., Jayanth Babu K., Vedantham S., Balaguru Rayappan JB.	Fabrication of electrochemical biosensor with vanadium pentoxide nano-interface for the detection of methylglyoxal in rice.	Anal. Biochem.	528	19-25	2017		
44041	28407080	Mangrauthia S.K., Bhogireddy S., Agarwal S., Prasanth V.V., Voleti S.R., Neelamraju S., Subrahmanyam D.	Genome-wide changes in microRNA expression during short and prolonged heat stress and recovery in contrasting rice cultivars.	J. Exp. Bot.			2017		
44042	28420345	Yuan Y., Zhang Q., Zeng S., Gu L., Si W., Zhang X., Tian D., Yang S., Wang L.	Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars.	BMC Genomics	18(1)	307	2017		
44043	28451819	Yue E., Liu Z., Li C., Li Y., Liu Q., Xu J.H.	Overexpression of miR529a confers enhanced resistance to oxidative stress in rice (Oryza sativa L.).	Plant Cell Rep.			2017		
44044	28494393	Ashraf U., Hussain S., Anjum S.A., Abbas F., Tanveer M., Noor M.A., Tang X.	Alterations in growth, oxidative damage, and metal uptake of five aromatic rice cultivars under lead toxicity.	Plant Physiol. Biochem.	115	461-471	2017		
44045	28455510	Yousaf M., Li J., Lu J., Ren T., Cong R., Fahad S., Li X.	Effects of fertilization on crop production and nutrient-supplying capacity under rice-oilseed rape rotation system.	Sci Rep	7(1)	1270	2017		
44046	28424214	Zhang B., Xu W., Liu X., Mao X., Li A., Wang J., Chang X., Zhang X., Jing R.	Functional conservation and divergence among homoeologs of TaSPL20 and TaSPL21, two SBP-box genes governing yield-related traits in hexaploid wheat.	Plant Physiol.			2017		
44047	28168930	Selisana S.M., Yanoria M.J., Quime B., Chaipanya C., Lu G., Opulencia R., Wang G.L., Mitchell T., Correll J., Talbot N.J., Leung H., Zhou B.	Avirulence (AVR) Gene-Based Diagnosis Complements Existing Pathogen Surveillance Tools for Effective Deployment of Resistance (R) Genes Against Rice blast disease.	Phytopathology	107(6)	711-720	2017		
44048	28438013	Lee H.H., Kang N., Park I., Park J., Kim I., Kim J., Kim N., Lee J.Y., Seo Y.S.	Characterization of Newly Bred Cordyceps militaris Strains for Higher Production of Cordycepin through HPLC and URP-PCR Analysis.	J. Microbiol. Biotechnol.			2017		
44049	28106309	Wang D., Qu Z., Yang L., Zhang Q., Liu Z.H., Do T., Adelson D.L., Wang Z.Y., Searle I., Zhu J.K.	Transposable elements (TEs) contribute to stress-related long intergenic noncoding RNAs in plants.	Plant J.	90(1)	133-146	2017		
44050	28378144	Shoba D., Raveendran M., Manonmani S., Utharasu S., Dhivyapriya D., Subhasini G., Ramchandar S., Valarmathi R., Grover N., Krishnan S.G., Singh A.K., Jayaswal P., Kale P., Ramkumar M.K., Mithra S.V.A., Mohapatra T., Singh K., Singh N.K., Sarla N., Sheshshayee M.S., Kar M.K., Robin S., Sharma R.P.	Development and Genetic Characterization of A Novel Herbicide (Imazethapyr) Tolerant Mutant in Rice (Oryza sativa L.).	Rice (N Y)	10(1)	10	2017		
44051	28397857	Razzaque S., Haque T., Elias S.M., Rahman M.S., Biswas S., Schwartz S., Ismail A.M., Walia H., Juenger T.E., Seraj Z.I.	Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice.	Sci Rep	7	46138	2017		
44052	28400567	Zhang Y., Zhou L., Shen X., Chen D., Wu W., Zhan X., Liu Q., Zhu A., Lou X., Xu H., Cheng S., Cao L.	Genetic dissection of yield traits in super hybrid rice Xieyou9308 using both unconditional and conditional genome-wide association mapping.	Sci Rep	7(1)	824	2017		
44053	28430356	Demirci Y., Zhang B., Unver T.	CRISPR/Cas9: an RNA-guided highly precise synthetic tool for plant genome editing.	J. Cell. Physiol.			2017		
44054	28103409	Zhang X.Y., Zhang X., Zhang Q., Pan X.X., Yan L.C., Ma X.J., Zhao W.Z., Qi X.T., Yin L.P.	Zea mays Fe deficiency-related 4 (ZmFDR4) functions as an iron transporter in the plastids of monocots.	Plant J.	90(1)	147-163	2017		
44055	28461082	Sun L., Yang J., Fang H., Xu C., Peng C., Huang H., Lu L., Duan D., Zhang X., Shi J.	Mechanism study of sulfur fertilization mediating copper translocation and biotransformation in rice (Oryza sativa L.) plants.	Environ. Pollut.			2017		
44056	28422161	Weng F., Zhang W., Wu X., Xu X., Ding Y., Li G., Liu Z., Wang S.	Impact of low-temperature, overcast and rainy weather during the reproductive growth stage on lodging resistance of rice.	Sci Rep	7	46596	2017		
44057	28446328	Bucher R., Veyel D., Willmitzer L., Krattinger S., Keller B., Biglera L.	Combined GC- and UHPLC-HR-MS Based Metabolomics to Analyze Durable Anti-fungal Resistance Processes in Cereals.	Chimia (Aarau)	71(4)	156-159	2017		
44058	28409435	Nisarga K.N., Vemanna R.S., Kodekallu Chandrashekar B., Rao H., Vennapusa A.R., Narasimaha A., Makarla U., Basavaiah M.R.	aldo-ketoreductase 1 (AKR1) improves seed longevity in tobacco and rice by detoxifying reactive cytotoxic compounds generated during ageing.	Rice (N Y)	10(1)	11	2017		
44059	28339724	Chen X., Liao D., Yang X., Ji M., Wang S., Gu M., Chen A., Xu G.	Three cis-Regulatory Motifs, AuxRE, MYCRS1 and MYCRS2, are Required for Modulating the Auxin- and Mycorrhiza-Responsive Expression of a Tomato GH3 Gene.	Plant Cell Physiol.	58(4)	770-778	2017		
44060	28378532	Selvaraj M.G., Ishizaki T., Valencia M., Ogawa S., Dedicova B., Ogata T., Yoshiwara K., Maruyama K., Kusano M., Saito K., Takahashi F., Shinozaki K., Nakashima K., Ishitani M.	Overexpression of an Arabidopsis thaliana galactinol synthase gene improves drought tolerance in transgenic rice and increased grain yield in the field.	Plant Biotechnol. J.			2017		
44061	28378445	Liu Z., Lin S., Shi J., Yu J., Zhu L., Yang X., Zhang D., Liang W.	Rice No pollen 1 (NP1) is required for anther cuticle formation and pollen exine patterning.	Plant J.			2017	NP1 ,CYP704B2,ABCG26,CYP703A3,ABCG15,_	OS-ACE, OsNP1 ,OsCYP704B2,OsABCG26,OsCYP703A3,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsMS2, MS2, OsDPW, DPW, DPW1
44062	28339688	Yamakawa H., Hirai-Kimura R., Nakata Y., Nakata M., Kuroda M., Yamaguchi T.	An Activity-Staining Method on Filtration Paper Enables High-Throughput Screening of Temperature-Sensitive and Inactive Mutations of Rice alpha-amylase for Improvement of Rice Grain Quality.	Plant Cell Physiol.	58(4)	658-667	2017		
44063	28416245	Hua Y., Wang C., Huang J., Wang K.	A simple and efficient method for CRISPR/Cas9-induced mutant screening.	J Genet Genomics	44(4)	207-213	2017		
44064	28365842	Li Y., Huang J., Song X., Zhang Z., Jiang Y., Zhu Y., Zhao H., Ni D.	An RNA-Seq transcriptome analysis revealing novel insights into aluminum tolerance and accumulation in tea plant.	Planta			2017		
44065	28405745	Zhang Y.Y., Hao Y.Y., Wang Y.H., Wang C.M., Wang Y.L., Long W.H., Wang D., Liu X., Jiang L., Wan J.M.	Lethal albinic seedling, encoding a threonyl-tRNA synthetase, is involved in development of plastid protein synthesis system in rice.	Plant Cell Rep.			2017	LAS	OsLAS
44066	28455404	Leng Y., Yang Y., Ren D., Huang L., Dai L., Wang Y., Chen L., Tu Z., Gao Y., Li X., Zhu L., Hu J., Zhang G., Gao Z., Guo L., Kong Z., Lin Y., Qian Q., Zeng D.	A rice pectate lyase-LIKE gene is required for plant growth and leaf senescence.	Plant Physiol.			2017	CDC2-1,_,DEL1,SODA1,PME6,CATB,WRKY72,CDKF;1,WRKY23,MCM5,AOX1B,APX2,CATA,NAC6,_,ATP6,APX1,_,SGR,AOX1A,CYCT1;1,SODB,EXPB2,_	cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,OsPLL12, PLL12,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,OsPME6, OsPME1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsWRKY72, WRKY-72,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,OsWRKY23,OsMCM5,AOX1b, OsAOX1b,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsPorA, PORA, OsPORA,atp6, OsPOX1, prx3, POX1,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,Osh36, OsH36, H36, OsAMTR1, AMTR1,sgr(t), sgr, OsSGR, OsSgr,Ao1-1, AOX1a, OsAOX1a, AOX 1a,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2,OsEXPB2, OsaEXPb1.9, EXPb1.9,Osl2
44067	28378373	Choi G.H., Lee H.Y., Back K.	Chloroplast overexpression of rice caffeic acid O-methyltransferase increases melatonin production in chloroplasts via the 5-methoxytryptamine pathway in transgenic rice plants.	J. Pineal Res.			2017		
44068	28418377	Marroquin-Guzman M., Hartline D., Wright J.D., Elowsky C., Bourret T.J., Wilson R.A.	The Magnaporthe oryzae nitrooxidative stress response suppresses rice innate immunity during blast disease.	Nat Microbiol	2	17054	2017		
44069	28394310	Liu J., Chen J., Zheng X., Wu F., Lin Q., Heng Y., Tian P., Cheng Z., Yu X., Zhou K., Zhang X., Guo X., Wang J., Wang H., Wan J.	GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice.	Nat Plants	3	17043	2017		
44070	28404726	Ito S., Yamagami D., Umehara M., Hanada A., Yoshida S., Sasaki Y., Yajima S., Kyozuka J., Ueguchi-Tanaka M., Matsuoka M., Shirasu K., Yamaguchi S., Asami T.	Regulation of strigolactone biosynthesis by gibberellin signaling.	Plant Physiol.			2017		
44071	28394334	Bakshi A., Moin M., Kumar M.U., Reddy A.B., Ren M., Datla R., Siddiq E.A., Kirti P.B.	Corrigendum: Ectopic expression of Arabidopsis Target of Rapamycin (AtTOR) improves water-use efficiency and yield potential in rice.	Sci Rep	7	46124	2017		
44072	28351990	Yamauchi T., Yoshioka M., Fukazawa A., Mori H., Nishizawa N.K., Tsutsumi N., Yoshioka H., Nakazono M.	An NADPH oxidase RBOH Functions in Rice Roots during Lysigenous Aerenchyma Formation under Oxygen-Deficient Conditions.	Plant Cell	29(4)	775-790	2017	CDPK5,CDPK13,RBOHH	OsCDPK5, OsCPK5,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2,rbohH, OsrbohH, Os rbohH, OsNox9, OsRboh9, Os-RbohH, RbohH 
44073	28298520	Wang J., Yu H., Xiong G., Lu Z., Jiao Y., Meng X., Liu G., Chen X., Wang Y., Li J.	Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.	Plant Cell	29(4)	697-707	2017	DEP1,WFP,FC1,_	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,VIP2, IPI1
44074	28298519	Xu L., Zhao H., Ruan W., Deng M., Wang F., Peng J., Luo J., Chen Z., Yi K.	ABNORMAL INFLORESCENCE MERISTEM1 Functions in Salicylic Acid Biosynthesis to Maintain Proper Reactive Oxygen Species Levels for root meristem Activity in Rice.	Plant Cell	29(3)	560-574	2017	WRKY62,AIM1,WRKY76	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,MFP, OsAIM, OsCHD, CHD,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3
44075	28363779	Ma J.Q., Jian H.J., Yang B., Lu K., Zhang A.X., Liu P., Li J.N.	Genome-wide analysis and expression profiling of the GRF gene family in oilseed rape (Brassica napus L.).	Gene			2017		
44076	28254898	Wang G.L., Valent B.	Durable resistance to rice blast.	Science	355(6328)	906-907	2017	_,_,PIGM	PigmR,PigmS,Pigm(t), Pi-gm(t), Pigm
44077	28254780	Song S., Chen Y., Liu L., Wang Y., Bao S., Zhou X., Teo Z.W., Mao C., Gan Y., Yu H.	OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDKgamma4.	Plant Cell	29(3)	491-507	2017	_,_,RFT1,_,RAP1A,RAP1B	OsS5a, S5a, OsRpn10, Rpn10,OsUbDKgamma4, UbDKgamma4,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsFTIP1, FTIP1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10
44078	28366833	Kumari C., Dutta T.K., Chaudhary S., Banakar P., Papolu P.K., Rao U.	Molecular characterization of FMRFamide-like peptides in Meloidogyne graminicola and analysis of their knockdown effect on nematode infectivity.	Gene			2017		
44079	28349358	Yin X., Biswal A.K., Dionora J., Perdigon K.M., Balahadia C.P., Mazumdar S., Chater C., Lin H.C., Coe R.A., Kretzschmar T., Gray J.E., Quick P.W., Bandyopadhyay A.	CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice.	Plant Cell Rep.	36(5)	745-757	2017	_	STOMAGEN, OsEPFL9, EPFL9 
44080	28248438	Sun J., Zheng T., Yu J., Wu T., Wang X., Chen G., Tian Y., Zhang H., Wang Y., Terzaghi W., Wang C., Wan J.	TSV, a putative plastidic oxidoreductase, protects rice chloroplasts from cold stress during development by interacting with plastidic thioredoxin Z.	New Phytol.			2017	PSAA,RPOA,RBCL,_,RPOB,TRXZ,TCD5	PsaA, psaA, PsAA1,rope, rpoalpha, Rpoalpha, rope, RpoA ,rbcL, rbcA, OsrbcL,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,rpoB, RpoB, Rpobeta,OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz,OsTCD5, TSV, OsTSV, CSV1, OsCSV1
44081	28285416	Zeng X., Tang R., Guo H., Ke S., Teng B., Hung Y.H., Xu Z., Xie X.M., Hsieh T.F., Zhang X.Q.	A naturally occurring conditional albino mutant in rice caused by defects in the plastid-localized OsABCI8 transporter.	Plant Mol. Biol.			2017	ABCI7,ABCI8,ABCI6	OsABCI7, OsABCI7_1, OsABCI7_2, OsABCI8, ABCI8, OsABCI8.1, OsABCI8.2,OsABCI8, OsABCI9, ABCI9,OsABCI6, OsABCI7, ABCI7
44082	28357539	Hirano K., Masuda R., Takase W., Morinaka Y., Kawamura M., Takeuchi Y., Takagi H., Yaegashi H., Natsume S., Terauchi R., Kotake T., Matsushita Y., Sazuka T.	Screening of rice mutants with improved saccharification efficiency results in the identification of CONSTITUTIVE PHOTOMORPHOGENIC 1 and GOLD HULL AND INTERNODE 1.	Planta			2017	PPS,_	OsWD40-55, OsCOP1, COP1,gh1, GH1, OsCHI, Cfi, CHI
44083	28142196	Chen T., Wu H., Wu J., Fan X., Li X., Lin Y.	Absence of OsbetaCA1 causes a CO2 deficit and affects leaf photosynthesis and the stomatal response to CO2 in rice.	Plant J.	90(2)	344-357	2017	ALPHACA10,ALPHACA4,ALPHACA1,BETACA1,ALPHACA7,BETACA2,ALPHACA8,ALPHACA3,ALPHACA11,ALPHACA2,ALPHACA9,ALPHACA6,ALPHACA5	OsalphaCA10, alphaCA10,OsalphaCA4, alphaCA4,OsalphaCA1, alphaCA1,OsCA, CA, OsbetaCA1, betaCA1,OsalphaCA7, alphaCA7,OsbetaCA2, betaCA2,OsalphaCA8, alphaCA8,OsalphaCA3, alphaCA3,OsalphaCA11, alphaCA11,OsalphaCA2, alphaCA2,OsalphaCA9, alphaCA9,OsalphaCA6, alphaCA6,OsalphaCA5, alphaCA5
44084	28402719	Song X., Guo H., Zhang G., Wu Y., Wang G., Chen X., Fang R.	OsPRA2 fine-tunes rice brassinosteroid receptor.	Plant Signal Behav	12(3)	e1257455	2017	D61,_,BZR1,_	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsBZR1, Os BZR1,OsRab11F1, OsPRA2, PRA2, OsPra2 
44085	28321650	Xu Y.X., Xiao M.Z., Liu Y., Fu J.L., He Y., Jiang D.A.	The small auxin-up RNA OsSAUR45 affects auxin synthesis and transport in rice.	Plant Mol. Biol.			2017	YUCCA1,PIN1B,YUCCA2,PIN5B,YUCCA3,PIN1C,YUCCA4,PIN8,PIN1A,YUCCA7,SAUR45,YUCCA6,PIN5C,PIN9,PIN10A,PIN10B,LRA1	OsYUCCA1, OsYUC1,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsYUCCA2, OsYUC2,PIN5C, OsPIN5c, OsPIN5b,OsYUCCA3, OsYUC3,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsYUCCA4, OsYUC4, YUC4,OsPIN8,PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsYUCCA7, OsYUC7,OsSAUR45,OsYUCCA6, OsYUC6,PIN5B, OsPIN5b, OsPIN5c,OsPIN9,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,PIN3B, OsPIN3b, OsPIN10b,OsPIN2, PIN2, OsLRA1
44086	28369589	Zhou L., Han J., Chen Y., Wang Y., Liu Y.G.	Bivalent Formation 1, a plant-conserved gene, encodes an OmpH/coiled-coil motif-containing protein required for meiotic recombination in rice.	J. Exp. Bot.			2017	DMC1A,RMC1,COM1,_,_,ZEP1	OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3,OsCOM1,MRE11, OsMRE11,P31comet, OsBVF1, BVF1 ,OsZEP1
44087	28347822	Ogawa S., Kawahara-Miki R., Miyamoto K., Yamane H., Nojiri H., Tsujii Y., Okada K.	OsMYC2 mediates numerous defence-related transcriptional changes via jasmonic acid signalling in rice.	Biochem. Biophys. Res. Commun.	486(3)	796-803	2017	_,TIFY11B,_,TIFY11E,_,TIFY10C,_,AOS3,OG1,AOS1,_,_,_,_,TIFY11A,TIFY5,_,JAR1,LOX-L2,_,_,PLDalpha4,AOC,_,_,_,_,_,NOMT,_,_,_	OsMCS, MCS, IspF, OsIspF,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsHDS, HDS, OsIspG, IspG,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e,OsbHLH009, bHLH009, OsMYC2, MYC2,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsTPS5, TPS5,OsAOS3, HPL2, OsHPL2, OsAOS3/OsHPL2,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,TPS3, OsSTP3, OsTPS28, TPS28, OsTPS13,OsCMK, CMK, OsIspE, IspE,OsTPS3, TPS3, OsLIS, LIS,OsTPS20, TPS20,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116 ,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsLOX-L2, LOX1.1, LOX L-2, LOX-2,OsACS6, ACS6,OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10,OsPLDalpha4, RPLD3, OsPLDeta2,OsAOC, AOC1, OsAOC1, HB, CPM2,OsACS4, ACS4,OsACS5, ACS5,CHS, OsPKS02, OsPKS2, PKS02, PKS2,OsACS7, ACS7,CHI2, OsCHI2,OsNOMT, COMTL3, OsCOMTL3,OsTPS23, TPS23,CHS, OsPKS12, PKS12,OsDXR, DXR, OsIspC, IspC
44088	28250070	Zuo J., Wu Z., Li Y., Shen Z., Feng X., Zhang M., Ye H.	Mitochondrial ABC Transporter ATM3 Is Essential for Cytosolic Iron-Sulfur Cluster Assembly.	Plant Physiol.	173(4)	2096-2109	2017	ABCB23	OsABCB23, OsISC32, OsATM3, ATM3
44089	28263767	Henry S., Dievart A., Divol F., Pauluzzi G., Meynard D., Swarup R., Wu S., Gallagher K.L., Perin C.	SHR overexpression induces the formation of supernumerary cell layers with cortex cell identity in rice.	Dev. Biol.	425(1)	1-7	2017	SHR2	OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15
44090	28059476	Wei X., Song X., Wei L., Tang S., Sun J., Hu P., Cao X.	An epiallele of rice AK1 affects photosynthetic capacity.	J Integr Plant Biol	59(3)	158-163	2017	_,_,AK1	OsPorA, PORA, OsPORA,DSM2, OsDSM2, OsBCH1, OsHYD3,OsAK1
44091	28283922	Das N., Bhattacharya S., Bhattacharyya S., Maiti M.K.	Identification of alternatively spliced transcripts of rice phytochelatin synthase 2 gene OsPCS2 involved in mitigation of cadmium and arsenic stresses.	Plant Mol. Biol.			2017	_,PCS1	OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full,OsPCS1, OsPCS2, PCS2 
44092	28342018	Lu G., Casaretto J.A., Ying S., Mahmood K., Liu F., Bi Y.M., Rothstein S.J.	Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.	Plant Mol. Biol.			2017	SUT2,_,_,SGR,CATB,GATA12,SUT1,SPS11,RCCR1,YGL10,NAC58,NYC3,_,SPS1,_,SWEET3A	OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsPAO, PAO,OsPorA, PORA, OsPORA,sgr(t), sgr, OsSGR, OsSgr,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsGATA12,OsSUT1, OsSUT2,sps11, OsSPS11, OsSPS5, SPS5,OsRCCR1, OsRCCR, RCCR,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,nyc3, OsNYC3, PPH,OsAP10, AP10,sps1, OsSPS1, SPS,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,OsSWEET3a, SWEET3a
44093	28118490	Lee K., Back K.	Overexpression of rice serotonin N-acetyltransferase 1 in transgenic rice plants confers resistance to cadmium and senescence and increases grain yield.	J. Pineal Res.	62(3)		2017	SNAT1	OsSNAT1, OsSNAT, SNAT
44094	28270131	Zhan Y., Sun X., Rong G., Hou C., Huang Y., Jiang D., Weng X.	Identification of two transcription factors activating the expression of OsXIP in rice defence response.	BMC Biotechnol.	17(1)	26	2017	ERF71,_,_	OsERF#071, OsERF071, OsERF71, AP2/EREBP#124, AP2/EREBP124, OsERF15,OsbHLH059, bHLH059, OsbHLH59, bHLH59 ,OsXIP, XIP
44095	28369864	Carotenuto G., Chabaud M., Miyata K., Capozzi M., Takeda N., Kaku H., Shibuya N., Nakagawa T., Barker D.G., Genre A.	The rice LysM receptor-like kinase OsCERK1 is required for the perception of short-chain chitin oligomers in arbuscular mycorrhizal signaling.	New Phytol.	214(4)	1440-1446	2017	_,CEBiP,_	OsLysM-RLK1, OsLYK4, OsNFR5/OsRLK2, OsNFR5, NFR5, OsRLK2, RLK2,CEBIP, Os-LYP1, LYP1, OsCEBiP,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9
44096	28337744	Joshi R., Sahoo K.K., Tripathi A.K., Kumar R., Gupta B.K., Pareek A., Singla-Pareek SL.	TKnockdown of an inflorescence meristem-specific cytokinin oxidase - OsCKX2 in rice reduces yield penalty under salinity stress condition.	Plant Cell Environ.			2017	GN1A	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a
44097	28342864	Li C., Zhu S., Zhang H., Chen L., Cai M., Wang J., Chai J., Wu F., Cheng Z., Guo X., Zhang X., Wan J.	OsLBD37 and OsLBD38, two class II type LBD proteins, are involved in the regulation of heading date by controlling the expression of Ehd1 in rice.	Biochem. Biophys. Res. Commun.	486(3)	720-725	2017	RFT1,HD3A,_,_,EF1	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsLBD38, LBD38,OsLBD37, LBD37,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
44098	28267270	Cui P., Liu H., Ruan S., Ali B., Gill R.A., Ma H., Zheng Z., Zhou W.	A zinc finger protein, interacted with cyclophilin, affects root development via IAA pathway in rice.	J Integr Plant Biol			2017	IAA8,IAA31,IAA1,IAA20,LRT2,IAA23,_,IAA11	OsIAA8,OsIAA3, OsIAA31,OsIAA1, OsIAA4,OsIAA20,CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsIAA23,OsZFP, ZFP,OsIAA11
44099	28301324	Li R., Wang W., Li F., Wang Q., Wang S., Xu Y., Chen F.	Response of alternative splice isoforms of OsRad9 gene from Oryza sativa to environmental stress.	Z. Naturforsch., C, J. Biosci.			2017		
44100	28369540	Wang Y., Li D., Gao J., Li X., Zhang R., Jin X., Hu Z., Zheng B., Persson S., Chen P.	The 2'-O-methyladenosine nucleoside modification gene OsTrm13 positively regulates salt stress tolerance in rice.	J. Exp. Bot.			2017	ABA1,_,SOS1,ABI5,NHX1,_,_	OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsTRM13, OsTrm13, TRM13, Trm13 ,OsSOS1, OsNHA1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsNHX1,OsAAO3, AAO3 ,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 
44101	28371870	Yamada K., Yamaguchi K., Yoshimura S., Terauchi A., Kawasaki T.	Conservation of chitin-induced MAPK signaling pathways in rice and Arabidopsis.	Plant Cell Physiol.			2017	MAPK6,_,MSRMK2,JIOSPR10,PR10A,MAPKKK18,RLCK185,MAPKKK11,SMG1	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,JIOsPR10, OsPR10, PR10 ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsMAPKKK18,OsRLCK185,OsMAPKKK11,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1
44102	28272449	Han X., Jiang L., Che C., Wan C., Lu H., Xiao Y., Xu Y., Chen Z., Qin Z.	Design and Functional Characterization of a Novel Abscisic Acid Analog.	Sci Rep	7	43863	2017		
44103	28369656	God?nez-Palma SK., Rosas-Bringas FR., Rosas-Bringas OG., Garc?a-Ram?rez E., Zamora-Zaragoza J., V?zquez-Ramos JM.	Two maize Kip-related proteins differentially interact with, inhibit and are phosphorylated by cyclin D-cyclin-dependent kinase complexes.	J. Exp. Bot.			2017		
44104	28370092	Li F.Q., Li W., Lin Y.J., Pickett J.A., Birkett M.A., Wu K., Wang G., Zhou J.J.	Expression of Lima Bean Terpene Synthases in Rice Enhances Recruitment of a Beneficial Enemy of a Major Rice Pest.	Plant Cell Environ.			2017		
44105	28292258	Montesinos L., Bund? M., Badosa E., San Segundo B., Coca M., Montesinos E.	Production of BP178, a derivative of the synthetic antibacterial peptide BP100, in the rice seed endosperm.	BMC Plant Biol.	17(1)	63	2017		
44106	28370563	Wang J., Wang R., Wang Y., Zhang L., Zhang L., Xu Y., Yao S.	SHORT and Solid Culm/RFL/APO2 for culm development in rice.	Plant J.			2017	OSH15,GA2OX3,SD1,_,D35,_,OSH10,GO,MADS2,OSH45,OSH3,EUI1,KO1,_,OSH43,D18,RFL	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsCCT34, OsCMF10, CO9,d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A,OsBBX12, OsC, OsCCT16, BBX12, CCT16,OsH10, H10, HB412,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OSH42, OSH44, H45,OsH3, H3, HOS13,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsKO1, OSKO1, OSKOL1, OsKOS4, CYP701A7,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, BBX8, CCT09, Ghd2,OsH43, H43,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 
44107	28363873	Jung J.W., Huy N.X., Kim H.B., Kim N.S., Van Giap D., Yang M.S.	Production of recombinant human acid alpha-glucosidase with high-mannose glycans in gnt1 rice for the treatment of Pompe disease.	J. Biotechnol.	249	42-50	2017		
44108	28278368	Liu C., Du B., Hao F., Lei H., Wan Q., He G., Wang Y., Tang H.	Dynamic metabolic responses of brown planthoppers towards susceptible and resistant rice plants.	Plant Biotechnol. J.			2017		
44109	28273925	Hirano K., Kawamura M., Araki-Nakamura S., Fujimoto H., Ohmae-Shinohara K., Yamaguchi M., Fujii A., Sasaki H., Kasuga S., Sazuka T.	Sorghum dw1 positively regulates brassinosteroid signaling by inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2.	Sci Rep	7(1)	126	2017	_,_,_	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsDW1-01g ,OsDW1-03g 
44110	28412605	Ito A., Yasuda A., Yamaoka K., Ueda M., Nakayama A., Takatsuto S., Honda I.	Brachytic 1 of barley (Hordeum vulgare L.) encodes the alpha subunit of heterotrimeric G protein.	J. Plant Physiol.	213	209-215	2017		
44111	28087663	Van Holle S., Roug? P., Van Damme EJM.	Evolution and structural diversification of Nictaba-like lectin genes in food crops with a focus on soybean (Glycine max).	Ann. Bot.	119(5)	901-914	2017		
44112	28369596	Bashir K., Nozoye T., Nagasaka S., Rasheed S., Miyauchi N., Seki M., Nakanishi H., Nishizawa N.K.	Paralogs and mutants show that one DMA synthase functions in Fe homeostasis in rice.	J. Exp. Bot.			2017		
44113	28349304	Shen L., Hua Y., Fu Y., Li J., Liu Q., Jiao X., Xin G., Wang J., Wang X., Yan C., Wang K.	Rapid generation of genetic diversity by multiplex CRISPR/Cas9 genome editing in rice.	Sci China Life Sci			2017		
44114	28370170	Kikuchi S., Bheemanahalli R., Jagadish K.S., Kumagai E., Masuya Y., Kuroda E., Raghavan C., Dingkuhn M., Abe A., Shimono H.	Genome-Wide Association Mapping for Phenotypic Plasticity in Rice.	Plant Cell Environ.			2017		
44115	28299373	Qiu X., Chen K., Lv W., Ou X., Zhu Y., Xing D., Yang L., Fan F., Yang J., Xu J., Zheng T., Li Z.	Examining two sets of introgression lines reveals background-independent and stably expressed QTL that improve grain appearance quality in rice (Oryza sativa L.).	Theor. Appl. Genet.	130(5)	951-967	2017		
44116	28288591	Rytter M.J., Namusoke H., Ritz C., Michaelsen K.F., Briend A., Friis H., Jeppesen D.	Correlates of thymus size and changes during treatment of children with severe acute malnutrition: a cohort study.	BMC Pediatr	17(1)	70	2017		
44117	28275855	Sunitha M., Srinath T., Reddy V.D., Rao K.V.	Expression of cold and drought regulatory protein (CcCDR) of pigeonpea imparts enhanced tolerance to major abiotic stresses in transgenic rice plants.	Planta			2017		
44118	28264650	H?nniger S., Dumas P., Sch?fl G., Gebauer-Jung S., Vogel H., Unbehend M., Heckel D.G., Groot A.T.	Genetic basis of allochronic differentiation in the fall armyworm.	BMC Evol. Biol.	17(1)	68	2017		
44119	28293806	Bandyopadhyay T., Mehra P., Hairat S., Giri J.	Morpho-physiological and transcriptome profiling reveal novel zinc deficiency-responsive genes in rice.	Funct. Integr. Genomics			2017		
44120	28346401	Shimatani Z., Kashojiya S., Takayama M., Terada R., Arazoe T., Ishii H., Teramura H., Yamamoto T., Komatsu H., Miura K., Ezura H., Nishida K., Ariizumi T., Kondo A.	Targeted base editing in rice and tomato using a CRISPR-Cas9 cytidine deaminase fusion.	Nat. Biotechnol.	35(5)	441-443	2017		
44121	28167027	Rao G.S., Tyagi A.K., Rao K.V.	Development of an inducible male-sterility system in rice through pollen-specific expression of l-ornithinase (argE) gene of E. coli.	Plant Sci.	256	139-147	2017		
44122	28285407	Davidi L., Pick U.	Novel 9-cis/all-trans beta-carotene isomerases from plastidic oil bodies in Dunaliella bardawil catalyze the conversion of all-trans to 9-cis beta-carotene.	Plant Cell Rep.			2017		
44123	28335375	Zhou K., Deng X., Yao X., Tian Y., Cao W., Zhu Y., Ustin S.L., Cheng T.	Assessing the Spectral Properties of Sunlit and Shaded Components in Rice Canopies with Near-Ground Imaging Spectroscopy Data.	Sensors (Basel)	17(3)		2017		
44124	28334204	Petitot A.S., Kyndt T., Haidar R., Dereeper A., Collin M., de Almeida Engler J., Gheysen G., Fernandez D.	Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots.	Ann. Bot.	119(5)	885-899	2017		
44125	28270549	VanHook AM.	Papers of note in Science355 (6328).	Sci Signal	10(469)		2017		
44126	28369958	Yamaki T., Otani M., Ono K., Mimura T., Oda K., Minamii T., Matsumoto S., Matsuo Y., Kawamukai M., Akihiro T.	Isolation and characterization of rice cesium transporter genes from a rice-transporter-enriched yeast expression library.	Physiol Plant			2017	_,HAK17,FCO11,AMT1;1,_,PDR1,_,_,_,NRAMP4,_,HAK5	OsANT4, ANT4, FCO8,OsHAK17, FCO3, FCO4,OsFCO11, OsVPE1, VPE1,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,FCO10,OsABCG45, OsPDR1, FCO1,FCO9,FCO2,OsAAP11F, AAP11F, OsAAP7, AAP7, FCO7,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,FCO6,OsHAK5, FCO13, OsFCO13
44127	28303353	Ju S., Wang L., Yin N., Li D., Wang Y., Zhang C.	Silicon alleviates simulated acid rain stress of Oryza sativa L. seedlings by adjusting physiology activity and mineral nutrients.	Protoplasma			2017		
44128	28151037	Zhang K., Xu W., Wang C., Yi X., Su Z.	Differential deposition of H2A.Z in rice seedling tissue during the day-night cycle.	Plant Signal Behav	12(3)	e1286438	2017	_,ELF3.2,PRR73,TOC1	HTA705,ELF3_chr.1, OsELF3.2, ELF3.2,OsPRR73, Os-PRR73, Prr3, OsPRR3, OsRRA20, OsCCT11,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07
44129	28108552	Xu S.	Predicted Residual Error Sum of Squares of Mixed Models: An Application for Genomic Prediction.	G3 (Bethesda)	7(3)	895-909	2017		
44130	28391850	Preety, Hooda V.	Increasing the efficiency of immobilization and chitin determination using copper oxide nanoparticles.	Talanta	168	246-256	2017		
44131	28369468	Nanda A.K., Pujol V., Wissuwa M.	Patterns of stress response and tolerance based on transcriptome profiling of rice crown tissue under zinc deficiency.	J. Exp. Bot.			2017		
44132	28366824	Duan P., Xu J., Zeng D., Zhang B., Geng M., Zhang G., Huang K., Huang L., Xu R., Ge S., Qian Q., Li Y.	Natural Variation in the Promoter of GSE5 Contributes to grain size Diversity in Rice.	Mol Plant	10(5)	685-694	2017	GW5	qSW5/GW5, GSE5
44133	28167026	Kim T.H., Hur Y.J., Han S.I., Cho J.H., Kim K.M., Lee J.H., Song Y.C., Kwon Y.U., Shin D.	Drought-tolerant QTL qVDT11 leads to stable tiller formation under drought stress conditions in rice.	Plant Sci.	256	131-138	2017		
44134	28337762	Li S., Ying Y., Secco D., Wang C., Narsai R., Whelan J., Shou H.	Molecular interaction between PHO2 and GI in rice.	Plant Cell Environ.			2017		
44135	28274717	Qiu L., Fan J., Zhang B., Liu L., Wang X., Lei C., Lin Y., Ma W.	RNA interference knockdown of aminopeptidase N genes decrease the susceptibility of Chilo suppressalis larvae to Cry1Ab/Cry1Ac and Cry1Ca-expressing transgenic rice.	J. Invertebr. Pathol.	145	9-12	2017		
44136	28299429	Liu Y., Xu Y., Ling S., Liu S., Yao J.	Anther-preferential expressing gene PMR is essential for the mitosis of pollen development in rice.	Plant Cell Rep.			2017	PMR	OsPMR
44137	28317902	Zhang L., Yu H., Ma B., Liu G., Wang J., Wang J., Gao R., Li J., Liu J., Xu J., Zhang Y., Li Q., Huang X., Xu J., Li J., Qian Q., Han B., He Z., Li J.	A natural tandem array alleviates epigenetic repression of ipa1 and leads to superior yielding rice.	Nat Commun	8	14789	2017		
44138	28290557	Jang S., Li H.Y., Kuo M.L.	Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.	Sci Rep	7	44477	2017		
44139	28415033	Zhang C., Li X., He Y., Zhang J., Yan T., Liu X.	Physiological investigation of C4-phosphoenolpyruvate-carboxylase-introduced rice line shows that sucrose metabolism is involved in the improved drought tolerance.	Plant Physiol. Biochem.	115	328-342	2017		
44140	28332574	Zhang Z., Li J., Pan Y., Li J., Zhou L., Shi H., Zeng Y., Guo H., Yang S., Zheng W., Yu J., Sun X., Li G., Ding Y., Ma L., Shen S., Dai L., Zhang H., Yang S., Guo Y., Li Z.	Natural variation in CTB4a enhances rice adaptation to cold habitats.	Nat Commun	8	14788	2017	RLCK127,_,_	OsRLCK127, CTB4a, qCTB4-1,RMtATPb, atpB, AtpB ,AtpB 
44141	28295376	Yuan J., Chen S., Jiao W., Wang L., Wang L., Ye W., Lu J., Hong D., You S., Cheng Z., Yang D.L., Chen Z.J.	Both maternally and paternally imprinted genes regulate seed development in rice.	New Phytol.			2017	_,_,MEG2,_,_,_	Os_F0794, OsFBDUF48, FBDUF48, PEG3,PEG1,OsMEG2,MEG2,OsFbox530, Fbox530, Os_F0198, OsFBX365, FBX365, PEG2,OsEnS-86, EnS-86, MEG3
44142	28351912	Yoon J., Cho L.H., Antt H.W., Koh H.J., An G.	KNOX Protein OSH15 Induces Grain Shattering by Repressing Lignin Biosynthesis Genes.	Plant Physiol.	174(1)	312-325	2017		
44143	28260228	Ren B., Yan F., Kuang Y., Li N., Zhang D., Lin H., Zhou H.	A CRISPR/Cas9 toolkit for efficient targeted base editing to induce genetic variations in rice.	Sci China Life Sci			2017		
44144	28347275	Zhou P., Silverstein K.A., Ramaraj T., Guhlin J., Denny R., Liu J., Farmer A.D., Steele K.P., Stupar R.M., Miller J.R., Tiffin P., Mudge J., Young N.D.	Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes.	BMC Genomics	18(1)	261	2017		
44145	28319055	Zeng D., Tian Z., Rao Y., Dong G., Yang Y., Huang L., Leng Y., Xu J., Sun C., Zhang G., Hu J., Zhu L., Gao Z., Hu X., Guo L., Xiong G., Wang Y., Li J., Qian Q.	Rational design of high-yield and superior-quality rice.	Nat Plants	3	17031	2017		
44146	28257051	Yang Y., Gao T., Xu M., Dong J., Li H., Wang P., Li G., Guo T., Kang G., Wang Y.	Functional Analysis of a Wheat AGPase Plastidial Small Subunit with a Truncated Transit Peptide.	Molecules	22(3)		2017		
44147	28464063	Tulpan D., Leger S.	The Plant Orthology Browser: An Orthology and Gene-Order Visualizer for Plant Comparative Genomics.	Plant Genome	10(1)		2017		
44148	28256530	Shen J., Liu J., Xie K., Xing F., Xiong F., Xiao J., Li X., Xiong L.	Translational repression by a miniature inverted-repeat transposable element in the 3' untranslated region.	Nat Commun	8	14651	2017		
44149	28483054	Kashyap P., Deswal R.	A novel class I Chitinase from Hippophae rhamnoides: Indications for participating in ICE-CBF cold stress signaling pathway.	Plant Sci.	259	62-70	2017		
44150	28167036	Mei J., Li F., Liu X., Hu G., Fu Y., Liu W.	Newly identified CSP41b gene localized in chloroplasts affects leaf color in rice.	Plant Sci.	256	39-45	2017	YGL6 	CSP41b, LGL1
44151	28331197	Miki D., Zhu P., Zhang W., Mao Y., Feng Z., Huang H., Zhang H., Li Y., Liu R., Zhang H., Qi Y., Zhu J.K.	Efficient Generation of diRNAs Requires Components in the Posttranscriptional Gene Silencing Pathway.	Sci Rep	7(1)	301	2017		
44152	28315752	Wang M., Mao Y., Lu Y., Tao X., Zhu J.K.	Multiplex Gene Editing in Rice Using the CRISPR-Cpf1 System.	Mol Plant			2017		
44153	28264034	Wang H., Niu L., Fu C., Meng Y., Sang D., Yin P., Wu J., Tang Y., Lu T., Wang Z.Y., Tadege M., Lin H.	Overexpression of the WOX gene STENOFOLIA improves biomass yield and sugar release in transgenic grasses and display altered cytokinin homeostasis.	PLoS Genet.	13(3)	e1006649	2017		
44154	28315751	Wang M., Lu Y., Botella J.R., Mao Y., Hua K., Zhu J.K.	Gene Targeting by Homology-Directed Repair in?Rice Using a Geminivirus-Based CRISPR/Cas9 System.	Mol Plant			2017		
44155	28278353	Li Y., Zhang Q., Liu Q., Meissle M., Yang Y., Wang Y., Hua H., Chen X., Peng Y., Romeis J.	Bt rice in China - focusing the nontarget risk assessment.	Plant Biotechnol. J.			2017		
44156	28262736	Qiu L., Fan J., Liu L., Zhang B., Wang X., Lei C., Lin Y., Ma W.	Knockdown of the MAPK p38 pathway increases the susceptibility of Chilo suppressalis larvae to Bacillus thuringiensis Cry1Ca toxin.	Sci Rep	7	43964	2017		
44157	28483051	Bi Z., Zhang Y., Wu W., Zhan X., Yu N., Xu T., Liu Q., Li Z., Shen X., Chen D., Cheng S., Cao L.	es7, encoding a ferredoxin-dependent Glutamate synthase, functions in nitrogen metabolism and impacts leaf senescence in rice.	Plant Sci.	259	24-34	2017		
44158	28262713	Ranjan R., Khurana R., Malik N., Badoni S., Parida S.K., Kapoor S., Tyagi A.K.	bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice.	Sci Rep	7	43397	2017		
44159	28447047	Roodgar-Nashta M., Shahpiri A.	Replacement of threonine-55 with glycine decreases the reduction rate of OsTrx20 by glutathione.	Mol Biol Res Commun	6(1)	33-40	2017		
44160	28260782	Zhang B., Zhang L., Li F., Zhang D., Liu X., Wang H., Xu Z., Chu C., Zhou Y.	Control of secondary cell wall patterning involves xylan deacetylation by a GDSL esterase.	Nat Plants	3	17017	2017		
44161	28349175	Zhang N., Fan X., Cui F., Zhao C., Zhang W., Zhao X., Yang L., Pan R., Chen M., Han J., Ji J., Liu D., Zhao Z., Tong Y., Zhang A., Wang T., Li J.	Characterization of the temporal and spatial expression of wheat (Triticum aestivum L.) plant height at the QTL level and their influence on yield-related traits.	Theor. Appl. Genet.			2017		
44162	28343064	Zeng X., Zeng Z., Liu C., Yuan W., Hou N., Bian H., Zhu M., Han N.	A barley homolog of yeast ATG6 is involved in multiple abiotic stress responses and stress resistance regulation.	Plant Physiol. Biochem.	115	97-106	2017		
44163	28368284	Welner D.H., Tsai A.Y., DeGiovanni A.M., Scheller H.V., Adams P.D.	X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa.	Acta Crystallogr F Struct Biol Commun	73(Pt 4)	241-245	2017		
44164	28292004	Wu Y., Yang W., Wei J., Yoon H., An G.	Transcription Factor OsDOF18 Controls Ammonium Uptake by Inducing Ammonium Transporters in Rice Roots.	Mol. Cells	40(3)	178-185	2017		
44165	28260830	Bheemanahalli R., Sathishraj R., Manoharan M., Sumanth H.N., Muthurajan R., Ishimaru T., Krishna J.S.	Is early morning flowering an effective trait to minimize heat stress damage during flowering in rice?	Field Crops Res.	203	238-242	2017		
44166	28254681	Giuliano G.	Provitamin A biofortification of crop plants: a gold rush with many miners.	Curr. Opin. Biotechnol.	44	169-180	2017		
44167	28300754	Tran L.H., Jung S.	Effects of Light-Emitting Diode Irradiation on Growth Characteristics and Regulation of Porphyrin Biosynthesis in Rice Seedlings.	Int J Mol Sci	18(3)		2017	YGL98,YLC2,_,_,CAB1R,_,_,_	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,OsHO2, HO2, OsHO-2, HO-2,RbcS3, OsRBCS3, OsRbcS3, rbcS ,PPX, PPO1 ,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,CP24, Lhcb6,ALAD, HEMB
44168	28101936	Zhang H.Y., Lei G., Zhou H.W., He C., Liao J.L., Huang Y.J.	Quantitative iTRAQ-based proteomic analysis of rice grains to assess high night temperature stress.	Proteomics	17(5)		2017		
44169	28283703	Zhou Y., Xie Y., Cai J., Liu C., Zhu H., Jiang R., Zhong Y., Zhang G., Tan B., Liu G., Fu X., Liu Z., Wang S., Zhang G., Zeng R.	Substitution mapping of QTLs controlling seed dormancy using single segment substitution lines derived from multiple cultivated rice donors in seven cropping seasons.	Theor. Appl. Genet.			2017		
44170	28115496	Lin C.W., Huang L.Y., Huang C.L., Wang Y.C., Lai P.H., Wang H.V., Chang W.C., Chiang T.Y., Huang H.J.	Common Stress Transcriptome Analysis Reveals Functional and Genomic Architecture Differences Between Early and Delayed Response Genes.	Plant Cell Physiol.	58(3)	546-559	2017	_,PP2C1,GA2OX9,MSRMK2,NH1,ACS2,ACS1	LRR-RLK,OsPP2C1, OsSIPP2C1, OsPP2C68, PP2C68, OsPP108,OsGA2ox9, GA2ox7, 2-ODD35, Os2-ODD35, 2ODD35, Os2ODD35,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsACS2, Os-ACS2,ACC1*, OsACS1, Os-ACS1, ACC1
44171	28154240	Deng Y., Zhai K., Xie Z., Yang D., Zhu X., Liu J., Wang X., Qin P., Yang Y., Zhang G., Li Q., Zhang J., Wu S., Milazzo J., Mao B., Wang E., Xie H., Tharreau D., He Z.	Epigenetic regulation of antagonistic receptors confers rice blast resistance with yield balance.	Science	355(6328)	962-965	2017	AGO4A,_,_,PIGM	OsAGO4a, AGO4-2,PigmS,PigmR,Pigm(t), Pi-gm(t), Pigm
44172	28146469	Yamaji N., Takemoto Y., Miyaji T., Mitani-Ueno N., Yoshida K.T., Ma J.F.	Erratum: Reducing phosphorus accumulation in rice grains with an impaired transporter in the node.	Nature	543(7643)	136	2017		
44173	28230139		Daring deep-sea explorers, armyworm offensive and GM-rice theft.	Nature	542(7642)	396-397	2017		
44174	28179101	Saha J., Giri K.	Molecular phylogenomic study and the role of exogenous spermidine in the metabolic adjustment of endogenous polyamine in two rice cultivars under salt stress.	Gene	609	88-103	2017	PAO7,DAO1 ,ODC2,PAOB,SPDS1,PAO4,ODCA,SAMDC,PAO5,CPA2,DAO5,ADC2,ADC3,ODCB,SAMDC2,_,PAOA,AIH,_,SAMDC3,SAMDC5,ODC4,CPA4,DAO4,CPA1,DAO3,SAMDC6,CPA3,SPMS2,PAO3,NGLF,ADC1,SPDS2,PAO1,DAO2	OsPAO7, OsPAO3, PAO3,OsDAO1, OsCuDAO1, CuDAO1,OsODC2,PAOb, OsPAOb, OsPAO6, OsPAO2, PAO6, PAO2,OsSPDS1, OsSPDS, SPDS,OsPAO4, OsAO1, AO1,ODCa, OsODC1, ODC1 ,SamDC, AdoMetDC, AdoMetDC1, OsSAMDC1,OsPAO5, OsAO2, AO2,OsCPA2,OsDAO5, OsCuDAO5, CuDAO5,ADCa, OsAdc2, OsADC2,OsADC3,ODCb, OsODC3, ODC3,SamDC2, AdoMetDC2, OsSAMDC2,OsACL5, ACL5,PAOa, OsPAO2, PAO2, OsPAOa,OsAIH,SAMDC1, SAMDC, OsSAMDC4,OsSAMDC3,OsSAMDC5,OsODC4,OsCPA4,OsDAO4, OsCuDAO4, CuDAO4,OsCPA1,OsDAO3, OsCuDAO3, CuDAO3,OsSAMDC6,OsCPA3,OsSPMS2,OsPAO3, OsAO3, AO3,OsARG, ARG, Nglf, Nglf-1, OsAGM, AGM,OsADC1, ARGDC, ADC, OsAdc1,OsSPDS2, OsSPMS1, SPMS1,OsPAO1, OsAO4, AO4,OsDAO2, OsCuDAO2, CuDAO2
44175	28182328	Kang J., Li J., Gao S., Tian C., Zha X.	Overexpression of the leucine-rich receptor-like kinase gene LRK2 increases drought tolerance and tiller number in rice.	Plant Biotechnol. J.			2017	PIP2;3,XA21,_,_,RFA4,_,_	OsPIP2;3, PIP2-3, OsPIP2-2,Xa21*, Xa21, OsXA21,OsBRI1,OsCLVATA, CLVATA,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,LRK2
44176	28181537	Borah P., Sharma E., Kaur A., Chandel G., Mohapatra T., Kapoor S., Khurana J.P.	Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.	Sci Rep	7	42131	2017	_,SAUR57,ERD1,_,_,_,DREB1A,_,_,_,ALDC1,VP1,WRKY1	,OsSAUR57,CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 ,LEA D-34,OsEnS-64, PCC13-62,CYP72A1,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,MYB,ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1,AldC-1,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsWRKY1, OsWRKY1v2
44177	28220451	Li Z., Ao Y., Feng D., Liu J., Wang J., Wang H.B., Liu B.	OsRLCK 57, OsRLCK107 and OsRLCK118 Positively Regulate Chitin- and PGN-Induced Immunity in Rice.	Rice (N Y)	10(1)	6	2017	RLCK107,RLCK57,_,PAL1,RLCK118,_,JIOSPR10,PR10A	OsRLCK107,OsRLCK57,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsRLCK118,OsPR5, PR5,JIOsPR10, OsPR10, PR10 ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
44178	28220688	Zhong X., Yang J., Shi Y., Wang X., Wang G.L.	The DnaJ protein OsDjA6 negatively regulates rice innate immunity to the blast fungus Magnaporthe oryzae.	Mol. Plant Pathol.			2017	_,C3H40,_,PR1A,_,RUBI3,_,SCP45,_,_,_,WRKY45,PR5,_,_,RFA1,HAM1,NH1,DXS2	,OsC3H40,,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsRFP, OsZFP1 ,rubi3, UBQ3,,OsSCP45, OsSCP46, SCP46,OsDjA5,OsDjA6, DjA6,CK1_CaseinKinase_1a.3,OsWRKY45,OsPR5, Pir2, PR-5, PR5-1,,OsPP112, PP112, OsPP2Ac-4, PP2Ac-4 ,rfa1*, REFA1, refa1, OseEF-1A, eEF-1A, Osef1a1,OsSCL1, SCL1, OsHAM1, OsGRAS-9, OsGRAS-9, GRAS-9, GRAS9,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsDXS2, dxs2
44179	28234896	Deng L., Li L., Zhang S., Shen J., Li S., Hu S., Peng Q., Xiao J., Wu C.	Suppressor of RID1 (SID1) shares common targets with RID1 on florigen genes to initiate floral transition in rice.	PLoS Genet.	13(2)	e1006642	2017	_,_,RFT1,EHD2/RID1,EF1,HD3A,_	OsIDD4, IDD4, SID1,OsIDD6, IDD6,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsIDD1, IDD1
44180	28226420	Chen J., Fan X., Qian K., Zhang Y., Song M., Liu Y., Xu G., Fan X.	pOsNAR2.1:OsNAR2.1 expression enhances nitrogen uptake efficiency and grain yield in transgenic rice plants.	Plant Biotechnol. J.			2017	NRT2.2,NRT2.3,NRT2.1,NAR2.1	OsNRT2.2, OsNRT2.1,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A
44181	28157263	Li L., Wang F., Yan P., Jing W., Zhang C., Kudla J., Zhang W.	A phosphoinositide-specific phospholipase C pathway elicits stress-induced Ca(2+) signals and confers salt tolerance to rice.	New Phytol.	214(3)	1172-1187	2017	RAB16D,PLC2,LEA3-1,NHX1,PLC4,_,BZIP23,CML31,PLC3,CDPK13	rab21, OsLEA26, Rab16D, OsRab16,OsPLC2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsNHX1,OsPLC4,OsPI-PLC1, PI-PLC1, OsPLC1, PLC1 ,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsCML31, OsMSR2, MSR2,OsPLC3,OsCDPK13, OsCPK13, OsCDPK7, OsCPK13-1, OsCPK13-2
44182	28244201	Jung H., Chung P.J., Park S.H., Redillas M.C., Kim Y.S., Suh J.W., Kim J.K.	Overexpression of OsERF48 causes regulation of OsCML16, a calmodulin-like protein gene that enhances root growth and drought tolerance.	Plant Biotechnol. J.			2017	DHN1,WSI76,XTH9,ERF48,_,_,CML16,AGP3,DREB1C,GOLS1	LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24,OsXTH9, OsXET9, XTH1, OsXTH1,OsERF#048, OsERF048, OsERF48, AP2/EREBP#170, AP2/EREBP170,OsCCD1, CCD1 ,RS5, OsRS5,OsCML16,OsAGP3,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsGolS1, GolS1
44183	28173633	Zhao J., Zhang S., Dong J., Yang T., Mao X., Liu Q., Wang X., Liu B.	A novel functional gene associated with cold tolerance at the seedling stage in rice.	Plant Biotechnol. J.			2017	_	qCTS-9 
44184	28230163	Bakshi A., Moin M., Kumar M.U., Reddy A.B., Ren M., Datla R., Siddiq E.A., Kirti P.B.	Ectopic expression of Arabidopsis Target of Rapamycin (AtTOR) improves water-use efficiency and yield potential in rice.	Sci Rep	7	42835	2017	_,_	OsTOR, TOR,OsWD40-81, OsLST8, LST8
44185	28223030	Ansarypour Z., Shahpiri A.	Heterologous expression of a rice metallothionein isoform (OsMTI-1b) in Saccharomyces cerevisiae enhances cadmium, hydrogen peroxide and ethanol tolerance.	Braz. J. Microbiol.			2017	MTI1B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1
44186	28229491	Yue W., Ying Y., Wang C., Zhao Y., Dong C., Whelan J., Shou H.	OsNLA1, a RING-type ubiquitin ligase, maintains phosphate homeostasis in Oryza sativa via degradation of phosphate transporters.	Plant J.			2017	_,PT8,_,PT2	OsRFPHC-13, OsNLA, NAL, OsNLA1, NAL1,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsRFPHC-1, OsNLA2, NLA2 ,OsPT2, PTH1-2, OsPht1;2, PHT1;2
44187	28160062	Beringer J., Chen W., Garton R., Sardesai N., Wang P.H., Zhou N., Gupta M., Wu H.	Comparison of the impact of viral and plant-derived promoters regulating selectable marker gene on maize transformation and transgene expression.	Plant Cell Rep.	36(4)	519-528	2017	ACT1	act1, AC1, RAC1, RAc1, ACT11, OsACT1
44188	28244994	Zong Y., Wang Y., Li C., Zhang R., Chen K., Ran Y., Qiu J.L., Wang D., Gao C.	Precise base editing in rice, wheat and maize with a Cas9-cytidine deaminase fusion.	Nat. Biotechnol.	35(5)	438-440	2017		
44189	28282268	Song H.T., Yang Y.M., Liu D.K., Xu X.Q., Xiao W.J., Liu Z.L., Xia W.C., Wang C.Y., Yu X., Jiang Z.B.	Construction of recombinant Yarrowia lipolytica and its application in bio-transformation of lignocellulose.	Bioengineered		1-6	2017		
44190	28189051	Meng D., Fricke W.	Changes in root hydraulic conductivity facilitate the overall hydraulic response of rice (Oryza sativa L.) cultivars to salt and osmotic stress.	Plant Physiol. Biochem.	113	64-77	2017		
44191	28235420	Xu J., Li Y., Wang Y., Liu X., Zhu X.G.	Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves.	BMC Res Notes	10(1)	108	2017		
44192	28185358	Taniguchi M., Ochiai A., Toyoda R., Sato T., Saitoh E., Kato T., Tanaka T.	Effects of arginine and leucine substitutions on anti-endotoxic activities and mechanisms of action of cationic and amphipathic antimicrobial octadecapeptide from rice alpha-amylase.	J. Pept. Sci.	23(3)	252-260	2017		
44193	28243709	Kasuga K., Sasaki A., Matsuo T., Yamamoto C., Minato Y., Kuwahara N., Fujii C., Kobayashi M., Agematu H., Tamura T., Komatsu M., Ishikawa J., Ikeda H., Kojima I.	Heterologous production of kasugamycin, an aminoglycoside antibiotic from Streptomyces kasugaensis, in Streptomyces lividans and Rhodococcus erythropolis L-88 by constitutive expression of the biosynthetic gene cluster.	Appl. Microbiol. Biotechnol.	101(10)	4259-4268	2017		
44194	28483049	Wang W.J., Zheng K.L., Gong X.D., Xu J.L., Huang J.R., Lin D.Z., Dong Y.J.	The rice TCD11 encoding plastid ribosomal protein S6 is essential for chloroplast development at low temperature.	Plant Sci.	259	1-11	2017	TCD11	RPS6, OsRPS6, OsTCD11
44195	28282527	Onaga G., Wydra K., Koopmann B., Chebotarov D., S?r? Y., Von Tiedemann A.	High temperature effects on Pi54 conferred resistance to Magnaporthe oryzae in two genetic backgrounds of Oryza sativa.	J. Plant Physiol.	212	80-93	2017		
44196	28245796	Li C., Luo C., Zhou Z., Wang R., Ling F., Xiao L., Lin Y., Chen H.	Gene expression and plant hormone levels in two contrasting rice genotypes responding to brown planthopper infestation.	BMC Plant Biol.	17(1)	57	2017		
44197	28173747	Liu P.L., Du L., Huang Y., Gao S.M., Yu M.	Origin and diversification of leucine-rich repeat receptor-like protein kinase (LRR-RLK) genes in plants.	BMC Evol. Biol.	17(1)	47	2017		
44198	28215140	Javed M., Solanki M., Sinha A., Shukla L.I.	Position based nucleotide analysis of miR168 family in higher plants and its targets in mammalian transcripts.	Microrna			2017		
44199	28150142	Vatansever R., Filiz E., Eroglu S.	Genome-wide exploration of metal tolerance protein (MTP) genes in common wheat (Triticum aestivum): insights into metal homeostasis and biofortification.	Biometals	30(2)	217-235	2017		
44200	28176282	Dos Santos RS., Farias D.D.R., Pegoraro C., Rombaldi C.V., Fukao T., Wing R.A., de Oliveira AC.	Evolutionary analysis of the SUB1 locus across the Oryza genomes.	Rice (N Y)	10(1)	4	2017		
44201	28166742	Li X., Shahid M.Q., Xia J., Lu Z., Fang N., Wang L., Wu J., Chen Z., Liu X.	Analysis of small RNAs revealed differential expressions during pollen and embryo sac development in autotetraploid rice.	BMC Genomics	18(1)	129	2017		
44202	28225074	Peng X., Yan T., Sun M.	The WASP-Arp2/3 complex signal cascade is involved in actin-dependent sperm nuclei migration during double fertilization in tobacco and maize.	Sci Rep	7	43161	2017		
44203	28205154	Tang M., Ning Y., Shu X., Dong B., Zhang H., Wu D., Wang H., Wang G.L., Zhou B.	The Nup98 Homolog APIP12 Targeted by the Effector AvrPiz-t is Involved in Rice Basal Resistance Against Magnaporthe oryzae.	Rice (N Y)	10(1)	5	2017	RBBI3-3,PR10A,CHT8,_,PR10B,_,PR1A,_,CHT1,_,_,PR1B,_,_,PR4C,PR4,_,_,PR1-12	RBBI3-3, OsBBPI, BBPI,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14,MOS3/SAR3, MOS3, SAR3, OsNucAP1, NUCAP1, OsNup96, Nup96,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b ,OsNucAP2, NUCAP2,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,APIP12,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsPR2, PR2, OsGlu1, Glu1,APIP6,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsNucAP3, NUCAP3,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10,OsPR4c,OsPR4, OsPR4a, PR4a, OsPR-4,TLP, PR5,PR10,OsPR1#012, OsPR1-12
44204	28330563	Itoh Y., Crofts N., Abe M., Hosaka Y., Fujita N.	Characterization of the endosperm starch and the pleiotropic effects of biosynthetic enzymes on their properties in novel mutant rice lines with high resistant starch and amylose content.	Plant Sci.	258	52-60	2017		
44205	28202263	Yu H.Y., Wang X., Li F., Li B., Liu C., Wang Q., Lei J.	Arsenic mobility and bioavailability in paddy soil under iron compound amendments at different growth stages of rice.	Environ. Pollut.	224	136-147	2017		
44206	28199670	Wang S., Lei C., Wang J., Ma J., Tang S., Wang C., Zhao K., Tian P., Zhang H., Qi C., Cheng Z., Zhang X., Guo X., Liu L., Wu C., Wan J.	SPL33, encoding an eEF1A-like protein, negatively regulates cell death and defense responses in rice.	J. Exp. Bot.	68(5)	899-913	2017	_,SODB,RBCS,PR10A,_,SPL33,POX3006,FGL,SGR,RBCL	OsHPPD, HPPD, Osl30, l30,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Osl2,LMM5.1, SPL33/LMM5.1,POX3006, prx114, PO-C1, POC-1, POC1,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,sgr(t), sgr, OsSGR, OsSgr,rbcL, rbcA, OsrbcL
44207	28193162	Wang Y., Qiao L., Bai J., Wang P., Duan W., Yuan S., Yuan G., Zhang F., Zhang L., Zhao C.	Genome-wide characterization of JASMONATE-ZIM DOMAIN transcription repressors in wheat (Triticum aestivum L.).	BMC Genomics	18(1)	152	2017		
44208	28236273	Wu Z.J., Wang W.L., Zhuang J.	Developmental processes and responses to hormonal stimuli in tea plant (Camellia sinensis) leaves are controlled by GRF and GIF gene families.	Funct. Integr. Genomics			2017		
44209	28042888	Ye M., Song Y.Y., Baerson S.R., Long J., Wang J., Pan Z., Lin W.X., Zeng R.S.	Ratoon rice generated from primed parent plants exhibit enhanced herbivore resistance.	Plant Cell Environ.	40(5)	779-787	2017		
44210	28232208	Wang Y., Gupta R., Song W., Huh H.H., Lee S.E., Wu J., Agrawal G.K., Rakwal R., Kang K.Y., Park S.R., Kim S.T.	Label-free quantitative secretome analysis of Xanthomonas oryzae pv. oryzae highlights the involvement of a novel cysteine protease in its pathogenicity.	J Proteomics			2017		
44211	28243987	Inukai T.	Differential Regulation of Starch-synthetic Gene Expression in Endosperm Between Indica and Japonica Rice Cultivars.	Rice (N Y)	10(1)	7	2017		
44212	28213905	Yu C., Chen H., Tian F., Yang F., Yuan X., Yang C.H., He C.	A ten gene-containing genomic island determines flagellin glycosylation: implication for its regulatory role in motility and virulence of Xanthomonas oryzae pv. oryzae.	Mol. Plant Pathol.			2017		
44213	28282528	Sun L., Di D., Li G., Kronzucker H.J., Shi W.	Spatio-temporal dynamics in global rice gene expression (Oryza sativa?L.) in response to high ammonium stress.	J. Plant Physiol.	212	94-104	2017		
44214	28162958	Zhao J., Liu P., Li C., Wang Y., Guo L., Jiang G., Zhai W.	lmm5.1 and lmm5.4, two eukaryotic translation elongation factor 1A-like gene family members, negatively affect cell death and disease resistance in rice.	J Genet Genomics	44(2)	107-118	2017	_,SPL33	LMM5.4,LMM5.1, SPL33/LMM5.1
44215	28205522	Zheng X.M., Tao Y.L., Chi H., Wan F.H., Chu D.	Adaptability of small brown planthopper to four rice cultivars using life table and population projection method.	Sci Rep	7	42399	2017		
44216	28205641	Han Y., Ma F., Nawaz M., Wang Y., Cai W., Zhao J., He Y., Hua H., Zou Y.	The tiered-evaluation of the effects of transgenic Cry1C rice on Cyrtorhinus lividipennis, a main predator of Nilaparvata lugens.	Sci Rep	7	42572	2017		
44217	28211909	Tang X., Lowder L.G., Zhang T., Malzahn A.A., Zheng X., Voytas D.F., Zhong Z., Chen Y., Ren Q., Li Q., Kirkland E.R., Zhang Y., Qi Y.	A CRISPR-Cpf1 system for efficient genome editing and transcriptional repression in plants.	Nat Plants	3	17018	2017		
44218	28170228	Jia M., Zhou K., Tufts S., Schulte S., Peters R.J.	A Pair of Residues That Interactively Affect Diterpene Synthase Product Outcome.	ACS Chem. Biol.	12(3)	862-867	2017		
44219	28238020	Conner J.A., Podio M., Ozias-Akins P.	Haploid embryo production in rice and maize induced by PsASGR-BBML transgenes.	Plant Reproduction	30(1)	41-52	2017		
44220	28371690	Singh A.P., Dixit G., Kumar A., Mishra S., Kumar N., Dixit S., Singh P.K., Dwivedi S., Trivedi P.K., Pandey V., Dhankher O.P., Norton G.J., Chakrabarty D., Tripathi R.D.	A protective role for nitric oxide and salicylic acid for arsenite phytotoxicity in rice (Oryza sativa L.).	Plant Physiol. Biochem.	115	163-173	2017		
44221	28169454	Fort D.J., Todhunter K., Fort T.D., Mathis M.B., Walker R., Hansel M., Hall S., Richards R., Anderson K.	Toxicity of sulfide to early life stages of wild rice (Zizania palustris).	Environmental Toxicology and Chemistry			2017		
44222	28168155	He X., Chen X., Lin S., Mo X., Zhou P., Zhang Z., Lu Y., Yang Y., Gu H., Shang Z., Lou Y., Wu J.	Diversity-Oriented Synthesis of Natural-Product-like Libraries Containing a 3-Methylbenzofuran Moiety for the Discovery of New Chemical Elicitors.	ChemistryOpen	6(1)	102-111	2017		
44223	28291639	Li X., Zhou W., Ren Y., Tian X., Lv T., Wang Z., Fang J., Chu C., Yang J., Bu Q.	High-efficiency breeding of early-maturing rice cultivars via CRISPR/Cas9-mediated genome editing.	J Genet Genomics	44(3)	175-178	2017		
44224	28192204	Kuttiyatveetil J.R., Sanders D.A.	Analysis of plant UDP-arabinopyranose mutase (UAM): Role of divalent metals and structure prediction.	Biochim. Biophys. Acta	1865(5)	510-519	2017		
44225	28212609	Kan C.C., Chung T.Y., Wu H.Y., Juo Y.A., Hsieh M.H.	Exogenous glutamate rapidly induces the expression of genes involved in metabolism and defense responses in rice roots.	BMC Genomics	18(1)	186	2017		
44226	28163300	Li N., Chen J., Yang F., Wei S., Kong L., Ding X., Chu Z.	Identification of two novel Rhizoctonia solani-inducible cis-acting elements in the promoter of the maize gene, GRMZM2G315431.	Sci Rep	7	42059	2017		
44227	28082603	Vilela M.M., Del Bem LE., Van Sluys MA., de Setta N., Kitajima J.P., Cruz G.M., Sfor?a DA., de Souza AP., Ferreira P.C., Grativol C., Cardoso-Silva CB., Vicentini R., Vincentz M.	Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum.	Genome Biol Evol	9(2)	266-278	2017		
44228	28461723	Ling L., Song L., Wang Y., Guo C.	Genome-wide analysis and expression patterns of the NAC transcription factor family in Medicago truncatula.	Physiol Mol Biol Plants	23(2)	343-356	2017		
44229	28251460	Cheng Q., Mao W., Xie W., Liu Q., Cao J., Yuan M., Zhang Q., Li X., Wang S.	Characterization of a disease susceptibility locus for exploring an efficient way to improve rice resistance against bacterial blight.	Sci China Life Sci	60(3)	298-306	2017		
44230	28087829	Hwang Y., Choi H.S., Cho H.M., Cho H.T.	Tracheophytes Contain Conserved Orthologs of a Basic Helix-Loop-Helix Transcription Factor That Modulate root hair SPECIFIC Genes.	Plant Cell	29(1)	39-53	2017	_,_	OsbHLH130, bHLH130, OsRSL9, RSL9,OsbHLH128, bHLH128, OsRSL6, RSL6
44231	28082384	Pu C.X., Han Y.F., Zhu S., Song F.Y., Zhao Y., Wang C.Y., Zhang Y.C., Yang Q., Wang J., Bu S.L., Sun L.J., Zhang S.W., Zhang S.Q., Sun D.Y., Sun Y.	The Rice Receptor-Like Kinases DWARF AND RUNTISH SPIKELET1 and 2 Repress Cell Death and Affect Sugar Utilization during Reproductive Development.	Plant Cell	29(1)	70-89	2017	_,CYP704B2,DRUS1,UGP2,MST8,_,UDT1,DRUS2,CP1,WX1,CSA,DPW2	OSINV4, OsINV4, INV4, OsCIN3,OsCYP704B2,OsCrRLK1L8, CrRLK1L8, FLR1,Ugp2, OsUgp2,OsMST8, OSMST8,OsMS2, MS2, OsDPW, DPW, DPW1,Udt1, bHLH164, OsUDT1, OsbHLH164 ,YK1, OsCrRLK1L5,OsCP1, Os CP1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,csa,OsDPW2
44232	28100707	Qiao S., Sun S., Wang L., Wu Z., Li C., Li X., Wang T., Leng L., Tian W., Lu T., Wang X.	The RLA1/SMOS1 Transcription Factor Functions with OsBZR1 to Regulate Brassinosteroid Signaling and Rice Architecture.	Plant Cell	29(2)	292-309	2017	D11,D2,DWARF4,_,BZR1,_,ERF142,BRD1	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175,OsBZR1, Os BZR1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1
44233	28087830	Ortiz D., de Guillen K., Cesari S., Chalvon V., Gracy J., Padilla A., Kroj T.	Recognition of the Magnaporthe oryzae Effector AVR-Pia by the Decoy Domain of the Rice NLR Immune Receptor RGA5.	Plant Cell	29(1)	156-168	2017	_	Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5
44234	28100706	Liu Q., Ning Y., Zhang Y., Yu N., Zhao C., Zhan X., Wu W., Chen D., Wei X., Wang G.L., Cheng S., Cao L.	OsCUL3a Negatively Regulates Cell Death and Immunity by Degrading OsNPR1 in Rice.	Plant Cell	29(2)	345-359	2017	PAL1,CUL3A,PR1A,CUL3B,WRKY45,_,PR10A,NH1,AOS2,CUL3BC,_,PR1B	OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCUL3a, CUL3a ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsCUL3b, CUL3b,OsWRKY45,OsRBX1a, RBX1a,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsCUL3c, CUL3c,OsRBX1b, RBX1b,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
44235	28082511	Men X., Shi J., Liang W., Zhang Q., Lian G., Quan S., Zhu L., Luo Z., Chen M., Zhang D.	Glycerol-3-Phosphate Acyltransferase 3 (OsGPAT3) is required for anther development and male fertility in rice.	J. Exp. Bot.	68(3)	513-526	2017	_,_,_,_,_,_,_,GPAT3,MTR1,_,CYP704B2,_,_,_,_,_,_,_,_,_,TDR,_,CYP703A3	GPAT,GPAT,GPAT,OsbHLH142, bHLH142, TIP2, OsTIP2,GPAT,GPAT,OsMS2, MS2, OsDPW, DPW, DPW1,OsGPAT3,OsMTR1,GPAT,OsCYP704B2,GPAT,GPAT,GPAT,GPAT,GPAT, OsGPAT,GPAT,GPAT,GPAT,GPAT, OsGPAT,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,GPAT,OsCYP703A3
44236	28146098	Liu Q., Luo L., Wang X., Shen Z., Zheng L.	Comprehensive Analysis of Rice Laccase Gene (OsLAC) Family and Ectopic Expression of OsLAC10 Enhances Tolerance to Copper Stress in Arabidopsis.	Int J Mol Sci	18(2)		2017	LAC25,LAC2,LAC11,LAC7,LAC4,LAC26,LAC28,LAC13,LAC6,LAC22,LAC20,LAC15,LAC8,LAC9,LAC3,LAC1,LAC21,LAC17,LAC24,LAC23,LAC16,LAC18,LAC27,LAC5,LAC12,LAC19,LAC10,LAC30,LAC29	OsLAC25,OsLAC2,Lac, OsLAC11, LAC10, OsLAC10,OsLAC7,Oslacc, lacc, OsLAC4,OsLAC26,OsLAC28,OsLAC13,OsLAC6,OsLAC22,OsLAC20,OsLAC, OsLAC15, OsLAC13, LAC13 ,OsLAC8, OsLAC7, LAC7,OsLAC9,OsChI1, ChI1, OsLAC3,OsLAC1 ,OsLAC21,OsLAC17,OsLAC24,OsLAC23,OsLAC16,OsLAC18,OsLAC27,OsLAC5,OsLAC12,OsLAC19,OsLAC10,OsLAC30,OsLAC29
44237	28079456	Hakata M., Muramatsu M., Nakamura H., Hara N., Kishimoto M., Iida-Okada K., Kajikawa M., Imai-Toki N., Toki S., Nagamura Y., Yamakawa H., Ichikawa H.	Overexpression of TIFY genes promotes plant growth in rice through jasmonate signaling.	Biosci. Biotechnol. Biochem.	81(5)	906-913	2017	TIFY11A,TIFY10C,TIFY9,TIFY11D,TIFY10B,TIFY11C,TIFY11E,TIFY10A,TIFY11B,EG2	OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9 ,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2
44238	28111288	Wang C., Wang G., Zhang C., Zhu P., Dai H., Yu N., He Z., Xu L., Wang E.	OsCERK1-Mediated Chitin Perception and Immune Signaling Requires Receptor-like Cytoplasmic Kinase 185 to Activate an MAPK Cascade in Rice.	Mol Plant	10(4)	619-633	2017	_,_,_,MKK5,RLCK185,_,SMG1,CHT1,PR10A	OsMAPKKKepsilon, MAPKKKepsilon,YDA1, OsMKKK10, MKKK10,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsMKK5, BUD1, OsBUD1,OsRLCK185,OsMAPKKKalpha, MAPKKKalpha,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
44239	28344585	Kumar M., Choi J., An G., Kim S.R.	Ectopic Expression of OsSta2 Enhances Salt Stress Tolerance in Rice.	Front Plant Sci	8	316	2017	ERF95	OsERF#095, OsERF095, OsERF95, AP2/EREBP#020, AP2/EREBP20, OsSta2, Sta2 
44240	28278216	Masuda H., Shimochi E., Hamada T., Senoura T., Kobayashi T., Aung M.S., Ishimaru Y., Ogo Y., Nakanishi H., Nishizawa N.K.	A new transgenic rice line exhibiting enhanced ferric iron reduction and phytosiderophore production confers tolerance to low iron availability in calcareous soil.	PLoS ONE	12(3)	e0173441	2017	NAS2,NAS1,YSL15,_,IRT1,NAAT1,DMAS1,TOM1	OsNAS2,OsNAS1,OsYSL15, OsYs7,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsIRT1,OsNAAT1,OsDMAS1,OsTOM1, ZIFL4, OsZIFL4 
44241	28069545	Hirano K., Yoshida H., Aya K., Kawamura M., Hayashi M., Hobo T., Sato-Izawa K., Kitano H., Ueguchi-Tanaka M., Matsuoka M.	SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.	Mol Plant	10(4)	590-604	2017	GRAS4,GRAS7,SLR1,GRAS26,ERF142,DLT,SHR1,IAA3,GRAS10,GRAS37,NSP2,PHI1	OsGRAS-4, OsGRAS4, GRAS-4,OsGRAS-7, OsGRAS7, GRAS-7,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsGRAS-26, OsGRAS26, GRAS-26,OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38,OsIAA3,OsGRAS-10, OsGRAS10, GRAS-10,OsGRAS-37, OsGRAS37, GRAS-37,Os NSP2, OsNSP2, OsGRAS-13, OsGRAS13, GRAS-13, GRAS13,OsPHI-1, PHI-1
44242	28326089	Yang J., Yuan Z., Meng Q., Huang G., P?rin C., Bureau C., Meunier A.C., Ingouff M., Bennett M.J., Liang W., Zhang D.	Dynamic Regulation of Auxin Response during Rice Development Revealed by Newly Established Hormone Biosensor Markers.	Front Plant Sci	8	256	2017	PIN1A,GH3-2,JAR1,PIN1D,JAR2,_,JAR3,PIN1C,PIN1B	PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsGH3-2, OsGH3.2, GH3.2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsPIN1D, OsPIN1d,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1
44243	28117552	Li F., Xie G., Huang J., Zhang R., Li Y., Zhang M., Wang Y., Li A., Li X., Xia T., Qu C., Hu F., Ragauskas A.J., Peng L.	OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice.	Plant Biotechnol. J.			2017	CESA7,BC6,BC7	OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
44244	28163713	Byun M.Y., Cui L.H., Oh T.K., Jung Y.J., Lee A., Park K.Y., Kang B.G., Kim W.T.	Homologous U-box E3 Ubiquitin Ligases OsPUB2 and OsPUB3 Are Involved in the Positive Regulation of Low Temperature Stress Response in Rice (Oryza sativa L.).	Front Plant Sci	8	16	2017	_,GAD3,MDR7,WRKY77,TPP2,_,_	OsMYBS3, MYBS3,OsGAD3,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11,OsWRKY77, WRKY-77,OsTPP2,OsPUB2,OsPUB3, PUB3
44245	28054650	Li S., Wei X., Ren Y., Qiu J., Jiao G., Guo X., Tang S., Wan J., Hu P.	osbt1 encodes an ADP-glucose transporter involved in starch synthesis and compound granule formation in rice endosperm.	Sci Rep	7	40124	2017	BT1-1	OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2
44246	28424709	Holappa L.D., Ronald P.C., Kramer E.M.	Evolutionary Analysis of Snf1-Related Protein Kinase2 (SnRK2) and Calcium Sensor (SCS) Gene Lineages, and Dimerization of Rice Homologs, Suggest Deep Biochemical Conservation across Angiosperms.	Front Plant Sci	8	395	2017	OSK1,SAPK8,SAPK2,SAPK9,OSK4,_,SCS1,SAPK10,SAPK3,SAPK1,SAPK4,SAPK6,SAPK5	osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a,OsSAPK8,OsSAPK2,OsSAPK9,osk4, OsK4, OsATG1c, ATG1C, SnRK1B, snrk1b, SnRK1B/OSK24, OSK24, OsK24, OsSNRK1b,OsDSR-1, DSR-1,OsSCS1,OsSAPK10,OsSAPK3, REK,OsSAPK1,OsSAPK4,OsSAPK6, OSRK1,OsSAPK5
44247	28081268	Li Z., Ding B., Zhou X., Wang G.L.	The Rice Dynamin-Related Protein OsDRP1E Negatively Regulates Programmed Cell Death by Controlling the Release of cytochrome c from mitochondria.	PLoS Pathog.	13(1)	e1006157	2017	_,KS4,_,AOS2,PR5,_,_,DJLM,_,_,_,_,NAC4,_	OsDRP3C, DRP3C,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsDRP1C, DRP1C, OsDRP1D, DRP1D,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR5, Pir2, PR-5, PR5-1,OsDRP3B, DRP3B,OsDRP1A, DRP1A,DJ-LM, OsDRP1E, DRP1E ,OsDRP1B, DRP1B,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,OsDRP3A, DRP3A,OsDRP2A, DRP2A,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsDRP2C, DRP2C
44248	28119718	Liu H., Guo Z., Gu F., Ke S., Sun D., Dong S., Liu W., Huang M., Xiao W., Yang G., Liu Y., Guo T., Wang H., Wang J., Chen Z.	4-Coumarate-CoA Ligase-Like Gene OsAAE3 Negatively Mediates the Rice Blast Resistance, Floret Development and Lignin Biosynthesis.	Front Plant Sci	7	2041	2016	PR1A,_,PR1B	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsAAE3, AAE3, OsOCS, OCS ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
44249	28095114	Tan J., Wu F., Wan J.	Flowering time regulation by the CONSTANS-like gene OsCOL10.	Plant Signal Behav	12(1)	e1267893	2017	RFT1,_,GHD7,HD3A,EF1	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
44250	28068433	Bollinedi H., S GK., Prabhu K.V., Singh N.K., Mishra S., Khurana J.P., Singh A.K.	Molecular and Functional Characterization of GR2-R1 Event Based Backcross Derived Lines of Golden Rice in the Genetic Background of a Mega Rice Variety Swarna.	PLoS ONE	12(1)	e0169600	2017	CPS1,NCED1,ABA1,GA20OX1,_	OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1
44251	28232844	Takatsuji H.	Regulating Tradeoffs to Improve Rice Production.	Front Plant Sci	8	171	2017	WRKY45,MKK10-2,NH1,MAPK6,_,WRKY62,_	OsWRKY45,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMPKK10-2D, MPKK10-2D, MPKK10.2,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsPP127, OsPTP1, PTP1,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsPTP2, PTP2
44252	28220140	Liu H., Dong S., Gu F., Liu W., Yang G., Huang M., Xiao W., Liu Y., Guo T., Wang H., Chen Z., Wang J.	NBS-LRR Protein Pik-H4 Interacts with OsBIHD1 to Balance Rice Blast Resistance and Growth by Coordinating Ethylene-Brassinosteroid Pathway.	Front Plant Sci	8	127	2017	PIK,ACO3,_,CYP734A2	Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,OsACO3,OsBIHD1, BIHD1,OsCYP734A2
44253	28049740	Wang C., Higgins J.D., He Y., Lu P., Zhang D., Liang W.	Resolvase OsGEN1 Mediates DNA Repair by Homologous Recombination.	Plant Physiol.	173(2)	1316-1329	2017	SEND1,RAD	OsSEND-1, OsSEND1,rad,rad*, OsRAD, GEN1, OsGEN-L, OsGEN1 
44254	28261251	Batth R., Singh K., Kumari S., Mustafiz A.	Transcript Profiling Reveals the Presence of Abiotic Stress and Developmental Stage Specific ascorbate oxidase Genes in Plants.	Front Plant Sci	8	198	2017	AAO3,_,AAO1,AAO2,AAO5	OsAAO3,OsORAP1, ORAP1, OzT9, AO, OsAAO4, AAO4,OsAAO1,OsAAO2, L-APX,OsAAO5
44255	28068345	Goretti D., Martignago D., Landini M., Brambilla V., G?mez-Ariza J., Gnesutta N., Galbiati F., Collani S., Takagi H., Terauchi R., Mantovani R., Fornara F.	Transcriptional and Post-transcriptional Mechanisms Limit HEADING DATE 1 (Hd1) Function to Adapt Rice to High Latitudes.	PLoS Genet.	13(1)	e1006530	2017	SE1,HD3A,HD2,HD5,HAP5E,HAP5A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2
44256	28129387	Wang X., Huang R., Quan R.	Mutation in Mg-protoporphyrin IX monomethyl ester cyclase Decreases Photosynthesis Capacity in Rice.	PLoS ONE	12(1)	e0171118	2017	YL1	MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP
44257	28116829	Mehra P., Pandey B.K., Giri J.	Improvement in phosphate acquisition and utilization by a secretory purple acid phosphatase (OsPAP21b) in rice.	Plant Biotechnol. J.			2017	PAP21B,PAP10A,PHR2,PT2,PAP10C,PT9,PAP27A,PAP23,PT4,PAP3B	OsPAP21b,OsPAP10a, PAP10,OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPAP10c,OsPT9, PHT1-9, OsPht1;9,OsPAP27a, NPP6, OsNPP6,OsPAP23,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPAP3b
44258	28298917	Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q.	Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice.	Front Plant Sci	8	268	2017	PIP2;6,NIP3;2,NRAMP1,LSI2,LSI6,_,PIP2;4,GRX9,LSI1,NIP3;1,PT8,STR5,GRX4,STR6,ACR2.2,PIP2;7,ACR2.1,MRP1,NIP1;1	OsPIP2;6, PIP2-6, OsPIP2-5,OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2,OsNramp1, OsNRAMP1, OsNramp6,Lsi2, SIET1, OsLsi2,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsCLT1, CLT1,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4,OsGRX9, OsGrx_C2.1, Grx_C2.1 ,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsNIP3;1, NIP3-1, OsNIP3.1, NIP3.1,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsStr5, OsHAC1;1, HAC1;1 ,OsGRX4, OsGrx_C7, Grx_C7,OsStr6, OsRhST, RLD, OsHAC1;2, HAC1;2,CDC25.2, OsACR2.2, OsStr21, STR21,OsPIP2;7, PIP2.7, PIP2-7, OsPIP2-6,CDC25.1, OsACR2.1, OsStr20, STR20,OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1
44259	27964781	Zhou B., Lin J.Z., Peng D., Yang Y.Z., Guo M., Tang D.Y., Tan X., Liu X.M.	Plant architecture and grain yield are regulated by the novel DHHC-type zinc finger protein genes in rice (Oryza sativa L.).	Plant Sci.	254	12-21	2017	DHHC1	OsDHHC1, OsPAT15, PAT15
44260	28197164	Ding W., Tong H., Zheng W., Ye J., Pan Z., Zhang B., Zhu S.	Isolation, Characterization and Transcriptome Analysis of a Cytokinin Receptor Mutant Osckt1 in Rice.	Front Plant Sci	8	88	2017	CKT1	OHK5, HK, OsHK6, HK6, Crl1a, Ohk5, OsHK1, OsCKT1 
44261	28134341	Hu D., Li Y., Jin W., Gong H., He Q., Li Y.	Identification and Characterization of a Plastidic Adenine Nucleotide Uniporter (OsBT1-3) Required for Chloroplast Development in the Early Leaf Stage of Rice.	Sci Rep	7	41355	2017	BT1-3	OsBT1-3, SLA
44262	28423046	Cui D., Tang C., Li J., A X., Yu T., Ma X., Zhang E., Wang Y., Cao G., Xu F., Dai L., Han L., Koh H.J.	Genetic structure and isolation by altitude in rice landraces of Yunnan, China revealed by nucleotide and microsatellite marker polymorphisms.	PLoS ONE	12(4)	e0175731	2017	EF1,GS5,_,PID3,GBSSII,_,_,CATA,LK3	Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsSCP26, SCP26, OsGS5,STS90,Pi-d3, Pid3, Pi25,GBSS2,STS22,NP1977, OsVDAC8, VDAC8, Os1977,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
44263	28197156	Adachi S., Yoshikawa K., Yamanouchi U., Tanabata T., Sun J., Ookawa T., Yamamoto T., Sage R.F., Hirasawa T., Yonemaru J.	Fine Mapping of Carbon Assimilation Rate 8, a Quantitative Trait Locus for Flag leaf nitrogen content, stomatal conductance and Photosynthesis in Rice.	Front Plant Sci	8	60	2017	HD5	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
44264	28491065	Yoo Y.H., Nalini Chandran AK., Park J.C., Gho Y.S., Lee S.W., An G., Jung K.H.	OsPhyB-Mediating Novel Regulatory Pathway for drought tolerance in Rice Root Identified by a Global RNA-Seq Transcriptome Analysis of Rice Genes in Response to Water Deficiencies.	Front Plant Sci	8	580	2017	_,PHYB,_,HSFB2C,_	,phyB, PHYB1, OsPHYB, OsphyB,,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,
44265	28062835	Lv Y., Yang M., Hu D., Yang Z., Ma S., Li X., Xiong L.	The osmyb30 Transcription Factor Suppresses cold tolerance by Interacting with a JAZ Protein and Suppressing beta-amylase Expression.	Plant Physiol.	173(2)	1475-1491	2017	TIFY11A,BMY2,BMY6,BMY10 ,BMY1,_	OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,,,,,OsMYB30, MYB30, OsMYB5P, MYB5P
44266	28067270	Ogawa S., Miyamoto K., Nemoto K., Sawasaki T., Yamane H., Nojiri H., Okada K.	OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability.	Sci Rep	7	40175	2017	_,_,NOMT,_,_,_	OsMYB14, MYB14, JAdMYB1,OsMYB55, OsMYB-2,OsNOMT, COMTL3, OsCOMTL3,OsICE1, ICE1, OsbHLH010, bHLH010, OsMYL1, MYL1, bHLH116 ,OsbHLH009, bHLH009, OsMYC2, MYC2,OsbHLH008, bHLH008, OsMYL2, MYL2
44267	28064119	Saidi M.N., Mergby D., Brini F.	Identification and expression analysis of the NAC transcription factor family in durum wheat (Triticum turgidum L. ssp. durum).	Plant Physiol. Biochem.	112	117-128	2017		
44268	28124144	Li J., Cai N.J., Xue J., Yang J., Chen J.P., Zhang H.M.	Interaction between southern rice black-streaked dwarf virus minor core protein P8 and a rice zinc finger transcription factor.	Arch. Virol.	162(5)	1261-1273	2017	_	OsbHLH033, bHLH033, bHLH33, OsZFP, ZFP 
44269	28293247	Huang H., Nguyen Thi Thu T., He X., Gravot A., Bernillon S., Ballini E., Morel J.B.	Increase of Fungal Pathogenicity and Role of Plant Glutamine in Nitrogen-Induced Susceptibility (NIS) To Rice Blast.	Front Plant Sci	8	265	2017	GLN1;2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2
44270	28043949	Zhu S., Wang J., Cai M., Zhang H., Wu F., Xu Y., Li C., Cheng Z., Zhang X., Guo X., Sheng P., Wu M., Wang J., Lei C., Wang J., Zhao Z., Wu C., Wang H., Wan J.	The OsHAPL1-DTH8-Hd1 complex functions as the transcription regulator to repress heading date in rice.	J. Exp. Bot.	68(3)	553-568	2017	DRAP2,EF1,SE1,HD3A,HD5,RFT1	OsDrAp2, DrAp2, OsHAPL1, HAPL1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
44271	28124210	Yabuki Y., Ohashi M., Imagawa F., Ishiyama K., Beier M.P., Konishi N., Umetsu-Ohashi T., Hayakawa T., Yamaya T., Kojima S.	A temporal and spatial contribution of asparaginase to asparagine catabolism during development of rice grains.	Rice (N Y)	10(1)	3	2017	ASNASE2,ASNASE1  	OsASNase2, ASNase2,OsASNase1, ASNase1 
44272	28394944	Zhang M., Liu B.	Identification of a rice metal tolerance protein OsMTP11 as a manganese transporter.	PLoS ONE	12(4)	e0174987	2017	MTP11	OsMTP11
44273	28102545	Almadanim M.C., Alexandre B.M., Rosa M.T., Sapeta H., Leit?o AE., Ramalho J.C., Lam T.T., Negr?o S., Abreu I.A., Oliveira M.M.	Rice calcium-dependent protein kinase OsCPK17 targets plasma membrane intrinsic protein and sucrose-phosphate synthase and is required for a proper cold stress response.	Plant Cell Environ.			2017	PDHE1A,SPS8,PIP2A,_,CDPK17,SPS11,ABC1,PIP2;6	OsPDHE1-A,OsSPS8, OsSPS4, SPS4,OsPIP2a, PIP2-1, PIP2a, PIP2.1, OsPIP2;1, OsPIP2-1,OsNR1, NR1, nia1, OsNIA1, NIA1,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,sps11, OsSPS11, OsSPS5, SPS5,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsPIP2;6, PIP2-6, OsPIP2-5
44274	28059073	Wu J., Yang R., Yang Z., Yao S., Zhao S., Wang Y., Li P., Song X., Jin L., Zhou T., Lan Y., Xie L., Zhou X., Chu C., Qi Y., Cao X., Li Y.	ROS accumulation and antiviral defence control by microRNA528 in rice.	Nat Plants	3	16203	2017		
44275	28119700	Zhao X., Chen T., Feng B., Zhang C., Peng S., Zhang X., Fu G., Tao L.	Non-photochemical Quenching Plays a Key Role in Light Acclimation of Rice Plants Differing in leaf color.	Front Plant Sci	7	1968	2016		
44276	28326091	Sun Y., Jiao G., Liu Z., Zhang X., Li J., Guo X., Du W., Du J., Francis F., Zhao Y., Xia L.	Generation of High-Amylose Rice through CRISPR/Cas9-Mediated Targeted Mutagenesis of Starch Branching Enzymes.	Front Plant Sci	8	298	2017		
44277	28303149	Singh U.M., Yadav S., Dixit S., Ramayya P.J., Devi M.N., Raman K.A., Kumar A.	QTL Hotspots for Early Vigor and Related Traits under Dry Direct-Seeded System in Rice (Oryza sativa L.).	Front Plant Sci	8	286	2017		
44278	28064177	Zhu X.F., Zhu C.Q., Wang C., Dong X.Y., Shen R.F.	Nitric oxide acts upstream of ethylene in cell wall phosphorus reutilization in phosphorus-deficient rice.	J. Exp. Bot.	68(3)	753-760	2017		
44279	28217135	Sun Y., Huang X., Ning Y., Jing W., Bruce T.J., Qi F., Xu Q., Wu K., Zhang Y., Guo Y.	TPS46, a Rice Terpene Synthase Conferring Natural Resistance to Bird Cherry-Oat Aphid, Rhopalosiphum padi (Linnaeus).	Front Plant Sci	8	110	2017	_	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10
44280	28101096	Wang X., Pang Y., Wang C., Chen K., Zhu Y., Shen C., Ali J., Xu J., Li Z.	New Candidate Genes Affecting Rice Grain Appearance and Milling Quality Detected by Genome-Wide and Gene-Based Association Analyses.	Front Plant Sci	7	1998	2016		
44281	28328971	Ying J., Zhao J., Hou Y., Wang Y., Qiu J., Li Z., Tong X., Shi Z., Zhu J., Zhang J.	Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos.	PLoS ONE	12(3)	e0173853	2017		
44282	28040882	Du Y., Liu L., Li M., Fang S., Shen X., Chu J., Zhang Z.	UNBRANCHED3 regulates branching by modulating cytokinin biosynthesis and signaling in maize and rice.	New Phytol.	214(2)	721-733	2017		
44283	28119424	Kono M., Yamori W., Suzuki Y., Terashima I.	Photoprotection of PSI by Far-Red Light Against the Fluctuating Light-Induced Photoinhibition in Arabidopsis thaliana and Field-Grown Plants.	Plant Cell Physiol.	58(1)	35-45	2017		
44284	28348570	Kaya H., Numa H., Nishizawa-Yokoi A., Toki S., Habu Y.	DNA Methylation Affects the Efficiency of Transcription Activator-Like Effector Nucleases-Mediated Genome Editing in Rice.	Front Plant Sci	8	302	2017		
44285	28448589	Awasthi J.P., Saha B., Regon P., Sahoo S., Chowra U., Pradhan A., Roy A., Panda S.K.	Morpho-physiological analysis of tolerance to aluminum toxicity in rice varieties of North East India.	PLoS ONE	12(4)	e0176357	2017		
44286	28428794	Yu H., Ruan B., Wang Z., Ren D., Zhang Y., Leng Y., Zeng D., Hu J., Zhang G., Zhu L., Gao Z., Chen G., Guo L., Chen W., Qian Q.	Fine Mapping of a Novel defective glume 1 (dg1) Mutant, Which Affects Vegetative and Spikelet Development in Rice.	Front Plant Sci	8	486	2017	D61,MADS4,MCM4,BZR1,LK3,CDKF;1,BRD1,CYCT1;1,BG1,DG1,LHS1,SPW1,GW2,GE1,RAP1B,DL,D2,MADS2,MCM5,GW8,RAP1A,EXPA32,_,RAG,EXPB5,MADS58,_,CDKB2;1 ,EXPA2	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsMADS4, PI1,OsMCM4,OsBZR1, Os BZR1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,CDKF;1, Orysa;CDKF;1, CDKF1, CDKF-1/CAK1AT, CDKF-1, CAK1AT, CAK1A,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,CycT1;1, CycT1;os;1, Orysa;CycT1;1, CYCT1,OsaBG1, OsBG1,,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,SPW1, spw1, MADS16, OsMADS16,OsGW2,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,DL, dl(lop), lop, dl, dl1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsMADS2, RMADS219, NMADS1, PI2, nmads1 ,OsMCM5,SPL16, OsSPL16, SLP1, qGW8,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsEXPA32,OsWD40-109,  WD40-109, OsCDC20, CDC20 ,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OxEXPB5, osaEXPb1.19,OsMADS58,OsACBP1, ACBP1,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
44287	28107426	Zhang J.W., Long Y., Xue M.D., Xiao X.G., Pei X.W.	Identification of microRNAs in Response to Drought in Common Wild Rice (Oryza rufipogon Griff.) Shoots and Roots.	PLoS ONE	12(1)	e0170330	2017		
44288	28070759	Han Z., Hu W., Tan C., Xing Y.	QTLs for heading date and plant height under multiple environments in rice.	Genetica	145(1)	67-77	2017		
44289	28487705	Pandit E., Tasleem S., Barik S.R., Mohanty D.P., Nayak D.K., Mohanty S.P., Das S., Pradhan S.K.	Genome-Wide Association Mapping Reveals Multiple QTLs Governing Tolerance Response for Seedling Stage Chilling Stress in Indica Rice.	Front Plant Sci	8	552	2017		
44290	28174588	Huang J., Wang Y., Liu W., Shen X., Fan Q., Jian S., Tang T.	EARE-1, a Transcriptionally Active Ty1/Copia-Like Retrotransposon Has Colonized the Genome of Excoecaria agallocha through Horizontal Transfer.	Front Plant Sci	8	45	2017		
44291	28321231	Tang Y., Liu K., Zhang J., Li X., Xu K., Zhang Y., Qi J., Yu D., Wang J., Li C.	JcDREB2, a Physic Nut AP2/ERF gene, Alters Plant Growth and Salinity Stress Responses in Transgenic Rice.	Front Plant Sci	8	306	2017		
44292	28439286	Zhao P., Zhang J., Qian C., Zhou Q., Zhao X., Chen G., Ma X.F.	SNP Discovery and Genetic Variation of Candidate Genes Relevant to heat tolerance and Agronomic Traits in Natural Populations of Sand Rice (Agriophyllum squarrosum).	Front Plant Sci	8	536	2017		
44293	28091610	Sun J., Shi S., Gong W., Yang J., Du L., Song S., Chen B., Zhang Z.	Evaluation of hyperspectral LiDAR for monitoring rice leaf nitrogen by comparison with multispectral LiDAR and passive spectrometer.	Sci Rep	7	40362	2017		
44294	28191468	Sahebi M., Hanafi M.M., Rafii M.Y., Azizi P., Abiri R., Kalhori N., Atabaki N.	Screening and Expression of a Silicon Transporter Gene (Lsi1) in Wild-Type Indica Rice Cultivars.	Biomed Res Int	2017	9064129	2017		
44295	28096805	Xiao N., Wu Y., Pan C., Yu L., Chen Y., Liu G., Li Y., Zhang X., Wang Z., Dai Z., Liang C., Li A.	Improving of Rice Blast Resistances in Japonica by Pyramiding Major R Genes.	Front Plant Sci	7	1918	2016		
44296	28278154	Ali J., Xu J.L., Gao Y.M., Ma X.F., Meng L.J., Wang Y., Pang Y.L., Guan Y.S., Xu M.R., Revilleza J.E., Franje N.J., Zhou S.C., Li Z.K.	Harnessing the hidden genetic diversity for improving multiple abiotic stress tolerance in rice (Oryza sativa L.).	PLoS ONE	12(3)	e0172515	2017		
44297	28144248	Li Y., Zhao S.L., Li J.L., Hu X.H., Wang H., Cao X.L., Xu Y.J., Zhao Z.X., Xiao Z.Y., Yang N., Fan J., Huang F., Wang W.M.	Osa-miR169 Negatively Regulates Rice Immunity against the Blast Fungus Magnaporthe oryzae.	Front Plant Sci	8	2	2017		
44298	28139777	Sun L., Wang Y., Liu L.L., Wang C., Gan T., Zhang Z., Wang Y., Wang D., Niu M., Long W., Li X., Zheng M., Jiang L., Wan J.	Isolation and characterization of a spotted leaf 32 mutant with early leaf senescence and enhanced defense response in rice.	Sci Rep	7	41846	2017	SALT,ABC1,WRKY23,SGR,_,WRKY72	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsWRKY23,sgr(t), sgr, OsSGR, OsSgr,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,OsWRKY72, WRKY-72
44299	28377781	Li S., Xia Q., Wang F., Yu X., Ma J., Kou H., Lin X., Gao X., Liu B.	Laser Irradiation-Induced DNA Methylation Changes Are Heritable and Accompanied with Transpositional Activation of mPing in Rice.	Front Plant Sci	8	363	2017	_,TA2,DRM2,MPING,MET1B,DRM3,CMT3,_,AGO1A,AGO4B,AGO1B,AGO4A	ROS1C, ROS1c, DME2,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1 ,OsDRM2, osdrm2, DRM2-1,mPing,OsMET1b, OsMET1-2, MET1b, MET1,OsDRM3, DRM2-2 ,OsCMT3, CMT3-1,OsDDM1b, DDM1b, DDM1,OsAGO1a, AGO1a, AGO10, AGO1-1 ,OsAGO4b, AGO4-1 ,OsAGO1b, AGO1b, AGO1-2 ,OsAGO4a, AGO4-2
44300	28085154	Lazar C.S., Baker B.J., Seitz K.W., Teske A.P.	Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches.	ISME J	11(5)	1118-1129	2017		
44301	28107733	Xiaochuang C., Chu Z., Lianfeng Z., Junhua Z., Hussain S., Lianghuan W., Qianyu J.	Glycine increases cold tolerance in rice via the regulation of N uptake, physiological characteristics, and photosynthesis.	Plant Physiol. Biochem.	112	251-260	2017		
44302	27896367	Sun B., Zhan X.D., Lin Z.C., Wu W.X., Yu P., Zhang Y.X., Sun L.P., Cao L.Y., Cheng S.H.	Erratum to: Fine mapping and candidate gene analysis of qHD5, a novel major QTL with pleiotropism for yield-related traits in rice (Oryza sativa L.).	Theor. Appl. Genet.	130(1)	259	2017		
44303	28128411	Hasan N., Rafii M.Y., Abdul Rahim H., Nusaibah S.A., Mazlan N., Abdullah S.	Genetic analysis and identification of SSR markers associated with rice blast disease in a BC2F1 backcross population.	Genet. Mol. Res.	16(1)		2017		
44304	28419172	Wang Z., Han Q., Zi Q., Lv S., Qiu D., Zeng H.	Enhanced disease resistance and drought tolerance in transgenic rice plants overexpressing protein elicitors from Magnaporthe oryzae.	PLoS ONE	12(4)	e0175734	2017		
44305	28392792	Cao Y.Y., Yang J.F., Liu T.Y., Su Z.F., Zhu F.Y., Chen M.X., Fan T., Ye N.H., Feng Z., Wang L.J., Hao G.F., Zhang J., Liu Y.G.	A Phylogenetically Informed Comparison of GH1 Hydrolases between Arabidopsis and Rice Response to Stressors.	Front Plant Sci	8	350	2017		
44306	28369122	Nakamura A., Tochio N., Fujioka S., Ito S., Kigawa T., Shimada Y., Matsuoka M., Yoshida S., Kinoshita T., Asami T., Seto H., Nakano T.	Molecular actions of two synthetic brassinosteroids, iso-carbaBL and 6-deoxoBL, which cause altered physiological activities between Arabidopsis and rice.	PLoS ONE	12(4)	e0174015	2017		
44307	28282385	Shakiba E., Edwards J.D., Jodari F., Duke S.E., Baldo A.M., Korniliev P., McCouch S.R., Eizenga G.C.	Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis.	PLoS ONE	12(3)	e0172133	2017		
44308	28361000	Hay F.R., Whitehouse K.J.	Rethinking the approach to viability monitoring in seed genebanks.	Conserv Physiol	5(1)	cox009	2017		
44309	28367158	Wu C., Cui K., Wang W., Li Q., Fahad S., Hu Q., Huang J., Nie L., Mohapatra P.K., Peng S.	Heat-Induced Cytokinin Transportation and Degradation Are Associated with Reduced Panicle Cytokinin Expression and Fewer Spikelets per Panicle in Rice.	Front Plant Sci	8	371	2017		
44310	28128414	Lu X.B.	Cytotoxicity evaluation of the whole protein extract from Bar-transgenic rice on Mus musculus lymphocytes.	Genet. Mol. Res.	16(1)		2017		
44311	28098179	Ye W., Yu H., Jian Y., Zeng J., Ji R., Chen H., Lou Y.	A salivary EF-hand calcium-binding protein of the brown planthopper Nilaparvata lugens functions as an effector for defense responses in rice.	Sci Rep	7	40498	2017		
44312	28116312	Saki E., Saiful Yazan L., Mohd Ali R., Ahmad Z.	Chemopreventive Effects of Germinated Rough Rice Crude Extract in Inhibiting Azoxymethane-Induced Aberrant Crypt Foci Formation in Sprague-Dawley Rats.	Biomed Res Int	2017	9517287	2017		
44313	28326093	Asaf S., Waqas M., Khan A.L., Khan M.A., Kang S.M., Imran Q.M., Shahzad R., Bilal S., Yun B.W., Lee I.J.	The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species.	Front Plant Sci	8	304	2017		
44314	28445532	Yadav M.K., S A., Ngangkham U., Shubudhi H.N., Bag M.K., Adak T., Munda S., Samantaray S., Jena M.	Use of molecular markers in identification and characterization of resistance to rice blast in India.	PLoS ONE	12(4)	e0176236	2017	PIZT,PIK,PI9,PIZ,PITA,PIKM,PIB,PI1,PIKP,PIKH,PI5	Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4,Pi9(t), Pi9(t)*, Pi9, Pi-9(t),Piz, Piz (Pi2, Pi-z, Piz), Pi-z, Pi2, Pi-2,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Pik-m, Pi-m, Pi-km, Pikm, Pi m, Pikm1-TS, Pikm2-TS, Pi-km1, Pi-km2,Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,Pi1, Pi-1, Pi1-5C, Pi1-6C,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pi5(t), Pi5, Pi3, RMg22, RMg21, Pi-5(t), Pi-5, Pi 5(t), Pi3(t), Pi5-1, Pi5-2
44315	28110460	Zhang H., Che J., Ge Y., Pei Y., Zhang L., Liu Q., Gu M., Tang S.	Ability of Rf5 and Rf6 to Restore Fertility of Chinsurah Boro II-type Cytoplasmic Male Sterile Oryza Sativa (ssp. Japonica) Lines.	Rice (N Y)	10(1)	2	2017		
44316	28149498	Ta K.N., Adam H., Staedler Y.M., Sch?nenberger J., Harrop T., Tregear J., Do N.V., Gantet P., Ghesqui?re A., Jouannic S.	Differences in meristem size and expression of branching genes are associated with variation in panicle phenotype in wild and domesticated African rice.	Evodevo	8	2	2017		
44317	28178571	Muthusamy S.K., Dalal M., Chinnusamy V., Bansal K.C.	Genome-wide identification and analysis of biotic and abiotic stress regulation of small heat shock protein (HSP20) family genes in bread wheat.	J. Plant Physiol.	211	100-113	2017		
44318	28056797	Yang N., Wang T.	Comparative proteomic analysis reveals a dynamic pollen plasma membrane protein map and the membrane landscape of receptor-like kinases and transporters important for pollen tube growth and interaction with pistils in rice.	BMC Plant Biol.	17(1)	2	2017		
44319	28134995	Nagel R., Turrini P.C., Nett R.S., Leach J.E., Verdier V., Van Sluys MA., Peters R.J.	An operon for production of bioactive gibberellin A4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola.	New Phytol.	214(3)	1260-1266	2017		
44320	28291806	Ju S., Yin N., Wang L., Zhang C., Wang Y.	Effects of silicon on Oryza sativa L. seedling roots under simulated acid rain stress.	PLoS ONE	12(3)	e0173378	2017		
44321	28174587	Liu Q., Yang T., Yu T., Zhang S., Mao X., Zhao J., Wang X., Dong J., Liu B.	Integrating Small RNA Sequencing with QTL Mapping for Identification of miRNAs and Their Target Genes Associated with heat tolerance at the Flowering Stage in Rice.	Front Plant Sci	8	43	2017		
44322	28113076	Guo Q., Meng L., Humphreys M.W., Scullion J., Mur L.A.	Expression of FlHMA3, a P1B2-ATPase from Festulolium loliaceum, correlates with response to cadmium stress.	Plant Physiol. Biochem.	112	270-277	2017		
44323	28494021	Tao T., Zhou C.J., Wang Q., Chen X.R., Sun Q., Zhao T.Y., Ye J.C., Wang Y., Zhang Z.Y., Zhang Y.L., Guo Z.J., Wang X.B., Li D.W., Yu J.L., Han C.G.	Rice black streaked dwarf virus P7-2 forms a SCF complex through binding to Oryza sativa SKP1-like proteins, and interacts with GID2 involved in the gibberellin pathway.	PLoS ONE	12(5)	e0177518	2017	_,_,_,_,_,GID2,_,_,_,_	OSK25,OSK20,OSK1, SKP1, OsSKP1,OSK10,OsCUL1, CUL1,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OSK5,OSK9,OSK6,OSK4
44324	28167952	Wu X., Yu Y., Baerson S.R., Song Y., Liang G., Ding C., Niu J., Pan Z., Zeng R.	Interactions between Nitrogen and Silicon in Rice and Their Effects on Resistance toward the Brown Planthopper Nilaparvata lugens.	Front Plant Sci	8	28	2017		
44325	28138057	Kakei Y., Nakamura A., Yamamoto M., Ishida Y., Yamazaki C., Sato A., Narukawa-Nara M., Soeno K., Shimada Y.	Biochemical and chemical biology study of rice OsTAR1 revealed that tryptophan aminotransferase is involved in auxin biosynthesis; identification of a potent OsTAR1 inhibitor, pyruvamine2031.	Plant Cell Physiol.			2017		
44326	28139322	Xu X., Meng B., Zhang C., Feng X., Gu C., Guo J., Bishop K., Xu Z., Zhang S., Qiu G.	The local impact of a coal-fired power plant on inorganic mercury and methyl-mercury distribution in rice (Oryza sativa L.).	Environ. Pollut.	223	11-18	2017		
44327	28105032	Horvath M., Steinbiss H.H., Reiss B.	Gene Targeting Without DSB Induction Is Inefficient in Barley.	Front Plant Sci	7	1973	2016		
44328	28044270	Ribaudo C.M., Cur? JA., Cantore M.L.	Activation of a calcium-dependent protein kinase involved in the Azospirillum growth promotion in rice.	World J. Microbiol. Biotechnol.	33(2)	22	2017		
44329	28105039	Xu E., Chen M., He H., Zhan C., Cheng Y., Zhang H., Wang Z.	Proteomic Analysis Reveals Proteins Involved in Seed Imbibition under Salt Stress in Rice.	Front Plant Sci	7	2006	2016	_,_,AGPS2,GLUBX,_,GLUB5,AGPL2,GLUA3,FLO4,WX1,ARS,_,GLUC,PGK2	OsEnS-57, EnS-57, CDP3.1 ,CDP3.2,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1,ARP,GluB5, GLU2.3 ,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx, ,BPM ,GluC, OsEnS-36, EnS-36, GLU2.2,OsPGK2, OsPGK2a, OsPGK2b, OsPGK2c, PKP 
44330	28443109	Neelam K., Thakur S., Neha, Yadav I.S., Kumar K., Dhaliwal S.S., Singh K.	Novel Alleles of Phosphorus-Starvation Tolerance 1 Gene (PSTOL1) from Oryza rufipogon Confers High phosphorus uptake Efficiency.	Front Plant Sci	8	509	2017		
44331	28119474	Waite C., Schumacher J., Jovanovic M., Bennett M., Buck M.	Negative Autogenous Control of the Master Type III Secretion System Regulator HrpL in Pseudomonas syringae.	MBio	8(1)		2017		
44332	28421099	Wang J., Hu P., Chen Z., Liu Q., Wei C.	Progress in High-amylose Cereal Crops through Inactivation of Starch Branching Enzymes.	Front Plant Sci	8	469	2017		
44333	28078486	Kwon C.T., Kim S.H., Song G., Kim D., Paek N.C.	Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.	Rice (N Y)	10(1)	1	2017	_,YGL10,_,FGL,_,CAB2R,_	OsChlH, ChlH, CHLH, OsCHLH,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,GSA, GSAT, HEML,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsPorA, PORA, OsPORA,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,CP29, OsCP29, LHCB4, Lhcb4 
44334	28421086	Li K., Bao J., Corke H., Sun M.	Association Analysis of Markers Derived from Starch Biosynthesis Related Genes with Starch Physicochemical Properties in the USDA Rice Mini-Core Collection.	Front Plant Sci	8	424	2017		
44335	28261224	Moreno-Alvarado M., Garc?a-Morales S., Trejo-T?llez LI., Hidalgo-Contreras JV., G?mez-Merino FC.	Aluminum Enhances Growth and Sugar Concentration, Alters Macronutrient Status and Regulates the Expression of NAC Transcription Factors in Rice.	Front Plant Sci	8	73	2017		
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44341	28265566	Trinh H., Nguyen K.T., Nguyen L.V., Pham H.Q., Huong C.T., Xuan T.D., Anh H., Caccamo M., Ayling S., Diep N.T., Nguyen C., Trung K.H., Khanh T.D.	Whole-Genome Characteristics and Polymorphic Analysis of Vietnamese Rice Landraces as a Comprehensive Information Resource for Marker-Assisted Selection.	International Journal of Genomics	2017	9272363	2017		
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44347	28097084	Xiao X.H., Yang M., Sui J.L., Qi J.Y., Fang Y.J., Hu S.N., Tang C.R.	The calcium-dependent protein kinase (CDPK) and CDPK-related kinase gene families in Hevea brasiliensis-comparison with five other plant species in structure, evolution, and expression.	FEBS Open Bio	7(1)	4-24	2017		
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44349	28179912	Ye T., Hao Y.H., Yu L., Shi H., Reiter R.J., Feng Y.Q.	A Simple, Rapid Method for Determination of Melatonin in Plant Tissues by UPLC Coupled with High Resolution Orbitrap Mass Spectrometry.	Front Plant Sci	8	64	2017		
44350	28199904	Essemine J., Xiao Y., Qu M., Mi H., Zhu X.G.	Cyclic electron flow may provide some protection against PSII photoinhibition in rice (Oryza sativa L.) leaves under heat stress.	J. Plant Physiol.	211	138-146	2017		
44351	28079051	Wang D., Huang J., Nie L., Wang F., Ling X., Cui K., Li Y., Peng S.	Integrated crop management practices for maximizing grain yield of double-season rice crop.	Sci Rep	7	38982	2017		
44352	28094773	Liu J., Xu H., Jiang Y., Zhang K., Hu Y., Zeng Z.	Methane Emissions and Microbial Communities as Influenced by Dual Cropping of Azolla along with Early Rice.	Sci Rep	7	40635	2017		
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44355	28355306	Zhang F., Wu Z.C., Wang M.M., Zhang F., Dingkuhn M., Xu J.L., Zhou Y.L., Li Z.K.	Genome-wide association analysis identifies resistance loci for bacterial blight in a diverse collection of indica rice germplasm.	PLoS ONE	12(3)	e0174598	2017		
44356	28179911	Sun R., Ye R., Gao L., Zhang L., Wang R., Mao T., Zheng Y., Li D., Lin Y.	Characterization and Ectopic Expression of CoWRI1, an AP2/EREBP Domain-Containing Transcription Factor from Coconut (Cocos nucifera L.) Endosperm, Changes the Seeds Oil Content in Transgenic Arabidopsis thaliana and Rice (Oryza sativa L.).	Front Plant Sci	8	63	2017		
44357	28280498	Jain P., Singh P.K., Kapoor R., Khanna A., Solanke A.U., Krishnan S.G., Singh A.K., Sharma V., Sharma T.R.	Understanding Host-Pathogen Interactions with Expression Profiling of NILs Carrying Rice-Blast Resistance Pi9 Gene.	Front Plant Sci	8	93	2017		
44358	28250586	Khan F., Upreti P., Singh R., Shukla P.K., Shirke P.A.	Physiological performance of two contrasting rice varieties under water stress.	Physiol Mol Biol Plants	23(1)	85-97	2017		
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44360	28365721	Yue J., Zhang D., Ban R., Ma X., Chen D., Li G., Liu J., Wisniewski M., Droby S., Liu Y.	PCPPI: a comprehensive database for the prediction of Penicillium-Crop protein-protein interactions.	Database (Oxford)	2017(1)		2017		
44361	28126846	Ji R., Ye W., Chen H., Zeng J., Li H., Yu H., Li J., Lou Y.	A Salivary endo-beta-1,4-glucanase Acts as an Effector That Enables the Brown Planthopper to Feed on Rice.	Plant Physiol.	173(3)	1920-1932	2017		
44362	28220138	Zhou J., Li X., Chen Y., Dai C.C.	De novo Transcriptome Assembly of Phomopsis liquidambari Provides Insights into Genes Associated with Different Lifestyles in Rice (Oryza sativa L.).	Front Plant Sci	8	121	2017		
44363	28144699	Pidon H., Ghesqui?re A., Ch?ron S., Issaka S., H?brard E., Sabot F., Kolade O., Silu? D., Albar L.	Fine mapping of RYMV3: a new resistance gene to Rice yellow mottle virus from Oryza glaberrima.	Theor. Appl. Genet.	130(4)	807-818	2017		
44364	28487708	Richa K., Tiwari I.M., Devanna B.N., Botella J.R., Sharma V., Sharma T.R.	Novel chitinase gene LOC_Os11g47510 from Indica Rice Tetep Provides Enhanced Resistance against Sheath Blight Pathogen Rhizoctonia solani in Rice.	Front Plant Sci	8	596	2017		
44365	28422981	Sun Z., Yin X., Ding J., Yu D., Hu M., Sun X., Tan Y., Sheng X., Liu L., Mo Y., Ouyang N., Jiang B., Yuan G., Duan M., Yuan D., Fang J.	QTL analysis and dissection of panicle components in rice using advanced backcross populations derived from Oryza Sativa cultivars HR1128 and 'Nipponbare'.	PLoS ONE	12(4)	e0175692	2017		
44366	27709567	Xu R., Wei P., Yang J.	Use of CRISPR/Cas Genome Editing Technology for Targeted Mutagenesis in Rice.	Methods Mol. Biol.	1498	33-40	2017		
44367	28487722	Zhang M., Lu Q., Wu W., Niu X., Wang C., Feng Y., Xu Q., Wang S., Yuan X., Yu H., Wang Y., Wei X.	Association Mapping Reveals Novel Genetic Loci Contributing to Flooding Tolerance during Germination in Indica Rice.	Front Plant Sci	8	678	2017		
44368	28045983	Wang J., Wang Y., Gao C., Jiang L., Guo D.	PPero, a Computational Model for Plant PTS1 Type Peroxisomal Protein Prediction.	PLoS ONE	12(1)	e0168912	2017		
44369	28250588	Nguyen V.C., Nguyen V.K., Singh C.H., Devi G.S., Reddy V.S., Leelavathi S.	Fast recovery of transgenic submergence tolerant rice cultivars of North-East India by early co-cultivation of Agrobacterium with pre-cultured callus.	Physiol Mol Biol Plants	23(1)	115-123	2017		
44370	28152098	Lafarge T., Bueno C., Frouin J., Jacquin L., Courtois B., Ahmadi N.	Genome-wide association analysis for heat tolerance at flowering detected a large set of genes involved in adaptation to thermal and other stresses.	PLoS ONE	12(2)	e0171254	2017		
44371	28101092	Kondo M., Hirai H., Furukawa T., Yoshida Y., Suzuki A., Kawaguchi T., Che F.S.	Frameshift Mutation Confers Function as Virulence Factor to Leucine-Rich Repeat Protein from Acidovorax avenae.	Front Plant Sci	7	1988	2016		
44372	28103264	Gu D., Zhen F., Hannaway D.B., Zhu Y., Liu L., Cao W., Tang L.	Quantitative Classification of Rice (Oryza sativa L.) root length and Diameter Using Image Analysis.	PLoS ONE	12(1)	e0169968	2017		
44373	28149257	Bui T.G.T., Hoa N.T.L., Yen J.Y., Schafleitner R.	PCR-based assays for validation of single nucleotide polymorphism markers in rice and mungbean.	Hereditas	154	3	2017		
44374	28106116	Hong Y., Yang Y., Zhang H., Huang L., Li D., Song F.	Overexpression of MoSM1, encoding for an immunity-inducing protein from Magnaporthe oryzae, in rice confers broad-spectrum resistance against fungal and bacterial diseases.	Sci Rep	7	41037	2017		
44375	28094280	Mishra S., Mattusch J., Wennrich R.	Accumulation and transformation of inorganic and organic arsenic in rice and role of thiol-complexation to restrict their translocation to shoot.	Sci Rep	7	40522	2017		
44376	28400748	Peng J., Wegner C.E., Liesack W.	Short-Term Exposure of Paddy Soil Microbial Communities to Salt Stress Triggers Different Transcriptional Responses of Key Taxonomic Groups.	Front Microbiol	8	400	2017		
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44379	28424710	Xie Q., Liu X., Zhang Y., Tang J., Yin D., Fan B., Zhu L., Han L., Song G., Li D.	Identification and Characterization of microRNA319a and Its Putative Target Gene, PvPCF5, in the Bioenergy Grass Switchgrass (Panicum virgatum).	Front Plant Sci	8	396	2017		
44380	28119704	Yue L., Twell D., Kuang Y., Liao J., Zhou X.	Transcriptome Analysis of Hamelia patens (Rubiaceae) Anthers Reveals Candidate Genes for Tapetum and pollen Wall Development.	Front Plant Sci	7	1991	2016		
44381	28117452	Zheng Y., Zhang H., Deng X., Liu J., Chen H.	The relationship between vacuolation and initiation of PCD in rice (Oryza sativa) aleurone cells.	Sci Rep	7	41245	2017		
44382	28069706	Catoni M., Griffiths J., Becker C., Zabet N.R., Bayon C., Dapp M., Lieberman-Lazarovich M., Weigel D., Paszkowski J.	DNA sequence properties that predict susceptibility to epiallelic switching.	EMBO J.	36(5)	617-628	2017		
44383	28223994	Boonyaves K., Wu T.Y., Gruissem W., Bhullar N.K.	Enhanced Grain Iron Levels in Rice Expressing an IRON-REGULATED METAL TRANSPORTER, NICOTIANAMINE SYNTHASE, and FERRITIN Gene Cassette.	Front Plant Sci	8	130	2017		
44384	28265990	Singh P., Sinha A.K.	Interplay Between Auxin and Cytokinin and Its Impact on Mitogen Activated Protein Kinase (MAPK).	Methods Mol. Biol.	1569	93-100	2017		
44385	28071676	Guo H., Mendrikahy J.N., Xie L., Deng J., Lu Z., Wu J., Li X., Shahid M.Q., Liu X.	Transcriptome analysis of neo-tetraploid rice reveals specific differential gene expressions associated with fertility and heterosis.	Sci Rep	7	40139	2017		
44386	28303127	Potshangbam M., Devi S.I., Sahoo D., Strobel G.A.	Functional Characterization of Endophytic Fungal Community Associated with Oryza sativa L. and Zea mays L.	Front Microbiol	8	325	2017		
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44388	28250591	Cai H., Chen Y., Zhang M., Cai R., Cheng B., Ma Q., Zhao Y.	A novel GRAS transcription factor, ZmGRAS20, regulates starch biosynthesis in rice endosperm.	Physiol Mol Biol Plants	23(1)	143-154	2017		
44389	28070613	Pham V.T., Rediers H., Ghequire M.G., Nguyen H.H., De Mot R., Vanderleyden J., Spaepen S.	The plant growth-promoting effect of the nitrogen-fixing endophyte Pseudomonas stutzeri A15.	Arch. Microbiol.	199(3)	513-517	2017		
44390	28054169	Chang H., Huang H.E., Cheng C.F., Ho M.H., Ger M.J.	Constitutive expression of a plant ferredoxin-like protein (PFLP) enhances capacity of photosynthetic carbon assimilation in rice (Oryza sativa).	Transgenic Res.	26(2)	279-289	2017		
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44392	28228768	Zaid I.U., Tang W., Liu E., Khan S.U., Wang H., Mawuli E.W., Hong D.	Genome-Wide Single-Nucleotide Polymorphisms in CMS and Restorer Lines Discovered by Genotyping Using Sequencing and Association with Marker-Combining Ability for 12 Yield-Related Traits in Oryza sativa L. subsp. Japonica.	Front Plant Sci	8	143	2017		
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44397	28484477	Brikis C.J., Zarei A., Trobacher C.P., DeEll J.R., Akama K., Mullen R.T., Bozzo G.G., Shelp B.J.	Ancient Plant Glyoxylate/Succinic Semialdehyde Reductases: GLYR1s Are Cytosolic, Whereas GLYR2s Are Localized to Both Mitochondria and Plastids.	Front Plant Sci	8	601	2017		
44398	28220436	Yamaguchi K., Kawasaki T.	Chitin-Triggered MAPK Activation and ROS Generation in Rice Suspension-Cultured Cells.	Methods Mol. Biol.	1578	309-316	2017		
44399	28081161	Wang C., Lai D.Y., Sardans J., Wang W., Zeng C., Pe?uelas J.	Factors Related with CH4 and N2O Emissions from a Paddy Field: Clues for Management implications.	PLoS ONE	12(1)	e0169254	2017		
44400	28373862	Li S., Song L., Gao X., Jin Y., Liu S., Shen Q., Zou J.	Microbial Abundances Predict Methane and Nitrous Oxide Fluxes from a Windrow Composting System.	Front Microbiol	8	409	2017		
44401	28100213	Wang J., Peng Y., Xiao K., Wei B., Hu J., Wang Z., Song Q., Zhou X.	Transcriptomic response of wolf spider, Pardosa pseudoannulata, to transgenic rice expressing Bacillus thuringiensis Cry1Ab protein.	BMC Biotechnol.	17(1)	7	2017		
44402	28059483	Tang D., Peng Y., Lin J., Du C., Yang Y., Wang D., Liu C., Yan L., Zhao X., Li X., Chen L., Liu X.	Ectopic expression of fungal EcGDH improves nitrogen assimilation and grain yield in rice.	J Integr Plant Biol			2017		
44403	28149305	Wu X., Ning F., Hu X., Wang W.	Genetic Modification for Improving Seed Vigor Is Transitioning from Model Plants to Crop Plants.	Front Plant Sci	8	8	2017		
44404	28444369	Oi T., Enomoto S., Nakao T., Arai S., Yamane K., Taniguchi M.	Three-dimensional intracellular structure of a whole rice mesophyll cell observed with FIB-SEM.	Ann. Bot.			2017		
44405	28421550	Thomas E., Tovar E., Villafa?e C., Bocanegra J.L., Moreno R.	Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia.	Rice (N Y)	10(1)	13	2017		
44406	28392385	Wang S., Li P., Yu J., Guo P., Wang S.	Multi-scale structures and functional properties of starches from Indica hybrid, Japonica and waxy rice.	Int. J. Biol. Macromol.	102	136-143	2017		
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44408	28382632	Wang Y., Tong X., Qiu J., Li Z., Zhao J., Hou Y., Tang L., Zhang J.	A phosphoproteomic landscape of rice (Oryza sativa) tissues.	Physiol Plant			2017		
44409	28444595	Mohanta T.K., Bae H.	Cloning and characterization of auxin efflux carrier genes EcPIN1a and EcPIN1b from finger millet Eleusine coracana L.	3 Biotech	7(1)	51	2017		
44410	28439066	Yang L., Han Y., Li P., Wen L., Hou M.	Silicon amendment to rice plants impairs sucking behaviors and population growth in the phloem feeder Nilaparvata lugens (Hemiptera: Delphacidae).	Sci Rep	7(1)	1101	2017		
44411	28429576	Zhang H., Xu H., Feng M., Zhu Y.	Suppression of OsMADS7 in rice endosperm stabilizes amylose content under high temperature stress.	Plant Biotechnol. J.			2017		
44412	28429297	Singh A., Carandang J., Gonzaga Z.J.C., Collard B.C.Y., Ismail A.M., Septiningsih E.M.	Identification of QTLs for yield and agronomic traits in rice under stagnant flooding conditions.	Rice (N Y)	10(1)	15	2017		
44413	28420613	Xiaobin H., Ran X., Penggen D., Haiyue Y., Yuehua L., Yunhai L.	Genetic analysis and identification of candidate genes for two spotted-leaf mutants (spl101 and spl102) in rice.	Yi Chuan	39(4)	346-353	2017		
44414	28447607	Shivaraj S.M., Deshmukh R.K., Rai R., B?langer R., Agrawal P.K., Dash P.K.	Genome-wide identification, characterization, and expression profile of aquaporin gene family in flax (Linum usitatissimum).	Sci Rep	7	46137	2017		
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44426	28241800	Hussain R.M., Ali M., Feng X., Li X.	The essence of NAC gene family to the cultivation of drought-resistant soybean (Glycine max L. Merr.) cultivars.	BMC Plant Biol.	17(1)	55	2017		
44427	28168408	Khanal S., Kim C., Auckland S.A., Rainville L.K., Adhikari J., Schwartz B.M., Paterson A.H.	SSR-enriched genetic linkage maps of bermudagrass (Cynodon dactylon?~?transvaalensis), and their comparison with allied plant genomes.	Theor. Appl. Genet.	130(4)	819-839	2017		
44428	28388358	Chung S.I., Lee S.C., Kang M.Y.	Physicochemical properties of giant embryo rice Seonong 17 and Keunnunjami.	Biosci. Biotechnol. Biochem.	81(5)	972-978	2017		
44429	28069894	Singh A., Septiningsih E.M., Balyan H.S., Singh N.K., Rai V.	Genetics, Physiological Mechanisms and Breeding of Flood-Tolerant Rice (Oryza sativa L.).	Plant Cell Physiol.	58(2)	185-197	2017		
44430	28099032	Zhang K., Li Y., Li T., Li Z.G., Hsiang T., Zhang Z., Sun W.	Pathogenicity Genes in Ustilaginoidea virens Revealed by a Predicted protein-protein Interaction Network.	J. Proteome Res.	16(3)	1193-1206	2017		
44431	28214729	Takahashi N., Sunohara Y., Fujiwara M., Matsumoto H.	Improved tolerance to transplanting injury and chilling stress in rice seedlings treated with orysastrobin.	Plant Physiol. Biochem.	113	161-167	2017		
44432	28238052	Ishikawa R., Nishimura A., Htun T.M., Nishioka R., Oka Y., Tsujimura Y., Inoue C., Ishii T.	Estimation of loci involved in non-shattering of seeds in early rice domestication.	Genetica	145(2)	201-207	2017		
44433	28192179	Battu L., Reddy M.M., Goud B.S., Ulaganathan K., Kandasamy U.	Genome inside genome: NGS based identification and assembly of endophytic Sphingopyxis granuli and Pseudomonas aeruginosa genomes from rice genomic reads.	Genomics			2017		
44434	28254371	Zhang Z., Zhang Y., Zhao H., Huang F., Zhang Z., Lin W.	The important functionality of 14-3-3 isoforms in rice roots revealed by affinity chromatography.	J Proteomics	158	20-30	2017		
44435	15599031	Jian-Jun Wang, Xu-Dong Zhu, Lin-You Wang, Li-Hua Zhang, Qing-Zhong Xue, Zu-Hua He	[Physiological and genetic analysis of lesion resembling disease mutants (lrd) of Oryza sativa L].	Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao	30(3)	331-8	2004	_	RLS1, LRD43
44436	0	DAI Gao-Meng ZHU Xiao-Yan, LI Yun-Feng, LING Ying-Hua, ZHAO Fang-Ming, YANG Zheng-Lin, HE Guang-Hua	Genetic Analysis and Fine Mapping of a lesion mimic Mutant spl31 in Rice	Acta Agronomica Sinica	39(7)	1223-120	2013	SPL31	
44437	0	Jorge Luis Fuentes, Fernando Jos? Correa-Victoria, Escobar F., Prado G., Aricapa G., Myriam Cristina Duque, Tohme J.	Identification of microsatellite markers linked to the blast resistance gene Pi-1(t) in rice	Euphytica	160(3)	295-304	2008	PI1	Pi1, Pi-1, Pi1-5C, Pi1-6C
44438	16105854	Luo H., Song F., Zheng Z.	Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses.	J. Exp. Bot.	56(420)	2673-82	2005	_	OsBIHD1, BIHD1
44439	0	Sun Y., Zhang Y.J., Cao G.C., Gu S.H., Wu K.M., Gao X.W., Guo Y.Y.	Rice gene expression profiles responding to larval feeding of the striped stem borer at the 1st to 2nd instar stage	Insect Science	18	273-281	2011	_	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10
44440	20565634	M A Campbell, P C Ronald	Characterization of four rice mutants with alterations in the defence response pathway.	Mol. Plant Pathol.	6(1)	11-21	2005	XA21,PR10A,PR1B	Xa21*, Xa21, OsXA21,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
44454	19766710	Sang-Gyu Kim, Lee S., Pil Joon Seo, Soon-Kap Kim, Jeong-Kook Kim, Chung-Mo Park	Genome-scale screening and molecular characterization of membrane-bound transcription factors in Arabidopsis and rice.	Genomics	95(1)	56-65	2010	NAC40,NAC8,NAC37,NAC42,NAC70	ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5,OsNAC8, ONAC074, ONAC74, NAC74, OsNAC8/ONAC074, OsNTL3, NTL3,ONAC037, ONAC37, OsNTL2, NTL2,ONAC042, ONAC42, ONAC051, ONAC51, OsNTL4, NTL4,ONAC070, ONAC70, OsNTL6, NTL6
44455	28578018	Qin R., Zeng D., Liang R., Yang C., Akhter D., Alamin M., Jin X., Shi C.	Rice gene SDL/RNRS1, encoding the small subunit of ribonucleotide reductase, is required for chlorophyll synthesis and plant growth development.	Gene	627	351-362	2017	RNRS2,ST1	,st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL
44456	28487409	Zhou S., Jiang W., Long F., Cheng S., Yang W., Zhao Y., Zhou D.X.	Rice Homeodomain Protein WOX11 Recruits a Histone Acetyltransferase Complex to Establish Programs of Cell Proliferation of crown root Meristem.	Plant Cell	29(5)	1088-1104	2017	CSLF6,ALDP,BGLU5,HAG702,BGLU33,WOX11,_,BC6,CEL9A,PIN9,_	OsCslF6, OsCSLF6, OsCLD3, CLD3,Aldo, OsALDO, ALDO,Os1bglu5, Os1Bglu5, 1bglu5,OsHAG702, GCN5 ,Os9bglu33, Os9Bglu33, 9bglu33,OsWOX11, Os WOX11, OsWOX12A,EXPA23, OsEXPA23,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A ,OsPIN9,OsHXA701, HXA701, ADA2 
44457	28559349	Zuo X., Lu H., Jiang L., Zhang J., Yang X., Huan X., He K., Wang C., Wu N.	Dating rice remains through phytolith carbon-14 study reveals domestication at the beginning of the Holocene.	Proc. Natl. Acad. Sci. U.S.A.	114(25)	6486-6491	2017		
44458	28461499	Zhang H., Zhang J., Yan J., Gou F., Mao Y., Tang G., Botella J.R., Zhu J.K.	Short tandem target mimic rice lines uncover functions of miRNAs in regulating important agronomic traits.	Proc. Natl. Acad. Sci. U.S.A.	114(20)	5277-5282	2017	MIR398A,SODCC2	miR398a, osa-miR398a, osa-MIR398a,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2
44459	28465411	Xiong Q., Ma B., Lu X., Huang Y.H., He S.J., Yang C., Yin C.C., Zhao H., Zhou Y., Zhang W.K., Wang W.S., Li Z.K., Chen S.Y., Zhang J.S.	Ethylene-Inhibited Jasmonic Acid Biosynthesis Promotes Mesocotyl/Coleoptile Elongation of Etiolated Rice Seedlings.	Plant Cell	29(5)	1053-1072	2017	_,EXPB6,EXPB4,_,_,EG1,EXPA4,EIL2,EIN2,_,_,EXPB11,_,AOC,EXPA2	OsJIP-2, JIP-2, OsJIP2, JIP2,OsEXPB6, osaEXPb1.8, EXPb1.8,OsEXPB4, OsaEXPb1.7, EXPb1.7,OsJMT, JMT ,OsJIP-4, JIP-4, OsJIP4, JIP4,eg1, GY1,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,OsEIL2,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsJIP-1, JIP-1, OsJIP1, JIP1,OsEXPLA1, EXPLA1, RIP3,OsEXPB11, osaEXPb1.20,OsJIP-3, JIP-3, OsJIP3, JIP3,OsAOC, AOC1, OsAOC1, HB, CPM2,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2
44460	28514448	Xu G., Yuan M., Ai C., Liu L., Zhuang E., Karapetyan S., Wang S., Dong X.	uORF-mediated translation allows engineered plant disease resistance without fitness costs.	Nature	545(7655)	491-494	2017	HSFB1	HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1 
44461	28575747	Suriyasak C., Harano K., Tanamachi K., Matsuo K., Tamada A., Iwaya-Inoue M., Ishibashi Y.	Reactive oxygen species induced by heat stress during grain filling of rice (Oryza sativa L.) are involved in occurrence of grain chalkiness.	J. Plant Physiol.	216	52-57	2017		
44462	28716414	Lu M., Wang Z., Fu S., Yang G., Shi M., Lu Y., Wang X., Xia J.	Functional characterization of the SbNrat1 gene in sorghum.	Plant Sci.	262	18-23	2017		
44463	28527335	Kim S., Lee S.B., Han C.S., Lim M.N., Lee S.E., Yoon I.S., Hwang Y.S.	Dissection of cis-regulatory element architecture of the rice oleosin gene promoters to assess abscisic acid responsiveness in suspension-cultured rice cells.	J. Plant Physiol.	215	20-29	2017		
44464	28495893	Xu Y., Sechet J., Wu Y., Fu Y., Zhu L., Li J., Zhang Y., Gineau E., Gaertner C., Zhou J., Fan X., Liu Y., Zhou L., Mouille G., Lin X.	Rice Sucrose Partitioning Mediated by a Putative Pectin Methyltransferase and Homogalacturonan Methylesterification.	Plant Physiol.	174(3)	1595-1608	2017	TSD2 	OsTSD2, OsQUA2, QUA2 
44465	28527337	Park S.I., Kim Y.S., Kim J.J., Mok J.E., Kim Y.H., Park H.M., Kim I.S., Yoon H.S.	Improved stress tolerance and productivity in transgenic rice plants constitutively expressing the Oryza sativa glutathione synthetase OsGS under paddy field conditions.	J. Plant Physiol.	215	39-47	2017		
44466	28531235	Zeng F., Biligetu B., Coulman B., Schellenberg M.P., Fu Y.B.	RNA-Seq analysis of gene expression for floral development in crested wheatgrass (Agropyron cristatum L.).	PLoS ONE	12(5)	e0177417	2017		
44467	28589142	Cui H., Wu Q., Zhu B.	Specific-Locus Amplified Fragment Sequencing Reveals Spontaneous Single-Nucleotide Mutations in Rice OsMsh6 Mutants.	Biomed Res Int	2017	4816973	2017	_	OsMsh6, Msh6
44468	28500268	Mao C., Lu S., Lv B., Zhang B., Shen J., He J., Luo L., Xi D., Chen X., Ming F.	A Rice NAC Transcription Factor Promotes leaf senescence via ABA Biosynthesis.	Plant Physiol.	174(3)	1747-1763	2017	NCED1,TDC2,SPL28,_,_,SGR,PHYB,NYC3,TDC1,NYC1,WRKY90,NAC5,SWEET5,RCCR2,ABA8OX1,NAC2,NOL,CZOGT1,ABA1,PSE1	OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsTDC2,,REP-1, OsSAG12-1, SAG12-1, OsEnS-21,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,sgr(t), sgr, OsSGR, OsSgr,phyB, PHYB1, OsPHYB, OsphyB,nyc3, OsNYC3, PPH,OsTDC, TDC2, OsTDC1,nyc1, OsNYC1,OsWRKY90,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,OsSWEET5,OsRCCR2, OsRCCR1, RCCR1,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,nol, NOL1, OsNOL, OsNOL1,OscZOGT1, cZOGT1,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsPSE1, OsPLL1, PLL1
44469	28340032	Tang Z., Chen Y., Chen F., Ji Y., Zhao F.J.	OsPTR7 (OsNPF8.1), a Putative Peptide Transporter in Rice, is Involved in Dimethylarsenate Accumulation in Rice Grain.	Plant Cell Physiol.	58(5)	904-913	2017	PTR7	OsPTR7, OsNPF8.1, NPF8.1 
44470	28204489	Tanaka J., Fukamizo T., Ohnuma T.	Enzymatic properties of a GH19 chitinase isolated from rice lacking a major loop structure involved in chitin binding.	Glycobiology	27(5)	477-485	2017	CHT8	Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14
44471	28330558	Ahmed S., Ariyaratne M., Patel J., Howard A.E., Kalinoski A., Phuntumart V., Morris P.F.	Altered expression of polyamine transporters reveals a role for spermidine in the timing of flowering and other developmental response pathways.	Plant Sci.	258	146-155	2017	PUT3,PUT1	OsPUT3, OsPUT3.1, OsPAR1, OsLAT5 ,OsPUT1, PUT, OsLAT1 
44472	28611803	Wu L., Zhang W., Ding Y., Zhang J., Cambula E.D., Weng F., Liu Z., Ding C., Tang S., Chen L., Wang S., Li G.	Shading Contributes to the Reduction of Stem Mechanical Strength by Decreasing Cell Wall Synthesis in Japonica Rice (Oryza sativa L.).	Front Plant Sci	8	881	2017	CESA3,GH2,ROMT9,_,BC6,CESA1,CESA8,BC7,PAL1,CCR18,CESA7	OsCesA3, OsCESA3, OS_CESA03,gh2, CAD2, CAD, OsCAD2, GH2 ,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,OsOMT26, ROMT-15, ROMT15, COA20, OsCCoAOMT, CCoAOMT,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsCCR, CCR, OsCCR18,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7
44473	28371895	Gao W., Lu L., Qiu W., Wang C., Shou H.	OsPAP26 Encodes a Major Purple Acid Phosphatase and Regulates Phosphate Remobilization in Rice.	Plant Cell Physiol.	58(5)	885-892	2017	PAP26	OsPAP26
44474	28620402	Li R.Q., Jiang M., Liu Y.H., Zheng Y.C., Huang J.Z., Wu J.M., Shu Q.Y.	The xantha Marker Trait Is Associated with Altered Tetrapyrrole Biosynthesis and Deregulated Transcription of PhANGs in Rice.	Front Plant Sci	8	901	2017	YLC2,SE13,SIG6,SIG5,_,SE5,_,_	OsHO2, HO2, OsHO-2, HO-2,Se13, OsHY2, OsGUN3, GUN3, PS13,OsSIG6, OsSig6,OsSIG5, OsSig5, Os Sig5,GUN4, OsGUN4,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,FC2, OsGUN6-2, GUN6-2 ,FC1, OsGUN6-1, GUN6-1
44475	28559550	Liang X., Chen X., Li C., Fan J., Guo Z.	Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice.	Sci Rep	7(1)	2474	2017	_,HPL3,_,WRKY62,WRKY76,_,AOS2,AIM1,AOC	OsTPS31, TPS31, OsSTPS, TPS46, tps46, OsTPS46, SSBis039, OsTPS10, TPS10,OsHPL3, CYP74B2,OsTPS29, TPS29, OsCAS, CAS, OsTPS3, TPS3,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,ICS1, OsICS1, OsICS, ICS,OsAOS2, CYP74A2, OsAOS, OsAOS1,MFP, OsAIM, OsCHD, CHD,OsAOC, AOC1, OsAOC1, HB, CPM2
44476	28502056	Feng H., Li B., Zhi Y., Chen J., Li R., Xia X., Xu G., Fan X.	Overexpression of the nitrate transporter, OsNRT2.3b, improves rice phosphorus uptake and translocation.	Plant Cell Rep.	36(8)	1287-1296	2017	NRT2.3,PT1,PHR2,PT8,PT2	OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsPHR2, Os-PHR2,OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPT2, PTH1-2, OsPht1;2, PHT1;2
44477	28505352	Chen Y., Sun S.K., Tang Z., Liu G., Moore K.L., Maathuis F.J.M., Miller A.J., McGrath S.P., Zhao F.J.	The Nodulin 26-like intrinsic membrane protein OsNIP3;2 is involved in arsenite uptake by lateral roots in rice.	J. Exp. Bot.	68(11)	3007-3016	2017	NIP3;2	OsNIP3;2, NIP3-2, OsNIP3.2, NIP3.2
44478	28472292	Bund? M., Coca M.	Calcium-dependent protein kinase OsCPK10 mediates both drought tolerance and blast disease resistance in rice plants.	J. Exp. Bot.	68(11)	2963-2975	2017	CATA,CDPK10	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsCDPK10, OsCPK10, CPK10
44479	28576844	Li G., Jain R., Chern M., Pham N.T., Martin J.A., Wei T., Schackwitz W.S., Lipzen A.M., Duong P.Q., Jones K.C., Jiang L., Ruan D., Bauer D., Peng Y., Barry K.W., Schmutz J., Ronald P.C.	The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies.	Plant Cell	29(6)	1218-1231	2017		
44480	28177831	Yang X., Nong B., Xia X., Zhang Z., Zeng Y., Liu K., Deng G., Li D.	Rapid identification of a new gene influencing low amylose content in rice landraces (Oryza sativa L.) using genome-wide association study with specific-locus amplified fragment sequencing.	Genome	60(6)	465-472	2017		
44481	28607067	Zhou F., Wang C.Y., Gutensohn M., Jiang L., Zhang P., Zhang D., Dudareva N., Lu S.	A recruiting protein of geranylgeranyl diphosphate synthase controls metabolic flux toward chlorophyll biosynthesis in rice.	Proc. Natl. Acad. Sci. U.S.A.	114(26)	6866-6871	2017	GGPPS2,GGPPS1,LYL1,_,FGL,YGL1,GA3OX1	OsGGPPS2, OsGRP, GRP ,OsGGPPS1,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P,OsLIL3, LIL3,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsGA3ox1, GA3ox1, OsGA3OX1
44482	28626465	Zhong S., Mahmood K., Bi Y.M., Rothstein S.J., Ranathunge K.	Altered Expression of OsNLA1 Modulates Pi Accumulation in Rice (Oryza sativa L.) Plants.	Front Plant Sci	8	928	2017	LTN1,_	LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,OsRFPHC-13, OsNLA, NAL, OsNLA1, NAL1
44483	28702040	Wang T., Li C., Wu Z., Jia Y., Wang H., Sun S., Mao C., Wang X.	Abscisic Acid Regulates Auxin Homeostasis in Rice Root Tips to Promote root hair Elongation.	Front Plant Sci	8	1121	2017	PIN10A,_,_,YUCCA4,LRA1,SAPK10,YUCCA1,_	PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsAMI2, AMI2, OsAMI1, AMI1,OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2,OsYUCCA4, OsYUC4, YUC4,OsPIN2, PIN2, OsLRA1,OsSAPK10,OsYUCCA1, OsYUC1,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1
44484	28659944	Lou D., Wang H., Liang G., Yu D.	OsSAPK2 Confers Abscisic Acid Sensitivity and Tolerance to Drought Stress in Rice.	Front Plant Sci	8	993	2017	RAB16A,BZIP23,SAPK2,LEA3-1,SOD4,APX2,P5CS,ABI5,SLAC7,SLAC1,CATC,SODCC1,RAB16B	Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsSAPK2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsSLAC7,OsSLAC1,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,rab21, OsLEA28, OsRAB16D, OsRAB16b
44485	28647924	Gho Y.S., Park S.A., Kim S.R., Chandran A.K.N., An G., Jung K.H.	Comparative Expression Analysis of Rice and Arabidopsis Peroxiredoxin Genes Suggests Conserved or Diversified Roles Between the Two Species and Leads to the Identification of Tandemly Duplicated Rice Peroxiredoxin Genes Differentially Expressed in Seeds.	Rice (N Y)	10(1)	30	2017	1CYSPRXB,2CYSPRXB,SLG,PRXIIE2,PRXIIF,PRXQ,PRXIIE1,_,HSP82A,EPSPS,_,1CYSPRXA,TRXH,CDPK30,PRXIIC,PRXIIE3,TRXH4	Os1-Cys Prx B, 1-Cys Prx B, Os1-CysPrxB, 1-CysPrxB,Os2-Cys PrxB, 2-Cys PrxB,slg, Rurm1, Urm1,Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2,OsPrxII F, PrxII F, OsPrxIIF, PrxIIF,OsPrx Q, Prx Q, OsPrxQ, PrxQ,OsPrxII E1, PrxII E1, OsPrxIIE1, PrxIIE1,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2,OsHSP82A, hsp82A, HSP90, OsHSP81, HSP81,EPSPs,OsS5a, S5a, OsRpn10, Rpn10,Os1-CysPrxA, 1-CysPrxA,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsCDPK30, OsCPK30,OsPrxII C, PrxII C, OsPrxIIC, PrxIIC,OsPrxII E3, PrxII E3, OsPrxIIE3, PrxIIE3,OsTRXh4, OsTrx10, Os3, OsTrxh3
44486	28574161	Huang P., Yoshida H., Yano K., Kinoshita S., Kawai K., Koketsu E., Hattori M., Takehara S., Huang J., Hirano K., Ordonio R.L., Matsuoka M., Ueguchi-Tanaka M.	OsIDD2, a zinc finger and INDETERMINATE DOMAIN protein, regulates secondary cell wall formation.	J Integr Plant Biol			2017	BC7,GH2,RSUS5,CAD3,CESA7,BC6,_	OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,gh2, CAD2, CAD, OsCAD2, GH2 ,SUS5, SS5, OsScS5, RSs5, RSus5, OsSUS5,OsCAD3,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsIDD2, IDD2
44487	28637831	Pandey B.K., Mehra P., Verma L., Bhadouria J., Giri J.	OsHAD1, a Haloacid Dehalogenase-Like APase, Enhances Phosphate Accumulation.	Plant Physiol.	174(4)	2316-2332	2017	PT8,PT6,PT2,PT4,PT1,PHR2,PT10,_,HAD1,_,NDPK3	OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsPHR2, Os-PHR2,OsPT10, PHT1-10, OsPht1;10,,OsHAD1,OsACP1, ACP1,OsNDPK3
44488	28626008	Nguyen T.H., Huang S., Meynard D., Chaine C., Michel R., Roelfsema M.R.G., Guiderdoni E., Sentenac H., V?ry AA.	A Dual Role for the OsK5.2 Ion Channel in Stomatal Movements and K(+) Loading into Xylem Sap.	Plant Physiol.	174(4)	2409-2418	2017	GORK ,SKOR 	OsGORK, OsK5.2, K5.2,OsSKOR, OsK5.1, K5.1
44489	28680425	Wang J., Shi H., Zhou L., Peng C., Liu D., Zhou X., Wu W., Yin J., Qin H., Ma W., He M., Li W., Wang J., Li S., Chen X.	OsBSK1-2, an Orthologous of AtBSK1, Is Involved in Rice Immunity.	Front Plant Sci	8	908	2017	RLCK308,MAS,RLCK304,RLCK173,RLCK98,PR10B,RLCK119	OsRLCK308, OsBSK2, BSK2,OsMAS, MAS1, OsMAS1, OsMAS/SDR110C-MS1, SDR110C-MS1 ,OsRLCK304, OsBSK1-2, BSK1-2,OsRLCK173, OsBSK3, BSK3,OsRLCK98, OsBSK1, BSK1, OsBSK1-1, BSK1-1,RPR10b, PR-10b, PR10b, PBZ1, PBZ-1, OsPBZc, OsPR10b ,OsRLCK119, OsBSK4, BSK4
44490	28631167	Andr?s-Border?a A., Andr?s F., Garcia-Molina A., Perea-Garc?a A., Domingo C., Puig S., Pe?arrubia L.	Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).	Plant Mol. Biol.			2017	CCH,NAS1,_,_,_,NAAT1,NAS2,MT1F,COPT7,SODCC2,SODCC1,SOD4,_,MTI4B,FER2,_,SODB,FSD1.1 ,COPT1	OsATX1, CCH, ATX1,OsNAS1,OsHRZ1, HRZ1,OsRFPH2-24, OsHRZ2, HRZ2,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAAT1,OsNAS2,OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,OsCOPT7,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3,OsCDGSH, CDGSH,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc ,OsFER2, OsFer2,Fd1, OsFd1, ADI1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1,COPT1, OsCOPT1
44491	28649255	Shi F., Dong Y., Zhang Y., Yang X., Qiu D.	Overexpression of the PeaT1 Elicitor Gene from Alternaria tenuissima Improves drought tolerance in Rice Plants via Interaction with a Myo-Inositol Oxygenase.	Front Plant Sci	8	970	2017	SKIPA,_,MIOX,TPKB,CDPK9,EREBP1,_,DST,_	OsSKIPa, OsSKIP, SKIP,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsMIOX,TPKb, OsTPKb,OsCDPK9, OsCPK9, CPK9,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsAM1, AM1,OsDST,LP2, OsLP2
44492	28474399	Guo H., Zhou H., Zhang J., Guan W., Xu S., Shen W., Xu G., Xie Y., Foyer C.H.	l-cysteine desulfhydrase-related H2 S production is involved in OsSE5-promoted ammonium tolerance in roots of Oryza sativa.	Plant Cell Environ.	40(9)	1777-1790	2017	SE5	Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1
44493	28574641	Fan C., Li Y., Hu Z., Hu H., Wang G., Li A., Wang Y., Tu Y., Xia T., Peng L., Feng S.	Ectopic expression of a novel OsExtensin-like gene consistently enhances plant lodging resistance by regulating cell elongation and cell wall thickening in rice.	Plant Biotechnol. J.			2017	_,_,_,_,_,_,_,_,_,_,BUI1,_,_,_,_,_,_,_,_,_,_,RLCK175,_,_,_,_,_,_	,,OsFH13, FH13,OsEXTL, EXTL ,OsFH6, FH6,,,,,,BUI1, FH5, FH5/BUI1, RMD, OsFH5, FH5/RMD ,,,,,,,,OsSTA174, RHS10,,,OsRLCK175,,,,,SIP34,RHS10
44494	28694815	Chang Y., Nguyen B.H., Xie Y., Xiao B., Tang N., Zhu W., Mou T., Xiong L.	Co-overexpression of the Constitutively Active Form of OsbZIP46 and ABA-Activated Protein Kinase SAPK6 Improves Drought and Temperature Stress Resistance in Rice.	Front Plant Sci	8	1102	2017	SAPK6,PDR22,HSP50.2,_,HSP58.7,_,RAB16B,RAD51B,_,RAB16A,BZIP46	OsSAPK6, OSRK1,OsABCG49, OsPDR22, OsABCG49_1, OsABCG49_2,OsHsp50.2, OsHSP50.2,OsPP2C16, PP2C16, OsPP26,OsHsp58.7, OsHSP58.7, OsISC25,,rab21, OsLEA28, OsRAB16D, OsRAB16b,OsRAD51B, OsRad51B,OsPP2C42, PP2C42, OsPP67,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46
44495	28585692	Huang X., Peng X., Sun M.X.	OsGCD1 is essential for rice fertility and required for embryo dorsal-ventral pattern formation and endosperm development.	New Phytol.	215(3)	1039-1058	2017	GCD1,MAPK6,OSH1,AMY1A,GE1,SCR,PNH1,_	OsGCD1,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,Amy1A/C*(RAmy1A/C), alpha Amy7, AMY1.1, Amy1A, RAmy1A/C, Amy1A/C*, Amy1, Amy1A_C, OsAmy1A, alphaAmy7-C, RAmy1A,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES,OsSCR, OsSCR2, SCR2, OsGRAS-51, OsGRAS51, GRAS-51, GRAS51,OsPNH1,HAZ1
44496	28631168	Chen H.C., Hsieh-Feng V., Liao P.C., Cheng W.H., Liu L.Y., Yang Y.W., Lai M.H., Chang M.C.	The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.	Plant Mol. Biol.	94(4-5)	531-548	2017	_,_,_,_,_,_,_,_,PTF1,PIL13,_,PIL11,_	OsbHLH061,OsbHLH110,OsbHLH031,OsbHLH064,OsbHLH024,OsbHLH065, OsbHLH65,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,OsbHLH035, bHLH035, OsbHLH35, bHLH35,OsPTF1, OsbHLH096,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7,OsbHLH092,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsbHLH068, bHLH068, bHLH68
44497	28676446	Yang H., Song J., Yue L., Mo X., Song J., Mo B.	Identification and expression profiling of Oryza sativa nucleotidyl transferase protein (NTP) genes under various stress conditions.	Gene			2017	NTP7,NTP11,NTP9,NTP8,NTP5,NTP3,NTP1,NTP2,NTP10,NTP6,NTP4,NTP12,NTP13	OsNTP7,OsNTP11,OsNTP9,OsNTP8,OsNTP5,OsNTP3,OsNTP1,OsNTP2,OsNTP10,OsNTP6,OsNTP4,OsNTP12,OsNTP13
44498	28696221	Hu Q., Li Y., Wang H., Shen Y., Zhang C., Du G., Tang D., Cheng Z.	Meiotic Chromosome Association 1 Interacts with TOP3alpha and Regulates Meiotic Recombination in Rice.	Plant Cell	29(7)	1697-1708	2017	_,MEICA1,_,_,_	MSH7,,TOP3, TOP3alpha,OsMSH5, MSH5,HEI10, HEI10A, HEI10B, OsHEI10
44499	28700950	Ahmed M.M.S., Ji W., Wang M., Bian S., Xu M., Wang W., Zhang J., Xu Z., Yu M., Liu Q., Zhang C., Zhang H., Tang S., Gu M., Yu H.	Transcriptional changes of rice in response to rice black-streaked dwarf virus.	Gene			2017	ABA8OX3,TIFY10A,CKX4,RCCR1,C3H24,ABA1,YGL1,SCS1,CDPK19,_,WAK32,YGL10	OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,OsRCCR1, OsRCCR, RCCR,OsC3H24, OsTZF3, TZF3, OsCCCH-Zn-8, CCCH-Zn-8,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsSCS1,OsCDPK19, OsCPK19, OsCDPK2, CPK2, CDPK2,R2R3-MYB,OsWAK32,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
44500	28698160	Qin J., Tang Z., Ma X., Meng Y.	Investigating the regulatory roles of the microRNAs and the Argonaute 1-enriched small RNAs in plant metabolism.	Gene			2017	GINT2,_,_,AAO2,RDR2,_,_,SODCC2,AGO1C,_,_,_,_,DCL1,BSR1,WAK55,SSI,STN7,_,_,_,_,_,_,_,_	OsGINT2,,,OsAAO2, L-APX,OsRDR2,,OsWee1, Wee1 ,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,OsAGO1c, OsAGO1, AGO1, AGO1c,OsATPS, ATPS, OsaATPS, PAPSS,CSB,OsPFK01, PFK01, PFK1, OsPFK1,,Dcl1, OsDCL1, osDCL1, Os-DCL1,OsRLCK278, RLCK278,OsWAK55,OsSSI, SSS 1, SSS1, SS1,OsSTN7,,OsSTRL21, STRL21,,,,,OsSERL2, SERL2, SERK1, OsBAK1-7, BAK1-7,
44501	28737678	Esch L., Schaffrath U.	An Update on Jacalin-Like Lectins and Their Role in Plant Defense.	Int J Mol Sci	18(7)		2017	_,_	OsYchF1, YchF1, OsPM8ATP ,OsJAC1, JAC1
44502	28716105	Wang Q., Zang Y., Zhou X., Xiao W.	Characterization of four rice Uev1 genes required for Lys63-linked polyubiquitination and distinct functions.	BMC Plant Biol.	17(1)	126	2017	_,_,_,_,_	MMS2, OsUEV1C, UEV1C,OsUbc13, Ubc13, OsUBC47, UBC47,OsCROC-1, CROC-1, CROC1, OsCROC1, OsUEV1B, UEV1B,OsUEV1A, UEV1A,OsUEV1D, UEV1D
44503	28798768	Yu Y., Li Q.F., Zhang J.P., Zhang F., Zhou Y.F., Feng Y.Z., Chen Y.Q., Zhang Y.C.	laccase-13 Regulates Seed Setting Rate by Affecting Hydrogen Peroxide Dynamics and Mitochondrial Integrity in Rice.	Front Plant Sci	8	1324	2017	MIR397A,LAC15	miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,OsLAC, OsLAC15, OsLAC13, LAC13 
44504	28715430	Jiang S., Sun S., Bai L., Ding G., Wang T., Xia T., Jiang H., Zhang X., Zhang F.	Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield.	PLoS ONE	12(7)	e0181037	2017	HD3B,APO1,MADS56,SSIIC,_,_,WX1,EP3,SBE3,GN1A,EHD3,GW8,SSIVA,SSIIIB,ALK	Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,apo1(t), apo1, SCM2, SCM2/APO1, OsFbox321, Os_F0393,OsMADS56, FDRMADS8, RMADS214,OsSSIIc, SSII-1, SSII1 ,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2,OsLF, LF, OsbHLH119,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,Ehd3,SPL16, OsSPL16, SLP1, qGW8,OsSSIVa, SSIV-1, OsSSIV-1,OsSSIIIb. SSIII-1,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a
44505	28621830	Hayashi S., Kuramata M., Abe T., Takagi H., Ozawa K., Ishikawa S.	phytochelatin synthase OsPCS1 plays a crucial role in reducing arsenic levels in rice grains.	Plant J.	91(5)	840-848	2017	MRP1,_,PCS1	OsABCC1, ABCC1, OsABCC1-1, OsABCC1-2, OsMRP1,OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full,OsPCS1, OsPCS2, PCS2 
44506	28706198	Hu Q., Lin C., Guan Y., Sheteiwy M.S., Hu W., Hu J.	Inhibitory effect of eugenol on seed germination and pre-harvest sprouting of hybrid rice (Oryza sativa L.).	Sci Rep	7(1)	5295	2017	NCED2,ABA8OX2	OsNCED2, OsNced2, OsCCD4b, CCD4b,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2
44507	28756251	Xu D., Cao H., Fang W., Pan J., Chen J., Zhang J., Shen W.	Linking hydrogen-enhanced rice aluminum tolerance with the reestablishment of GA/ABA balance and miRNA-modulated gene expression: A case study on germination.	Ecotoxicol. Environ. Saf.	145	303-312	2017		
44508	28769958	Jang S., Li H.Y.	Oryza sativa BRASSINOSTEROID UPREGULATED1 LIKE1 Induces the Expression of a Gene Encoding a Small Leucine-Rich-Repeat Protein to Positively Regulate Lamina Inclination and grain size.in Rice.	Front Plant Sci	8	1253	2017	EXPA1,EXPA4,ERF96,_,XTH2,ILI5,WRKY24,EXPA2,EXPA3,XTH9	OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2 ,OsBDG1, BDG1 ,OsXTH2, XTR1, OsXTR1,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsWRKY24,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXP3 (Os-EXP3), EXPA3, OsEXP3, Os-EXP3, OsaEXPa1.18, RiExD, Os-EXPA3, OsEXPA3,OsXTH9, OsXET9, XTH1, OsXTH1
44509	28751900	Kim E.H., Lee D.W., Lee K.R., Jung S.J., Jeon J.S., Kim H.U.	Conserved Function of Fibrillin5 in the Plastoquinone-9 Biosynthetic Pathway in Arabidopsis and Rice.	Front Plant Sci	8	1197	2017	_,FBN5,_,_	OsSPS2, SPS2,OsFBN5,OsSPS3, SPS3,OsSPS1, SPS1
44510	28761138	Zou T., Li S., Liu M., Wang T., Xiao Q., Chen D., Li Q., Liang Y., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Wang L., Li P.	An atypical strictosidine synthase, OsSTRL2, plays key roles in anther development and pollen wall formation in rice.	Sci Rep	7(1)	6863	2017	TGW6,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	tgw6, OsSTRL7, STRL7,OsSTRL13, STRL13,OsSTRL20, STRL20,OsSTRL10, STRL10,OsSTRL17, STRL17,OsSTRL15, STRL15,OsSTRL12, STRL12,OsSTRL1, STRL1,OsSTRL18, STRL18,OsSTRL6, STRL6,OsSTRL4, STRL4,OsSTRL5, STRL5,OsSTRL3, STRL3,OsSTRL9, STRL9,OsSTRL2, STRL2,OsSTRL21, STRL21,OsSTRL19, STRL19,OsSTRL16, STRL16,OsSTRL11, STRL11,OsSTRL14, STRL14,OsSTRL8, STRL8
44511	28690154	Yin X., Cui Y., Wang M., Xia X.	Overexpression of a novel MYB-related transcription factor, OsMYBR1, confers improved drought tolerance and decreased ABA sensitivity in rice.	Biochem. Biophys. Res. Commun.	490(4)	1355-1361	2017	LEA3-1,RAB16A,P5CS,_,_	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsProT, ProT, OsProT2, ProT2,LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35
44512	28700714	Liu W., Ghouri F., Yu H., Li X., Yu S., Shahid M.Q., Liu X.	Genome wide re-sequencing of newly developed Rice Lines from common wild rice (Oryza rufipogon Griff.) for the identification of NBS-LRR genes.	PLoS ONE	12(7)	e0180662	2017	CC1,_,HSP90	OsCc1, OsCc-1,,OsHsp90, rHSP90, OsHSP90, GRP94, OsGRP94
44513	28708858	Xu Y., Yang J., Wang Y., Wang J., Yu Y., Long Y., Wang Y., Zhang H., Ren Y., Chen J., Wang Y., Zhang X., Guo X., Wu F., Zhu S., Lin Q., Jiang L., Wu C., Wang H., Wan J.	OsCNGC13 promotes seed-setting rate by facilitating pollen tube growth in stylar tissues.	PLoS Genet.	13(7)	e1006906	2017	CNGC11	OsCNGC11, OsCNGC13, CNGC13, SSS1-D 
44514	28730411	Lee Y., Choi M.S., Lee G., Jang S., Yoon M.R., Kim B., Piao R., Woo M.O., Chin J.H., Koh H.J.	sugary endosperm is Modulated by Starch branching enzyme IIa in Rice (Oryza sativa L.).	Rice (N Y)	10(1)	33	2017	ISA1,SBE4	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,RBE4, OsSBE4, BEIIa, QEIIb, BEIIA, OsBEIIa
44515	28708834	Zhang Y., Yu C., Lin J., Liu J., Liu B., Wang J., Huang A., Li H., Zhao T.	OsMPH1 regulates plant height and improves grain yield in rice.	PLoS ONE	12(7)	e0180825	2017	_,WAK45,_,COMTL5,_,_,_,_,_,_,KAO,_,CAD6,XTH15	,OsWAK45, OsRLCK143, RLCK143,,OsCOMTL5,OsMPH1, MPH1, OsMYB45, MYB45,,,,,,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3,OsCAD6,OsXTH15
44516	28676963	Yang X., Chen L., He J., Yu W.	Knocking out of carotenoid catabolic genes in rice fails to boost carotenoid accumulation, but reveals a mutation in strigolactone biosynthesis.	Plant Cell Rep.			2017	D17	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17
44517	28751317	Zhang H., Li Y., Yao X., Liang G., Yu D.	POSITIVE REGULATOR OF IRON HOMEOSTASIS1, OsPRI1, Facilitates Iron Homeostasis.	Plant Physiol.	175(1)	543-554	2017	IRT2,IRT1,_,NAS2,YSL15,NAS1,_,_,YSL2	OsIRT2, OsIRT1,OsIRT1,OsbHLH060, bHLH060, bHLH60, OsPRI1, PRI1,OsNAS2,OsYSL15, OsYs7,OsNAS1,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsYSL2, Os-YSL2, OsYs6 
44518	28726715	Zhang R.X., Qin L.J., Zhao D.G.	Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced cold tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities.	Genes (Basel)	8(7)		2017	_	OsIMP-1, IMP-1, OsIMP, IMP
44519	28818372	Zhang Z., Zhang F., Cheng Z.J., Liu L.L., Lin Q.B., Wu F.Q., Zhang H., Wang J.L., Wang J., Guo X.P., Zhang X., Lei C.L., Zhao Z.C., Zhu S.S., Wan J.M.	Functional characterization of rice CW-domain containing zinc finger proteins involved in histone recognition.	Plant Sci.	263	168-176	2017	CWZF5,CWZF3,CWZF6,CWZF7	OsCW-ZF5, CW-ZF5,OsCW-ZF3, CW-ZF3,OsCW-ZF6, CW-ZF6,OsCW-ZF7, CW-ZF7
44520	28747699	Sun T., Li S., Ren H.	OsFH15, a class I formin, interacts with microfilaments and microtubules to regulate grain size via affecting cell expansion in rice.	Sci Rep	7(1)	6538	2017	PRF2,_,PRF1	OsPRF2,OsFH15, FH15,OsPRF1
44521	28554475	Wu W., Zheng X.M., Chen D., Zhang Y., Ma W., Zhang H., Sun L., Yang Z., Zhao C., Zhan X., Shen X., Yu P., Fu Y., Zhu S., Cao L., Cheng S.	OsCOL16, encoding a CONSTANS-like protein, represses flowering by up-regulating Ghd7 expression in rice.	Plant Sci.	260	60-69	2017	RAP1B,EF1,RAP1A,RFT1,_,GHD7,HD3A	MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsBBX17, BBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
44522	28698641	Cai L., Cao Y., Xu Z., Ma W., Zakria M., Zou L., Cheng Z., Chen G.	A Transcription Activator-Like Effector Tal7 of Xanthomonas oryzae pv. oryzicola Activates rice gene Os09g29100 to Suppress Rice Immunity.	Sci Rep	7(1)	5089	2017	CYCD4;1,XA7,GATA25	CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,Xa7,OsGATA25
44523	28775727	Park H.J., Lee A., Lee S.S., An D.J., Moon K.B., Ahn J.C., Kim H.S., Cho H.S.	Overexpression of Golgi Protein CYP21-4s Improves Crop Productivity in Potato and Rice by Increasing the Abundance of Mannosidic Glycoproteins.	Front Plant Sci	8	1250	2017	CYP21-4	OsCYP21-4, OsCYP-19, OsCYP21-2a, OsCYP21-2b, OsCYP21-2c
44524	28797946	Wytynck P., Roug? P., Van Damme EJM.	Genome-wide screening of Oryza sativa ssp. japonica and indica reveals a complex family of proteins with ribosome-inactivating protein domains.	Phytochemistry	143	87-97	2017		
44525	28839043	Gao N., Martini J.W.R., Zhang Z., Yuan X., Zhang H., Simianer H., Li J.	Incorporating Gene Annotation into Genomic Prediction of Complex Phenotypes.	Genetics			2017		
44526	28813631	Cheng A., Ismail I., Osman M., Hashim H., Mohd Zainual NS.	Rapid and targeted introgression of fgr gene through marker-assisted backcrossing in rice (Oryza sativa L.).	Genome			2017		
44527	28847935	Zhang T., Li Y., Ma L., Sang X., Ling Y., Wang Y., Yu P., Zhuang H., Huang J., Wang N., Zhao F., Zhang C., Yang Z., Fang L., He G.	LATERAL FLORET 1 induced the three-florets spikelet in rice.	Proc. Natl. Acad. Sci. U.S.A.			2017	RAP1A,OSH1,MFO1, LF1	OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsMADS6, MADS6, OsMFO1,HOX10, Oshox10, OsHox10, OsHB1, HB1, OSHB1, LF1/OsHB1 
44528	28839042	Mei W., Boatwright L., Feng G., Schnable J.C., Barbazuk W.B.	Evolutionarily Conserved Alternative Splicing?Across Monocots.	Genetics			2017		
44529	28824674	Fang Z., Bai G., Huang W., Wang Z., Wang X., Zhang M.	The Rice peptide transporter OsNPF7.3 Is Induced by Organic Nitrogen, and Contributes to Nitrogen Allocation and grain yield.	Front Plant Sci	8	1338	2017	PTR6	OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 
44530	28856519	Tang J., Zhang W., Wen K., Chen G., Sun J., Tian Y., Tang W., Yu J., An H., Wu T., Kong F., Terzaghi W., Wang C., Wan J.	OsPPR6, a pentatricopeptide repeat protein involved in editing and splicing chloroplast RNA, is required for chloroplast biogenesis in rice.	Plant Mol. Biol.			2017	_,PPR6	ORF170, ycf3, IRF170,OsPPR6
44531	28857222	Yoshida Y., Miyamoto K., Yamane H., Nishizawa Y., Minami E., Nojiri H., Okada K.	OsTGAP1 is responsible for JA-inducible diterpenoid phytoalexin biosynthesis in rice roots with biological impacts on allelopathic interaction.	Physiol Plant			2017	KS7,DXS3,KS4,BZIP37	OsKS7, KS7, KSL7, OsKSL7, DTC1, OsDTC1, OsKS3, OsDTC1/OsKS7, OsTPS6,OsDXS, OsDXS3, dxs3,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsTGAP1, TGAP1, OsbZIP37
44532	28699078	Auiyawong B., Narawongsanont R., Tantitadapitak C.	Characterization of AKR4C15, a Novel Member of Aldo-keto reductase, in Comparison with Other Rice AKR(s).	Protein J.	36(4)	257-269	2017	AKR2,ARK4,ARK1,_,AKR3	OsAKR2, AKR4C14,OsARK4,OsARK1,AKR4C15,OsAKR3, OsALR1, ALR1 
44533	28846681	Ganie S.A., Pani D.R., Mondal T.K.	Genome-wide analysis of DUF221 domain-containing gene family in Oryza species and identification of its salinity stress-responsive members in rice.	PLoS ONE	12(8)	e0182469	2017	MIR818A,OSCA1.2,MIR818D,OSCA2.1,MIR818B,MIR818E,OSCA1.1,OSCA2.3,OSCA1.4,OSCA2.4,OSCA2.2,ERD4,MIR6248,MIR1436,OSCA1.3,MIR818C,OSCA2.5	miR818a, osa-miR818a, osa-MIR818a,OsOSCA1.2, OsIOSCA1.2, OsDDP6, DDP6, OsDDP6.1, OsDDP6.2,miR818d, osa-miR818d, osa-MIR818d,OsOSCA2.1, OsIOSCA2.1, OsDDP10, DDP10, OsDDP10.1,miR818b, osa-miR818b, osa-MIR818b,miR818e, osa-miR818e, osa-MIR818e,OsOSCA1.1, OsIOSCA1.1, OsDDP1, DDP1, OsDDP1.1, OsDDP1.2, OsDDP1.3, OsDDP1.4,OsOSCA2.3, OsIOSCA2.3, OsDDP4, DDP4, OsDDP4.1,OsOSCA1.4 , OsIOSCA1.4, OsDDP8, DDP8, OsDDP8.1, OsDDP8.2,OsOSCA2.4, OsIOSCA2.4, OsDDP9, DDP9, OsDDP9.1,OsOSCA2.2, OsIOSCA2.2, OsDDP3, DDP3, OsDDP3.1, OsDDP3.2,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,miR6248, osa-miR6248, osa-MIR6248,miR1436, osa-miR1436, osa-MIR1436,OsSTA149, OsOSCA1.3, OsIOSCA1.3, OsDDP5, DDP5, OsDDP5.1,miR818c, osa-miR818c, osa-MIR818c,OsEnS-22, OsOSCA2.5, OsIOSCA2.5, OsDDP2, DDP2, OsDDP2.1, OsDDP2.2
44534	28801565	Karmakar S., Molla K.A., Das K., Sarkar S.N., Datta S.K., Datta K.	Dual gene expression cassette is superior than single gene cassette for enhancing sheath blight tolerance in transgenic rice.	Sci Rep	7(1)	7900	2017	PR1B,MAPK6,AOS2,NH1,CHT1,PR5,CHT3,PR10A	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsPR5, Pir2, PR-5, PR5-1,Cht3*, Cht3, Cht-3, CH6, OsChia1c, CHI7, OsCHI11, CHI11,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
44535	28827170	Han S., Min M.K., Lee S.Y., Lim C.W., Bhatnagar N., Lee Y., Shin D., Chung K.Y., Lee S.C., Kim B.G., Lee S.	Modulation of ABA signaling by altering VxGPhiL motif of PP2Cs in Oryza sativa.	Mol Plant			2017	_,_,_,_,SAPK10,_	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11,OsSAPK10,OsPP2C50, PP2C50, OsPP78, OsABIL3, ABIL3
44536	28766720	Hwang S.G., Chapagain S., Han A.R., Park Y.C., Park H.M., Kim Y.H., Jang C.S.	Molecular characterization of rice arsenic-induced RING Finger E3 ligase 2 (OsAIR2) and its heterogeneous overexpression in Arabidopsis thalaiana.	Physiol Plant			2017	_,_,_,_,_,_,_	OsRFP ,,OsRFP,OsRFP ,OsRFP, OsMAR1, MAR1,OsI57, I57, OsKAT1, KAT1,OsRFP, RFP, OsAIR2, AIR2 
44537	28775143	Burman N., Bhatnagar A., Khurana J.P.	OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.	Plant Physiol.			2017	ERF102,EXPA2,EXPA6,GID1,KO4,SLR1,NAC2,BZIP18,GA20OX1,GA2OX2,EXPA1,EXPA4,BC12,GID2,CPS2,BZIP1,BZIP48,SLRL1,PIL13	OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OsEXP2, OsEXP2(Os-EXP2), Os-EXP2, EXPA2, OsEXPA2, OsaEXPa1.23, RiExB, RiExC, Os-EXPA2,OsEXPA6, OsEXP6, osaEXPa1.24,gid1, OsGID1, Thl, Os GID1,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,OsbZIP18,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsGA2ox2, ga2ox 2, OsGA2ox-2,OsEXP1, EXPA1, OsEXPA1, OsaEXPa1.16, RiExA,OsEXP4 (Os-EXP4), OsEXPA4, OsEXP4, Os-EXP4, OsaEXPa1.22,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsbZIP01, OsbZIP1,OsbZIP48, OsHY5, HY5,OsSLRL1, OsGAI, OsSLRL, OsGRAS-1, OsGRAS1, GAI, SLRL, GRAS-1, GRAS1,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7
44538	28783252	Zhu X., Yu J., Shi J., Tohge T., Fernie A.R., Meir S., Aharoni A., Xu D., Zhang D., Liang W.	The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice.	J Integr Plant Biol			2017	LAP6,CYP704B2,ABCG15,_,CYP703A3,_,PKS10	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6,OsCYP704B2,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsMS2, MS2, OsDPW, DPW, DPW1,OsCYP703A3,OsACS9, ACS9, 4CL4, OsACOS12, ACOS12 ,OsPKS10, OsPKS2, PKS2
44539	28816596	Bakshi A., Moin M., Datla R., Kirti P.B.	Expression Profiling of Development Related Genes in Rice Plants Ectopically Expressing AtTOR.	Plant Signal Behav		0	2017	GL1,OSH15,FON1,BZIP12,FST ,GAMYB,FON2,MFO1,LHS1	gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsFON1, fon1, OsRLCK219, RLCK219,OsbZIP12, OsABF1, ABF1, OsOSE2, OSE2,OsMADS29, MADS29, OsFST,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,fon2, FON4, OsFON4, FON2/FON4, TG1,OsMADS6, MADS6, OsMFO1,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
44540	28839256	Manimaran P., Venkata Reddy S., Moin M., Raghurami Reddy M., Yugandhar P., Mohanraj S.S., Balachandran S.M., Kirti P.B.	Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.	Sci Rep	7(1)	9341	2017	P5CS,SALT,BZIP23,NAC6,SOS1,NHX1,LEA3-1,NFYC13	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsSOS1, OsNHA1,OsNHX1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsNF-YC13, NF-YC13 
44541	28811563	Kim S.W., Lee S.K., Jeong H.J., An G., Jeon J.S., Jung K.H.	Crosstalk between diurnal rhythm and water stress reveals an altered primary carbon flux into soluble sugars in drought-treated rice leaves.	Sci Rep	7(1)	8214	2017	BZIP23	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23
44542	28821952	Yu J., Zao W., He Q., Kim T.S., Park Y.J.	Genome-wide association study and gene set analysis for understanding candidate genes involved in salt tolerance at the rice seedling stage.	Mol. Genet. Genomics			2017	_,PP2A-1,_,GRX27,CCX3,ARF6B,_,_,ERF76,BZIP71,SWEET7C,_,BIF2,WAK128,CHX15,_,_,_,_,AGO3,SWEET12,_,WRKY3,_,_,_,_,_,NAL1,CDC48E,SAPK10,RLCK374,_	OscytME2, cytME2,OsPP2A-1, PP2A1, OsPP88,OsMTK, OsMTK1, MTK, MTK1,OsGRX27,OsCCX3, OsNCX11, NCX11,OsARF6b, OsARF25, ARF25,,OsProT3, ProT3,OsERF#076, OsERF076, OsERF76, AP2/EREBP#046, AP2/EREBP46,OsbZIP71,OsSWEET7c, SWEET7c,,bif2, Osbif2, OsBIF2, OsPID, PID,OsWAK128,OsCHX15,,,,OsGL1-8, GL1-8,OsAGO3,OsSWEET12,OsRab5A2, Rab5A2,OsWRKY3 ,OsCHB701, CHB701,,eIF-5A-2,,OsDjC48, DjC48,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4,OsCDC48E, OsCDC48-2, CDC48-2,OsSAPK10,OsRLCK374,
44543	28776570	Wang S., Wu K., Qian Q., Liu Q., Li Q., Pan Y., Ye Y., Liu X., Wang J., Zhang J., Li S., Wu Y., Fu X.	Non-canonical regulation of SPL transcription factors by a human OTUB1-like deubiquitinase defines a new plant type rice associated with higher grain yield.	Cell Res.	27(9)	1142-1156	2017	DEP1,_,WTG1,WFP	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsUbc13, Ubc13, OsUBC47, UBC47,OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
44544	28546542	Ishikawa S., Hayashi S., Abe T., Igura M., Kuramata M., Tanikawa H., Iino M., Saito T., Ono Y., Ishikawa T., Fujimura S., Goto A., Takagi H.	Low-cesium rice: mutation in OsSOS2 reduces radiocesium in rice grains.	Sci Rep	7(1)	2432	2017	LCS,CIPK24,_,HAK5,HKT1	OsHAK1, HAK1,OsCIPK24, SOS2, OsSOS2,OsAKT1, Os-AKT1, AKT1,OsHAK5, FCO13, OsFCO13,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1
44545	28540586	He W., Adachi S., Sage R.F., Ookawa T., Hirasawa T.	Leaf photosynthetic rate and mesophyll cell anatomy changes during ontogenesis in backcrossed indica?~?japonica rice inbred lines.	Photosyn. Res.			2017		
44546	28500410	Nisarga K.N., Vemanna R.S., Chandrashekar B.K., Rao H., Vennapusa A.R., Narasimaha A., Makarla U., Basavaiah M.R.	Erratum to: Aldo-ketoreductase 1 (AKR1) improves seed longevity in tobacco and rice by detoxifying reactive cytotoxic compounds generated during ageing.	Rice (N Y)	10(1)	19	2017		
44547	28512299	Niu L., Mannakkara A., Qiu L., Wang X., Hua H., Lei C., Jurat-Fuentes JL., Ma W.	Transgenic Bt rice lines producing Cry1Ac, Cry2Aa or Cry1Ca have no detrimental effects on Brown Planthopper and Pond Wolf Spider.	Sci Rep	7(1)	1940	2017		
44548	28542427	He J., Shao G., Wei X., Huang F., Sheng Z., Tang S., Hu P.	Fine mapping and candidate gene analysis of qTAC8, a major quantitative trait locus controlling tiller angle in rice (Oryza sativa L.).	PLoS ONE	12(5)	e0178177	2017	_,SPK,LAZY1,PROG1,_	OsbHLH038,Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,lazy1, LA1, OsLazy1,OsPROG1,OsIDD14, LPA1 
44549	28672893	Fan M.J., Yeh P.H., Lin J.P., Huang A.C., Lien J.C., Lin H.Y., Chung J.G.	Anthocyanins from black rice (Oryza sativa) promote immune responses in leukemia through enhancing phagocytosis of macrophages in vivo.	Exp Ther Med	14(1)	59-64	2017		
44550	28481332	Wu W., Liu X., Wang M., Meyer R.S., Luo X., Ndjiondjop M.N., Tan L., Zhang J., Wu J., Cai H., Sun C., Wang X., Wing R.A., Zhu Z.	A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication.	Nat Plants	3	17064	2017	_	GL4, GL4/ObSH4, SH4
44551	28533193	Xie Y., Xu P., Huang J., Ma S., Xie X., Tao D., Chen L., Liu Y.G.	Interspecific Hybrid Sterility in Rice Is Mediated by?OgTPR1 at the S1 Locus Encoding a Peptidase-like Protein.	Mol Plant	10(8)	1137-1140	2017	_,S1,_	OsFbox291, Os_F0516,,OsTP1, TP1
44552	28371825	Ma L., Zhang D., Miao Q., Yang J., Xuan Y., Hu Y.	Essential Role of sugar transporter OsSWEET11 During the Early Stage of Rice Grain Filling.	Plant Cell Physiol.	58(5)	863-873	2017		
44553	28464384	Jiang Y., van Groenigen KJ., Huang S., Hungate B.A., van Kessel C., Hu S., Zhang J., Wu L., Yan X., Wang L., Chen J., Hang X., Zhang Y., Horwath W.R., Ye R., Linquist B.A., Song Z., Zheng C., Deng A., Zhang W.	Higher yields and lower methane emissions with new rice cultivars.	Glob Chang Biol			2017		
44554	28368237	Mutiga S.K., Rotich F., Ganeshan V.D., Mwongera D.T., Mgonja E.M., Were V.M., Harvey J.W., Zhou B., Wasilwa L., Feng C., Ou?draogo I., Wang G.L., Mitchell T.K., Talbot N.J., Correll J.C.	Assessment of the Virulence Spectrum and Its Association with Genetic Diversity in Magnaporthe oryzae Populations from Sub-Saharan Africa.	Phytopathology	107(7)	852-863	2017		
44555	28466470	Le T.T.T., Williams B., Mundree S.G.	An osmotin from the resurrection plant Tripogon loliiformis (TlOsm) confers tolerance to multiple abiotic stresses in transgenic rice.	Physiol Plant			2017		
44556	28499068	Nakata M., Miyashita T., Kimura R., Nakata Y., Takagi H., Kuroda M., Yamaguchi T., Umemoto T., Yamakawa H.	MutMapPlus identified novel mutant alleles of a rice starch branching enzyme IIb gene for fine-tuning of cooked rice texture.	Plant Biotechnol. J.			2017		
44557	28500411	Hamaoka N., Yasui H., Yamagata Y., Inoue Y., Furuya N., Araki T., Ueno O., Yoshimura A.	A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice.	Rice (N Y)	10(1)	20	2017	BKL	
44558	28830102	Jiang W., Zhou S., Zhang Q., Song H., Zhou D.X., Zhao Y.	Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice.	J. Exp. Bot.	68(11)	2787-2798	2017	WOX11,ERF92,CATA,MADS47,_,_,_,RAA1,_,ASR1,_,_,PT4,DH1,RBOHF	OsWOX11, Os WOX11, OsWOX12A,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsMADS47, OsMDP1, MDP, MDP1,prx130,OsbHLH020, bHLH020, bHLH20,,OsRAA1,prx72,OsAsr1, OsASR3, ASR3, Asr3,,OsFRDL1, FRDL1,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsDH1, OsLBD2-1, LBD2-1, OsLOB16, LOB16,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE
44559	28555430	Ayd?n Akbudak M., Srivastava V.	Effect of gene order in DNA constructs on gene expression upon integration into plant genome.	3 Biotech	7(2)	94	2017		
44560	28469237	Du H., Yu Y., Ma Y., Gao Q., Cao Y., Chen Z., Ma B., Qi M., Li Y., Zhao X., Wang J., Liu K., Qin P., Yang X., Zhu L., Li S., Liang C.	Sequencing and de novo assembly of a near complete indica rice genome.	Nat Commun	8	15324	2017		
44561	28553299	Lin Q., Zhou Z., Luo W., Fang M., Li M., Li H.	Screening of Proximal and Interacting Proteins in Rice Protoplasts by Proximity-Dependent Biotinylation.	Front Plant Sci	8	749	2017	BZIP77,_,_,BZIP55,PRF2	OsbZIP77, OsFD1, FD1,OsRab1B2, OsRas1,,OsbZIP55, OsFD2,OsPRF2
44562	28548655	Nadal M., Sawers R., Naseem S., Bassin B., Kulicke C., Sharman A., An G., An K., Ahern K.R., Romag A., Brutnell T.P., Gutjahr C., Geldner N., Roux C., Martinoia E., Konopka J.B., Paszkowski U.	An N-acetylglucosamine transporter required for arbuscular mycorrhizal symbioses in rice and maize.	Nat Plants	3	17073	2017	NOPE1 	
44563	28611791	Daware A.V., Srivastava R., Singh A.K., Parida S.K., Tyagi A.K.	Regional Association Analysis of MetaQTLs Delineates Candidate grain size Genes in Rice.	Front Plant Sci	8	807	2017		
44564	28505081	Nakata H., Lin C.Y., Abolhassani M., Ogawa T., Tateno H., Hirabayashi J., Muramoto K.	Isolation of Rice Bran Lectins and Characterization of Their Unique Behavior in Caco-2 Cells.	Int J Mol Sci	18(5)		2017		
44565	28479230	Thussagunpanit J., Jutamanee K., Homvisasevongsa S., Suksamrarn A., Yamagami A., Nakano T., Asami T.	Characterization of synthetic ecdysteroid analogues as functional mimics of brassinosteroids in plant growth.	J. Steroid Biochem. Mol. Biol.	172	1-8	2017		
44566	28465621	Yang Q.Q., Suen P.K., Zhang C.Q., Mak W.S., Gu M.H., Liu Q.Q., Sun S.S.	Improved growth performance, food efficiency, and lysine availability in growing rats fed with lysine-biofortified rice.	Sci Rep	7(1)	1389	2017		
44567	28547737	Yuan H., Fan S., Huang J., Zhan S., Wang S., Gao P., Chen W., Tu B., Ma B., Wang Y., Qin P., Li S.	08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice.	Rice (N Y)	10(1)	25	2017	_,BRD1,D2,DWARF4,LK3	OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
44568	28500344	Nakano H., Yoshinaga S., Takai T., Arai-Sanoh Y., Kondo K., Yamamoto T., Sakai H., Tokida T., Usui Y., Nakamura H., Hasegawa T., Kondo M.	Quantitative trait loci for large sink capacity enhance rice grain yield under free-air CO2 enrichment conditions.	Sci Rep	7(1)	1827	2017		
44569	28558018	Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.	Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).	PLoS ONE	12(5)	e0177989	2017	PSBA,FGL,YGL10,RBCL,RPOA,YGL1,YGL98,PSAA,_,ELL,YL1,_,_	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,rbcL, rbcA, OsrbcL,rope, rpoalpha, Rpoalpha, rope, RpoA ,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,PsaA, psaA, PsAA1,OsDVR, DVR,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,OsChlH, ChlH, CHLH, OsCHLH
44570	28500402	Chandel G., Dubey M., Gupta S., Patil A.H., Rao A.R.	Identification and characterization of a grain micronutrient-related OsFRO2 rice gene ortholog from micronutrient-rich little millet (Panicum sumatrense).	3 Biotech	7(1)	80	2017		
44571	28499072	Wambugu P., Ndjiondjop M.N., Furtado A., Henry R.	Sequencing of bulks of segregants allows dissection of genetic control of amylose content in rice.	Plant Biotechnol. J.			2017	GLUA1,HAP5H,SSIVA,WX1,_,NAC25,_	Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,OsSSIVa, SSIV-1, OsSSIV-1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsEnS-15, EnS-15,ONAC025, ONAC25, OsEnS-144,OsbHLH071, bHLH071, bHLH71
44572	28489041	Sansenya S., Hua Y., Chumanee S., Phasai K., Sricheewin C.	Effect of Gamma Irradiation on 2-Acetyl-1-pyrroline Content, GABA Content and Volatile Compounds of Germinated Rice (Thai Upland Rice).	Plants (Basel)	6(2)		2017		
44573	28533017	Benavent-Gil Y., Rosell C.M.	Morphological and physicochemical characterization of porous starches obtained from different botanical sources and amylolytic enzymes.	Int. J. Biol. Macromol.	103	587-595	2017		
44574	28575477	Wang G.Q., Hao S.S., Gao B., Chen M.X., Liu Y.G., Yang J.C., Ye N.H., Zhang J.H.	Regulation of gene expressions in the remobilization of carbon reserve in straws of rice at grain filling.	Plant Cell Physiol.			2017		
44575	28588605	Pan L., Zhao H., Yu Q., Bai L., Dong L.	miR397/Laccase Gene Mediated Network Improves Tolerance to Fenoxaprop-P-ethyl in Beckmannia syzigachne and Oryza sativa.	Front Plant Sci	8	879	2017	AAO5,ARF5,LAC15,_,_,AOX1C,_	OsAAO5,OsARF5,OsLAC, OsLAC15, OsLAC13, LAC13 ,prx72,Os-MYB2, OsMYB2, MYB2,OsAOX1c,Os-MYB39, OsMYB39, MYB39
44576	28736485	Civ?? P., Brown T.A.	Origin of rice (Oryza sativa L.) domestication genes.	Genet. Resour. Crop Evol.	64(6)	1125-1132	2017	PROG1,RC,SH4,LABA1	OsPROG1,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,LOGL6, OsLOGL6, An-2
44577	28588596	Din M., Zheng W., Rashid M., Wang S., Shi Z.	Evaluating Hyperspectral Vegetation Indices for leaf area Index Estimation of Oryza sativa L. at Diverse Phenological Stages.	Front Plant Sci	8	820	2017		
44578	28555143	Muthuramalingam P., Krishnan S.R., Pothiraj R., Ramesh M.	Global Transcriptome Analysis of Combined Abiotic Stress Signaling Genes Unravels Key Players in Oryza sativa L.: An In silico Approach.	Front Plant Sci	8	759	2017		
44579	28560587	De Schutter K., Tsaneva M., Kulkarni S.R., Roug? P., Vandepoele K., Van Damme EJM.	Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa).	Rice (N Y)	10(1)	26	2017		
44580	28540496	Kant R., Dasgupta I.	Phenotyping of VIGS-mediated gene silencing in rice using a vector derived from a DNA virus.	Plant Cell Rep.	36(7)	1159-1170	2017		
44581	28526984	Yan H., Li L., Liu P., Jiang X., Wang L., Fang J., Lin Z., Wang F., Su J., Lu B.R.	Reduced weed seed shattering by silencing a cultivated rice gene: strategic mitigation for escaped transgenes.	Transgenic Res.	26(4)	465-475	2017		
44582	28744184	Zhang A., Liu C., Chen G., Hong K., Gao Y., Tian P., Peng Y., Zhang B., Ruan B., Jiang H., Guo L., Qian Q., Gao Z.	Genetic analysis for rice seedling vigor and fine mapping of a major QTL qSSL1b for seedling shoot length.	Breed. Sci.	67(3)	307-315	2017		
44583	28521637	Kanda Y., Yokotani N., Maeda S., Nishizawa Y., Kamakura T., Mori M.	The receptor-like cytoplasmic kinase BSR1 mediates chitin-induced defense signaling in rice cells.	Biosci. Biotechnol. Biochem.	81(8)	1497-1502	2017		
44584	28371923	Yasui Y., Tanaka W., Sakamoto T., Kurata T., Hirano H.Y.	Genetic Enhancer Analysis Reveals that FLORAL ORGAN NUMBER2 and OsMADS3 Co-operatively Regulate Maintenance and Determinacy of the Flower Meristem in Rice.	Plant Cell Physiol.	58(5)	893-903	2017		
44585	28556941	Wang D.R., Han R., Wolfrum E.J., McCouch S.R.	The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa.	New Phytol.	215(2)	658-671	2017		
44586	28582731	Zhu Q., Wang L., Dong Q., Chang S., Wen K., Jia S., Chu Z., Wang H., Gao P., Zhao H., Han S., Wang Y.	FRET-based glucose imaging identifies glucose signalling in response to biotic and abiotic stresses in rice roots.	J. Plant Physiol.	215	65-72	2017		
44587	28712502	Bi H., Yang B.	Gene Editing With TALEN and CRISPR/Cas in Rice.	Prog Mol Biol Transl Sci	149	81-98	2017		
44588	28534133	Caddell D.F., Park C.J., Thomas N.C., Canlas P.E., Ronald P.C.	Silencing of the Rice Gene LRR1 Compromises Rice XA21 transcript Accumulation and XA21-Mediated Immunity.	Rice (N Y)	10(1)	23	2017	BZIP7,TRXM5,CML24,_,PSAK,_,TIFY11D,XA21,_,MTI3A,_,_,_,_,_,WRKY53,RLCK11,_,GLN1;1,_,_,_,_,NPC1,LEA24	OsbZIP07, OsbZIP7,OsTRX m5, Ostrxm5, OsTRXM5,OsCML24,,PsaK,,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,Xa21*, Xa21, OsXA21,OsDjC82, DjC82, XB21,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsUSP, USP,,,BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2,,OsWRKY53, WRKY-53,OsRLCK11,,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1,OsSERK2, OsBiSERK1, OsSERK1, OsSerk2, OsBAK1-2,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,OsLRP, OsLRR1, LRR1,,OsNPC1,OsLEA24, WSI724
44589	28556915	Pruitt R.N., Joe A., Zhang W., Feng W., Stewart V., Schwessinger B., Dinneny J.R., Ronald P.C.	A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone.	New Phytol.	215(2)	725-736	2017		
44590	28487273	Yifan W., Zhen L., Jiaowen P., Yingxiu L., Qingguo W., Yan'an G., Wei L.	Cloning and functional analysis of the SiRLK35 gene in Setaria italic L.	Yi Chuan	39(5)	413-422	2017		
44591	28493203	Chaipanya C., Telebanco-Yanoria MJ., Quime B., Longya A., Korinsak S., Korinsak S., Toojinda T., Vanavichit A., Jantasuriyarat C., Zhou B.	Dissection of broad-spectrum resistance of the Thai rice variety Jao Hom Nin conferred by two resistance genes against rice blast.	Rice (N Y)	10(1)	18	2017		
44592	28550206	Dell'Aglio E., Boycheva S., Fitzpatrick T.B.	The pseudoenzyme PDX1.2 Sustains Vitamin B6 Biosynthesis as a Function of Heat Stress.	Plant Physiol.	174(4)	2098-2112	2017	HSP101,PDX1.3B,PDX1.3A,PDX1.3C	Oshsp101, OsHSP101, ClpB-cyt, OsClpB-cyt, ClpB-C/Hsp100, OsClpB-C,OsPDX1.3b,OsPDX1.3a,OsPDX1.3c
44593	28551765	Yue E., Li C., Li Y., Liu Z., Xu J.H.	miR529a modulates panicle architecture through regulating SQUAMOSA PROMOTER BINDING-LIKE genes in rice (Oryza sativa).	Plant Mol. Biol.	94(4-5)	469-480	2017		
44594	28556940	Tanaka W., Toriba T., Hirano H.Y.	Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice.	New Phytol.	215(2)	825-839	2017	SEU3,YAB5,SEU,YAB4,SEU2,YAB3	OsSEU3,OsYABBY5, OsYAB3, YAB3, Os YABBY5, TOB1,OsSEU, OsSEU1, SEU1 ,OsYAB4, OsYAB7, TOB2, ,OsSEU2,OsYAB3, OsYAB4, TOB3
44595	28546437	Shivhare D., Mueller-Cajar O.	In Vitro Characterization of Thermostable CAM Rubisco activase Reveals a Rubisco Interacting Surface Loop.	Plant Physiol.	174(3)	1505-1516	2017		
44596	28470512	Liu W.T., Chen P.W., Chen L.C., Yang C.C., Chen S.Y., Huang G., Lin T.C., Ku H.M., Chen J.J.W.	Suppressive effect of microRNA319 expression on rice plant height.	Theor. Appl. Genet.	130(7)	1507-1518	2017		
44597	28466433	Crofts N., Sugimoto K., Oitome N.F., Nakamura Y., Fujita N.	Differences in specificity and compensatory functions among three major starch synthases determine the structure of amylopectin in rice endosperm.	Plant Mol. Biol.	94(4-5)	399-417	2017	ALK,FLO5,SSI,WX1	alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSI, SSS 1, SSS1, SS1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
44598	28529503	Reim A., Hern?ndez M., Klose M., Chidthaisong A., Yuttitham M., Conrad R.	Response of Methanogenic Microbial Communities to Desiccation Stress in Flooded and Rain-Fed Paddy Soil from Thailand.	Front Microbiol	8	785	2017		
44599	28611804	Dong Y., Jin X., Tang Q., Zhang X., Yang J., Liu X., Cai J., Zhang X., Wang X., Wang Z.	Development and Event-specific Detection of Transgenic Glyphosate-resistant Rice Expressing the G2-EPSPS gene.	Front Plant Sci	8	885	2017		
44600	28744170	Nagaoka I., Sasahara H., Tabuchi H., Shigemune A., Matsushita K., Maeda H., Goto A., Fukuoka S., Ando T., Miura K.	Improvement of seed shattering and dormancy in Oryza sativa L. 'Hokuriku 193' based on genetic information.	Breed. Sci.	67(3)	173-180	2017		
44601	28744182	Jing W., Deng P., Cao C., Zhang W.	Fine mapping of qSKC-1, a major quantitative trait locus for shoot K(+) concentration, in rice seedlings grown under salt stress.	Breed. Sci.	67(3)	286-295	2017		
44602	28529470	Cao X., Liu Y., Liu Z., Liu F., Wu Y., Zhou Z., Cai X., Wang X., Zhang Z., Wang Y., Luo Z., Peng R., Wang K.	Microdissection of the Ah01 chromosome in upland cotton and microcloning of resistance gene anologs from the single chromosome.	Hereditas	154	13	2017		
44603	28611797	Kadam S., Abril A., Dhanapal A.P., Koester R.P., Vermerris W., Jose S., Fritschi F.B.	Characterization and Regulation of Aquaporin Genes of Sorghum [Sorghum bicolor (L.) Moench] in Response to Waterlogging Stress.	Front Plant Sci	8	862	2017		
44604	28560644	Ahad R.I.A., Goswami S., Syiem M.B.	Biosorption and equilibrium isotherms study of cadmium removal by Nostoc muscorum Meg 1: morphological, physiological and biochemical alterations.	3 Biotech	7(2)	104	2017		
44605	28549969	Du A., Tian W., Wei M., Yan W., He H., Zhou D., Huang X., Li S., Ouyang X.	The DTH8-Hd1 module Mediates Day-Length-Dependent Regulation of Rice Flowering.	Mol Plant	10(7)	948-961	2017	SE1,HD3A,RFT1,EF1,HD5	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
44606	28517045	Liu K., Yu Y., Dong A., Shen W.H.	SET DOMAIN GROUP701 encodes a H3K4-methytransferase and regulates multiple key processes of rice plant development.	New Phytol.	215(2)	609-623	2017	RFT1,EF1,HD3A,_	FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsSET27, SDG701 
44607	28582550	Sasaki K., Fujita D., Koide Y., Lumanglas P.D., Gannaban R.B., Tagle A.G., Obara M., Fukuta Y., Kobayashi N., Ishimaru T.	Fine mapping of a quantitative trait locus for spikelet number per panicle in a new plant type rice and evaluation of a near-isogenic line for grain productivity.	J. Exp. Bot.	68(11)	2693-2702	2017		
44608	28483441	Jia M., Yu X., Jiang J., Li Z., Feng Y.	The cytidine repressor participates in the regulatory pathway of indole in Pantoea agglomerans.	Res. Microbiol.			2017		
44609	28558653	Shi Y., Gao L., Wu Z., Zhang X., Wang M., Zhang C., Zhang F., Zhou Y., Li Z.	Genome-wide association study of salt tolerance at the seed germination stage in rice.	BMC Plant Biol.	17(1)	92	2017		
44610	28487477	Chen Z.C., Yamaji N., Horie T., Che J., Li J., An G., Ma J.F.	A Magnesium Transporter OsMGT1 Plays a Critical Role in salt tolerance in Rice.	Plant Physiol.	174(3)	1837-1849	2017		
44611	28567664	Hackauf B., Haffke S., Fromme F.J., Roux S.R., Kusterer B., Musmann D., Kilian A., Miedaner T.	QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye.	Theor. Appl. Genet.			2017		
44612	28469286	Li T., Angeles O., Marcaida M., Manalo E., Manalili M.P., Radanielson A., Mohanty S.	From ORYZA2000 to ORYZA (v3): An improved simulation model for rice in drought and nitrogen-deficient environments.	Agricultural and Forest Meteorology	237-238	246-256	2017		
44613	28587095	Van Holle S., De Schutter K., Eggermont L., Tsaneva M., Dang L., Van Damme EJM.	Comparative Study of Lectin Domains in Model Species: New Insights into Evolutionary Dynamics.	Int J Mol Sci	18(6)		2017		
44614	28483876	Zhu Y., Yu Y., Cheng K., Ouyang Y., Wang J., Gong L., Zhang Q., Li X., Xiao J., Zhang Q.	Processes Underlying a Reproductive Barrier in indica-japonica Rice Hybrids Revealed by Transcriptome Analysis.	Plant Physiol.	174(3)	1683-1696	2017		
44615	28523639	Swamy B.P.M., Shamsudin N.A.A., Rahman S.N.A., Mauleon R., Ratnam W., Sta Cruz MT., Kumar A.	Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.).	Rice (N Y)	10(1)	21	2017		
44616	28522870	Guo J., Hu X., Gao L., Xie K., Ling N., Shen Q., Hu S., Guo S.	The rice production practices of high yield and high nitrogen use efficiency in Jiangsu, China.	Sci Rep	7(1)	2101	2017		
44617	28553305	Moon S.J., Kim H.Y., Hwang H., Kim J.A., Lee Y., Min M.K., Yoon I.S., Kwon T.R., Kim B.G.	A Dominant Negative OsKAT2 Mutant Delays Light-Induced Stomatal Opening and Improves drought tolerance without Yield Penalty in Rice.	Front Plant Sci	8	772	2017		
44618	28551566	Cui J., Liu T., Li F., Yi J., Liu C., Yu H.	Silica nanoparticles alleviate cadmium toxicity in rice cells: Mechanisms and size effects.	Environ. Pollut.	228	363-369	2017		
44619	28744172	Kinoshita N., Kato M., Koyasaki K., Kawashima T., Nishimura T., Hirayama Y., Takamure I., Sato T., Kato K.	Identification of quantitative trait loci for rice grain quality and yield-related traits in two closely related Oryza sativa L. subsp. japonica cultivars grown near the northernmost limit for rice paddy cultivation.	Breed. Sci.	67(3)	191-206	2017		
44620	28647840	Yang J., Sun X.Q., Yan S.Y., Pan W.J., Zhang M.X., Cai Q.N.	Interaction of Ferulic Acid with Glutathione S-Transferase and Carboxylesterase Genes in the Brown Planthopper, Nilaparvata lugens.	J. Chem. Ecol.			2017		
44621	28600945	Mondal N.K.	Effect of fluoride on photosynthesis, growth and accumulation of four widely cultivated rice (Oryza sativa L.) varieties in India.	Ecotoxicol. Environ. Saf.	144	36-44	2017		
44622	28627026	Zeng Y., Li Q., Wang H., Zhang J., Du J., Feng H., Blumwald E., Yu L., Xu G.	Two NHX-type transporters from Helianthus tuberosus improve the tolerance of rice to salinity and nutrient deficiency stress.	Plant Biotechnol. J.			2017		
44623	28592666	Kassaw T., Nowak S., Schnabel E., Frugoli J.	ROOT DETERMINED NODULATION1 Is Required for M. truncatula CLE12, But Not CLE13, Peptide Signaling through the SUNN Receptor Kinase.	Plant Physiol.	174(4)	2445-2456	2017	RDN	OsRDN, OsRDN1, RDN1
44624	28671251	Henriques A.R., Farias D.D.R., Costa de Oliveira A.	Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals.	Genet. Mol. Res.	16(2)		2017		
44625	28694820	Wang Y., Ren Y., Zhou K., Liu L., Wang J., Xu Y., Zhang H., Zhang L., Feng Z., Wang L., Ma W., Wang Y., Guo X., Zhang X., Lei C., Cheng Z., Wan J.	WHITE STRIPE LEAF4 Encodes a Novel P-Type PPR Protein Required for Chloroplast Biogenesis during Early Leaf Development.	Front Plant Sci	8	1116	2017	PSBA,_,FGL,RPS12,NDHA,RPL2,RPL2,ELL,WSL4,_,CAB2R,RBCS,YGL98,PSAB,PSAA	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,atpF,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,rps12,ndhA,rpl2,rpl2,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,OsSTA65, STA65,OsChlH, ChlH, CHLH, OsCHLH,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,PsaB, psaB, PsAA2,PsaA, psaA, PsAA1
44626	28664567	Liu J., Du H., Ding X., Zhou Y., Xie P., Wu J.	Mechanisms of callose deposition in rice regulated by exogenous abscisic acid and its involvement in rice resistance to Nilaparvata lugens St?l (Hemiptera:?Delphacidae).	Pest Manag. Sci.			2017		
44627	28645639	Meng X., Yu H., Zhang Y., Zhuang F., Song X., Gao S., Gao C., Li J.	Construction of a Genome-Wide Mutant Library in?Rice Using CRISPR/Cas9.	Mol Plant			2017		
44628	28599126	Zia Z., Bakhat H.F., Saqib Z.A., Shah G.M., Fahad S., Ashraf M.R., Hammad H.M., Naseem W., Shahid M.	Effect of water management and silicon on germination, growth, phosphorus and arsenic uptake in rice.	Ecotoxicol. Environ. Saf.	144	11-18	2017		
44629	28158396	Iwayama K., Aisaka Y., Kutsuna N., Nagano A.J.	FIT: statistical modeling tool for transcriptome dynamics under fluctuating field conditions.	Bioinformatics	33(11)	1672-1680	2017		
44630	28605980	Shahzad R., Waqas M., Khan A.L., Al-Hosni K., Kang S.M., Seo C.W., Lee I.J.	Indoleacetic acid production and plant growth promoting potential of bacterial endophytes isolated from rice (Oryza sativa L.) seeds.	Acta. Biol. Hung.	68(2)	175-186	2017		
44631	28664529	El-Namaky R., van Oort PAJ.	Phenology, sterility and inheritance of two environment genic male sterile (EGMS) lines for hybrid rice.	Rice (N Y)	10(1)	31	2017		
44632	28751198	Watanabe B., Yamamoto S., Yokoi T., Sugiura A., Horoiwa S., Aoki T., Miyagawa H., Nakagawa Y.	Brassinolide-like activity of castasterone analogs with varied side chains against rice lamina inclination.	Bioorg. Med. Chem.	25(17)	4566-4578	2017		
44633	28630893	Ma H., Duan J., Ke J., He Y., Gu X., Xu T.H., Yu H., Wang Y., Brunzelle J.S., Jiang Y., Rothbart S.B., Xu H.E., Li J., Melcher K.	A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex.	Sci Adv	3(6)	e1601217	2017	ASP1,D53,_	OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3,D53(D K3), DK3, Dwf34, SMXL6/7/8,OsWD40-12, TPR1
44634	28577284	Park C.J., Wei T., Sharma R., Ronald P.C.	Overexpression of Rice auxilin-like protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae.	Rice (N Y)	10(1)	27	2017	_,XA21	OsDjC82, DjC82, XB21,Xa21*, Xa21, OsXA21
44635	28663588	Fang Y.L., Peng Y.L., Fan J.	The Nep1-like protein family of Magnaporthe oryzae is dispensable for the infection of rice plants.	Sci Rep	7(1)	4372	2017		
44636	28655403	Schmalzer S.	Yuan Longping, hybrid rice, and the meaning of science in the cultural revolution and beyond.	Endeavour			2017		
44637	28488420	Kobayashi N.I., Yamaji N., Yamamoto H., Okubo K., Ueno H., Costa A., Tanoi K., Matsumura H., Fujii-Kashino M., Horiuchi T., Nayef M.A., Shabala S., An G., Ma J.F., Horie T.	OsHKT1;5 mediates Na(+) exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.	Plant J.	91(4)	657-670	2017	HKT8	OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
44638	28671258	Auler P.A., Benitez L.C., do Amaral MN., Vighi I.L., Rodrigues G.S., da Maia LC., Braga E.J.B.	Selection of candidate reference genes and validation for real-time PCR studies in rice plants exposed to low temperatures.	Genet. Mol. Res.	16(2)		2017	SODCC1,APX2,RFA4,RUBQ2,_,UBQ5,CATC	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,rubq2, rub1, Ubq1, Rubq1, UBQ10 ,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,RPS27a, OsUBQ5, OsRPS27a,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3
44639	28642778	Li M., Wang W.S., Pang Y.L., Domingo J.R., Ali J., Xu J.L., Fu B.Y., Venus E.B., Li Z.K.	Characterization of Salt-Induced Epigenetic Segregation by Genome-Wide Loss of Heterozygosity and its Association with Salt Tolerance in Rice (Oryza sativa L.).	Front Plant Sci	8	977	2017		
44640	28633373	Nakajima Y., Nara Y., Kobayashi A., Sugita T., Miyazawa Y., Fujii N., Takahashi H.	Auxin transport and response requirements for root hydrotropism differ between plant species.	J. Exp. Bot.	68(13)	3441-3456	2017		
44641	28638401	Fan F., Li N., Chen Y., Liu X., Sun H., Wang J., He G., Zhu Y., Li S.	Development of Elite BPH-Resistant Wide-Spectrum Restorer Lines for Three and Two Line Hybrid Rice.	Front Plant Sci	8	986	2017	RF1,_,_,RF3,_,BPH9,BPH6	Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6,Gn8.1,Rf6,Rf3* (R2, Rf2), Rf2, R2, Rf3, Rf-3,Rf4, Rf-4, PPR782a, PPR9, PPR3,Bph9, BPH9/26,Bph6
44642	28668595	Ashrafuzzaman M., Lubna F.A., Holtkamp F., Manning W.J., Kraska T., Frei M.	Diagnosing ozone stress and differential tolerance in rice (Oryza sativa L.) with ethylenediurea (EDU).	Environ. Pollut.	230	339-350	2017		
44643	28487379	Sawicki A., Zhou S., Kwiatkowski K., Luo M., Willows R.D.	1-N-histidine phosphorylation of ChlD by the AAA(+) ChlI2 stimulates magnesium chelatase activity in chlorophyll synthesis.	Biochem. J.	474(12)	2095-2105	2017		
44644	28654018	Wang Y., Hou Y., Qiu J., Li Z., Zhao J., Tong X., Zhang J.	A Quantitative Acetylomic Analysis of Early Seed Development in Rice (Oryza sativa L.).	Int J Mol Sci	18(7)		2017		
44645	28549191	Gu M., Zhang J., Li H., Meng D., Li R., Dai X., Wang S., Liu W., Qu H., Xu G.	Maintenance of phosphate homeostasis and root development are coordinately regulated by MYB1, an R2R3-type MYB transcription factor in rice.	J. Exp. Bot.	68(13)	3603-3615	2017		
44646	28645638	Lu Y., Ye X., Guo R., Huang J., Wang W., Tang J., Tan L., Zhu J.K., Chu C., Qian Y.	Genome-wide Targeted Mutagenesis in Rice Using the CRISPR/Cas9 System.	Mol Plant			2017		
44647	28577021	Zhang R., Xue C., Liu G., Liu X., Zhang M., Wang X., Zhang T., Gong Z.	Segmental Duplication of Chromosome 11 and its Implications for Cell Division and Genome-wide Expression in Rice.	Sci Rep	7(1)	2689	2017		
44648	28620222	Singh P.K., Indoliya Y., Chauhan A.S., Singh S.P., Singh A.P., Dwivedi S., Tripathi R.D., Chakrabarty D.	Nitric oxide mediated transcriptional modulation enhances plant adaptive responses to arsenic stress.	Sci Rep	7(1)	3592	2017		
44649	28622672	Zhang H., Yue M., Zheng X., Xie C., Zhou H., Li L.	Physiological effects of single- and multi-walled carbon nanotubes on rice seedlings.	IEEE Trans Nanobioscience			2017		
44650	28573759	Wakabayashi K., Soga K., Hoson T., Kotake T., Kojima M., Sakakibara H., Yamazaki T., Higashibata A., Ishioka N., Shimazu T., Kamada M.	Persistence of plant hormone levels in rice shoots grown under microgravity conditions in space: its relationship to maintenance of shoot growth.	Physiol Plant			2017		
44651	28653783	Samofalova D.O., Karpov P.A., Raevsky A.V., Blume Y.B.	Protein phosphatases potentially associated with regulation of microtubules, their spatial structure reconstruction and analysis.	Cell Biol. Int.			2017		
44652	28676818	Gu J., Zhou Z., Li Z., Chen Y., Wang Z., Zhang H., Yang J.	Photosynthetic Properties and Potentials for Improvement of Photosynthesis in Pale Green Leaf Rice under High Light Conditions.	Front Plant Sci	8	1082	2017		
44653	28584974	Ps S., Sv A.M., Prakash C., Mk R., Tiwari R., Mohapatra T., Singh N.K.	High Resolution Mapping of QTLs for heat tolerance in Rice Using a 5K SNP Array.	Rice (N Y)	10(1)	28	2017		
44654	28690622	Zhong C., Cao X., Hu J., Zhu L., Zhang J., Huang J., Jin Q.	Nitrogen Metabolism in Adaptation of Photosynthesis to Water Stress in Rice Grown under Different Nitrogen Levels.	Front Plant Sci	8	1079	2017		
44655	28650429	Kim J.M., To T.K., Matsui A., Tanoi K., Kobayashi N.I., Matsuda F., Habu Y., Ogawa D., Sakamoto T., Matsunaga S., Bashir K., Rasheed S., Ando M., Takeda H., Kawaura K., Kusano M., Fukushima A., Endo T.A., Kuromori T., Ishida J., Morosawa T., Tanaka M., Torii C., Takebayashi Y., Sakakibara H., Ogihara Y., Saito K., Shinozaki K., Devoto A., Seki M.	Acetate-mediated novel survival strategy against drought in plants.	Nat Plants	3	17097	2017		
44656	28716407	Fang C., Zhang P., Jian X., Chen W., Lin H., Li Y., Lin W.	Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress.	Plant Sci.	262	115-126	2017	_,MIR395O,_,MIR395C,MIR1860,MIR390,_,MIR530,WRKY53,LSI1,MIR169	OsFKBP20-2, FKBP20-2,OsmiR395o, miR395o, osa-MIR395o,OsSHM1, SHM1, OsSHMT1, SHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3,OsmiR395c, miR395c, osa-MIR395c,miR1860, osa-miR1860, osa-MIR1860osa-miR1860-3p osa-miR1860-5p,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,OsATPS, ATPS, OsaATPS, PAPSS,miR530, Osa-miR530, OsmiR530, osa-MIR530, osa-miR530 osa-miR530-3p, osa-miR530-5p,OsWRKY53, WRKY-53,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a
44657	28674279	Matsumoto H., Yasui Y., Kumamaru T., Hirano H.Y.	Characterization of a half-pipe-like leaf1 mutant that exhibits a curled leaf phenotype.	Genes Genet. Syst.			2017	_	HAL1
44658	28608803	Haslam T.M., Gerelle W.K., Graham S.W., Kunst L.	The Unique Role of the ECERIFERUM2-LIKE Clade of the BAHD Acyltransferase Superfamily in Cuticular Wax Metabolism.	Plants (Basel)	6(2)		2017	_	OsCER2, CER2
44659	28640974	Li Y., Zhang Y., Wang Q.X., Wang T.T., Cao X.L., Zhao Z.X., Zhao S.L., Xu Y.J., Xiao Z.Y., Li J.L., Fan J., Yang H., Huang F., Xiao S., Wang W.M.	RESISTANCE TO POWDERY MILDEW8.1 boosts pattern-triggered immunity against multiple pathogens in Arabidopsis and rice.	Plant Biotechnol. J.			2017	_	RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10
44660	28663756	Ahn H., Jung I., Shin S.J., Park J., Rhee S., Kim J.K., Jung W., Kwon H.B., Kim S.	Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice.	Front Plant Sci	8	1044	2017		
44661	28627335	Li C.C., Dang F., Li M., Zhu M., Zhong H., Hintelmann H., Zhou D.M.	Effects of exposure pathways on the accumulation and phytotoxicity of silver nanoparticles in soybean and rice.	Nanotoxicology	11(5)	699-709	2017		
44662	28605576	Hu X., Meng X., Liu Q., Li J., Wang K.	Increasing the efficiency of CRISPR-Cas9-VQR precise genome editing in rice.	Plant Biotechnol. J.			2017		
44663	28636095	Xie Y., Niu B., Long Y., Li G., Tang J., Zhang Y., Ren D., Liu Y.G., Chen L.	Suppression or knockout of SaF/SaM overcomes the Sa-mediated hybrid male sterility in rice.	J Integr Plant Biol			2017		
44664	28633293	Takemoto Y., Tsunemitsu Y., Fujii-Kashino M., Mitani-Ueno N., Yamaji N., Ma J.F., Kato S.I., Iwasaki K., Ueno D.	The Tonoplast-Localized Transporter MTP8.2 Contributes to Manganese Detoxification in the Shoots and Roots of Oryza sativa L.	Plant Cell Physiol.			2017	MTP8,MTP8.1	OsMTP8, MTP8.2, OsMTP8.2,OsMTP8.1
44665	28642772	Schl?ppi MR., Jackson A.K., Eizenga G.C., Wang A., Chu C., Shi Y., Shimoyama N., Boykin D.L.	Assessment of Five Chilling Tolerance Traits and GWAS Mapping in Rice Using the USDA Mini-Core Collection.	Front Plant Sci	8	957	2017		
44666	28607371	Ge C., Wang L., Ye W., Wu L., Cui Y., Chen P., Pan J., Zhang D., Hu J., Zeng D., Dong G., Qian Q., Guo L., Xue D.	Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.	Sci Rep	7(1)	3298	2017	RPOA,_,_,_,SGR,FGL,WFSL1,_,PSAA,_,_,PSBA,V1,V2,CAO2,NOL,YGL10	rope, rpoalpha, Rpoalpha, rope, RpoA ,AtpB,OsPorA, PORA, OsPORA,OsChlH, ChlH, CHLH, OsCHLH,sgr(t), sgr, OsSGR, OsSgr,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,,RPL5,PsaA, psaA, PsAA1,OsDVR, DVR,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,v1, NUS1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,OsCAO2, OsCAO, CAO,nol, NOL1, OsNOL, OsNOL1,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
44667	28611462	Chen Y., Sun X., Zhou X., Hebelstrup K.H., Blennow A., Bao J.	Highly phosphorylated functionalized rice starch produced by transgenic rice expressing the potato GWD1 gene.	Sci Rep	7(1)	3339	2017		
44668	28854638	Trung K.H., Nguyen T.K., Khuat H.B.T., Nguyen T.D., Khanh T.D., Xuan T.D., Nguyen X.H.	Whole Genome Sequencing Reveals the Islands of Novel Polymorphisms in Two Native Aromatic Japonica Rice Landraces from Vietnam.	Genome Biol Evol	9(6)	1816-1820	2017		
44669	28572585	Wang X., Zhang Z., Fu T., Hu L., Xu C., Gong L., Wendel J.F., Liu B.	Gene-body CG methylation and divergent expression of duplicate genes in rice.	Sci Rep	7(1)	2675	2017		
44670	28584922	Wang Y., Geng L., Yuan M., Wei J., Jin C., Li M., Yu K., Zhang Y., Jin H., Wang E., Chai Z., Fu X., Li X.	Deletion of a target gene in Indica rice via CRISPR/Cas9.	Plant Cell Rep.	36(8)	1333-1343	2017		
44671	28666057	Zhang J., Luo T., Wang W., Cao T., Li R., Lou Y.	Silencing OsSLR1 enhances the resistance of rice to the brown planthopper Nilaparvata lugens.	Plant Cell Environ.			2017		
44672	28592253	You C., Chen L., He H., Wu L., Wang S., Ding Y., Ma C.	iTRAQ-based proteome profile analysis of superior and inferior Spikelets at early grain filling stage in japonica Rice.	BMC Plant Biol.	17(1)	100	2017		
44673	28582424	Campbell M.T., Bandillo N., Al Shiblawi FRA., Sharma S., Liu K., Du Q., Schmitz A.J., Zhang C., V?ry AA., Lorenz A.J., Walia H.	Allelic variants of OsHKT1;1 underlie the divergence between indica and japonica subspecies of rice (Oryza sativa) for root sodium content.	PLoS Genet.	13(6)	e1006823	2017	HKT4	OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4
44674	28607357	Guo L., Qiu F., Gandhi H., Kadaru S., De Asis EJ., Zhuang J., Xie F.	Genome-wide association study of outcrossing in cytoplasmic male sterile lines of rice.	Sci Rep	7(1)	3223	2017		
44675	28640934	Brazier-Hicks M., Gershater M., Dixon D., Edwards R.	Substrate specificity and safener inducibility of the plant UDP-glucose-dependent family 1 glycosyltransferase super-family.	Plant Biotechnol. J.			2017	UGT87C1,UGT93B,CYP71Z7,CYP704A5,UGT703A2,UGT75K1,CYP71X12,CYP81A6,UGT710C2,UGT84D1,CYP71Z2,CYP71Y5,GSTZ2,CYP76M7,GSTU51,UGT703A1,UGT72J2,CYP71AK1,UGT85E2,GSTU52,UGT75E1,CYP87C2,CYP81A5,CYP51H5,UGT703A4,GSTU39,_,CYP709C11,CYP71E5,GSTU35,GSTU12,CYP71K9,GSTU19,UGT74H4,UGT72F1,GSTU15,GSTU47,GSTU10,CYP76M7,CYP734A2,CYP72A19,CYP78C6,UGT98B1,CYP89B4,_,UGT99B3,CYP71Y7,GSTU44,GSTU50,CYP709C9,UGT84C1,CYP709C5,_,CYP72A17,CYP72A18,UGT701A1,CYP71K7,CYP72A32,GSTU24,CYP71AA3,CYP71X14,CYP94C2,GSTU1,_,CYP71AA2,GSTU18,CYP96B5,GSTU5	OsUGT87C1,OsUGT93B,Oscyp71Z7,OsCYP704A5,,OsUGT75K1,OsEnS-26, EnS-26, Os CYP71X12,OsCYP81A6,OsUGT710C2,OsUGT84D1,Oscyp71Z2,OsCYP71Y5,OsGSTZ2, GSTZ-2,OsCYP76M7,OsGSTU51,OsUGT703A1,OsUGT72J2,OsCYP71AK1,,OsGSTU52,OsUGT75E1,OsCYP87C2,OsCYP81A5,OsCYP51H5,,OsGSTU39,OsGSTU4,OsCYP709C11,OsCYP71E5,OsGSTU35,OsGSTU12, OsGSTU6.2, GSTU6.2,OsCYP71K9,OsGSTU19, GSTU6, OsGSTU6.1, GSTU6.1,OsUGT74H4,,OsGSTU15,OsGSTU47,OsGSTU10,OsCYP76M7, CYP76M10, OsCYP76M10,OsCYP734A2,OsCYP72A19,OsCYP78C6,OsUGT98B1,OsCYP89B4,OsGSTU3,OsUGT98B3,OsCYP71Y7,OsGSTU44,OsGSTU50,OsCYP709C9,OsUGT84C1,OsCYP709C5,OsSGT, SGT, UGT74H3,OsCYP72A17,OsCYP72A18,OsUGT701A1,OsCYP71K7,OsCYP72A32,OsGSTU24,OsCYP71AA3,OsCYP71X14,OsCYP94C2,OsGSTU1,OsF5HL2, F5HL2, CYP84A6, OsCYP84A6,OsCYP71AA2,OsGSTU18, OsGSTU7, GSTU7,OsCYP96B5,OsGSTU5
44676	28634483	Samota M.K., Sasi M., Awana M., Yadav O.P., Amitha Mithra SV., Tyagi A., Kumar S., Singh A.	Elicitor-Induced Biochemical and Molecular Manifestations to Improve Drought Tolerance in Rice (Oryza sativa L.) through Seed-Priming.	Front Plant Sci	8	934	2017	ERF1,ERF108	Os06ERF, OsWR2, WR2, OsERF#001, OsERF001, OsERF1, AP2/EREBP#057, AP2/EREBP57, RD1,OsAP2, OsERF#108, OsERF108, AP2/EREBP#001, AP2/EREBP1, RD2
44677	28624908	Tan C.T., Yu H., Yang Y., Xu X., Chen M., Rudd J.C., Xue Q., Ibrahim A.M.H., Garza L., Wang S., Sorrells M.E., Liu S.	Development and validation of KASP markers for the greenbug resistance gene Gb7 and the Hessian fly resistance gene H32 in wheat.	Theor. Appl. Genet.			2017		
44678	28706525	Ramalingam J., Savitha P., Alagarasan G., Saraswathi R., Chandrababu R.	Functional Marker Assisted Improvement of Stable Cytoplasmic Male Sterile Lines of Rice for Bacterial Blight Resistance.	Front Plant Sci	8	1131	2017		
44679	28652621	Yang L., Han Y., Li P., Li F., Ali S., Hou M.	Silicon amendment is involved in the induction of plant defense responses to a phloem feeder.	Sci Rep	7(1)	4232	2017		
44680	28659945	Ghneim-Herrera T., Selvaraj M.G., Meynard D., Fabre D., Pe?a A., Ben Romdhane W., Ben Saad R., Ogawa S., Rebolledo M.C., Ishitani M., Tohme J., Al-Doss A., Guiderdoni E., Hassairi A.	Expression of the Aeluropus littoralis AlSAP Gene Enhances Rice Yield under Field Drought at the Reproductive Stage.	Front Plant Sci	8	994	2017	APX1,SODCC1,ZFP177	OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsSAP9, SAP9, ZFP33
44681	28657614	Chen H., Zhao Z., Liu L., Kong W., Lin Y., You S., Bai W., Xiao Y., Zheng H., Jiang L., Li J., Zhou J., Tao D., Wan J.	Genetic analysis of a hybrid sterility gene that causes both pollen and embryo sac sterility in hybrids between Oryza sativa L. and Oryza longistaminata.	Heredity	119(3)	166-173	2017	_,CSA,S40	,csa,
44682	28597326	Volante A., Tondelli A., Aragona M., Valente M.T., Biselli C., Desiderio F., Bagnaresi P., Matic S., Gullino M.L., Infantino A., Spadaro D., Val? G.	Identification of bakanae disease resistance loci in japonica rice through genome wide association study.	Rice (N Y)	10(1)	29	2017		
44683	28666113	Li W., Zhu Z., Chern M., Yin J., Yang C., Ran L., Cheng M., He M., Wang K., Wang J., Zhou X., Zhu X., Chen Z., Wang J., Zhao W., Ma B., Qin P., Chen W., Wang Y., Liu J., Wang W., Wu X., Li P., Wang J., Zhu L., Li S., Chen X.	A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.	Cell	170(1)	114-126.e15	2017	_,_,_,BSRD1	OsMYBS1, MYBS1, Os-MYBS1, Mybs1,prx128,prx69,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, bsr-d1 
44684	28713404	Kumar M., Gho Y.S., Jung K.H., Kim S.R.	Genome-Wide Identification and Analysis of Genes, Conserved between japonica and indica Rice Cultivars, that Respond to Low-Temperature Stress at the Vegetative Growth Stage.	Front Plant Sci	8	1120	2017		
44685	28184437	Li L., Fang Z., Zhou J., Chen H., Hu Z., Gao L., Chen L., Ren S., Ma H., Lu L., Zhang W., Peng H.	An accurate and efficient method for large-scale SSR genotyping and applications.	Nucleic Acids Res.	45(10)	e88	2017		
44686	28659583	Paleari L., Movedi E., Confalonieri R.	Trait-based model development to support breeding programs. A case study for salt tolerance and rice.	Sci Rep	7(1)	4352	2017		
44687	28674278	Kubo T., Yoshimura A., Kurata N.	Genetic characterization and fine mapping of S25, a Hybrid male sterility gene, on rice chromosome 12.	Genes Genet. Syst.			2017		
44688	28690618	Surapaneni M., Balakrishnan D., Mesapogu S., Addanki K.R., Yadavalli V.R., Tripura Venkata VGN., Neelamraju S.	Identification of Major Effect QTLs for Agronomic Traits and CSSLs in Rice from Swarna/Oryza nivara Derived Backcross Inbred Lines.	Front Plant Sci	8	1027	2017		
44689	28659941	Das G., Patra J.K., Baek K.H.	Insight into MAS: A Molecular Tool for Development of Stress Resistant and Quality of Rice through Gene Stacking.	Front Plant Sci	8	985	2017		
44690	28649256	Singh N., Singh B., Rai V., Sidhu S., Singh A.K., Singh N.K.	Evolutionary Insights Based on SNP Haplotypes of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice.	Front Plant Sci	8	972	2017		
44691	28676805	Awasthi S., Chauhan R., Srivastava S., Tripathi R.D.	The Journey of Arsenic from Soil to Grain in Rice.	Front Plant Sci	8	1007	2017		
44692	28592653	Raghavan C., Mauleon R., Lacorte V., Jubay M., Zaw H., Bonifacio J., Singh R.K., Huang B.E., Leung H.	Approaches in Characterizing Genetic Structure and Mapping in a Rice Multiparental Population.	G3 (Bethesda)	7(6)	1721-1730	2017		
44693	28647102	Wang L., Zhang Q.	Boosting Rice Yield by Fine-Tuning SPL Gene Expression.	Trends Plant Sci.	22(8)	643-646	2017		
44694	28637931	Goswami K., Tripathi A., Sanan-Mishra N.	Comparative miRomics of Salt-Tolerant and Salt-Sensitive Rice.	J Integr Bioinform	14(1)		2017		
44695	28554479	Chen M., Xie S., Ouyang Y., Yao J.	Rice PcG gene OsEMF2b controls seed dormancy and seedling growth by regulating the expression of OsVP1.	Plant Sci.	260	80-89	2017		
44696	28795104	Tan L.W., Tan C.S., Rahman Z.A., Goh H.H., Ismail I., Zainal Z.	Microarray dataset of transgenic rice overexpressing Abp57.	Data Brief	14	267-271	2017		
44697	28710664	Roy S., Chakraborty U.	Role of sodium ion transporters and osmotic adjustments in stress alleviation of Cynodon dactylon under NaCl treatment: a parallel investigation with rice.	Protoplasma			2017		
44698	28554480	Wang D., Wang Y., Long W., Niu M., Zhao Z., Teng X., Zhu X., Zhu J., Hao Y., Wang Y., Liu Y., Jiang L., Wang Y., Wan J.	SGD1, a key enzyme in tocopherol biosynthesis, is essential for plant development and cold tolerance in rice.	Plant Sci.	260	90-100	2017	_	OsVTE2, VTE2, SGD1, RTD1, OsHPT, HPT 
44699	28769961	Ko S.S., Li M.J., Lin Y.J., Hsing H.X., Yang T.T., Chen T.K., Jhong C.M., Ku M.S.	Tightly Controlled Expression of bHLH142 Is Essential for Timely Tapetal Programmed Cell Death and pollen Development in Rice.	Front Plant Sci	8	1258	2017	TDR,AP37 ,TDF1,UDT1,GAMYB,CYP704B2,_,MT2B,OSC6,_,PTC1,EAT1,OSC4,CP1,_,RAG	tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsAP37,OsTDF1, MYB35,Udt1, bHLH164, OsUDT1, OsbHLH164 ,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsCYP704B2,OsbHLH142, bHLH142, TIP2, OsTIP2,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsAP25, Radc1, AP25,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,OsCP1, Os CP1,OsMS2, MS2, OsDPW, DPW, DPW1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1
44700	28818384	Ribeiro C.W., Korbes A.P., Garighan J.A., Jardim-Messeder D., Carvalho F.E.L., Sousa R.H.V., Caverzan A., Teixeira F.K., Silveira J.A.G., Margis-Pinheiro M.	Rice peroxisomal ascorbate peroxidase knockdown affects ROS signaling and triggers early leaf senescence.	Plant Sci.	263	55-65	2017		
44701	28730413	Feng X., Wang C., Nan J., Zhang X., Wang R., Jiang G., Yuan Q., Lin S.	Updating the elite rice variety Kongyu 131 by improving the Gn1a locus.	Rice (N Y)	10(1)	35	2017		
44702	28723953	Zhu Q., Yu S., Chen G., Ke L., Pan D.	Analysis of the differential gene and protein expression profile of the rolled leaf mutant of transgenic rice (Oryza sativa L.).	PLoS ONE	12(7)	e0181378	2017		
44703	28812021	Li X., Hu B., Pan X., Zhang N., Wu D.	Association Analysis of Arsenic-Induced Straighthead in Rice (Oryza sativa L.) Based on the Selected Population with a Modified Model.	Biomed Res Int	2017	7641362	2017		
44704	28717360	Nguyen H.M., Sako K., Matsui A., Suzuki Y., Mostofa M.G., Ha C.V., Tanaka M., Tran L.P., Habu Y., Seki M.	Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.	Front Plant Sci	8	1001	2017		
44705	28687785	Mei J., Wang W., Peng S., Nie L.	Seed Pelleting with Calcium Peroxide Improves Crop Establishment of Direct-seeded Rice under Waterlogging Conditions.	Sci Rep	7(1)	4878	2017		
44706	28762322	Lim D.K., Long N.P., Mo C., Dong Z., Lim J., Kwon S.W.	Optimized Mass Spectrometry-Based Metabolite Extraction and Analysis for the Geographical Discrimination of White Rice (Oryza sativa L.): A Method Comparison Study.	J AOAC Int			2017		
44707	28526728	Yang L., Wu Y., Wang W., Mao B., Zhao B., Wang J.	Genetic Subtraction Profiling Identifies Candidate miRNAs Involved in Rice Female Gametophyte Abortion.	G3 (Bethesda)	7(7)	2281-2293	2017		
44708	28719243	Mgonja E.M., Park C.H., Kang H., Balimponya E.G., Opiyo S., Bellizzi M., Mutiga S.K., Rotich F., Ganeshan V.D., Mabagala R., Sneller C., Correll J., Zhou B., Talbot N.J., Mitchell T.K., Wang G.L.	Genotyping-by-Sequencing-Based Genetic Analysis of African Rice Cultivars and Association Mapping of Blast Resistance Genes Against Magnaporthe oryzae Populations in Africa.	Phytopathology	107(9)	1039-1046	2017		
44709	28687802	Zhu Y.J., Fan Y.Y., Wang K., Huang D.R., Liu W.Z., Ying J.Z., Zhuang J.Y.	Rice Flowering Locus T 1 plays an important role in heading date influencing yield traits in rice.	Sci Rep	7(1)	4918	2017		
44710	28753622	Wang Q., Han N., Dang C., Lu Z., Wang F., Yao H., Peng Y., Stanley D., Ye G.	Combined influence of Bt rice and rice dwarf virus on biological parameters of a non-target herbivore, Nephotettix cincticeps (Uhler) (Hemiptera: Cicadellidae).	PLoS ONE	12(7)	e0181258	2017		
44711	28746886	Guo L., Xiao Y., Zhu C., Wang S., Du X., Cui B.	In vitro enzymatic hydrolysis of amylopectins from rice starches.	Int. J. Biol. Macromol.			2017		
44712	28755293	Cao J., Yu Y., Huang J., Liu R., Chen Y., Li S., Liu J.	Genome re-sequencing analysis uncovers pathogenecity-related genes undergoing positive selection in Magnaporthe oryzae.	Sci China Life Sci	60(8)	880-890	2017		
44713	28687080	Thieme M., Lanciano S., Balzergue S., Daccord N., Mirouze M., Bucher E.	Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding.	Genome Biol.	18(1)	134	2017		
44714	28727805	Wada H., Masumoto-Kubo C., Tsutsumi K., Nonami H., Tanaka F., Okada H., Erra-Balsells R., Hiraoka K., Nakashima T., Hakata M., Morita S.	Turgor-responsive starch phosphorylation in Oryza sativa stems: A primary event of starch degradation associated with grain-filling ability.	PLoS ONE	12(7)	e0181272	2017	GBSSII,SBE1,SSIIB,_,GWD1,AMY2A	GBSS2,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2,,Amy2A*(RAmy2A), AMY1.5, AMYC2, RAmy2A, Amy4, Amy2A
44715	28761150	Singh S.P., Gruissem W., Bhullar N.K.	Single genetic locus improvement of iron, zinc and beta-carotene content in rice grains.	Sci Rep	7(1)	6883	2017		
44716	28670755	Nieves-Cordones M., Mohamed S., Tanoi K., Kobayashi N.I., Takagi K., Vernet A., Guiderdoni E., P?rin C., Sentenac H., V?ry AA.	Production of low-Cs(+) rice plants by inactivation of the K(+) transporter OsHAK1 with the CRISPR-Cas system.	Plant J.			2017		
44717	28677082	Lee S.Y., Kim Y.H., Lee G.S.	Mapping QTLs associated to germination stability following dry-heat treatment in rice seed.	3 Biotech	7(3)	220	2017		
44718	28729614	Zhang Z., Teng X., Ma W., Li F.	Knockdown of two Cadherin genes confers resistance to Cry2A and Cry1C in Chilo suppressalis.	Sci Rep	7(1)	5992	2017		
44719	28686687	Li S., Zuo Q., Wang X., Ma W., Jin X., Shi J., Ben-Gal A.	Characterizing roots and water uptake in a ground cover rice production system.	PLoS ONE	12(7)	e0180713	2017		
44720	28678349	Zhang D., Wu S., An X., Xie K., Dong Z., Zhou Y., Xu L., Fang W., Liu S., Liu S., Zhu T., Li J., Rao L., Zhao J., Wan X.	Construction of a multicontrol sterility system for a maize male-sterile line and hybrid seed production based on the ZmMs7 gene encoding a PHD-finger transcription factor.	Plant Biotechnol. J.			2017		
44721	28701756	Ogawa T., Kashima K., Yuki Y., Mejima M., Kurokawa S., Kuroda M., Okazawa A., Kiyono H., Ohta D.	Seed Metabolome Analysis of a Transgenic Rice Line Expressing cholera toxin B-subunit.	Sci Rep	7(1)	5196	2017		
44722	28680100	Zhan X., Shen Q., Wang X., Hong Y.	The Sulfoquinovosyltransferase-like Enzyme SQD2.2 is Involved in Flavonoid Glycosylation, Regulating Sugar Metabolism and Seed Setting in Rice.	Sci Rep	7(1)	4685	2017	_,_,PLS2	SQD2.1, OsSQD2.1,OsSQD2, SQD2, SQD2.2, OsSQD2.2,SQD2.3, OsSQD2.3
44723	28710280	Myrach T., Zhu A., Witte C.P.	The assembly of the plant Urease activation complex and the essential role of the Urease accessory protein G (UreG) in delivery of nickel to Urease.	J. Biol. Chem.	292(35)	14556-14565	2017		
44724	28710485	Zhang Z., Hu W., Shen G., Liu H., Hu Y., Zhou X., Liu T., Xing Y.	Alternative functions of Hd1 in repressing or promoting heading are determined by Ghd7 status under long-day conditions.	Sci Rep	7(1)	5388	2017		
44725	28738551	Zahoor, Sun D., Li Y., Wang J., Tu Y., Wang Y., Hu Z., Zhou S., Wang L., Xie G., Huang J., Alam A., Peng L.	Biomass saccharification is largely enhanced by altering wall polymer features and reducing silicon accumulation in rice cultivars harvested from nitrogen fertilizer supply.	Bioresour. Technol.	243	957-965	2017		
44726	28818376	Takaiwa F., Wakasa Y., Hayashi S., Kawakatsu T.	An overview on the strategies to exploit rice endosperm as production platform for biopharmaceuticals.	Plant Sci.	263	201-209	2017		
44727	28870292	Thapa S., Prasanna R., Ranjan K., Velmourougane K., Ramakrishnan B.	Nutrients and host attributes modulate the abundance and functional traits of phyllosphere microbiome in rice.	Microbiol. Res.	204	55-64	2017		
44728	28733852	Gan L., Zhu S., Zhao Z., Liu L., Wang X., Zhang Z., Zhang X., Wang J., Wang J., Guo X., Wan J.	Wax Crystal-Sparse Leaf 4, encoding a beta-ketoacyl-coenzyme A synthase 6, is involved in rice cuticular wax accumulation.	Plant Cell Rep.			2017	_	CER6/CUT1, CER6, CUT1, OsCER6, WSL4, KCS6, OsKCS6, CER6/CUT1/KCS6 
44729	28686018	Chang T., Li W., Ding Z., Cheng S., Liang K., Liu X., Bing T., Shangguan D.	Detection of G-Quadruplex Structures Formed by G-Rich Sequences from Rice Genome and Transcriptome Using Combined Probes.	Anal. Chem.	89(15)	8162-8169	2017		
44730	28682500	Zhang J., Yin K., Sun J., Gao J., Du Q., Li H., Qiu J.L.	Direct and tunable modulation of protein levels in rice and wheat with a synthetic small molecule.	Plant Biotechnol. J.			2017		
44731	28744302	Wu M., Li G., Li W., Liu J., Liu M., Jiang C., Li Z.	Nitrogen Fertilizer Deep Placement for Increased grain yield and Nitrogen Recovery Efficiency in Rice Grown in Subtropical China.	Front Plant Sci	8	1227	2017		
44732	28740253	Xu H.X., He X.C., Zheng X.S., Zhou X.J., Lin Y.J., Lu Z.X.	Effects of Transgenic Rice Infected with SRBSDV on Bt expression and the Ecological Fitness of Non-vector Brown Planthopper Nilaparvata lugens.	Sci Rep	7(1)	6328	2017		
44733	28747923	Jiang N., Shi S., Shi H., Khanzada H., Wassan G.M., Zhu C., Peng X., Yu Q., Chen X., He X., Fu J., Hu L., Xu J., Ouyang L., Sun X., Zhou D., He H., Bian J.	Mapping QTL for Seed Germinability under low temperature Using a New High-Density Genetic Map of Rice.	Front Plant Sci	8	1223	2017		
44734	28818380	Yan S., Li S., Zhai G., Lu P., Deng H., Zhu S., Huang R., Shao J., Tao Y., Zou G.	Molecular cloning and expression analysis of duplicated Polyphenol oxidase genes reveal their functional differentiations in sorghum.	Plant Sci.	263	23-30	2017		
44735	28754953	Yang X., Li L., Jiang X., Wang W., Cai X., Su J., Wang F., Lu B.R.	Genetically engineered rice endogenous 5-enolpyruvoylshikimate-3-phosphate synthase (EPSPS) transgene alters phenology and fitness of crop-wild hybrid offspring.	Sci Rep	7(1)	6834	2017		
44736	28838125	Xu Y., Liu S., Liu Y., Ling S., Chen C., Yao J.	HOTHEAD-Like HTH1 is Involved in Anther Cutin Biosynthesis and is Required for pollen Fertility in Rice.	Plant Cell Physiol.	58(7)	1238-1248	2017	_,NP1 ,_,_,_,HTH1,_	,OS-ACE, OsNP1 ,ONI3,,,OsHTH1,
44737	28743949	Sun W., Hui Xu X., Lu X., Xie L., Bai B., Zheng C., Sun H., He Y., Xie X.Z.	The Rice Phytochrome Genes, PHYA and phyB, Have Synergistic Effects on Anther Development and pollen Viability.	Sci Rep	7(1)	6439	2017		
44738	28680066	Zhaolei L., Naishun B., Jun C., Xueping C., Manqiu X., Feng W., Zhiping S., Changming F.	Effects of long-term cultivation of transgenic Bt rice (Kefeng-6) on soil microbial functioning and C cycling.	Sci Rep	7(1)	4647	2017		
44739	28683715	Schmidt M., Van Bel M., Woloszynska M., Slabbinck B., Martens C., De Block M., Coppens F., Van Lijsebettens M.	Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions.	BMC Plant Biol.	17(1)	115	2017		
44740	28621888	Huang K., Wang D., Duan P., Zhang B., Xu R., Li N., Li Y.	WIDE AND THICK GRAIN 1, which encodes an otubain-like protease with deubiquitination activity, influences grain size and shape in rice.	Plant J.	91(5)	849-860	2017	WTG1	OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1
44741	28678533	Lin S., Yang T., Zhu S., Wang J., Ni W.	A method for screening copper tolerant rice (Oryza sativa L.) cultivars based on hydroponic experiments and cluster analysis.	Int J Phytoremediation		0	2017		
44742	28710696	Lee H.S., Sasaki K., Kang J.W., Sato T., Song W.Y., Ahn S.N.	Mesocotyl Elongation is Essential for Seedling Emergence Under Deep-Seeding Condition in Rice.	Rice (N Y)	10(1)	32	2017		
44743	28674938	Valdameri G., Alberton D., Moure V.R., Kokot T.B., Kukolj C., Brusamarello-Santos LCC., Monteiro R.A., Pedrosa F.O., de Souza EM.	Herbaspirillum rubrisubalbicans, a mild pathogen impairs growth of rice by augmenting ethylene levels.	Plant Mol. Biol.	94(6)	625-640	2017		
44744	28730412	Zhou Y., Tao Y., Zhu J., Miao J., Liu J., Liu Y., Yi C., Yang Z., Gong Z., Liang G.	GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety.	Rice (N Y)	10(1)	34	2017	D11	d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
44745	28798764	Lou Q., Chen L., Mei H., Xu K., Wei H., Feng F., Li T., Pang X., Shi C., Luo L., Zhong Y.	Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.).	Front Plant Sci	8	1314	2017		
44746	28791031	Feng H., Chen G., Xiong L., Liu Q., Yang W.	Accurate Digitization of the Chlorophyll Distribution of Individual Rice Leaves Using Hyperspectral Imaging and an Integrated Image Analysis Pipeline.	Front Plant Sci	8	1238	2017		
44747	28775736	Das G., Patra J.K., Baek K.H.	Corrigendum: Insight into MAS: A Molecular Tool for Development of Stress Resistant and Quality of Rice through Gene Stacking.	Front Plant Sci	8	1321	2017		
44748	28680158	Rashid M.M., Ahmed N., Jahan M., Islam K.S., Nansen C., Willers J.L., Ali M.P.	Higher Fertilizer Inputs Increase Fitness Traits of Brown Planthopper in Rice.	Sci Rep	7(1)	4719	2017		
44749	28643516	Navarro-Reig M., Jaumot J., Baglai A., Viv?-Truyols G., Schoenmakers P.J., Tauler R.	Untargeted Comprehensive Two-Dimensional Liquid Chromatography Coupled with High-Resolution Mass Spectrometry Analysis of Rice Metabolome Using Multivariate Curve Resolution.	Anal. Chem.	89(14)	7675-7683	2017		
44750	28718009	Omisun T., Sahoo S., Saha B., Panda S.K.	Relative salinity tolerance of rice cultivars native to North East India: a physiological, biochemical and molecular perspective.	Protoplasma			2017		
44751	28758833	Yu M., Yau C.P., Yip W.K.	The Differentiated Localized Rice Ethylene Receptors OsERS1 and OsETR2 and their Potential Role during Submergence.	Plant Signal Behav		0	2017		
44752	28744298	Landi S., Hausman J.F., Guerriero G., Esposito S.	Poaceae vs. Abiotic Stress: Focus on Drought and Salt Stress, Recent Insights and Perspectives.	Front Plant Sci	8	1214	2017		
44753	28688359	Zhang L., Yang Q., Wang S., Li W., Jiang S., Liu Y.	Influence of silicon treatment on antimony uptake and translocation in rice genotypes with different radial oxygen loss.	Ecotoxicol. Environ. Saf.	144	572-577	2017		
44754	28751884	Esquivel B.D., White T.C.	Accumulation of Azole Drugs in the Fungal Plant Pathogen Magnaporthe oryzae Is the Result of Facilitated Diffusion Influx.	Front Microbiol	8	1320	2017		
44755	28758876	Ueno Y., Matsushita A., Inoue H., Yoshida R., Jiang C.J., Takatsuji H.	WRKY45 phosphorylation at threonine 266 acts negatively on WRKY45-dependent blast resistance in rice.	Plant Signal Behav		0	2017		
44756	28769823	Zhu X.F., Zhao X.S., Wang B., Wu Q., Shen R.F.	Elevated Carbon Dioxide Alleviates Aluminum Toxicity by Decreasing Cell Wall Hemicellulose in Rice (Oryza sativa).	Front Physiol	8	512	2017		
44757	28724910	Guzman M.K., Parween S., Butardo V.M., Alhambra C.M., Anacleto R., Seiler C., Bird A.R., Chow C.P., Sreenivasulu N.	Investigating glycemic potential of rice by unraveling compositional variations in mature grain and starch mobilization patterns during seed germination.	Sci Rep	7(1)	5854	2017		
44758	28702689	Auler P.A., do Amaral MN., Rodrigues G.D.S., Benitez L.C., da Maia LC., Souza G.M., Braga E.J.B.	Molecular responses to recurrent drought in two contrasting rice genotypes.	Planta			2017		
44759	28686596	Li X., Guo Z., Lv Y., Cen X., Ding X., Wu H., Li X., Huang J., Xiong L.	Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study.	PLoS Genet.	13(7)	e1006889	2017		
44760	28705931	Wagner R.H., Savir-Baruch B., Halama J.R., Venu M., Gabriel M.S., Bova D.	Proof of Concept: Design and Initial Evaluation of a Device to Measure Gastrointestinal Transit Time.	J Nucl Med Technol	45(3)	230-235	2017		
44761	28747889	Dorairaj D., Ismail M.R.	Distribution of Silicified Microstructures, Regulation of Cinnamyl Alcohol Dehydrogenase and Lodging Resistance in Silicon and Paclobutrazol Mediated Oryza sativa.	Front Physiol	8	491	2017		
44762	28725262	Biswal A.K., Tan L., Atmodjo M.A., DeMartini J., Gelineo-Albersheim I., Hunt K., Black I.M., Mohanty S.S., Ryno D., Wyman C.E., Mohnen D.	Comparison of four glycosyl residue composition methods for effectiveness in detecting sugars from cell walls of dicot and grass tissues.	Biotechnol Biofuels	10	182	2017		
44763	28775730	Pang Y., Chen K., Wang X., Wang W., Xu J., Ali J., Li Z.	Simultaneous Improvement and Genetic Dissection of salt tolerance of Rice (Oryza sativa L.) by Designed QTL Pyramiding.	Front Plant Sci	8	1275	2017		
44764	28861103	Wang S., Cao M., Ma X., Chen W., Zhao J., Sun C., Tan L., Liu F.	Integrated RNA Sequencing and QTL Mapping to Identify Candidate Genes from Oryza rufipogon Associated with salt tolerance at the Seedling Stage.	Front Plant Sci	8	1427	2017		
44765	28809396	Song X., Lu Z., Yu H., Shao G., Xiong J., Meng X., Jing Y., Liu G., Xiong G., Duan J., Yao X.F., Liu C.M., Li H., Wang Y., Li J.	IPA1 functions as a downstream transcription factor repressed by D53 in strigolactone signaling in rice.	Cell Res.	27(9)	1128-1141	2017	D53,WFP	D53(D K3), DK3, Dwf34, SMXL6/7/8,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
44766	28802080	Sun Y., Wu Y., Yang C., Sun S., Lin X., Liu L., Xu C., Wendel J.F., Gong L., Liu B.	Segmental allotetraploidy generates extensive homeologous expression rewiring and phenotypic diversity at the population level in rice.	Mol. Ecol.			2017		
44767	28868059	Huang L.Y., Lin C.W., Lee R.H., Chiang C.Y., Wang Y.C., Chang C.H., Huang H.J.	Integrating Early Transcriptomic Responses to Rhizotoxins in Rice (Oryza sativa. L.) Reveals Key Regulators and a Potential Early Biomarker of Cadmium Toxicity.	Front Plant Sci	8	1432	2017		
44768	28810845	Park D., Park S.H., Ban Y.W., Kim Y.S., Park K.C., Kim N.S., Kim J.K., Choi I.Y.	A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data.	BMC Biotechnol.	17(1)	67	2017		
44769	28848243	Liu C., Cheng Y.J., Wang J.W., Weigel D.	Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis.	Nat Plants			2017		
44770	28861102	Zhang J., Chen L., Fu C., Wang L., Liu H., Cheng Y., Li S., Deng Q., Wang S., Zhu J., Liang Y., Li P., Zheng A.	Comparative Transcriptome Analyses of Gene Expression Changes Triggered by Rhizoctonia solani AG1 IA Infection in Resistant and Susceptible Rice Varieties.	Front Plant Sci	8	1422	2017		
44771	28841500	Lin L., Gao M., Qiu W., Wang D., Huang Q., Song Z.	Reduced arsenic accumulation in indica rice (Oryza sativa L.) cultivar with ferromanganese oxide impregnated biochar composites amendments.	Environ. Pollut.	231(Pt 1)	479-486	2017		
44772	28805257	Li G., Li X., Wang Y., Mi J., Xing F., Zhang D., Dong Q., Li X., Xiao J., Zhang Q., Ouyang Y.	Three representative inter and intra-subspecific crosses reveal the genetic architecture of reproductive isolation in rice.	Plant J.			2017		
44773	28815858	Akimoto-Tomiyama C., Tanabe S., Kajiwara H., Minami E., Ochiai H.	Loss of chloroplast localized protein phosphatase 2Cs in Arabidopsis thaliana leads to enhancement of the plant immunity and resistance to Xanthomonas campestris pv. campestris infection.	Mol. Plant Pathol.			2017		
44774	28863212	Zhou K., Xia J., Wang Y., Ma T., Li Z.	A Young Seedling stripe2 phenotype in rice is caused by mutation of a chloroplast-localized nucleoside diphosphate kinase 2 required for chloroplast biogenesis.	Genet. Mol. Biol.		0	2017	NDPK3,YSS2,_	OsNDPK3,OsNDPK2, NDPK2, BIP114,OsNDPK1, NDK, rNDK, NDK1, NDKR, NDK-1
44775	28785299	Cao Z., Mou R., Cao Z., Lin X., Ma Y., Zhu Z., Chen M.	Quantitation of glutathione S-transferases in rice (Oryza sativa L.) roots exposed to cadmium by liquid chromatography-tandem mass spectrometry using isotope-labeled wing peptides as an internal standard.	Plant Methods	13	64	2017		
44776	28861736	Prahalada G.D., Shivakumar N., Lohithaswa H.C., Sidde Gowda DK., Ramkumar G., Kim S.R., Ramachandra C., Hittalmani S., Mohapatra T., Jena K.K.	Identification and fine mapping of a new gene, BPH31 conferring resistance to brown planthopper biotype 4 of India to improve rice, Oryza sativa L.	Rice (N Y)	10(1)	41	2017	BPH31	Bph31
44777	28821602	Li G., Wu Y., Liu G., Xiao X., Wang P., Gao T., Xu M., Han Q., Wang Y., Guo T., Kang G.	Large-scale proteomics combined with transgenic experiments demonstrates an important role of jasmonic acid&nbsp;in potassium&nbsp;deficiency response in wheat and rice.	Mol. Cell Proteomics			2017	AOS2	OsAOS2, CYP74A2, OsAOS, OsAOS1
44778	28843766	Van De Velde K., Ruelens P., Geuten K., Rohde A., Van Der Straeten D.	Exploiting DELLA Signaling in Cereals.	Trends Plant Sci.			2017		
44779	28843203	Chen Z., Tang Y.T., Yao A.J., Cao J., Wu Z.H., Peng Z.R., Wang S.Z., Xiao S., Baker A.J.M., Qiu R.L.	Mitigation of Cd accumulation in paddy rice (Oryza sativa L.) by Fe fertilization.	Environ. Pollut.	231(Pt 1)	549-559	2017		
44780	28766258	Inoue H., Nakamura M., Mizubayashi T., Takahashi A., Sugano S., Fukuoka S., Hayashi N.	Panicle blast 1 (Pb1) resistance is dependent on at least four QTLs in the rice genome.	Rice (N Y)	10(1)	36	2017		
44781	28848592	Lee G.A., Jeon Y.A., Lee H.S., Hyun D.Y., Lee J.R., Lee M.C., Lee S.Y., Ma K.H., Koh H.J.	New Genetic Loci Associated with Preharvest Sprouting and Its Evaluation Based on the Model Equation in Rice.	Front Plant Sci	8	1393	2017		
44782	28677493	Wang X., Jia Y., Wamishe Y., Jia M.H., Valent B.	Dynamic Changes in the Rice Blast Population in the United States Over Six Decades.	Mol. Plant Microbe Interact.		MPMI04170101R	2017		
44783	28805492	Sakuraba Y., Kim E.Y., Paek N.C.	Roles of rice PHYTOCHROME-Interacting Factor-Like1 (OsPIL1) in leaf senescence.	Plant Signal Behav		0	2017		
44784	28841686	Kim J., Lee H.J., Jung Y.J., Kang K.K., Tyagi W., Kovach M., Sweeney M., McCouch S., Cho Y.G.	Functional properties of an alternative, tissue-specific promoter for rice NADPH-dependent dihydroflavonol reductase.	PLoS ONE	12(8)	e0183722	2017		
44785	28790353	Tiwari I.M., Jesuraj A., Kamboj R., Devanna B.N., Botella J.R., Sharma T.R.	Host Delivered RNAi, an efficient approach to increase rice resistance to sheath blight pathogen (Rhizoctonia solani).	Sci Rep	7(1)	7521	2017		
44786	28821745	Daygon V.D., Calingacion M., Forster L.C., Voss J.J., Schwartz B.D., Ovenden B., Alonso D.E., McCouch S.R., Garson M.J., Fitzgerald M.A.	Metabolomics and genomics combine to unravel the pathway for the presence of fragrance in rice.	Sci Rep	7(1)	8767	2017		
44787	28555318	Wang L., Dong Q., Zhu Q., Tang N., Jia S., Xi C., Zhao H., Han S., Wang Y.	Conformational Characteristics of Rice Hexokinase OsHXK7 as a Moonlighting Protein involved in Sugar Signalling and Metabolism.	Protein J.	36(4)	249-256	2017		
44788	28762002	Khalili Ghadikolaei K., Akbari Noghabi K., Shahbani Zahiri H.	Development of a bifunctional xylanase-cellulase chimera with enhanced activity on rice and barley straws using a modular xylanase and an endoglucanase procured from camel rumen metagenome.	Appl. Microbiol. Biotechnol.			2017		
44789	28825710	Panja S., Hua B., Zegarra D., Ha T., Woodson S.A.	Metals induce transient folding and activation of the twister ribozyme.	Nat. Chem. Biol.			2017		
44790	28637286	Ritchey L.E., Su Z., Tang Y., Tack D.C., Assmann S.M., Bevilacqua P.C.	Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo.	Nucleic Acids Res.	45(14)	e135	2017		
44791	28789632	Zhang Z., Li X., Cui L., Meng S., Ye N., Peng X.	Catalytic and functional aspects of different isozymes of Glycolate oxidase in rice.	BMC Plant Biol.	17(1)	135	2017		
44792	28855911	Zarei A., Brikis C.J., Bajwa V.S., Chiu G.Z., Simpson J.P., DeEll J.R., Bozzo G.G., Shelp B.J.	Plant Glyoxylate/Succinic Semialdehyde Reductases: Comparative Biochemical Properties, Function during Chilling Stress, and Subcellular Localization.	Front Plant Sci	8	1399	2017	GLYR1,GLYR2	OsGLYR1,OsGLYR2
44793	28871266	Yadav S., Singh U.M., Naik S.M., Venkateshwarlu C., Ramayya P.J., Raman K.A., Sandhu N., Kumar A.	Molecular Mapping of QTLs Associated with Lodging Resistance in Dry Direct-Seeded Rice (Oryza sativa L.).	Front Plant Sci	8	1431	2017		
44794	28821860	Kumar N., Dubey A.K., Upadhyay A.K., Gautam A., Ranjan R., Srikishna S., Sahu N., Behera S.K., Mallick S.	GABA accretion reduces Lsi-1 and Lsi-2 gene expressions and modulates physiological responses in Oryza sativa to provide tolerance towards arsenic.	Sci Rep	7(1)	8786	2017		
44795	28695678	Salt D.E.	Would the real arsenate reductase please stand up?	New Phytol.	215(3)	926-928	2017		
44796	28829777	Qin H., Zhang Z., Wang J., Chen X., Wei P., Huang R.	The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development.	PLoS Genet.	13(8)	e1006955	2017	COW1,EIL1	OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a
44797	28814283	Li Q., Yang A., Zhang W.H.	Comparative studies on tolerance of rice genotypes differing in their tolerance to moderate salt stress.	BMC Plant Biol.	17(1)	141	2017		
44798	28843032	Meng Q., Li X., Zhu W., Yang L., Liang W., Dreni L., Zhang D.	Regulatory network and genetic interactions established by OsMADS34 in rice inflorescence and spikelet morphogenesis.	J Integr Plant Biol			2017		
44799	28832544	Zhao W., Cheng Y.H., Zhang C., Shen X.J., You Q.B., Guo W., Li X., Song X.J., Zhou X.A., Jiao Y.Q.	Genome-Wide Identification and Characterization of the GmSnRK2 Family in Soybean.	Int J Mol Sci	18(9)		2017		
44800	28853048	Zhou H., Xia D., Zeng J., Jiang G., He Y.	Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross.	Rice (N Y)	10(1)	39	2017	SD1,S5,DEP1,GHD7,HD5	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,S5-3, S5-4,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H
44801	28871269	Chen Z., Cheng Q., Hu C., Guo X., Chen Z., Lin Y., Hu T., Bellizzi M., Lu G., Wang G.L., Wang Z., Chen S., Wang F.	A Chemical-Induced, Seed-Soaking Activation Procedure for Regulated Gene Expression in Rice.	Front Plant Sci	8	1447	2017		
44802	28857351	Ma H., Chen J., Zhang Z., Ma L., Yang Z., Zhang Q., Li X., Xiao J., Wang S.	MAPK kinase 10.2 Promotes Disease Resistance and drought tolerance by Activating Different MAPKs in rice.	Plant J.			2017	MSRMK2,MKK10-3,MKK10-2,MAPK6,MKK10-1	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,MPKK10.3,OsMKK10-2, MKK10-2D, OsMPKK10-2, MPKK10-2, OsMPKK10-2D, MPKK10-2D, MPKK10.2,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsMKK10-1, MPKK10.1 
44803	28842593	Ojha A., Sinha D.K., Padmakumari A.P., Bentur J.S., Nair S.	Bacterial Community Structure in the Asian Rice Gall Midge Reveals a Varied Microbiome Rich in Proteobacteria.	Sci Rep	7(1)	9424	2017		
44804	28835208	Chen R., Cheng Y., Han S., Van Handel B., Dong L., Li X., Xie X.	Whole genome sequencing and comparative transcriptome analysis of a novel seawater adapted, salt-resistant rice cultivar - sea rice 86.	BMC Genomics	18(1)	655	2017		
44805	28801586	Krishnamurthy S.L., Sharma P.C., Sharma D.K., Ravikiran K.T., Singh Y.P., Mishra V.K., Burman D., Maji B., Mandal S., Sarangi S.K., Gautam R.K., Singh P.K., Manohara K.K., Marandi B.C., Padmavathi G., Vanve P.B., Patil K.D., Thirumeni S., Verma O.P., Khan A.H., Tiwari S., Geetha S., Shakila M., Gill R., Yadav V.K., Roy S.K.B., Prakash M., Bonifacio J., Ismail A., Gregorio G.B., Singh R.K.	Identification of mega-environments and rice genotypes for general and specific adaptation to saline and alkaline stresses in India.	Sci Rep	7(1)	7968	2017		
44806	28775653	Swain P., Raman A., Singh S.P., Kumar A.	Breeding drought tolerant rice for shallow rainfed ecosystem of eastern India.	Field Crops Res.	209	168-178	2017		
44807	28805500	Kawasaki T., Yamada K., Yoshimura S., Yamaguchi K.	Chitin receptor-mediated activation of MAP kinases and ROS production in rice and Arabidopsis.	Plant Signal Behav		0	2017		
44808	28779340	Xiao G., Borja F.N., Mauleon R., Padilla J., Telebanco-Yanoria MJ., Yang J., Lu G., Dionisio-Sese M., Zhou B.	Identification of resistant germplasm containing novel resistance genes at or tightly linked to the Pi2/9 locus conferring broad-spectrum resistance against rice blast.	Rice (N Y)	10(1)	37	2017		
44809	28797959	Gupta A., Nair A., Ballal A., Chittela R.K.	C-terminal residues of rice translin are essential for octamer formation and nucleic acid binding.	Plant Physiol. Biochem.	118	600-608	2017		
44810	28811584	Mahakham W., Sarmah A.K., Maensiri S., Theerakulpisut P.	Nanopriming technology for enhancing germination and starch metabolism of aged rice seeds using phytosynthesized silver nanoparticles.	Sci Rep	7(1)	8263	2017		
44811	28850869	Hare V., Chowdhary P., Baghel V.S.	Influence of bacterial strains on Oryza sativa grown under arsenic tainted soil: Accumulation and detoxification response.	Plant Physiol. Biochem.	119	93-102	2017		
44812	28793366	Lee K., Choi G.H., Back K.	Cadmium-induced melatonin synthesis in rice requires light, hydrogen peroxide, and nitric oxide: Key regulatory roles for tryptophan decarboxylase and caffeic acid O-methyltransferase.	J. Pineal Res.			2017		
44813	28787541	Wang Y.P., Tang S.Q., Chen H.Z., Wu Z.F., Zhang H., Duan E.C., Shi Q.H., Wu Z.M.	Identification and molecular mapping of indica high-tillering dwarf mutant htd4, a mild phenotype allelic mutant of D14 in rice (Oryza sativa L.).	Plant Biol (Stuttg)			2017	D14,D3,D17,D10,D27,D53	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,d27(d t), dt, dwf23, d27, OsD27,D53(D K3), DK3, Dwf34, SMXL6/7/8
44814	28829772	Yang C., Shen W., He Y., Tian Z., Li J.	Correction: OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.	PLoS Genet.	13(8)	e1006970	2017		
44815	28794433	Zhen G., Qin P., Liu K.Y., Nie D.Y., Yang Y.Z., Deng X.W., He H.	Genome-wide dissection of heterosis for yield traits in two-line hybrid rice populations.	Sci Rep	7(1)	7635	2017		
44816	28592558	Nguyen G.N., Yamagata Y., Shigematsu Y., Watanabe M., Miyazaki Y., Doi K., Tashiro K., Kuhara S., Kanamori H., Wu J., Matsumoto T., Yasui H., Yoshimura A.	Duplication and Loss of Function of Genes Encoding RNA polymerase III Subunit C4 Causes Hybrid Incompatibility in Rice.	G3 (Bethesda)	7(8)	2565-2575	2017	DGS2,DGS1	RPC4a, RPC4b, RPC4c, RPC4d, RPC4e,OsRPC53, RPC4 
44817	28856618	Thomson M.J., Singh N., Dwiyanti M.S., Wang D.R., Wright M.H., Perez F.A., DeClerck G., Chin J.H., Malitic-Layaoen GA., Juanillas V.M., Dilla-Ermita CJ., Mauleon R., Kretzschmar T., McCouch S.R.	Large-scale deployment of a rice 6?K SNP array for genetics and breeding applications.	Rice (N Y)	10(1)	40	2017		
44818	28821824	Wu Y., Lv W., Hu L., Rao W., Zeng Y., Zhu L., He Y., He G.	Identification and analysis of brown planthopper-responsive microRNAs in resistant and susceptible rice plants.	Sci Rep	7(1)	8712	2017		
44819	28832496	Mu Q., Zhang W., Zhang Y., Yan H., Liu K., Matsui T., Tian X., Yang P.	iTRAQ-Based Quantitative Proteomics Analysis on Rice Anther Responding to High Temperature.	Int J Mol Sci	18(9)		2017		
44820	28830338	Xue W., Yan J., Zhao G., Jiang Y., Cheng J., Cattivelli L., Tondelli A.	A major QTL on chromosome 7HS controls the response of barley seedling to salt stress in the Nure?~?Tremois population.	BMC Genet.	18(1)	79	2017		
44821	28798310	Tian J.C., Romeis J.R., Liu K., Zhang F.C., Zheng X.S., Xu H.X., Chen G.H., He X.C., Lu Z.X.	Assessing the effects of Cry1C rice and Cry2A rice to Pseudogonatopus flavifemur, a parasitoid of rice planthoppers.	Sci Rep	7(1)	7838	2017		
44822	28811335	Liu J., Huang J., Guo H., Lan L., Wang H., Xu Y., Yang X., Li W., Tong H., Xiao Y., Pan Q., Qiao F., Raihan M.S., Liu H., Zhang X., Yang N., Wang X., Deng M., Jin M., Zhao L., Luo X., Zhou Y., Li X., Zhan W., Liu N., Wang H., Chen G., Li Q., Yan J.	The conserved and unique genetic architecture of kernel size and weight in maize and rice.	Plant Physiol.			2017		
44823	28817683	Sales E., Viruel J., Domingo C., Marqu?s L.	Genome wide association analysis of cold tolerance at germination in temperate japonica rice (Oryza sativa L.) varieties.	PLoS ONE	12(8)	e0183416	2017		
44824	28861748	Yang S.Y., Wu Y.S., Chen C.T., Lai M.H., Yen H.M., Yang C.Y.	Physiological and molecular responses of seedlings of an upland rice ('Tung Lu 3') to total submergence compared to those of a submergence-tolerant lowland rice ('FR13A').	Rice (N Y)	10(1)	42	2017		
44825	28785094	Barron A., Turner M., Beeching L., Bellwood P., Piper P., Grono E., Jones R., Oxenham M., Kien N.K.T., Senden T., Denham T.	MicroCT reveals domesticated rice (Oryza sativa) within pottery sherds from early Neolithic sites (4150-3265?cal BP) in Southeast Asia.	Sci Rep	7(1)	7410	2017		
44826	28861807	Sobhy I.S., Miyake A., Shinya T., Galis I.	Oral Secretions Affect HIPVs Induced by Generalist (Mythimna loreyi) and Specialist (Parnara guttata) Herbivores in Rice.	J. Chem. Ecol.			2017		
44827	28801742	Ma Z., Ongena M., H?fte M.	The cyclic lipopeptide orfamide induces systemic resistance in rice to Cochliobolus miyabeanus but not to Magnaporthe oryzae.	Plant Cell Rep.			2017		
44828	28592557	Zhang L., Lou J., Foley M.E., Gu X.Y.	Comparative Mapping of seed dormancy Loci Between Tropical and Temperate Ecotypes of Weedy Rice (Oryza sativa L.).	G3 (Bethesda)	7(8)	2605-2614	2017		
44829	28834651	Dauer J., Hulting A., Carlson D., Mankin L., Harden J., Mallory-Smith C.	Gene flow from single and stacked herbicide-resistant rice (Oryza sativa): modeling occurrence of multiple herbicide-resistant weedy rice.	Pest Manag. Sci.			2017		
44830	28779704	Moulick D., Santra S.C., Ghosh D.	Seed priming with Se alleviate As induced phytotoxicity during germination and seedling growth by restricting As translocation in rice (Oryza sativa L c.v. IET-4094).	Ecotoxicol. Environ. Saf.	145	449-456	2017		
44831	28847366	Cho J., Paszkowski J.	Regulation of rice root development by a retrotransposon acting as a microRNA sponge.	Elife	6		2017		
44832	28838812	Braga L.F., Oliveira F.A., Couto EAPD., Santos KFDN., Ferreira E.P.B., Martin-Didonet CCG.	Polyphasic characterization of bacteria obtained from upland rice cultivated in Cerrado soil.	Braz. J. Microbiol.			2017		
44833	28821707	Lee S., Jeong H., Lee S., Lee J., Kim S.J., Park J.W., Woo H.R., Lim P.O., An G., Nam H.G., Hwang D.	Molecular bases for differential aging programs between flag and second leaves during grain-filling in rice.	Sci Rep	7(1)	8792	2017		
44834	28859136	Cao A., Jin J., Li S., Wang J.	Integrated analysis of mRNA and miRNA expression profiling in rice backcrossed progenies (BC2F12) with different plant height.	PLoS ONE	12(8)	e0184106	2017		
44835	28555319	Ji L., Zhou P., Zhu Y., Liu F., Li R., Qiu Y.	Proteomic Analysis of Rice Seedlings Under Cold Stress.	Protein J.	36(4)	299-307	2017		
44836	28795219	Jena K.K., Hechanova S.L., Verdeprado H., Prahalada G.D., Kim S.R.	Development of 25 near-isogenic lines (NILs) with ten BPH resistance genes in rice (Oryza sativa L.): production, resistance spectrum, and molecular analysis.	Theor. Appl. Genet.			2017		
44837	28786735	Sagor G.H.M., Kusano T., Berberich T.	Identification of the actual coding region for polyamine oxidase 6 from rice (OsPAO6) and its partial characterization.	Plant Signal Behav		0	2017		
44838	15720083	Yang B., Sugio A., Frank F White	Avoidance of host recognition by alterations in the repetitive and C-terminal regions of AvrXa7, a type III effector of Xanthomonas oryzae pv. oryzae.	Mol. Plant Microbe Interact.	18(2)	142-9	2005	XA7	Xa7
44839	15256004	Fatima Cvrckov?, Marian Novotn?, Denisa P?ckov?, Viktor Z?rsk?	Formin homology 2 domains occur in multiple contexts in angiosperms.	BMC Genomics	5(1)	44	2004	_,_,_,_,_,_,_,_,DW2,_,_,_,_,_,BUI1,_	OsFH12, FH12,OsFH4, FH4,OsFH6, FH6,OsFH14, FH14,OsFH1, FH1,OsFH16, FH16,OsFH7, FH7,OsFH8, FH8,dw2(fh2), dw2, fh2, FH2, OsFH2,OsFH13, FH13,OsFH3, FH3,OsFH10, FH10,OsFH9, FH9,OsFH15, FH15,BUI1, FH5, FH5/BUI1, RMD, OsFH5, FH5/RMD ,OsSTA198, STA198, OsFH11, FH11
44840	0	Yanga W., Lub Z., Xionga Y., Yaoa J.	Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice	The Crop Journal	5(1)	21-31	2017	HAP2A,HAP3B,HAP2K,HAP2I,HAP2H,HAP2J,HAP3F,HAP5F,HD5,HAP5J,HAP5G,HAP2C,HAP2E,HAP5K,HAP5C,HAP3C,HAP3E,HAP3J,HAP2D,HAP2G,HAP5A,HAP2B,HAP3A,HAP3G,HAP5E,HAP5B,HAP5L,HAP5D,HAP3K,HAP3I,HAP5H,HAP3D,HAP2F,HAP5I	OsHAP2A, NF-YA, CBF-B, NF-YA7, OsNF-YA7, NFYA7,OsHAP3B, OsNF-YB-3, NFYB3, OsNF-YB4, NF-YB4, NFYB4, OsHAP3C, HAP3C,OsHAP2K, NF-YA11, OsNF-YA11, NFYA11,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsHAP2H, NF-YA, CBF-B, NF-YA3, OsNF-YA3, NFYA3,OsHAP2J, NF-YA, CBF-B, NF-YA5, OsNF-YA5, NFYA5,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsHAP5F, NF-YC, CBF-C, OsNF-YC5, Os-NF-YC5, NF-YC5, NFYC5,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsHAP5J, OsNF-YC8, NF-YC8, NFYC8,OsHAP5G, NF-YC, CBF-C, OsNF-YC3, Os-NF-YC3, NF-YC3, NFYC3,OsHAP2C, NF-YA, CBF-B, NF-YA1, OsNF-YA1, NFYA1,OsHAP2E, NF-YA, CBF-B, NF-YA2, OsNF-YA2, NFYA2,OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsHAP5C, NF-YC, CBF-C, OsNF-YC2, Os-NF-YC2, NF-YC2, NFYC2, OsNF-YC4-1, NF-YC4-1,OsHAP3C, OsNF-YB-4, NFYB4, OsNF-YB3, NF-YB3, NFYB3, OsHAP3B, HAP3B,OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP3J, NF-YB, CBF-A, OsNF-YB5, NF-YB5, NF-YB5,OsHAP2D, NF-YA, CBF-B, NF-YA4, OsNF-YA4, NFYA4,OsHAP2G, NF-YA, CBF-B, NF-YA6, OsNF-YA6, NFYA6,OsHAP5A, NF-YC, CBF-C, OsNF-YC1, Os-NF-YC1, NF-YC1, NFYC1 , OsNF-YC4-2, NF-YC4-2,OsHAP2B, NF-YA, CBF-B, NF-YA9, OsNF-YA9, NFYA9,OsHAP3A,OsNF-YB-2, NFYB2, NF-YB2,OsHAP3G, NF-YB, CBF-A, OsNF-YB6, NF-YB6, NFYB6,OsHAP5E, NF-YC, CBF-C, OsNF-YC7, Os-NF-YC7, NF-YC7, NFYC7,OsHAP5B, NF-YC, CBF-C, OsNF-YC4, Os-NF-YC4, NF-YC4, NFYC4, OsNF-YC4-3, NF-YC4-3,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsHAP5D, NF-YC, CBF-C, OsNF-YC6, Os-NF-YC6, NF-YC6, NFYC6,OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP3I, NF-YB, CBF-A, NF-YB8, OsNF-YB8, NFYB8,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10
44841	12773632	Ki-Hong Jung, Hur J., Choong-Hwan Ryu, Choi Y., Yong-Yoon Chung, Miyao A., Hirochika H., An G.	Characterization of a rice chlorophyll-deficient mutant using the T-DNA gene-trap system.	Plant Cell Physiol.	44(5)	463-72	2003	_	OsChlH, ChlH, CHLH, OsCHLH
44842	0	Fujita N.	Starch Biosynthesis in Rice Endosperm	AGri-Bioscience Monographs	4(1)	1-18	2014	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
44843	0	Hyun Yeong Kim, Eun-Hye Choi, Myung Ki Min, Hwang H., Seok-Jun Moon, Yoon I., Myung-Ok Byun	Differential gene expression of two outward-rectifying shaker-like potassium channels OsSKOR and OsGORK in rice	Journal of Plant Biology	58(4)	230-235	2015	GORK ,SKOR 	OsGORK, OsK5.2, K5.2,OsSKOR, OsK5.1, K5.1
44844	0	Chang-Xin Fang, Qing-Shui Wang, Yu Y., Qing-Mao Li, Hai-Li Zhang, Xing-Chun Wu, Chen T., Wen-Xiong Lin	Suppression and overexpression of Lsi1 induce differential gene expression in rice under ultraviolet radiation	Plant Growth Regul.	65(1)	1-10	2011	LSI1	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
44845	24055139	Sophie L?ran, Varala K., Jean-Christophe Boyer, Chiurazzi M., Crawford N., Fran?oise Daniel-Vedele, David L., Dickstein R., Fernandez E., Forde B., Gassmann W., Geiger D., Gojon A., Ji-Ming Gong, Barbara A Halkier, Jeanne M Harris, Hedrich R., Anis M Limami, Rentsch D., Seo M., Yi-Fang Tsay, Zhang M., Coruzzi G., Beno?t Lacombe	A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.	Trends Plant Sci.	19(1)	5-9	2014	PTR4,PTR6,NRT1,PTR1,PTR2,PTR7,PTR5,PTR8,SP1,PTR3,PTR9	OsPTR4, OsNPF7.1, NPF7.1 ,OsPTR6, OsNRT1;2, NRT1;2, OsNPF7.3, NPF7.3 ,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 ,OsPTR1, OsNPF8.2, NPF8.2 ,OsPTR2, OsNPF2.2, NPF2.2,OsPTR7, OsNPF8.1, NPF8.1 ,OsPTR5, OsNPF7.4, NPF7.4 ,OsPTR8, OsNPF8.5, NPF8.5 ,sp, SP, OsNPF4.1, NPF4.1,OsPTR3, OsNPF5.5, NPF5.5 ,OsPTR9 OsNPF8.20, NPF8.20  
44846	22046259	Aya K., Suzuki G., Suwabe K., Hobo T., Takahashi H., Shiono K., Yano K., Tsutsumi N., Nakazono M., Nagamura Y., Matsuoka M., Watanabe M.	Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays.	PLoS ONE	6(10)	e26162	2011	_	OsMS2, MS2, OsDPW, DPW, DPW1
44847	0	Ci-Feng Cai, Zhu J., Lou Y., Zong-Li Guo, Shuang-Xi Xiong, Wang K., Zhong-Nan Yang	The functional analysis of OsTDF1 reveals a conserved genetic pathway for tapetal development between rice and Arabidopsis	Science Bulletin	60(12)	1073-1082	2015	TDF1	OsTDF1, MYB35
44848	22843665	Amber L Hauvermale, Ariizumi T., Camille M Steber	Gibberellin signaling: a theme and variations on DELLA repression.	Plant Physiol.	160(1)	83-92	2012	GID1,SLR1,GID2	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e
44849	28974472	Zhang X., Yao C., Fu S., Xuan H., Wen S., Liu C., Li F., Liu A., Bi S., Zhang S., Li S.	Stress2TF: a manually curated database of TF regulation in plant response to stress.	Gene	638	36-40	2018		
44850	28939596	Zhang F., Tang D., Shen Y., Xue Z., Shi W., Ren L., Du G., Li Y., Cheng Z.	The F-box protein zygo1 Mediates Bouquet Formation to Promote Homologous Pairing, Synapsis, and Recombination in Rice Meiosis.	Plant Cell	29(10)	2597-2609	2017	PAIR3,_,_,ZEP1,ZYGO1,_,PAIR2,_	,OsSAD1, SAD1, OsSUN2, SUN2,OSK1, SKP1, OsSKP1,OsZEP1,Os_F0777,HEI10, HEI10A, HEI10B, OsHEI10,Pair2, OsPAIR2, OsASY1,OsZIP4, ZIP4, SPO22
44851	28947492	Schneider R., Tang L., Lampugnani E.R., Barkwill S., Lathe R., Zhang Y., McFarlane H.E., Pesquet E., Niittyla T., Mansfield S.D., Zhou Y., Persson S.	Two Complementary Mechanisms Underpin Cell Wall Patterning during Xylem Vessel Development.	Plant Cell	29(10)	2433-2449	2017	_,CESA7,_,BC7,_,BC6	CSIL3, OsCSIL3,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,CSIL1, OsCSIL1,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,CSIL2, OsCSIL2,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88
44852	28947303	Huang R., Zhao J., Liu J., Wang Y., Han S., Zhao H.	Genome-wide analysis and expression profiles of NTMC2 family genes in Oryza sativa.	Gene	637	130-137	2017	NTMC2T5,NTMC2T1.1,NTMC2T2.2,NTMC2T4.1,NTMC2T1.2,NTMC2T6.2,NTMC2T6.1,NTMC2T1.4,NTMC2T3,NTMC2T4.2,NTMC2T2.1,NTMC2T1.3,NTMC2T1.5	OsNTMC2T5,OsNTMC2T1.1,OsNTMC2T2.2,OsNTMC2T4.1,OsNTMC2T1.2,OsNTMC2T6.2,OsNTMC2T6.1,OsNTMC2T1.4,OsNTMC2T3,OsNTMC2T4.2,OsNTMC2T2.1,OsNTMC2T1.3,OsNTMC2T1.5
44853	29087306	Yu J., Han J., Kim Y.J., Song M., Yang Z., He Y., Fu R., Luo Z., Hu J., Liang W., Zhang D.	Two rice receptor-like kinases maintain male fertility under changing temperatures.	Proc. Natl. Acad. Sci. U.S.A.	114(46)	12327-12332	2017	_,TMS10	OsSERL8, OsBAK1-6, SERL8, BAK1-6, TMS10L,OsSERK4, OsSERL9, OsSERK2, OsBAK1-5, OsTMS10, SERK4, SERL9, SERK2, BAK1-5, OsBAK1, BAK1
44854	29042404	Brambilla V., Martignago D., Goretti D., Cerise M., Somssich M., de Rosa M., Galbiati F., Shrestha R., Lazzaro F., Simon R., Fornara F.	Antagonistic Transcription Factor Complexes Modulate the Floral Transition in Rice.	Plant Cell	29(11)	2801-2816	2017	BZIP42,RAP1B,BZIP77,BZIP24,HD3A,EF1,BZIP9,RAP1A,RFT1,BZIP62,GF14C	OsbZIP42, OsABF7, ABF7, HBF1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsbZIP77, OsFD1, FD1,OsbZIP24, OsFD3, FD3,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsbZIP09, OsbZIP9, OsABF6, ABF6, HBF2,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsbZIP62, OsABF8, OsEEL, EEL,GF14c, OsGF14c, 14-3-3c
44855	28987346	Jiang S., Jiang L., Yang J., Peng J., Lu Y., Zheng H., Lin L., Chen J., Yan F.	Over-expression of Oryza sativa Xrn4 confers plant resistance to virus infection.	Gene	639	44-51	2018	_,XRN4,XRN3	OsXrn4-L, Xrn4-L,OsXrn4, Xrn4,OsXrn3, Xrn3
44856	29358563	Giri M.K., Gautam J.K., Rajendra Prasad VB., Chattopadhyay S., Nandi A.K.	Rice MYC2 (OsMYC2) modulates light-dependent seedling phenotype, disease defence but not ABA signalling.	J. Biosci.	42(3)	501-508	2017	_	OsbHLH009, bHLH009, OsMYC2, MYC2
44857	28955349	Lu H., Dai Z., Li L., Wang J., Miao X., Shi Z.	OsRAMOSA2 Shapes Panicle Architecture through Regulating pedicel length.	Front Plant Sci	8	1538	2017	RCN2,RA2,LAX1	Rcn2, OsRCN2,ra2, Osra2, OsCrll4, CRL1L4, OsRA2,lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1
44858	28873038	Kurusu T., Koyano T., Kitahata N., Kojima M., Hanamata S., Sakakibara H., Kuchitsu K.	Autophagy-mediated regulation of phytohormone metabolism during rice anther development.	Plant Signal Behav	12(9)	e1365211	2017	ATG7	OsATG7, Atg7
44859	28979272	Zhu Q., Zhang X.L., Nadir S., DongChen WH., Guo X.Q., Zhang H.X., Li C.Y., Chen L.J., Lee D.S.	A LysM domain-containing gene OsEMSA1 Involved in Embryo sac Development in Rice (Oryza sativa L.).	Front Plant Sci	8	1596	2017	GA2OX8,HOX24,NAC5,_,EMSA1	OsGA2ox8,Oshox24, OsHox24, OsSLI1,OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009,,OsEMSA1 
44860	28904339	Liu Y.J., Liu X., Chen H., Zheng P., Wang W., Wang L., Zhang J., Tu J.	A Plastid-Localized Pentatricopeptide Repeat Protein is Required for Both pollen Development and Plant Growth in Rice.	Sci Rep	7(1)	11484	2017	_,_,_	OsPPR676, PPR676,Osj10gBTF3, 10gBTF3, BTF3a,atpB, AtpB, atpcf1, ATPbeta
44861	28894020	Tian X., Li X., Zhou W., Ren Y., Wang Z., Liu Z., Tang J., Tong H., Fang J., Bu Q.	Transcription Factor OsWRKY53 Positively Regulates Brassinosteroid Signaling and Plant Architecture.	Plant Physiol.	175(3)	1337-1349	2017	MAPK6,SMG1,WRKY53,D61	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsWRKY53, WRKY-53,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
44862	28906478	Wang J., Islam F., Li L., Long M., Yang C., Jin X., Ali B., Mao B., Zhou W.	Complementary RNA-Sequencing Based Transcriptomics and iTRAQ Proteomics Reveal the Mechanism of the Alleviation of Quinclorac Stress by Salicylic Acid in Oryza sativa ssp. japonica.	Int J Mol Sci	18(9)		2017	_,_,WRKY76,PHR3,PAL,_,_,PAL1,ALDH7,BGLU7,NAC95,_,WRKY45,PAL1,_,ALDH2A,ERF92,NAC122,_,EREBP1,DREB2A,4CL4	OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,,OsG6PDH5, G6PDH5,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6 ,Os3bglu7, Os3BGlu7, 3BGLU7, BGlu7, BGlu1, bglu1,ONAC095, ONAC95,,OsWRKY45,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPK1, PK1,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsERF#092, OsERF092, OsERF92, ERF922, OsERF922, AP2/EREBP#078, AP2/EREBP78,OsNAC10, NAC10, ONAC122, NAC122,OsGR3, GR3,OsEREBP1, OsERF#070, OsERF070, OsERF70, ERF70, AP2/EREBP#084, AP2/EREBP84,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,Os4CL4
44863	29021797	Zhang P., Zhang Y., Sun L., Sinumporn S., Yang Z., Sun B., Xuan D., Li Z., Yu P., Wu W., Wang K., Cao L., Cheng S.	The Rice AAA-ATPase OsFIGNL1 Is Essential for Male Meiosis.	Front Plant Sci	8	1639	2017	DMC1B,RAD51A2,_,DMC1A,RAD51A1	OsDMC1B, OsDmc1B, Dmc1B, RiLIM15B ,OsRad51A2, OsRAD51,OsFIGNL1, FIGNL1,OsDMC1A, OsDmc1A, Dmc1A, DMC1, OsDMC1, RiLIM15A, OsRad51,OsRAD51A1
44864	28943882	Zhang H., Liu X.L., Zhang R.X., Yuan H.Y., Wang M.M., Yang H.Y., Ma H.Y., Liu D., Jiang C.J., Liang Z.W.	Root Damage under Alkaline Stress Is Associated with Reactive Oxygen Species Accumulation in Rice (Oryza sativa L.).	Front Plant Sci	8	1580	2017	KOD1,_,NAC4,_,CP1	OsKOD1,Hsr203j, OsHsr203j,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsBI-1, OsBI1, BI1,OsCP1, Os CP1
44865	28936981	Li J., Liu Y.H., Zhang Y., Chen C., Yu X., Yu S.W.	Drought stress modulates diurnal oscillations of circadian clock and drought-responsive genes in Oryza sativa L.	Yi Chuan	39(9)	837-846	2017		
44866	28900229	Kuang J., Liu J., Mei J., Wang C., Hu H., Zhang Y., Sun M., Ning X., Xiao L., Yang L.	A Class II small heat shock protein OsHsp18.0 plays positive roles in both biotic and abiotic defense responses in rice.	Sci Rep	7(1)	11333	2017	PAL1,_,PR1A,NH1,PR1B,HSP18.0-CII	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,PAD4, OsPAD4,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsHSP18.0-CII, Oshsp18.0-CII, OsHSP18.0, OsHSP18.2
44867	28879616	Li J., Qin R., Xu R., Li H., Yang Y., Li L., Wei P., Yang J.	Isolation and identification of five cold-inducible promoters from Oryza sativa.	Planta	247(1)	99-111	2018	ERF104,CYP19-4,_,MDR7,ABA8OX1	DERF3, OsDERF3, OsERF#104, OsERF104, AP2/EREBP#152, AP2/EREBP152,OsCYP19-4, OsCYP-16, OsCYP19-3, OsCYP19-4.1, OsCYP19-4.2, OsCYP19-4.3, OsCYP19-4.4, OsCYP19-4.5, OsCYP19-4.6, OsCYP19-4.7, OsCYP19-4.8,LHY, LHY-like_chr.4, OsMYBR1, MYBR1, OsMYB1R35, MYB1R35,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1
44868	28869785	Li N., Wei S., Chen J., Yang F., Kong L., Chen C., Ding X., Chu Z.	OsASR2 regulates the expression of a defence-related gene, Os2H16, by targeting the GT-1 cis-element.	Plant Biotechnol. J.			2017	_,ASR5	Os2H16, 2H16,OsASR5, Asr5, Asr1, OsASR1, OsASR2, ASR2
44869	28955376	Zhou J., Deng K., Cheng Y., Zhong Z., Tian L., Tang X., Tang A., Zheng X., Zhang T., Qi Y., Zhang Y.	CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice.	Front Plant Sci	8	1598	2017	MIR815B,MIR820C,MIR815C,UCL23,UCL7,D3,MIR820B,_,MIR528,AAO2,MIR815A,MIR820A,MIR408	miR815b, osa-miR815b, osa-MIR815b, OsmiR815b,miR820c, osa-miR820c, osa-MIR820c, OsmiR820c,miR815c, osa-miR815c, osa-MIR815c, OsmiR815c,OsUCL23,OsUCL7,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,miR820b, osa-miR820b, osa-MIR820b, OsmiR820b,,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsAAO2, L-APX,miR815a, osa-miR815a, osa-MIR815a, OsmiR815a,miR820a, osa-miR820a, osa-MIR820a, OsmiR820a,miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 
44870	28979285	Choi N.Y., Lee E., Lee S.G., Choi C.H., Park S.R., Ahn I., Bae S.C., Hwang C.H., Hwang D.J.	Genome-Wide Expression Profiling of OsWRKY Superfamily Genes during Infection with Xanthomonas oryzae pv. oryzae Using Real-Time PCR.	Front Plant Sci	8	1628	2017	XA1,WRKY46,WRKY3,WRKY19,WRKY121,WRKY9,WRKY10,WRKY25,WRKY6,WRKY81,WRKY80,WRKY42,WRKY79,WRKY94,WRKY55,WRKY65,WRKY58,WRKY45,WRKY73,WRKY31,WRKY7,WRKY69,WRKY52,WRKY105,WRKY63,WRKY56,WRKY87,WRKY22,WRKY74,WRKY104,WRKY76,WRKY2,WRKY39,WRKY4,WRKY70,WRKY112,WRKY16,WRKY62,WRKY109,WRKY108,WRKY119,WRKY37,WRKY15,WRKY1,WRKY75,PR10A,WRKY48,WRKY51,WRKY12,WRKY28,WRKY95,WRKY115,WRKY41,WRKY107,WRKY21,WRKY117,WRKY66,WRKY118,WRKY84,WRKY67,WRKY114,WRKY27,WRKY78,WRKY29,WRKY13,WRKY96,WRKY82,WRKY60,WRKY23,WRKY17,WRKY40,WRKY11,WRKY34,WRKY113,WRKY90,WRKY30,WRKY54,WRKY123,WRKY68,WRKY20,WRKY106,WRKY50,WRKY36,WRKY26,WRKY32,WRKY83,WRKY18,WRKY88,WRKY64,WRKY86,WRKY102,WRKY8,WRKY5,WRKY43,WRKY49,WRKY71,WRKY47,WRKY14,WRKY77	Xa1(Xe), Xe, Xa1, Xa-1,OsWRKY46, WRKY91, OsWRKY91,OsWRKY3 ,OsWRKY19,OsWRKY121,OsWRKY9,OsWRKY10,OsWRKY25, OsWRKY44, WRKY44,OsWRKY6, WRKY-6,OsWRKY81, OsWRKY33,OsWRKY80,OsWRKY42, WRKY-42,OsWRKY79, WRKY-79,OsWRKY94,OsWRKY55,OsWRKY65,OsWRKY58,OsWRKY45,OsWRKY73,OsWRKY31,OsWRKY7,OsWRKY69,OsWRKY52,OsWRKY105,OsWRKY63,OsWRKY56,OsWRKY87, OsSUSIBA2-like,OsWRKY22,OsWRKY74,OsWRKY104,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3,OsWRKY2,OsWRKY39,OsWRKY4, WRKY122, OsWRKY122,OsWRKY70,OsWRKY112,OsWRKY16,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsWRKY109,OsWRKY108,OsWRKY119,OsWRKY37,OsWRKY15,OsWRKY1, OsWRKY1v2,OsWRKY75,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY48,OsWRKY51,OsWRKY12,OsWRKY28,OsWRKY95,OsWRKY115,OsWRKY41,OsWRKY107,OsWRKY21,OsWRKY117,OsWRKY66,OsWRKY118,OsWRKY84,OsWRKY67,OsWRKY114,OsWRKY27,OsWRKY78,OsWRKY29,OsWRKY13,OsWRKY96,OsWRKY82,OsWRKY60,OsWRKY23,OsWRKY17,OsWRKY40,OsWRKY11, Dlf1, OsWRKY11.1, OsWRKY11.2,OsWRKY34,OsWRKY113,OsWRKY90,OsWRKY30,OsWRKY54,OsWRKY123,OsWRKY68,OsWRKY20,OsWRKY106,OsWRKY50,OsWRKY36,OsWRKY26, OsWRKY59,OsWRKY32,OsWRKY83,OsWRKY18,OsWRKY88,OsWRKY64,OsWRKY86, OsaLeg5, Leg5,OsWRKY102,OsWRKY8,OsWRKY5 ,OsWRKY43,OsWRKY49,OsWRKY71, WRKY-71,OsWRKY47,OsWRKY14,OsWRKY77, WRKY-77
44871	28973723	Viana V.E., Marini N., Finatto T., Ezquer I., Busanello C., Dos Santos RS., Pegoraro C., Colombo L., Costa de Oliveira A.	Iron excess in rice: from phenotypic changes to functional genomics of WRKY transcription factors.	Genet. Mol. Res.	16(3)		2017	WRKY46,WRKY64,WRKY113,_	OsWRKY46, WRKY91, OsWRKY91,OsWRKY64,OsWRKY113,
44872	28950028	Basak P., Maitra-Majee S., Das J.K., Mukherjee A., Ghosh Dastidar S., Pal Choudhury P., Lahiri Majumder A.	An evolutionary analysis identifies a conserved pentapeptide stretch containing the two essential lysine residues for rice L-myo-inositol 1-phosphate synthase catalytic activity.	PLoS ONE	12(9)	e0185351	2017	INO1	OsINO1, MIPS, IPS, RINO1, OsINO1-1, OsRINO1, OsMIPS1, MIPS1
44873	28956163	Yashvardhini N., Bhattacharya S., Chaudhuri S., Sengupta D.N.	Molecular characterization of the 14-3-3 gene family in rice and its expression studies under abiotic stress.	Planta	247(1)	229-253	2018	GF14D,GF14A,GF14H,GID2,GF14F,GF14B,GF14C,GF14G	GF14d, OsGF14d, Os14-3-3, 14-3-3d,GF14a, OsGF14a, WIN2, 14-3-3a,GF14h, OsGF14h, 14-3-3h,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,GF14b, OsGF14b, 14-3-3b,GF14c, OsGF14c, 14-3-3c,GF14g, OsGF14g, 14-3-3g
44874	28922748	Rai H., Yokoyama S., Satoh-Nagasawa N., Furukawa J., Nomi T., Ito Y., Fujimura S., Takahashi H., Suzuki R., Yousra E., Goto A., Fuji S., Nakamura S.I., Shinano T., Nagasawa N., Wabiko H., Hattori H.	Cesium Uptake by Rice Roots Largely Depends Upon a Single Gene, HAK1, Which Encodes a Potassium Transporter.	Plant Cell Physiol.	58(9)	1486-1493	2017	LCS	OsHAK1, HAK1
44875	28871478	Senoura T., Sakashita E., Kobayashi T., Takahashi M., Aung M.S., Masuda H., Nakanishi H., Nishizawa N.K.	The iron-chelate transporter OsYSL9 plays a role in iron distribution in developing rice grains.	Plant Mol. Biol.	95(4-5)	375-387	2017	YSL15,YSL9	OsYSL15, OsYs7,OsYSL9, OsYs13 
44876	28904074	Zhang J.P., Yu Y., Feng Y.Z., Zhou Y.F., Zhang F., Yang Y.W., Lei M.Q., Zhang Y.C., Chen Y.Q.	miR408 Regulates grain yield and Photosynthesis via a Phytocyanin Protein.	Plant Physiol.	175(3)	1175-1185	2017	MIR408,UCL8,PC	miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsUCL8,OsPC
44877	28932262	Fan C., Feng S., Huang J., Wang Y., Wu L., Li X., Wang L., Tu Y., Xia T., Li J., Cai X., Peng L.	AtCesA8-driven OsSUS3 expression leads to largely enhanced biomass saccharification and lodging resistance by distinctively altering lignocellulose features in rice.	Biotechnol Biofuels	10	221	2017	CESA3,CESA7,_,_,CESA1,GH9B3,GH9B1,CESA8,GH9B16,BC6,RSUS3,BC7	OsCesA3, OsCESA3, OS_CESA03,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsIRX14, IRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,OsIRX9, IRX9, OsGT43C/OsIRX9, OsGT43C,OsCesA1, OsCesA-1, OsCESA1, OS_CESA01, CesA1,OsGH9B3,OsGH9B1,OsCesA8, OsCESA8, OS_CESA08, CesA8,OsGH9B16,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
44878	29051769	He Z., Zeng J., Ren Y., Chen D., Li W., Gao F., Cao Y., Luo T., Yuan G., Wu X., Liang Y., Deng Q., Wang S., Zheng A., Zhu J., Liu H., Wang L., Li P., Li S.	OsGIF1 Positively Regulates the Sizes of Stems, Leaves, and Grains in Rice.	Front Plant Sci	8	1730	2017	_	OsGIF3, GIF3, OsGIF1, GIF1, MKB3
44879	29106954	Huang L., Jia J., Zhao X., Zhang M., Huang X., E Ji, Ni L., Jiang M.	The ascorbate peroxidase APX1 is a direct target of a zinc finger transcription factor ZFP36 and a late embryogenesis abundant protein OsLEA5 interacts with ZFP36 to co-regulate OsAPX1 in seed germination in rice.	Biochem. Biophys. Res. Commun.	495(1)	339-345	2018	APX2,BSRD1,LEA8	OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, bsr-d1 ,OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5
44880	29052517	Wu Q., Liu X., Yin D., Yuan H., Xie Q., Zhao X., Li X., Zhu L., Li S., Li D.	Constitutive expression of OsDof4, encoding a C2-C2 zinc finger transcription factor, confesses its distinct flowering effects under long- and short-day photoperiods in rice (Oryza sativa L.).	BMC Plant Biol.	17(1)	166	2017	_,SE1,HD3A,EF1,RFT1	OsDof4, Dof4, OsDof-4, Dof-4,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
44881	29045801	Rekha K., Baskar B., Srinath S., Usha B.	Plant-growth-promoting rhizobacteria Bacillus subtilis RR4 isolated from rice rhizosphere induces malic acid biosynthesis in rice roots.	Can. J. Microbiol.	64(1)	20-27	2018		
44882	29158635	Rossatto T., do Amaral MN., Benitez L.C., Vighi I.L., Braga E.J.B., de Magalh?es J?nior AM., Maia M.A.C., da Silva Pinto L.	Gene expression and activity of antioxidant enzymes in rice plants, cv. BRS AG, under saline stress.	Physiol Mol Biol Plants	23(4)	865-875	2017	SOD2,FSD1.1 ,_,SOD4,CATB,SODCC2,SODCC1,_,APX1	OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX
44883	29114253	Ma Y., Zhao Y., Shangguan X., Shi S., Zeng Y., Wu Y., Chen R., You A., Zhu L., Du B., He G.	Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice.	Front Plant Sci	8	1783	2017	RLCK216	OsRLCK216, OsRRK1, RRK1
44884	29163588	Volante A., Desiderio F., Tondelli A., Perrini R., Orasen G., Biselli C., Riccardi P., Vattari A., Cavalluzzo D., Urso S., Ben Hassen M., Fricano A., Piffanelli P., Cozzi P., Biscarini F., Sacchi G.A., Cattivelli L., Val? G.	Genome-Wide Analysis of japonica Rice Performance under Limited Water and Permanent Flooding Conditions.	Front Plant Sci	8	1862	2017		
44885	29039754	El Mannai Y., Akabane K., Hiratsu K., Satoh-Nagasawa N., Wabiko H.	The NAC transcription factor gene OsY37 (ONAC011) Promotes leaf senescence and Accelerates Heading Time in Rice.	Int J Mol Sci	18(10)		2017	Y37	NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1
44886	29035318	Jehanzeb M., Zheng X., Miao Y.	The Role of the S40 Gene Family in leaf senescence.	Int J Mol Sci	18(10)		2017	S40-5,S40-13,S40-16,S40-7,S40-12,S40-9,S40-15,S40-11,_,S40-4,S40-6,S40-2,S40-10,S40-8,S40-3,S40-14	OsS40-5,OsS40-13,OsS40-16,OsS40-7,OsS40-12,OsS40-9,OsS40-15,OsS40-11,Dfu584, Duf584, OsS40-1, S40-1 ,OsS40-4,OsS40-6,OsS40-2,OsS40-10,OsS40-8,OsS40-3,OsS40-14
44887	29048565	Ma Y., Yang C., He Y., Tian Z., Li J.	Rice OVATE family protein 6 regulates plant development and confers resistance to drought and cold stresses.	J. Exp. Bot.	68(17)	4885-4898	2017	LRA1,ATP6,SODB,PIN1C,IAA1,_,_,SODCC2,PIN1B,_,PIN9,PIN10A,_	OsPIN2, PIN2, OsLRA1,atp6, OsPOX1, prx3, POX1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2,PIN1B, OsPIN1B, OsPIN1b, OsPIN1c,OsIAA1, OsIAA4,OsOFP4, OFP4, OsOFP06, OsOFP6, OFP6,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsTIR1, TIR1, OsFbox248, Os_F0717,OsPIN9,PIN3A, OsPIN3a, OsPIN3t, OsPIN10a, OsPIN3,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492
44888	28977024	Zheng L., Zhang C., Shi C., Yang Z., Wang Y., Zhou T., Sun F., Wang H., Zhao S., Qin Q., Qiao R., Ding Z., Wei C., Xie L., Wu J., Li Y.	Rice stripe virus NS3 protein regulates primary miRNA processing through association with the miRNA biogenesis factor OsDRB1 and facilitates virus infection in rice.	PLoS Pathog.	13(10)	e1006662	2017	_,MIR528,D3,DRB4,PT6,DRB3,DRB2,AGO1A,SODCC2,DRB1A,DRB1C,SULTR2;2	OsRBP, OsDRB1b, DRB1b,miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,OsDRB4,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsDRB3,OsDRB2,OsAGO1a, AGO1a, AGO10, AGO1-1 ,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,OsDRB1a, DRB1a,OsDRB1c, DRB1c,OsSultr2;2, OsSul2;2, OsaSULTR2;1, SULTR2;1, OsSULTR2;1
44889	29123535	Prasanth V.V., Babu M.S., Basava R.K., Tripura Venkata VGN., Mangrauthia S.K., Voleti S.R., Neelamraju S.	Trait and Marker Associations in Oryza nivara and O. rufipogon Derived Rice Lines under Two Different Heat Stress Conditions.	Front Plant Sci	8	1819	2017		
44890	29084903	Chou H.L., Tian L., Kumamaru T., Hamada S., Okita T.W.	Multifunctional RNA binding protein OsTudor-SN in Storage Protein mRNA Transport and Localization.	Plant Physiol.	175(4)	1608-1623	2017	_,EXPB3,_,_,_,GRP3,_,_,_,_,EIF3G,_,_,_	Rp120, OsTSN, TSN ,OsEXPB3, osaEXPb1.10, EXPb1.10,OsTFIIS-like gene, OsMed26_3, Med26_3,,RBP-61 ,OsGRP3, RTP, RBP-152 ,RBP-23,RBP-157,OsRH52B, RH52B, RBP-100 ,OSVDAC1, osvdac1, OsVDAC1, VDAC1,eIF-3g, OseIF3g, RBP-43 ,LTPL163,RBP-159 ,RBP-59 
44891	29158625	Wang X., Wang F., Chen H., Liang X., Huang Y., Yi J.	Comparative genomic hybridization and transcriptome sequencing reveal that two genes, OsI_14279 (LOC_Os03g62620) and OsI_10794 (LOC_Os03g14950) regulate the mutation in the gamma-rl rice mutant.	Physiol Mol Biol Plants	23(4)	745-754	2017	LEA7,_	OsLEA7, OsLEA7a, OsLEA7b, OsLEA7c,OspPLAIIIalpha, pPLAIIIalpha
44892	29100789	Almadanim M.C., Gon?alves NM., Rosa M.T.G., Alexandre B.M., Cordeiro A.M., Rodrigues M., Saibo N.J.M., Soares C.M., Rom?o CV., Oliveira M.M., Abreu I.A.	The rice cold-responsive calcium-dependent protein kinase OsCPK17 is regulated by alternative splicing and post-translational modifications.	Biochim. Biophys. Acta	1865(2)	231-246	2018	CDPK17	OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5
44893	29045007	Li C., Liu Y., Shen W.H., Yu Y., Dong A.	Chromatin-remodeling factor OsINO80 is involved in regulation of gibberellin biosynthesis and is crucial for rice plant growth and development.	J Integr Plant Biol			2017	D18,_,KAO,_,CPS1,_,_	d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsH2A.Z, H2A.Z,OsKAO, kao, CYP88A5, OSKAO, Os KAO, RPE1,HTA705,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsINO80, INO80,HTA713 
44894	28723420	Rosas-Santiago P., Lagunas-Gomez D., Y??ez-Dom?nguez C., Vera-Estrella R., Zimmermannov? O., Sychrov? H., Pantoja O.	Plant and yeast cornichon possess a conserved acidic motif required for correct targeting of plasma membrane cargos.	Biochim. Biophys. Acta	1864(10)	1809-1818	2017	HKT6,_	OsHKT6, OsHKT1;3, HKT1;3,OsCNIH1, CNIH1
44895	29090013	Tao J., Sun H., Gu P., Liang Z., Chen X., Lou J., Xu G., Zhang Y.	A sensitive synthetic reporter for visualizing cytokinin signaling output in rice.	Plant Methods	13	89	2017	RR4,RR13,RR6,RR8,RR9,RR12,RR11,RR5,RR10,RR3,RR7,RR2,_,RR1	rr4, OsRR4, Rra3, OsRRA3,OsRR13, Rra12, OsRR12, OsRRA12, RR12,OsRR6, rr6, Rra6, OsRRA6,rr8, OsRR8, Rra13, OsRR15, RR15, OsRRA13,OsRR9, Rra1, OsRRA1, OsRR10, RR10,OsRR12, Rra11, OsRR8, RR8, OsRRA11,OsRR11, Rra8, OsRRA8, RR8,rr5, OsRR5, Rra4, OsRRA4,OsRR10, Rra2, OsRRA2, RR2,OSRR3, OsRR3, rr3, Rra7, OsRRA7,rr7, OsRR7, Rra5, OsRRA5,rr2, Osrr2, OsRR2, Rra10, OsRRA10,OsRR41, RR41, Rra14, OsRR14, RR14, OsRRA14, OsEnS-54,rr1, OsRR1, Rra9, OsRRA9
44896	29163593	Wang F.Z., Chen M.X., Yu L.J., Xie L.J., Yuan L.B., Qi H., Xiao M., Guo W., Chen Z., Yi K., Zhang J., Qiu R., Shu W., Xiao S., Chen Q.F.	OsARM1, an R2R3 MYB transcription factor, Is Involved in Regulation of the Response to Arsenic Stress in Rice.	Front Plant Sci	8	1868	2017	LSI1,PDR2,LSI2,MRP9,LSI6,_,MDR7	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,ABCG41, OsABCG41, OsPDR2, OsABCG41_1, OsABCG41_2,Lsi2, SIET1, OsLsi2,OsABCC9, ABCC9, OsMRP9, OsABCC14, ABCC14 ,Lsi6, OsNIP2;2, NIP2-2, OsLsi6, OsNIP2.2/OsLsi6, OsNIP2.2, NIP2.2,OsMYB-1, MYB-1, MYB1, OsARM1, ARM1,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11
44897	28994391	Zhao S., Hong W., Wu J., Wang Y., Ji S., Zhu S., Wei C., Zhang J., Li Y.	A viral protein promotes host SAMS1 activity and ethylene production for the benefit of virus infection.	Elife	6		2017	_,EIN2	OsSAMS1, OS-SAMS1, OsSAMS, SAM, SAMS,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
44898	28988107	Chen Y., Zhou X., Chang S., Chu Z., Wang H., Han S., Wang Y.	Calcium-dependent protein kinase 21 phosphorylates 14-3-3 proteins in response to ABA signaling and salt stress in rice.	Biochem. Biophys. Res. Commun.	493(4)	1450-1456	2017	GID2,CDPK21,LEA3-1,BZIP23,_	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsCDPK21, OsCPK21,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,P5CS2, OsP5CS2, OsALDH18B2, ALDH18B2 
44899	29016913	Uraguchi S., Tanaka N., Hofmann C., Abiko K., Ohkama-Ohtsu N., Weber M., Kamiya T., Sone Y., Nakamura R., Takanezawa Y., Kiyono M., Fujiwara T., Clemens S.	Phytochelatin Synthase has Contrasting Effects on Cadmium and Arsenic Accumulation in Rice Grains.	Plant Cell Physiol.	58(10)	1730-1742	2017	_,PCS1	OsPCS, PCS, OsPCS2, PCS2, OsPCS2a, PCS2a, OsPCS2b, PCS2b, OsPCS1, PCS1, OsPCS1a, OsPCS1b, OsPCS1c, OsPCS1full,OsPCS1, OsPCS2, PCS2 
44900	29047257	Piao W., Han S.H., Sakuraba Y., Paek N.C.	Rice 7-Hydroxymethyl Chlorophyll a Reductase Is Involved in the Promotion of Chlorophyll Degradation and Modulates Cell Death Signaling.	Mol. Cells	40(10)	773-786	2017	NYC3,HCAR,_,NOL,RCCR1,SGR,NYC1	nyc3, OsNYC3, PPH,OsHCAR,OsPAO, PAO,nol, NOL1, OsNOL, OsNOL1,OsRCCR1, OsRCCR, RCCR,sgr(t), sgr, OsSGR, OsSgr,nyc1, OsNYC1
44901	29082724	Ren B., Yan F., Kuang Y., Li N., Zhang D., Lin H., Zhou H.	[Specificity and inheritance of rBE3 and rBE4 endonuclease-induced gene modifications in rice].	Sheng Wu Gong Cheng Xue Bao	33(10)	1776-1785	2017		
44902	28931938	Feng F., Mei H., Fan P., Li Y., Xu X., Wei H., Yan M., Luo L.	Dynamic transcriptome and phytohormone profiling along the time of light exposure in the mesocotyl of rice seedling.	Sci Rep	7(1)	11961	2017		
44903	28878216	Batista R., Fonseca C., Planchon S., Negr?o S., Renaut J., Oliveira M.M.	Environmental stress is the major cause of transcriptomic and proteomic changes in GM and non-GM plants.	Sci Rep	7(1)	10624	2017		
44904	28980929	Kariminik A., Saeidi M., Parsia P.	Cloning and expression of rice glutamate decarboxylase (GAD) in Escherichia coli.	Cell. Mol. Biol. (Noisy-le-grand)	63(9)	106-108	2017		
44905	28889752	Le T.B., Han C.S., Cho K., Han O.	Covalent immobilization of oxylipin biosynthetic enzymes on nanoporous rice husk silica for production of cis(+)-12-oxophytodienoic acid.	Artif Cells Nanomed Biotechnol		1-7	2017		
44906	28947705	Bizimana J.B., Luzi-Kihupi A., W Murori R., Singh R.K.	Identification of quantitative trait loci for salinity tolerance in rice (Oryza sativa L.) using IR29/Hasawi mapping population.	J. Genet.	96(4)	571-582	2017		
44907	28947315	Hao Y., Ma C., Zhang Z., Song Y., Cao W., Guo J., Zhou G., Rui Y., Liu L., Xing B.	Carbon nanomaterials alter plant physiology and soil bacterial community composition in a rice-soil-bacterial ecosystem.	Environ. Pollut.	232	123-136	2018		
44908	28947784	Pei W., Jain A., Sun Y., Zhang Z., Ai H., Liu X., Wang H., Feng B., Sun R., Zhou H., Xu G., Sun S.	OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice.	Sci Rep	7(1)	12280	2017		
44909	28922368	Jayaswal P.K., Dogra V., Shanker A., Sharma T.R., Singh N.K.	A tree of life based on ninety-eight expressed genes conserved across diverse eukaryotic species.	PLoS ONE	12(9)	e0184276	2017		
44910	28887709	Chang T.S., Liu C.W., Lin Y.L., Li C.Y., Wang A.Z., Chien M.W., Wang C.S., Lai C.C.	Mapping and comparative proteomic analysis of the starch biosynthetic pathway in rice by 2D PAGE/MS.	Plant Mol. Biol.	95(4-5)	333-343	2017		
44911	28952045	Zhang S., He X., Zhao J., Cheng Y., Xie Z., Chen Y., Yang T., Dong J., Wang X., Liu Q., Liu W., Mao X., Fu H., Chen Z., Liao Y., Liu B.	Identification and validation of a novel major QTL for harvest index in rice (Oryza sativa L.).	Rice (N Y)	10(1)	44	2017		
44912	28965833	Sun W., Gao D., Xiong Y., Tang X., Xiao X., Wang C., Yu S.	Hairy Leaf 6, an AP2/ERF Transcription Factor, Interacts with OsWOX3B and Regulates Trichome Formation in Rice.	Mol Plant	10(11)	1417-1433	2017	PIN1A,YUCCA5,ARF7,ARF2,GL1,PLT2	PIN1C, OsPIN1C, OsPIN1c, OsPIN1a,OsYUCCA5, OsYUC5, YUC5,OsARF7,OsARF2, OsARF4, ARF4,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,OsPLT2, AP2/EREBP#060, AP2/EREBP60, HL6, OsHL6
44913	29085243	Wang S.S., Chen R.K., Chen K.Y., Liu C.Y., Kao S.M., Chung C.L.	Genetic mapping of the qSBN7 locus, a QTL controlling secondary branch number per panicle in rice.	Breed. Sci.	67(4)	340-347	2017		
44914	28979283	Yuan J., Meng J., Liang X., E Y., Yang X., Chen W.	Organic Molecules from Biochar Leacheates Have a Positive Effect on Rice Seedling cold tolerance.	Front Plant Sci	8	1624	2017	SAP8,NCA1A,DREB1B,_,DREB1A,WRKY76	Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsCOIN, COIN, OsNCA1a, NCA1a,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsMYB2, MYB2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsWRKY76, OsWRKY76.1, OsWRKY76.2, OsWRKY76.3
44915	28900732	Arya P., Acharya V.	Plant STAND P-loop NTPases: a current perspective of genome distribution, evolution, and function : Plant STAND P-loop NTPases: genomic organization, evolution, and molecular mechanism models contribute broadly to plant pathogen defense.	Mol. Genet. Genomics	293(1)	17-31	2018		
44916	28910327	Kaur A., Pati P.K., Pati A.M., Nagpal A.K.	In-silico analysis of cis-acting regulatory elements of pathogenesis-related proteins of Arabidopsis thaliana and Oryza sativa.	PLoS ONE	12(9)	e0184523	2017	PR1A,POX22.3,_,CAL1,_,_	OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPR5, PR5,OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1,OsPR2, PR2, Gns4, OsGLN2,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10
44917	28969805	Nakamura Y., Ono M., Sawada T., Crofts N., Fujita N., Steup M.	Characterization of the functional interactions of plastidial starch phosphorylase and starch branching enzymes from rice endosperm during reserve starch biosynthesis.	Plant Sci.	264	83-95	2017		
44918	28932234	Jiang C.J., Liu X.L., Liu X.Q., Zhang H., Yu Y.J., Liang Z.W.	Stunted Growth Caused by blast disease in Rice Seedlings Is Associated with Changes in Phytohormone Signaling Pathways.	Front Plant Sci	8	1558	2017		
44919	28887658	Okada S., Suehiro M., Ebana K., Hori K., Onogi A., Iwata H., Yamasaki M.	Genetic dissection of grain traits in Yamadanishiki, an excellent sake-brewing rice cultivar.	Theor. Appl. Genet.	130(12)	2567-2585	2017		
44920	28922746	Cheng M.L., Lo S.F., Hsiao A.S., Hong Y.F., Yu S.M., Ho T.D.	Ectopic Expression of WINDING 1 Leads to Asymmetrical Distribution of Auxin and a Spiral Phenotype in Rice.	Plant Cell Physiol.	58(9)	1494-1506	2017	WIN1	BTBN6
44921	28821187	Puram V.R.R., Ontoy J., Linscombe S., Subudhi P.K.	Genetic Dissection of Seedling Stage Salinity Tolerance in Rice Using Introgression Lines of a Salt Tolerant Landrace Nona Bokra.	J. Hered.	108(6)	658-670	2017		
44922	29033966	Wang Z., Hong X., Hu K., Wang Y., Wang X., Du S., Li Y., Hu D., Cheng K., An B., Li Y.	Impaired Magnesium protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice.	Front Plant Sci	8	1694	2017	YGL18 	ChlM, CHLM, MgMT
44923	28950768	Yaguchi T., Kinami T., Ishida T., Yasuhara T., Takahashi K., Matsuura H.	Induction of plant disease resistance upon treatment with yeast cell wall extract.	Biosci. Biotechnol. Biochem.	81(11)	2071-2078	2017		
44924	28895580	Ordonio R.L., Matsuoka M.	New path towards a better rice architecture.	Cell Res.	27(10)	1189-1190	2017		
44925	29031162	Wang Y., Lin H., Tong X., Hou Y., Chang Y., Zhang J.	DNA demethylation activates genes in seed maternal integument development in rice (Oryza sativa L.).	Plant Physiol. Biochem.	120	169-178	2017		
44926	28951488	Liu H., Ravichandran S., Teh O.K., McVey S., Lilley C., Teresinski H.J., Gonzalez-Ferrer C., Mullen R.T., Hofius D., Prithiviraj B., Stone S.L.	The RING-Type E3 Ligase XBAT35.2 Is Involved in Cell Death Induction and Pathogen Response.	Plant Physiol.	175(3)	1469-1483	2017		
44927	28963534	Misra G., Badoni S., Anacleto R., Graner A., Alexandrov N., Sreenivasulu N.	Whole genome sequencing-based association study to unravel genetic architecture of cooked grain width and length traits in rice.	Sci Rep	7(1)	12478	2017	_,_,_,_,NAC10,_,_,_,_,_,_	,,OsMed34_2, Med34_2,,ONAC010, ONAC10, OsSTA199,,OsFbox557, Fbox557, Os_F0256,,,,
44928	28951734	Zheng Z., Yang X., Fu Y., Zhu L., Wei H., Lin X.	Overexpression of PvPin1, a Bamboo Homolog of Pin1-Type Parvulin 1, Delays flowering time in Transgenic Arabidopsis and Rice.	Front Plant Sci	8	1526	2017		
44929	28979287	Moyle R.L., Carvalhais L.C., Pretorius L.S., Nowak E., Subramaniam G., Dalton-Morgan J., Schenk P.M.	An Optimized Transient Dual Luciferase Assay for Quantifying MicroRNA Directed Repression of Targeted Sequences.	Front Plant Sci	8	1631	2017		
44930	28878591	Braumann I., Dockter C., Beier S., Himmelbach A., Lok F., Lundqvist U., Skadhauge B., Stein N., Zakhrabekova S., Zhou R., Hansson M.	Mutations in the gene of the Galpha subunit of the heterotrimeric G protein are the cause for the brachytic1 semi-dwarf phenotype in barley and applicable for practical breeding.	Hereditas	155	10	2018		
44931	29018471	Yin C.C., Zhao H., Ma B., Chen S.Y., Zhang J.S.	Diverse Roles of Ethylene in Regulating Agronomic Traits in Rice.	Front Plant Sci	8	1676	2017		
44932	28966624	Saha A., Das S., Moin M., Dutta M., Bakshi A., Madhav M.S., Kirti P.B.	Genome-Wide Identification and Comprehensive Expression Profiling of Ribosomal Protein Small Subunit (RPS) Genes and their Comparative Analysis with the Large Subunit (RPL) Genes in Rice.	Front Plant Sci	8	1553	2017	_,RPS25,RPS24,_,RPS18B,_,_,RPS7A,_,RPS18A,_,RPS26,RPS27,RPS30,_,_,_,_,RPS5,RPS15A,RPS9-2,RPS23A,_,RPS28 ,_,RPS4,UBQ5,_,_,_,RPS17,RPS29,RPS10A,_	RPS13, RPS13a, OsRPS13, OsRPS13a,RPS25, RPS25a, OsRPS25, OsRPS25a ,OsRPS24,RPS6, RPS6a, RPS6A, OsRPS6, OsRPS6a,RPS18b,RPS6, OsRPS6,RPS7, OsRPS7,RPS7a, OsRPS7a,RPS4, RPS19, OsRPS4, OsRPS19 ,RPS18a, OsRPS18a,RPS13, OsRPS13,OsRPS26,OsRPS27,OsRPS30,RPS5,RPS18, OsRPS18,rig, RPS15, OsRPS15,RPS3a,RPS5A,RPS15a, OsRPS15a   ,OsRPS9-2,RPS23a, OsRPS23a,RPS4,OsRPS28,RPS9, OsRPS9,rps4, RPS4a ,RPS27a, OsUBQ5, OsRPS27a,RPS21, OsRPS21,RPS10, OsRPS10,RPS25, OsRPS25,OsRPS17,OsRPS29,RPS10a, OsRPS10a,RPS23, OsRPS23
44933	28903074	Datta M., Kaushik S., Jyoti A., Mathur N., Kothari S.L., Jain A.	SIZ1-mediated SUMOylation during phosphate homeostasis in plants: Looking beyond the tip of the iceberg.	Semin. Cell Dev. Biol.			2017		
44934	28874677	Islam F., Farooq M.A., Gill R.A., Wang J., Yang C., Ali B., Wang G.X., Zhou W.	2,4-D attenuates salinity-induced toxicity by mediating anatomical changes, antioxidant capacity and cation transporters in the roots of rice cultivars.	Sci Rep	7(1)	10443	2017		
44935	28921169	Yeo B.P.H., Bhave M., Hwang S.S.	Effects of acute salt stress on modulation of gene expression in a Malaysian salt-tolerant indigenous rice variety, Bajong.	J. Plant Res.	131(1)	191-202	2018		
44936	29021808	Xiao Y., Liu D., Zhang G., Tong H., Chu C.	Brassinosteroids Regulate OFP1, a DLT interacting protein, to Modulate Plant Architecture and Grain Morphology in Rice.	Front Plant Sci	8	1698	2017	_,_,DLT,BZR1,D11,GA2OX3,D2,SD1,BRD1,D18	OsOFP1, OsOFP01, OFP1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsBZR1, Os BZR1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsGA2ox3, ga2ox 3, OsGA2ox-3, GA2ox3, GA2ox-3, GA2ox4,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1
44937	28983307	Yang X., Xia X., Zhang Z., Nong B., Zeng Y., Xiong F., Wu Y., Gao J., Deng G., Li D.	QTL Mapping by Whole Genome Re-sequencing and Analysis of Candidate Genes for Nitrogen Use Efficiency in Rice.	Front Plant Sci	8	1634	2017		
44938	29085249	Segami S., Takehara K., Yamamoto T., Kido S., Kondo S., Iwasaki Y., Miura K.	Overexpression of SRS5 improves grain size of brassinosteroid-related dwarf mutants in rice (Oryza sativa L.).	Breed. Sci.	67(4)	393-397	2017	TID1,D2,D61	OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, ,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1
44939	28905253	Kumari M., Rai A.K., Devanna B.N., Singh P.K., Kapoor R., Rajashekara H., Prakash G., Sharma V., Sharma T.R.	Co-transformation mediated stacking of blast resistance genes Pi54 and Pi54rh in rice provides broad spectrum resistance against Magnaporthe oryzae.	Plant Cell Rep.	36(11)	1747-1755	2017		
44940	29163568	Liu X., Zhang K., Zhang Z., Cao Q., Lv Z., Yuan Z., Tian Y., Cao W., Zhu Y.	Canopy Chlorophyll Density Based Index for Estimating Nitrogen Status and Predicting grain yield in Rice.	Front Plant Sci	8	1829	2017		
44941	29045473	Cheah B.H., Jadhao S., Vasudevan M., Wickneswari R., Nadarajah K.	Identification of functionally important microRNAs from rice inflorescence at heading stage of a qDTY4.1-QTL bearing Near Isogenic Line under drought conditions.	PLoS ONE	12(10)	e0186382	2017		
44942	29081784	Kuroha T., Nagai K., Kurokawa Y., Nagamura Y., Kusano M., Yasui H., Ashikari M., Fukushima A.	eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater Rice.	Front Plant Sci	8	1753	2017		
44943	29057928	Peng P., Liu L., Fang J., Zhao J., Yuan S., Li X.	The rice TRIANGULAR HULL1 protein acts as a transcriptional repressor in regulating lateral development of spikelet.	Sci Rep	7(1)	13712	2017	BLS1	OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1
44944	29030489	Mitchell D., Ritchey L.E., Park H., Babitzke P., Assmann S.M., Bevilacqua P.C.	Glyoxals as in vivo RNA structural probes of guanine base-pairing.	RNA	24(1)	114-124	2018		
44945	29020034	Guan Q., Liao X., He M., Li X., Wang Z., Ma H., Yu S., Liu S.	Tolerance analysis of chloroplast OsCu/Zn-SOD overexpressing rice under NaCl and NaHCO3 stress.	PLoS ONE	12(10)	e0186052	2017		
44946	28985711	Oono Y., Yazawa T., Kanamori H., Sasaki H., Mori S., Matsumoto T.	Genome-wide analysis of rice cis-natural antisense transcription under cadmium exposure using strand-specific RNA-Seq.	BMC Genomics	18(1)	761	2017		
44947	29090429	Rao G.S., Deveshwar P., Sharma M., Kapoor S., Rao K.V.	Evolvement of transgenic male-sterility and fertility-restoration system in rice for production of hybrid varieties.	Plant Mol. Biol.	96(1-2)	35-51	2018		
44948	28971382	Bettembourg M., Dardou A., Audebert A., Thomas E., Frouin J., Guiderdoni E., Ahmadi N., Perin C., Dievart A., Courtois B.	Genome-wide association mapping for root cone angle in rice.	Rice (N Y)	10(1)	45	2017		
44949	28993622	Hilbert L., Neves E.G., Pugliese F., Whitney B.S., Shock M., Veasey E., Zimpel C.A., Iriarte J.	Evidence for mid-Holocene rice domestication in the Americas.	Nat Ecol Evol	1(11)	1693-1698	2017		
44950	29081789	Wang Q., Zhao H., Jiang J., Xu J., Xie W., Fu X., Liu C., He Y., Wang G.	Genetic Architecture of Natural Variation in Rice Nonphotochemical Quenching Capacity Revealed by Genome-Wide Association Study.	Front Plant Sci	8	1773	2017		
44951	29074943	Lu J., Miao Y., Shi W., Li J., Yuan F.	Evaluating different approaches to non-destructive nitrogen status diagnosis of rice using portable RapidSCAN active canopy sensor.	Sci Rep	7(1)	14073	2017		
44952	29035627	Yamauchi T., Fukazawa A., Nakazono M.	METALLOTHIONEIN genes encoding ROS scavenging enzymes are down-regulated in the root cortex during inducible aerenchyma formation in rice.	Plant Signal Behav	12(11)	e1388976	2017	MTI1B,MT1F,MTI4A,MT2A,MT2B,MTI2B,MT1G,_,MTII1A,MTI1A,MTI3B,MTI3A,MTI4C,MTI4B	OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1,OsMT1f, OsMT1c, MT1f, MT1c, MT1Lb, OsMT1Lb ,OsMT1a, OsMT1a1, OsMT1a2, OsMT-I-4a, OsIDS1, OsMT1b, MT1b,OsMT2a, MT2a, met6, Osmet6, OsMT-2, MT-2, rgMT-2, OsMT-I-2a, OsMT2-1, MT-I-2a, MT2-1,OsMT2b, MT2b, OsMT-I-2c, MT-I-2c, MT2C, MT2BL, OsMT2C, OsMT2BL, MTE, OsMT2b1, OsMT2b2, MT2b1, MT2b2, MTb, met1, OsMTe, OsMT-I-2c, OsB22EL8, MTe, MT-I-2c, B22EL8,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT1g, MT1g, MT1Le, OsMT1Le ,MT1Ld, OsMT1Ld,OsMT4, OsMT-II-1a, MT4, MT-II-1a,MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1,MTd, OsMT-I-3b, OsMT3b, MT-I-3b, MT3b,OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,MT-1-4b, OsMT1d, MT1d, OsMT-I-4c, MT1c, OsMT1c,OsMT1c, MT1c, OsMT-I-4b, MT-I-4b, OsMT1f, MT1f, MT1Lc, OsMT1Lc 
44953	29132026	Moon S., Chandran A.K.N., Gho Y.S., Park S.A., Kim S.R., Yoo Y.H., Jung K.H.	Integrated omics analysis of root-preferred genes across diverse rice varieties including Japonica and indica cultivars.	J. Plant Physiol.	220	11-23	2018		
44954	29059222	Dey A., Samanta M.K., Gayen S., Sen S.K., Maiti M.K.	Correction: Enhanced Gene Expression Rather than Natural Polymorphism in Coding Sequence of the OsbZIP23 Determines Drought Tolerance and Yield Improvement in Rice Genotypes.	PLoS ONE	12(10)	e0187172	2017		
44955	28979832	Biswas P.S., Khatun H., Das N., Sarker M.M., Anisuzzaman M.	Mapping and validation of QTLs for cold tolerance at seedling stage in rice from an indica cultivar Habiganj Boro VI (Hbj.BVI).	3 Biotech	7(6)	359	2017		
44956	29017401	Miyazaki S., Jiang K., Kobayashi M., Asami T., Nakajima M.	Helminthosporic acid functions as an agonist for gibberellin receptor.	Biosci. Biotechnol. Biochem.	81(11)	2152-2159	2017		
44957	29030650	He R., Yu G., Han X., Han J., Li W., Wang B., Huang S., Cheng X.	ThPP1 gene, encodes an inorganic pyrophosphatase in Thellungiella halophila, enhanced the tolerance of the transgenic rice to alkali stress.	Plant Cell Rep.	36(12)	1929-1942	2017		
44958	28938141	Ye X., Li H., Zhang L., Chai R., Tu R., Gao H.	Amendment damages the function of continuous flooding in decreasing Cd and Pb uptake by rice in acid paddy soil.	Ecotoxicol. Environ. Saf.	147	708-714	2018		
44959	29118779	Song Y., Chen Y., Lv J., Xu J., Zhu S., Li M., Chen N.	Development of Chloroplast Genomic Resources for Oryza Species Discrimination.	Front Plant Sci	8	1854	2017		
44960	29158637	Kumar A., Bhowmick P.K., Singh V.J., Malik M., Gupta A.K., Seth R., Nagarajan M., Krishnan S.G., Singh A.K.	Marker-assisted identification of restorer gene(s) in iso-cytoplasmic restorer lines of WA cytoplasm in rice and assessment of their fertility restoration potential across environments.	Physiol Mol Biol Plants	23(4)	891-909	2017		
44961	29075848	Takaiwa F., Yang L., Wakasa Y., Ozawa K.	Compensatory rebalancing of rice prolamins by production of recombinant prolamin/bioactive peptide fusion proteins within ER-derived protein bodies.	Plant Cell Rep.	37(2)	209-223	2018		
44962	29096082	Blasi ?AR., Buffon G., Rativa A.G.S., Lopes M.C.B., Berger M., Santi L., Lavall?e-Adam M., Yates J.R., Schwambach J., Beys-da-Silva WO., Sperotto R.A.	High infestation levels of Schizotetranychus oryzae severely affects rice metabolism.	J. Plant Physiol.	219	100-111	2017		
44963	29118774	Mishra B.S., Jamsheer K M., Singh D., Sharma M., Laxmi A.	Genome-Wide Identification and Expression, Protein-Protein Interaction and Evolutionary Analysis of the Seed Plant-Specific BIG GRAIN and BIG GRAIN LIKE Gene Family.	Front Plant Sci	8	1812	2017	BG2,_,BG1,BG3,BG4	OsaBG2, OsBG2,OsaBGL1, OsBGL1, BGL1,OsaBG1, OsBG1,OsaBG3, OsBG3,OsaBG4, OsBG4
44964	29114258	Chen H., Zhang Q., Cai H., Xu F.	Ethylene Mediates Alkaline-Induced Rice Growth Inhibition by Negatively Regulating Plasma Membrane H+-ATPase Activity in Roots.	Front Plant Sci	8	1839	2017	_,ACO3,ACO5,EIN2,ACS5,ACO4,AHA8,ACS1,ACS2,SSG6	OsETOL1, OsSTA97, ETOL1, STA97,OsACO3,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsACS5, OS-ACS5, OsBphi008a,OsACO4,OSA8, OsA8, A8, osAHA8, AHA8, Os-HA1, OsHA1,ACC1*, OsACS1, Os-ACS1, ACC1,OsACS2, Os-ACS2,OsACS6, ACS6
44965	29058311	Shu K., Zhou W., Yang W.	APETALA 2-domain-containing transcription factors: focusing on abscisic acid and gibberellins antagonism.	New Phytol.	217(3)	977-983	2018		
44966	28974021	Zhang H., Lv S., Xu H., Hou D., Li Y., Wang F.	H?O? Is Involved in the Metallothionein-Mediated Rice Tolerance to Copper and Cadmium Toxicity.	Int J Mol Sci	18(10)		2017		
44967	29031161	Sihi S., Maiti S., Bakshi S., Nayak A., Chaudhuri S., Sengupta D.N.	Understanding the role of DNA polymerase lambda gene in different growth and developmental stages of Oryza sativa L. indica rice cultivars.	Plant Physiol. Biochem.	120	156-168	2017		
44968	29123537	Meng L., Wang B., Zhao X., Ponce K., Qian Q., Ye G.	Association Mapping of Ferrous, Zinc, and Aluminum Tolerance at the Seedling Stage in Indica Rice using MAGIC Populations.	Front Plant Sci	8	1822	2017		
44969	28983868	Zhang Y., Zhu Q., Yao Y., Zhao Z., Correll J.C., Wang L., Pan Q.	The Race Structure of the Rice Blast Pathogen Across Southern and Northeastern China.	Rice (N Y)	10(1)	46	2017		
44970	29089949	Dong Y., Fang X., Yang Y., Xue G.P., Chen X., Zhang W., Wang X., Yu C., Zhou J., Mei Q., Fang W., Yan C., Chen J.	Comparative Proteomic Analysis of Susceptible and Resistant Rice Plants during Early Infestation by Small Brown Planthopper.	Front Plant Sci	8	1744	2017		
44971	29085070	Bai X., Huang Y., Hu Y., Liu H., Zhang B., Smaczniak C., Hu G., Han Z., Xing Y.	Duplication of an upstream silencer of FZP increases grain yield in rice.	Nat Plants	3(11)	885-893	2017		
44972	29064391	Xiang J., Wu H., Zhang Y., Zhang Y., Wang Y., Li Z., Lin H., Chen H., Zhang J., Zhu D.	Transcriptomic Analysis of Gibberellin- and Paclobutrazol-Treated Rice Seedlings under Submergence.	Int J Mol Sci	18(10)		2017		
44973	29051768	Zhang Q., Li C.	Comparisons of Copy Number, Genomic Structure, and Conserved Motifs for alpha-amylase Genes from Barley, Rice, and Wheat.	Front Plant Sci	8	1727	2017		
44974	29077040	Fan Y., Wang T., Qiu Z., Peng J., Zhang C., He Y.	Fast Detection of Striped Stem-Borer (Chilo suppressalis Walker) Infested Rice Seedling Based on Visible/Near-Infrared Hyperspectral Imaging System.	Sensors (Basel)	17(11)		2017		
44975	29037166	Sajjad M., Ma X., Habibullah Khan S., Shoaib M., Song Y., Yang W., Zhang A., Liu D.	TaFlo2-A1, an ortholog of rice FLO2, is associated with thousand grain weight in bread wheat (Triticum aestivum L.).	BMC Plant Biol.	17(1)	164	2017		
44976	29123541	Miro B., Longkumer T., Entila F.D., Kohli A., Ismail A.M.	Rice Seed Germination Underwater: Morpho-Physiological Responses and the Bases of Differential Expression of Alcoholic Fermentation Enzymes.	Front Plant Sci	8	1857	2017		
44977	29065548	Lee H.Y., Back K.	Cadmium Disrupts Subcellular Organelles, Including Chloroplasts, Resulting in Melatonin Induction in Plants.	Molecules	22(10)		2017		
44978	29085383	Catolos M., Sandhu N., Dixit S., Shamsudin N.A.A., Naredo M.E.B., McNally K.L., Henry A., Diaz M.G., Kumar A.	Genetic Loci Governing grain yield and Root Development under Variable Rice Cultivation Conditions.	Front Plant Sci	8	1763	2017		
44979	29024026	Satish M., Nivya M.A., Abhishek S., Nakarakanti N.K., Shivani D., Vani M.V., Rajakumara E.	Computational characterization of substrate and product specificities, and functionality of S-adenosylmethionine binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize.	Proteins	86(1)	21-34	2018		
44980	29114257	Zhang C., Li H., Wang J., Zhang B., Wang W., Lin H., Luan S., Gao J., Lan W.	The Rice High-Affinity K+ Transporter OsHKT2;4 Mediates Mg2+ Homeostasis under High-Mg2+ Conditions in Transgenic Arabidopsis.	Front Plant Sci	8	1823	2017		
44981	29052022	Honta H., Inamura T., Konishi T., Satoh S., Iwai H.	UDP-arabinopyranose mutase gene expressions are required for the biosynthesis of the arabinose side chain of both pectin and arabinoxyloglucan, and normal leaf expansion in Nicotiana tabacum.	J. Plant Res.			2017		
44982	29078746	Zhang J., Chen K., Pang Y., Naveed S.A., Zhao X., Wang X., Wang Y., Dingkuhn M., Pasuquin J., Li Z., Xu J.	QTL mapping and candidate gene analysis of ferrous iron and zinc toxicity tolerance at seedling stage in rice by genome-wide association study.	BMC Genomics	18(1)	828	2017		
44983	29158633	Basu S., Giri R.K., Benazir I., Kumar S., Rajwanshi R., Dwivedi S.K., Kumar G.	Comprehensive physiological analyses and reactive oxygen species profiling in drought tolerant rice genotypes under salinity stress.	Physiol Mol Biol Plants	23(4)	837-850	2017		
44984	28990717	Khanam S., Bauters L., Singh R.R., Verbeek R., Haeck A., Sultan S.M.D., Demeestere K., Kyndt T., Gheysen G.	Mechanisms of resistance in the rice cultivar Manikpukha to the rice stem nematode Ditylenchus angustus.	Mol. Plant Pathol.			2017		
44985	28910580	Gupta P., De B.	Differential responses of cell wall bound phenolic compounds in sensitive and tolerant varieties of rice in response to salinity.	Plant Signal Behav	12(10)	e1379643	2017		
44986	29040362	Ma S., Song Q., Tao H., Harrison A., Wang S., Liu W., Lin S., Zhang Z., Ai Y., He H.	Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.).	Brief. Bioinformatics			2017		
44987	29032400	Li J., Pan Y., Guo H., Zhou L., Yang S., Zhang Z., Yang J., Zhang H., Li J., Zeng Y., Li Z.	Fine mapping of QTL qCTB10-2 that confers cold tolerance at the booting stage in rice.	Theor. Appl. Genet.	131(1)	157-166	2018		
44988	28982185	Cui H., Wang C., Qin T., Xu F., Tang Y., Gao Y., Zhao K.	Promoter variants of Xa23 alleles affect bacterial blight resistance and evolutionary pattern.	PLoS ONE	12(10)	e0185925	2017		
44989	29163589	Feng F., Li Y., Qin X., Liao Y., Siddique K.H.M.	Changes in Rice Grain Quality of Indica and Japonica Type Varieties Released in China from 2000 to 2014.	Front Plant Sci	8	1863	2017		
44990	29066364	Li Y., Li H., Li Y.F., Zhao J., Guo J., Wang R., Li B., Zhang Z., Gao Y.	Evidence for molecular antagonistic mechanism between mercury and selenium in rice (Oryza sativa L.): A combined study using 1, 2-dimensional electrophoresis and SR-XRF techniques.	J Trace Elem Med Biol			2017		
44991	29073469	Lin Y., Zhao Z., Zhou S., Liu L., Kong W., Chen H., Long W., Feng Z., Jiang L., Wan J.	top bending panicle1 is involved in brassinosteroid signaling and regulates the plant architecture in rice.	Plant Physiol. Biochem.	121	1-13	2017		
44992	29081785	Tan G.Z.H., Das Bhowmik SS., Hoang T.M.L., Karbaschi M.R., Johnson A.A.T., Williams B., Mundree S.G.	Finger on the Pulse: Pumping Iron into Chickpea.	Front Plant Sci	8	1755	2017		
44993	29048564	Banakar R., Alvarez Fern?ndez ?., D?az-Benito P., Abad?a J., Capell T., Christou P.	Phytosiderophores determine thresholds for iron and zinc accumulation in biofortified rice endosperm while inhibiting the accumulation of cadmium.	J. Exp. Bot.	68(17)	4983-4995	2017		
44994	28987861	Hwang S.G., Chapagain S., Lee J.W., Han A.R., Jang C.S.	Genome-wide transcriptome profiling of genes associated with arsenate toxicity in an arsenic-tolerant rice mutant.	Plant Physiol. Biochem.	120	40-51	2017		
44995	29223342	Qi Z., Yu J., Shen L., Yu Z., Yu M., Du Y., Zhang R., Song T., Yin X., Zhou Y., Li H., Wei Q., Liu Y.	Enhanced resistance to rice blast and sheath blight in rice (oryza sativa L.) by expressing the Oxalate decarboxylase protein Bacisubin from Bacillus subtilis.	Plant Sci.	265	51-60	2017		
45001	29123646	Mondal T.K., Rawal H.C., Gaikwad K., Sharma T.R., Singh N.K.	First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza.	F1000Res	6	1750	2017		
45002	28953215	Zhong M., Li S., Huang F., Qiu J., Zhang J., Sheng Z., Tang S., Wei X., Hu P.	The Phosphoproteomic Response of Rice Seedlings to Cadmium Stress.	Int J Mol Sci	18(10)		2017		
45008	28979289	Krishnan A., Gupta C., Ambavaram M.M.R., Pereira A.	RECoN: Rice Environment Coexpression Network for Systems Level Analysis of Abiotic-Stress Response.	Front Plant Sci	8	1640	2017		
45009	28912524	Begemann M.B., Gray B.N., January E., Gordon G.C., He Y., Liu H., Wu X., Brutnell T.P., Mockler T.C., Oufattole M.	Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases.	Sci Rep	7(1)	11606	2017		
45010	28973974	Nepal M.P., Andersen E.J., Neupane S., Benson B.V.	Comparative Genomics of Non-TNL Disease Resistance Genes from Six Plant Species.	Genes (Basel)	8(10)		2017		
45012	28927835	Xiao W., Jiang L., Wang W., Wang R., Fan J.	Evaluation of rice tetraticopeptide domain-containing thioredoxin as a novel solubility-enhancing fusion tag in Escherichia coli.	J. Biosci. Bioeng.	125(2)	160-167	2018		
45013	29158631	Zhu S., Huang R., Wai H.P., Xiong H., Shen X., He H., Yan S.	Mapping quantitative trait loci for heat tolerance at the booting stage using chromosomal segment substitution lines in rice.	Physiol Mol Biol Plants	23(4)	817-825	2017		
45014	28885178	Zhou X., Bai X., Xing Y.	A Rice Genetic Improvement Boom by Next Generation Sequencing.	Curr Issues Mol Biol	27	109-126	2018		
45015	29025389	Pan X., Fang Y., Yang X., Zheng D., Chen L., Wang L., Xiao J., Wang X.E., Wang K., Cheng Z., Yu H., Zhang W.	Chromatin states responsible for the regulation of differentially expressed genes under 60Co~gamma ray radiation in rice.	BMC Genomics	18(1)	778	2017		
45016	29016662	Dong L., Liu S., Xu P., Deng W., Li X., Tharreau D., Li J., Zhou J., Wang Q., Tao D., Yang Q.	Fine mapping of Pi57(t) conferring broad spectrum resistance against Magnaporthe oryzae in introgression line IL-E1454 derived from Oryza longistaminata.	PLoS ONE	12(10)	e0186201	2017	PI57	Pi57, Pi57(t)
45017	29241565	Li X., He Y., Yang J., Jia Y.H., Zeng H.L.	Gene mapping and transcriptome profiling of a practical photo-thermo-sensitive rice male sterile line with seedling-specific green-revertible albino leaf.	Plant Sci.	266	37-45	2018		
45018	29085253	Nagaoka I., Sasahara H., Matsushita K., Maeda H., Fukuoka S., Yamaguchi M., Shigemune A., Miura K.	Quantitative trait loci analysis of grain appearance in Oryza sativa L. 'Emi-no-kizuna'.	Breed. Sci.	67(4)	421-426	2017		
45019	28893659	Sarkar A., Ghosh P.K., Pramanik K., Mitra S., Soren T., Pandey S., Mondal M.H., Maiti T.K.	A halotolerant Enterobacter sp. displaying ACC deaminase activity promotes rice seedling growth under salt stress.	Res. Microbiol.	169(1)	20-32	2018		
45020	28879498	Liang Y., Zheng J., Yan C., Li X., Liu S., Zhou J., Qin X., Nan W., Yang Y., Zhang H.	Locating QTLs controlling overwintering trait in Chinese perennial Dongxiang wild rice.	Mol. Genet. Genomics	293(1)	81-93	2018		
45021	28956755	Reynoso M.A., Pauluzzi G.C., Kajala K., Cabanlit S., Velasco J., Bazin J., Deal R., Sinha N.R., Brady S.M., Bailey-Serres J.	Nuclear Transcriptomes at High Resolution Using Retooled INTACT.	Plant Physiol.	176(1)	270-281	2018		
45022	28916800	Wei H., Lou Q., Xu K., Yan M., Xia H., Ma X., Yu X., Luo L.	Alternative splicing complexity contributes to genetic improvement of drought resistance in the rice maintainer HuHan2B.	Sci Rep	7(1)	11686	2017		
45023	28883457	Zhu M., Liu D., Liu W., Li D., Liao Y., Li J., Fu C., Fu F., Huang H., Zeng X., Ma X., Wang F.	QTL mapping using an ultra-high-density SNP map reveals a major locus for grain yield in an elite rice restorer R998.	Sci Rep	7(1)	10914	2017		
45024	28871108	Lv Q., Huang Z., Xu X., Tang L., Liu H., Wang C., Zhou Z., Xin Y., Xing J., Peng Z., Li X., Zheng T., Zhu L.	Allelic variation of the rice blast resistance gene Pid3 in cultivated rice worldwide.	Sci Rep	7(1)	10362	2017		
45025	28905991	De Vleesschauwer D., Filipe O., Hoffman G., Seifi H.S., Haeck A., Canlas P., Van Bockhaven J., De Waele E., Demeestere K., Ronald P., Hofte M.	Target of rapamycin signaling orchestrates growth-defense trade-offs in plants.	New Phytol.	217(1)	305-319	2018		
45026	28893199	Ganie S.A., Debnath A.B., Gumi A.M., Mondal T.K.	Comprehensive survey and evolutionary analysis of genome-wide miRNA genes from ten diploid Oryza species.	BMC Genomics	18(1)	711	2017		
45027	28867871	Singh K., McClean C.J., B?ker P., Hartley S.E., Hill J.K.	Mapping regional risks from climate change for rainfed rice cultivation in India.	Agric Syst	156	76-84	2017		
45028	29077764	Ishikawa R., Iwata M., Taniko K., Monden G., Miyazaki N., Orn C., Tsujimura Y., Yoshida S., Ma J.F., Ishii T.	Detection of quantitative trait loci controlling grain zinc concentration using Australian wild rice, Oryza meridionalis, a potential genetic resource for biofortification of rice.	PLoS ONE	12(10)	e0187224	2017		
45029	28988325	Tang H., Xie Y., Liu Y.G., Chen L.	Advances in understanding the molecular mechanisms of cytoplasmic male sterility and restoration in rice.	Plant Reproduction	30(4)	179-184	2017		
45030	29086189	Chandran A.K.N., Bhatnagar N., Yoo Y.H., Moon S., Park S.A., Hong W.J., Kim B.G., An G., Jung K.H.	Meta-expression analysis of unannotated genes in rice and approaches for network construction to suggest the probable roles.	Plant Mol. Biol.	96(1-2)	17-34	2018		
45031	29056456	Wang P., Khoshravesh R., Karki S., Tapia R., Balahadia C.P., Bandyopadhyay A., Quick W.P., Furbank R., Sage T.L., Langdale J.A.	Re-creation of a Key Step in the Evolutionary Switch from C3 to C4 Leaf Anatomy.	Curr. Biol.	27(21)	3278-3287.e6	2017		
45032	29183614	Niu J., Nie D., Yu D., Wu Q., Yu L., Yao Z., Du X., Li J.	Synthesis, fungicidal activity and phloem mobility of phenazine-1-carboxylic acid-alanine conjugates.	Pestic Biochem Physiol	143	8-13	2017		
45033	29163604	Sandhu N., Subedi S.R., Yadaw R.B., Chaudhary B., Prasai H., Iftekharuddaula K., Thanak T., Thun V., Battan K.R., Ram M., Venkateshwarlu C., Lopena V., Pablico P., Maturan P.C., Cruz M.T.S., Raman K.A., Collard B., Kumar A.	Root Traits Enhancing Rice grain yield under Alternate Wetting and Drying Condition.	Front Plant Sci	8	1879	2017		
45034	29048113	Kouzai Y., Kimura M., Watanabe M., Kusunoki K., Osaka D., Suzuki T., Matsui H., Yamamoto M., Ichinose Y., Toyoda K., Matsuura T., Mori I.C., Hirayama T., Minami E., Nishizawa Y., Inoue K., Onda Y., Mochida K., Noutoshi Y.	Salicylic acid-dependent immunity contributes to resistance against Rhizoctonia solani, a necrotrophic fungal agent of sheath blight, in rice and Brachypodium distachyon.	New Phytol.	217(2)	771-783	2018		
45035	29025391	Liu E., Zeng S., Chen X., Dang X., Liang L., Wang H., Dong Z., Liu Y., Hong D.	Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping.	BMC Genet.	18(1)	89	2017		
45036	29047256	Chae S., Kim J.S., Jun K.M., Lee S.B., Kim M.S., Nahm B.H., Kim Y.K.	Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq.	Mol. Cells	40(10)	714-730	2017		
45037	29073903	Walitang D.I., Kim K., Madhaiyan M., Kim Y.K., Kang Y., Sa T.	Characterizing endophytic competence and plant growth promotion of bacterial endophytes inhabiting the seed endosphere of Rice.	BMC Microbiol.	17(1)	209	2017		
45038	28967675	Xiao G., Zhou J., Lu X., Huang R., Zhang H.	Excessive UDPG resulting from the mutation of UAP1 causes programmed cell death by triggering reactive oxygen species accumulation and caspase-like activity in rice.	New Phytol.	217(1)	332-343	2018		
45039	29071531	Kaur G., Guruprasad K., Temple B.R.S., Shirvanyants D.G., Dokholyan N.V., Pati P.K.	Structural complexity and functional diversity of plant NADPH oxidases.	Amino Acids	50(1)	79-94	2018		
45040	29308123	Jin X., Chen Y., Liu P., Li C., Cai X., Rong J., Lu B.R.	Introgression from cultivated rice alters genetic structures of wild relative populations: implications for in situ conservation.	AoB Plants	10(1)	plx055	2018		
45041	28976110	Tayi L., Kumar S., Nathawat R., Haque A.S., Maku R.V., Patel H.K., Sankaranarayanan R., Sonti R.V.	A mutation in an exoglucanase of Xanthomonas oryzae pv. oryzae, which confers an endo mode of activity, affects bacterial virulence, but not the induction of immune responses, in rice.	Mol. Plant Pathol.			2017		
45042	29089547	Tang L., Mao B., Li Y., Lv Q., Zhang L., Chen C., He H., Wang W., Zeng X., Shao Y., Pan Y., Hu Y., Peng Y., Fu X., Li H., Xia S., Zhao B.	Knockout of OsNramp5 using the CRISPR/Cas9 system produces low Cd-accumulating indica rice without compromising yield.	Sci Rep	7(1)	14438	2017		
45043	28910491	Han H., Vila-Aiub MM., Jalaludin A., Yu Q., Powles S.B.	A double EPSPS gene mutation endowing glyphosate resistance shows a remarkably high resistance cost.	Plant Cell Environ.	40(12)	3031-3042	2017		
45044	28994318	James B., Zhang W., Sun P., Wu M., Li H.H., Khaliq M.A., Jayasuriya P., James S., Wang G.	Tungsten (W) bioavailability in paddy rice soils and its accumulation in rice (Oryza sativa).	Int J Environ Health Res	27(6)	487-497	2017		
45045	12609740	Tsuji H., Tsutsumi N., Sasaki T., Hirai A., Nakazono M.	Organ-specific expressions and chromosomal locations of two mitochondrial aldehyde dehydrogenase genes from rice (Oryza sativa L.), ALDH2a and ALDH2b.	Gene	305(2)	195-204	2003	ALDH2A,ALDH2B	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsALDH2B
45046	12832071	Tsuji H., Meguro N., Suzuki Y., Tsutsumi N., Hirai A., Nakazono M.	Induction of mitochondrial aldehyde dehydrogenase by submergence facilitates oxidation of acetaldehyde during re-aeration in rice.	FEBS Lett.	546(2-3)	369-73	2003	ALDH2A,ALDH2B	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsALDH2B
45047	20634950	Simeon O Kotchoni, Jose C Jimenez-Lopez, Gao D., Edwards V., Emma W Gachomo, Venu M Margam, Manfredo J Seufferheld	Modeling-dependent protein characterization of the rice aldehyde dehydrogenase (ALDH) superfamily reveals distinct functional and structural features.	PLoS ONE	5(7)	e11516	2010	ALDH2A,_     ,SK2(T)(SCL, FGR),ALDH1A,ALDH3B1    ,ALDH22A1,ALDH3H1      ,ALDH11A3,P5CS,_,ALDH3E2     ,ALDH3H2    ,ALDH2B1  ,ALDH5F1,ALDH3E1,ALDH2C1   ,ALDH6B2     ,ALDH7,BAD1,ALDH12B1      ,ALDH2B2	OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsALDH12A1, ALDH12A1   ,sk2(t)(scl, fgr), fgr, scl, BAD2, BADH2, sk2, OsBADH2, Badh2, badh2, Os2AP, BADH-2, OsALDH10A8, ALDH10A8 ,ALDH1a, Aldh1a, OsALDH1a, OsALDH2C4, ALDH2C4 ,OsALDH3B1    ,OsALDH22, ALDH22, OsALDH22A1, ,OsALDH3H1      ,OsALDH11A3, GAPN,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,P5CS2, OsP5CS2, OsALDH18B2, ALDH18B2 ,OsALDH3E2     ,OsALDH3H2 ,OsALDH2B1  ,OsALDH5F1, SSADH,OS-ALDH, OsALDH3E1,OsALDH2C1   ,OsALDH6B2  ,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6 ,Badh1, badh1, BAD1, BADH1, OsBADH1, BADH, OsALDH10A5, ALDH10A5 ,OsALDH12B1   ,OsALDH2B2
45048	27637926	Liang Z., Wang L., Pan Q.	A New Recessive Gene Conferring Resistance Against Rice Blast.	Rice (N Y)	9(1)	47	2016	PI66	Pi66, Pi66(t)
45049	0	WANG Zhong-wei, ZHANG Tian-quan, XING Ya-di ZENG Xiao-qin, WANG Ling, LIU Zhong-xian, SHI Jun-qiong, ZHU Xiao-yan, MA Ling, LI Yun-Feng, LING Ying-Hua, SANG Xian-chun, HE Guang-Hua	YGL9, encoding the putative chloroplast signal recognition particle 43 kDa protein in rice, is involved in chloroplast development	Journal of Integrative Agriculture	15(5)	944-953	2015	_,_,PETE,_,NDHA,YGL1,PSAL,FGL,ELL,PSBO,YGL98,YGL9	Lhca6, OsLhca6,Lhcb1.1 OsLhcb1.1, lhcB,petE, petG,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,ndhA,OsYGL1, CHLG, Ygl1, CS, OsCHLG,PsaL,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,PsbO, psbO,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,OscpSRP43, cpSRP43, PGL3
45050	0	YANG Hai-lian, LIU Min, GUO Min, LI Rong-de, ZHANG Hong-gen, YAN Chang-jie	Genetic Analysis and Position Cloning of a yellow Ggren leaf 10 (ygl10) Gene, Responsible for Leaf Color in Rice	hin J Rice Sci	28(1)	41-48	2014	YGL10	CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
45051	0	WANG Ya-qin, SHI Jun-qiong, ZHANG Ting, LI Yan, ZHANG Tian-quan, ZHANG Xiao-long, SANG Xian-chun, LING Ying-Hua, HE Guang-Hua	Characterization and Candidate Gene Analysis of yellow-green leaf Mutant YGL13 in Rice (Oryza sativa)	Scientia Agricultura Sinica	48(21)	4197-4208	2015	YGL13	OsSIG1, SIG1, Os-SigA, OsSigA, Os Sig1, SIGA
45052	0	Shi J., Wang Y., Guo S., Ma L., Wang Z., Zhu X., XianChun Sang, Ling Y., Wang N., Zhao F., He G.	Molecular Mapping and Candidate Gene Analysis of a yellow-green leaf 6 (YGL6) Mutant in Rice	Crop Sci.	55	669-680	2015	YGL6 	CSP41b, LGL1
45053	0	Tian X., Ling Y., Fang L., Du P., Sang X., Zhao F., Li Y., Xie R., He G.	Gene cloning and functional analysis of yellow green leaf3 (ygl3) gene during the whole-plant growth stage in rice	Genes Genomics	35(1)	87-93	2013	YGL98	OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3
45054	0	Xu X., Kayashi N., chun-Tai Wang, Fukuoka S., Kawasaki S., Takatsuji H., Chang-Jie Jiang	Rice blast resistance gene Pikahei-1(t), a member of a resistance gene cluster on chromosome 4, encodes a nucleotide-binding site and leucine-rich repeat protein	Molecular Breeding	34(2)	691-700	2014	PI63	Pi63, Pikahei-1(t), RGA3, RGA1-NB
45055	0	Lei C., Hao K., Yang Y., Ma J., Wang S., Wang J., Cheng Z., Zhao S., Zhang X., Guo X., Wang C., Wan J.	Identification and fine mapping of two blast resistance genes in rice cultivar 93-11	The Crop Journal	1(1)	2-14	2013	PI60,PI61	Pi60(t),Pi61(t)
45056	29140092	Wetterhorn K.M., Gabardi K., Michlmayr H., Malachova A., Busman M., McCormick S.P., Berthiller F., Adam G., Rayment I.	Determinants and Expansion of Specificity in a Trichothecene UDP-Glucosyltransferase from Oryza sativa.	Biochemistry	56(50)	6585-6596	2017		
45057	29093216	Hu L., Wu Y., Wu D., Rao W., Guo J., Ma Y., Wang Z., Shangguan X., Wang H., Xu C., Huang J., Shi S., Chen R., Du B., Zhu L., He G.	The Coiled-Coil and Nucleotide Binding Domains of BROWN PLANTHOPPER RESISTANCE14 Function in Signaling and Resistance against Planthopper in Rice.	Plant Cell	29(12)	3157-3185	2017	AOS2,PAL1,_,_,PR10A,PR1B,RLCK281,NH1,_,WRKY72,_,_,WRKY46,_,PR4,PR5,BPH14	OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,Gns5, GNS5,,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsPUB56, OsRLCK281,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsWRKY72, WRKY-72,ICS1, OsICS1, OsICS, ICS,Gns9, GNS9,OsWRKY46, WRKY91, OsWRKY91,OsEDS1, EDS1,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR5, Pir2, PR-5, PR5-1,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3
45058	29158333	Chen Z.S., Liu X.F., Wang D.H., Chen R., Zhang X.L., Xu Z.H., Bai S.N.	Transcription Factor OsTGA10 Is a Target of the MADS Protein OsMADS8 and Is Required for Tapetum Development.	Plant Physiol.	176(1)	819-835	2018	CP1,_,TDR,_,MADS7,MADS24,BZIP74,MTR1	OsCP1, Os CP1,OsbHLH142, bHLH142, TIP2, OsTIP2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsAP25, Radc1, AP25,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsbZIP74, OsTGA10, TGA10 ,OsMTR1
45059	28969789	Hu S., Yu Y., Chen Q., Mu G., Shen Z., Zheng L.	OsMYB45 plays an important role in rice resistance to cadmium stress.	Plant Sci.	264	1-8	2017	CATC,CATA,_	OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsMPH1, MPH1, OsMYB45, MYB45
45060	29031031	Lin H., Yu J., Pearce S.P., Zhang D., Wilson Z.A.	RiceAntherNet: a gene co-expression network for identifying anther and pollen development genes.	Plant J.	92(6)	1076-1091	2017	_,MSP1,TDR,GAMYB,RAG,_,EAT1,PTC1,UDT1	OsTDL1A, TDL1A, MIL2, OsTDL1A/MIL2, OsTDL1a ,Msp1, OsMSP1,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsbHLH142, bHLH142, TIP2, OsTIP2,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1,Udt1, bHLH164, OsUDT1, OsbHLH164 
45061	29024118	Srivastava A.K., Zhang C., Caine R.S., Gray J., Sadanandom A.	Rice SUMO protease Overly Tolerant to Salt 1 targets the transcription factor, OsbZIP23 to promote drought tolerance in rice.	Plant J.	92(6)	1031-1043	2017	LEA3-1,LEA9,_,DHN6,BZIP23,OTS1	OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsLEA9, OsLEA5, LEA5,OsbHLH148, bHLH148,OsLEA25, LEA25, OsEnS-143, OsRAB21, RAB21,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsOTS1
45062	29103092	Saifi S.K., Passricha N., Tuteja R., Tuteja N.	Stress-induced Oryza sativa RuvBL1a is DNA-independent ATPase and unwinds DNA duplex in 3' to 5' direction.	Protoplasma	255(2)	669-684	2018	_,_,_	OsRuvBL2a, RuvBL2a, RUVBL2A,OsRuvBL1b, RuvBL1b, RUVBL1B,OsRuvBL1a, RuvBL1a, RUVBL1A
45063	29180380	Tang Y., Liu H., Guo S., Wang B., Li Z., Chong K., Xu Y.	OsmiR396d Affects Gibberellin and Brassinosteroid Signaling to Regulate Plant Architecture in Rice.	Plant Physiol.	176(1)	946-959	2018	DLT,GA20OX3,GRF6,D61,GA20OX1,BZR1,D18,KO4,MIR396D,CPS1, LIC,GID2	dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,OsGA20ox3, ga20ox3,OsGRF6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsGA20ox1, 20ox1, GA20ox-1, ga20ox1, Os20ox, C20OX2, OsGA20ox2, OsGA20ox-1, GA20ox1, GNP1,OsBZR1, Os BZR1,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsKO4, OsKOL4, KOS1, CYP701A8, OsKO2,miR396d, osa-miR396d, osa-MIR396d, OsmiR396d,OsCPS1, OsCPS1ent, OsCPS, Os CPS1, OsTPS4,OsC3H46, C3H46, OsLIC,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e
45064	29101278	Liu J., Zhou M., Delhaize E., Ryan P.R.	Altered Expression of a Malate-Permeable Anion Channel, OsALMT4, Disrupts Mineral Nutrition.	Plant Physiol.	175(4)	1745-1759	2017	ALMT8,ALMT6,ALMT1 ,ALMT4,ALMT9,ALMT3,ALMT2,PAAB1-1,ALMT5	OsALMT8,OsALMT6,OsALMT1 ,OsALMT4,OsALMT9,OsALMT3,OsALMT2,OsALMT7, ALMT7,OsALMT5
45065	29127328	Farthing E.C., Menguer P.K., Fett J.P., Williams L.E.	OsMTP11 is localised at the Golgi and contributes to Mn tolerance.	Sci Rep	7(1)	15258	2017	MTP11,MTP11.1	OsMTP11,OsMTP11.1
45066	29162892	Hu Y., Wu Q., Peng Z., Sprague S.A., Wang W., Park J., Akhunov E., Jagadish K.S.V., Nakata P.A., Cheng N., Hirschi K.D., White F.F., Park S.	Silencing of OsGRXS17 in rice improves drought stress tolerance by modulating ROS accumulation and stomatal closure.	Sci Rep	7(1)	15950	2017	GRX22,LEA3-1,RAB16C	OsGRX22, OsGRXS17, GRXS17,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,rab21, OsLEA27, rab16C
45067	29131851	Gao M., Yin X., Yang W., Lam S.M., Tong X., Liu J., Wang X., Li Q., Shui G., He Z.	GDSL lipases modulate immunity through lipid homeostasis in rice.	PLoS Pathog.	13(11)	e1006724	2017	PR10A,PR1A,PR5,GELP78,GLIP1,PR1B	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPR5, Pir2, PR-5, PR5-1,OsGELP78, OsEnS-82, EnS-82, OsGLIP2, GLIP2,OsGLIP1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
45068	28970232	Liu Y., Li J., Wei G., Sun Y., Lu Y., Lan H., Li C., Zhang S., Cao M.	Cloning, molecular evolution and functional characterization of ZmbHLH16, the maize ortholog of OsTIP2 (OsbHLH142).	Biol Open	6(11)	1654-1663	2017		
45069	29127261	Schuler M.L., Sedelnikova O.V., Walker B.J., Westhoff P., Langdale J.A.	SHORTROOT-Mediated Increase in Stomatal Density Has No Impact on Photosynthetic Efficiency.	Plant Physiol.	176(1)	757-772	2018	SHR1,SHR2	OsSHR1, OsGRAS-38, OsGRAS38, GRAS-38, GRAS38,OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15
45070	29362094	Zhong J., Peng Z., Peng Q., Cai Q., Peng W., Chen M., Yao J.	Regulation of plant height in rice by the Polycomb group genes OsEMF2b, OsFIE2 and OsCLF.	Plant Sci.	267	157-167	2018		
45071	29163628	Huang R., Hui S., Zhang M., Li P., Xiao J., Li X., Yuan M., Wang S.	A Conserved Basal Transcription Factor Is Required for the Function of Diverse TAL Effectors in Multiple Plant Hosts.	Front Plant Sci	8	1919	2017	_,SULTR3;6,TFX1,XA5,XA13	OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,OsSultr3;6, OsSul3;6, OsSULTR3;6 ,OsbZIP73, bZIP73, OsTFX1,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3
45072	29044557	Shankar A., Fernandes J.L., Kaur K., Sharma M., Kundu S., Pandey G.K.	Rice phytoglobins regulate responses under low mineral nutrients and abiotic stresses in Arabidopsis thaliana.	Plant Cell Environ.	41(1)	215-230	2018	Hb4,Hb5,Hb3,Hb1,Hb2	OsHB4, HB4, OsNSHB4, NSHB4, OsPgb1.4, Pgb1.4,OsHB5, HB5, OsPgb1.5, Pgb1.5,HB3, OsNSHB3, NSHB3, OsPgb1.3, Pgb1.3,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2
45073	29143298	Huang R., Wang Y., Wang P., Li C., Xiao F., Chen N., Li N., Li C., Sun C., Li L., Chen R., Xu Z., Zhu J., Deng X.	A single nucleotide mutation of IspF gene involved in the MEP pathway for isoprenoid biosynthesis causes yellow-green leaf phenotype in rice.	Plant Mol. Biol.	96(1-2)	5-16	2018	_,PSBA,PSAA,DXS1,_,_,_,_,_,_,YGL1	OsMCS, MCS, IspF, OsIspF,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,PsaA, psaA, PsAA1,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1,OsCMS, CMS, OsIspD, IspD,psaN,OsHDS, HDS, OsIspG, IspG,OsHDR, HDR, OsIspH, IspH,OsCMK, CMK, OsIspE, IspE,OsDXR, DXR, OsIspC, IspC,OsYGL1, CHLG, Ygl1, CS, OsCHLG
45074	29149369	Ramamoorthy R., Vishal B., Ramachandran S., Kumar P.P.	The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate.	Plant Cell Rep.	37(2)	377-385	2018	PSAF	Usaf, OsPS1-F, PS1-F
45075	29154991	Wu W., Zhang Y., Zhang M., Zhan X., Shen X., Yu P., Chen D., Liu Q., Sinumporn S., Hussain K., Cheng S., Cao L.	The RICE CONSTANS-like protein OsCOL15 suppresses flowering by promoting Ghd7 and repressing RID1.	Biochem. Biophys. Res. Commun.	495(1)	1349-1355	2018	_,EHD2/RID1,GHD7,RAP1B,HD3A,EF1,RAP1A,RFT1	OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, COL15, OsCOL15/OsBBX26, Hd1-3,Ehd2, RID1, OsID1, ID1, OsId1, OsID, Ehd2/RID1/OsId1, RID1/OsID1/Ehd2,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
45076	29181013	Gupta P., Nutan K.K., Singla-Pareek SL., Pareek A.	Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice.	Front Plant Sci	8	1944	2017	GATA24,_,GATA2,GATA28,GATA19,GATA25,GATA20,GATA5,GATA7,GATA6,GATA18 ,_,GATA27,GATA26,GATA22,_,GATA17,GATA10,GATA9,CGA1,GATA12,GATA23,GATA13,NL1,GATA8,GATA16,GATA4,GATA1 	OsGATA24,OsGATA3, GATA3,OsGATA2, OsGATA2a, OsGATA2b,OsGATA28,OsTIFY1b, TIFY1B, OsCCT15, OsGATA19, OsGATA19a, OsGATA19b,OsGATA25,OsTIFY2b, TIFY2B, OsCCT24, OsGATA20,OsGATA5,OsGATA7,OsGATA6, OsGATA1, GATA1,OsTIFY1A, TIFY1A, OsCCT13, OsGATA18, OsGATA18a, OsGATA18b,OsGATA21, GATA21, OsGATA21a, OsGATA21b,OsGATA27,OsGATA26,OsGATA22,OsGATA8, GATA8, OsGATA14, GATA14,OsTIFY2a, OsCCT04, OsGATA17, OsGATA17a, OsGATA17b,OsGATA10,OsGATA9,Cga1, OsCga1, OsCGA1, OsGATA11, GATA11,OsGATA12,OsGATA23, OsGATA23a, OsGATA23b,OsGATA13,nl1, OsGATA15, GATA15,OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b,OsGATA16, OsGNC, GNC,OsGATA4,OsGATA1, OsGATA6, GATA6
45077	29045742	Lv Y., Shao G., Qiu J., Jiao G., Sheng Z., Xie L., Wu Y., Tang S., Wei X., Hu P.	White Leaf and Panicle 2, encoding a PEP-associated protein, is required for chloroplast biogenesis under heat stress in rice.	J. Exp. Bot.	68(18)	5147-5160	2017	TRXZ,WLP2,HSA1	OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz,OsWLP2, OsFLN1, FLN1,OsFLN2, FLN2 , HSA1/OsFLN2
45078	29128357	Mao X., Zheng Y., Xiao K., Wei Y., Zhu Y., Cai Q., Chen L., Xie H., Zhang J.	OsPRX2 contributes to stomatal closure and improves potassium deficiency tolerance in rice.	Biochem. Biophys. Res. Commun.	495(1)	461-467	2018	_	BAS1, OsTPX, Os2-Cys PrxA, 2-Cys PrxA, Os2-CysPrxA, 2-CysPrxA, 2CYSPRXA, OsPRX2, PRX2
45079	29194635	Desaki Y., Kouzai Y., Ninomiya Y., Iwase R., Shimizu Y., Seko K., Molinaro A., Minami E., Shibuya N., Kaku H., Nishizawa Y.	OsCERK1 plays a crucial role in the lipopolysaccharide-induced immune response of rice.	New Phytol.	217(3)	1042-1049	2018		
45080	29036625	Jia H., Zhang S., Wang L., Yang Y., Zhang H., Cui H., Shao H., Xu G.	OsPht1;8, a phosphate transporter, is involved in auxin and phosphate starvation response in rice.	J. Exp. Bot.	68(18)	5057-5068	2017		
45081	29237723	Wang Z., Tian X., Zhao Q., Liu Z., Li X., Ren Y., Tang J., Fang J., Xu Q., Bu Q.	The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.	Plant Cell	30(1)	228-244	2018	BDG,DHS,ROC4	Os-BDG, OsBDG,,Roc4(t), Roc4, GL2-4
45082	29229750	Maher K.A., Bajic M., Kajala K., Reynoso M., Pauluzzi G., West D.A., Zumstein K., Woodhouse M., Bubb K., Dorrity M.W., Queitsch C., Bailey-Serres J., Sinha N., Brady S.M., Deal R.B.	Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules.	Plant Cell	30(1)	15-36	2018		
45083	29193996	Zheng X.M., Gong T., Ou H.L., Xue D., Qiao W., Wang J., Liu S., Yang Q., Olsen K.M.	Genome-wide association study of rice grain width variation.	Genome	61(4)	233-240	2018		
45084	29223357	Zhang L., Kong H., Ma H., Yang J.	Phylogenomic detection and functional prediction of genes potentially important for plant meiosis.	Gene	643	83-97	2018		
45085	29268034	Wang Q.Z., Downie S.R., Chen Z.X.	Genome-wide searches and molecular analyses highlight the unique evolutionary path of Flavone synthase I (FNSI) in Apiaceae.	Genome	61(2)	103-109	2018		
45086	29234462	Huang J., Li Y., Wang Y., Chen Y., Liu M., Wang Y., Zhang R., Zhou S., Li J., Tu Y., Hao B., Peng L., Xia T.	A precise and consistent assay for major wall polymer features that distinctively determine biomass saccharification in transgenic rice by near-infrared spectroscopy.	Biotechnol Biofuels	10	294	2017	GH9B3,GH9B6,CEL9A,GH9C1,GH10-5,GH9B16,GH10-6,GH10-4,GH10-3,GH9B1,CEL9D,GH10-7	OsGH9B3,OsGH9B6,OsCel9A, OsGH9C3, GH9C3, OsGLU5, Cel9A ,OsGH9C1,OsGH10-5,OsGH9B16,OsGH10-6,OsGH10-4,OsGH10-3,OsGH9B1,OsCel9D, Cel9D, OsGLU1, OsGH9A1, GH9A1,OsGH10-7
45087	29312378	Fu J., Wu H., Ma S., Xiang D., Liu R., Xiong L.	OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice.	Front Plant Sci	8	2108	2017	NCED3,EG2,_,DREB1B,RAB16A,LEA3-1,DREB1A,_,_,_	OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsbHLH148, bHLH148,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsCCD1, CCD1 ,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35
45088	29260397	Park Y.C., Chapagain S., Jang C.S.	The microtubule-associated RING finger protein 1 (OsMAR1) acts as a negative regulator for salt-stress response through the regulation of OCPI2 (O. sativa chymotrypsin protease inhibitor 2).	Planta	247(4)	875-886	2018	OCPI2,_	OsSRO1a, SRO1a,OsRFP, OsMAR1, MAR1
45089	29131712	Thitisaksakul M., Dong S., Beckles D.M.	How rice Glycogen Synthase Kinase-like 5 (OsGSK5) integrates salinity stress response to source-sink adaptation: A proposed model.	Plant Signal Behav	12(12)	e1403708	2017	_	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, TGW3, OsGSK5/OsSK41, OsSK41/OsGSK5
45090	29270910	Sukawa Y., Okamoto T.	Cell cycle in egg cell and its progression during zygotic development in rice.	Plant Reproduction	31(1)	107-116	2018	CDC2-2,_,CDC2-1,KRP2,CDKB;1	cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,Ores;Wee1, OsWEE1, WEE1,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,OsKRP2, OsiICK2, Orysa;KRP2, OrysaICK2, Orysa;ICK2,CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1
45091	29259615	An B., Lan J., Deng X., Chen S., Ouyang C., Shi H., Yang J., Li Y.	Silencing of D-lactate dehydrogenase Impedes Glyoxalase System and Leads to Methylglyoxal Accumulation and Growth Inhibition in Rice.	Front Plant Sci	8	2071	2017	D-LDH 	OsD-LDH
45092	29282559	Yang J., Wang L., Mao C., Lin H.	Characterization of the rice NLA family reveals a key role for OsNLA1 in phosphate homeostasis.	Rice (N Y)	10(1)	52	2017	PT8,PT2,PT1,PT4,PT10,_,PT6,_	OsPT8, PHT1-8, OsPht1;8, Pht1;8,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsPT1, PHT1-1, OsPht1;1, Pht1;1,OsPT4, PHT1-4, OsPht1;4, PHT1-2,OsPT10, PHT1-10, OsPht1;10,OsRFPHC-1, OsNLA2, NLA2 ,OsPT6, PHT1-6, OsPht1;6, OsLPT6:1, OsLPT1, OsPT6:1, Pht1;6, LPT6:1, LPT1, PT6:1,OsRFPHC-13, OsNLA, NAL, OsNLA1, NAL1
45093	29217595	Shao J.F., Yamaji N., Liu X.W., Yokosho K., Shen R.F., Ma J.F.	Preferential Distribution of Boron to Developing Tissues Is Mediated by the Intrinsic Protein OsNIP3.	Plant Physiol.	176(2)	1739-1750	2018	NIP3;1,LSI1	OsNIP3;1, NIP3-1, OsNIP3.1, NIP3.1,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1
45094	29269023	Wang L., Yuan J., Ma Y., Jiao W., Ye W., Yang D.L., Yi C., Chen Z.J.	Rice Interploidy Crosses Disrupt Epigenetic Regulation, Gene Expression, and Seed Development.	Mol Plant	11(2)	300-314	2018	MADS78,MFO1,CIN1,WX1,CESA8,FLO2,WOX5,FIE1,FIE2,_,4CL5,CLF,CMT2,RAG,MET1B,MET1A,RDR1	OsMADS78,OsMADS6, MADS6, OsMFO1,OSCIN1, OsCIN1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsCesA8, OsCESA8, OS_CESA08, CesA8,flo2, flo3(t), Osflo2, Osflo3(t), Osflo-2, flo-2 ,OsWOX2, Os WOX2, WOX2, OsWOX5, OsWOX2L, WOX2L,OsFIE1, OsWD40-154, OsEnS-116, OsFIE1/OsWD40-154, WD40-154 ,OsFIE2, FIE, OsWD40-153,OsLTP1.20, OsLtpI.20, LTP1.20, OsLTPL14, LTPL14,Os4CL5, 4CL3, Os4CL3,OsSET24, SDG711, EZ1, OsCLF,OsCMT2, OsCMT3a, CMT3a,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsMET1b, OsMET1-2, MET1b, MET1,OsMET1a, OsMET1-1, MET1a, MET1-1,OsRDR1
45095	29242377	Wang J., Wang S., Hu K., Yang J., Xin X., Zhou W., Fan J., Cui F., Mou B., Zhang S., Wang G., Sun W.	The Kinase OsCPK4 Regulates a Buffering Mechanism That Fine-Tunes Innate Immunity.	Plant Physiol.	176(2)	1835-1849	2018	PR10A,RLCK176,PAL1,CDPK4,RLCK57	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsRLCK176,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsCDPK4, OsCPK4, CPK4, CDPK1,OsRLCK57
45096	28981755	Zhang H., Zhao Y., Zhou D.X.	Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes.	Nucleic Acids Res.	45(21)	12241-12255	2017	GAPC,_	OsGapC3, OGapC3, OsGAPDH1, GAPDH1,osSRT701, OsSIRT701, OsSRT1, SRT1, OS-SIR2
45097	29312373	Park H.L., Bhoo S.H., Kwon M., Lee S.W., Cho M.H.	Biochemical and Expression Analyses of the Rice Cinnamoyl-CoA reductase Gene Family.	Front Plant Sci	8	2099	2017	CCR18,CCR28,CCR30,CCR22,_,CCR24,CCR21,CCR32,CCR34,CCR1,CCR17,CCR19,CCR10,CCR4,CCR23,_,CCR13,CCR27,CCR35,CCR3,CCR16,CCR20,CCR5,CCR6,_,CCR7,_,CCR31,CCR26,CCR8,CCR11,CCR29,CCR33	OsCCR, CCR, OsCCR18,OsCCR28,OsCCR30,OsCCR22,Snl6, OsCCR2, CCR2 ,OsCCR24,OsCCR21 ,OsCCR32,OsCCR34,OsCCR1,OsCCR17,OsCCR19 ,OsCCR10, CCR10,OsCCR4, OsCCR1, CCR1 ,OsCCR23,CCR1, OsCCR1, OsCCR14, CCR14 ,OsCCR13,OsCCR27,OsCCR35,OsCCR3,OsCCR16,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsCCR5, OsCCR2, CCR2,OsCCR6,CCR1, OsCCR1, OsCCR12, CCR12 ,OsCCR7,OsCCR15, CCR15 ,OsCCR31,OsCCR26,OsCCR8,OsCCR11,OsCCR29,OsCCR33
45098	29312424	Ye Y., Li P., Xu T., Zeng L., Cheng D., Yang M., Luo J., Lian X.	<i>OsPT4</i> Contributes to Arsenate Uptake and Transport in Rice.	Front Plant Sci	8	2197	2017		
45099	29326740	Ansari A., Wang C., Wang J., Wang F., Liu P., Gao Y., Tang Y., Zhao K.	Engineered Dwarf Male-Sterile Rice: A Promising Genetic Tool for Facilitating Recurrent Selection in Rice.	Front Plant Sci	8	2132	2017	SD1,EAT1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD
45100	29285618	Chapagain S., Park Y.C., Kim J.H., Jang C.S.	Oryza sativa salt-induced RING E3 ligase 2 (OsSIRP2) acts as a positive regulator of transketolase in plant response to salinity and osmotic stress.	Planta	247(4)	925-939	2018	_,DXS1	OsRFP, OsSIRP2, SIRP2,CLA1, OsDXS1, dxs1, OsDXS, DXS, OsTKL1, TKL1
45101	29281685	Luebbert C.C., Clarke T.M., Pointet R., Frahm G.E., Tam S., Lorbetskie B., Sauv? S., Johnston M.J.W.	Nanoparticle size and production efficiency are affected by the presence of fatty acids during albumin nanoparticle fabrication.	PLoS ONE	12(12)	e0189814	2017		
45102	29213047	Peng M., Shahzad R., Gul A., Subthain H., Shen S., Lei L., Zheng Z., Zhou J., Lu D., Wang S., Nishawy E., Liu X., Tohge T., Fernie A.R., Luo J.	Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance.	Nat Commun	8(1)	1975	2017	UGT706G6,UGT706C1,UGT706D1,UGT706J1,UGT706E2,UGT706B1,UGT707A3,UGT706D3,UGT706C4,UGT707A2,UGT705A2,UGT706C3,UGT707A5,UGT88C3,UGT706E1,UGT706D2,UGT707A4,UGT88C2,UGT706F1,_,UGT705A1	OsUGT706G6,OsUGT706C1,UGT, OsUGT706D1,OsUGT706J1,OsUGT706E2,OsUGT706B1,OsUGT707A3,OsUGT706D3,OsUGT706C4,UGT, OsUGT707A2,OsUGT705A2,OsUGT706C3,OsUGT707A5,OsUGT88C3,OsUGT706E1,OsUGT706D2,OsUGT707A4,OsUGT88C2,OsUGT706F1,UGT705A3, OsUGT705A3,OsUGT705A1
45103	28801881	Shah S.H., Noureen A., Deeba F., Sultana T., Dukowic-Schulze S., Chen C., Naqvi S.M.S.	Transgenic Analysis Reveals 5' Abbreviated OsRGLP2 Promoter(s) as Responsive to Abiotic Stresses.	Mol. Biotechnol.	59(11-12)	459-468	2017		
45104	29255144	Liu C., Chen G., Li Y., Peng Y., Zhang A., Hong K., Jiang H., Ruan B., Zhang B., Yang S., Gao Z., Qian Q.	Characterization of a major QTL for manganese accumulation in rice grain.	Sci Rep	7(1)	17704	2017		
45105	29229567	Fu S., Xu Y., Li C., Li Y., Wu J., Zhou X.	Rice Stripe Virus Interferes with S-acylation of Remorin and Induces Its Autophagic Degradation to Facilitate Virus Infection.	Mol Plant	11(2)	269-287	2018	REM1.4	OsREM1.4
45106	29262706	Yumnam J.S., Rai M., Tyagi W.	In silico characterisation of novel rice transcripts differentially expressed in phosphorus dificient conditions suggests a role of these transcripts in multiple abiotic stresses.	Acta. Biol. Hung.	68(4)	398-411	2017		
45107	29257952	Zhang Z., Li J., Li F., Liu H., Yang W., Chong K., Xu Y.	OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.	Dev. Cell	43(6)	731-743.e5	2017	TPP1,MSRMK2,_,_	OsTPP1, OsTPS,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsHOS1, HOS1,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1
45108	29186482	Niu M., Wang Y., Wang C., Lyu J., Wang Y., Dong H., Long W., Wang D., Kong W., Wang L., Guo X., Sun L., Hu T., Zhai H., Wang H., Wan J.	ALR encoding dCMP deaminase is critical for DNA damage repair, cell cycle progression and plant development in rice.	J. Exp. Bot.	68(21-22)	5773-5786	2017	ST2	ALR, OsDCD, DCD
45109	29358653	Guo J., Xu C., Wu D., Zhao Y., Qiu Y., Wang X., Ouyang Y., Cai B., Liu X., Jing S., Shangguan X., Wang H., Ma Y., Hu L., Wu Y., Shi S., Wang W., Zhu L., Xu X., Chen R., Feng Y., Du B., He G.	Bph6 encodes an exocyst-localized protein and confers broad resistance to planthoppers in rice.	Nat. Genet.	50(2)	297-306	2018	EXO70X1,BPH6	OsEXO70X1, OsExo70X1, OrysaX1_Exo70, OsEXO70E1, OsExo70E1, EXO70E1,Bph6
45110	29358651	Stein J.C., Yu Y., Copetti D., Zwickl D.J., Zhang L., Zhang C., Chougule K., Gao D., Iwata A., Goicoechea J.L., Wei S., Wang J., Liao Y., Wang M., Jacquemin J., Becker C., Kudrna D., Zhang J., Londono C.E.M., Song X., Lee S., Sanchez P., Zuccolo A., Ammiraju J.S.S., Talag J., Danowitz A., Rivera L.F., Gschwend A.R., Noutsos C., Wu C.C., Kao S.M., Zeng J.W., Wei F.J., Zhao Q., Feng Q., El Baidouri M., Carpentier M.C., Lasserre E., Cooke R., Rosa Farias DD., da Maia LC., Dos Santos RS., Nyberg K.G., McNally K.L., Mauleon R., Alexandrov N., Schmutz J., Flowers D., Fan C., Weigel D., Jena K.K., Wicker T., Chen M., Han B., Henry R., Hsing Y.C., Kurata N., de Oliveira AC., Panaud O., Jackson S.A., Machado C.A., Sanderson M.J., Long M., Ware D., Wing R.A.	Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.	Nat. Genet.	50(2)	285-296	2018		
45111	29444864	Koide Y., Ogino A., Yoshikawa T., Kitashima Y., Saito N., Kanaoka Y., Onishi K., Yoshitake Y., Tsukiyama T., Saito H., Teraishi M., Yamagata Y., Uemura A., Takagi H., Hayashi Y., Abe T., Fukuta Y., Okumoto Y., Kanazawa A.	Lineage-specific gene acquisition or loss is involved in interspecific hybrid sterility in rice.	Proc. Natl. Acad. Sci. U.S.A.	115(9)	E1955-E1962	2018	_,S1,_	OsTP1, TP1,,SSP 
45112	29463697	Ma B., Zhou Y., Chen H., He S.J., Huang Y.H., Zhao H., Lu X., Zhang W.K., Pang J.H., Chen S.Y., Zhang J.S.	Membrane protein MHZ3 stabilizes OsEIN2 in rice by interacting with its Nramp-like domain.	Proc. Natl. Acad. Sci. U.S.A.	115(10)	2520-2525	2018	_,MHZ3,EIN2	EIL1, OsEIL1, MHZ6/OsEIL1, MHZ6,,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
45113	29459009	Akbar N., Gupta S., Tiwari A., Singh K.P., Kumar A.	Characterization of metabolic network of oxalic acid biosynthesis through RNA seq data analysis of developing spikes of finger millet (Eleusine coracana): Deciphering the role of key genes involved in oxalate formation in relation to grain calcium accumulation.	Gene	649	40-49	2018		
45114	29432165	Zhou X., Liao H., Chern M., Yin J., Chen Y., Wang J., Zhu X., Chen Z., Yuan C., Zhao W., Wang J., Li W., He M., Ma B., Wang J., Qin P., Chen W., Wang Y., Liu J., Qian Y., Wang W., Wu X., Li P., Zhu L., Li S., Ronald P.C., Chen X.	Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance.	Proc. Natl. Acad. Sci. U.S.A.	115(12)	3174-3179	2018	PAL1,PAL,PAL1,_,BSR-K1 ,_,_,_	OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPAL04, PAL04, PAL, OsPAL7, PAL7,OsBSR-K1, BSRK1 ,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,OsPAL05, PAL05, OsPAL3, PAL5, PAL3
45115	29475937	Wang W., Hu B., Yuan D., Liu Y., Che R., Hu Y., Ou S., Liu Y., Zhang Z., Wang H., Li H., Jiang Z., Zhang Z., Gao X., Qiu Y., Meng X., Liu Y., Bai Y., Liang Y., Wang Y., Zhang L., Li L., Sodmergen, Jing H., Li J., Chu C.	Expression of the Nitrate Transporter Gene <i>OsNRT1.1A/OsNPF6.3</i> Confers High Yield and Early Maturation in Rice.	Plant Cell	30(3)	638-651	2018	NRT2.3,NRT2.1,_,_,AMT1;1,GLN1;2,RFT1,_,GLT1,PSR1,HD3A,EF1,_	OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2,OsNIA2, NIA2, OsNR2, NR2,NRT1.1B, OsNRT1.1B, OsNPF6.5, NPF6.5,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsNR1, NR1, nia1, OsNIA1, NIA1,OsGLT1, OsNADH-GOGAT1, NADH-GOGAT1, OsNADH-GOGAT, GOGAT, NADH-GOGAT, OsGOGAT1, GOGAT1,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3, NPF6.3
45116	29335547	Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.	Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.	Nat. Genet.	50(2)	278-284	2018	HD3A,AN1,SNK2,_,SE1,SUB1A,GHD7,WX1,COLD1,SNK1,GLW7 ,_,BH4,SD1,SPK,PSTOL1,TT1	Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1,SK2,OsglHAT1, glHAT1, GW6a,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,,SK1,OsSPL13, SPL13,IBF1, OsFBX310, FBX310,Bh4, OsATL14, ATL14,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,Spk(t), Spk(t)*), Spk, OsTAC1, TAC1, qTAC9 ,Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO,OsPAB1, PAB1, OsTT1
45117	29355682	Yang Z., Zhang Y., Sun L., Zhang P., Liu L., Yu P., Xuan D., Xiang X., Wu W., Cao L., Cheng S.	Identification of CYP703A3-3 and analysis of regulatory role of CYP703A3 in rice anther cuticle and pollen exine development.	Gene	649	63-73	2018	ABCG15,DPW2,CYP703A3,TDR,ABCG26,CYP704B2,GAMYB	OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsDPW2,OsCYP703A3,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsABCG26,OsCYP704B2,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB
45118	29576089	Cui Y., Li M., Yin X., Song S., Xu G., Wang M., Li C., Peng C., Xia X.	OsDSSR1, a novel small peptide, enhances drought tolerance in transgenic rice.	Plant Sci.	270	85-96	2018	DSSR1	OsDSSR1
45119	29194535	Xia K., Zeng X., Jiao Z., Li M., Xu W., Nong Q., Mo H., Cheng T., Zhang M.	Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by MicroRNA5144-3p in Rice.	Plant Cell Physiol.	59(2)	331-342	2018	_,MIR5144	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,miR5144, osa-miR5144, osa-MIR5144, MIR5144-5p, MIR5144-3posa-miR5144-3p osa-miR5144-5p
45120	29485753	Chen J., Hu L., Sun L., Lin B., Huang K., Zhuo K., Liao J.	A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism.	Mol. Plant Pathol.			2018	_,KS4,GSL8,_,_,CHT1,WRKY70	OsEDS1, EDS1,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsGSL8, OsGSC, GSC, CRR1, OsCRR1,OsDUF26, CRRSP, OsCRRSP55, CRRSP55,OsBetvI, BetvI,Cht1*(Chi1), Ch16, Cht1, CHT-1, CH16, RC24, OsChia1a, OsChia1, Chi1, Cht1*, Chi-1, Cht-1, Cht1, RCC1, OsCht-1,OsWRKY70
45121	28992306	Sade N., Umnajkitikorn K., Rubio Wilhelmi MDM., Wright M., Wang S., Blumwald E.	Delaying chloroplast turnover increases water-deficit stress tolerance through the enhancement of nitrogen assimilation in rice.	J. Exp. Bot.	69(4)	867-878	2018	_,PSR1,ABC1,GS2,_,ASN1,CV,GDH2	OsGLN1;3, GLN1;3, OsGS1;3, GS1;3,PSR1, NiR, OsNiR, OsNIR1, NIR1, FD-NiR,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGS2, GLN2, RGS31,OsNR1, NR1, nia1, OsNIA1, NIA1,OsASN1, OsAS1, AS1,OsCV,OsGDH2
45122	29314052	Liu C., Qu X., Zhou Y., Song G., Abiri N., Xiao Y., Liang F., Jiang D., Hu Z., Yang D.	OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice.	Plant Cell Environ.	41(3)	630-645	2018		
45123	29479359	Ning X., Sun Y., Wang C., Zhang W., Sun M., Hu H., Liu J., Yang L.	A Rice CPYC-type Glutaredoxin <i>OsGRX20</i> in Protection against Bacterial Blight, Methyl Viologen and Salt Stresses.	Front Plant Sci	9	111	2018	GRX20,CATC,APX1,CATB,SODB	OsGRX20,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2
45124	29483672	Xu X., Walter W.J., Liu Q., Machens I., Nick P.	A rice class-XIV kinesin enters the nucleus in response to cold.	Sci Rep	8(1)	3588	2018	SRS3,_,BC12,_,_,DLK	OsSRS3, SAR1, OsSAR1,OsKCBP, KCBP,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12,OsKCH1, KCH1, OsKCH, KCH, O12,OsACK1, ACK1,OsDLK
45125	29453664	Lavania D., Dhingra A., Grover A.	Analysis of transactivation potential of rice (Oryza sativa L.) heat shock factors.	Planta	247(6)	1267-1276	2018	HSFB2A,HSFC2A,HSFA2B,HSFB4C,HSFB1,HSFB4D,HSFA3,HSFB2B,HSFA2E,HSFA1,HSFA5,HSFB4A,HSFA2A,HSFA9,HSFB2C,HSFA2C,HSFC2B,HSFA2D,HSFC1A,HSFA6,HSFA7,SPL7,HSFA4A,HSFB4B,HSFC1B	HSfB2a, OsHsfB2a, OsHsf-14, rHsf1, HSF1, HSF14,HSfC2a, OsHsfC2a, OsHsf-05, HSF05,HSfA2b, OsHsfA2b, OsHsf-18, rHsf5, HS1, HSF18, HSF5, OsHSF5,HSfB4c, OsHsfB4c, OsHsf-22, HSF22,HSfB1, OsHsfB1, OsHsf-23, HSF23, OsHsf23, TBF1 ,OsHsfB4d, HSfB4d, OsHsf-10, HSF10,HSfA3, OsHsfA3, OsHsf-07, HSF07,HSfB2b, OsHsfB2b, OsHsf-21, rHsf2, HSF2, HSF21,HSfA2e, OsHsfA2e, OsHsf-12, HSF12, OsHsfA2a, HsfA2a,OsHsfA1, HSFA1, HSF13, OsHsf-13, HSF3, rHsf3, OsHsfA1a,HSfA5, OsHsfA5, OsHsf-06, HSF06,HSfB4a, OsHsfB4a, OsHsf-20, HSF20,HSfA2a, OsHsfA2a, OsHsf-11, rHsf4, HSF11, HSF4, RHSP2, OsHsfA2a-1, OsHsfA2a-2, OsHsfA2a-3, OsHsfA2a-4, OsHsfA2a-5, OsHsfA2a-6, OsHsfA2e, HsfA2e ,HSfA9, OsHsfA9, OsHsf-09, rHsf8, HSF09, HSF8, OsHsfA8, HsfA8 ,HSfB2c, OsHsfB2c, OsHsf-24, HSF24, OsHSF24 ,HSfA2c, OsHsfA2c, OsHsf-25, rHsf6, OsHSF6, HSF25, HSF6, OsHsfA6a, HsfA6a ,HSfC2b, OsHsfC2b, OsHsf-16, HSF16,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b ,HSfC1a, OsHsfC1a, OsHsf-02, rHsf13, HSF02, HSF13,HSfA6, OsHsfA6, OsHsf-17, HSF17, HSFA6A, OsHsfA2f, HsfA2f, OsHsfA7b, HsfA7b,OsHsfA7, OsHsf-01, HSFA6B, HSF01, OsEnS-9, OsHsfA7a, HsfA7a ,spl7, HSFA4D, HSF10, HSF15, SP17, OsHsf-15, rHsf10, OsHsfA4d, HSfA4d, lrd13, HSF1,OsHsfA4a, OsHsf-04, HSFA4B, HSF04, HSF9, OsHsfA4b, OsHSF9,HSFB4b, OsHSFB4b, OsHsf-19, rHsf12, OsHSF12, HSF12, HSF19,OsHsfC1b, HsfC1b, HSF03, OsHsf-03, HSF11,  rHsf11
45126	29541083	Dou M., Zhang Y., Yang S., Feng X.	Identification of <i>ZHOUPI</i> Orthologs in Rice Involved in Endosperm Development and Cuticle Formation.	Front Plant Sci	9	223	2018	_,_	OsbHLH146, bHLH146, OsZOU-2, OsZOU2, ZOU-2, ZOU2,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1
45127	29487282	Liu Q., Han R., Wu K., Zhang J., Ye Y., Wang S., Chen J., Pan Y., Li Q., Xu X., Zhou J., Tao D., Wu Y., Fu X.	G-protein betagamma subunits determine grain size through interaction with MADS-domain transcription factors in rice.	Nat Commun	9(1)	852	2018	ARF9,RGB1,LK3,ARF14,RGG2,PIN1B,MADS55,_,LHS1,_,PAP2	OsARF9,OsWD40-80, RGbeta1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,OsARF14, OsETT4, ETT4,,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,OsMADS55,OsKANADI1, OsKANADI2, KANADI1, KANADI2,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,RGG1,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 
45128	29205590	Yang C., Ma Y., He Y., Tian Z., Li J.	OsOFP19 modulates plant architecture by integrating the cell division pattern and brassinosteroid signaling.	Plant J.	93(3)	489-501	2018	 LIC,_,OSH1,XTH2,CYP734A6,D2,CYP734A4,CYP734A2,DLT,LG1,DWARF4	OsC3H46, C3H46, OsLIC,OsOFP13, OsOFP19, OFP13, OFP19,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsXTH2, XTR1, OsXTR1,OsCYP734A6 ,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsCYP734A4,OsCYP734A2,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,SPL8, OsSPL8, OsLG1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4
45129	29411384	Liu X., Li D., Zhang D., Yin D., Zhao Y., Ji C., Zhao X., Li X., He Q., Chen R., Hu S., Zhu L.	A novel antisense long noncoding RNA, TWISTED LEAF, maintains LEAF blade flattening by regulating its associated sense R2R3-MYB gene in rice.	New Phytol.	218(2)	774-788	2018	TL,_,ZFP7 	,OsMyb11, Myb11, OsMYB60, MYB60,OsZFP7 
45130	29319227	He L., Zhang S., Qiu Z., Zhao J., Nie W., Lin H., Zhu Z., Zeng D., Qian Q., Zhu L.	FRUCTOKINASE-LIKE PROTEIN 1 interacts with TRXz to regulate chloroplast development in rice.	J Integr Plant Biol	60(2)	94-111	2018	HSA1,TRXZ,WLP2	OsFLN2, FLN2 , HSA1/OsFLN2,OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz,OsWLP2, OsFLN1, FLN1
45131	29501997	Mahmood T., Tahir T., Munir F., Shinwari Z.K.	Characterization of regulatory elements in OsRGLP2 gene promoter from different rice accessions through sequencing and in silico evaluation.	Comput Biol Chem	73	206-212	2018		
45132	29385597	Wei J., Zheng Y., Feng H., Qu H., Fan X., Yamaji N., Ma J.F., Xu G.	OsNRT2.4 encodes a dual-affinity nitrate transporter and functions in nitrate-regulated root growth and nitrate distribution in rice.	J. Exp. Bot.	69(5)	1095-1107	2018	NAR2.2,MADS61,NRT2.3,NRT2.1,NAR2.1,NRT2.2,NRT2.4,MADS27,MADS57,MADS23,MADS25	OsNAR2.2, OsNRT3.1B,OsMADS61, MADS-27b,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A,OsNRT2.2, OsNRT2.1,OsNRT2.4,OsMADS27, MADS-27a, OsSTA66, OsMADS27a,OsMADS57, MADS-57,OsMADS23, MADS-23,OsMADS25
45133	29426868	Das P.K., Biswas R., Anjum N., Das A.K., Maiti M.K.	Rice matrix metalloproteinase OsMMP1 plays pleiotropic roles in plant development and symplastic-apoplastic transport by modulating cellulose and callose depositions.	Sci Rep	8(1)	2783	2018	MMP1 	OsMMP1 
45134	29411094	Zou T., Liu M., Xiao Q., Wang T., Chen D., Luo T., Yuan G., Li Q., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Wang L., Li P., Li S.	OsPKS2 is required for rice male fertility by participating in pollen wall formation.	Plant Cell Rep.	37(5)	759-773	2018	CYP703A3,LAP6,_,NP1 ,PKS10,_,CYP704B2,_	OsCYP703A3,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6,OsACS9, ACS9, 4CL4, OsACOS12, ACOS12 ,OS-ACE, OsNP1 ,OsPKS10, OsPKS2, PKS2,OsSTRL2, STRL2,OsCYP704B2,OsMS2, MS2, OsDPW, DPW, DPW1
45135	29576066	Li J., Guo X., Zhang M., Wang X., Zhao Y., Yin Z., Zhang Z., Wang Y., Xiong H., Zhang H., Todorovska E., Li Z.	OsERF71 confers drought tolerance via modulating ABA signaling and proline biosynthesis.	Plant Sci.	270	131-139	2018		
45136	29479720	Ren L., Tang D., Zhao T., Zhang F., Liu C., Xue Z., Shi W., Du G., Shen Y., Li Y., Cheng Z.	OsSPL regulates meiotic fate acquisition in rice.	New Phytol.	218(2)	789-803	2018	GSL5,_,_,RAD21-4,MEL1,_,SPL,MEL2,_,PHS1,ASP1,_,PAIR2,_,_,UGP2	OsGSL5, OsSTA170,OsSPEAR2, SPEAR2,OsSPEAR3, SPEAR3,OsRad21-4, REC8, OsREC8, OsRAD21-4,mel1, OsMEL1, MEAL1, OsMEAL1, OsAGO5c ,OsSPEAR1, SPEAR1,OsSPL,OsMEL2,OsWD40-66, TPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2,OsPHS1,OsLIS-L1, OsWD40-155, ASP1, TPR2, OsREL2, REL2, OsTPL3, TPL3,OsTCP5, TCP5,Pair2, OsPAIR2, OsASY1,OsSPEAR4, SPEAR4,OsSPEAR6, SPEAR6,Ugp2, OsUgp2
45137	29479793	Yu J., Miao J., Zhang Z., Xiong H., Zhu X., Sun X., Pan Y., Liang Y., Zhang Q., Abdul Rehman RM., Li J., Zhang H., Li Z.	Alternative splicing of OsLG3b controls grain length and yield in japonica rice.	Plant Biotechnol. J.			2018	LHS1	OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3
45138	29446441	Inahashi H., Shelley I.J., Yamauchi T., Nishiuchi S., Takahashi-Nosaka M., Matsunami M., Ogawa A., Noda Y., Inukai Y.	OsPIN2, which encodes a member of the auxin efflux carrier proteins, is involved in root elongation growth and lateral root formation patterns via the regulation of auxin distribution in rice.	Physiol Plant			2018		
45139	29331375	Ma L., Wang Q., Yuan M., Zou T., Yin P., Wang S.	Xanthomonas TAL effectors hijack host basal transcription factor IIA alpha and gamma subunits for invasion.	Biochem. Biophys. Res. Commun.	496(2)	608-613	2018		
45140	29464319	Zhao Q., Zhou L., Liu J., Cao Z., Du X., Huang F., Pan G., Cheng F.	Involvement of CAT in the detoxification of HT-induced ROS burst in rice anther and its relation to pollen fertility.	Plant Cell Rep.	37(5)	741-757	2018	CATA,CATC,CATB	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2
45141	29356222	Beier M.P., Obara M., Taniai A., Sawa Y., Ishizawa J., Yoshida H., Tomita N., Yamanaka T., Ishizuka Y., Kudo S., Yoshinari A., Takeuchi S., Kojima S., Yamaya T., Hayakawa T.	Lack of ACTPK1, an STY kinase, enhances ammonium uptake and use, and promotes growth of rice seedlings under sufficient external ammonium.	Plant J.	93(6)	992-1006	2018	ILA1,ACTPK5,ACTPK2,ACTPK3,ACTPK6,AMT1;1,ACTPK1,AMT1;2	OsILA1, OsACTPK4, ACTPK4,OsACTPK5,OsACTPK2,OsACTPK3,OsACTPK6,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsACTPK1, ACTPK1-1, ACTPK1-2,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2
45142	29282651	Biswas S., Amin U.S.M., Sarker S., Rahman M.S., Amin R., Karim R., Tuteja N., Seraj Z.I.	Introgression, Generational Expression and Salinity Tolerance Conferred by the Pea DNA helicase?45 Transgene into Two Commercial Rice Genotypes, BR28 and BR47.	Mol. Biotechnol.	60(2)	111-123	2018		
45143	29440594	Jiang P., Wang S., Jiang H., Cheng B., Wu K., Ding Y.	The COMPASS-Like Complex Promotes Flowering and Panicle Branching in Rice.	Plant Physiol.	176(4)	2761-2771	2018	_,HD3A,GHD7,_,EF1,MADS51,RFT1,_	OsWD40-144, WD40-144, OsWDR5b, WDR5b,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsMADS51, OsMADS65, MADS65,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsSET33, SET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723 
45144	29345105	Zhang Y.J., Zhang Y., Zhang L.L., Huang H.Y., Yang B.J., Luan S., Xue H.W., Lin W.H.	OsGATA7 modulates brassinosteroids-mediated growth regulation and influences architecture and grain shape.	Plant Biotechnol. J.	16(7)	1261-1264	2018	GATA7	OsGATA7
45145	29467779	Yoon H., Yang J., Liang W., Zhang D., An G.	<i>OsVIL2</i> Regulates Spikelet Development by Controlling Regulatory Genes in <i>Oryza sativa</i>.	Front Plant Sci	9	102	2018		
45146	29576087	Manuka R., Saddhe A.A., Kumar K.	Expression of OsWNK9 in Arabidopsis conferred tolerance to salt and drought stress.	Plant Sci.	270	58-71	2018		
45147	29193704	Liu Y., Xu C., Zhu Y., Zhang L., Chen T., Zhou F., Chen H., Lin Y.	The calcium-dependent kinase OsCPK24 functions in cold stress responses in rice.	J Integr Plant Biol	60(2)	173-188	2018	GRX10,P5CS,CDPK24	OsGRX10,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsCDPK24, OsCPK24, OsCDPK14
45148	29440759	Jing L., Rui X., Chunchao W., Lan Q., Xiaoming Z., Wensheng W., Yingbin D., Lizhen Z., Yanyan W., Yunlian C., Lifang Z., Weihua Q., Qingwen Y.	A heading date QTL, qHD7.2, from wild rice (Oryza rufipogon) delays flowering and shortens panicle length under long-day conditions.	Sci Rep	8(1)	2928	2018	HD2	Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2
45149	29424430	Huang X., Peng X., Xie F., Mao W., Chen H., Sun M.X.	The stereotyped positioning of the generative cell associated with vacuole dynamics is not required for male gametogenesis in rice pollen.	New Phytol.	218(2)	463-469	2018	SUT3,WX1,MST8,SUT5,_,SUT1,_,GCD1	OsSUT3(t), OsSUT3, SUC3, OsSUT2,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsMST8, OSMST8,OsSUT5(t), OsSUT5Z, OsSUT5,OsGEX2, GEX2,OsSUT1, OsSUT2,OSINV4, OsINV4, INV4, OsCIN3,OsGCD1
45150	29479779	Lu K., Wu B., Wang J., Zhu W., Nie H., Qian J., Huang W., Fang Z.	Blocking amino acid transporter OsAAP3 improves grain yield by promoting outgrowth buds and increasing tiller number in rice.	Plant Biotechnol. J.			2018	CKX11,CKX5,CKX8,CKX9,_,CKX3,CKX6,CKX4,GN1A,CKX10	OsCKX11,OsCKX5, ckx5,OsCKX8,OsCKX9,OsAAP12A, AAP12A, OsAAP3, AAP3,OsCKX3, ckx3,OsCKX6,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsCKX10
45151	29463069	Lee H.Y., Yoon G.M.	Regulation of Ethylene Biosynthesis by Phytohormones in Etiolated Rice (<i>Oryza sativa</i> L.) Seedlings.	Mol. Cells	41(4)	311-319	2018	ACO3,ACO2,ACO5,ACS1,ACO4,ACS2	OsACO3,OsACO2,OsACO5, 2-ODD14, Os2-ODD14, 2ODD14, Os2ODD14,ACC1*, OsACS1, Os-ACS1, ACC1,OsACO4,OsACS2, Os-ACS2
45152	29453663	Xiong W., Wang P., Yan T., Cao B., Xu J., Liu D., Luo M.	The rice "fruit-weight 2.2-like" gene family member OsFWL4 is involved in the translocation of cadmium from roots to shoots.	Planta	247(5)	1247-1260	2018	_,_,_,_,_,_	OsFWL7, FWL7,OsFWL3, FWL3,OsFWL4, FWL4,OsFWL5, FWL5, OsPcr1, PCR1, OsPCR1,OsFWL8, FWL8,OsFWL6, FWL6
45153	29448154	Ciarkowska A., Ostrowski M., Jakubowska A.	A serine carboxypeptidase-like acyltransferase catalyzes synthesis of indole-3-acetic (IAA) ester conjugate in rice (Oryza sativa).	Plant Physiol. Biochem.	125	126-135	2018		
45154	29462612	Luo S., Luo T., Liu Y., Li Z., Fan S., Wu C.	N-terminus plus linker domain of Mg-chelatase D subunit is essential for Mg-chelatase activity in Oryza sativa.	Biochem. Biophys. Res. Commun.	497(2)	749-755	2018		
45155	29193778	Zhang X.B., Feng B.H., Wang H.M., Xu X., Shi Y.F., He Y., Chen Z., Sathe A.P., Shi L., Wu J.L.	A substitution mutation in OsPELOTA confers bacterial blight resistance by activating the salicylic acid pathway.	J Integr Plant Biol	60(2)	160-172	2018	SPLHM47	splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1
45156	29300985	Ma J., Chen J., Wang M., Ren Y., Wang S., Lei C., Cheng Z., Sodmergen	Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	J. Exp. Bot.	69(5)	1051-1064	2018	EXO70B1,SEC3A,_,LOX11,POX3006,PR10A,AOX1B,RLS2,_,_,TIFY11C,GSTF10,_,TIFY11D,PAL1	OsEXO70B1, OsExo70B1, OrysaB1_Exo70,OsSEC3A,OsEDS1, EDS1,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2,POX3006, prx114, PO-C1, POC-1, POC1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,AOX1b, OsAOX1b,OsEXO70A1, OsExo70A1, EXO70A1, OrysaA1_Exo70,OsSTA254, STA254 OsSEC3B, SEC3B ,OsSNAP32, SNAP32,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsGSTF10,PAD4, OsPAD4,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6
45157	29426861	Xue Z., Xu X., Zhou Y., Wang X., Zhang Y., Liu D., Zhao B., Duan L., Qi X.	Deficiency of a triterpene pathway results in humidity-sensitive genic male sterility in rice.	Nat Commun	9(1)	604	2018	_	OsOSC12/OsPTS1, OsOSC12, OsPTS1, OSC12, PTS1 
45158	29266248	Nuoendagula, Tsuji Y., Takata N., Sakamoto S., Nakagawa-Izumi A., Taniguchi T., Ralph J., Mitsuda N., Kajita S.	Change in lignin structure, but not in lignin content, in transgenic poplar overexpressing the rice master regulator of secondary cell wall biosynthesis.	Physiol Plant	163(2)	170-182	2018	_	ONAC007, ONAC7, OsSND1, SND1, OsSWN1, SWN1
45159	29484500	Wang J., Lu K., Nie H., Zeng Q., Wu B., Qian J., Fang Z.	Rice nitrate transporter OsNPF7.2 positively regulates tiller number and grain yield.	Rice (N Y)	11(1)	12	2018	D17,D10,SLB2,D3,D27,_,SLB1,D14,FC1	d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17,d10(d15,d16), d16, d15, dwf9, d10, OsCCD8b, OsCCD8, CCD8, OsD10,CYP711A1, OsCYP711A1,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d27(d t), dt, dwf23, d27, OsD27,OsNPF7.2, NPF7.2,OsSLB1,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1
45160	29382838	Kimura E., Abe T., Murata K., Kimura T., Otoki Y., Yoshida T., Miyazawa T., Nakagawa K.	Identification of OsGGR2, a second geranylgeranyl reductase involved in alpha-tocopherol synthesis in rice.	Sci Rep	8(1)	1870	2018	LYL2,LYL1	OsGGRII, GGRII, OsGGR2, GGR2,OsChl P, CHL P, ChlP, OsGGRI, GGRI, OsGGR, GGR, OsGGR1, GGR1, OsGGR1/LYL1/OsChl P
45161	29356349	Yin X., Zou B., Hong X., Gao M., Yang W., Zhong X., He Y., Kuai P., Lou Y., Huang J., Hua J., He Z.	Rice copine genes OsBON1 and OsBON3 function as suppressors of broad-spectrum disease resistance.	Plant Biotechnol. J.			2018	BON1 ,BON3,PR4,PR1A	OsBON1 ,OsBON3,OsPR4, OsPR4a, PR4a, OsPR-4,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 
45162	29237030	Wang X., Zou B., Shao Q., Cui Y., Lu S., Zhang Y., Huang Q., Huang J., Hua J.	Natural variation reveals that OsSAP16 controls low-temperature germination in rice.	J. Exp. Bot.	69(3)	413-421	2018	SAP16	OsSAP16
45163	29414311	Weerawanich K., Webster G., Ma J.K., Phoolcharoen W., Sirikantaramas S.	Gene expression analysis, subcellular localization, and in planta antimicrobial activity of rice (Oryza sativa L.) defensin 7 and 8.	Plant Physiol. Biochem.	124	160-166	2018		
45164	29385213	Shi X., Long Y., He F., Zhang C., Wang R., Zhang T., Wu W., Hao Z., Wang Y., Wang G.L., Ning Y.	The fungal pathogen Magnaporthe oryzae suppresses innate immunity by modulating a host potassium channel.	PLoS Pathog.	14(1)	e1006878	2018		
45165	29329517	Chung P.J., Jung H., Choi Y.D., Kim J.K.	Genome-wide analyses of direct target genes of four rice NAC-domain transcription factors involved in drought tolerance.	BMC Genomics	19(1)	40	2018		
45166	29330772	Lee H., Cha J., Choi C., Choi N., Ji H.S., Park S.R., Lee S., Hwang D.J.	Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance.	Rice (N Y)	11(1)	5	2018		
45167	29335785	Hwang S.G., Lee C.Y., Tseng C.S.	Heterologous expression of rice 9-cis-epoxycarotenoid dioxygenase 4 (OsNCED4) in Arabidopsis confers sugar oversensitivity and drought tolerance.	Botanical Studies	59(1)	2	2018		
45168	29321675	He S.L., Jiang J.Z., Chen B.H., Kuo C.H., Ho S.L.	Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.	Sci Rep	8(1)	403	2018		
45169	29309410	Li Z., Wang F., Zhao Q., Liu J., Cheng F.	Involvement of NADPH oxidase isoforms in the production of O2- manipulated by ABA in the senescing leaves of early-senescence-leaf (esl) mutant rice (Oryza sativa).	PLoS ONE	13(1)	e0190161	2018	_,RBOHG,_,RBOHC,RBOHA,RBOHB,RBOHE,RBOHF	OsFRO7, FRO7, OsFRO1 ,FRO1,rbohG, OsrbohG, Os rbohG, OsRbohG, OsNox7, Nox7, OsrbohB,ESL,rbohC, OsrbohC, Os rbohC, OsRbohC, OsNox5, Nox5, OsrbohD, OsRboh5,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE
45170	29247559	Lee K., Lee H.Y., Back K.	Rice histone deacetylase 10 and Arabidopsis histone deacetylase 14 genes encode N-acetylserotonin deacetylase, which catalyzes conversion of N-acetylserotonin into serotonin, a reverse reaction for melatonin biosynthesis in plants.	J. Pineal Res.	64(2)		2018	HDAC10	OsHDAC10
45171	29320982	Wei K., Chen H.	Global identification, structural analysis and expression characterization of cytochrome P450 monooxygenase superfamily in rice.	BMC Genomics	19(1)	35	2018		
45172	29313187	Sharma N., Dang T.M., Singh N., Ruzicic S., Mueller-Roeber B., Baumann U., Heuer S.	Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice.	Rice (N Y)	11(1)	2	2018	SUB1A	Sub1A, Sub1A-1, Sub1A-2, OsSUB1A
45173	29295941	Borah P., Khurana J.P.	The OsFBK1 E3 Ligase Subunit Affects Anther and Root Secondary Cell Wall Thickenings by Mediating Turnover of a Cinnamoyl-CoA Reductase.	Plant Physiol.	176(3)	2148-2165	2018	CCR20,CCR4,CCR5,_,_	OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsCCR4, OsCCR1, CCR1 ,OsCCR5, OsCCR2, CCR2,OsFbox033, OsFbox33, Fbox33, Os_F0114, OsFBK1, FBK1 ,
45174	29301377	He Y., Li L., Zhang Z., Wu J.L.	Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).	Int J Mol Sci	19(1)		2018	PSBS1,CAB2R,PSL270,PSL50,NCED3,PSL89,NCED1,RCCR1,ABA8OX3,PSL117,_,RBCL,NCED1,YGL10,ABA1,YGL98,FGL,PSL15,PSBA,ABA8OX2,ABA8OX1,_,SGR,_	OsPsbS1, PsbS1, psbS,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a ,OsPSL270,OsPSL50,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsPSL89,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsRCCR1, OsRCCR, RCCR,OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OsPSL117,Osh36, OsH36, H36, OsAMTR1, AMTR1,rbcL, rbcA, OsrbcL,OsNCED1, OsCCD4a, CCD4a,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsPSL15,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,sgr(t), sgr, OsSGR, OsSgr,OsI57, I57, OsKAT1, KAT1
45175	29190752	Zhang T., Huang L., Wang Y., Wang W., Zhao X., Zhang S., Zhang J., Hu F., Fu B., Li Z.	Differential transcriptome profiling of chilling stress response between shoots and rhizomes of Oryza longistaminata using RNA sequencing.	PLoS ONE	12(11)	e0188625	2017		
45176	29133823	Balyan S., Kumar M., Mutum R.D., Raghuvanshi U., Agarwal P., Mathur S., Raghuvanshi S.	Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22.	Sci Rep	7(1)	15446	2017		
45177	29122595	Yin D., Liu X., Shi Z., Li D., Zhu L.	An AT-hook protein DEPRESSED PALEA1 physically interacts with the TCP Family transcription factor RETARDED PALEA1 in rice.	Biochem. Biophys. Res. Commun.	495(1)	487-492	2018		
45178	29133370	Shangguan X., Zhang J., Liu B., Zhao Y., Wang H., Wang Z., Guo J., Rao W., Jing S., Guan W., Ma Y., Wu Y., Hu L., Chen R., Du B., Zhu L., Yu D., He G.	A mucin-like protein of Planthopper Is Required for Feeding and Induces Immunity Response in Plants.	Plant Physiol.	176(1)	552-565	2018		
45179	29163563	Rahman M.H., Zhang Y., Zhang K., Rahman M.S., Barman H.N., Riaz A., Chen Y., Wu W., Zhan X., Cao L., Cheng S.	Genetic Dissection of the Major Quantitative Trait Locus (qSE11), and Its Validation As the Major Influence on the Rate of stigma exsertion in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	8	1818	2017		
45180	29310269	Liang L., Wang X., Sun Y., Ma P., Li X., Piao H., Jiang Y., Song D.	Magnetic solid-phase extraction of triazine herbicides from rice using metal-organic framework MIL-101(Cr) functionalized magnetic particles.	Talanta	179	512-519	2018		
45181	29101885	Kumar Dubey A., Kumar N., Ranjan R., Gautam A., Pande V., Sanyal I., Mallick S.	Application of glycine reduces arsenic accumulation and toxicity in Oryza sativa L. by reducing the expression of silicon transporter genes.	Ecotoxicol. Environ. Saf.	148	410-417	2018		
45182	29115926	Tan M., Cheng D., Yang Y., Zhang G., Qin M., Chen J., Chen Y., Jiang M.	Co-expression network analysis of the transcriptomes of rice roots exposed to various cadmium stresses reveals universal cadmium-responsive genes.	BMC Plant Biol.	17(1)	194	2017		
45183	29151804	Dixit S., Singh A., Sandhu N., Bhandari A., Vikram P., Kumar A.	Combining drought and submergence tolerance in rice: marker-assisted breeding and QTL combination effects.	Mol. Breed.	37(12)	143	2017		
45184	29116179	Zhang X., Zuo B., Song Z., Wang W., He Y., Liu Y., Cai D.	Breeding and study of two new photoperiod- and thermo-sensitive genic male sterile lines of polyploid rice (Oryza sativa L.).	Sci Rep	7(1)	14744	2017		
45185	29156580	Jo Y.M., Cho K., Lee H.J., Lim S.H., Kim J.S., Kim Y.M., Lee J.Y.	Cellular Localization of Wheat High Molecular Weight Glutenin Subunits in Transgenic Rice Grain.	Int J Mol Sci	18(11)		2017		
45186	29158416	Lu L., Chen J., Robb S.M.C., Okumoto Y., Stajich J.E., Wessler S.R.	Tracking the genome-wide outcomes of a transposable element burst over decades of amplification.	Proc. Natl. Acad. Sci. U.S.A.	114(49)	E10550-E10559	2017		
45187	29161274	Rais A., Jabeen Z., Shair F., Hafeez F.Y., Hassan M.N.	Bacillus spp., a bio-control agent enhances the activity of antioxidant defense enzymes in rice against Pyricularia oryzae.	PLoS ONE	12(11)	e0187412	2017		
45188	28941326	Tang H., Chen G., Chen F., Han L., Peng Y.	Development and relative fitness of Cry1C resistance in Chilo suppressalis.	Pest Manag. Sci.	74(3)	590-597	2018		
45189	29098463	Rahman M.A., Bimpong I.K., Bizimana J.B., Pascual E.D., Arceta M., Swamy B.P.M., Diaw F., Rahman M.S., Singh R.K.	Mapping QTLs using a novel source of salinity tolerance from Hasawi and their interaction with environments in rice.	Rice (N Y)	10(1)	47	2017		
45190	29225594	Liu Z., Li X., Sun F., Zhou T., Zhou Y.	Overexpression of <i>OsCIPK30</i> Enhances Plant Tolerance to <i>Rice stripe virus</i>.	Front Microbiol	8	2322	2017		
45191	29167676	Yang Z., Zhang Z., Zhang T., Fahad S., Cui K., Nie L., Peng S., Huang J.	The Effect of Season-Long Temperature Increases on Rice Cultivars Grown in the Central and Southern Regions of China.	Front Plant Sci	8	1908	2017		
45192	28888162	Liu X., Li X., Dai C., Zhou J., Yan T., Zhang J.	Improved short-term drought response of transgenic rice over-expressing maize C4 phosphoenolpyruvate carboxylase via calcium signal cascade.	J. Plant Physiol.	218	206-221	2017		
45193	29094211	Fan Y., Zhang Q.	Genetic and molecular characterization of photoperiod and thermo-sensitive male sterility in rice.	Plant Reproduction	31(1)	3-14	2018		
45194	29106621	Shi W., Yin X., Struik P.C., Solis C., Xie F., Schmidt R.C., Huang M., Zou Y., Ye C., Jagadish S.V.K.	High day- and night-time temperatures affect grain growth dynamics in contrasting rice genotypes.	J. Exp. Bot.	68(18)	5233-5245	2017		
45195	29209408	Xiong X., Duan L., Liu L., Tu H., Yang P., Wu D., Chen G., Xiong L., Yang W., Liu Q.	Panicle-SEG: a robust image segmentation method for rice panicles in the field based on deep learning and superpixel optimization.	Plant Methods	13	104	2017		
45196	29202329	Zhao Q., Zhou L., Liu J., Du X., Asad M.A., Huang F., Pan G., Cheng F.	Relationship of ROS accumulation and superoxide dismutase isozymes in developing anther with floret fertility of rice under heat stress.	Plant Physiol. Biochem.	122	90-101	2018		
45197	29158982	Yao S., Deng L., Zeng K.	Genome-wide <i>in silico</i> identification of membrane-bound transcription factors in plant species.	PeerJ	5	e4051	2017		
45198	29172939	Sakamoto T., Kitano H., Fujioka S.	Rice ERECT LEAF 1 acts in an alternative brassinosteroid signaling pathway independent of the receptor kinase OsBRI1.	Plant Signal Behav	12(12)	e1396404	2017		
45199	29162059	Zhao Y., Wen H., Teotia S., Du Y., Zhang J., Li J., Sun H., Tang G., Peng T., Zhao Q.	Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.).	BMC Plant Biol.	17(1)	215	2017		
45200	29194644	Chiu C.H., Choi J., Paszkowski U.	Independent signalling cues underpin arbuscular mycorrhizal symbiosis and large lateral root induction in rice.	New Phytol.	217(2)	552-557	2018		
45201	29250098	Chatterjee A., Huma B., Shaw R., Kundu S.	Reconstruction of <i>Oryza sativa indica</i> Genome Scale Metabolic Model and Its Responses to Varying RuBisCO Activity, Light Intensity, and Enzymatic Cost Conditions.	Front Plant Sci	8	2060	2017		
45202	29156306	Cao Q., Rediske R.R., Yao L., Xie L.	Effect of microcystins on root growth, oxidative response, and exudation of rice (Oryza sativa).	Ecotoxicol. Environ. Saf.	149	143-149	2018		
45203	29113428	Dangol S., Singh R., Chen Y., Jwa N.S.	Visualization of Multicolored in vivo Organelle Markers for Co-Localization Studies in Oryza sativa.	Mol. Cells	40(11)	828-836	2017		
45204	29133783	Huo X., Wu S., Zhu Z., Liu F., Fu Y., Cai H., Sun X., Gu P., Xie D., Tan L., Sun C.	NOG1 increases grain production in rice.	Nat Commun	8(1)	1497	2017	_,AOC,OG1,NOG1,AOS2,_	Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsAOC, AOC1, OsAOC1, HB, CPM2,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsDAD1;3, DAD1;3
45205	29163626	He H., Ji Y., Zhu S., Li B., Zhao R., Jiang Z., Bie T.	Genetic, Physical and Comparative Mapping of the Powdery Mildew Resistance Gene <i>Pm21</i> Originating from <i>Dasypyrum villosum</i>.	Front Plant Sci	8	1914	2017		
45206	29116162	Jiang S., Lu Y., Dai Y., Qian L., Muhammad A.B., Li T., Wan G., Parajulee M.N., Chen F.	Impacts of elevated CO2 on exogenous Bacillus thuringiensis toxins and transgene expression in transgenic rice under different levels of nitrogen.	Sci Rep	7(1)	14716	2017		
45207	29249980	Peng L., Zhao Y., Wang H., Song C., Shangguan X., Ma Y., Zhu L., He G.	Functional Study of Cytochrome P450 Enzymes from the Brown Planthopper (<i>Nilaparvata lugens</i> St?l) to Analyze Its Adaptation to BPH-Resistant Rice.	Front Physiol	8	972	2017		
45208	29143605	Teplyakova S., Lebedeva M., Ivanova N., Horeva V., Voytsutskaya N., Kovaleva O., Potokina E.	Impact of the 7-bp deletion in HvGA20ox2 gene on agronomic important traits in barley (Hordeum vulgare L.).	BMC Plant Biol.	17(Suppl 1)	181	2017		
45209	29144205	Bia?as A., Zess E.K., De la Concepcion JC., Franceschetti M., Pennington H.G., Yoshida K., Upson J.L., Chanclud E., Wu C.H., Langner T., Maqbool A., Varden F.A., Derevnina L., Belhaj K., Fujisaki K., Saitoh H., Terauchi R., Banfield M.J., Kamoun S.	Lessons in Effector and NLR Biology of Plant-Microbe Systems.	Mol. Plant Microbe Interact.	31(1)	34-45	2018		
45210	29098311	Saito M., Tanaka T., Sato K., Vrinten P., Nakamura T.	A single nucleotide polymorphism in the "Fra" gene results in fractured starch granules in barley.	Theor. Appl. Genet.	131(2)	353-364	2018		
45211	28582707	Gao H., Wen L., Wu Y., Fu Z., Wu G.	An ultrasensitive label-free electrochemiluminescent immunosensor for measuring Cry1Ab level and genetically modified crops content.	Biosens Bioelectron	97	122-127	2017		
45212	29105533	Desaki Y., Miyata K., Suzuki M., Shibuya N., Kaku H.	Plant immunity and symbiosis signaling mediated by LysM receptors.	Innate Immun	24(2)	92-100	2018		
45213	29398938	Fan M., Wang X., Sun J., Zhang Q., Xu Z., Xu Q.	Effect of <i>indica</i> pedigree on eating and cooking quality in rice backcross inbred lines of <i>indica</i> and <i>japonica</i> crosses.	Breed. Sci.	67(5)	450-458	2017		
45214	29101356	Shen R., Wang L., Liu X., Wu J., Jin W., Zhao X., Xie X., Zhu Q., Tang H., Li Q., Chen L., Liu Y.G.	Genomic structural variation-mediated allelic suppression causes hybrid male sterility in rice.	Nat Commun	8(1)	1310	2017		
45215	29170677	Hu Q., He Y., Wang L., Liu S., Meng X., Liu G., Jing Y., Chen M., Song X., Jiang L., Yu H., Wang B., Li J.	DWARF14, A Receptor Covalently Linked with the Active Form of Strigolactones, Undergoes Strigolactone-Dependent Degradation in Rice.	Front Plant Sci	8	1935	2017		
45216	29109405	Chen H., Luo J., Zheng P., Zhang X., Zhang C., Li X., Wang M., Huang Y., Liu X., Jan M., Liu Y., Hu P., Tu J.	Application of Cre-lox gene switch to limit the Cry expression in rice green tissues.	Sci Rep	7(1)	14505	2017		
45217	29190520	van der Putten PEL., Yin X., Struik P.C.	Calibration matters: On the procedure of using the chlorophyll fluorescence method to estimate mesophyll conductance.	J. Plant Physiol.	220	167-172	2018		
45218	29170911	Piao Z., Wang W., Wei Y., Zonta F., Wan C., Bai J., Wu S., Wang X., Fang J.	Characterization of an Acetohydroxy acid synthase mutant conferring tolerance to imidazolinone herbicides in rice (Oryza sativa).	Planta	247(3)	693-703	2018		
45219	29234339	Xiong J., Tao T., Luo Z., Yan S., Liu Y., Yu X., Liu G., Xia H., Luo L.	RNA Editing Responses to oxidative stress between a Wild Abortive Type Male-Sterile Line and Its Maintainer Line.	Front Plant Sci	8	2023	2017		
45220	29398949	Matsumoto K., Ota Y., Seta S., Nakayama Y., Ohno T., Mizobuchi R., Sato H.	Identification of QTLs for rice brown spot resistance in backcross inbred lines derived from a cross between Koshihikari and CH45.	Breed. Sci.	67(5)	540-543	2017		
45221	29176862	Koschmieder J., Fehling-Kaschek M., Schaub P., Ghisla S., Brausemann A., Timmer J., Beyer P.	Plant-type phytoene desaturase: Functional evaluation of structural implications.	PLoS ONE	12(11)	e0187628	2017		
45222	29209351	Park J.H., Tran L.H., Jung S.	Perturbations in the Photosynthetic Pigment Status Result in Photooxidation-Induced Crosstalk between Carotenoid and Porphyrin Biosynthetic Pathways.	Front Plant Sci	8	1992	2017		
45223	29175437	Zhang D., Xu Z., Cao S., Chen K., Li S., Liu X., Gao C., Zhang B., Zhou Y.	An Uncanonical CCCH-Tandem Zinc-Finger Protein Represses Secondary Wall Synthesis and Controls Mechanical Strength in Rice.	Mol Plant	11(1)	163-174	2018		
45224	29016933	Chen Y., Yang Q., Sang S., Wei Z., Wang P.	Rice Inositol Polyphosphate Kinase (OsIPK2) Directly Interacts with OsIAA11 to Regulate lateral root Formation.	Plant Cell Physiol.	58(11)	1891-1900	2017		
45225	29551940	Yang J., Liu L., Wang Y., Wang C., Yan J., Liu Y., Wang C., Li C.	Overexpression of <i>BAS1</i> in rice blast fungus can promote blast fungus growth, sporulation and virulence in <i>planta</i>.	Saudi J Biol Sci	24(8)	1884-1893	2017		
45226	29692099	Cao N., Chen X.R., He H.H., Zhu C.L., Cai S., Xu T., Xie H.W., Liu F.P.	[Effects of spraying P and K fertilizers during panicle primordium differentiation stage on cold resistance, yield and physiological characteristics of early rice].	Ying Yong Sheng Tai Xue Bao	28(11)	3562-3570	2017		
45227	29133372	Wang J., Hu P., Lin L., Chen Z., Liu Q., Wei C.	Gradually Decreasing Starch Branching Enzyme Expression Is Responsible for the Formation of Heterogeneous Starch Granules.	Plant Physiol.	176(1)	582-595	2018		
45228	29398948	Qi Y., Wang L., Gui J., Zhang L., Liu Q., Wang J.	Development and validation of a functional co-dominant SNP marker for the photoperiod thermo-sensitive genic male sterility <i>pms3</i> (<i>p/tms12-1</i>) gene in rice.	Breed. Sci.	67(5)	535-539	2017		
45229	29145412	Xia D., Zhou H., Qiu L., Jiang H., Zhang Q., Gao G., He Y.	Mapping and verification of grain shape QTLs based on an advanced backcross population in rice.	PLoS ONE	12(11)	e0187553	2017		
45230	29362087	Liu L., Xie T., Peng P., Qiu H., Zhao J., Fang J., Patil S.B., Wang Y., Fang S., Chu J., Yuan S., Zhang W., Li X.	Mutations in the mit3 gene encoding a caroteniod isomerase lead to increased tiller number in rice.	Plant Sci.	267	1-10	2018		
45231	29157132	Ye Z., Yamazaki K., Minoda H., Miyamoto K., Miyazaki S., Kawaide H., Yajima A., Nojiri H., Yamane H., Okada K.	In planta functions of cytochrome P450 monooxygenase genes in the phytocassane biosynthetic gene cluster on rice chromosome 2.	Biosci. Biotechnol. Biochem.	82(6)	1021-1030	2018		
45232	29184886	Moin M., Bakshi A., Madhav M.S., Kirti P.B.	Expression Profiling of Ribosomal Protein Gene Family in Dehydration Stress Responses and Characterization of Transgenic Rice Plants Overexpressing <i>RPL23A</i> for Water-Use Efficiency and Tolerance to Drought and Salt Stresses.	Front Chem	5	97	2017	_,_,UBQ5,BZIP23,RPS15A,RPS23A,_,NAC6,RPL5,_,RPS7A,RPL23A,RPL36.2,RPS28 ,RPL21.2,RPL13A,_,RPL29,RPS10A,_,RPL34,_,RPS4,RPL31,RPL30E,RPL4,_,_,RPL26,_,RPL17,_,RPL13B,RPS5,_,_,_,ERF42,_,RPL35A.3,RPL44,_,_,_,RPS26,RPS18A,_,RPS9-2,RPL26.1,RPL2,RPL18A,RPS17,RPL19,RPS25,RPL28,_,RPS24,RPS30,RPL15,_,_,RPL38,RPS29,RPL37,_,_,RPL51,_,RPS27	OsRPL5, RPL5,RPS10, OsRPS10,RPS27a, OsUBQ5, OsRPS27a,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,RPS15a, OsRPS15a   ,RPS23a, OsRPS23a,RPL12, RPL10, OsRPL12, OsRPL10,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p,RPS25, OsRPS25,RPS7a, OsRPS7a,OsRPL23A,OsRPL36.2,OsRPS28,OsRPL21.2,OsRPL13a, RPL13a,OsRPL27.3, RPL27.3,OsRPL29,RPS10a, OsRPS10a,RPS21, OsRPS21,OsRPL34,RPS4,rps4, RPS4a ,OsRPL31,OsRPL30e, RPL30e,OsRPL4,RPS5,OsRPL7/L12, RPL7/L12, RPL7, RPL12, OsRPL7, OsRPL12,RPL24b, OsRPL26, OsRPL24b,rig, RPS15, OsRPS15,RPL22, OsRPL17, OsRPL22,RPS7, OsRPS7,RPL13b, OsRPL13b,RPS5A,RPS6, OsRPS6,OsRPL14, RPL14,BIP123, RPL24a, OsRPL24a,OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A,RPS13, OsRPS13,OsRPL35a.3, RPL35a.3,OsRPL44,RPS6, RPS6a, RPS6A, OsRPS6, OsRPS6a,RPS4, RPS19, OsRPS4, OsRPS19 ,RPS23, OsRPS23,OsRPS26,RPS18a, OsRPS18a,rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32,OsRPS9-2,OsRPL26.1,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,rpl18a, RPL18a, OsRPL18a,OsRPS17,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,RPS25, RPS25a, OsRPS25, OsRPS25a ,OsRPL28,RPS9, OsRPS9,OsRPS24,OsRPS30,OsRPL15,RPS13, RPS13a, OsRPS13, OsRPS13a,RPS18, OsRPS18,OsRPL38,OsRPS29,OsRPL37,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,RPS3a,OsRPL51,OsRPL6, RPL6,OsRPS27
45233	29293814	Wang X., Dong Q., Li X., Yuliang A., Yu Y., Li N., Liu B., Gong L.	Cytonuclear Variation of Rubisco in Synthesized Rice Hybrids and Allotetraploids.	Plant Genome	10(3)		2017		
45234	28960566	Li W.Q., Zhang M.J., Gan P.F., Qiao L., Yang S.Q., Miao H., Wang G.F., Zhang M.M., Liu W.T., Li H.F., Shi C.H., Chen K.M.	CLD1/SRL1 modulates leaf rolling by affecting cell wall formation, epidermis integrity and water homeostasis in rice.	Plant J.	92(5)	904-923	2017	SRL1	OsSRL1, CLD1/SRL1, CLD1, OsCLD1
45235	29162881	Feng X., Peng C., Chen Y., Liu X., Feng X., He Y.	Discrimination of CRISPR/Cas9-induced mutants of rice seeds using near-infrared hyperspectral imaging.	Sci Rep	7(1)	15934	2017		
45236	29162918	Hirotsu N., Ujiie K., Perera I., Iri A., Kashiwagi T., Ishimaru K.	Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.	Sci Rep	7(1)	15958	2017		
45237	29190793	Jiang C., Shen Q.J., Wang B., He B., Xiao S., Chen L., Yu T., Ke X., Zhong Q., Fu J., Chen Y., Wang L., Yin F., Zhang D., Ghidan W., Huang X., Cheng Z.	Transcriptome analysis of WRKY gene family in Oryza officinalis Wall ex Watt and WRKY genes involved in responses to Xanthomonas oryzae pv. oryzae stress.	PLoS ONE	12(11)	e0188742	2017		
45238	29105251	Li H., Li J., Xu R., Qin R., Song F., Li L., Wei P., Yang J.	Isolation of five rice nonendosperm tissue-expressed promoters and evaluation of their activities in transgenic rice.	Plant Biotechnol. J.	16(6)	1138-1147	2018		
45239	29163608	Chen G., Liu C., Gao Z., Zhang Y., Jiang H., Zhu L., Ren D., Yu L., Xu G., Qian Q.	<i>OsHAK1</i>, a High-Affinity Potassium Transporter, Positively Regulates Responses to Drought Stress in Rice.	Front Plant Sci	8	1885	2017		
45240	29190814	Bindusree G., Natarajan P., Kalva S., Madasamy P.	Whole genome sequencing of Oryza sativa L. cv. Seeragasamba identifies a new fragrance allele in rice.	PLoS ONE	12(11)	e0188920	2017		
45241	29164348	Singh C., K V S., S P JK., K BN., Pal G., K UB., K V R., G S.	Delineation of Inheritance Pattern of aleurone layer Colour Through Chemical Tests in Rice.	Rice (N Y)	10(1)	48	2017		
45242	29177846	Li X., Wang Y., Duan E., Qi Q., Zhou K., Lin Q., Wang D., Wang Y., Long W., Zhao Z., Cheng Z., Lei C., Zhang X., Guo X., Wang J., Wu C., Jiang L., Wang C., Wan J.	OPEN GLUME1: a key enzyme reducing the precursor of JA, participates in carbohydrate transport of lodicules during anthesis in rice.	Plant Cell Rep.	37(2)	329-346	2018	_,11N3,SWEET4,XA13,SWEET15,OG1,SWEET5,_	OsI57, I57, OsKAT1, KAT1,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,OsSWEET4,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsSWEET15,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsSWEET5,OsHPPD, HPPD, Osl30, l30
45243	29268705	Wang Y., Pang C., Li X., Hu Z., Lv Z., Zheng B., Chen P.	Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.	BMC Plant Biol.	17(1)	261	2017		
45244	29297308	Vavilova V., Konopatskaia I., Kuznetsova A.E., Blinov A., Goncharov N.P.	DEP1 gene in wheat species with normal, compactoid and compact spikes.	BMC Genet.	18(Suppl 1)	106	2017		
45245	29247278	Tang D., Wei F., Kashif M.H., Khan A., Li Z., Shi Q., Jia R., Xie H., Zhang L., Li B., Chen P., Zhou R.	Analysis of chloroplast differences in leaves of rice isonuclear alloplasmic lines.	Protoplasma	255(3)	863-871	2018		
45246	29197985	Wu J., Chen L., Shahid M.Q., Chen M., Dong Q., Li J., Xu X., Liu X.	Pervasive interactions of Sa and Sb loci cause high pollen sterility and abrupt changes in gene expression during meiosis that could be overcome by double neutral genes in autotetraploid rice.	Rice (N Y)	10(1)	49	2017		
45247	29259968	Kulkarni M., Soolanayakanahally R., Ogawa S., Uga Y., Selvaraj M.G., Kagale S.	Drought Response in Wheat: Key Genes and Regulatory Mechanisms Controlling Root System Architecture and Transpiration Efficiency.	Front Chem	5	106	2017		
45248	29244864	Nemchinov L.G., Shao J., Lee M.N., Postnikova O.A., Samac D.A.	Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae.	PLoS ONE	12(12)	e0189781	2017		
45249	29279818	Ghosh P., Roychoudhury A.	Differential levels of metabolites and enzymes related to aroma formation in aromatic indica rice varieties: comparison with non-aromatic varieties.	3 Biotech	8(1)	25	2018		
45250	29223068	Alam N.B., Ghosh A.	Comprehensive analysis and transcript profiling of Arabidopsis thaliana and Oryza sativa Catalase gene family suggests their specific roles in development and stress responses.	Plant Physiol. Biochem.	123	54-64	2018		
45251	29213298	Chiong K.T., Damaj M.B., Padilla C.S., Avila C.A., Pant S.R., Mandadi K.K., Ramos N.R., Carvalho D.V., Mirkov T.E.	Reproducible genomic DNA preparation from diverse crop species for molecular genetic applications.	Plant Methods	13	106	2017		
45252	29312925	Mittal S., Mallikarjuna M.G., Rao A.R., Jain P.A., Dash P.K., Thirunavukkarasu N.	Comparative Analysis of CDPK Family in Maize, <i>Arabidopsis</i>, Rice, and Sorghum Revealed Potential Targets for drought tolerance Improvement.	Front Chem	5	115	2017		
45253	29254884	Baliyan N., Malik R., Rani R., Mehta K., Vashisth U., Dhillon S., Boora K.S.	Integrating marker-assisted background analysis with foreground selection for pyramiding bacterial blight resistance genes into Basmati rice.	C. R. Biol.	341(1)	1-8	2018		
45254	29240945	Ting M.K.Y., She Y.M., Plaxton W.C.	Transcript profiling indicates a widespread role for bacterial-type phosphoenolpyruvate carboxylase in malate-accumulating sink tissues.	J. Exp. Bot.	68(21-22)	5857-5869	2017	_	Osppc-b, OsSTA1, ppc-b, STA1, BTPC, OsBTPC
45255	29291150	Kumari M., Devanna B.N., Singh P.K., Rajashekara H., Sharma V., Sharma T.R.	Stacking of blast resistance orthologue genes in susceptible indica rice line improves resistance against <i>Magnaporthe oryzae</i>.	3 Biotech	8(1)	37	2018		
45256	29282604	Zou T., Xiao Q., Li W., Luo T., Yuan G., He Z., Liu M., Li Q., Xu P., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Wang L., Li P., Li S.	OsLAP6/OsPKS1, an orthologue of Arabidopsis PKSA/LAP6, is critical for proper pollen exine formation.	Rice (N Y)	10(1)	53	2017	LAP6	OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6
45257	29218376	Tang X., Gong R., Sun W., Zhang C., Yu S.	Genetic dissection and validation of candidate genes for flag leaf size in rice (Oryza sativa L.).	Theor. Appl. Genet.	131(4)	801-815	2018		
45258	29214636	Lin W.Y., Lin Y.Y., Chiang S.F., Syu C., Hsieh L.C., Chiou T.J.	Evolution of microRNA827 targeting in the plant kingdom.	New Phytol.	217(4)	1712-1725	2018		
45259	29136323	Ikawa H., Chen C.P., Sikma M., Yoshimoto M., Sakai H., Tokida T., Usui Y., Nakamura H., Ono K., Maruyama A., Watanabe T., Kuwagata T., Hasegawa T.	Increasing canopy photosynthesis in rice can be achieved without a large increase in water use-A model based on free-air CO2 enrichment.	Glob Chang Biol	24(3)	1321-1341	2018		
45260	29243204	Anand G., Yadav S., Tanveer A., Nasim J., Singh N.K., Dubey A.K., Yadav D.	Genome-Wide Assessment of Polygalacturonases-Like (PGL) Genes of Medicago truncatula, Sorghum bicolor, Vitis vinifera and Oryza sativa Using Comparative Genomics Approach.	Interdiscip Sci			2017	_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsPGL7, PGL7,OsPGL21, PGL21,OsPGL25, PGL25,OsPGL8, PGL8,OsPGL24, PGL24,OsPGL35, PGL35,OsPGL12, PGL12,OsPGL9, PGL9,OsPGL11, PGL11,OsPGL23, PGL23,OsPGL16, PGL16,OsPGL3, PGL3,OsPGL31, PGL31,OsPGL30, PGL30,OsPGL33, PGL33,OsPGL34, PGL34,OsPGL32, PGL32,OsPGL17, PGL17,OsPGL5, PGL5,OsPGL20, PGL20,OsPGL29, PGL29,OsPGL13, PGL13,OsPGL27, PGL27,OsPGL18, PGL18,OsPGL1, PGL1,OsPGL2, PGL2,OsPGL6, PGL6,OsPGL28, PGL28,OsPGL10, PGL10,OsPGL4, PGL4,OsPGL22, PGL22,OsPGL15, PGL15,OsPGL19, PGL19,OsPGL14, PGL14,OsPGL26, PGL26
45261	29036354	Singh U., Khemka N., Rajkumar M.S., Garg R., Jain M.	PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea.	Nucleic Acids Res.	45(22)	e183	2017		
45262	29362095	Qiu Z., Kang S., He L., Zhao J., Zhang S., Hu J., Zeng D., Zhang G., Dong G., Gao Z., Ren D., Chen G., Guo L., Qian Q., Zhu L.	The newly identified heat-stress sensitive albino 1 gene affects chloroplast development in rice.	Plant Sci.	267	168-179	2018		
45263	29312409	Sun H., Feng F., Liu J., Zhao Q.	The Interaction between Auxin and Nitric Oxide Regulates Root Growth in Response to Iron Deficiency in Rice.	Front Plant Sci	8	2169	2017		
45264	29272715	Tang Z., Fan F., Wang X., Shi X., Deng S., Wang D.	Mercury in rice (Oryza sativa L.) and rice-paddy soils under long-term fertilizer and organic amendment.	Ecotoxicol. Environ. Saf.	150	116-122	2018		
45265	29253619	Liu C., Zheng S., Gui J., Fu C., Yu H., Song D., Shen J., Qin P., Liu X., Han B., Yang Y., Li L.	Shortened Basal Internodes Encodes a Gibberellin 2-Oxidase and Contributes to Lodging Resistance in Rice.	Mol Plant	11(2)	288-299	2018	GA2OX11,SBI	OsGA2ox11, 2-ODD31, Os2-ODD31, 2ODD31, Os2ODD31,GA2OX4, OsGA2ox4, ga2ox 4, OsGA2ox-4
45266	29281725	Wu B., Hu W., Ayaad M., Liu H., Xing Y.	Intragenic recombination between two non-functional semi-dwarf 1 alleles produced a functional SD1 allele in a tall recombinant inbred line in rice.	PLoS ONE	12(12)	e0190116	2017		
45267	29222476	Zhou W., Lv T., Yang Z., Wang T., Fu Y., Chen Y., Hu B., Ren W.	Morphophysiological mechanism of rice yield increase in response to optimized nitrogen management.	Sci Rep	7(1)	17226	2017		
45268	29242378	Wada S., Yamamoto H., Suzuki Y., Yamori W., Shikanai T., Makino A.	Flavodiiron Protein Substitutes for Cyclic Electron Flow without Competing CO2 Assimilation in Rice.	Plant Physiol.	176(2)	1509-1518	2018		
45269	29069481	Liu Y., Wang K., Li D., Yan J., Zhang W.	Enhanced cold tolerance and Tillering in Switchgrass (Panicum virgatum L.) by Heterologous Expression of Osa-miR393a.	Plant Cell Physiol.	58(12)	2226-2240	2017		
45270	29281971	Kajal M., Singh K.	Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum.	BMC Plant Biol.	17(1)	265	2017		
45271	29222496	Wang X., Pang Y., Zhang J., Wu Z., Chen K., Ali J., Ye G., Xu J., Li Z.	Genome-wide and gene-based association mapping for rice eating and cooking characteristics and protein content.	Sci Rep	7(1)	17203	2017		
45272	29202710	Parvathaneni R.K., DeLeo V.L., Spiekerman J.J., Chakraborty D., Devos K.M.	Parallel loss of introns in the ABCB1 gene in angiosperms.	BMC Evol. Biol.	17(1)	238	2017		
45273	29269937	Hosojima M., Shimada H., Obi Y., Kuwahara S., Kaseda R., Kabasawa H., Kondo H., Fujii M., Watanabe R., Suzuki Y., Kadowaki M., Miyazaki S., Saito A.	A Randomized, Double-Blind, Crossover Pilot Trial of rice endosperm protein Supplementation in Maintenance Hemodialysis Patients.	Sci Rep	7(1)	18003	2017		
45274	29240818	Zhang X., Sun C., Zhang Z., Dai Z., Chen Y., Yuan X., Yuan Z., Tang W., Li L., Hu Z.	Genetic dissection of main and epistatic effects of QTL based on augmented triple test cross design.	PLoS ONE	12(12)	e0189054	2017		
45275	29186512	Wang Y., Liu L., Song S., Li Y., Shen L., Yu H.	DOFT and DOFTIP1 affect reproductive development in the orchid Dendrobium Chao Praya Smile.	J. Exp. Bot.	68(21-22)	5759-5772	2017		
45276	29225351	Wei J., Wang A., Li R., Qu H., Jia Z.	Metabolome-wide association studies for agronomic traits of rice.	Heredity	120(4)	342-355	2018		
45277	29040767	Kusumi K., Hashimura A., Yamamoto Y., Negi J., Iba K.	Contribution of the S-type Anion Channel SLAC1 to Stomatal Control and Its Dependence on Developmental Stage in Rice.	Plant Cell Physiol.	58(12)	2085-2094	2017		
45278	29199124	Huo W.K., Liu M.Q., Weng X.Y., Qi Y.P.	recombinant rice xylanase inhibitor (RIXI) expressed in Escherichia coli and its inhibitory activity on family GH11endo-xylanases.	Int. J. Biol. Macromol.			2017		
45279	29282566	Wang Y., Jiang W., Liu H., Zeng Y., Du B., Zhu L., He G., Chen R.	Marker assisted pyramiding of Bph6 and Bph9 into elite restorer line 93-11 and development of functional marker for Bph9.	Rice (N Y)	10(1)	51	2017		
45280	29217592	Wu D., Liang W., Zhu W., Chen M., Ferr?ndiz C., Burton R.A., Dreni L., Zhang D.	Loss of LOFSEP Transcription Factor Function Converts Spikelet to Leaf-Like Structures in Rice.	Plant Physiol.	176(2)	1646-1664	2018		
45281	29696889	Cao N., Chen X.R., He H.H., Zhu C.L., Cai S., Xu T., Xie H.W., Liu F.P.	[Effects of different irrigation treatments during heading and flowering stage on cold resis-tance, yield and physiological characteristics of late rice].	Ying Yong Sheng Tai Xue Bao	28(12)	3935-3944	2017		
45282	29270189	Nakata M., Fukamatsu Y., Miyashita T., Hakata M., Kimura R., Nakata Y., Kuroda M., Yamaguchi T., Yamakawa H.	High Temperature-Induced Expression of Rice alpha-Amylases in Developing Endosperm Produces Chalky Grains.	Front Plant Sci	8	2089	2017		
45283	29242375	Lin C., Sauter M.	Control of Adventitious Root Architecture in Rice by Darkness, Light, and Gravity.	Plant Physiol.	176(2)	1352-1364	2018		
45284	29321899	Yang L., Li P., Li F., Ali S., Sun X., Hou M.	Silicon amendment to rice plants contributes to reduced feeding in a phloem-sucking insect through modulation of callose deposition.	Ecol Evol	8(1)	631-637	2018		
45285	29312380	Dang X., Fang B., Chen X., Li D., Sowadan O., Dong Z., Liu E., She D., Wu G., Liang Y., Hong D.	Favorable Marker Alleles for panicle exsertion Length in Rice (<i>Oryza sativa</i> L.) Mined by Association Mapping and the RSTEP-LRT Method.	Front Plant Sci	8	2112	2017		
45286	29253814	Faseela P., Puthur J.T.	The imprints of the high light and UV-B stresses in Oryza sativa L. 'Kanchana' seedlings are differentially modulated.	J. Photochem. Photobiol. B, Biol.	178	551-559	2018		
45287	29196814	Ghosh S., Kanwar P., Jha G.	Identification of candidate pathogenicity determinants of Rhizoctonia solani AG1-IA, which causes sheath blight disease in rice.	Curr. Genet.	64(3)	729-740	2018		
45288	29203347	Oh I.K., Bae I.Y., Lee H.G.	Effect of dry heat treatment on physical property and in vitro starch digestibility of High amylose rice starch.	Int. J. Biol. Macromol.	108	568-575	2018		
45289	29892844	Kang Y.J., Shim K.C., Lee H.S., Jeon Y.A., Kim S.H., Kang J.W., Yun Y.T., Park I.K., Ahn S.N.	Fine mapping and candidate gene analysis of the quantitative trait locus gw8.1 associated with grain length in rice.	Genes Genomics	40(4)	389-397	2018		
45290	29228906	Sarma S., Lodha M.	Phylogenetic relationship and domain organisation of SET domain proteins of Archaeplastida.	BMC Plant Biol.	17(1)	238	2017		
45291	29287760	Ke W., Cheng X., Cao D., Sun Q., Zhang Q.	Molluscicidal activity of Arisaema erubescens mixed with fertilizers against Oncomelania hupensis and its effect on rice germination and growth.	Acta Trop.	179	55-60	2018		
45292	29160592	Bezrutczyk M., Yang J., Eom J.S., Prior M., Sosso D., Hartwig T., Szurek B., Oliva R., Vera-Cruz C., White F.F., Yang B., Frommer W.B.	Sugar flux and signaling in plant-microbe interactions.	Plant J.	93(4)	675-685	2018		
45293	29238077	Mathew B., L?on J., Sillanp?? MJ.	A novel linkage-disequilibrium corrected genomic relationship matrix for SNP-heritability estimation and genomic prediction.	Heredity	120(4)	356-368	2018		
45294	29255474	Chen B.X., Li W.Y., Gao Y.T., Chen Z.J., Zhang W.N., Liu Q.J., Chen Z.	Corrigendum: Involvement of Polyamine Oxidase-Produced Hydrogen Peroxide during Coleorhiza-Limited Germination of Rice Seeds.	Front Plant Sci	8	2159	2017		
45295	29312386	Zhou Q., Zhang Z., Liu T., Gao B., Xiong X.	Identification and Map-Based Cloning of the Light-Induced Lesion Mimic Mutant 1 (<i>LIL1</i>) Gene in Rice.	Front Plant Sci	8	2122	2017	PR10A,POX22.3,LIL1,PR1B,POX3006	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,POX3006, prx114, PO-C1, POC-1, POC1
45296	29458719	Jirakkakul J., Roytrakul S., Srisuksam C., Swangmaneecharern P., Kittisenachai S., Jaresitthikunchai J., Punya J., Prommeenate P., Senachak J., So L., Tachaleat A., Tanticharoen M., Cheevadhanarak S., Wattanachaisaereekul S., Amnuaykanjanasin A.	Culture degeneration in conidia of Beauveria bassiana and virulence determinants by proteomics.	Fungal Biol	122(2-3)	156-171			
45297	29312420	Chen L., An Y., Li Y.X., Li C., Shi Y., Song Y., Zhang D., Wang T., Li Y.	Candidate Loci for Yield-Related Traits in Maize Revealed by a Combination of MetaQTL Analysis and Regional Association Mapping.	Front Plant Sci	8	2190	2017		
45298	29247303	Bettembourg M., Dal-Soglio M., Bureau C., Vernet A., Dardoux A., Portefaix M., Bes M., Meynard D., Mieulet D., Cayrol B., Perin C., Courtois B., Ma J.F., Dievart A.	Root cone angle is enlarged in DOCS1 LRR-RLK mutants in rice.	Rice (N Y)	10(1)	50	2017		
45299	29257136	Nie S.J., Liu Y.Q., Wang C.C., Gao S.W., Xu T.T., Liu Q., Chang H.L., Chen Y.B., Yan P.C., Peng W., Zheng T.Q., Xu J.L., Li Z.K.	Assembly of an early-matured japonica (Geng) rice genome, Suijing18, based on PacBio and Illumina sequencing.	Sci Data	4	170195	2017		
45300	29216292	Wu X.H., Wang W., Yin C.M., Hou H.J., Xie K.J., Xie X.L.	Water consumption, grain yield, and water productivity in response to field water management in double rice systems in China.	PLoS ONE	12(12)	e0189280	2017		
45301	29199103	Kaczmarzyk D., Cengic I., Yao L., Hudson E.P.	Diversion of the long-chain acyl-ACP pool in Synechocystis to fatty alcohols through CRISPRi repression of the essential phosphate acyltransferase PlsX.	Metab. Eng.	45	59-66	2018		
45302	29235492	Meng X., Xing S., Perez L.M., Peng X., Zhao Q., Redo?a ED., Wang C., Peng Z.	Proteome-wide Analysis of lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds.	Sci Rep	7(1)	17486	2017		
45303	29148143	Tufail A., Li H., Naeem A., Li T.X.	Leaf cell membrane stability-based mechanisms of zinc nutrition in mitigating salinity stress in rice.	Plant Biol (Stuttg)	20(2)	338-345	2018		
45304	29326750	Jia B., Zhu X.F., Pu Z.J., Duan Y.X., Hao L.J., Zhang J., Chen L.Q., Jeon C.O., Xuan Y.H.	Integrative View of the Diversity and Evolution of SWEET and SemiSWEET Sugar Transporters.	Front Plant Sci	8	2178	2017		
45305	29285711	Meng X., Hu X., Liu Q., Song X., Gao C., Li J., Wang K.	Robust genome editing of CRISPR-Cas9 at NAG PAMs in rice.	Sci China Life Sci	61(1)	122-125	2018		
45306	29276952	Fu H., Yu H., Li T., Zhang X.	Influence of cadmium stress on root exudates of high cadmium accumulating rice line (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	150	168-175	2018		
45307	29235343	Choi J.H., Wu J., Sawada A., Takeda S., Takemura H., Yogosawa K., Hirai H., Kondo M., Sugimoto K., Asakawa T., Inai M., Kan T., Kawagishi H.	N-Glucosides of Fairy Chemicals, 2-Azahypoxanthine and 2-Aza-8-oxohypoxanthine, in Rice.	Org. Lett.	20(1)	312-314	2018		
45308	29313810	Meng X., Lv Y., Mujahid H., Edelmann M.J., Zhao H., Peng X., Peng Z.	Proteome-wide lysine acetylation identification in developing rice (Oryza sativa) seeds and protein co-modification by acetylation, succinylation, ubiquitination, and phosphorylation.	Biochim. Biophys. Acta	1866(3)	451-463	2018		
45309	29230584	Ji H., Kim T.H., Lee G.S., Kang H.J., Lee S.B., Suh S.C., Kim S.L., Choi I., Baek J., Kim K.H.	Mapping of a major quantitative trait locus for bakanae disease resistance in rice by genome resequencing.	Mol. Genet. Genomics	293(3)	579-586	2018		
45310	29211972	Punjee P., Siripornadulsil W., Siripornadulsil S.	Reduction of cadmium uptake in rice endophytically colonized with the cadmium-tolerant bacterium Cupriavidus taiwanensis KKU2500-3.	Can. J. Microbiol.	64(2)	131-145	2018		
45311	29394277	Neeraja C.N., Kulkarni K.S., Madhu Babu P., Sanjeeva Rao D., Surekha K., Ravindra Babu V.	Transporter genes identified in landraces associated with high zinc in polished rice through panicle transcriptome for biofortification.	PLoS ONE	13(2)	e0192362	2018		
45312	29430376	Oh J.H., Lee Y.J., Byeon E.J., Kang B.C., Kyeoung D.S., Kim C.K.	Whole-genome resequencing and transcriptomic analysis of genes regulating anthocyanin biosynthesis in black rice plants.	3 Biotech	8(2)	115	2018		
45313	29467406	Wang Q., Nian J., Xie X., Yu H., Zhang J., Bai J., Dong G., Hu J., Bai B., Chen L., Xie Q., Feng J., Yang X., Peng J., Chen F., Qian Q., Li J., Zuo J.	Genetic variations in ARE1 mediate grain yield by modulating nitrogen utilization in rice.	Nat Commun	9(1)	735	2018	ARE1,ABC1	OsARE1,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT 
45314	29406604	Bossa-Castro AM., Tekete C., Raghavan C., Delorean E.E., Dereeper A., Dagno K., Koita O., Mosquera G., Leung H., Verdier V., Leach J.E.	Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population.	Plant Biotechnol. J.			2018		
45315	29785398	Singh V.K., Singh B.D., Kumar A., Maurya S., Krishnan S.G., Vinod K.K., Singh M.P., Ellur R.K., Bhowmick P.K., Singh A.K.	Marker-Assisted Introgression of <i>Saltol</i> QTL Enhances Seedling Stage salt tolerance in the Rice Variety "Pusa Basmati 1".	International Journal of Genomics	2018	8319879	2018		
45316	28990483	H?brard E., Pinel-Galzi A., Oludare A., Poulicard N., Aribi J., Fabre S., Issaka S., Mariac C., Dereeper A., Albar L., Silu? D., Fargette D.	Identification of a Hypervirulent Pathotype of Rice yellow mottle virus: A Threat to Genetic Resistance Deployment in West-Central Africa.	Phytopathology	108(2)	299-307	2018		
45317	29440319	Li C.L., Yang W.Z., Shi Z., Yuan H.S.	Tudor staphylococcal nuclease is a structure-specific ribonuclease that degrades RNA at unstructured regions during microRNA decay.	RNA	24(5)	739-748	2018		
45318	29692082	Lu Y.Q., Dai Y., Yu X.Y., Yu F.L., Jiang S.L., Zhou Z.Y., Chen F.J.	[Double-ambient CO2 concentration affects the growth, development and sucking behavior of non-target brown plant hopper Nilaparvata lugens fed on transgenic Bt rice.]	Ying Yong Sheng Tai Xue Bao	29(2)	651-658	2018		
45319	29467788	Yang Y., Zhang B., Zhou X., Romeis J., Peng Y., Li Y.	Toxicological and Biochemical Analyses Demonstrate the Absence of Lethal or Sublethal Effects of <i>Cry1C-</i> or <i>Cry2A</i>-Expressing <i>Bt</i> Rice on the Collembolan <i>Folsomia candida</i>.	Front Plant Sci	9	131	2018		
45320	29455311	Mi J., Yang D., Chen Y., Jiang J., Mou H., Huang J., Ouyang Y., Mou T.	Accelerated molecular breeding of a novel P/TGMS line with broad-spectrum resistance to rice blast and bacterial blight in two-line hybrid rice.	Rice (N Y)	11(1)	11	2018		
45321	29279303	Kitomi Y., Nakao E., Kawai S., Kanno N., Ando T., Fukuoka S., Irie K., Uga Y.	Fine Mapping of <i>QUICK ROOTING 1</i> and <i>2</i>, Quantitative Trait Loci Increasing root length in Rice.	G3 (Bethesda)	8(2)	727-735	2018		
45322	29126199	Choi J.Y., Purugganan M.D.	Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice.	Mol. Biol. Evol.	35(2)	365-382	2018		
45323	29892951	Gao Q., Xu S., Zhu X., Wang L., Yang Z., Zhao X.	Genome-wide identification and characterization of the RIO atypical kinase family in plants.	Genes Genomics	40(6)	669-683	2018		
45324	29417232	Xiang D.J., Man L.L., Zhang C.L., Peng-Liu, Li Z.G., Zheng G.C.	A new <Em class="new_gene">Em-like protein</Em> from Lactuca sativa, <Em class="new_gene">LsEm1</Em>, enhances drought and salt stress tolerance in Escherichia coli and rice.	Protoplasma	255(4)	1089-1106	2018		
45325	29393991	Feng Z., Uddling J., Tang H., Zhu J., Kobayashi K.	Comparison of crop yield sensitivity to ozone between open-top chamber and free-air experiments.	Glob Chang Biol	24(6)	2231-2238	2018		
45326	29495297	Zhu S., Ji Y., Ji J., Bie T., Gao A., He H.	Fine Physical Bin Mapping of the Powdery Mildew Resistance Gene <i>Pm21</i> Based on Chromosomal Structural Variations in Wheat.	Int J Mol Sci	19(2)		2018		
45327	29449858	Wang G., Xiao Y., Deng X., Zhang H., Li T., Chen H.	Exogenous Hydrogen Peroxide Contributes to Heme Oxygenase-1 Delaying Programmed Cell Death in Isolated Aleurone Layers of Rice Subjected to Drought Stress in a cGMP-Dependent Manner.	Front Plant Sci	9	84	2018		
45328	29336033	Chen H., Zhang Q., Cai H., Zhou W., Xu F.	H2 O2 mediates nitrate-induced iron chlorosis by regulating iron homeostasis in rice.	Plant Cell Environ.	41(4)	767-781	2018		
45329	29304198	Yamatani H., Kohzuma K., Nakano M., Takami T., Kato Y., Hayashi Y., Monden Y., Okumoto Y., Abe T., Kumamaru T., Tanaka A., Sakamoto W., Kusaba M.	Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice.	J. Exp. Bot.	69(5)	1027-1035	2018	DYE1,CAB1R,CAB2R	cab, cab-n8, Lhca4, OsLhca4,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,cab2R, CAB-2, OsLhcp, Lhcb1, Lhcb1a, OsLhcb1, OsLhcb1a 
45330	29391460	Subudhi P.K., De Leon TB., Tapia R., Chai C., Karan R., Ontoy J., Singh P.K.	Genetic interaction involving photoperiod-responsive Hd1 promotes early flowering under long-day conditions in rice.	Sci Rep	8(1)	2081	2018		
45331	29409859	Deng H., Cheema J., Zhang H., Woolfenden H., Norris M., Liu Z., Liu Q., Yang X., Yang M., Deng X., Cao X., Ding Y.	Rice In?Vivo RNA Structurome Reveals RNA Secondary Structure Conservation and Divergence in Plants.	Mol Plant	11(4)	607-622	2018		
45332	29473711	Jiang P., Wang S., Ikram A.U., Xu Z., Jiang H., Cheng B., Ding Y.	SDG721 and SDG705 are required for rice growth.	J Integr Plant Biol			2018		
45333	29440679	Luo J.S., Huang J., Zeng D.L., Peng J.S., Zhang G.B., Ma H.L., Guan Y., Yi H.Y., Fu Y.L., Han B., Lin H.X., Qian Q., Gong J.M.	A defensin-like protein drives cadmium efflux and allocation in rice.	Nat Commun	9(1)	645	2018	CAL1	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1
45334	29411865	Corbin J.M., Kailemia M.J., Cadieux C.L., Alkanaimsh S., Karuppanan K., Rodriguez R.L., Lebrilla C.B., Cerasoli D.M., McDonald K.A., Nandi S.	Purification, characterization, and N-glycosylation of Recombinant butyrylcholinesterase from transgenic rice cell suspension cultures.	Biotechnol. Bioeng.	115(5)	1301-1310	2018		
45335	29216416	Ferrero-Serrano ?., Su Z., Assmann S.M.	Illuminating the role of the Galpha heterotrimeric G protein subunit, RGA1, in regulating photoprotection and photoavoidance in rice.	Plant Cell Environ.	41(2)	451-468	2018		
45336	29535747	Fang J., Nan P., Gu Z., Ge X., Feng Y.Q., Lu B.R.	Overexpressing Exogenous 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) Genes Increases Fecundity and Auxin Content of Transgenic Arabidopsis Plants.	Front Plant Sci	9	233	2018		
45337	29413631	Zhong C., Cao X., Bai Z., Zhang J., Zhu L., Huang J., Jin Q.	Nitrogen metabolism correlates with the acclimation of photosynthesis to short-term water stress in rice (Oryza sativa L.).	Plant Physiol. Biochem.	125	52-62	2018		
45338	29476225	Kumar K., Sarao P.S., Bhatia D., Neelam K., Kaur A., Mangat G.S., Brar D.S., Singh K.	High-resolution genetic mapping of a novel brown planthopper resistance locus, Bph34 in Oryza sativa L. X Oryza nivara (Sharma & Shastry) derived interspecific F2 population.	Theor. Appl. Genet.	131(5)	1163-1171	2018	BPH34	Bph34
45339	29576077	Whitcomb S.J., Nguyen H.C., Br?ckner F., Hesse H., Hoefgen R.	CYSTATHIONINE GAMMA-synthase activity in rice is developmentally regulated and strongly correlated with sulfate.	Plant Sci.	270	234-244	2018		
45340	29402905	Das G., Rao G.J.N., Varier M., Prakash A., Prasad D.	Improved Tapaswini having four BB resistance genes pyramided with six genes/QTLs, resistance/tolerance to biotic and abiotic stresses in rice.	Sci Rep	8(1)	2413	2018		
45341	29430353	Gumi A.M., Guha P.K., Mazumder A., Jayaswal P., Mondal T.K.	Characterization of <i>OglDREB2A</i> gene from African rice (<i>Oryza glaberrima</i>), comparative analysis and its transcriptional regulation under salinity stress.	3 Biotech	8(2)	91	2018		
45342	29395084	Park J.H., Jung S.	Perturbations in carotenoid and porphyrin status result in differential photooxidative stress signaling and antioxidant responses.	Biochem. Biophys. Res. Commun.	496(3)	840-845	2018		
45343	29432414	Ono S., Liu H., Tsuda K., Fukai E., Tanaka K., Sasaki T., Nonomura K.I.	EAT1 transcription factor, a non-cell-autonomous regulator of pollen production, activates meiotic small RNA biogenesis in rice anther tapetum.	PLoS Genet.	14(2)	e1007238	2018		
45344	29453050	Zhang Z., Cheng H., Chen H., Chen K., Lu X., Ouyang P., Fu J.	Enhancement in the aromatic yield from the catalytic fast pyrolysis of rice straw over hexadecyl trimethyl ammonium bromide modified hierarchical HZSM-5.	Bioresour. Technol.	256	241-246	2018		
45345	29412473	Tawaraya K., Honda S., Cheng W., Chuba M., Okazaki Y., Saito K., Oikawa A., Maruyama H., Wasaki J., Wagatsuma T.	Ancient rice cultivar extensively replaces phospholipids with non-phosphorus glycolipid under phosphorus deficiency.	Physiol Plant			2018		
45346	29440497	Lonhienne T., Garcia M.D., Pierens G., Mobli M., Nouwens A., Guddat L.W.	Structural insights into the mechanism of inhibition of AHAS by herbicides.	Proc. Natl. Acad. Sci. U.S.A.	115(9)	E1945-E1954	2018		
45347	29532023	Yoshimura M., Sato A., Kuwata K., Inukai Y., Kinoshita T., Itami K., Tsuchiya Y., Hagihara S.	Discovery of shoot branching Regulator Targeting strigolactone receptor DWARF14.	ACS Cent Sci	4(2)	230-234	2018		
45348	29427065	Zhang Y., Liu K., Zhu X., Wu Y., Zhang S., Chen H., Ling J., Wang Y., Fang X.	Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.	Plant Cell Rep.	37(5)	775-787	2018	DREB1B,SLR1,_,DREB1A,DREB1C	OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsVTE2, VTE2, SGD1, RTD1, OsHPT, HPT ,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98
45349	29398646	Afrin W., Nafis M.H., Hossain M.A., Islam M.M., Hossain M.A.	Responses of rice (Oryza sativa L.) genotypes to different levels of submergence.	C. R. Biol.	341(2)	85-96	2018		
45350	29576076	Wang Y., Wang C., Liu Y., Yu K., Zhou Y.	GmHMA3 sequesters Cd to the root endoplasmic reticulum to limit translocation to the stems in soybean.	Plant Sci.	270	23-29	2018		
45351	29355926	Yaguchi M., Kozaki A.	Plant S6 kinases do not require hydrophobic motif phosphorylation for activity in yeast lacking Ypk3.	FEBS Lett.	592(4)	610-620	2018		
45352	29429010	Wei S., Cui H., Zhu Y., Lu Z., Pang S., Zhang S., Dong H., Su X.	Shifts of methanogenic communities in response to permafrost thaw results in rising methane emissions and soil property changes.	Extremophiles	22(3)	447-459	2018		
45353	29449862	Huang L., Wang Y., Wang W., Zhao X., Qin Q., Sun F., Hu F., Zhao Y., Li Z., Fu B., Li Z.	Characterization of Transcription Factor Gene <i>OsDRAP1</i> Conferring drought tolerance in Rice.	Front Plant Sci	9	94	2018		
45354	29391416	Wang J., Zhu J., Zhang Y., Fan F., Li W., Wang F., Zhong W., Wang C., Yang J.	Comparative transcriptome analysis reveals molecular response to salinity stress of salt-tolerant and sensitive genotypes of indica rice at seedling stage.	Sci Rep	8(1)	2085	2018		
45355	29576072	Luo L., Wang H., Liu X., Hu J., Zhu X., Pan S., Qin R., Wang Y., Zhao P., Fan X., Xu G.	Strigolactones affect the translocation of nitrogen in rice.	Plant Sci.	270	190-197	2018		
45356	29210524	Shi X., Chen S., Peng Y., Wang Y., Chen J., Hu Z., Wang B., Li A., Chao D., Li Y., Teng S.	TSC1 enables plastid development under dark conditions, contributing to rice adaptation to transplantation shock.	J Integr Plant Biol	60(2)	112-129	2018		
45357	29487318	Sun S., Wang L., Mao H., Shao L., Li X., Xiao J., Ouyang Y., Zhang Q.	A G-protein pathway determines grain size.in rice.	Nat Commun	9(1)	851	2018	RGB1,LK3,DEP1,GGC2,D1	OsWD40-80, RGbeta1,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89
45358	29392476	Chen F., Dong G., Ma X., Wang F., Zhang Y., Xiong E., Wu J., Wang H., Qian Q., Wu L., Yu Y.	UMP kinase activity is involved in proper chloroplast development in rice.	Photosyn. Res.	137(1)	53-67	2018		
45359	29272531	Honda E., Yew C.L., Yoshikawa T., Sato Y., Hibara K.I., Itoh J.I.	LEAF LATERAL SYMMETRY1, a Member of the WUSCHEL-RELATED HOMEOBOX3 Gene Family, Regulates Lateral Organ Development Differentially from Other Paralogs, NARROW LEAF2 and NARROW LEAF3 in Rice.	Plant Cell Physiol.	59(2)	376-391	2018		
45360	29576065	Wu T.Y., Gruissem W., Bhullar N.K.	Facilitated citrate-dependent iron translocation increases rice endosperm iron and zinc concentrations.	Plant Sci.	270	13-22	2018		
45361	29489838	Ma N.L., Che Lah WA., Abd Kadir N., Mustaqim M., Rahmat Z., Ahmad A., Lam S.D., Ismail M.R.	Susceptibility and tolerance of rice crop to salt threat: Physiological and metabolic inspections.	PLoS ONE	13(2)	e0192732	2018		
45362	29478138	Tabkhkar N., Rabiei B., Samizadeh Lahiji H., Hosseini Chaleshtori M.	Genetic Variation and Association Analysis of the SSR Markers Linked to the Major Drought-Yield QTLs of Rice.	Biochem. Genet.			2018		
45363	29476918	Yan F., Kuang Y., Ren B., Wang J., Zhang D., Lin H., Yang B., Zhou X., Zhou H.	Highly Efficient AET to GEC Base Editing by Cas9n-Guided tRNA Adenosine Deaminase in Rice.	Mol Plant	11(4)	631-634	2018		
45364	29487275	Pasriga R., Cho L.H., Yoon J., An G.	Identification of the Regulatory Region Responsible for Vascular Tissue-Specific Expression in the Rice <i>Hd3a</i> Promoter.	Mol. Cells	41(4)	342-350	2018		
45365	29425206	Shrestha A., Dziwornu A.K., Ueda Y., Wu L.B., Mathew B., Frei M.	Genome-wide association study to identify candidate loci and genes for Mn toxicity tolerance in rice.	PLoS ONE	13(2)	e0192116	2018		
45366	29437777	Oszvald M., Primavesi L.F., Griffiths C.A., Cohn J., Basu S.S., Nuccio M.L., Paul M.J.	Trehalose 6-Phosphate Regulates Photosynthesis and Assimilate Partitioning in Reproductive Tissue.	Plant Physiol.	176(4)	2623-2638	2018		
45367	29446008	Omar A.A., Murata M.M., El-Shamy HA., Graham J.H., Grosser J.W.	Enhanced resistance to citrus canker in transgenic mandarin expressing Xa21 from rice.	Transgenic Res.	27(2)	179-191	2018		
45368	29427309	Tian J.C., Wang G.W., Han H.L., Romeis J., Zhang F.C., Ye G.Y., Xie M.C., Wang G.Y., Lu Z.X.	The rice planthopper parasitoid Anagrus nilaparvatae is not at risk when feeding on honeydew derived from Bacillus thuringiensis (Bt) rice.	Pest Manag. Sci.			2018		
45369	29407784	Moulick D., Santra S.C., Ghosh D.	Effect of selenium induced seed priming on arsenic accumulation in rice plant and subsequent transmission in human food chain.	Ecotoxicol. Environ. Saf.	152	67-77	2018		
45370	29479714	Yoneyama K., Mori N., Sato T., Yoda A., Xie X., Okamoto M., Iwanaga M., Ohnishi T., Nishiwaki H., Asami T., Yokota T., Akiyama K., Yoneyama K., Nomura T.	Conversion of carlactone to carlactonoic acid is a conserved function of MAX1 homologs in strigolactone biosynthesis.	New Phytol.	218(4)	1522-1533	2018		
45371	29475897	Minami A., Yano K., Gamuyao R., Nagai K., Kuroha T., Ayano M., Nakamori M., Koike M., Kondo Y., Niimi Y., Kuwata K., Suzuki T., Higashiyama T., Takebayashi Y., Kojima M., Sakakibara H., Toyoda A., Fujiyama A., Kurata N., Ashikari M., Reuscher S.	Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding.	Plant Physiol.	176(4)	3081-3102	2018		
45372	29479780	Deng F., Yamaji N., Ma J.F., Lee S.K., Jeon J.S., Martinoia E., Lee Y., Song W.Y.	Engineering rice with lower grain arsenic.	Plant Biotechnol. J.			2018		
45373	29476246	Chen P.F., Chen L., Jiang Z.R., Wang G.P., Wang S.H., Ding Y.F.	Sucrose is involved in the regulation of iron deficiency responses in rice (Oryza sativa L.).	Plant Cell Rep.	37(5)	789-798	2018		
45374	29453432	Jain N., Vergish S., Khurana J.P.	Validation of house-keeping genes for normalization of gene expression data during diurnal/circadian studies in rice by RT-qPCR.	Sci Rep	8(1)	3203	2018		
45375	29487612	Wang W., He A., Peng S., Huang J., Cui K., Nie L.	The Effect of Storage Condition and Duration on the Deterioration of Primed Rice Seeds.	Front Plant Sci	9	172	2018		
45376	29696893	Li Y.N., Lu L., Liu Y.	[Tasseled cap triangle (TCT)-leaf area index (LAI)model of rice fields based on PROSAIL model and its application].	Ying Yong Sheng Tai Xue Bao	28(12)	3976-3984	2017		
45377	29182721	Ronald P., Joe A.	Molecular mimicry modulates plant host responses to pathogens.	Ann. Bot.	121(1)	17-23	2018		
45378	29387899	Kadambari G., Vemireddy L.R., Srividhya A., Nagireddy R., Jena S.S., Gandikota M., Patil S., Veeraghattapu R., Deborah D.A.K., Reddy G.E., Shake M., Dasari A., Ramanarao P.V., Durgarani C.V., Neeraja C.N., Siddiq E.A., Sheshumadhav M.	QTL-Seq-based genetic analysis identifies a major genomic region governing dwarfness in rice (Oryza sativa L.).	Plant Cell Rep.	37(4)	677-687	2018	ASD1	IWS1, OsIWS1
45379	29376517	Cui Y., Liu Z., LI Y., Zhou F., Chen H., Lin Y.	Corrigendum: Application of a novel phosphinothricin N-acetyltransferase (RePAT) gene in developing glufosinate-resistant rice.	Sci Rep	8	46937	2018		
45380	29373562	Chen Y.S., Zaro J.L., Zhang D., Huang N., Simon A., Shen W.C.	Characterization and Oral Delivery of Proinsulin-Transferrin Fusion Protein Expressed Using ExpressTec.	Int J Mol Sci	19(2)		2018		
45381	29294038	Wagatsuma T., Maejima E., Watanabe T., Toyomasu T., Kuroda M., Muranaka T., Ohyama K., Ishikawa A., Usui M., Hossain Khan S., Maruyama H., Tawaraya K., Kobayashi Y., Koyama H.	Dark conditions enhance aluminum tolerance in several rice cultivars via multiple modulations of membrane sterols.	J. Exp. Bot.	69(3)	567-577	2018		
45382	29386629	Jaemsaeng R., Jantasuriyarat C., Thamchaipenet A.	Molecular interaction of 1-aminocyclopropane-1-carboxylate deaminase (ACCD)-producing endophytic Streptomyces sp. GMKU 336 towards salt-stress resistance of Oryza sativa L. cv. KDML105.	Sci Rep	8(1)	1950	2018		
45383	29340787	Xu W., Liu W., Ye R., Mazarei M., Huang D., Zhang X., Stewart C.N.	A profilin gene promoter from switchgrass (Panicum virgatum L.) directs strong and specific transgene expression to vascular bundles in rice.	Plant Cell Rep.	37(4)	587-597	2018		
45384	29373575	Waqas M., Shahzad R., Hamayun M., Asaf S., Khan A.L., Kang S.M., Yun S., Kim K.M., Lee I.J.	Biochar amendment changes jasmonic acid levels in two rice varieties and alters their resistance to herbivory.	PLoS ONE	13(1)	e0191296	2018		
45385	29330361	Mondal T.K., Panda A.K., Rawal H.C., Sharma T.R.	Discovery of microRNA-target modules of African rice (Oryza glaberrima) under salinity stress.	Sci Rep	8(1)	570	2018		
45386	29335439	Wu X., Wang W., Xie X., Yin C., Hou H., Yan W., Wang G.	Net global warming potential and greenhouse gas intensity as affected by different water management strategies in Chinese double rice-cropping systems.	Sci Rep	8(1)	779	2018		
45387	29110008	Li X., He Y., Xie C., Zu Y., Zhan F., Mei X., Xia Y., Li Y.	Effects of UV-B radiation on the infectivity of Magnaporthe oryzae and rice disease-resistant physiology in Yuanyang terraces.	Photochem. Photobiol. Sci.	17(1)	8-17	2018		
45388	29372429	Casartelli A., Riewe D., Hubberten H.M., Altmann T., Hoefgen R., Heuer S.	Exploring traditional aus-type rice for metabolites conferring drought tolerance.	Rice (N Y)	11(1)	9	2018		
45389	29368405	Li Z., Li L.K., Liu B., Wang L., Parajulee M.N., Chen F.J.	Effects of seed mixture sowing with transgenic Bt rice and its parental line on the population dynamics of target stemborers and leafrollers, and non-target planthoppers.	Insect Science			2018		
45390	29374240	Sandhu N., Dixit S., Swamy B.P.M., Vikram P., Venkateshwarlu C., Catolos M., Kumar A.	Positive interactions of major-effect QTLs with genetic background that enhances rice yield under drought.	Sci Rep	8(1)	1626	2018		
45391	29364524	Chen L., Zhao Y., Xu S., Zhang Z., Xu Y., Zhang J., Chong K.	OsMADS57 together with OsTB1 coordinates transcription of its target OsWRKY94 and D14 to switch its organogenesis to defense for cold adaptation in rice.	New Phytol.	218(1)	219-231	2018		
45392	29294052	Wang L., Guo M., Li Y., Ruan W., Mo X., Wu Z., Sturrock C.J., Yu H., Lu C., Peng J., Mao C.	LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice.	J. Exp. Bot.	69(3)	385-397	2018	LRA1	OsPIN2, PIN2, OsLRA1
45393	29344835	Morey S.R., Hirose T., Hashida Y., Miyao A., Hirochika H., Ohsugi R., Yamagishi J., Aoki N.	Genetic Evidence for the Role of a Rice Vacuolar Invertase as a Molecular Sink Strength Determinant.	Rice (N Y)	11(1)	6	2018		
45394	29387076	Quan R., Wang J., Hui J., Bai H., Lyu X., Zhu Y., Zhang H., Zhang Z., Li S., Huang R.	Improvement of salt tolerance Using Wild Rice Genes.	Front Plant Sci	8	2269	2017		
45395	29342190	Yang J., Du L., Gong W., Shi S., Sun J., Chen B.	Potential of vegetation indices combined with laser-induced fluorescence parameters for monitoring leaf nitrogen content in paddy rice.	PLoS ONE	13(1)	e0191068	2018		
45396	29382171	Katsumata S., Toshima H., Hasegawa M.	Xylosylated Detoxification of the Rice Flavonoid Phytoalexin Sakuranetin by the Rice Sheath Blight Fungus Rhizoctonia solani.	Molecules	23(2)		2018		
45397	29353448	Acevedo L.A., Nicholson L.K.	1H, 13C and 15N NMR assignments of cyclophilin LRT2 (OsCYP2) from rice.	Biomol NMR Assign	12(1)	171-174	2018		
45398	29286886	Tsunemitsu Y., Yamaji N., Ma J.F., Kato S.I., Iwasaki K., Ueno D.	Rice reduces Mn uptake in response to Mn stress.	Plant Signal Behav	13(1)	e1422466	2018	MTP8,MTP8.1,MTP9,NRAMP5	OsMTP8, MTP8.2, OsMTP8.2,OsMTP8.1,OsMTP9,OsNRAMP5, OsNramp5
45399	29356995	Singh V.K., Ellur R.K., Singh A.K., Nagarajan M., Singh B.D., Singh N.K.	Effect of qGN4.1 QTL for grain number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice.	Rice (N Y)	11(1)	8	2018		
45400	29375598	Vo K.T.X., Kim C.Y., Hoang T.V., Lee S.K., Shirsekar G., Seo Y.S., Lee S.W., Wang G.L., Jeon J.S.	OsWRKY67 Plays a Positive Role in Basal and XA21-Mediated Resistance in Rice.	Front Plant Sci	8	2220	2017		
45401	29334902	Gonzalez D.O., Church J.B., Robinson A., Connell J.P., Sopko M., Rowland B., Woodall K., Larsen C.M., Davies J.P.	Expression characterization of the herbicide tolerance gene Aryloxyalkanoate Dioxygenase (aad-1) controlled by seven combinations of regulatory elements.	BMC Plant Biol.	18(1)	14	2018		
45402	29363563	Yang Q.Q., Zhao D.S., Zhang C.Q., Wu H.Y., Li Q.F., Gu M.H., Sun S.S., Liu Q.Q.	A Connection between Lysine and Serotonin Metabolism in Rice Endosperm.	Plant Physiol.	176(3)	1965-1980	2018	GAD1,_,SL,_,_,TDC2,_,TDC1,TDC3,CRO,LOX2	OsGAD1, GDC,OsEnS-108, EnS-108, DEFL,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,ACX2, OsACX2,,OsTDC2,GDCi, OsGDCi,OsTDC, TDC2, OsTDC1,OsTDC3,OsCRO,OsLOX2
45403	29551212	Rais A., Shakeel M., Malik K., Hafeez F.Y., Yasmin H., Mumtaz S., Hassan M.N.	Antagonistic Bacillus spp. reduce blast incidence on rice and increase grain yield under field conditions.	Microbiol. Res.	208	54-62	2018		
45404	29382569	Ren B., Yan F., Kuang Y., Li N., Zhang D., Zhou X., Lin H., Zhou H.	Improved Base Editor for Efficiently Inducing Genetic Variations in Rice with CRISPR/Cas9-Guided Hyperactive hAID Mutant.	Mol Plant	11(4)	623-626	2018		
45405	29210506	Zhang J., Zhang H., Botella J.R., Zhu J.K.	Generation of new glutinous rice by CRISPR/Cas9-targeted mutagenesis of the Waxy gene in elite rice varieties.	J Integr Plant Biol	60(5)	369-375	2018		
45406	29337869	Ding L., Li Y., Gao L., Lu Z., Wang M., Ling N., Shen Q., Guo S.	Aquaporin Expression and Water Transport Pathways inside Leaves Are Affected by Nitrogen Supply through Transpiration in Rice Plants.	Int J Mol Sci	19(1)		2018		
45407	29373953	Zhang Q., Oh D.H., DiTusa S.F., RamanaRao MV., Baisakh N., Dassanayake M., Smith A.P.	Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression.	BMC Genomics	19(1)	97	2018		
45408	29331540	Gnesutta N., Mantovani R., Fornara F.	Plant Flowering: Imposing DNA Specificity on Histone-Fold Subunits.	Trends Plant Sci.	23(4)	293-301	2018		
45409	29304121	Ngangkham U., Samantaray S., Yadav M.K., Kumar A., Chidambaranathan P., Katara J.L.	Effect of multiple allelic combinations of genes on regulating grain size.in rice.	PLoS ONE	13(1)	e0190684	2018	GW8,GS7,DEP1,_,LK3,GS5,GW2	SPL16, OsSPL16, SLP1, qGW8,,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,OsSCP26, SCP26, OsGS5,OsGW2
45410	29305728	Kim S.H., Kwon C.T., Song G., Koh H.J., An G., Paek N.C.	The rice zebra3 (Z3) mutation disrupts citrate distribution and produces transverse dark-green/green variegation in mature leaves.	Rice (N Y)	11(1)	1	2018		
45411	29298333	Zhang H., Liu S., Chen G., Liu X., Xuan N., Yang Y., Liu W., Ding H., Yao F.	Genetic dissection of QTLs and differentiation analysis of alleles for heading date genes in rice.	PLoS ONE	13(1)	e0190491	2018		
45412	29354099	Zhao C.Z., Huang J., Gyaneshwar P., Zhao D.	<i>Rhizobium</i> sp. IRBG74 Alters <i>Arabidopsis</i> Root Development by Affecting Auxin Signaling.	Front Microbiol	8	2556	2017		
45413	29298667	Batayeva D., Labaco B., Ye C., Li X., Usenbekov B., Rysbekova A., Dyuskalieva G., Vergara G., Reinke R., Leung H.	Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm.	BMC Genet.	19(1)	2	2018		
45414	29162684	Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.	Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.	G3 (Bethesda)	8(1)	253-263	2018	RBCS,PSBA,CAB1R,OBGM,YGL1,_,RPL21,PSAA,TSV3,FGL,OBGC1,RBCL,YGL10	rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,OsObgM, ObgM,OsYGL1, CHLG, Ygl1, CS, OsCHLG,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,OsRPL21, Rpl21, OsRpl21,PsaA, psaA, PsAA1,OsObgC2, ObgC2, TSV3/OsObgC2,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,OsObgC1, ObgC1,rbcL, rbcA, OsrbcL,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
45415	29354150	Lu Q., Niu X., Zhang M., Wang C., Xu Q., Feng Y., Yang Y., Wang S., Yuan X., Yu H., Wang Y., Chen X., Liang X., Wei X.	Genome-Wide Association Study of seed dormancy and the Genomic Consequences of Improvement Footprints in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	8	2213	2017		
45416	29304739	Ullah F., Hamilton M., Reddy A.S.N., Ben-Hur A.	Exploring the relationship between intron retention and chromatin accessibility in plants.	BMC Genomics	19(1)	21	2018		
45417	28977518	Lu K., Li T., He J., Chang W., Zhang R., Liu M., Yu M., Fan Y., Ma J., Sun W., Qu C., Liu L., Li N., Liang Y., Wang R., Qian W., Tang Z., Xu X., Lei B., Zhang K., Li J.	qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms.	Nucleic Acids Res.	46(D1)	D1229-D1236	2018		
45418	29322237	Zhang M., Ye J., Xu Q., Feng Y., Yuan X., Yu H., Wang Y., Wei X., Yang Y.	Genome-wide association study of cold tolerance of Chinese indica rice varieties at the bud burst stage.	Plant Cell Rep.	37(3)	529-539	2018		
45419	29320723	Singh T.P., Sogi D.S.	Comparative study of structural and functional characterization of bran protein concentrates from superfine, fine and coarse rice cultivars.	Int. J. Biol. Macromol.	111	281-288	2018		
45420	29317720	Liu K., He A., Ye C., Liu S., Lu J., Gao M., Fan Y., Lu B., Tian X., Zhang Y.	Root Morphological Traits and Spatial Distribution under Different Nitrogen Treatments and Their Relationship with grain yield in Super Hybrid Rice.	Sci Rep	8(1)	131	2018		
45421	29316385	Sheshukova K.A., Wilken L.R.	Analysis of recombinant human serum albumin Extraction and Degradation in Transgenic Rice Extracts.	Biotechnol. Prog.			2018		
45422	29313662	Chu J.M., Ye T.T., Ma C.J., Lan M.D., Liu T., Yuan B.F., Feng Y.Q.	Existence of Internal N7-Methylguanosine Modification in mRNA Determined by Differential Enzyme Treatment Coupled with Mass Spectrometry Analysis.	ACS Chem. Biol.			2018		
45423	29321648	Peng C., Chen X., Wang X., Xu X., Wei W., Wang C., Xu J.	Comparative analysis of miRNA expression profiles in transgenic and non-transgenic rice using miRNA-Seq.	Sci Rep	8(1)	338	2018		
45424	29322324	Lee S.B., Hur Y.J., Cho J.H., Lee J.H., Kim T.H., Cho S.M., Song Y.C., Seo Y.S., Lee J., Kim T.S., Park Y.J., Oh M.K., Park D.S.	Molecular mapping of qBK1 WD , a major QTL for bakanae disease resistance in rice.	Rice (N Y)	11(1)	3	2018		
45425	29310584	Pan T., Lin L., Wang J., Liu Q., Wei C.	Long branch-chains of amylopectin with B-type crystallinity in rice seed with inhibition of starch branching enzyme I and IIb resist in situ degradation and inhibit plant growth during seedling development : Degradation of rice starch with inhibition of SBEI/IIb during seedling development.	BMC Plant Biol.	18(1)	9	2018		
45426	29126343	Zhou H., Finkemeier I., Guan W., Tossounian M.A., Wei B., Young D., Huang J., Messens J., Yang X., Zhu J., Wilson M.H., Shen W., Xie Y., Foyer C.H.	oxidative stress-triggered interactions between the succinyl- and acetyl-proteomes of rice leaves.	Plant Cell Environ.	41(5)	1139-1153	2018		
45427	29331724	Ranjan R., Kumar N., Dubey A.K., Gautam A., Pandey S.N., Mallick S.	Diminution of arsenic accumulation in rice seedlings co-cultured with Anabaena sp.: Modulation in the expression of lower silicon transporters, two nitrogen dependent genes and lowering of antioxidants activity.	Ecotoxicol. Environ. Saf.	151	109-117	2018		
45428	29354282	Ajmera I., Shi J., Giri J., Wu P., Stekel D.J., Lu C., Hodgman T.C.	Regulatory feedback response mechanisms to phosphate starvation in rice.	NPJ Syst Biol Appl	4	4	2018		
45429	29359127	Solis J., Gutierrez A., Mangu V., Sanchez E., Bedre R., Linscombe S., Baisakh N.	Genetic Mapping of Quantitative Trait Loci for grain yield under Drought in Rice under Controlled Greenhouse Conditions.	Front Chem	5	129	2017		
45430	29298308	Ma X., Zheng Z., Lin F., Ge T., Sun H.	Genetic analysis and gene mapping of a low stigma exposed mutant gene by high-throughput sequencing.	PLoS ONE	13(1)	e0186942	2018	LESR	
45431	29301510	Jang S.W., Kim Y., Khan A.L., Na C.I., Lee I.J.	Exogenous short-term silicon application regulates macro-nutrients, endogenous phytohormones, and protein expression in Oryza sativa L.	BMC Plant Biol.	18(1)	4	2018	_,_,_,IMPA1B	PetC,OsMed22_1, Med22_1,,Imp3, OsImpalpha1b, Impalpha1b
45432	29354362	Rehman S., J?rgensen B., Rasmussen S.K., Aziz E., Akhtar W., Mahmood T.	Expression analysis of proteinase inhibitor-II under <i>Os</i>RGLP2 promoter in response to wounding and signaling molecules in transgenic <i>Nicotiana benthamiana</i>.	3 Biotech	8(1)	51	2018		
45433	29299612	Zhou Y., Tao Y., Yuan Y., Zhang Y., Miao J., Zhang R., Yi C., Gong Z., Yang Z., Liang G.	Characterisation of a novel quantitative trait locus, GN4-1, for grain number and yield in rice (Oryza sativa L.).	Theor. Appl. Genet.	131(3)	637-648	2018		
45434	29366830	Du H., Huang F., Wu N., Li X., Hu H., Xiong L.	Integrative Regulation of Drought Escape through ABA-Dependent and -Independent Pathways in?Rice.	Mol Plant	11(4)	584-597	2018		
45435	29342194	Frouin J., Languillaume A., Mas J., Mieulet D., Boisnard A., Labeyrie A., Bettembourg M., Bureau C., Lorenzini E., Portefaix M., Turquay P., Vernet A., P?rin C., Ahmadi N., Courtois B.	Tolerance to mild salinity stress in japonica rice: A genome-wide association mapping study highlights calcium signaling and metabolism genes.	PLoS ONE	13(1)	e0190964	2018		
45436	29237079	Nemoto Y., Hori K., Izawa T.	Fine-tuning of the setting of critical day length by two casein kinases in rice photoperiodic flowering.	J. Exp. Bot.	69(3)	553-565	2018		
45437	29314086	Perata P.	The rice SUB1A gene: Making adaptation to submergence and post-submergence possible.	Plant Cell Environ.	41(4)	717-720	2018		
45438	29367191	Meng L., Sun L., Tan L.	Progress in ZIP transporter gene family in rice.	Yi Chuan	40(1)	33-43	2018		
45439	29367235	Zhang J., Zhang H., Srivastava A.K., Pan Y., Bai J., Fang J., Shi H., Zhu J.K.	Knockdown of Rice MicroRNA166 Confers Drought Resistance by Causing leaf rolling and Altering Stem Xylem Development.	Plant Physiol.	176(3)	2082-2094	2018	HB4	OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3
45440	29434613	Ye J., Niu X., Yang Y., Wang S., Xu Q., Yuan X., Yu H., Wang Y., Wang S., Feng Y., Wei X.	Divergent <i>Hd1</i>, <i>Ghd7</i>, and <i>DTH7</i> Alleles Control heading date and Yield Potential of <i>Japonica</i> Rice in Northeast China.	Front Plant Sci	9	35	2018		
45441	29329278	Oda Y., Kobayashi N.I., Tanoi K., Ma J.F., Itou Y., Katsuhara M., Itou T., Horie T.	T-DNA Tagging-Based Gain-of-Function of OsHKT1;4 Reinforces Na Exclusion from Leaves and Stems but Triggers Na Toxicity in Roots of Rice Under Salt Stress.	Int J Mol Sci	19(1)		2018		
45442	29354152	Chen G., Liu C., Gao Z., Zhang Y., Zhang A., Zhu L., Hu J., Ren D., Yu L., Xu G., Qian Q.	Variation in the Abundance of <i>OsHAK1</i> Transcript Underlies the Differential Salinity Tolerance of an <i>indica</i> and a <i>japonica</i> Rice Cultivar.	Front Plant Sci	8	2216	2017		
45443	29304466	Liang C., Xiao H., Hu Z., Zhang X., Hu J.	Uptake, transportation, and accumulation of C60 fullerene and heavy metal ions (Cd, Cu, and Pb) in rice plants grown in an agricultural soil.	Environ. Pollut.	235	330-338	2018		
45444	27605933	Moin M., Bakshi A., Saha A., Dutta M., Sheshu M Madhav, P B Kirti	Rice Ribosomal Protein Large Subunit Genes and Their Spatio-temporal and Stress Regulation.	Front Plant Sci	7	1284	2016	RPL44,RPL35A.3,_,RPL18A,_,_,RPL30E,RPL36.2,RPL37,_,RPL2,RPL13B,RPL51,_,RPL13A,RPL28,RPL17,RPL19,RPL3B,RPL5,RPL23A,RPL26,RPL29,RPL15,RPL38,RPL26.1,_,RPL31,RPL4,_,_,RPL34,_,RPL21.2	OsRPL44,OsRPL35a.3, RPL35a.3,RPL12, RPL10, OsRPL12, OsRPL10,rpl18a, RPL18a, OsRPL18a,OsRPL27.3, RPL27.3,RPL9, OsRPL9,OsRPL30e, RPL30e,OsRPL36.2,OsRPL37,OsRPL14, RPL14,rpl2, rpl8, RPL8, OsRPL2, OsRPL8,RPL13b, OsRPL13b,OsRPL51,rpL32_9.3, RPL32, OsrpL32_9.3, OsRPL32,OsRPL13a, RPL13a,OsRPL28,RPL22, OsRPL17, OsRPL22,RPL19.3, OsRPL19.3, OsRPL19, RPL19e, OsRPL19e,OsRPL3B, RPL3, OsRPL3,rpl5, RL5, RPL18p/L5e, RPL18p, RPL5e, OsRPL5, OsRPL5e, OsRPL18p,OsRPL23A,RPL24b, OsRPL26, OsRPL24b,OsRPL29,OsRPL15,OsRPL38,OsRPL26.1,BIP123, RPL24a, OsRPL24a,OsRPL31,OsRPL4,OsRPL5, RPL5,OsRPL7/L12, RPL7/L12, RPL7, RPL12, OsRPL7, OsRPL12,OsRPL34,OsRPL6, RPL6,OsRPL21.2
45445	0	Luo J., Zhang H., He W., Zhang Y., Cao W., Zhang H., Bao Y.	OsSNAP32, a SNAP25-type SNARE protein-encoding gene from rice, enhanced resistance to blast fungus	Plant Growth Regul.	80(1)	37-45	2016	_	OsSNAP32, SNAP32
45446	0	Nakamura J., Yuasa T., Tran Thi Huong, Harano K., Tanaka S., Iwata T., Phan T., Iwaya M.	Rice homologs of inducer of CBF expression (OsICE) are involved in cold acclimation	Plant Biotechnology	28(3)	303-309	2011	HSFA3,_,_,DREB1B,TPP1	HSfA3, OsHsfA3, OsHsf-07, HSF07,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsTPP1, OsTPS
45447	0	Sabhavat Bhaskar Naik, Dhanasekar DivyaNihar Sahu, Raman Meenakshi Sundaram, Preetinder Singh Sarao	A new gene Bph33(t) conferring resistance to brown planthopper (BPH), Nilaparvata lugens (St?l) in rice line RP2068-18-3-5	Euphytica	214	53	2018	BPH33	OsDjC10, DjC10, Bph33(t), Bph33
45448	27903806	Chen Y., Ma J., Anthony J Miller, Luo B., Wang M., Zhu Z., Pieter B F Ouwerkerk	OsCHX14 is Involved in the K+ Homeostasis in Rice (Oryza sativa) Flowers.	Plant Cell Physiol.	57(7)	1530-1543	2016	_,CHX14,JAR1	OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsCHX14,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
45449	15347787	Sze H., Padmanaban S., Fran?oise Cellier, Honys D., Ning-Hui Cheng, Kevin W Bock, Genevieve Con?j?ro, Li X., Twell D., John M Ward, Kendal D Hirschi	Expression patterns of a novel AtCHX gene family highlight potential roles in osmotic adjustment and K+ homeostasis in pollen development.	Plant Physiol.	136(1)	2532-47	2004	CHX17,CHX7,CHX8,CHX1,CHX13,CHX6,CHX10,CHX14,CHX12,CHX11,CHX9,CHX3,CHX4,CHX15,CHX16,CHX5,CHX2	OsCHX17,OsCHX07, CHX07, OsCHX7,OsCHX08, CHX08, OsCHX8,OsSTA85, STA85, OsCHX01, CHX01, OsCHX1,OsCHX13,OsCHX06, CHX06, OsCHX6,OsCHX10,OsCHX14,OsCHX12,NaT, OsCHX11,OsCHX09, CHX09, OsCHX9,OsSTA234, STA234, OsCHX03, CHX03, OsCHX3,OsSTA291, OsCHX04, CHX04, OsCHX4,OsCHX15,OsCHX16,OsCHX05, CHX05, OsCHX5,OsCHX02, CHX02, OsCHX2
45450	21908474	Shimo H., Ishimaru Y., An G., Yamakawa T., Nakanishi H., Nishizawa N.K.	Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice.	J. Exp. Bot.	62(15)	5727-34	2011	LCD,LEA22,MDR6	OsLCD,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsABCB2, ABCB2, OsPGP2, OsMDR6, OsABCB2_1, OsABCB2_2
45451	28500269	Zhou L.J., Xiao L.T., Xue H.W.	Dynamic Cytology and Transcriptional Regulation of Rice Lamina Joint Development.	Plant Physiol.	174(3)	1728-1746	2017	LC3,LC1	OsLC3,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1
45452	0	Zhang H., Liu L., Cai M., Zhu S., Zhao J., Zheng T., Xu X., Zeng Z., Niu J., Jiang L., Chen S., Wan J.	A Point Mutation of magnesium chelatase OsCHLI Gene Dampens the Interaction Between CHLI and CHLD Subunits in Rice	Plant Mol. Biol. Rep.	33	1975-1987	2015	TRXM1,TRXZ,YGL98,ELL,TRXH10,TRXM2	OsTRXM1,OsPAP10, PAP10, OsPAP10/OsTRXz, OsTRXz, TRXz,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,chlI, OsChlI, ChlI, CHLI, OsCHLI, OsCHLI/ELL ,OsTRXh10, OsTRX2, TRX2, TRXF, OsTRXF,OsTRX m2, TRX m2, OsTRXM2
45453	29653969	Mach J.	So Inclined: Phosphate Status and Leaf Angle in Rice.	Plant Cell	30(4)	743-744	2018	_,_,_,BU1,RLI1	OsbHLH081, bHLH081, OsBC1, BC1,OsSPX1, SPX1,OsSPX2, SPX2,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsRLI1
45454	29716991	Yao L., Cheng X., Gu Z., Huang W., Li S., Wang L., Wang Y.F., Xu P., Ma H., Ge X.	The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.	Plant Cell	30(6)	1258-1276	2018	_,_,_,NCED1,_,NAC6,BZIP46,DCA1,_,_,BZIP72,ABA8OX1	SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsPP2C30, PP2C30, OsPP48, PP48,AWPM-19, PM19, OsPM1, OsPM19L1, PM1, PM19L1, OsAWPM-19, OsPM19,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,OsSRO1c, SRO1c,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsDCA1,OsRZFP34, OsRFP1, RZFP34, RFP1,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9,OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1
45455	29610209	Ruan W., Guo M., Xu L., Wang X., Zhao H., Wang J., Yi K.	An SPX-RLI1 Module Regulates Leaf Inclination in Response to Phosphate Availability in Rice.	Plant Cell	30(4)	853-870	2018	BU1,_,_,RLI1,_	ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsbHLH081, bHLH081, OsBC1, BC1,OsSPX1, SPX1,OsRLI1,OsSPX2, SPX2
45456	29674519	Arthur R.A., Bennetzen J.L.	Discovery of Lineage-Specific Genome Change in Rice Through Analysis of Resequencing Data.	Genetics	209(2)	617-626	2018		
45457	29691314	Lu X., Zhang J., Brown B., Li R., Rodr?guez-Romero J., Berasategui A., Liu B., Xu M., Luo D., Pan Z., Baerson S.R., Gershenzon J., Li Z., Sesma A., Yang B., Peters R.J.	Inferring Roles in Defense from Metabolic Allocation of Rice Diterpenoids.	Plant Cell	30(5)	1119-1131	2018	CPS2,CPS4	OsCPS2, cps2, OsCPS2ent, CYC2, OsCyc2, OsCYC2, OsCPSL1, cpsl1, OsCyc2/OsCPS2, OsTPS7, Os-CPS2,OsCPS4, CYC1, OsCYC1, OsCyc1, cpsl3, OsCPSL3, OsCPSsyn, OsCyc1/OsCPS4, OsTPS15, Os-CPS4
45458	29695866	Wang W., Mauleon R., Hu Z., Chebotarov D., Tai S., Wu Z., Li M., Zheng T., Fuentes R.R., Zhang F., Mansueto L., Copetti D., Sanciangco M., Palis K.C., Xu J., Sun C., Fu B., Zhang H., Gao Y., Zhao X., Shen F., Cui X., Yu H., Li Z., Chen M., Detras J., Zhou Y., Zhang X., Zhao Y., Kudrna D., Wang C., Li R., Jia B., Lu J., He X., Dong Z., Xu J., Li Y., Wang M., Shi J., Li J., Zhang D., Lee S., Hu W., Poliakov A., Dubchak I., Ulat V.J., Borja F.N., Mendoza J.R., Ali J., Li J., Gao Q., Niu Y., Yue Z., Naredo M.E.B., Talag J., Wang X., Li J., Fang X., Yin Y., Glaszmann J.C., Zhang J., Li J., Hamilton R.S., Wing R.A., Ruan J., Zhang G., Wei C., Alexandrov N., McNally K.L., Li Z., Leung H.	Genomic variation in 3,010 diverse accessions of Asian cultivated rice.	Nature	557(7703)	43-49	2018	qSH1,C,BH4,SH4,LK3,WX1,PROG1,qSW5,RC	qSH1, qsh1, qSH-1,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,Bh4, OsATL14, ATL14,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,OsPROG1,GW5, OsGW5,Rc, OsbHLH017, OsbHLH17, SD7-1, qSD7-1/qPC7, OsGL3C, GL3C
45459	29588389	Guo T., Chen K., Dong N.Q., Shi C.L., Ye W.W., Gao J.P., Shan J.X., Lin H.X.	<i>GRAIN SIZE.AND NUMBER1</i> Negatively Regulates the OsMKKK10-OsMKK4-OsMPK6 Cascade to Coordinate the Trade-off between grain number per Panicle and GRAIN SIZE.in Rice.	Plant Cell	30(4)	871-888	2018	_,GSN1,SMG1	YDA1, OsMKKK10, MKKK10,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1
45460	29632179	Chen H., Ma B., Zhou Y., He S.J., Tang S.Y., Lu X., Xie Q., Chen S.Y., Zhang J.S.	E3 Ubiquitin ligase SOR1 regulates ethylene response in rice root by modulating stability of Aux/IAA protein.	Proc. Natl. Acad. Sci. U.S.A.	115(17)	4513-4518	2018	EIN2,IAA26,IAA20,_,IAA9,_,SOR1	OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsIAA26,OsIAA20,OsAFB2, ABF2, OsAFB2-1, OsAFB2-2, OsFbox206, Os_F0492,OsIAA9, OsIAA2,OsTIR1, TIR1, OsFbox248, Os_F0717,MHZ2, OsMHZ2, OsSOR1
45461	29610210	Heng Y., Wu C., Long Y., Luo S., Ma J., Chen J., Liu J., Zhang H., Ren Y., Wang M., Tan J., Zhu S., Wang J., Lei C., Zhang X., Guo X., Wang H., Cheng Z., Wan J.	OsALMT7 Maintains Panicle Size and grain yield in Rice by Mediating Malate Transport.	Plant Cell	30(4)	889-906	2018	_,_	OsVPE3, VPE3, REP-2, REP-2alpha, REP-2beta, OsaLeg2, aLeg2,OsVPE2, VPE2, OsaLeg1, aLeg1
45462	29523686	Hamiaux C., Drummond R.S.M., Luo Z., Lee H.W., Sharma P., Janssen B.J., Perry N.B., Denny W.A., Snowden K.C.	Inhibition of strigolactone receptors by <i>N</i>-phenylanthranilic acid derivatives: Structural and functional insights.	J. Biol. Chem.	293(17)	6530-6543	2018	D14	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4
45463	29562302	Shao J.F., Xia J., Yamaji N., Shen R.F., Ma J.F.	Effective reduction of cadmium accumulation in rice grain by expressing OsHMA3 under the control of the OsHMA2 promoter.	J. Exp. Bot.	69(10)	2743-2752	2018	ZIP5,HMA2,GCC7	OsZIP5, OsZIP8, ZIP8, OsZIP9,OsHMA2, osHMA2, OsHMA2v ,HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3
45464	29735369	Abe K., Araki E., Suzuki Y., Toki S., Saika H.	Production of high oleic/low linoleic rice by genome editing.	Plant Physiol. Biochem.	131	58-62	2018		
45465	29576481	Fan J., Bai P., Ning Y., Wang J., Shi X., Xiong Y., Zhang K., He F., Zhang C., Wang R., Meng X., Zhou J., Wang M., Shirsekar G., Park C.H., Bellizzi M., Liu W., Jeon J.S., Xia Y., Shan L., Wang G.L.	The Monocot-Specific Receptor-like Kinase SDS2 Controls Cell Death and Immunity in Rice.	Cell Host Microbe	23(4)	498-510.e5	2018	RBOHB,RLCK176,SDS2,PAL1,PR5,SPL11,RLCK118	rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,OsRLCK176,OsSDS2,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsPR5, Pir2, PR-5, PR5-1,spl11, spl11*, OsPUB11, PUB11,OsRLCK118
45466	29509987	Chen X., Chen H., Yuan J.S., K?llner TG., Chen Y., Guo Y., Zhuang X., Chen X., Zhang Y.J., Fu J., Nebenf?hr A., Guo Z., Chen F.	The rice terpene synthase gene OsTPS19 functions as an (S)-limonene synthase in planta, and its overexpression leads to enhanced resistance to the blast fungus Magnaporthe oryzae.	Plant Biotechnol. J.	16(10)	1778-1787	2018	_,_	OsTPS20, TPS20,OsTPS19, TPS19
45467	29651780	Chu T.T.H., Hoang T.G., Trinh D.C., Bureau C., Meynard D., Vernet A., Ingouff M., Do N.V., P?rin C., Guiderdoni E., Gantet P., Maurel C., Luu D.T.	Sub-cellular markers highlight intracellular dynamics of membrane proteins in response to abiotic treatments in rice.	Rice (N Y)	11(1)	23	2018	PIP2;5,TIP1;1,TIP2;2,GLUP4,SCAMP1,_,PIP1A,PIP2;4	OsPIP2;5, PIP2-5,OsTIP1;1, TIP1-1, rTIP1,OsTIP2;2, TIP2-2,glup4(esp8), esp8, glup4, OsRab5B2, Rab5a, OsRab5a, gpa1, GPA1/Rab5a, GPA, GLUP4/Rab5, GLUP4/Rab5a,Scamp1, OsSCAMP1,OsGAP1, GAP1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsPIP2;4, PIP2.4, PIP2-4, OsPIP2-4
45468	29663070	Zhu C.Q., Zhu X.F., Wang C., Dong X.Y., Shen R.F.	Nitrate inhibits the remobilization of cell wall phosphorus under phosphorus-starvation conditions in rice (Oryza sativa).	Planta	248(1)	185-196	2018	_,_,_,PI1,_,IPS1	OsSPX3, SPX3,OsSPX5, SPX5,OsSPX2, SPX2,OsIPS2, IPS2, OsPI1,OsSPX1, SPX1,OsIPS1, IPS1
45469	29684657	Wang C., Guo W., Cai X., Li R., Ow D.W.	Engineering low-cadmium rice through stress-inducible expression of OXS3-family member genes.	N Biotechnol	48	29-34	2019	O3L2,O3L3	OsO3L2,OsO3L3
45470	29495079	Ye N.H., Wang F.Z., Shi L., Chen M.X., Cao Y.Y., Zhu F.Y., Wu Y.Z., Xie L.J., Liu T.Y., Su Z.Z., Xiao S., Zhang H., Yang J., Gu H.Y., Hou X.X., Hu Q.J., Yi H.J., Zhu C.X., Zhang J., Liu Y.G.	Natural variation in the promoter of rice calcineurin B-like protein10 (OsCBL10) affects flooding tolerance during seed germination among rice subspecies.	Plant J.	94(4)	612-625	2018	CIPK30,PK4,AMY3D,CIPK20,CIPK05,TPP4,CIPK15,CIPK01,CIPK08,TPP8,TPP1,CBL10	OsCIPK30,OsCIPK19, OsPK4, OsPK04, Os-CIPK19, CIPK19,Amy3D/E*(RAmy3D/E), alpha Amy3, AmyII-4, AMY1.3, Amy3D, Amy3D/E*, RAmy3D/E, Amy3D_E, Amy8, aAmy3, RAmy3D, OsAmy3D, alphaAmy3,OsCIPK20,OsCIPK05, CIPK5, OsCIPK5, OsSTA7,OsTPP4, OsTPP7,OsCIPK15,OsCIPK01, CIPK1, OsCIPK1,OsCIPK08, CIPK8, OsCIPK8,OsTPP8, OsTPP2,OsTPP1, OsTPS,OsCBL10
45471	29692796	Zhang Y., Li S., Xue S., Yang S., Huang J., Wang L.	Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice <i>ERECTA</i> Genes.	Front Plant Sci	9	473	2018	RLCK204,RLCK85,SIK1	OsRLCK204, OsER1, ER1,OsRLCK85, OsER2, ER2,OsSIK1, OsER2, ER2, OsERL, ERL
45472	29720986	Lee D.K., Redillas MCFR., Jung H., Choi S., Kim Y.S., Kim J.K.	A Nitrogen Molecular Sensing System, Comprised of the <i>ALLANTOINASE</i> and <i>UREIDE PERMEASE 1</i> Genes, Can Be Used to Monitor N Status in Rice.	Front Plant Sci	9	444	2018	AAH,UPS1,ALN	OsAAH,OsUPS1,OsALN
45473	29436485	Yokoo S., Inoue S., Suzuki N., Amakawa N., Matsui H., Nakagami H., Takahashi A., Arai R., Katou S.	Comparative analysis of plant isochorismate synthases reveals structural mechanisms underlying their distinct biochemical properties.	Biosci. Rep.	38(2)		2018	_	ICS1, OsICS1, OsICS, ICS
45474	29513388	Shinya T., Yasuda S., Hyodo K., Tani R., Hojo Y., Fujiwara Y., Hiruma K., Ishizaki T., Fujita Y., Saijo Y., Galis I.	Integration of danger peptide signals with herbivore-associated molecular pattern signaling amplifies anti-herbivore defense responses in rice.	Plant J.	94(4)	626-637	2018	DPF,KS4,PEPR2,PEP1,PEP3,PEP6,PEP5,PEPR1,PEP2,PEP4,_	OsbHLH025, bHLH025, bHLH25,OsKS4, KS4, KSL4, OsKSL4, DTS2, OsDTS2, OsTPS16, TPS16,OsPEPR2,OsPep1, Pep1, OsPROPEP1, PROPEP1,OsPep3, Pep3, OsPROPEP3, PROPEP3,OsPep6, Pep6, OsPROPEP6, PROPEP6,OsPep5, Pep5, OsPROPEP5, PROPEP5,OsPEPR1,OsPep2, Pep2, OsPROPEP2, PROPEP2,OsPep4, Pep4, OsPROPEP4, PROPEP4,OsAT4c, AT4c
45475	29702261	Xu R., Duan P., Yu H., Zhou Z., Zhang B., Wang R., Li J., Zhang G., Zhuang S., Lyu J., Li N., Chai T., Tian Z., Yao S., Li Y.	Control of grain size.and Weight by the OsMKKK10-OsMKK4-OsMAPK6 Signaling Pathway in Rice.	Mol Plant	11(6)	860-873	2018		
45476	29702186	Li H., Liu C., Zhou L., Zhao Z., Li Y., Qu M., Huang K., Zhang L., Lu Y., Cao M., Gao S., Zhang S.	Molecular and functional characterization of the magnesium transporter gene ZmMGT12 in maize.	Gene	665	167-173	2018		
45477	29514259	E Z., Li T., Zhang H., Liu Z., Deng H., Sharma S., Wei X., Wang L., Niu B., Chen C.	A group of Nuclear factor Y transcription factors are sub-functionalized during endosperm development in monocots.	J. Exp. Bot.	69(10)	2495-2510	2018	HAP3K,HAP3D,HAP3E,HAP5K,HAP5I,HAP2I,ERF114,HAP5L,HAP5J,HAP5H,ERF115	OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41,OsHAP3D, OsEnS-83, OsNF-YB9, NF-YB9, NFYB9,OsHAP3E, OsLEC1/OsHAP3E, OsLEC1, OsNF-YB7, NF-YB7, NFYB7, L1L ,OsHAP5K, OsNF-YC11, NF-YC11, OsNF-YC12, NF-YC12, NFYC12,OsEnS-5, OsHAP5I, OsNF-YC10, NF-YC10, NFYC10,OsHAP2I, NF-YA, CBF-B, NF-YA8, OsNF-YA8, OsEnS-136, NFYA8,OsERF#114, OsERF114,OsEnS-133, OsHAP5L, OsNF-YC12, NF-YC12, OsNF-YC11, NF-YC11, NFYC11,OsHAP5J, OsNF-YC8, NF-YC8, NFYC8,OsHAP5H, OsNF-YC9, NF-YC9, NFYC9,OsERF#115, OsERF115, AP2/EREBP#110, AP2/EREBP110, OsEnS-123
45478	29650967	Giri J., Bhosale R., Huang G., Pandey B.K., Parker H., Zappala S., Yang J., Dievart A., Bureau C., Ljung K., Price A., Rose T., Larrieu A., Mairhofer S., Sturrock C.J., White P., Dupuy L., Hawkesford M., Perin C., Liang W., Peret B., Hodgman C.T., Lynch J., Wissuwa M., Zhang D., Pridmore T., Mooney S.J., Guiderdoni E., Swarup R., Bennett M.J.	Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Nat Commun	9(1)	1408	2018	_	OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1
45479	29696032	Hao X., Zeng M., Wang J., Zeng Z., Dai J., Xie Z., Yang Y., Tian L., Chen L., Li D.	A Node-Expressed Transporter OsCCX2 Is Involved in Grain Cadmium Accumulation of Rice.	Front Plant Sci	9	476	2018	CDT1	OsCDT1, OsCCX2, CCX2, OsNCX8, NCX8
45480	29383786	Gong R., Cao H., Zhang J., Xie K., Wang D., Yu S.	Divergent functions of the GAGA-binding transcription factor family in rice.	Plant J.	94(1)	32-47	2018	GS2,EF1,WFP,_,_,TID1,_,GW2,D11,BC12,SRS3,RFT1,LFL1,_,HD3A,HD5,GS5	OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,OsGBP1, GBP1,OsBBR, BBR, OsGBP4, GBP4,OsTID1, TubA2, SRS5, OS-TubA2, OsSRS5, ,OsGBP3, GBP3,OsGW2,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12,OsSRS3, SAR1, OsSAR1,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsLFL1, OsSTA29, STA29,OsGBP2, GBP2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsSCP26, SCP26, OsGS5
45481	29611871	Jiang P., Wang S., Zheng H., Li H., Zhang F., Su Y., Xu Z., Lin H., Qian Q., Ding Y.	SIP1 participates in regulation of flowering time in rice by recruiting OsTrx1 to Ehd1.	New Phytol.	219(1)	422-435	2018	MADS51,_,HD3A,EF1,GHD7,SIP1,RFT1	OsMADS51, OsMADS65, MADS65,OsSET33, SET33, OsSDG723, SDG723, OsTrx1, Trx1, OsTrx1/SDG723 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsSIP1,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
45482	29617374	Dong H., Zhao H., Li S., Han Z., Hu G., Liu C., Yang G., Wang G., Xie W., Xing Y.	Genome-wide association studies reveal that members of bHLH subfamily 16 share a conserved function in regulating flag leaf angle in rice (Oryza sativa).	PLoS Genet.	14(4)	e1007323	2018	D61,ILI3,_,ILI7	d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsILI3, OsbHLH153, bHLH153, OsBUL2, BUL2,OsBUL3, BUL3, OsbHLH174, bHLH174 ,OsILI7, OsbHLH173, bHLH173
45483	29655221	Aung M.S., Kobayashi T., Masuda H., Nishizawa N.K.	Rice HRZ ubiquitin ligases are crucial for response to excess iron.	Physiol Plant			2018	IRT1,YSL2,_,TIFY11C,_,YSL15,_,LOX8,_,NAS2,TOM1,NAS1	OsIRT1,OsYSL2, Os-YSL2, OsYs6 ,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsRFPH2-24, OsHRZ2, HRZ2,OsYSL15, OsYs7,OsHRZ1, HRZ1,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsNAS2,OsTOM1, ZIFL4, OsZIFL4 ,OsNAS1
45484	29619515	Tan J., Wang M., Shi Z., Miao X.	OsEXPA10 mediates the balance between growth and resistance to biotic stress in rice.	Plant Cell Rep.	37(7)	993-1002	2018	EXPA10	OsEXPA10, OsEXP10, osaEXPa1.28
45485	29670011	Sim J.S., Kesawat M.S., Kumar M., Kim S.Y., Mani V., Subramanian P., Park S., Lee C.M., Kim S.R., Hahn B.S.	Lack of the alpha1,3-Fucosyltransferase Gene (<i>OsFucT</i>) Affects Anther Development and pollen Viability in Rice.	Int J Mol Sci	19(4)		2018	WAK101,_,EIF4A2,_,RPBF,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsWAK101, OsRLCK292, RLCK292,,eIF-4a, EIF4A, OseIF4A, eIF4A2, eIF4A-3, OsRH23,,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,KIF19, OsKIF19,,,,,,,,,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,,,OsFbox412, Fbox412, Os_F0356,OsFUT11, FUT11, FucTA, OsFucT,,,,,,,,,,,,
45486	29784797	Miao C., Xiao L., Hua K., Zou C., Zhao Y., Bressan R.A., Zhu J.K.	Mutations in a subfamily of abscisic acid receptor genes promote rice growth and productivity.	Proc. Natl. Acad. Sci. U.S.A.	115(23)	6058-6063	2018	_,_,_,_,_,_,_,_,_,_,_,_,_	OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsPYL/RCAR6, PYL6, OsPYL6, OsPYL5, PYL5,OsEnS-89, OsPYL13, PYL13,OsPYL/RCAR9, PYL9, OsPYL9, OsPYL2, PYL2,OsPYL12, PYL12, OsPYL11, PYL11,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4,OsPYL/RCAR8, PYL8, OsPYL8, OsPYL9, PYL9, CAPIP1,OsPYL/RCAR2, PYL2, OsPYL2, OsPYL3, PYL3,OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 ,OsPYL/RCAR10, PYL10, OsPYL10, OsPYL1, PYL1,OsPYL7, PYL7, OsPYL12,OsPYL/RCAR7, PYL7, OsPYL7, OsPYL8, PYL8, OsEnS-90,OsPYL/RCAR5, PYL5, OsPYL5, OsPYL11, PYL11
45487	29760062		Correction for Ishikawa et al., Ion-beam irradiation, gene identification, and marker-assisted breeding in the development of low-cadmium rice.	Proc. Natl. Acad. Sci. U.S.A.	115(21)	E4950-E4951	2018		
45488	29802991	Bhattarai U., Subudhi P.K.	Genetic analysis of yield and agronomic traits under reproductive-stage drought stress in rice using a high-resolution linkage map.	Gene	669	69-76	2018		
45489	29581216	Zhou Y.B., Liu C., Tang D.Y., Yan L., Wang D., Yang Y.Z., Gui J.S., Zhao X.Y., Li L.G., Tang X.D., Yu F., Li J.L., Liu L.L., Zhu Y.H., Lin J.Z., Liu X.M.	The Receptor-Like Cytoplasmic Kinase STRK1 Phosphorylates and Activates CatC, Thereby Regulating H2O2 Homeostasis and Improving salt tolerance in Rice.	Plant Cell	30(5)	1100-1118	2018	_,CATC,_,RLCK199,CATA,CATB,RLCK284,RLCK154,RLCK25	RLK,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,RLK,OsRLCK199,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsRLCK284,OsRLCK154, STRK1, OsSTRK1,OsRLCK25
45490	29757631	Attanayake G., Walter T., Walker K.D.	Understanding Which Residues of the Active Site and Loop Structure of a tyrosine aminomutase Define Its Mutase and Lyase Activities.	Biochemistry	57(25)	3503-3514	2018		
45491	29717020	Tao J., Liang W., An G., Zhang D.	<i>OsMADS6</i> Controls Flower Development by Activating Rice <i>FACTOR OF DNA METHYLATION LIKE1</i>.	Plant Physiol.	177(2)	713-727	2018	MFO1,_,_,_,_	OsMADS6, MADS6, OsMFO1,OsFDML4, FDML4,OsFDML1, FDML1,OsFDML2, FDML2,X1, OsFDML3, FDML3
45492	29868050	Yoo Y., Park J.C., Cho M.H., Yang J., Kim C.Y., Jung K.H., Jeon J.S., An G., Lee S.W.	Lack of a Cytoplasmic RLK, Required for ROS Homeostasis, Induces Strong Resistance to Bacterial Leaf Blight in Rice.	Front Plant Sci	9	577	2018	RBBI3-1,LOX11,RLCK2,PR1B,_,POX22.3,PEX11-1,PR1A,SOD2,AAO2,CATA	RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4,OsLOX11, OsRCI-1, RCI-1, OsBphi262, OsLOX12, OsLOX2.2, LOX2.2,OsRLCK2, rrsRLK,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,EIP8, OsVOZ1, VOZ1 ,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsPEX11-1, OsPEX11,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn,OsAAO2, L-APX,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
45493	29868104	Zheng X., Yang L., Li Q., Ji L., Tang A., Zang L., Deng K., Zhou J., Zhang Y.	MIGS as a Simple and Efficient Method for Gene Silencing in Rice.	Front Plant Sci	9	662	2018		
45494	29774038	Liu J., Xu M., Estavillo G.M., Delhaize E., White R.G., Zhou M., Ryan P.R.	Altered Expression of the Malate-Permeable Anion Channel OsALMT4 Reduces the Growth of Rice Under Low Radiance.	Front Plant Sci	9	542	2018	ALMT4	OsALMT4
45495	29720556	Yang X., Li G., Tian Y., Song Y., Liang W., Zhang D.	A Rice glutamyl-tRNA synthetase Modulates Early Anther Cell Division and Patterning.	Plant Physiol.	177(2)	728-744	2018	_,ERS2,CDKB2;1 ,ERS3,ERS1 ,ARC	H4,OsERS2,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,OsERS3,OsERS1 ,OsARC
45496	29851259	Yang J., Cho L.H., Yoon J., Yoon H., Wai A.H., Hong W.J., Han M., Sakakibara H., Liang W., Jung K.H., Jeon J.S., Koh H.J., Zhang D., An G.	Chromatin interacting factor OsVIL2 increases biomass and rice grain yield.	Plant Biotechnol. J.			2018	GN1A,LC2,EMF2B,CKX4	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsLC2, OsVIL2, VIL2, OsVIL3,OsEMF2b, EMF2b,OsCKX4, ckx4, OsSCRM, OsSCRM2, SCRM, SCRM2
45497	30080644	Singh G., Sarkar N.K., Grover A.	Mapping of domains of heat stress transcription factor OsHsfA6a responsible for its transactivation activity.	Plant Sci.	274	80-90	2018		
45498	29562289	Xiao H., Xu Y., Ni C., Zhang Q., Zhong F., Huang J., Liu W., Peng L., Zhu Y., Hu J.	A rice dual-localized pentatricopeptide repeat protein is involved in organellar RNA editing together with OsMORFs.	J. Exp. Bot.	69(12)	2923-2936	2018	NDHD,PGL1,MORF3,MORF1,WSP1,MORF9,_,_,ST1,CAB1R,RBCL,_,YGL1,PSAA,RBCS,_,PSBA,RPOTP,RPOB,RPOA,_,MORF8,MORF2	ndhD, NdhD, NDH4, NADH4,OsPGL1,OsMORF3,OsMORF1,,OsMORF9,atpA,MORF8-like,st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,rbcL, rbcA, OsrbcL,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,OsYGL1, CHLG, Ygl1, CS, OsCHLG,PsaA, psaA, PsAA1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,petB,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,OsRpo Tp, OsRpoTp, NEP, RpoTp,rpoB, RpoB, Rpobeta,rope, rpoalpha, Rpoalpha, rope, RpoA ,ccmFc, ccmFc-1,OsMORF8,OsMORF2
45499	30080641	Ma G., Li J., Li J., Li Y., Gu D., Chen C., Cui J., Chen X., Zhang W.	OsMTP11, a trans-Golgi network localized transporter, is involved in manganese tolerance in rice.	Plant Sci.	274	59-69	2018		
45500	29749629	Sun S.K., Chen Y., Che J., Konishi N., Tang Z., Miller A.J., Ma J.F., Zhao F.J.	Decreasing arsenic accumulation in rice by overexpressing OsNIP1;1 and OsNIP3;3 through disrupting arsenite radial transport in roots.	New Phytol.	219(2)	641-653	2018	LSI1,NIP1;1,NIP3;3	lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsNIP1;1, NIP1-1, rMIP1, MIP1, OsNIP1.1, NIP1.1,OsNIP3;3, NIP3-3, OsNIP3.3, NIP3.3
45501	29788450	Guo F., Zhang H., Liu W., Hu X., Han N., Qian Q., Xu L., Bian H.	Callus initiation from root explants employs different strategies in rice and Arabidopsis.	Plant Cell Physiol.			2018	IAA11,QHB,WOX11	OsIAA11,OsWOX9, WOX9, WOX5, Os WOX5, OsWOX5, QHB/OsWOX9,OsWOX11, Os WOX11, OsWOX12A
45502	29744685	Ohashi M., Ishiyama K., Kojima S., Konishi N., Sasaki K., Miyao M., Hayakawa T., Yamaya T.	Outgrowth of Rice Tillers Requires Availability of Glutamine in the Basal Portions of Shoots.	Rice (N Y)	11(1)	31	2018	ASN1,GLN1;2,ASN	OsASN1, OsAS1, AS1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsASN2, OsAS, OsAS2, AS2
45503	29524649	Xie Y., Zhang Y., Han J., Luo J., Li G., Huang J., Wu H., Tian Q., Zhu Q., Chen Y., Kawano Y., Liu Y.G., Chen L.	The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in?Rice.	Mol Plant	11(5)	720-735	2018	EUI1,GD1,GA2OX1,SD1,D18,HDAC2,_,SAP18	eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,OsVAL1, VAL1,OsGA2ox1, ga2ox-1, OsGA2ox-1, ga2ox, ga2ox 1, GA2ox1,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,d18-h  (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, OsGA3ox-2, GA3ox-2, GA3ox1,OsHDAC2, HDA710, OsHDA710 ,OsVAL2, VAL2,OsSAP18
45504	29951522	Jin Y.M., Piao R., Yan Y.F., Chen M., Wang L., He H., Liu X., Gao X.A., Jiang W., Lin X.F.	Overexpression of a New Zinc Finger Protein Transcription Factor <i>OsCTZFP8</i> Improves cold tolerance in Rice.	International Journal of Genomics	2018	5480617	2018	CTZFP8	OsCTZFP8
45505	29775494	Wang Z., Xia Y., Lin S., Wang Y., Guo B., Song X., Ding S., Zheng L., Feng R., Chen S., Bao Y., Sheng C., Zhang X., Wu J., Niu D., Jin H., Zhao H.	osa-miR164a targets OsNAC60 and negatively regulates rice immunity against the blast fungus Magnaporthe oryzae.	Plant J.			2018	Y37,MIR398B,MIR169H,MIR172A,PR10A,MIR1863,NAC60,MIR394,MIR162A,MIR169,MIR1320,MIR5153,NH1,MIR164A,MIR167H	NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1,miR398b, osa-miR398b, osa-MIR398b,miR169h, osa-miR169h, osa-MIR169h,OsmiR172a, miR172a, osa-MIR172a, Osa-miR172a ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,miR1863, osa-miR1863, osa-MIR1863, osa-MIR1863a, osa-miR1863a,ONAC060, ONAC60, OMTN3, OsNAC60,OsmiR394, miR394, osa-MIR394,miR162a, osa-miR162a, osa-MIR162a,miR169, osa-miR169, osa-MIR169a, miR169a, osa-miR169a,miR1320, osa-miR1320, osa-MIR1320osa-miR1320-3p osa-miR1320-5p,miR5153, osa-miR5153, osa-MIR5153, MIR5153-3p,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,miR164a, osa-miR164a,miR167h, osa-miR167h, osa-MIR167hosa-miR167h-3p osa-miR167h-5p
45506	29567449	Hu Z., Lu S.J., Wang M.J., He H., Sun L., Wang H., Liu X.H., Jiang L., Sun J.L., Xin X., Kong W., Chu C., Xue H.W., Yang J., Luo X., Liu J.X.	A Novel QTL qTGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate grain size and Weight in Rice.	Mol Plant	11(5)	736-749	2018	IAA21,IAA23,_,_,IAA27,IAA30,ARF2,IAA17,IAA8	OsIAA21,OsIAA23,GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, TGW3, OsGSK5/OsSK41, OsSK41/OsGSK5,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsIAA27,OsIAA30,OsARF2, OsARF4, ARF4,OsIAA17,OsIAA8
45507	29648614	Wang Z., Wan L., Xin Q., Chen Y., Zhang X., Dong F., Hong D., Yang G.	Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms.	J. Exp. Bot.	69(12)	3141-3155	2018	PGIP2	Ospgip2, pgip2, OsPGIP2
45508	29574592	Lenka S.K., Muthusamy S.K., Chinnusamy V., Bansal K.C.	Ectopic Expression of Rice PYL3 Enhances Cold and Drought Tolerance in Arabidopsis thaliana.	Mol. Biotechnol.	60(5)	350-361	2018	_	OsPYL/RCAR3, PYL3, OsPYL3, OsPYL10, PYL10, OsRCAR1, RCAR1 
45509	29774039	Guo S., Dai S., Singh P.K., Wang H., Wang Y., Tan J.L.H., Wee W., Ito T.	A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in <i>Oryza sativa</i>.	Front Plant Sci	9	555	2018	NAC40,EF1,HD3A,RFT1	ONAC040, ONAC40, ONAC054, ONAC54, OsNTL5, NTL5,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1
45510	29776748	Monaghan J.	Conserved Degradation of Orthologous RLCKs Regulates Immune Homeostasis.	Trends Plant Sci.	23(7)	554-557	2018	RLCK176,CDPK4,CDPK18,MSRMK2	OsRLCK176,OsCDPK4, OsCPK4, CPK4, CDPK1,OsCDPK18, OsCPK18, CDPK5, OsCDPK5, CPK18,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3
45511	29851294	Sengupta S., Mangu V., Sanchez L., Bedre R., Joshi R., Rajasekaran K., Baisakh N.	An actin-depolymerizing factor from the halophyte smooth cordgrass, Spartina alterniflora (SaADF2), is superior to its rice homolog (OsADF2) in conferring drought and salt tolerance when constitutively overexpressed in rice.	Plant Biotechnol. J.			2018	RLCK319,ADF2,_,CDPK6,ACP	OsRLCK319, OsCRLK21, CRLK21,OsADF,OsWD40-1, WD40-1, OsWD40, WD40,OsCDPK6, OsCPK6,OsACP
45512	29855737	Ye Y., Wu K., Chen J., Liu Q., Wu Y., Liu B., Fu X.	OsSND2, a NAC family transcription factor, is involved in secondary cell wall biosynthesis through regulating MYBs expression in rice.	Rice (N Y)	11(1)	36	2018	_,_,_,CESA7,BC7,_,BC6,NAC62	OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63,R2R3-MYB, OsMYB55/61-L,  MYB55/61-L,  OsMYB55,  OsMYB61-L, MYB55,  MYB61-L, OsMYB61L, MYB61L,OsMYB86L, MYB86L,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17,OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,ONAC062, ONAC62, OsSND2, SND2
45513	29528490	Xue Z., Tan Z., Huang A., Zhou Y., Sun J., Wang X., Thimmappa R.B., Stephenson M.J., Osbourn A., Qi X.	Identification of key amino acid residues determining product specificity of 2,3-oxidosqualene cyclase in Oryza species.	New Phytol.	218(3)	1076-1088	2018	_	OsOSC7, OSC7, OsPS, PS, OsOSC7/OsPS, OsOSC7i, OsOSC7j 
45514	29794169	Tan F., Lu Y., Jiang W., Wu T., Zhang R., Zhao Y., Zhou D.X.	DDM1 Represses Noncoding RNA Expression and RNA-Directed DNA Methylation in Heterochromatin.	Plant Physiol.	177(3)	1187-1197	2018	_,CRR1,DRM2,_	OsDDM1a, DDM1a,,OsDRM2, osdrm2, DRM2-1,OsDDM1b, DDM1b, DDM1
45515	29785454	Lin K.F., Tsai M.Y., Lu C.A., Wu S.J., Yeh C.H.	The roles of Arabidopsis HSFA2, HSFA4a, and HSFA7a in the heat shock response and cytosolic protein response.	Botanical Studies	59(1)	15	2018		
45516	29436050	Mao C., Ding J., Zhang B., Xi D., Ming F.	OsNAC2 positively affects salt-induced cell death and binds to the OsAP37 and OsCOX11 promoters.	Plant J.	94(3)	454-468	2018	WRKY46,_,_,GORK ,NAC2,ACO3,AP37 ,_,LEA3-1,_,SAP11,WRKY43,RAC6,_,SKOR ,CDPK4,ERF127	OsWRKY46, WRKY91, OsWRKY91,OsCOX11, COX11,OsMYB91, MYB91, OsRS2, RS2,OsGORK, OsK5.2, K5.2,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,OsACO3,OsAP37,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsDOG, OsSAP11, DOG,OsWRKY43,OsRacB, RacB, OsRac6,OsCCD1, CCD1 ,OsSKOR, OsK5.1, K5.1,OsCDPK4, OsCPK4, CPK4, CDPK1,OsWR3, WR3, OsERF#127, OsERF127, AP2/EREBP#023, AP2/EREBP23
45517	29847205	Kusajima M., Shima S., Fujita M., Minamisawa K., Che F.S., Yamakawa H., Nakashita H.	Involvement of ethylene signaling in Azospirillum sp. B510-induced disease resistance in rice.	Biosci. Biotechnol. Biochem.	82(9)	1522-1526	2018		
45518	29781573	Bang S.W., Lee D.K., Jung H., Chung P.J., Kim Y.S., Choi Y.D., Suh J.W., Kim J.K.	Overexpression of OsTF1L, a rice HD-Zip transcription factor, promotes lignin biosynthesis and stomatal closure that improves drought tolerance.	Plant Biotechnol. J.			2018	NAC22,COMTL5,TF1L,PME2,_,POXN,_,_,DHHC4,WSI18,PME6,_,FC1,CASPL5B1,_,_,ABCG5,AP2/EREBP52,NHX4,_,HSP70,_,ERF101,CAD6,ACA1	ONAC022, ONAC22,OsCOMTL5,OsTF1L,OsPME2,,poxN, prx38, prxRPN, RPN, poxN/PRX38,OsGLR1.3, GLR1.3, OsGLR1.1, GLR1.1,CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3,OsDHHC4,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,OsPME6, OsPME1,prx22, OsPRX22,OsCAD7, fc1, CAD7,OsCASPL5B1,PMEI,,OsABCG5,AP2/EREBP#052, ERF52,OsNHX4,PRX2, OsPRX2,OsHSP70, OsEnS-45, EnS-45,CYP450,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,OsCAD6,osACA1, OsACA1, OsACA3, OsPM3ATP2
45519	29752473	Soda N., Gupta B.K., Anwar K., Sharan A., Govindjee, Singla-Pareek SL., Pareek A.	Publisher Correction: Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Sci Rep	8(1)	7621	2018		
45520	29717128	Giri J., Bhosale R., Huang G., Pandey B.K., Parker H., Zappala S., Yang J., Dievart A., Bureau C., Ljung K., Price A., Rose T., Larrieu A., Mairhofer S., Sturrock C.J., White P., Dupuy L., Hawkesford M., Perin C., Liang W., Peret B., Hodgman C.T., Lynch J., Wissuwa M., Zhang D., Pridmore T., Mooney S.J., Guiderdoni E., Swarup R., Bennett M.J.	Author Correction: Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate.	Nat Commun	9(1)	1810	2018		
45521	29875491		Whale hunt, saltwater rice and cancer-drug boom.	Nature	558(7708)	10-11	2018		
45522	29915152	Zhang N., Yu H., Yu H., Cai Y., Huang L., Xu C., Xiong G., Meng X., Wang J., Chen H., Liu G., Jing Y., Yuan Y., Liang Y., Li S., Smith S.M., Li J., Wang Y.	A Core Regulatory Pathway Controlling Rice tiller angle Mediated by the <i>LAZY1</i>-Dependent Asymmetric Distribution of Auxin.	Plant Cell	30(7)	1461-1475	2018	YUCCA3,LAZY1,SAUR8,_,_,ARF9,IAA2,_,YUCCA7,IAA25,ALDH3B1    ,WOX6,_,IAA11,MADS57,HSFA2D,IAA20,IAA12,_,SAUR23,ALDH7,ALDH2A,_,SAUR19,ARF7,_,WOX11,IAA9	OsYUCCA3, OsYUC3,lazy1, LA1, OsLazy1,OsSAUR8,OsLAX1, OsRAU1, OsAUX1, LAX1, RAU1, AUX1,EPR1, OsEPR1,OsARF9,OsIAA2,OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3,OsYUCCA7, OsYUC7,OsIAA25,OsALDH3B1    ,OsWOX6, Os WOX6, OsWOX12B,OsNIT1, NIT1,OsIAA11,OsMADS57, MADS-57,HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b ,OsIAA20,OsIAA12,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,OsSAUR23,OsALDH7, osaldh7, LDH, ALDH7B7, OsALDH7B6, ALDH7B6 ,OsALDH2a, ALDH2a, Aldh2a, OsSTA73, OsALDH2B5, ALDH2B5  ,OsARF2, ARF2, OsETT2, ETT2, ARF3a,OsSAUR19,OsARF7,OsLAX4, OsRAU4, OsAUX4, LAX4, RAU4, AUX4,OsWOX11, Os WOX11, OsWOX12A,OsIAA9, OsIAA2
45523	29969697	Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.	Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).	Gene	675	285-300	2018	_,_,_,_,MADS20,_,_,_,_,PLA1,_,_,Hb2,CYP704A5,_,CYP704A3,_,_,_,MADS7,_,MADS32,_,_,MADS24,_,_,_,UBP1-5,_,MADS4,_,_,_,PME8,LHS1,_,PAP2,_,MADS58,FST ,RAG,GE1,CYP714B2,MADS26,MFO1,MADS50,PDC1,_,UBP1-8,_,_,_,_,_,_,_,_,MADS47,_,EUI1,_,_,MADS17,_,MADS21,_,_,MADS55,MADS22,_,_,MADS13,_,MADS56	,OsDOG1L-2, DOG1L-2,OsEnS-40, EnS-40,,OsMADS20,PPR,PPR,PPR,,pla1, OsPLA1, plt1, CYP78A11,PPR,PPR,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,OsCYP704A5,,OsCYP704A3,,PPR,,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,PPR,OsMADS32, CFO1, CFO1/OsMADS32, TRI1, OsMADS32/CFO, CFO,,PPR,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,PPR,,,OsUBP1-5, OsUBP31, UBP31,PPR,OsMADS4, PI1,,PPR,,OsPME8,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,PPR,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,,OsMADS58,OsMADS29, MADS29, OsFST,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,ge1, ge, CYP78A13, OsCYP78A13, GE, BG2, GES,CYP714B2,OsMADS26, FDRMADS3, RMADS220,OsMADS6, MADS6, OsMFO1,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,pdc1*, pdc1, pdc4, pdc 1, PDC 1, RRJ2,,OsUBP1-8, OsUBP33, UBP33,PPR,PPR,SIP7,,,,,,OsMADS47, OsMDP1, MDP, MDP1,,eui1, GA16,17ox, CYP714D1, EUI, CYP714D1/EUI, OsEUI,PPR,PPR,OsMADS17, NMADS3, RMADS213, nmads3,,OsMADS21, RMADS207,DWF1, DIM/DWF1, DIM,,OsMADS55,OsMADS22, RMD1,,,OsMADS13, MAF1, RMADS206,,OsMADS56, FDRMADS8, RMADS214
45524	29885462	Du X., Wang H., He J., Zhu B., Guo J., Hou W., Weng Q., Zhang X.	Identification of nicotianamine synthase genes in Triticum monococcum and their expression under different Fe and Zn concentrations.	Gene	672	1-7	2018		
45525	29880691	Yu X., Zhao Z., Zheng X., Zhou J., Kong W., Wang P., Bai W., Zheng H., Zhang H., Li J., Liu J., Wang Q., Zhang L., Liu K., Yu Y., Guo X., Wang J., Lin Q., Wu F., Ren Y., Zhu S., Zhang X., Cheng Z., Lei C., Liu S., Liu X., Tian Y., Jiang L., Ge S., Wu C., Tao D., Wang H., Wan J.	A selfish genetic element confers non-Mendelian inheritance in rice.	Science	360(6393)	1130-1132	2018	_,_,_	qHMS7 ORF3,qHMS7 ORF1,qHMS7 ORF2
45526	29988452	Li H., Chen M., Duan L., Zhang T., Cao Y., Zhang Z.	Domain Swap Approach Reveals the Critical Roles of Different Domains of SYMRK in root nodule Symbiosis in <i>Lotus japonicus</i>.	Front Plant Sci	9	697	2018	SYMRK	OsSYMRK
45527	29925586	Ding Y., Gong S., Wang Y., Wang F., Bao H., Sun J., Cai C., Yi K., Chen Z., Zhu C.	MicroRNA166 Modulates Cadmium Tolerance and Accumulation in Rice.	Plant Physiol.	177(4)	1691-1703	2018	GCC7,HMA2,HB4	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3,OsHMA2, osHMA2, OsHMA2v ,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3
45528	29614441	Baiya S., Mahong B., Lee S.K., Jeon J.S., Ketudat Cairns JR.	Demonstration of monolignol beta-glucosidase activity of rice Os4BGlu14, Os4BGlu16 and Os4BGlu18 in Arabidopsis thaliana bglu45 mutant.	Plant Physiol. Biochem.	127	223-230	2018		
45529	29884124	Milner M.J., Howells R.M., Craze M., Bowden S., Graham N., Wallington E.J.	A PSTOL-like gene, TaPSTOL, controls a number of agronomically important traits in wheat.	BMC Plant Biol.	18(1)	115	2018		
45530	29614319	Guo Z., Yang W., Chang Y., Ma X., Tu H., Xiong F., Jiang N., Feng H., Huang C., Yang P., Zhao H., Chen G., Liu H., Luo L., Hu H., Liu Q., Xiong L.	Genome-Wide Association Studies of Image Traits Reveal Genetic Architecture of Drought Resistance in Rice.	Mol Plant	11(6)	789-805	2018	DREB2A,WRKY13,_	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsWRKY13,OsPP15, PP15, OsPP2C09, OsPP2C9, PP2C9
45531	29953946	Ma J., Wang Y., Xu N., Jin L., Liu J., Xing S., Li X.	Potential large scale production of meningococcal vaccines by stable overexpression of fHbp in the rice seeds.	Protein Expr. Purif.	152	1-6	2018		
45532	29977247	James D., Borphukan B., Fartyal D., Ram B., Singh J., Manna M., Sheri V., Panditi V., Yadav R., Achary V.M.M., Reddy M.K.	Concurrent Overexpression of <i>OsGS1;1</i> and <i>OsGS2</i> Genes in Transgenic Rice (<i>Oryza sativa</i> L.): Impact on Tolerance to Abiotic Stresses.	Front Plant Sci	9	786	2018	GS2,GLN1;1	OsGS2, GLN2, RGS31,OsGLN1;1, GS1, RGS28, OsGS1;1, GS1;1, OsGS, GS1, GLN1-1
45533	29901843	Hong Y., Zhang Y., Sinumporn S., Yu N., Zhan X., Shen X., Chen D., Yu P., Wu W., Liu Q., Cao Z., Zhao C., Cheng S., Cao L.	Premature leaf senescence 3, encoding a methyltransferase, is required for melatonin biosynthesis in rice.	Plant J.			2018	_,_,2ODD11,HD5,_,TYDC,TDC2,HD3A,2ODD19,HD2,TDC1,SL,SE1,SNAT1,_,RCCR1,LLB,_	Osh36, OsH36, H36, OsAMTR1, AMTR1,OsSTA135, STA135, OsODD21, ODD21, 2-ODD21, Os2-ODD21, Os2ODD21,OsODD11, ODD11, 2-ODD11, Os2-ODD11, 2ODD11, Os2ODD11,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2,TyDC, OsTyDC, OsTYDC, TDC, OsTDC3, TDC3,OsTDC2,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsODD19, ODD19, 2-ODD19, Os2-ODD19, Os2ODD19,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,OsTDC, TDC2, OsTDC1,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsSNAT1, OsSNAT, SNAT,ZRP4, OMT, ASMT, OsASMT1, ASMT1,OsRCCR1, OsRCCR, RCCR,OsLLB, LCMT, OsMTS1, MTS1, PLS3,ZRP4, OsASMT2, ASMT2
45534	29980098	Mekawy A.M.M., Abdelaziz M.N., Ueda A.	Apigenin pretreatment enhances growth and salinity tolerance of rice seedlings.	Plant Physiol. Biochem.	130	94-104	2018		
45535	29701802	Qu X., Yan M., Zou J., Jiang M., Yang K., Le J.	A2-type cyclin is required for the asymmetric entry division in rice stomatal development.	J. Exp. Bot.	69(15)	3587-3599	2018	CYCA2;1,CDKB;1	CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,CDKB;1, Orysa;CDKB;1, CDKB1;1, Orysa;CDKB1;1, OsCDKB1.1, CDKB1.1, OsCDKB1;1
45536	29893915	Chen N., Wang P., Li C., Wang Q., Pan J., Xiao F., Wang Y., Zhang K., Li C., Yang B., Sun C., Deng X.	A single nucleotide mutation of IspE gene participating in the MEP pathway for isoprenoid biosynthesis causes green-revertible yellow leaf phenotype in rice.	Plant Cell Physiol.			2018		
45537	29465802	Chen M., Chen J., Luo N., Qu R., Guo Z., Lu S.	Cholesterol accumulation by suppression of SMT1 leads to dwarfism and improved drought tolerance in herbaceous plants.	Plant Cell Environ.	41(6)	1417-1426	2018	ADSS,SAMDC2,CNGC8,TCF,SMT1-1,_,SMT1-2,SMT1-3,LRK7,_	OsAdSS, AdSS, ASS2, OsASS2,SamDC2, AdoMetDC2, OsSAMDC2,OsCNGC8, OsCNGC6, OsCNGC9,OsTCF,Ossmt1-1, OsSMT1-1,OsSAHH, SAHH,OsSMT1-2,OsSMT1-3,OsLRk7, LRk7,OsMYB48, MYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59
45538	30013584	Song J., Li J., Sun J., Hu T., Wu A., Liu S., Wang W., Ma D., Zhao M.	Genome-Wide Association Mapping for cold tolerance in a Core Collection of Rice (<i>Oryza sativa</i> L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing.	Front Plant Sci	9	875	2018	DREB1C,_,FTSH9,_,_,_,_	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsWD40-19, WD40-19,OsFtsH9, FtsH9,OsPGL31, PGL31,OsPP2C07, PP2C07, OsPP2C7, PP2C7, OsPP11, PP11,OsRH25, RH25,
45539	29572657	Zeng D.D., Yang C.C., Qin R., Alamin M., Yue E.K., Jin X.L., Shi C.H.	A guanine insert in OsBBS1 leads to early leaf senescence and salt stress sensitivity in rice (Oryza sativa L.).	Plant Cell Rep.	37(6)	933-946	2018	RCCR1,CDPK17,DOS,BBS1,SALT,NAC58,NYC3,RMC	OsRCCR1, OsRCCR, RCCR,OsCDPK17, OsCPK17, CPK17, OsCPK17.1, OsCPK17.2, OsCPK17.3, OsCPK17.4, OsCPK17.5,OsDOS, OsC3H2, C3H2, OsTZF2, OsCCCH-Zn-4,OsRLCK109, RLCK109, OsBBS1, OSBBS1/OsRLCK109,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,nyc3, OsNYC3, PPH,OsRMC, OsRLK, OsDUF26, DUF26
45540	29775500	Du L., Xu F., Fang J., Gao S., Tang J., Fang S., Wang H., Tong H., Zhang F., Chu J., Wang G., Chu C.	Endosperm sugar accumulation caused by mutation of phs8/ISA1 leads to pre-harvest sprouting in rice.	Plant J.	95(3)	545-556	2018	ISA1,VP1,_	OsISA1, ISA, OsISA, PHS8, PHS8/ISA1,Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1,OsMFT2, MFT2, OsMFT
45541	30100799	Peng D., Tan X., Zhang L., Yuan D., Lin J., Liu X., Jiang Y., Zhou B.	Increasing branch and seed yield through heterologous expression of the novel rice S-acyl transferase gene <i>OsPAT15</i> in <i>Brassica napus</i> L.	Breed. Sci.	68(3)	326-335	2018	DHHC1	OsDHHC1, OsPAT15, PAT15
45542	29951703	Liu J., Sun X., Xu F., Zhang Y., Zhang Q., Miao R., Zhang J., Liang J., Xu W.	Suppression of OsMDHAR4 enhances heat tolerance by mediating H2O2-induced stomatal closure in rice plants.	Rice (N Y)	11(1)	38	2018	_	OsMDAR2, OsMDHAR2, MDAR2, MDHAR2, OsMDHAR4, MDHAR4
45543	29546443	Xie K., Wu S., Li Z., Zhou Y., Zhang D., Dong Z., An X., Zhu T., Zhang S., Liu S., Li J., Wan X.	Map-based cloning and characterization of Zea mays male sterility33 (ZmMs33) gene, encoding a glycerol-3-phosphate acyltransferase.	Theor. Appl. Genet.	131(6)	1363-1378	2018		
45544	29770515	Dvorak J., Wang L., Zhu T., Jorgensen C.M., Deal K.R., Dai X., Dawson M.W., M?ller HG., Luo M.C., Ramasamy R.K., Dehghani H., Gu Y.Q., Gill B.S., Distelfeld A., Devos K.M., Qi P., You F.M., Gulick P.J., McGuire P.E.	Structural variation and rates of genome evolution in the grass family seen through comparison of sequences of genomes greatly differing in size.	Plant J.	95(3)	487-503	2018		
45545	29915329	Song S., Chen Y., Liu L., See Y.H.B., Mao C., Gan Y., Yu H.	OsFTIP7 determines auxin-mediated anther dehiscence in rice.	Nat Plants	4(7)	495-504	2018	FTIP7,OSH1,YUCCA4	OsFTIP7,OSKN1, Oskn1, OsKN1, OSH1/Oskn1, HB75,OsYUCCA4, OsYUC4, YUC4
45546	29971074	Chen Y., Qian J., You L., Zhang X., Jiao J., Liu Y., Zhao J.	Subunit Interaction Differences Between the Replication factor C Complexes in <i>Arabidopsis</i> and Rice.	Front Plant Sci	9	779	2018	_,_,_,_,_	RFC1, OsRFC1,OsRFC3, RFC3,RFC4, OsRFC4,RFC5, OsRFC5,RFC2, OsRFC2
45547	29943288	Zheng Y., Yan J., Wang S., Xu M., Huang K., Chen G., Ding Y.	Genome-wide identification of the Pectate lyase-like (PLL) gene family and functional analysis of two PLL genes in rice.	Mol. Genet. Genomics	293(6)	1317-1331	2018	_,_,_,_,_,_,PSE1,_,DEL1,_,_,_	OsPLL3, PLL3,OsPLL4, PLL4, OsPLL4.1, OsPLL4.2,OsPLL8, PLL8,OsPLL10, PLL10,OsPLL9, PLL9,OsPLL5, PLL5,OsPSE1, OsPLL1, PLL1,OsPLL6, PLL6,OsPLL12, PLL12,OsPLL2, PLL2,OsPLL7, PLL7,OsPLL11, PLL11
45548	29955063	Sun S., Wang T., Wang L., Li X., Jia Y., Liu C., Huang X., Xie W., Wang X.	Natural selection of a GSK3 determines rice mesocotyl domestication by coordinating strigolactone and brassinosteroid signaling.	Nat Commun	9(1)	2523	2018	CYCU2;1,D3,D11,D2,_	CycU2;1, CycU2;os;1, Orysa;CycU2;1, OsCYCP3;1, CYC U2,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 
45549	29569182	Zhong R., Cui D., Dasher R.L., Ye Z.H.	Biochemical characterization of rice xylan O-acetyltransferases.	Planta	247(6)	1489-1498	2018	XOAT13,XOAT14,XOAT1,XOAT11,XOAT4,XOAT3,XOAT9,XOAT2,XOAT5,XOAT10,XOAT12,XOAT6,XOAT8,XOAT7	OsTBL1, TBL1, OsXOAT13,OsTBL3, TBL3, OsXOAT14,OsTBL12, TBL12, OsXOAT1,OsTBL6, TBL6, OsXOAT11,OsTBL10, TBL10, OsXOAT4,OsTBL9, TBL9, OsXOAT3,OsTBL4, TBL4, OsXOAT9,OsTBL11, TBL11, OsXOAT2,OsTBL13, TBL13, OsXOAT5,OsTBL5, TBL5, OsXOAT10,OsTBL2, TBL2, OsXOAT12,OsTBL15, TBL15, OsXOAT6,OsTBL8, TBL8, OsXOAT8,OsTBL14, TBL14, OsXOAT7
45550	29947463	He Y., Cheng J., He Y., Yang B., Cheng Y., Yang C., Zhang H., Wang Z.	Influence of Isopropylmalate synthase OsIPMS1 on seed vigour associated with amino acid and energy metabolism in rice.	Plant Biotechnol. J.			2018	IPMS2,IPMS1	OsIPMS2,OsIPMS1
45551	29878383	Hu L., Ye M., Kuai P., Ye M., Erb M., Lou Y.	OsLRR-RLK1, an early responsive leucine-rich repeat receptor-like kinase, initiates rice defense responses against a chewing herbivore.	New Phytol.	219(3)	1097-1111	2018	WRKY30,MAPK6,WRKY53,WRKY81,WRKY70,_,MSRMK2,ACS2,_,SMG1,WRKY45,AOS1,LRR-RLK1,WRKY24	OsWRKY30,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsWRKY53, WRKY-53,OsWRKY81, OsWRKY33,OsWRKY70,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsACS2, Os-ACS2,ICS1, OsICS1, OsICS, ICS,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsWRKY45,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsLRR-RLK1,OsWRKY24
45552	29936261	Laura B., Silvia P., Francesca F., Benedetta S., Carla C.	Epigenetic control of defense genes following MeJA-induced priming in rice (O. sativa).	J. Plant Physiol.	228	166-177	2018	POX22.3,RBBI3-3	POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,RBBI3-3, OsBBPI, BBPI
45553	29785641	Mani A., Sankaranarayanan K.	In Silico Analysis of Natural Resistance-Associated Macrophage Protein (NRAMP) Family of Transporters in Rice.	Protein J.	37(3)	237-247	2018	NRAMP1,NRAMP5,NRAMP6,NRAMP4,NRAMP2,NRAMP3,NRAMP7	OsNramp1, OsNRAMP1, OsNramp6,OsNRAMP5, OsNramp5,OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,OsNramp2, OsNRAMP2,OsNramp3, OsNRAMP3,OsNRAMP7
45554	29365136	Jiang D., Chen W., Dong J., Li J., Yang F., Wu Z., Zhou H., Wang W., Zhuang C.	Overexpression of miR164b-resistant OsNAC2 improves plant architecture and grain yield in rice.	J. Exp. Bot.	69(7)	1533-1543	2018	NAC2,GHD7,HD5,WFP,MIR164B,DEP1	OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,miR164b, osa-miR164b,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
45555	29566032	Yang W.T., Baek D., Yun D.J., Lee K.S., Hong S.Y., Bae K.D., Chung Y.S., Kwon Y.S., Kim D.H., Jung K.H., Kim D.H.	Rice OsMYB5P improves plant phosphate acquisition by regulation of phosphate transporter.	PLoS ONE	13(3)	e0194628	2018	PT5,_	OsPT5, OsPht1;5, Pht1;5, PHT1-5,OsMYB30, MYB30, OsMYB5P, MYB5P
45556	29614396	Han C.S., Kim S., Lee S.E., Choi S., Kim S.H., Yoon I.S., Hwang Y.S.	Cross-talk between ABA and sugar signaling is mediated by the ACGT core and CE1 element reciprocally in OsTIP3;1 promoter.	J. Plant Physiol.	224-225	103-111			
45557	29577692	Wang Y., Jia P., Li X., Li Y., Chen P.	[Cloning of Oryza sativa N-glycanase gene (OsPNGase A) and its expression in Pichia pastoris].	Sheng Wu Gong Cheng Xue Bao	34(3)	421-428	2018		
45558	29616055	Zhao Y., Zhao W., Jiang C., Wang X., Xiong H., Todorovska E.G., Yin Z., Chen Y., Wang X., Xie J., Pan Y., Rashid M.A.R., Zhang H., Li J., Li Z.	Genetic Architecture and Candidate Genes for Deep-Sowing Tolerance in Rice Revealed by Non-Syn GWAS.	Front Plant Sci	9	332	2018	ML1,ML2	OsML1,OsML2
45559	29588443	Zhao D.S., Li Q.F., Zhang C.Q., Zhang C., Yang Q.Q., Pan L.X., Ren X.Y., Lu J., Gu M.H., Liu Q.Q.	gs9 acts as a transcriptional activator to regulate rice grain shape and appearance quality.	Nat Commun	9(1)	1240	2018	_,CDC2-1,_,_,GS9,_,CYCB1;1,CYCB2;2,CDKB2;1 ,_	GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,cdc2Os-1, CDC2Os-1, CDKA-1, CDKA;1, Orysa;CDKA;1, OsCDKA;1, cdc2Os1, Rcdc2-1, OsCDKA1, CDKA1,OsOFP10, OsOFP14, OFP10, OFP14,OsOFP30, OsOFP08, OsOFP8, OFP8, OFP30,,MAD2, OsMAD2,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,H1, OsH1
45560	29373713	Ma J., Chen J., Wang M., Ren Y., Wang S., Lei C., Cheng Z., Sodmergen	Corrigendum: Disruption of OsSEC3A increases the content of salicylic acid and induces plant defense responses in rice.	J. Exp. Bot.	69(7)	1817	2018		
45561	29614397	Boonpa K., Tantong S., Weerawanich K., Panpetch P., Pringsulaka O., Yingchutrakul Y., Roytrakul S., Sirikantaramas S.	Heterologous expression and antimicrobial activity of OsGASR3 from rice (Oryza sativa L.).	J. Plant Physiol.	224-225	95-102			
45562	29597290	Verma J.K., Wardhan V., Singh D., Chakraborty S., Chakraborty N.	Genome-Wide Identification of the Alba Gene Family in Plants and Stress-Responsive Expression of the Rice Alba Genes.	Genes (Basel)	9(4)		2018	ALBA4,ALBA2,ALBA8,ALBA6,ALBA5,ALBA7,ALBA1,ALBA3,ALBA9	OsAlba4, Alba4,OsAlba2, Alba2,OsAlba8, Alba8,OsAlba6, Alba6,OsAlba5, Alba5,OsAlba7, Alba7,OsAlba1, Alba1,OsAlba3, Alba3,OsAlba9, Alba9
45563	29548275	He H., Yang Q., Shen B., Zhang S., Peng X.	OsNOA1 functions in a threshold-dependent manner to regulate chloroplast proteins in rice at lower temperatures.	BMC Plant Biol.	18(1)	44	2018	_	NOA1, OsNOA1
45564	29562647	Chaiwong N., Prom-U-Thai C., Bouain N., Lacombe B., Rouached H.	Individual versus Combinatorial Effects of Silicon, Phosphate, and Iron Deficiency on the Growth of Lowland and Upland Rice Varieties.	Int J Mol Sci	19(3)		2018	PHO1;2	OsPHO1;2
45565	29558477	Kim Y., Mun B.G., Khan A.L., Waqas M., Kim H.H., Shahzad R., Imran M., Yun B.W., Lee I.J.	Regulation of reactive oxygen and nitrogen species by salicylic acid in rice plants under salinity stress conditions.	PLoS ONE	13(3)	e0192650	2018	CATA,APX1,_	CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,OsGSNOR, GSNOR, GSNOR1, OsGSNOR1
45566	29574487	Theerawitaya C., Yamada-Kato N., Singh H.P., Cha-Um S., Takabe T.	Isolation, expression, and functional analysis of developmentally regulated plasma membrane polypeptide 1 (DREPP1) in Sporobolus virginicus grown under alkali salt stress.	Protoplasma	255(5)	1423-1432	2018		
45567	29547864	Cao Z.Z., Qin M.L., Lin X.Y., Zhu Z.W., Chen M.X.	Sulfur supply reduces cadmium uptake and translocation in rice grains (Oryza sativa L.) by enhancing iron plaque formation, cadmium chelation and vacuolar sequestration.	Environ. Pollut.	238	76-84	2018		
45568	29494624	Santos FICD., Marini N., Santos R.S.D., Hoffman B.S.F., Alves-Ferreira M., de Oliveira AC.	Selection and testing of reference genes for accurate RT-qPCR in rice seedlings under iron toxicity.	PLoS ONE	13(3)	e0193418	2018	_,RFA4,_,C3H3,_	GAPDH, OsGAPDH, OsGapC2,rfa4*, REFA4, refa4, eEF-1a, OsEF-1a, OsEF1A, EF1A, eIF-1-alpha,,OsC3H3,OsNABP, NABP
45569	29497052	Kim S.R., Ramos J.M., Hizon R.J.M., Ashikari M., Virk P.S., Torres E.A., Nissila E., Jena K.K.	Introgression of a functional epigenetic OsSPL14WFP allele into elite indica rice genomes greatly improved panicle traits and grain yield.	Sci Rep	8(1)	3833	2018	GN1A,WFP	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1
45570	29497084	Filipe O., De Vleesschauwer D., Haeck A., Demeestere K., H?fte M.	The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice.	Sci Rep	8(1)	3864	2018	WRKY62,PR10A,AOS2,JIOSPR10,PR1B,JAMYB,OSK1,PAL1,WRKY45	OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsAOS2, CYP74A2, OsAOS, OsAOS1,JIOsPR10, OsPR10, PR10 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsJAmyb, JAmyb, OsJAMyb ,osk1, SnRK1A, OsSnRK1A, OsSNRK1a, SnRK1A/OSK1, SnRK1a,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsWRKY45
45571	29272542	Zhu X., Shen W., Huang J., Zhang T., Zhang X., Cui Y., Sang X., Ling Y., Li Y., Wang N., Zhao F., Zhang C., Yang Z., He G.	Mutation of the OsSAC1 Gene, which Encodes an Endoplasmic Reticulum Protein with an Unknown Function, Causes Sugar Accumulation in Rice Leaves.	Plant Cell Physiol.	59(3)	487-499	2018	AGPS1,XA13,GSD1,SPS1,MOC2,SPS11,SAC1,11N3,TPT2,MT,SUT1,TPT1,_,SUT2,CFBP2,AGPL3	OsAGPS1, APS1, OsAPS1, AGPsma,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsREM6.6, REM6.6, OsGSD1,sps1, OsSPS1, SPS,FR, OsFR, FBP1, OsFBP1, OsMOC2, OscFBP1, cFBP1,sps11, OsSPS11, OsSPS5, SPS5,OsSAC1,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,OsTPT2,OsMT, OsMEX1, MEX1,OsSUT1, OsSUT2,OsTPT1, TPT, tpt,Pho1, OsPho1, OsPHOL, PHOL,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OscFBP2, cFBP2,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1
45572	29361060	Park Y.C., Chapagain S., Jang C.S.	A Negative Regulator in Response to Salinity in Rice: Oryza sativa Salt-, ABA- and Drought-Induced RING Finger Protein 1 (OsSADR1).	Plant Cell Physiol.	59(3)	575-589	2018	GRAS46,NAC6,SADR1,PRN	OsGRAS44, OsGRAS-44, GRAS-44, GRAS44, OsGRAS-46, OsGRAS46, GRAS-46,OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2,OsRFP, OsSADR1,OsPRN
45573	29401229	Kaneko-Suzuki M., Kurihara-Ishikawa R., Okushita-Terakawa C., Kojima C., Nagano-Fujiwara M., Ohki I., Tsuji H., Shimamoto K., Taoka K.I.	TFL1-Like Proteins in Rice Antagonize Rice FT-Like Protein in Inflorescence Development by Competition for Complex Formation with 14-3-3 and FD.	Plant Cell Physiol.	59(3)	458-468	2018	GID2,GF14B,RCN2,GF14F,BZIP77,RCN4,RAP1A,GF14C,RCN3,HD3A	gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,GF14b, OsGF14b, 14-3-3b,Rcn2, OsRCN2,GF14f, SR14-3-3, OsGF14f, S94, ric1, 14-3-3f,OsbZIP77, OsFD1, FD1,Rcn4, OsRCN4,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,GF14c, OsGF14c, 14-3-3c,Rcn3, OsRCN3, RCN3/FDR1, FDR1, Fdr1, OsFDR1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
45574	29892794	Kim S.H., Woo O.G., Jang H., Lee J.H.	Characterization and comparative expression analysis of CUL1 genes in rice.	Genes Genomics	40(3)	233-241	2018	CUL1-2,CUL1-3	OsCUL1-2,OsCUL1-3
45575	29593766	Shim J.S., Oh N., Chung P.J., Kim Y.S., Choi Y.D., Kim J.K.	Overexpression of <i>OsNAC14</i> Improves drought tolerance in Rice.	Front Plant Sci	9	310	2018	_,_,_,WRKY50,_,CYP71Z2,RLCK66,XA39,_,_,_,PIZT,NAC14,WSI18,_,RAD51A1,RBCS,AGP29,_,ERF101,_,_,DHN1,CIPK33,_	OsMSH4, MSH4,OsPDR20, RDR20,OsCCD8a, OsCCD8c, CCD8a, CCD8c,OsWRKY50,OsPAE1, PAE1,Oscyp71Z2,OsRLCK66,Xa39,OsTPS10, TPS10,OsFbox341, Fbox341, Os_F0215,OsiWAK1, WAK1,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,ONAC014, ONAC14, OsNAC14, NAC14,OsLEA14, OsLEA14a, OsLEA14b, wsi18, pwsi18, OsLEA14/WSI18,OsIAS, OsOSC11, IAS, OSC11,OsRAD51A1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsAGP29,,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6,OsSTA127, STA127,HSR201,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsCIPK33,ILL8
45576	29559992	Zhu C.Q., Zhang J.H., Sun L.M., Zhu L.F., Abliz B., Hu W.J., Zhong C., Bai Z.G., Sajid H., Cao X.C., Jin Q.Y.	Hydrogen Sulfide Alleviates Aluminum Toxicity via Decreasing Apoplast and Symplast Al Contents in Rice.	Front Plant Sci	9	294	2018	ALS1,_,STAR1,NRAMP4,STAR2	OsALS1, OsABCB25, ABCB25,OsFRDL4, FRDL4, MATE,OsENA2, OsABCI12, ENA2, ABCI12, OsSTAR1, OsSATR1,OsNRAMP4, Nrat1, Nramp6, OsNRAT1, FCO5,OsSTAR2, OsSATR2
45577	29511223	Soda N., Gupta B.K., Anwar K., Sharan A., Govindjee, Singla-Pareek SL., Pareek A.	Rice intermediate filament, OsIF, stabilizes photosynthetic machinery and yield under salinity and heat stress.	Sci Rep	8(1)	4072	2018	IF	OsIFL, IFL, OsIF
45578	29568307	Huang W., Bai G., Wang J., Zhu W., Zeng Q., Lu K., Sun S., Fang Z.	Two Splicing Variants of <i>OsNPF7.7</i> Regulate shoot branching and Nitrogen Utilization Efficiency in Rice.	Front Plant Sci	9	300	2018	_,AMT1;3,_,D3,FC1,GLN1;2,_	OsPTR10, PTR10, OsNPF7.7, NPF7.7, OsNPF7.7-1, OsNPF7.7-2,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,NRT1.1B, OsNRT1.1B, OsNPF6.5, NPF6.5,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,fc1, OsTB1, tb1, OsTB1/FC1, Os TB1, TB1, OsFC1,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR
45579	29718461	Callens C., Tucker M.R., Zhang D., Wilson Z.A.	Dissecting the role of MADS-box genes in monocot floral development and diversity.	J. Exp. Bot.	69(10)	2435-2459	2018		
45580	29616502	Ye J., Yang Y.L., Wei X.H., Niu X.J., Wang S., Xu Q., Yuan X.P., Yu H.Y., Wang Y.P., Feng Y., Wang S.	PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice.	J Zhejiang Univ Sci B	19(4)	263-273		CATB,_,YGL9,APX2,_,_,_	CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,Osh36, OsH36, H36, OsAMTR1, AMTR1,OscpSRP43, cpSRP43, PGL3,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsDVR, DVR,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsPorA, PORA, OsPORA
45581	29686055	Salem M.A., Li Y., Bajdzienko K., Fisahn J., Watanabe M., Hoefgen R., Sch?ttler MA., Giavalisco P.	RAPTOR Controls Developmental Growth Transitions by Altering the Hormonal and Metabolic Balance.	Plant Physiol.	177(2)	565-593	2018		
45582	29708601	Tamim S., Cai Z., Mathioni S.M., Zhai J., Teng C., Zhang Q., Meyers B.C.	Cis-directed cleavage and nonstoichiometric abundances of 21-nucleotide reproductive phased small interfering RNAs in grasses.	New Phytol.	220(3)	865-877	2018		
45583	29607549	Hwang O.J., Back K.	Melatonin is involved in skotomorphogenesis by regulating brassinosteroid biosynthesis in rice plants.	J. Pineal Res.	65(2)	e12495	2018		
45584	29644569	Jiang H., Hu J., Li Z., Liu J., Gao G., Zhang Q., Xiao J., He Y.	Evaluation and breeding application of six brown planthopper resistance genes in rice maintainer line Jin 23B.	Rice (N Y)	11(1)	22	2018		
45585	29508613	Han B., Yang N., Pu H., Wang T.	Quantitative Proteomics and Cytology of Rice pollen Sterol-Rich Membrane Domains Reveals Pre-established Cell Polarity Cues in Mature pollen.	J. Proteome Res.	17(4)	1532-1546	2018		
45586	29695843	Naveed S.A., Zhang F., Zhang J., Zheng T.Q., Meng L.J., Pang Y.L., Xu J.L., Li Z.K.	Identification of QTN and candidate genes for Salinity Tolerance at the Germination and Seedling Stages in Rice by Genome-Wide Association Analyses.	Sci Rep	8(1)	6505	2018		
45587	29678154	Uga Y., Assaranurak I., Kitomi Y., Larson B.G., Craft E.J., Shaff J.E., McCouch S.R., Kochian L.V.	Genomic regions responsible for seminal and crown root lengths identified by 2D & 3D root system image analysis.	BMC Genomics	19(1)	273	2018		
45588	29731679	Hwang S.N., Kim J.C., Bhuiyan M.I.H., Kim J.Y., Yang J.S., Yoon S.H., Yoon K.D., Kim S.Y.	Black Rice (<i>Oryza sativa L</i>., Poaceae) Extract Reduces Hippocampal Neuronal Cell Death Induced by Transient Global Cerebral Ischemia in Mice.	Exp Neurobiol	27(2)	129-138	2018		
45589	30047109	Wang J., Long Y., Zhang J., Xue M., Huang G., Huang K., Yuan Q., Pei X.	Combined analysis and miRNA expression profiles of the flowering related genes in common wild rice (oryza rufipogon Griff.).	Genes Genomics	40(8)	835-845	2018		
45590	29567670	Shimano S., Hibara K.I., Furuya T., Arimura S.I., Tsukaya H., Itoh J.I.	Conserved functional control, but distinct regulation, of cell proliferation in rice and <i>Arabidopsis</i> leaves revealed by comparative analysis of <i>GRF-INTERACTING FACTOR 1</i> orthologs.	Development	145(7)		2018	_	OsGIF3, GIF3, OsGIF1, GIF1, MKB3
45591	29300919	Jamil M., Kountche B.A., Haider I., Guo X., Ntui V.O., Jia K.P., Ali S., Hameed U.S., Nakamura H., Lyu Y., Jiang K., Hirabayashi K., Tanokura M., Arold S.T., Asami T., Al-Babili S.	Methyl phenlactonoates are efficient strigolactone analogs with simple structure.	J. Exp. Bot.	69(9)	2319-2331	2018		
45592	29875602	Busungu C., Taura S., Sakagami J.I., Anai T., Ichitani K.	High-resolution mapping and characterization of <i>XA42</i>, a resistance gene against multiple <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> races in rice (<i>Oryza sativa</i> L.).	Breed. Sci.	68(2)	188-199	2018	XA42	xa42
45593	29656028	Wu Y., Lee S.K., Yoo Y., Wei J., Kwon S.Y., Lee S.W., Jeon J.S., An G.	Rice Transcription Factor OsDOF11 Modulates Sugar Transport by Promoting Expression of Sucrose Transporter and SWEET Genes.	Mol Plant	11(6)	833-845	2018		
45594	29652669	Ansary W.R., Prince F.R.K., Haque E., Sultana F., West H.M., Rahman M., Mondol A.M., Akanda A.M., Rahman M., Clarke M.L., Islam T.	Endophytic Bacillus spp. from medicinal plants inhibit mycelial growth of Sclerotinia sclerotiorum and promote plant growth.	Z. Naturforsch., C, J. Biosci.	73(5-6)	247-256	2018		
45595	29654242	Dalal V.K., Tripathy B.C.	Water-stress induced downsizing of light-harvesting antenna complex protects developing rice seedlings from photo-oxidative damage.	Sci Rep	8(1)	5955	2018		
45596	29723825	Gazquez A., Vilas J.M., Colman Lerner JE., Maiale S.J., Calzadilla P.I., Men?ndez AB., Rodr?guez AA.	Rice tolerance to suboptimal low temperatures relies on the maintenance of the photosynthetic capacity.	Plant Physiol. Biochem.	127	537-552	2018		
45597	29604159	Macovei A., Sevilla N.R., Cantos C., Jonson G.B., Slamet-Loedin I., ?erm?k T., Voytas D.F., Choi I.R., Chadha-Mohanty P.	Novel alleles of rice eIF4G generated by CRISPR/Cas9-targeted mutagenesis confer resistance to Rice tungro spherical virus.	Plant Biotechnol. J.	16(11)	1918-1927	2018		
45598	29679176	He F., Zhang F., Sun W., Ning Y., Wang G.L.	A Versatile Vector Toolkit for Functional Analysis of Rice Genes.	Rice (N Y)	11(1)	27	2018		
45599	29658119	Zhong Y., Wang Y., Guo J., Zhu X., Shi J., He Q., Liu Y., Wu Y., Zhang L., Lv Q., Mao C.	Rice SPX6 negatively regulates the phosphate starvation response through suppression of the transcription factor PHR2.	New Phytol.	219(1)	135-148	2018	_,PHR2,IPS1,_,_,PT2,_	OsSPX2, SPX2,OsPHR2, Os-PHR2,OsIPS1, IPS1,OsSPX3, SPX3,OsSPX5, SPX5,OsPT2, PTH1-2, OsPht1;2, PHT1;2,OsSPX6, SPX6
45600	29642464	Turrini F., Boggia R., Leardi R., Borriello M., Zunin P.	Optimization of the Ultrasonic-Assisted Extraction of Phenolic Compounds from Oryza Sativa L. 'Violet Nori' and Determination of the Antioxidant Properties of its Caryopses and Leaves.	Molecules	23(4)		2018		
45601	29713381	Liu W., Mazarei M., Ye R., Peng Y., Shao Y., Baxter H.L., Sykes R.W., Turner G.B., Davis M.F., Wang Z.Y., Dixon R.A., Stewart C.N.	Switchgrass (<i>Panicum virgatum</i> L.) promoters for green tissue-specific expression of the <i>MYB4</i> transcription factor for reduced-recalcitrance transgenic switchgrass.	Biotechnol Biofuels	11	122	2018		
45602	29740464	Zhang T., Li R., Xing J., Yan L., Wang R., Zhao Y.	The YUCCA-Auxin-WOX11 Module Controls crown root Development in Rice.	Front Plant Sci	9	523	2018		
45603	29704477	Saini S., Kaur N., Pati P.K.	Reactive oxygen species dynamics in roots of salt sensitive and salt tolerant cultivars of rice.	Anal. Biochem.	550	99-108	2018		
45604	29684018	Yasui Y., Ohmori Y., Takebayashi Y., Sakakibara H., Hirano H.Y.	WUSCHEL-RELATED HOMEOBOX4 acts as a key regulator in early leaf development in rice.	PLoS Genet.	14(4)	e1007365	2018		
45605	29715631	Geng A., Wang X., Wu L., Wang F., Wu Z., Yang H., Chen Y., Wen D., Liu X.	Silicon improves growth and alleviates oxidative stress in rice seedlings (Oryza sativa L.) by strengthening antioxidant defense and enhancing protein metabolism under arsanilic acid exposure.	Ecotoxicol. Environ. Saf.	158	266-273	2018		
45606	29633040	Vanavichit A., Kamolsukyeunyong W., Siangliw M., Siangliw J.L., Traprab S., Ruengphayak S., Chaichoompu E., Saensuk C., Phuvanartnarubal E., Toojinda T., Tragoonrung S.	Thai Hom Mali Rice: Origin and Breeding for Subsistence Rainfed Lowland Rice System.	Rice (N Y)	11(1)	20	2018		
45607	29553800	Wang B., Smith S.M., Li J.	Genetic Regulation of Shoot Architecture.	Annu Rev Plant Biol	69	437-468	2018		
45608	29875612	Wada T., Yamaguchi O., Miyazaki M., Miyahara K., Ishibashi M., Aihara T., Shibuta T., Inoue T., Tsubone M., Toyosawa Y., Satoh H., Akaishi R., Yoshii Y., Ohtsubo K.	Development and characterization of a new rice cultivar, 'Chikushi-kona 85', derived from a starch-branching enzyme IIb-deficient mutant line.	Breed. Sci.	68(2)	278-283	2018		
45609	29671148	Sun J., Yang L., Wang J., Liu H., Zheng H., Xie D., Zhang M., Feng M., Jia Y., Zhao H., Zou D.	Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy.	Rice (N Y)	11(1)	24	2018		
45610	29622876	Sreedhar R., Tiku P.K.	Cupincin: A Novel Cupin Domain Containing Protease from Rice (<i>Oryza sativa</i> L.) Bran Comprising of Procoagulant and Fibrinogenolytic Activity.	Indian J Hematol Blood Transfus	34(2)	314-321	2018		
45611	29700611	Tsunemitsu Y., Genga M., Okada T., Yamaji N., Ma J.F., Miyazaki A., Kato S.I., Iwasaki K., Ueno D.	A member of cation diffusion facilitator family, MTP11, is required for manganese tolerance and high fertility in rice.	Planta	248(1)	231-241	2018		
45612	29688851	Civ?? P., Brown T.A.	Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.).	BMC Evol. Biol.	18(1)	57	2018		
45613	29755498	Wang M., Zhang T., Peng H., Luo S., Tan J., Jiang K., Heng Y., Zhang X., Guo X., Zheng J., Cheng Z.	Rice <i>Premature leaf senescence 2</i>, Encoding a Glycosyltransferase (GT), Is Involved in leaf senescence.	Front Plant Sci	9	560	2018	SWEET4,_,11N3,RSUS1,RSUS4,SGR,SWEET15,SUT2,SUT1,XA13,PLS2,_,RSUS2,NYC3	OsSWEET4,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,sus1, RSus1(t), SUS1, SS2, OsScS2, RSs2, RSus1, SuSy1, OsSUS1, RSS2, RSus2,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,sgr(t), sgr, OsSGR, OsSgr,OsSWEET15,OsSUT2(t), SUT2M, OsSUT2, OsSUT2M, OsSUT5,OsSUT1, OsSUT2,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,SQD2.3, OsSQD2.3,OsPAO, PAO,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,nyc3, OsNYC3, PPH
45614	29778643	Shimatani Z., Fujikura U., Ishii H., Matsui Y., Suzuki M., Ueke Y., Taoka K.I., Terada R., Nishida K., Kondo A.	Inheritance of co-edited genes by CRISPR-based targeted nucleotide substitutions in rice.	Plant Physiol. Biochem.	131	78-83	2018		
45615	29725574	Wang H., Lee A.R., Park S.Y., Jin S.H., Lee J., Ham T.H., Park Y., Zhao W.G., Kwon S.W.	Genome-wide association study reveals candidate genes related to low temperature tolerance in rice (<i>Oryza sativa</i>) during germination.	3 Biotech	8(5)	235	2018		
45616	29656249	An S., Niu X., Chen W., Sheng H., Lai S., Yang Z., Gu X., Zhou S.	Mechanism of matrix-bound phosphine production in response to atmospheric elevated CO2 in paddy soils.	Environ. Pollut.	239	253-260	2018		
45617	29679934	Guha T., Ravikumar K.V.G., Mukherjee A., Mukherjee A., Kundu R.	Nanopriming with zero valent iron (nZVI) enhances germination and growth in aromatic rice cultivar (Oryza sativa cv. Gobindabhog L.).	Plant Physiol. Biochem.	127	403-413	2018		
45618	29637380	Nan J., Feng X., Wang C., Zhang X., Wang R., Liu J., Yuan Q., Jiang G., Lin S.	Improving rice grain length through updating the GS3 locus of an elite variety Kongyu 131.	Rice (N Y)	11(1)	21	2018		
45619	29577000	Sathish S., Venkatesh R., Safia N., Sathishkumar R.	Studies on growth dynamics of embryogenic cell suspension cultures of commercially important <i>Indica</i> rice cultivars ASD16 and Pusa basmati.	3 Biotech	8(4)	194	2018		
45620	29850513	Tomita M., Ishii K.	Genetic Performance of the Semidwarfing Allele <i>sd1</i> Derived from a Japonica Rice Cultivar and Minimum Requirements to Detect Its Single-Nucleotide Polymorphism by MiSeq Whole-Genome Sequencing.	Biomed Res Int	2018	4241725	2018		
45621	29706977	Zhang G.M., Zheng T.Q., Chen Z., Wang Y.L., Wang Y., Shi Y.M., Wang C.C., Zhang L.Y., Ma J.T., Deng L.W., Li W., Xu T.T., Liang C.Z., Xu J.L., Li Z.K.	Joint Exploration of Favorable Haplotypes for Mineral Concentrations in Milled Grains of Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	447	2018		
45622	29636002	Hayashi M., Crofts N., Oitome N.F., Fujita N.	Analyses of starch biosynthetic protein complexes and starch properties from developing mutant rice seeds with minimal Starch synthase activities.	BMC Plant Biol.	18(1)	59	2018		
45623	29692791	Yang B., Xu S., Xu L., You H., Xiang X.	Effects of <i>Wx</i> and Its Interaction With <i>SSIII-2</i> on Rice Eating and Cooking Qualities.	Front Plant Sci	9	456	2018		
45624	29719548	Duan L., Han J., Guo Z., Tu H., Yang P., Zhang D., Fan Y., Chen G., Xiong L., Dai M., Williams K., Corke F., Doonan J.H., Yang W.	Novel Digital Features Discriminate Between Drought Resistant and Drought Sensitive Rice Under Controlled and Field Conditions.	Front Plant Sci	9	492	2018		
45625	29509070	Chaiyaso T., Srisuwan W., Techapun C., Watanabe M., Takenaka S.	Direct bioconversion of rice residue from canteen waste into lipids by new amylolytic oleaginous yeast Sporidiobolus pararoseus KX709872.	Prep. Biochem. Biotechnol.	48(4)	361-371	2018		
45626	29698758	Lee J.P., Lee H.W., Na H.B., Lee J.H., Hong Y.J., Jeon J.M., Kwon E.J., Kim S.K., Kim H.	Characterization of truncated endo-beta-1,4-glucanases from a compost metagenomic library and their saccharification potentials.	Int. J. Biol. Macromol.	115	554-562	2018		
45627	29632394	Wang Q.L., Sun A.Z., Chen S.T., Chen L.S., Guo F.Q.	SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.	Nat Plants	4(5)	280-288	2018		
45628	29983960	Graham-Acquaah S., Saito K., Traore K., Dieng I., Alognon A., Bah S., Sow A., Manful J.T.	Variations in agronomic and grain quality traits of rice grown under irrigated lowland conditions in West Africa.	Food Sci Nutr	6(4)	970-982	2018		
45629	29608565	Bouain N., Satbhai S.B., Korte A., Saenchai C., Desbrosses G., Berthomieu P., Busch W., Rouached H.	Natural allelic variation of the AZI1 gene controls root growth under zinc-limiting condition.	PLoS Genet.	14(4)	e1007304	2018		
45630	29595845	Du P., Wu Y., Yu J.S.	Real-time detection of the nanoparticle induced phytotoxicity in rice root tip through the visible red emissions of Eu3+ ions.	Photochem. Photobiol. Sci.	17(4)	499-504	2018		
45631	29658118	Li G.Z., Wang Z.Q., Yokosho K., Ding B., Fan W., Gong Q.Q., Li G.X., Wu Y.R., Yang J.L., Ma J.F., Zheng S.J.	Transcription factor WRKY22 promotes aluminum tolerance via activation of OsFRDL4 expression and enhancement of citrate secretion in rice (Oryza sativa).	New Phytol.	219(1)	149-162	2018		
45632	29709624	Taniguchi M., Ochiai A., Namae T., Saito K., Kato T., Saitoh E., Tanaka T.	The antimicrobial and anti-endotoxic peptide AmyI-1-18 from rice alpha-amylase and its [N3L] analog promote angiogenesis and cell migration.	Peptides	104	78-84	2018		
45633	29707435	Zhang G., Hua Z.	Genome comparison implies the role of Wsm2 in membrane trafficking and protein degradation.	PeerJ	6	e4678	2018		
45634	29641510	Sinha S.K., Sevanthi V AM., Chaudhary S., Tyagi P., Venkadesan S., Rani M., Mandal P.K.	Transcriptome Analysis of Two Rice Varieties Contrasting for Nitrogen Use Efficiency under Chronic N Starvation Reveals Differences in Chloroplast and Starch Metabolism-Related Genes.	Genes (Basel)	9(4)		2018		
45635	29655066	Rao Z.X., Huang D.Y., Wu J.S., Zhu Q.H., Zhu H.H., Xu C., Xiong J., Wang H., Duan M.M.	Distribution and availability of cadmium in profile and aggregates of a paddy soil with 30-year fertilization and its impact on Cd accumulation in rice plant.	Environ. Pollut.	239	198-204	2018		
45636	29577566	Cai Y., Li S., Jiao G., Sheng Z., Wu Y., Shao G., Xie L., Peng C., Xu J., Tang S., Wei X., Hu P.	OsPK2 encodes a plastidic pyruvate kinase involved in rice endosperm starch synthesis, compound granule formation and grain filling.	Plant Biotechnol. J.	16(11)	1878-1891	2018		
45637	29672536	Ohmido N., Iwata A., Kato S., Wako T., Fukui K.	Development of a quantitative pachytene chromosome map and its unification with somatic chromosome and linkage maps of rice (Oryza sativa L.).	PLoS ONE	13(4)	e0195710	2018		
45638	29685102	Mishima K., Hirao T., Tsubomura M., Tamura M., Kurita M., Nose M., Hanaoka S., Takahashi M., Watanabe A.	Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don).	BMC Genomics	19(1)	277	2018		
45639	29676468	Ellsworth P.V., Ellsworth P.Z., Koteyeva N.K., Cousins A.B.	Cell wall properties in Oryza sativa influence mesophyll CO2 conductance.	New Phytol.	219(1)	66-76	2018		
45640	29687350	Moon S., Oo M.M., Kim B., Koh H.J., Oh S.A., Yi G., An G., Park S.K., Jung K.H.	Genome-wide analyses of late pollen-preferred genes conserved in various rice cultivars and functional identification of a gene involved in the key processes of late pollen development.	Rice (N Y)	11(1)	28	2018		
45641	29630984	Singh P.K., Ray S., Thakur S., Rathour R., Sharma V., Sharma T.R.	Co-evolutionary interactions between host resistance and pathogen avirulence genes in rice-Magnaporthe oryzae pathosystem.	Fungal Genet. Biol.	115	9-19	2018		
45642	29697740	Negri T.D.C., Alves W.A.L., Bugatti P.H., Saito P.T.M., Domingues D.S., Paschoal A.R.	Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants.	Brief. Bioinformatics			2018		
45643	29675645	Qi L., Ding Y., Zheng X., Xu R., Zhang L., Wang Y., Wang X., Zhang L., Cheng Y., Qiao W., Yang Q.	Fine mapping and identification of a novel locus qGL12.2 control grain length in wild rice (Oryza rufipogon Griff.).	Theor. Appl. Genet.	131(7)	1497-1508	2018		
45644	29630662	Zhu Y., Sun H., He S., Lou Q., Yu M., Tang M., Tu L.	Metabolism and prebiotics activity of anthocyanins from black rice (Oryza sativa L.) in vitro.	PLoS ONE	13(4)	e0195754	2018		
45645	29365172	Yao R., Wang L., Li Y., Chen L., Li S., Du X., Wang B., Yan J., Li J., Xie D.	Rice DWARF14 acts as an unconventional hormone receptor for strigolactone.	J. Exp. Bot.	69(9)	2355-2365	2018		
45646	29652796	Liu X., Li J., Xu L., Wang Q., Lou Y.	Expressing <i>OsMPK4</i> Impairs Plant Growth but Enhances the Resistance of Rice to the Striped Stem Borer <i>Chilo suppressalis</i>.	Int J Mol Sci	19(4)		2018		
45647	29633975	Guo L., Zhang Y., Ma M., Liu Q., Zhang Y., Peng Y., Liu J.	Crystallization of the rice immune receptor RGA5A_S with the rice blast fungus effector AVR1-CO39 prepared via mixture and tandem strategies.	Acta Crystallogr F Struct Biol Commun	74(Pt 4)	262-267	2018		
45648	29537667	Hu M., Lv S., Wu W., Fu Y., Liu F., Wang B., Li W., Gu P., Cai H., Sun C., Zhu Z.	The domestication of plant architecture in African rice.	Plant J.	94(4)	661-669	2018		
45649	29686690	Ndjiondjop M.N., Semagn K., Sow M., Manneh B., Gouda A.C., Kpeki S.B., Pegalepo E., Wambugu P., Si? M., Warburton M.L.	Assessment of Genetic Variation and Population Structure of Diverse Rice Genotypes Adapted to Lowland and Upland Ecologies in Africa Using SNPs.	Front Plant Sci	9	446	2018		
45650	29637263	Sowadan O., Li D., Zhang Y., Zhu S., Hu X., Bhanbhro L.B., Edzesi W.M., Dang X., Hong D.	Mining of favorable alleles for lodging resistance traits in rice (oryza sativa) through association mapping.	Planta	248(1)	155-169	2018		
45651	29706137	Wei G., Liu K., Shen T., Shi J., Liu B., Han M., Peng M., Fu H., Song Y., Zhu J., Dong A., Ni T.	Position-specific intron retention is mediated by the histone methyltransferase SDG725.	BMC Biol.	16(1)	44	2018		
45652	29570873	Itoh H., Wada K.C., Sakai H., Shibasaki K., Fukuoka S., Wu J., Yonemaru J.I., Yano M., Izawa T.	Genomic adaptation of flowering-time genes during the expansion of rice cultivation area.	Plant J.	94(5)	895-909	2018		
45653	29681763	Tan Y., Sun X., Fang B., Yu D., Sun Z., Wang W., Sheng X., Yin X., Liu L., Zhang Y., Duan M., Yuan D.	Conversion of a rice CMS maintainer into a photo- or thermo-sensitive genetic male sterile line.	Mol. Breed.	38(5)	56	2018		
45654	29604166	Zhu X.F., Yuan P., Zhang C., Li T.Y., Xuan Y.H.	RAVL1, an upstream component of brassinosteroid signalling and biosynthesis, regulates ethylene signalling via activation of EIL1 in rice.	Plant Biotechnol. J.	16(8)	1399-1401	2018	D2,_,_,D61,ERS1,EIN2	d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,RAVL1, RAVL ,EIL1, OsEIL1, MHZ6/OsEIL1, MHZ6,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 
45655	29758379	Bertazzini M., Sacchi G.A., Forlani G.	A differential tolerance to mild salt stress conditions among six Italian rice genotypes does not rely on Na+ exclusion from shoots.	J. Plant Physiol.	226	145-153	2018		
45656	29538660	Haider I., Andreo-Jimenez B., Bruno M., Bimbo A., Flokov? K., Abuauf H., Ntui V.O., Guo X., Charnikhova T., Al-Babili S., Bouwmeester H.J., Ruyter-Spira C.	The interaction of strigolactones with abscisic acid during the drought response in rice.	J. Exp. Bot.	69(9)	2403-2414	2018		
45657	29740456	Prusty M.R., Kim S.R., Vinarao R., Entila F., Egdane J., Diaz M.G.Q., Jena K.K.	Newly Identified Wild Rice Accessions Conferring High salt tolerance Might Use a Tissue Tolerance Mechanism in Leaf.	Front Plant Sci	9	417	2018		
45658	29695083	Zhou P., Mo X., Wang W., Chen X., Lou Y.	The Commonly Used Bactericide Bismerthiazol Promotes Rice Defenses against Herbivores.	Int J Mol Sci	19(5)		2018		
45659	29671830	Gianinetti A., Finocchiaro F., Bagnaresi P., Zechini A., Faccioli P., Cattivelli L., Val? G., Biselli C.	seed dormancy Involves a Transcriptional Program That Supports Early Plastid Functionality during Imbibition.	Plants (Basel)	7(2)		2018		
45660	29520969	Dissanayaka DMSB., Plaxton W.C., Lambers H., Siebers M., Marambe B., Wasaki J.	Molecular mechanisms underpinning phosphorus-use efficiency in rice.	Plant Cell Environ.	41(7)	1483-1496	2018		
45661	29671092	Mulsanti I.W., Yamamoto T., Ueda T., Samadi A.F., Kamahora E., Rumanti I.A., Thanh V.C., Adachi S., Suzuki S., Kanekatsu M., Hirasawa T., Ookawa T.	Finding the superior allele of japonica-type for increasing stem lodging resistance in indica rice varieties using chromosome segment substitution lines.	Rice (N Y)	11(1)	25	2018		
45662	29965018	Gu J.F., Zhou H., Jia R.Y., Wang Q.Q., Li H.C., Zhang P., Peng P.Q., Liao B.H.	[Effects of a Tribasic Amendment on Cadmium and Arsenic Accumulation and Translocation in Rice in a Field Experiment].	Huan Jing Ke Xue	39(4)	1910-1917	2018		
45663	29161206	Phan N.T., De Waele D., Lorieux M., Xiong L., Bellafiore S.	A Hypersensitivity-Like Response to Meloidogyne graminicola in Rice (Oryza sativa).	Phytopathology	108(4)	521-528	2018		
45664	29725341	Mager S., Ludewig U.	Massive Loss of DNA Methylation in Nitrogen-, but Not in Phosphorus-Deficient <i>Zea mays</i> Roots Is Poorly Correlated With Gene Expression Differences.	Front Plant Sci	9	497	2018		
45665	29692789	Husaini A.M., Sohail M.	Time to Redefine Organic Agriculture: Can't GM Crops Be Certified as Organics?	Front Plant Sci	9	423	2018		
45666	29629486	Kobayashi A., Hori K., Yamamoto T., Yano M.	Koshihikari: a premium short-grain rice cultivar - its expansion and breeding in Japan.	Rice (N Y)	11(1)	15	2018		
45667	29655154	Anupama A., Bhugra S., Lall B., Chaudhury S., Chugh A.	Assessing the correlation of genotypic and phenotypic responses of indica rice varieties under drought stress.	Plant Physiol. Biochem.	127	343-354	2018		
45668	29642546	Akhter D., Qin R., Nath U.K., Alamin M., Jin X., Shi C.	The Brown Midrib Leaf (bml) Mutation in Rice (Oryza sativa L.) Causes Premature leaf senescence and the Induction of Defense Responses.	Genes (Basel)	9(4)		2018		
45669	29875608	Zhang Y., Zhou J., Li J., Yang Y., Xu P., Tao D.	Mapping of <i>S56</i>(t) responsible for interspecific hybrid sterility between <i>Oryza sativa</i> and <i>Oryza glumaepatula</i>.	Breed. Sci.	68(2)	242-247	2018		
45670	29330900	Pan J., Huang D., Guo Z., Kuang Z., Zhang H., Xie X., Ma Z., Gao S., Lerdau M.T., Chu C., Li L.	Overexpression of microRNA408 enhances photosynthesis, growth, and seed yield in diverse plants.	J Integr Plant Biol	60(4)	323-340	2018		
45671	30065932	Nevame A.Y.M., Emon R.M., Malek M.A., Hasan M.M., Alam M.A., Muharam F.M., Aslani F., Rafii M.Y., Ismail M.R.	Relationship between High Temperature and Formation of Chalkiness and Their Effects on Quality of Rice.	Biomed Res Int	2018	1653721	2018		
45672	29761327	Wada S., Suzuki Y., Takagi D., Miyake C., Makino A.	Effects of genetic manipulation of the activity of photorespiration on the redox state of photosystem I and its robustness against excess light stress under CO2-limited conditions in rice.	Photosyn. Res.			2018		
45673	29704881	Wakasa Y., Kawakatsu T., Harada T., Takaiwa F.	Transgene-independent heredity of RdDM-mediated transcriptional gene silencing of endogenous genes in rice.	Plant Biotechnol. J.	16(12)	2007-2015	2018		
45674	29604140	Hong Y., Yuan S., Sun L., Wang X., Hong Y.	Cytidinediphosphate-diacylglycerol synthase 5 is required for phospholipid homeostasis and is negatively involved in hyperosmotic stress tolerance.	Plant J.	94(6)	1038-1050	2018	RAB16C,CML31,CDS3,_,CDS1,BZIP23,CDS4,CDS2,CDS5	rab21, OsLEA27, rab16C,OsCML31, OsMSR2, MSR2,OsCDS3,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsCDS1,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsCDS4,OsCDS2,OsCDS5
45675	29855556	Boddupally D., Tamirisa S., Gundra S.R., Vudem D.R., Khareedu V.R.	Expression of hybrid fusion protein (Cry1Ac::ASAL) in transgenic rice plants imparts resistance against multiple insect pests.	Sci Rep	8(1)	8458	2018		
45676	29855701	Liu H., Ren X., Zhu J., Wu X., Liang C.	Effect of exogenous abscisic acid on morphology, growth and nutrient uptake of rice (Oryza sativa) roots under simulated acid rain stress.	Planta	248(3)	647-659	2018		
45677	29875779	Sun H., Feng F., Liu J., Zhao Q.	Nitric Oxide Affects Rice Root Growth by Regulating Auxin Transport Under Nitrate Supply.	Front Plant Sci	9	659	2018		
45678	29792165	Taneja M., Upadhyay S.K.	Molecular characterization and differential expression suggested diverse functions of P-type II Ca2+ATPases in Triticum aestivum L.	BMC Genomics	19(1)	389	2018		
45679	30150871	Panda D., Mahakhud A., Mohanty B., Mishra S.S., Barik J.	Genotypic variation of photosynthetic gas exchange and stomatal traits in some traditional rice (<i>Oryza sativa</i> L.) landraces from Koraput, India for crop improvement.	Physiol Mol Biol Plants	24(5)	973-983	2018		
45680	29740721	Singh V., Singh A.P., Bhadoria J., Giri J., Singh J., T V V., Sharma P.C.	Differential expression of salt-responsive genes to salinity stress in salt-tolerant and salt-sensitive rice (Oryza sativa L.) at seedling stage.	Protoplasma			2018		
45681	29846871	Fukayama H., Mizumoto A., Ueguchi C., Katsunuma J., Morita R., Sasayama D., Hatanaka T., Azuma T.	Expression level of Rubisco activase negatively correlates with Rubisco content in transgenic rice.	Photosyn. Res.	137(3)	465-474	2018		
45682	29844229	Johnson C., Conrad L.J., Patel R., Anderson S., Li C., Pereira A., Sundaresan V.	Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression.	Plant Physiol.	177(3)	1198-1217	2018		
45683	29718936	Islam M.Z., Khalequzzaman M., Prince MFRK., Siddique M.A., Rashid ESMH., Ahmed M.S.U., Pittendrigh B.R., Ali M.P.	Diversity and population structure of red rice germplasm in Bangladesh.	PLoS ONE	13(5)	e0196096	2018		
45684	29660196	Dong Q., Li N., Li X., Yuan Z., Xie D., Wang X., Li J., Yu Y., Wang J., Ding B., Zhang Z., Li C., Bian Y., Zhang A., Wu Y., Liu B., Gong L.	Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice.	Plant J.	94(6)	1141-1156	2018		
45685	29717019	Long W., Wang Y., Zhu S., Jing W., Wang Y., Ren Y., Tian Y., Liu S., Liu X., Chen L., Wang D., Zhong M., Zhang Y., Hu T., Zhu J., Hao Y., Zhu X., Zhang W., Wang C., Zhang W., Wan J.	FLOURY shrunken endosperm1 Connects Phospholipid Metabolism and Amyloplast Development in Rice.	Plant Physiol.	177(2)	698-712	2018	AGPS2,FLO5,SSIVB,AGPL2,AGPL3,SBE1,FSE1,PUL,SBE3,ISA2,AGPS1,SSI,WX1,ALK,ISA1	OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsSSIIIa, SSIII-2, SS3A, SS3a, OsSSSIIIa, SSIIIa, Flo5,OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1,sbe1, Rbe1. Sbe1, sbe1*(QEI), RBE1, BEI, SBE I, QEI, OsBEI, BE1,,OsPUL, SDBE, OsPUL3, RE,SBEIII*, SBEIII, Sbe3, RBE3, QEIIa, QEIIA, BEIIb, BEIIB, SBEIIb, OsBEIIb, sbe3, SBE III, OsSBEIIb, SBEIIb,OsISA2,OsAGPS1, APS1, OsAPS1, AGPsma,OsSSI, SSS 1, SSS1, SS1,wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx,alk, SSII-3, OsSSIIa, OsSSII-3, SSIIa, SSS2A, OsSSIIaChr6, SS2a,OsISA1, ISA, OsISA, PHS8, PHS8/ISA1
45686	29868069	Chen P., Shen Z., Ming L., Li Y., Dan W., Lou G., Peng B., Wu B., Li Y., Zhao D., Gao G., Zhang Q., Xiao J., Li X., Wang G., He Y.	Genetic Basis of Variation in Rice Seed Storage Protein (Albumin, Globulin, Prolamin, and Glutelin) Content Revealed by Genome-Wide Association Analysis.	Front Plant Sci	9	612	2018		
45687	29603552	Lincoln J.E., Sanchez J.P., Zumstein K., Gilchrist D.G.	Plant and animal PR1 family members inhibit programmed cell death and suppress bacterial pathogens in plant tissues.	Mol. Plant Pathol.	19(9)	2111-2123	2018		
45688	29774046	Byun M.Y., Cui L.H., Lee J., Park H., Lee A., Kim W.T., Lee H.	Identification of Rice Genes Associated With Enhanced cold tolerance by Comparative Transcriptome Analysis With Two Transgenic Rice Plants Overexpressing <i>DaCBF4</i> or <i>DaCBF7</i>, Isolated From Antarctic Flowering Plant <i>Deschampsia antarctica</i>.	Front Plant Sci	9	601	2018		
45689	29965549	Li Y.Q., Sun T., Deng H., Zhang C., Wang Y.M., Wang D.Y.	[Characteristics of Mercury Transformation in Soil and Accumulation in Rice Plants in an Acidic Purple Paddy Soil Area].	Huan Jing Ke Xue	39(5)	2472-2479	2018		
45690	29800928	Hou D., Wang R., Gao X., Wang K., Lin Z., Ge J., Liu T., Wei S., Chen W., Xie R., Yang X., Lu L., Tian S.	Cultivar-specific response of bacterial community to cadmium contamination in the rhizosphere of rice (Oryza sativa L.).	Environ. Pollut.	241	63-73	2018		
45691	29744607	Chang K., Wang Q., Shi X., Wang S., Wu H., Nie L., Li H.	Stepwise partially overlapping primer-based PCR for genome walking.	AMB Express	8(1)	77	2018		
45692	29575650	Li J., Zhang X., Sun Y., Zhang J., Du W., Guo X., Li S., Zhao Y., Xia L.	Efficient allelic replacement in rice by gene editing: A case study of the NRT1.1B gene.	J Integr Plant Biol	60(7)	536-540	2018		
45693	29989091	Jiang J., Xing F., Zeng X., Zou Q.	RicyerDB: A Database For Collecting Rice Yield-related Genes with Biological Analysis.	Int. J. Biol. Sci.	14(8)	965-970	2018		
45694	29757987	Anis G.B., Zhang Y., Wang H., Li Z., Wu W., Sun L., Riaz A., Cao L., Cheng S.	Genomic Regions Analysis of Seedling Root Traits and Their Regulation in Responses to Phosphorus Deficiency Tolerance in CSSL Population of Elite Super Hybrid Rice.	Int J Mol Sci	19(5)		2018		
45695	29562362	Kishi-Kaboshi M., Seo S., Takahashi A., Hirochika H.	The MAMP-Responsive MYB Transcription Factors MYB30, MYB55 and MYB110 Activate the HCAA Synthesis Pathway and Enhance Immunity in Rice.	Plant Cell Physiol.	59(5)	903-915	2018	PPAAT,_,ROMT9,_,_,4CL3,PAL1,_,_,_,_,HCT2,_,EPSPS,CCR20,_,_,_,SMG1,_,_	OsPPA-AT, PPA-AT,CM, OsCM,COMT, OsCOMT, ROMT-9, OsCOMT1, OsCAldOMT1, CAldOMT1, OsOMT,OsMyb9, OsMyb8, OsMYB110, Myb9, Myb8, MYB110,CS, OsCS,Os4CL3, Os4CL2, Os4CL, 4CL2, 4CL,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsSK2, SK2,C3H1, C3'H, OsC3H1, OsC3'H,C4H1, OsC4H1, OsC4H, C4H,DHQDT/SDH, OsDHQDT/SDH, OsDHQDT, OsSDH, DHQDT, SDH, DHQ/SDH-1,OsHCT2, HCT,ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1,EPSPs,OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 ,OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8,OsADT, ADT,OsMYB30, MYB30, OsMYB5P, MYB5P,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsDAHP1, DAHP1, DAHPS, OsDAHPS2, DAHPS2,DHQS, OsDHQS
45696	29633905	Gupta M.K., Vadde R., Donde R., Gouda G., Kumar J., Nayak S., Jena M., Behera L.	Insights into the structure-function relationship of brown plant hopper resistance protein, Bph14 of rice plant: a computational structural biology approach.	J. Biomol. Struct. Dyn.		1-17	2018		
45697	29855560	Hu J., Zeng T., Xia Q., Qian Q., Yang C., Ding Y., Chen L., Wang W.	Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model.	Sci Rep	8(1)	8498	2018		
45698	29744589	Wang H., Mo Y.J., Im D.E., Jang S.G., Ham T.H., Lee J., Jeung J.U., Kwon S.W.	A new SNP in cyOsPPDK gene is associated with floury endosperm in Suweon 542.	Mol. Genet. Genomics			2018	FLO4	FLO4-4, flo4, flo4-2, flo4-3, ppdk, OsPPDK, PPDK1, CPDK1, PPDKB, OsPPDKB, cyOsPPDKB, OsPBDK, PBDK, osppdkb, PPD
45699	29746484	Yang X., Xia X., Zeng Y., Nong B., Zhang Z., Wu Y., Xiong F., Zhang Y., Liang H., Deng G., Li D.	Identification of candidate genes for gelatinization temperature, gel consistency and pericarp color by GWAS in rice based on SLAF-sequencing.	PLoS ONE	13(5)	e0196690	2018		
45700	29795191	Zhao H., Wang X., Jia Y., Minkenberg B., Wheatley M., Fan J., Jia M.H., Famoso A., Edwards J.D., Wamishe Y., Valent B., Wang G.L., Yang Y.	The rice blast resistance gene Ptr encodes an atypical protein required for broad-spectrum disease resistance.	Nat Commun	9(1)	2039	2018		
45701	29566164	Qin P., Fan S., Deng L., Zhong G., Zhang S., Li M., Chen W., Wang G., Tu B., Wang Y., Chen X., Ma B., Li S.	lml1, Encoding a Conserved eukaryotic release factor 1 Protein, Regulates Cell Death and Pathogen Resistance by Forming a Conserved Complex with SPL33 in Rice.	Plant Cell Physiol.	59(5)	887-902	2018	SPL33,PR1B,NAC4,PAL1,SPLHM47,_,PR10A	LMM5.1, SPL33/LMM5.1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
45702	29760197	Ishikawa T., Fang L., Rennie E.A., Sechet J., Yan J., Jing B., Moore W., Cahoon E.B., Scheller H.V., Kawai-Yamada M., Mortimer J.C.	GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase.	Plant Physiol.	177(3)	938-952	2018	GMT1,GINT2,GINT1	OsGMT1,OsGINT2,OsGINT1
45703	29725160	Radanielson A.M., Angeles O., Li T., Ismail A.M., Gaydon D.S.	Describing the physiological responses of different rice genotypes to salt stress using sigmoid and piecewise linear functions.	Field Crops Res.	220	46-56	2018		
45704	29723918	Liang Z., Chen K., Yan Y., Zhang Y., Gao C.	Genotyping genome-edited mutations in plants using CRISPR ribonucleoprotein complexes.	Plant Biotechnol. J.	16(12)	2053-2062	2018		
45705	29734523	Wu T.Y., Gruissem W., Bhullar N.K.	Targeting intracellular transport combined with efficient uptake and storage significantly increases grain iron and zinc levels in rice.	Plant Biotechnol. J.			2018		
45706	29730773	Zhang J., Zhao W., Fu R., Fu C., Wang L., Liu H., Li S., Deng Q., Wang S., Zhu J., Liang Y., Li P., Zheng A.	Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection.	Funct. Integr. Genomics	18(5)	545-557	2018		
45707	30135718	Kumar A., Pandeya A., Malik G., Sharma M., P HK., S AK., Gahlaut V., Gajula MNVP., Singh K.P., Suravajhala P., Balyan H.S., Gupta P.K.	<b>---</b>A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants.	F1000Res	7		2018		
45708	30119729	Xiao H.M., Cai W.J., Ye T.T., Ding J., Feng Y.Q.	Spatio-temporal profiling of abscisic acid, indoleacetic acid and jasmonic acid in single rice seed during seed germination.	Anal. Chim. Acta	1031	119-127	2018		
45709	29933987	Yu L., Wang W., Zeng S., Chen Z., Yang A., Shi J., Zhao X., Song B.	Label-free quantitative proteomics analysis of Cytosinpeptidemycin responses in southern rice black-streaked dwarf virus-infected rice.	Pestic Biochem Physiol	147	20-26	2018		
45710	29766507	Rezaul I.M., Baohua F., Tingting C., Weimeng F., Caixia Z., Longxing T., Guanfu F.	Abscisic acid prevents pollen abortion under high-temperature stress by mediating sugar metabolism in rice spikelets.	Physiol Plant			2018		
45711	29728590	Bajgain P., Russell B., Mohammadi M.	Phylogenetic analyses and in-seedling expression of ammonium and nitrate transporters in wheat.	Sci Rep	8(1)	7082	2018		
45712	29725159	Torres R.O., Henry A.	Yield stability of selected rice breeding lines and donors across conditions of mild to moderately severe drought stress.	Field Crops Res.	220	37-45	2018		
45713	29549093	Zhang X., Bao Y., Shan D., Wang Z., Song X., Wang Z., Wang J., He L., Wu L., Zhang Z., Niu D., Jin H., Zhao H.	<i>Magnaporthe oryzae</i> Induces the Expression of a MicroRNA to Suppress the Immune Response in Rice.	Plant Physiol.	177(1)	352-368	2018		
45714	29799607	Saddique M.A.B., Ali Z., Khan A.S., Rana I.A., Shamsi I.H.	Inoculation with the endophyte Piriformospora indica significantly affects mechanisms involved in osmotic stress in rice.	Rice (N Y)	11(1)	34	2018		
45715	29432551	Huang L., Zhang M., Jia J., Zhao X., Huang X., Ji E., Ni L., Jiang M.	An Atypical Late Embryogenesis Abundant Protein OsLEA5 Plays a Positive Role in ABA-Induced Antioxidant Defense in Oryza sativa L.	Plant Cell Physiol.	59(5)	916-929	2018	SODCC1,BSRD1,APX2,ABA8OX2,LEA3-1,CATB,NCED1,_,_,RAB16A,RAB16B,RBOHE,LEA8,RBOHB	sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,ZFP36, OsZFP36, OsBSRD1, Bsr-d1, bsr-d1 ,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OSNCED1, OsNCED-1, OsNCED3, OsNced3, NCED3 ,5C300,5C700,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,rab21, OsLEA28, OsRAB16D, OsRAB16b,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,OsLEA8, OsLEA8a, OsLEA8b, OsLEA5, LEA5,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB 
45716	29725869	Murakami T., Kazama T., Toriyama K.	Genetic analysis of male sterility obtained from a rice cultivar Lebed backcrossed with Taichung 65.	Rice (N Y)	11(1)	30	2018		
45717	29813124	Yugander A., Sundaram R.M., Singh K., Ladhalakshmi D., Subba Rao LV., Madhav M.S., Badri J., Prasad M.S., Laha G.S.	Incorporation of the novel bacterial blight resistance gene Xa38 into the genetic background of elite rice variety Improved Samba Mahsuri.	PLoS ONE	13(5)	e0198260	2018		
45718	29775612	Wang X., Guan Z., Gong Z., Yan J., Yang G., Liu Y.G., Yin P.	Crystal structure of WA352 provides insight into cytoplasmic male sterility in rice.	Biochem. Biophys. Res. Commun.	501(4)	898-904	2018		
45719	29868097	Miura S., Crofts N., Saito Y., Hosaka Y., Oitome N.F., Watanabe T., Kumamaru T., Fujita N.	Starch synthase IIa-Deficient Mutant Rice Line Produces Endosperm Starch With Lower gelatinization temperature Than Japonica Rice Cultivars.	Front Plant Sci	9	645	2018		
45720	29797870	Ren Y.W., Xiao M.L., Yuan H.C., Zhu Z.K., Li Q.Y., Ge T.D., Su Y.R., Wu J.S.	[Allocation of rice photosynthates in plant-soil system in response to elevated CO2 and nitrogen fertilization.]	Ying Yong Sheng Tai Xue Bao	29(5)	1397-1404	2018		
45721	29796899	Haeck A., Van Langenhove H., Harinck L., Kyndt T., Gheysen G., H?fte M., Demeestere K.	Trace analysis of multi-class phytohormones in Oryza sativa using different scan modes in high-resolution Orbitrap mass spectrometry: method validation, concentration levels, and screening in multiple accessions.	Anal Bioanal Chem	410(18)	4527-4539	2018		
45722	29766351	Yamamoto N., Garcia R., Suzuki T., Solis C.A., Tada Y., Venuprasad R., Kohli A.	Comparative whole genome re-sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions.	Rice (N Y)	11(1)	33	2018		
45723	29783097	Kumar M.S.S., Mawlong I., Ali K., Tyagi A.	Regulation of phytosterol biosynthetic pathway during drought stress in rice.	Plant Physiol. Biochem.	129	11-20	2018		
45724	30080596	Liang Y., Zhao X., Jones A.M., Gao Y.	G proteins sculp root architecture in response to nitrogen in rice and Arabidopsis.	Plant Sci.	274	129-136	2018		
45725	29744285	Grechkin A.N., Ogorodnikova A.V., Egorova A.M., Mukhitova F.K., Ilyina T.M., Khairutdinov B.I.	allene oxide synthase Pathway in Cereal Roots: Detection of Novel Oxylipin Graminoxins.	ChemistryOpen	7(5)	336-343	2018		
45726	29845495	Kumar A., Sandhu N., Dixit S., Yadav S., Swamy B.P.M., Shamsudin N.A.A.	Marker-assisted selection strategy to pyramid two or more QTLs for quantitative trait-grain yield under drought.	Rice (N Y)	11(1)	35	2018		
45727	29965548	Wang B.X., Wang X.D., Duan G.L.	[Screening and Identification of Arsenic-resistant Endophytic Bacteria from Different Rice Tissues (<i>Oryza sativa</i> L.) in Different Growth Stages].	Huan Jing Ke Xue	39(5)	2464-2471	2018		
45728	29857174	He Y., Zhu M., Wang L., Wu J., Wang Q., Wang R., Zhao Y.	Programmed Self-Elimination of the CRISPR/Cas9 Construct Greatly Accelerates the Isolation of Edited and Transgene-Free Rice Plants.	Mol Plant	11(9)	1210-1213	2018		
45729	29567450	Ying J.Z., Ma M., Bai C., Huang X.H., Liu J.L., Fan Y.Y., Song X.J.	TGW3, a Major QTL that Negatively Modulates Grain Length and Weight in Rice.	Mol Plant	11(5)	750-753	2018	_	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, TGW3, OsGSK5/OsSK41, OsSK41/OsGSK5
45730	29868071	Zhou B., Zeng L.	The Tomato U-Box Type E3 Ligase PUB13 Acts With Group III Ubiquitin E2 Enzymes to Modulate FLS2-Mediated Immune Signaling.	Front Plant Sci	9	615	2018		
45731	29761034	Thomas N.C., Oksenberg N., Liu F., Caddell D., Nalyvayko A., Nguyen Y., Schwessinger B., Ronald P.C.	The rice XA21 ectodomain fused to the Arabidopsis EFR cytoplasmic domain confers resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	PeerJ	6	e4456	2018		
45732	29581178	Li G., Yang X., Zhang X., Song Y., Liang W., Zhang D.	Rice Morphology Determinant-Mediated actin filament Organization Contributes to pollen Tube Growth.	Plant Physiol.	177(1)	255-270	2018		
45733	29753827	Huang Q., Liu Q., Lin L., Li F.J., Han Y., Song Z.G.	Reduction of arsenic toxicity in two rice cultivar seedlings by different nanoparticles.	Ecotoxicol. Environ. Saf.	159	261-271	2018		
45734	29872748	Manu M.S., Ghosh D., Chaudhari B.P., Ramasamy S.	Analysis of Tail-anchored protein translocation pathway in plants.	Biochem Biophys Rep	14	161-167	2018	_,_,_,_,_	Get4,Get1,Get3,Get3,Get3
45735	29783938	Panda B.B., Sekhar S., Dash S.K., Behera L., Shaw B.P.	Biochemical and molecular characterisation of exogenous cytokinin application on grain filling in rice.	BMC Plant Biol.	18(1)	89	2018		
45736	29735983	Lu H.P., Luo T., Fu H.W., Wang L., Tan Y.Y., Huang J.Z., Wang Q., Ye G.Y., Gatehouse A.M.R., Lou Y.G., Shu Q.Y.	Resistance of rice to insect pests mediated by suppression of serotonin biosynthesis.	Nat Plants	4(6)	338-344	2018	ASB1,SL,PAL1,ASA2,_,_	OASB1, OsASbeta1, ASbeta1,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OASA2 (=ASA2), OsASA2, OASA2, ASalpha2, OsASalpha2,PAD4, OsPAD4,ICS1, OsICS1, OsICS, ICS
45737	29807545	Li C., Zong Y., Wang Y., Jin S., Zhang D., Song Q., Zhang R., Gao C.	Expanded base editing in rice and wheat using a Cas9-adenosine deaminase fusion.	Genome Biol.	19(1)	59	2018		
45738	29757203	Muhammad I., Jing X.Q., Shalmani A., Ali M., Yi S., Gan P.F., Li W.Q., Liu W.T., Chen K.M.	Comparative in Silico Analysis of Ferric Reduction Oxidase (FRO) Genes Expression Patterns in Response to Abiotic Stresses, Metal and Hormone Applications.	Molecules	23(5)		2018		
45739	29789516	Ravichanthiran K., Ma Z.F., Zhang H., Cao Y., Wang C.W., Muhammad S., Aglago E.K., Zhang Y., Jin Y., Pan B.	Phytochemical Profile of Brown Rice and Its Nutrigenomic Implications.	Antioxidants (Basel)	7(6)		2018		
45740	29846801	Abreu F.R.M., Dedicova B., Vianello R.P., Lanna A.C., de Oliveira JAV., Vieira A.F., Morais O.P., Mendon?a JA., Brondani C.	Overexpression of a phospholipase (OsPLDalpha1) for drought tolerance in upland rice (Oryza sativa L.).	Protoplasma	255(6)	1751-1761	2018		
45741	29764927	Xiao N., Gao Y., Qian H., Gao Q., Wu Y., Zhang D., Zhang X., Yu L., Li Y., Pan C., Liu G., Zhou C., Jiang M., Huang N., Dai Z., Liang C., Chen Z., Chen J., Li A.	Identification of Genes Related to cold tolerance and a Functional Allele That Confers cold tolerance.	Plant Physiol.	177(3)	1108-1123	2018	SKIN1,_,SAPK10,EBL1,EBL2,_,RLCK127	OsSKIN1, OsO3L8, O3L8,qPSR10,OsSAPK10,qSSR8, OsEBL1,OsEBL2,qSSR9-1,OsRLCK127, CTB4a, qCTB4-1
45742	29567448	Xia D., Zhou H., Liu R., Dan W., Li P., Wu B., Chen J., Wang L., Gao G., Zhang Q., He Y.	GL3.3, a Novel QTL Encoding a GSK3/SHAGGY-like Kinase, Epistatically Interacts with GS3 to Produce Extra-long Grains in Rice.	Mol Plant	11(5)	754-756	2018		
45743	29555785	Hang R., Wang Z., Deng X., Liu C., Yan B., Yang C., Song X., Mo B., Cao X.	Ribosomal RNA Biogenesis and Its Response to Chilling Stress in <i>Oryza sativa</i>.	Plant Physiol.	177(1)	381-397	2018		
45744	29896209	Hao P.Y., Feng Y.L., Zhou Y.S., Song X.M., Li H.L., Ma Y., Ye C.L., Yu X.P.	Schaftoside Interacts With NlCDK1 Protein: A Mechanism of Rice Resistance to Brown Planthopper, <i>Nilaparvata lugens</i>.	Front Plant Sci	9	710	2018		
45745	29780402	Vergara C., Araujo K.E.C., Urquiaga S., Santa-Catarina C., Schultz N., da Silva Ara?jo E., de Carvalho Balieiro F., Xavier G.R., Zilli J?.	Dark Septate Endophytic Fungi Increase Green Manure-15N Recovery Efficiency, N Contents, and Micronutrients in Rice Grains.	Front Plant Sci	9	613	2018		
45746	29625654	Mitra S., Pramanik K., Ghosh P.K., Soren T., Sarkar A., Dey R.S., Pandey S., Maiti T.K.	Characterization of Cd-resistant Klebsiella michiganensis MCC3089 and its potential for rice seedling growth promotion under Cd stress.	Microbiol. Res.	210	12-25	2018		
45747	30080640	Kaushal R., Ghosh P.	Oxygen isotope enrichment in rice (Oryza sativa L.) grain organic matter captures signature of relative humidity.	Plant Sci.	274	503-513	2018		
45748	29664146	Herzog M., Fukao T., Winkel A., Konnerup D., Lamichhane S., Alpuerto J.B., Hasler-Sheetal H., Pedersen O.	Physiology, gene expression, and metabolome of two wheat cultivars with contrasting submergence tolerance.	Plant Cell Environ.	41(7)	1632-1644	2018		
45749	29718005	Hu Z., Wang W., Wu Z., Sun C., Li M., Lu J., Fu B., Shi J., Xu J., Ruan J., Wei C., Li Z.	Novel sequences, structural variations and gene presence variations of Asian cultivated rice.	Sci Data	5	180079	2018		
45750	29844344	Ferrari S., Pagliari P., Trettel J.	Optimum Sowing Date and Genotype Testing for Upland Rice Production in Brazil.	Sci Rep	8(1)	8227	2018		
45751	29792958	He M., Qiu C., Liao Z., Sui Z., Corke H.	Impact of cooking conditions on the properties of rice: Combined temperature and cooking time.	Int. J. Biol. Macromol.	117	87-94	2018		
45752	29748895	Xu Y., Wang X., Ding X., Zheng X., Yang Z., Xu C., Hu Z.	Genomic selection of agronomic traits in hybrid rice using an NCII population.	Rice (N Y)	11(1)	32	2018		
45753	29872443	Li F., Xie J., Zhu X., Wang X., Zhao Y., Ma X., Zhang Z., Rashid M.A.R., Zhang Z., Zhi L., Zhang S., Li J., Li Z., Zhang H.	Genetic Basis Underlying Correlations Among Growth Duration and Yield Traits Revealed by GWAS in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	650	2018		
45754	29774045	Cho J.	Transposon-Derived Non-coding RNAs and Their Function in Plants.	Front Plant Sci	9	600	2018		
45755	29929129	Fu Y., Yang X., Shen H.	Root iron plaque alleviates cadmium toxicity to rice (Oryza sativa) seedlings.	Ecotoxicol. Environ. Saf.	161	534-541	2018		
45756	29970347	Meng Q., Gupta R., Min C.W., Kim J., Kramer K., Wang Y., Park S.R., Finkemeier I., Kim S.T.	A proteomic insight into the MSP1 and flg22 induced signaling in Oryza sativa leaves.	J Proteomics			2018		
45757	29888411	Che J., Tsutsui T., Yokosho K., Yamaji N., Ma J.F.	Functional characterization of an aluminum (Al)-inducible transcription factor, ART2, revealed a different pathway for Al tolerance in rice.	New Phytol.	220(1)	209-218	2018	ALPHACA5,_,MDR7,_,_,ART2,LAC3,ART1,CDT3	OsalphaCA5, alphaCA5,OsFRDL4, FRDL4, MATE,MDR4, OsABCB5, ABCB5, OsPGP5, OsMDR7, OsISC28, MRP4, OsABCB11, ABCB11,Os4NPP1, 4NPP1,,OsART2,OsChI1, ChI1, OsLAC3,ART1, STAR3,OsCDT3
45758	30172313	Chatterjee P., Samaddar S., Niinemets ?., Sa T.M.	Brevibacterium linens RS16 confers salt tolerance to Oryza sativa genotypes by regulating antioxidant defense and H+ ATPase activity.	Microbiol. Res.	215	89-101	2018		
45759	29924832	Zhang W., Sun P., He Q., Shu F., Deng H.	Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice.	PLoS ONE	13(6)	e0199077	2018		
45760	29729110	Xu Z., Zhang J., Xu M., Ji W., Yu M., Tao Y., Gong Z., Gu M., Yu H.	Rice rad51 paralogs play essential roles in somatic homologous recombination for DNA repair.	Plant J.	95(2)	282-295	2018	RAD51B,RAD51C,_,_,RAD51A2,_,RAD51D,_,RAD51A1	OsRAD51B, OsRad51B,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsKu70, Ku70,XRCC2, OsXRCC2,OsRad51A2, OsRAD51,OsLig4, Lig4,OsRAD51D, OsRad51D, OsRAD51D.1, OsRAD51D.2, OsRAD51D.3,XRCC3, OsXRCC3,OsRAD51A1
45761	29864161	Tran T.T., P?rez-Quintero AL., Wonni I., Carpenter S.C.D., Yu Y., Wang L., Leach J.E., Verdier V., Cunnac S., Bogdanove A.J., Koebnik R., Hutin M., Szurek B.	Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice.	PLoS Pathog.	14(6)	e1007092	2018		
45762	29562313	Fang Zhu X., Sheng Zhao X., Wu Q., Fang Shen R.	Abscisic acid is involved in root cell wall phosphorus remobilization independent of nitric oxide and ethylene in rice (Oryza sativa).	Ann. Bot.	121(7)	1361-1368	2018		
45763	29912443	Lee H., Golicz A.A., Bayer P.E., Severn-Ellis AA., Chan C.K., Batley J., Kendrick G.A., Edwards D.	Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution.	J. Exp. Bot.	69(15)	3689-3702	2018		
45764	29983937	Zohoun E.V., Ndindeng S.A., Soumanou M.M., Tang E.N., Bigoga J., Manful J., Sanyang S., Akissoe N.H., Futakuchi K.	Appropriate parboiling steaming time at atmospheric pressure and variety to produce rice with weak digestive properties.	Food Sci Nutr	6(4)	757-764	2018		
45765	29861539	Kar I., Sudhir-Yadav, Mishra A., Behera B., Khanda C., Kumar V., Kumar A.	Productivity trade-off with different water regimes and genotypes of rice under non-puddled conditions in Eastern India.	Field Crops Res.	222	218-229	2018		
45766	29894520	Tao Y., Niu Y., Wang Y., Chen T., Naveed S.A., Zhang J., Xu J., Li Z.	Genome-wide association mapping of aluminum toxicity tolerance and fine mapping of a candidate gene for Nrat1 in rice.	PLoS ONE	13(6)	e0198589	2018		
45767	29926219	Huang B., Zhang J.M., Chen X.L., Xin X., Yin G.K., He J.J., Lu X.X., Zhou Y.C.	Oxidative damage and antioxidative indicators in 48?h germinated rice embryos during the vitrification-cryopreservation procedure.	Plant Cell Rep.			2018	APX8,APX4,APX6,CATB,CATA,DHAR1,APX7,SODCC2,_,_,SOD4,SODA1,_,CATC,SODCC1,_,APX2,APX3,FSD1.1 	OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsAPx6, OsAPx06, OSAPX6, APx6,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1,OsDHAR1, DHAR, cytDHAR, OsDHAR,OsAPx7, OsAPx07, OSAPX7, APx7, sAPX,Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,OsGR2, RGRC2, GR2, OsGR, OsGR3, OsRGRC2,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR3, MDHAR1, OsMDHAR1,OsSOD4, OsCSD4, OsCu/Zn-SOD1, Cu/Zn-SOD1, OsCSD2, CSD2, OsSOD4-Cu/Zn, SOD4-Cu/Zn, Cu/ZnSOD3, CuZnSOD3,SodA1, Mn-SOD, Mn- SOD, OsMSD, MnSOD, MnSOD1,OsGR3, GR3,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,OsGR1, GR1, OsGR2,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1
45768	29549445	Wu B., Li L., Qiu T., Zhang X., Cui S.	Cytosolic APX2 is a pleiotropic protein involved in H2O2 homeostasis, chloroplast protection, plant architecture and fertility maintenance.	Plant Cell Rep.	37(6)	833-848	2018		
45769	29907832	Hong S.H., Tripathi B.N., Chung M.S., Cho C., Lee S., Kim J.H., Bai H.W., Bae H.J., Cho J.Y., Chung B.Y., Lee S.S.	Functional switching of ascorbate peroxidase 2 of rice (OsAPX2) between peroxidase and molecular chaperone.	Sci Rep	8(1)	9171	2018		
45770	29851162	Lee K., Hwang O.J., Reiter R.J., Back K.	Flavonoids inhibit both rice and sheep serotonin N-acetyltransferases and reduce melatonin levels in plants.	J. Pineal Res.	65(3)	e12512	2018		
45771	29951845	Das A., Christ B., H?rtensteiner S.	Characterization of the pheophorbide a oxygenase/phyllobilin pathway of chlorophyll breakdown in grasses.	Planta	248(4)	875-892	2018		
45772	29892032	Huang G., Liang W., Sturrock C.J., Pandey B.K., Giri J., Mairhofer S., Wang D., Muller L., Tan H., York L.M., Yang J., Song Y., Kim Y.J., Qiao Y., Xu J., Kepinski S., Bennett M.J., Zhang D.	Rice actin binding protein RMD controls crown root angle in response to external phosphate.	Nat Commun	9(1)	2346	2018		
45773	29856935	Choi J., Summers W., Paszkowski U.	Mechanisms Underlying Establishment of Arbuscular Mycorrhizal Symbioses.	Annu Rev Phytopathol	56	135-160	2018		
45774	29742810	Latimer S., Li Y., Nguyen T.T.H., Soubeyrand E., Fatihi A., Elowsky C.G., Block A., Pichersky E., Basset G.J.	Metabolic reconstructions identify plant 3-methylglutaconyl-CoA hydratase that is crucial for branched-chain amino acid catabolism in mitochondria.	Plant J.	95(2)	358-370	2018		
45775	29903992	Gianinetti A., Finocchiaro F., Maisenti F., Kouongni Satsap D., Morcia C., Ghizzoni R., Terzi V.	The Caryopsis of Red-Grained Rice Has Enhanced Resistance to Fungal Attack.	J Fungi (Basel)	4(2)		2018		
45776	29954122	Kim I., Lee S.C., Kim E.H., Song K., Yang T.J., Kim H.U.	Genome-Wide Identification and Expression Analyses of the Fibrillin Family Genes Suggest Their Involvement in Photoprotection in Cucumber.	Plants (Basel)	7(3)		2018		
45777	29775492	Xu R., Yu H., Wang J., Duan P., Zhang B., Li J., Li Y., Xu J., Lyu J., Li N., Chai T., Li Y.	A mitogen-activated protein kinase phosphatase influences grain size and weight in rice.	Plant J.	95(6)	937-946	2018	SMG1,MAPK6,GSN1	OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1
45778	29949846	Praveen A., Gupta M.	Nitric oxide confronts arsenic stimulated oxidative stress and root architecture through distinct gene expression of auxin transporters, nutrient related genes and modulates biochemical responses in Oryza sativa L.	Environ. Pollut.	240	950-962	2018		
45779	29879910	Chen J.Y., Zhang H.W., Zhang H.L., Ying J.Z., Ma L.Y., Zhuang J.Y.	Natural variation at qHd1 affects heading date acceleration at high temperatures with pleiotropism for yield traits in rice.	BMC Plant Biol.	18(1)	112	2018		
45780	29915310	Dar M.H., Zaidi N.W., Waza S.A., Verulkar S.B., Ahmed T., Singh P.K., Roy S.K.B., Chaudhary B., Yadav R., Islam M.M., Iftekharuddaula K.M., Roy J.K., Kathiresan R.M., Singh B.N., Singh U.S., Ismail A.M.	No yield penalty under favorable conditions paving the way for successful adoption of flood tolerant rice.	Sci Rep	8(1)	9245	2018		
45781	29856872	Mogga M., Sibiya J., Shimelis H., Lamo J., Yao N.	Diversity analysis and genome-wide association studies of grain shape and eating quality traits in rice (Oryza sativa L.) using DArT markers.	PLoS ONE	13(6)	e0198012	2018		
45782	29926537	Mao L.J., Chen J.J., Xia C.Y., Feng X.X., Kong D.D., Qi Z.Y., Liu F., Chen D., Lin F.C., Zhang C.L.	Identification and characterization of new Muscodor endophytes from gramineous plants in Xishuangbanna, China.	Microbiologyopen		e00666	2018		
45783	29891831	Qin R., Zeng D., Yang C., Akhter D., Alamin M., Jin X., Shi C.	<i>LTBSG1</i>, a New Allele of <i>BRD2</i>, Regulates Panicle and Grain Development in Rice by Brassinosteroid Biosynthetic Pathway.	Genes (Basel)	9(6)		2018	EP3,CPD1,BRD2,G1L5,GW2,FZP,BLE2,D61,MADS47,GS5,SMG1,D11,LAX2,RLCK173,BU1,BRD1,_,DEP1,GW8,DLT,D2,_,TGW6	EP3/LP, LP, OsFbox076, OsFbox76, Os_F0106, OsEP3,OsCPD1, CYP90A3, CYP90A3/OsCPD1,brd2, OsBRD2, Dim/dwf1, Dim, dwf1, OsDWF1, DWF1, LTBSG1, OsLTBSG1,OsG1L5, TAW1, OsTAW1,OsGW2,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,OsBLE2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsMADS47, OsMDP1, MDP, MDP1,OsSCP26, SCP26, OsGS5,OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsLAX2, Gnp4/LAX2, Gnp4,OsRLCK173, OsBSK3, BSK3,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,SPL16, OsSPL16, SLP1, qGW8,dlt, OsGRAS32, OsDLT, OsDLT1, DTL1, OsGRAS-32, OsGRAS32, GRAS-32, GRAS32, SMOS2/DLT, SMOS2, OsSMOS2,d2, dwf2, CYP90D2, D2/CYP90D2, OsD2, SMG11, OsSMG11, D2/SMG11 ,OsPPKL1, PPKL1, qGL3, OsPP54, PP54, GL3.1,tgw6, OsSTRL7, STRL7
45784	29738099	Hua Z., Doroodian P., Vu W.	Contrasting duplication patterns reflect functional diversities of Ubiquitin and Ubiquitin-like protein modifiers in plants.	Plant J.	95(2)	296-311	2018		
45785	29959585	Singh M., Kumar M., Albertsen M.C., Young J.K., Cigan A.M.	Concurrent modifications in the three homeologs of MS45 gene with CRISPR-Cas9 lead to rapid generation of male sterile bread wheat (Triticum aestivum L.).	Plant Mol. Biol.	97(4-5)	371-383	2018		
45786	29876974	Xie H., Peng X., Qian M., Cai Y., Ding X., Chen Q., Cai Q., Zhu Y., Yan L., Cai Y.	The chimeric mitochondrial gene orf182 causes non-pollen-type abortion in Dongxiang cytoplasmic male-sterile rice.	Plant J.			2018	ORF182	orf182
45787	29946330	Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.	Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.	Front Plant Sci	9	782	2018	_,RLIN1,YGL98,_,RPOA,_,PIL13,_,_,YL1,NDHB,PSBA,NDHD,YGL1,YGL18 ,_,SE5,_,YGL10,PSAA,_,ZL16 ,RPOC2,RPOB,SE13,_,_,_,PIL11,LM3,HAD2 ,PIL15,RPOC1,RBCL	OsChlH, ChlH, CHLH, OsCHLH,CPO, CPOX, LLM1, HEMF,OsChlD, ChlD, CHLD, OsCHLD, Ygl7, YGL3,OsPorA, PORA, OsPORA,rope, rpoalpha, Rpoalpha, rope, RpoA ,OsRcaII, rca, RCAII, rcaII, OsRcaI, RCAI, ME137, OsRCA1, RCA,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,ALAD, HEMB,MTC, YGL8, OsCRD1, CRD1, CRD, YL-1, PNZIP,ndhB, NDH2, NADH2,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,ndhD, NdhD, NDH4, NADH4,OsYGL1, CHLG, Ygl1, CS, OsCHLG,ChlM, CHLM, MgMT,OsFLU1, FLU1,Se5, OsHO1, OsHO-1, OsHY1, HO-1, HO1, OsSE5, YGL2, YGL2/HO1,GUN4, OsGUN4,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,PsaA, psaA, PsAA1,HEME,OsHAD1, HAD1 ,rpoC2, RPO beta", RPObeta",rpoB, RpoB, Rpobeta,Se13, OsHY2, OsGUN3, GUN3, PS13,atpB, AtpB, atpcf1, ATPbeta,GSA, GSAT, HEML,PBD, PBGD, HEMC,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,UroD, URO-D,OsHAD2,OsPIL15, OsbHLH105, PIF3, OsPIF3,rpoC1, RPO beta', RPObeta',rbcL, rbcA, OsrbcL
45788	29958473	Choi B.S., Kim Y.J., Markkandan K., Koo Y.J., Song J.T., Seo H.S.	GW2 Functions as an E3 Ubiquitin ligase for Rice Expansin-Like 1.	Int J Mol Sci	19(7)		2018		
45789	30042882	Reiter M.E., Elliott N.K., Jongsomjit D., Golet G.H., Reynolds M.D.	Impact of extreme drought and incentive programs on flooded agriculture and wetlands in California's Central Valley.	PeerJ	6	e5147	2018		
45790	29566243	Yu C., Chen Y., Cao Y., Chen H., Wang J., Bi Y.M., Tian F., Yang F., Rothstein S.J., Zhou X., He C.	Overexpression of miR169o, an Overlapping MicroRNA in Response to Both Nitrogen Limitation and Bacterial Infection, Promotes Nitrogen Use Efficiency and Susceptibility to Bacterial Blight in Rice.	Plant Cell Physiol.	59(6)	1234-1247	2018		
45791	29915249	Muthuramalingam P., Krishnan S.R., Pandian S., Mareeswaran N., Aruni W., Pandian S.K., Ramesh M.	Global analysis of threonine metabolism genes unravel key players in rice to improve the abiotic stress tolerance.	Sci Rep	8(1)	9270	2018		
45792	29890017	Takeda Y., Tobimatsu Y., Karlen S.D., Koshiba T., Suzuki S., Yamamura M., Murakami S., Mukai M., Hattori T., Osakabe K., Ralph J., Sakamoto M., Umezawa T.	Downregulation of p-COUMAROYL ester 3-hydroxylase in rice leads to altered cell wall structures and improves biomass saccharification.	Plant J.			2018		
45793	30172307	Patel J.K., Madaan S., Archana G.	Antibiotic producing endophytic Streptomyces spp. colonize above-ground plant parts and promote shoot growth in multiple healthy and pathogen-challenged cereal crops.	Microbiol. Res.	215	36-45	2018		
45794	29990741	Xie L., Hao P., Cheng Y., Ahmed I.M., Cao F.	Effect of combined application of lead, cadmium, chromium and copper on grain, leaf and stem heavy metal contents at different growth stages in rice.	Ecotoxicol. Environ. Saf.	162	71-76	2018		
45795	29902676	Badmi R., Sheikh A.H., Bhagat P.K., Verma D., Noryang S., Sinha A.K.	Possible role of plant MAP kinases in the biogenesis and transcription regulation of rice microRNA pathway factors.	Plant Physiol. Biochem.	129	238-243	2018		
45796	30033022	Xiang X., Tao H., Jiang S., Zhang L.H., Cui Z.N.	Synthesis and bioactivity of thiazolidin-2-cyanamide derivatives against type III secretion system of Xanthomonas oryzae on rice.	Pestic Biochem Physiol	149	89-97	2018		
45797	29949665	Qin J., Zhou X., Sun L., Wang K., Yang F., Liao H., Rong W., Yin J., Chen H., Chen X., Zhang J.	The Xanthomonas effector XopK harbours E3 ubiquitin-ligase activity that is required for virulence.	New Phytol.	220(1)	219-231	2018		
45798	29873883	Zhao J., Yuan S., Zhou M., Yuan N., Li Z., Hu Q., Bethea F.G., Liu H., Li S., Luo H.	Transgenic creeping bentgrass overexpressing Osa-miR393a exhibits altered plant development and improved multiple stress tolerance.	Plant Biotechnol. J.			2018		
45799	29498045	Kurokawa Y., Nagai K., Huan P.D., Shimazaki K., Qu H., Mori Y., Toda Y., Kuroha T., Hayashi N., Aiga S., Itoh J.I., Yoshimura A., Sasaki-Sekimoto Y., Ohta H., Shimojima M., Malik A.I., Pedersen O., Colmer T.D., Ashikari M.	Rice leaf hydrophobicity and gas films are conferred by a wax synthesis gene (LGF1) and contribute to flood tolerance.	New Phytol.	218(4)	1558-1569	2018	DRP7	drp7, OsHSD1, LGF1, HSD1
45800	29856853	Han Y., Wu C., Yang L., Zhang D., Xiao Y.	Resistance to Nilaparvata lugens in rice lines introgressed with the resistance genes Bph14 and Bph15 and related resistance types.	PLoS ONE	13(6)	e0198630	2018		
45801	30008605	Thanoi S., Roboon J., Nudmamud-Thanoi S.	Recovery effect of pre-germinated brown rice on the changes of sperm quality, testicular structure and androgen receptor expression in a rat model of drug addiction.	Int J Med Sci	15(9)	921-928	2018		
45802	29546444	Wang S., Ma B., Gao Q., Jiang G., Zhou L., Tu B., Qin P., Tan X., Liu P., Kang Y., Wang Y., Chen W., Liang C., Li S.	Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes.	Theor. Appl. Genet.	131(6)	1391-1403	2018		
45803	29933132	Gupta S.D., Agarwal A., Pradhan S.	Phytostimulatory effect of silver nanoparticles (AgNPs) on rice seedling growth: An insight from antioxidative enzyme activities and gene expression patterns.	Ecotoxicol. Environ. Saf.	161	624-633	2018		
45804	30080612	Chen G., Zhang Y., Ruan B., Guo L., Zeng D., Gao Z., Zhu L., Hu J., Ren D., Yu L., Xu G., Qian Q.	OsHAK1 controls the vegetative growth and panicle fertility of rice by its effect on potassium-mediated sugar metabolism.	Plant Sci.	274	261-270	2018		
45805	30100801	Li J., Zhou J., Xu P., Deng X., Deng W., He M., Yang Y., Zhang Y., Tao D.	Neutral alleles at hybrid sterility loci of <i>Oryza glaberrima</i> from AA genome relatives in Genus <i>Oryza</i>.	Breed. Sci.	68(3)	343-351	2018		
45806	29942292	Lasudee K., Tokuyama S., Lumyong S., Pathom-Aree W.	Actinobacteria Associated With Arbuscular Mycorrhizal <i>Funneliformis mosseae</i> Spores, Taxonomic Characterization and Their Beneficial Traits to Plants: Evidence Obtained From Mung Bean (<i>Vigna radiata</i>) and Thai Jasmine Rice (<i>Oryza sativa</i>).	Front Microbiol	9	1247	2018		
45807	29912641	Kim Y.O., Kang H.	Comparative expression analysis of genes encoding metallothioneins in response to heavy metals and abiotic stresses in rice (Oryza sativa) and Arabidopsis thaliana.	Biosci. Biotechnol. Biochem.	82(9)	1656-1665	2018		
45808	29957570	Yugandhar P., Sun Y., Liu L., Negi M., Nallamothu V., Sun S., Neelamraju S., Rai V., Jain A.	Characterization of the loss-of-function mutant NH101 for yield under phosphate deficiency from EMS-induced mutants of rice variety Nagina22.	Plant Physiol. Biochem.	130	1-13	2018		
45809	30100797	Fukuda A., Kondo K., Ikka T., Takai T., Tanabata T., Yamamoto T.	A novel QTL associated with rice canopy temperature difference affects stomatal conductance and leaf photosynthesis.	Breed. Sci.	68(3)	305-315	2018		
45810	29928286	Li H., Ji G., Wang Y., Qian Q., Xu J., Sodmergen, Liu G., Zhao X., Chen M., Zhai W., Li D., Zhu L.	WHITE PANICLE3, a Novel Nucleus-Encoded Mitochondrial Protein, Is Essential for Proper Development and Maintenance of Chloroplasts and Mitochondria in Rice.	Front Plant Sci	9	762	2018	CAB1R,WP3,AOX1A,CYTC1-1,_,RBCL	cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,,Ao1-1, AOX1a, OsAOX1a, AOX 1a,CytC1-1,RbcS3, OsRBCS3, OsRbcS3, rbcS ,rbcL, rbcA, OsrbcL
45811	29891814	Shi Y., Huang W., Ye H., Ruan C., Xing N., Geng Y., Dong Y., Peng D.	Partial Least Square Discriminant Analysis Based on Normalized Two-Stage Vegetation Indices for Mapping Damage from Rice Diseases Using PlanetScope Datasets.	Sensors (Basel)	18(6)		2018		
45812	30007723	Ye J., Liu C., Luo S., Hu X., McClements D.J.	Modification of the digestibility of extruded rice starch by enzyme treatment (beta-amylolysis): An in vitro study.	Food Res. Int.	111	590-596	2018		
45813	29876699	Buti M., Pasquariello M., Ronga D., Milc J.A., Pecchioni N., Ho V.T., Pucciariello C., Perata P., Francia E.	Transcriptome profiling of short-term response to chilling stress in tolerant and sensitive Oryza sativa ssp. Japonica seedlings.	Funct. Integr. Genomics			2018		
45814	29922319	Bernaola L., Cosme M., Schneider R.W., Stout M.	Belowground Inoculation With Arbuscular Mycorrhizal Fungi Increases Local and Systemic Susceptibility of Rice Plants to Different Pest Organisms.	Front Plant Sci	9	747	2018		
45815	29864538	Sudan S.K., Kumar N., Kaur I., Sahni G.	Production, purification and characterization of raw starch hydrolyzing thermostable acidic alpha-amylase from hot springs, India.	Int. J. Biol. Macromol.	117	831-839	2018		
45816	29899498	Li P., Liu H., Li F., Liao X., Ali S., Hou M.	A virus plays a role in partially suppressing plant defenses induced by the viruliferous vectors.	Sci Rep	8(1)	9027	2018		
45817	29872176	Lv S., Wu W., Wang M., Meyer R.S., Ndjiondjop M.N., Tan L., Zhou H., Zhang J., Fu Y., Cai H., Sun C., Wing R.A., Zhu Z.	Genetic control of seed shattering during African rice domestication.	Nat Plants	4(6)	331-337	2018		
45818	29960182	Chowrasia S., Panda A.K., Rawal H.C., Kaur H., Mondal T.K.	Identification of jumonjiC domain containing gene family among the Oryza species and their expression analysis in FL478, a salt tolerant rice genotype.	Plant Physiol. Biochem.	130	43-53	2018		
45819	30008701	Li P., Ye S., Liu H., Pan A., Ming F., Tang X.	Cultivation of Drought-Tolerant and Insect-Resistant Rice Affects Soil Bacterial, but Not Fungal, Abundances and Community Structures.	Front Microbiol	9	1390	2018		
45820	29943213	Thapa S., Prasanna R., Ramakrishnan B., Sheoran N., Kumar A., Velmourougane K., Kumar A.	Interactive effects of Magnaporthe inoculation and nitrogen doses on the plant enzyme machinery and phyllosphere microbiome of resistant and susceptible rice cultivars.	Arch. Microbiol.	200(9)	1287-1305	2018		
45821	29869742	Gao Y., Wu M., Zhang M., Jiang W., Liang E., Zhang D., Zhang C., Xiao N., Chen J.	Roles of a maize Phytochrome-interacting factors protein ZmPIF3 in regulation of drought stress responses by controlling stomatal closure in transgenic rice without yield penalty.	Plant Mol. Biol.	97(4-5)	311-323	2018		
45822	29761864	Peng C., Wang H., Xu X., Wang X., Chen X., Wei W., Lai Y., Liu G., Godwin I.D., Li J., Zhang L., Xu J.	High-throughput detection and screening of plants modified by gene editing using quantitative real-time polymerase chain reaction.	Plant J.	95(3)	557-567	2018		
45823	29881659	Rahalkar M.C., Patil S., Dhakephalkar P.K., Bahulikar R.A.	Cultivated methanotrophs associated with rhizospheres of traditional rice landraces from Western India belong to <i>Methylocaldum</i> and <i>Methylocysti</i>s.	3 Biotech	8(6)	281	2018		
45824	29908738	Wu Z., Feng X., Li P., Lin C.J., Qiu G., Wang X., Zhao H., Dong H.	Comparison of in vitro digestion methods for determining bioaccessibility of Hg in rice of China.	J Environ Sci (China)	68	185-193	2018		
45825	29973950	Vijayan J., Devanna B.N., Singh N.K., Sharma T.R.	Corrigendum: Cloning and functional validation of early inducible <i>Magnaporthe oryzae</i> responsive <i>CYP76M7</i> promoter from rice.	Front Plant Sci	9	939	2018		
45826	30080633	Filichkin S.A., Ansariola M., Fraser V.N., Megraw M.	Identification of transcription factors from NF-Y, NAC, and SPL families responding to osmotic stress in multiple tomato varieties.	Plant Sci.	274	441-450	2018		
45827	29886196	Huang R., Li Y., Tang G., Hui S., Yang Z., Zhao J., Liu H., Cao J., Yuan M.	Dynamic phytohormone profiling of rice upon rice black-streaked dwarf virus invasion.	J. Plant Physiol.	228	92-100	2018		
45828	29907833	Rao I.S., Neeraja C.N., Srikanth B., Subrahmanyam D., Swamy K.N., Rajesh K., Vijayalakshmi P., Kiran T.V., Sailaja N., Revathi P., Rao P.R., Rao L.V.S., Surekha K., Babu V.R., Voleti S.R.	Identification of rice landraces with promising yield and the associated genomic regions under low nitrogen.	Sci Rep	8(1)	9200	2018		
45829	30271965	Wu Z., Fang D., Yang R., Gao F., An X., Zhuo X., Li Y., Yi C., Zhang T., Liang C., Cui P., Cheng Z., Luo Q.	De novo genome assembly of <i>Oryza granulata</i> reveals rapid genome expansion and adaptive evolution.	Commun Biol	1	84	2018		
45830	29908279	Song N., Xu Z., Wang J., Qin Q., Jiang H., Si W., Li X.	Genome-wide analysis of maize CONSTANS-LIKE gene family and expression profiling under light/dark and abscisic acid treatment.	Gene	673	1-11	2018		
45831	29934776	Ge Y., Han J., Zhou G., Xu Y., Ding Y., Shi M., Guo C., Wu G.	Silencing of miR156 confers enhanced resistance to brown planthopper in rice.	Planta			2018		
45832	29879216	Wang J., Wang J., Wang X., Li R., Chen B.	Proteomic response of hybrid wild rice to cold stress at the seedling stage.	PLoS ONE	13(6)	e0198675	2018		
45833	29616057	Salvador-Guirao R., Hsing Y.I., San Segundo B.	The Polycistronic miR166k-166h Positively Regulates Rice Immunity via Post-transcriptional Control of <i>EIN2</i>.	Front Plant Sci	9	337	2018		
45834	29643863	Liao Y., Bai Q., Xu P., Wu T., Guo D., Peng Y., Zhang H., Deng X., Chen X., Luo M., Ali A., Wang W., Wu X.	Mutation in Rice <i>Abscisic Acid2</i> Results in Cell Death, Enhanced Disease-Resistance, Altered Seed Dormancy and Development.	Front Plant Sci	9	405	2018		
45835	29106443	Tang W., Huang L., Bu S., Zhang X., Wu W.	Estimation of QTL heritability based on pooled sequencing data.	Bioinformatics	34(6)	978-984	2018		
45836	29361035	Cheng S., Tan F., Lu Y., Liu X., Li T., Yuan W., Zhao Y., Zhou D.X.	WOX11 recruits a histone H3K27me3 demethylase to promote gene expression during shoot development in rice.	Nucleic Acids Res.	46(5)	2356-2369	2018		
45837	29870880	Yun H., Lim S., Kim Y.X., Lee Y., Lee S., Lee D., Park K., Sung J.	Diurnal changes in CN metabolism and response of rice seedlings to UV-B radiation.	J. Plant Physiol.	228	66-74	2018		
45838	29365184	Zhao D., Hamilton J.P., Vaillancourt B., Zhang W., Eizenga G.C., Cui Y., Jiang J., Buell C.R., Jiang N.	The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum.	Nucleic Acids Res.	46(5)	2380-2397	2018		
45839	29580214	Zhan L.P., Peng D.L., Wang X.L., Kong L.A., Peng H., Liu S.M., Liu Y., Huang W.K.	Priming effect of root-applied silicon on the enhancement of induced resistance to the root-knot nematode Meloidogyne graminicola in rice.	BMC Plant Biol.	18(1)	50	2018		
45840	29373714	Wang Y., Cao L., Zhang Y., Cao C., Liu F., Huang F., Qiu Y., Li R., Luo X.	Corrigendum: Map-based cloning and characterization of BPH29, a B3 domain-containing recessive gene conferring brown planthopper resistance in rice.	J. Exp. Bot.	69(7)	1815	2018		
45841	30271909	Hubbart S., Smillie I.R.A., Heatley M., Swarup R., Foo C.C., Zhao L., Murchie E.H.	Enhanced thylakoid photoprotection can increase yield and canopy radiation use efficiency in rice.	Commun Biol	1	22	2018		
45842	29558397	Wanniarachchi V.R., Dametto L., Sweetman C., Shavrukov Y., Day D.A., Jenkins C.L.D., Soole K.L.	Alternative Respiratory Pathway Component Genes (AOX and ND) in Rice and Barley and Their Response to Stress.	Int J Mol Sci	19(3)		2018		
45843	29361187	Sun X., Zhang Z., Chen C., Wu W., Ren N., Jiang C., Yu J., Zhao Y., Zheng X., Yang Q., Zhang H., Li J., Li Z.	The C-S-A gene system regulates hull pigmentation and reveals evolution of anthocyanin biosynthesis pathway in rice.	J. Exp. Bot.	69(7)	1485-1498	2018		
45844	29575814	Nakaew N., Sungthong R.	Seed phytochemicals shape the community structures of cultivable actinobacteria-inhabiting plant interiors of Thai pigmented rice.	Microbiologyopen	7(4)	e00591	2018		
45845	29532187	Zhang C., Li G., Chen T., Feng B., Fu W., Yan J., Islam M.R., Jin Q., Tao L., Fu G.	Heat stress induces spikelet sterility in rice at anthesis through inhibition of pollen tube elongation interfering with auxin homeostasis in pollinated pistils.	Rice (N Y)	11(1)	14	2018		
45846	29602104	Chen H., Tang Z., Wang P., Zhao F.J.	Geographical variations of cadmium and arsenic concentrations and arsenic speciation in Chinese rice.	Environ. Pollut.	238	482-490	2018		
45847	29546482	Kurt F., Filiz E.	Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.	Biometals	31(4)	489-504	2018	_	OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56
45848	29875603	Mizuno Y., Yamanouchi U., Hoshino T., Nonoue Y., Nagata K., Fukuoka S., Ando T., Yano M., Sugimoto K.	Genetic dissection of pre-harvest sprouting resistance in an upland rice cultivar.	Breed. Sci.	68(2)	200-209	2018		
45849	29327440	Gao Y., Wu M., Zhang M., Jiang W., Ren X., Liang E., Zhang D., Zhang C., Xiao N., Li Y., Dai Y., Chen J.	A maize Phytochrome-interacting factors protein ZmPIF1 enhances drought tolerance by inducing stomatal closure and improves grain yield in Oryza sativa.	Plant Biotechnol. J.	16(7)	1375-1387	2018		
45850	29785071	Mishra P., Singh N., Jain A., Jain N., Mishra V., G P., Sandhya K.P., Singh N.K., Rai V.	Identification of cis-regulatory elements associated with salinity and drought stress tolerance in rice from co-expressed gene interaction networks.	Bioinformation	14(3)	123-131	2018		
45851	29785067	Kaur G., Pati P.K.	<i>In silico</i> physicochemical characterization and topology analysis of Respiratory burst oxidase homolog (Rboh) proteins from Arabidopsis and rice.	Bioinformation	14(3)	93-100	2018		
45852	29567453	Li S., Zhang X., Wang W., Guo X., Wu Z., Du W., Zhao Y., Xia L.	Expanding the Scope of CRISPR/Cpf1-Mediated Genome Editing in Rice.	Mol Plant	11(7)	995-998	2018		
45853	29603592	Wang J., Zeng X., Tian D., Yang X., Wang L., Yin Z.	The pepper Bs4C proteins are localized to the endoplasmic reticulum (ER) membrane and confer disease resistance to bacterial blight in transgenic rice.	Mol. Plant Pathol.			2018		
45854	29594496	Zhang S., Chang M., Zhou Z., Dai X., Xu Z.	pDHS-ELM: computational predictor for plant DNase I hypersensitive sites based on extreme learning machines.	Mol. Genet. Genomics	293(4)	1035-1049	2018		
45855	29616070	Cho S.H., Lee C.H., Gi E., Yim Y., Koh H.J., Kang K., Paek N.C.	The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.	Front Plant Sci	9	364	2018	RFS,FSD1.1 ,PRXIIE2,SOD2,CATC,APX8	rfs, cul7, OsRFS,OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1,Pre IIE2, OsPrxII E2, PrxII E2, OsPrxIIE2, PrxIIE2,OsSOD2, OsSOD2-Cu/Zn, SOD2-Cu/Zn,OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8
45856	29564499	Lee G., Lee K.I., Lee Y., Kim B., Lee D., Seo J., Jang S., Chin J.H., Koh H.J.	Identification of a novel SPLIT-HULL (SPH) gene associated with hull splitting in rice (Oryza sativa L.).	Theor. Appl. Genet.	131(7)	1469-1480	2018	SPH	OsLOX6, LOX6
45857	29550436	Mitra S., Pramanik K., Sarkar A., Ghosh P.K., Soren T., Maiti T.K.	Bioaccumulation of cadmium by Enterobacter sp. and enhancement of rice seedling growth under cadmium stress.	Ecotoxicol. Environ. Saf.	156	183-196	2018		
45858	29736396	Jasim Aljumaili S., Rafii M.Y., Latif M.A., Sakimin S.Z., Arolu I.W., Miah G.	Genetic Diversity of Aromatic Rice Germplasm Revealed By SSR Markers.	Biomed Res Int	2018	7658032	2018		
45859	29596474	Ling L., Jiang Y., Meng J.J., Cai L.M., Cao G.C.	Phloem transport capacity of transgenic rice T1c-19 (Cry1C*) under several potassium fertilizer levels.	PLoS ONE	13(3)	e0195058	2018		
45860	29503500	Horgan F.G., Pe?alver Cruz A., Bernal C.C., Ramal A.F., Almazan M.L.P., Wilby A.	Resistance and tolerance to the brown planthopper, <i>Nilaparvata lugens</i> (St?l), in rice infested at different growth stages across a gradient of nitrogen applications.	Field Crops Res.	217	53-65	2018		
45861	29506473	Chai G., Li C., Xu F., Li Y., Shi X., Wang Y., Wang Z.	Three endoplasmic reticulum-associated fatty acyl-coenzyme a reductases were involved in the production of primary alcohols in hexaploid wheat (Triticum aestivum L.).	BMC Plant Biol.	18(1)	41	2018		
45862	29498672	Tariq R., Wang C., Qin T., Xu F., Tang Y., Gao Y., Ji Z., Zhao K.	Comparative Transcriptome Profiling of Rice Near-Isogenic Line Carrying Xa23 under Infection of Xanthomonas oryzae pv. oryzae.	Int J Mol Sci	19(3)		2018		
45863	29330915	Li Z., Wan G., Wang L., Parajulee M.N., Zhao Z., Chen F.	Effects of seed mixture sowing with resistant and susceptible rice on population dynamics of target planthoppers and non-target stemborers and leaffolders.	Pest Manag. Sci.	74(7)	1664-1676	2018		
45864	29505628	Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.	Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.	Plant Genome	11(1)		2018	PSBA,ST1,YGL10,_,RBCL,CAB1R,FGL,_,TCM1,V2,YGL1,RBCS,_,V3,PSAA,RPOTP,RPOB	PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,st1(ws1), ws1, st1, RNRS1, rnrs1, RNRS, SDL/RNRS1, SDL,CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,rbcL, rbcA, OsrbcL,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,PolI-like, OsPoLP1, PoLP1, OsRpoLp, RpoLp,OsTCM1,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,OsYGL1, CHLG, Ygl1, CS, OsCHLG,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,HEMA1, HEMA, OsHEMA, GluTR, OsHEMA1,v3, RNRL1, rnrl1, RNR1, RNRL,PsaA, psaA, PsAA1,OsRpo Tp, OsRpoTp, NEP, RpoTp,rpoB, RpoB, Rpobeta
45865	29325120	Kobae Y., Kameoka H., Sugimura Y., Saito K., Ohtomo R., Fujiwara T., Kyozuka J.	Strigolactone Biosynthesis Genes of Rice are Required for the Punctual Entry of Arbuscular Mycorrhizal Fungi into the Roots.	Plant Cell Physiol.	59(3)	544-553	2018		
45866	29556245	Liu L., Xia W., Li H., Zeng H., Wei B., Han S., Yin C.	Salinity Inhibits Rice Seed Germination by Reducing alpha-amylase Activity via Decreased Bioactive Gibberellin Content.	Front Plant Sci	9	275	2018		
45867	29875604	Okada S., Onogi A., Iijima K., Hori K., Iwata H., Yokoyama W., Suehiro M., Yamasaki M.	Identification of QTLs for rice grain size using a novel set of chromosomal segment substitution lines derived from Yamadanishiki in the genetic background of Koshihikari.	Breed. Sci.	68(2)	210-218	2018		
45868	29325159	Zhong R., Cui D., Phillips D.R., Ye Z.H.	A Novel Rice Xylosyltransferase Catalyzes the Addition of 2-O-Xylosyl Side Chains onto the Xylan Backbone.	Plant Cell Physiol.	59(3)	554-565	2018	XAT2,XAT3,XYXT1	OsXAT2,OsXAT3,OsXYXT1
45869	29593764	Feng B., Chen K., Cui Y., Wu Z., Zheng T., Zhu Y., Ali J., Wang B., Xu J., Zhang W., Li Z.	Genetic Dissection and Simultaneous Improvement of Drought and Low Nitrogen Tolerances by Designed QTL Pyramiding in Rice.	Front Plant Sci	9	306	2018		
45870	29523952	Li N., Xu R., Duan P., Li Y.	Control of grain size.in rice.	Plant Reproduction	31(3)	237-251	2018		
45871	29559982	Huang Y., Guo Y., Liu Y., Zhang F., Wang Z., Wang H., Wang F., Li D., Mao D., Luan S., Liang M., Chen L.	9-<i>cis</i>-Epoxycarotenoid Dioxygenase 3 Regulates Plant Growth and Enhances Multi-Abiotic Stress Tolerance in Rice.	Front Plant Sci	9	162	2018		
45872	29511908	Zhai L., Zheng T., Wang X., Wang Y., Chen K., Wang S., Wang Y., Xu J., Li Z.	QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study.	Rice (N Y)	11(1)	13	2018		
45873	29780215	Tian B., Talukder S.K., Fu J., Fritz A.K., Trick H.N.	Expression of a rice soluble starch synthase gene in transgenic wheat improves the grain yield under heat stress conditions.	In Vitro Cell. Dev. Biol., Plant	54(3)	216-227	2018		
45874	29511225	Khan G.H., Shikari A.B., Vaishnavi R., Najeeb S., Padder B.A., Bhat Z.A., Parray G.A., Bhat M.A., Kumar R., Singh N.K.	Marker-assisted introgression of three dominant blast resistance genes into an aromatic rice cultivar Mushk Budji.	Sci Rep	8(1)	4091	2018		
45875	29518024	Verma S.K., Kingsley K.L., Bergen M.S., Kowalski K.P., White J.F.	Fungal Disease Prevention in Seedlings of Rice (Oryza sativa) and Other Grasses by Growth-Promoting Seed-Associated Endophytic Bacteria from Invasive Phragmites australis.	Microorganisms	6(1)		2018		
45876	29531273	Suralta R.R., Niones J.M., Kano-Nakata M., Thi Tran T., Mitsuya S., Yamauchi A.	Plasticity in nodal root elongation through the hardpan triggered by rewatering during soil moisture fluctuation stress in rice.	Sci Rep	8(1)	4341	2018		
45877	29587643	Walitang D.I., Kim C.G., Kim K., Kang Y., Kim Y.K., Sa T.	The influence of host genotype and salt stress on the seed endophytic community of salt-sensitive and salt-tolerant rice cultivars.	BMC Plant Biol.	18(1)	51	2018		
45878	29576541	Liu C.T., Wang W., Mao B.G., Chu C.C.	Cold stress tolerance in rice: physiological changes, molecular mechanism, and future prospects.	Yi Chuan	40(3)	171-185	2018		
45879	29579100	Ram?rez-Olvera SM., Trejo-T?llez LI., Garc?a-Morales S., P?rez-Sato JA., G?mez-Merino FC.	Cerium enhances germination and shoot growth, and alters mineral nutrient concentration in rice.	PLoS ONE	13(3)	e0194691	2018		
45880	29531264	Ogawa D., Yamamoto E., Ohtani T., Kanno N., Tsunematsu H., Nonoue Y., Yano M., Yamamoto T., Yonemaru J.I.	Haplotype-based allele mining in the Japan-MAGIC rice population.	Sci Rep	8(1)	4379	2018		
45881	29875609	Abe K., Oshima M., Akasaka M., Konagaya K.I., Nanasato Y., Okuzaki A., Taniguchi Y., Tanaka J., Tabei Y.	Development and characterization of transgenic dominant male sterile rice toward an outcross-based breeding system.	Breed. Sci.	68(2)	248-257	2018		
45882	29505639	Rosas J.E., Mart?nez S., Blanco P., P?rez de Vida F., Bonnecarr?re V., Mosquera G., Cruz M., Garaycochea S., Monteverde E., McCouch S., Germ?n S., Jannink J.L., Guti?rrez L.	Resistance to Multiple Temperate and Tropical Stem and Sheath Diseases of Rice.	Plant Genome	11(1)		2018		
45883	29552021	Rho H., Van Epps V., Wegley N., Doty S.L., Kim S.H.	Salicaceae Endophytes Modulate Stomatal Behavior and Increase Water Use Efficiency in Rice.	Front Plant Sci	9	188	2018		
45884	29318739	Liang Y., Liu F., Li J., Cheng Z., Chen H., Wang X., Xiao N., Liu Y.	Coexistence of Bacillus thuringiensis (Bt)-transgenic and conventional rice affects insect abundance and plant fitness in fields.	Pest Manag. Sci.	74(7)	1646-1653	2018		
45885	29556243	Formentin E., Sudiro C., Perin G., Riccadonna S., Barizza E., Baldoni E., Lavezzo E., Stevanato P., Sacchi G.A., Fontana P., Toppo S., Morosinotto T., Zottini M., Lo Schiavo F.	Transcriptome and Cell Physiological Analyses in Different Rice Cultivars Provide New Insights Into Adaptive and Salinity Stress Responses.	Front Plant Sci	9	204	2018		
45886	29522438	Xuan T.D., Khang D.T.	Effects of Exogenous Application of Protocatechuic Acid and Vanillic Acid to Chlorophylls, Phenolics and Antioxidant Enzymes of Rice (Oryza sativa L.) in Submergence.	Molecules	23(3)		2018		
45887	26407527	Wang C., Guo W., Ye S., Wei P., Ow D.W.	Reduction of Cd in Rice through Expression of OXS3-like Gene Fragments.	Mol Plant			2015	OXS3,O3L5,O3L7,O3L1,O3L3,O3L2,SKIN2,O3L4,O3L6,SKIN1	OsOXS3,OsO3L5,OsO3L7,OsO3L1,OsO3L3,OsO3L2,OsSKIN2, OsO3L9, O3L9,OsO3L4,OsO3L6,OsSKIN1, OsO3L8, O3L8
45888	11223257	R Rakwal, G Kumar Agrawal, N S Jwa	Characterization of a rice (Oryza sativa L.) Bowman-Birk proteinase inhibitor: tightly light regulated induction in response to cut, jasmonic acid, ethylene and protein phosphatase 2A inhibitors.	Gene	263(1-2)	189-98	2001	RBBI3-3	RBBI3-3, OsBBPI, BBPI
45889	7742858	Z Y Wang, F Q Zheng, G Z Shen, J P Gao, D P Snustad, M G Li, J L Zhang, M M Hong	The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene.	Plant J.	7(4)	613-22	1995	WX1	wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI, GSS , OsWx
45890	25732590	Yang C., Lu X., Ma B., Chen S.Y., Zhang J.S.	Ethylene Signaling in Rice and Arabidopsis: Conserved and Diverged Aspects.	Mol Plant	8(4)	495-505	2015	_,ERF3,_,ETR4,_,ERF77,_,ERF102,ERS1,EIL3,ERF93,ERS2,_,EIL2,EBP-89,EIL1,EIL4,_,_,_,ETR2,_,_,ERF12,EIN2,EIL5,_,ETR3,EIL6	OsCTR2, CTR2,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsCTR1, CTR1,PK3, OsPK3, OsETR4, OS-ETR4,OsEIN2.3, EIN2.3,OsAP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149,OsEIN2.4, EIN2.4,OsERF#102, OsERF102, AP2/EREBP#123, AP2/EREBP123, OsEATB, EATB,OS-ERS1, OsERS1, OsERS1a, OsERS1b, OSERS,OsEIL3,OsERF1, OsERF#093, OsERF093, OsERF93, AP2/EREBP#168, AP2/EREBP168,OS-ERS2, OsERS2, OsERS2a, OsERS2b, OsERS2c,OsFbox072, OsFbox72, Fbox72, Os_F0508, OsEBF2, EBF2,OsEIL2,OsEBP-89, ebp-89, OsERF#060, OsERF060, OsERF60, ERF60, AP2/EREBP#027, AP2/EREBP27, OsEBP89,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a,OsEIL4,OsRTH2, RTH2,OsCTR3, CTR3,OsRTH1, RTH1,etr2, OsPK1, PK1, ERL1, OsETR2, OsERL1, OS-ETR2, OsERS3,OsFbox316, Fbox316, Os_F0624, OsEBF1, EBF1,OsEIN2.2, EIN2.2,OsERF#012, OsERF012, OsERF12, OsDERF1, DERF1, AP2/EREBP#070, AP2/EREBP70,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsEIL5,OsRTH3, RTH3,OsETR3, OsERS4, OS-ETR3, OsETR3a, OsETR3b, PK2, OsPK2,OsEIL6
45891	16682641	Cornelius S Barry, James J Giovannoni	Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling.	Proc. Natl. Acad. Sci. U.S.A.	103(20)	7923-8	2006	_,_,_	OsRTH2, RTH2,OsRTH3, RTH3,OsRTH1, RTH1
45892	29610335	Wang L., Chen H., Wang C., Hu Z., Yan S.	Negative regulator of E2F transcription factors links cell cycle checkpoint and DNA damage repair.	Proc. Natl. Acad. Sci. U.S.A.	115(16)	E3837-E3845	2018	CDC6,_,SNI1,_	OsCDC6,Orysa;E2F1, OsE2F1, E2F1,OsSNI1,OsPCNA, PCNA
45893	29893948	Liu X., Lan J., Huang Y., Cao P., Zhou C., Ren Y., He N., Liu S., Tian Y., Nguyen T., Jiang L., Wan J.	WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress.	J. Exp. Bot.	69(16)	3949-3961	2018	RPL2,_,WSL5,RPS12	rpl2,OsPorA, PORA, OsPORA,OsWSL5,rps12
45894	30002257	Zhang Y., Chen K., Fang-Jie Zhao, Sun C., Jin C., Shi Y., Sun Y., Li Y., Yang M., Jing X., Luo J., Lian X.	OsATX1 Interacts with Heavy Metal P1B-Type ATPases and Affects Copper Transport and Distribution.	Plant Physiol.	178(1)	329-344	2018	ATX1,HMA6,HMA9,HMA4,HMA5	OsATX1,OsHMA5, osHMA6, HMA5,OsHMA9 ,oshma9-1, oshma9-2, HMA9,OsHMA7, osHMA4, HMA7,OsHMA8, osHMA5, HMA8
45895	30081823	Zeng L., Liu X., Zhou Z., Li D., Zhao X., Zhu L., Luo Y., Hu S.	Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis.	BMC Plant Biol.	18(1)	157	2018	SE1,RFT1,EF1,PHL3,HD3A	Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsPHL3,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
45896	30102358	Zhang T., Feng P., Li Y., Yu P., Yu G., Sang X., Ling Y., Zeng X., Li Y., Huang J., Zhang T., Zhao F., Wang N., Zhang C., Yang Z., Wu R., He G.	VIRESCENT-ALBINO LEAF 1 regulates leaf colour development and cell division in rice.	J. Exp. Bot.	69(20)	4791-4804	2018	VAL1	OsVAL1, PurD, OsPurD
45897	30158538	Wang Y., Luo X., Sun F., Hu J., Zha X., Su W., Yang J.	Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice.	Nat Commun	9(1)	3516	2018	HAM701,_,_,LAIR	OsHAM701, OsMOF, MOF,LRK1, OsLRK1,OsWD40-86, WD40-86, OsWDR5a, WDR5a, OsWDR5, WDR5,
45898	30284062	Yu Z., Dong L., Jiang Z., Yi K., Zhang J., Zhang Z., Zhu Z., Wu Y., Xu M., Ni J.	A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice.	Rice (N Y)	11(1)	54	2018	NRTP1	OsNRTP1
45899	29540705	Kuo-Fu Tseng, Wang P., Yuh-Ru Julie Lee, Bowen J., Allison M Gicking, Guo L., Liu B., Qiu W.	The preprophase band-associated kinesin-14 OsKCH2 is a processive minus-end-directed microtubule motor.	Nat Commun	9(1)	1067	2018	KCH2	OsKCH2
45900	29431741	Ajaya K Biswal, Melani A Atmodjo, Li M., Holly L Baxter, Chang Geun Yoo, Pu Y., Yi-Ching Lee, Mazarei M., Ian M Black, Ji-Yi Zhang, Ramanna H., Adam L Bray, Zachary R King, Peter R LaFayette, Pattathil S., Bryon S Donohoe, Sushree S Mohanty, Ryno D., Yee K., Olivia A Thompson, Rodriguez M., Dumitrache A., Natzke J., Winkeler K., Collins C., Yang X., Tan L., Robert W Sykes, Erica L Gjersing, Ziebell A., Geoffrey B Turner, Stephen R Decker, Michael G Hahn, Brian H Davison, Michael K Udvardi, Jonathan R Mielenz, Mark F Davis, Richard S Nelson, Wayne A Parrott, Arthur J Ragauskas, C Neal Stewart, Mohnen D.	Sugar release and growth of biofuel crops are improved by downregulation of pectin biosynthesis.	Nat. Biotechnol.	36(3)	249-257	2018	GAUT4	OsGAUT4
45901	29944211	Cai Y., Zhang W., Jin J., Yang X., You X., Yan H., Wang L., Chen J., Xu J., Chen W., Chen X., Ma J., Tang X., Kong F., Zhu X., Wang G., Jiang L., Terzaghi W., Wang C., Wan J.	OsPKpalpha1 encodes a plastidic Pyruvate kinase that affects starch biosynthesis in the rice endosperm.	J Integr Plant Biol	60(11)	1097-1118	2018	PKPA1	OsPKpa1
45902	30019754	Xiao H., Zhang Q., Qin X., Xu Y., Ni C., Huang J., Zhu L., Zhong F., Liu W., Yao G., Zhu Y., Hu J.	Rice PPS1 encodes a DYW motif-containing pentatricopeptide repeat protein required for five consecutive RNA-editing sites of nad3 in mitochondria.	New Phytol.	220(3)	878-892	2018	PPS1	OsPPS1
45903	30020522	Yuan X., Huang P., Wang R., Li H., Lv X., Duan M., Tang H., Zhang H., Huang J.	A Zinc Finger Transcriptional Repressor Confers Pleiotropic Effects on Rice Growth and drought tolerance by Down-Regulating Stress-Responsive Genes.	Plant Cell Physiol.	59(10)	2129-2142	2018	DRZ1	OsDRZ1
45904	30071144	Fang J., Yuan S., Li C., Jiang D., Zhao L., Peng L., Zhao J., Zhang W., Li X.	Reduction of ATPase activity in the rice kinesin protein Stemless Dwarf?1 inhibits cell division and organ development.	Plant J.	96(3)	620-634	2018	STD1	OsSTD1
45905	30117035	Li K., Chen Y., Luo Y., Huang F., Zhao C., Cheng F., Xiang X., Pan G.	A 22-bp deletion in OsPLS3 gene encoding a DUF266-containing protein is implicated in rice leaf senescence.	Plant Mol. Biol.	98(1-2)	19-32	2018	PLS3	OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1
45906	30151559	Hu T., Tian Y., Zhu J., Wang Y., Jing R., Lei J., Sun Y., Yu Y., Li J., Chen X., Zhu X., Hao Y., Liu L., Wang Y., Wan J.	OsNDUFA9 encoding a mitochondrial complex I subunit is essential for embryo development and starch synthesis in rice.	Plant Cell Rep.	37(12)	1667-1679	2018	FLO13	OsNDUFA9, NDUFA9 
45907	30295937	Cui X., Wang Y., Wu J., Han X., Gu X., Lu T., Zhang Z.	The RNA editing factor DUA1 is crucial to chloroplast development at low temperature in rice.	New Phytol.	221(2)	834-849	2019	DUA1	OsDUA1
45908	30298358	Wang X., Zhang H., Lu-Yuan Shao, Yan X., Peng H., Jie-Xiu Ouyang, Shao-Bo Li	Expression and function analysis of a rice oshsp40 gene under salt stress.	Genes Genomics			2018	HSP40	OsHSP40
45909	16504046	Mi-Jeong Yoo, Victor A Albert, Pamela S Soltis, Douglas E Soltis	Phylogenetic diversification of glycogen synthase kinase 3/SHAGGY-like kinase genes in plants.	BMC Plant Biol.	6	3	2006	_,_,_,_,_,_,_,_,_	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, TGW3, OsGSK5/OsSK41, OsSK41/OsGSK5,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsSK13/OsGSK6, OsSK13, OsGSK6, SK13, GSK6,GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, GSK4,OsSK12/OsGSK3, OsSK12, OsGSK3,  SK12, GSK3,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2,OsSK31/OsGSK9, OsSK31, OsGSK9, SK31, GSK9,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, SKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8
45910	0	Thitisaksakul M., Maria C. Arias, Dong S., Diane M. Beckles	Overexpression of GSK3-like Kinase 5 (OsGSK5) in rice (Oryza sativa) enhances salinity tolerance in part via preferential carbon allocation to root starch	Funct. Plant Biol.	44	705-719	2017	_,_,_,_,_,_,_,_,_	GL3.3, OsSK41, SK41, OsGSK5, GSK5, qTGW3, TGW3, OsGSK5/OsSK41, OsSK41/OsGSK5,OsSK12/OsGSK3, OsSK12, OsGSK3,  SK12, GSK3,OsSK31/OsGSK9, OsSK31, OsGSK9, SK31, GSK9,GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 ,OsSKgamma, SKgamma, OsSK11/ OsGSK2, OsSK11, OsGSK2, SK11, GSK2,OsSK23/OsGSK4, OsSK23, OsGSK4, SK23, GSK4,GSK4, Os GSK4, OsGSK4, OsSKetha, OsSKETHA, SKETHA, OsSK24/OsGSK8, OsSK24, OsGSK8, SK24, GSK8,GSK1, Os GSK1, OsGSK1, OsSK21/OsGSK1, OsSK21, SK21,OsSK13/OsGSK6, OsSK13, OsGSK6, SK13, GSK6
45911	29991784		The story of African rice, as told by genomics.	Nature	559(7713)	154	2018		
45912	30037991	Huang J., Li J., Zhou J., Wang L., Yang S., Hurst L.D., Li W.H., Tian D.	Identifying a large number of high-yield genes in rice by pedigree analysis, whole-genome sequencing, and CRISPR-Cas9 gene knockout.	Proc. Natl. Acad. Sci. U.S.A.	115(32)	E7559-E7567	2018	EXPB3,_,_,_,_,_,_,_,_,_,_,EXPB6,_,_,_,_,EXPB2,_,_,GGT,BGLU5,XOAT3,_,EXPB4	OsEXPB3, osaEXPb1.10, EXPb1.10,,,,,,,,,,,OsEXPB6, osaEXPb1.8, EXPb1.8,,OsbHLH113, bHLH113,,,OsEXPB2, OsaEXPb1.9, EXPb1.9,,,OsGGT,Os1bglu5, Os1Bglu5, 1bglu5,OsTBL9, TBL9, OsXOAT3,OsSTA41, STA41,OsEXPB4, OsaEXPb1.7, EXPb1.7
45913	30002253	Kuroha T., Nagai K., Gamuyao R., Wang D.R., Furuta T., Nakamori M., Kitaoka T., Adachi K., Minami A., Mori Y., Mashiguchi K., Seto Y., Yamaguchi S., Kojima M., Sakakibara H., Wu J., Ebana K., Mitsuda N., Ohme-Takagi M., Yanagisawa S., Yamasaki M., Yokoyama R., Nishitani K., Mochizuki T., Tamiya G., McCouch S.R., Ashikari M.	Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding.	Science	361(6398)	181-186	2018	SD1,EIL1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsEIL1, EIN3, OsEIN3, MHZ6, OsEIL1a, EIL1a
45914	30021872	Hofmann N.R.	The Dynamic Transcriptome: Using Clustered Time Points to Tease Apart Rice Tiller Angle Control.	Plant Cell	30(7)	1381-1382	2018	HSFA2D,LAZY1,WOX6,WOX11	HSfA2d, OsHsfA2d, OsHsf-08, rHsf7, HSF08, HSF7, OsHSF7, OsHSFA2dI, OsHSFA2dII, OsHSFA2dIII, OsHsfA6b, HsfA6b ,lazy1, LA1, OsLazy1,OsWOX6, Os WOX6, OsWOX12B,OsWOX11, Os WOX11, OsWOX12A
45915	29967288	Liao Y., Zhang X., Li B., Liu T., Chen J., Bai Z., Wang M., Shi J., Walling J.G., Wing R.A., Jiang J., Chen M.	Comparison of <i>Oryza sativa</i> and <i>Oryza brachyantha</i> Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions.	Plant Cell	30(8)	1729-1744	2018	_	
45916	30062598	Huang J., Liu H., Berberich T., Liu Y., Tao L.Z., Liu T.	Guanine Nucleotide Exchange Factor 7B (RopGEF7B) is involved in floral organ development in Oryza sativa.	Rice (N Y)	11(1)	42	2018	RAC6,RAC3,RAC7,RAC5,ROPGEF5,RAC2,RAC1	OsRacB, RacB, OsRac6,OsRac3,OSRAC7, OsRac7, ROP5, OsRop5,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsRacGEF1, RacGEF1, OsRopGEF5, Os RopGEF5, RopGEF5, OsRopGEF7B, RopGEF7B,OsRAC2, OsRac2,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
45917	29970857	Lin S., Nie P., Ding S., Zheng L., Chen C., Feng R., Wang Z., Wang L., Wang J., Fang Z., Zhou S., Ma H., Zhao H.	Quantitative Proteomic Analysis Provides Insights into Rice Defense Mechanisms against <i>Magnaporthe oryzae</i>.	Int J Mol Sci	19(7)		2018	_,_,_,_,GPX3,_,GSTU23,_,_,_,PHGPX,_,RLCK178,_,_,_,ALDH6B2     ,_,_,_,_,_,_,_,HXK5,GDH1,PR10A,_,_,CATB,_,HSP82A,_,_,TRXH,JIOSPR10,APX1,_	,prx27, PRX27, OsPRX27 ,prx86, PRX86, OsPRX86,,OsGpx3, GPX3, OsGPx03,,OsGSTU23,,CHI, OsCHI,RSOsPR10, RsOsPR10a, OsPR10a, OsPR10alpha, OsPR10, PR10,OsGpx2, GPX2, OsGPx02, PHGPX, ricPHGPX, riPHGPX ,,OsPti1a, OsRLCK178,OsGDI1, GDI1,,MDHAR, OsMDHAR, OsMDAR3, MDAR3, OsMDHAR3, MDHAR3, MDHAR1, OsMDHAR1,OsALDH6B2  ,prx62, OsPRX62,prx125, PRX125, OsPRX125 ,OsYchF1, YchF1, OsPM8ATP ,prx59, OsPRX59,prx12, PRX12, OsPRX12,,prx65, PRX65, OsPRX65,OsHXK5,OsGDH1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,RMtATPd2, OsMtATPd2, MtATPd2,,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,prx78, PRX78, OsPRX78,OsHSP82A, hsp82A, HSP90, OsHSP81, HSP81,,POD2, OsPOD2, PRX13, OSPRX13,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,JIOsPR10, OsPR10, PR10 ,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,UspA, OsUspA
45918	30055519	Zhang Z., Liu H., Sun C., Ma Q., Bu H., Chong K., Xu Y.	A C2H2 zinc-finger protein OsZFP213 interacts with OsMAPK3 to enhance salt tolerance in rice.	J. Plant Physiol.	229	100-110	2018		
45919	30030721	Shahriari-Farfani T., Shahpiri A., Taheri-Kafrani A.	Enhancement of Tryptic Digestibility of Milk beta-Lactoglobulin Through Treatment with Recombinant Rice Glutathione/Thioredoxin and NADPH Thioredoxin Reductase/Thioredoxin Systems.	Appl. Biochem. Biotechnol.	187(2)	649-661	2019	NTRB,TRXH,TRXH9,TRXH7	OsNTRB, NtrB,trxh, Trx-H, OsTRXh1, TRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1,OsTRXh9, OsTrx20,OsTRXh7, OsTrx1
45920	30060460	Kim D.H., Park S., Lee J.Y., Ha S.H., Lee J.G., Lim S.H.	A Rice B-Box Protein, OsBBX14, Finely Regulates Anthocyanin Biosynthesis in Rice.	Int J Mol Sci	19(8)		2018	_,_,BZIP48,C,RA	OsBBX14, BBX14, OsDBB3b, DBB3b,OsWD40-50, OsTTG1A, TTG1A, OsTTG1, TTG1 ,OsbZIP48, OsHY5, HY5,C, Cp, OsC1, Os-C1, OsMyb6, Myb6,Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2
45921	29974305	Chen L., Shahid M.Q., Wu J., Chen Z., Wang L., Liu X.	Cytological and transcriptome analyses reveal abrupt gene expression for meiosis and saccharide metabolisms that associated with pollen abortion in autotetraploid rice.	Mol. Genet. Genomics	293(6)	1407-1420	2018	HXK1,HXK3,MST6,_,MST8,_,MST1,RSUS3,SUT5,MTOPVIB,HXK10,CDKF2,HXK7,RSUS2,CDKG1	OsHXK1,OsHXK3,OsMST6,OsFbox217, Os_F0121, MOF, OsMOF,OsMST8, OSMST8,,OsMST1,RSus3(t), SUS3, SS3, OsScS3, RSs3, RSus3, OsSUS3, RSS3, OsEnS-111,OsSUT5(t), OsSUT5Z, OsSUT5,OsMTOPVIB,OsHXK10,OsCDKF2,OsHXK7,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,OsCDKG1
45922	30061724	Ochiai A., Ogawa K., Fukuda M., Ohori M., Kanaoka T., Tanaka T., Taniguchi M., Sagehashi Y.	Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi.	Sci Rep	8(1)	11434	2018	CAL1	OsCPT1, CPT1, DEFL7, OsDEFL7, OsDf-07, Df-07, OsPR12, PR12, DEF7, OsDEF7, OsAFP1, AFP1
45923	30005875	Toyomasu T., Goda C., Sakai A., Miyamoto K., Shenton M.R., Tomiyama S., Mitsuhashi W., Yamane H., Kurata N., Okada K.	Characterization of diterpene synthase genes in the wild rice species Oryza brachyatha provides evolutionary insight into rice phytoalexin biosynthesis.	Biochem. Biophys. Res. Commun.	503(3)	1221-1227	2018		
45924	30245543	Cook F., Hughes N., Nibau C., Orman-Ligeza B., Schatlowski N., Uauy C., Trafford K.	Barley <i>lys3</i> mutants are unique amongst shrunken-endosperm mutants in having abnormally large embryos.	J. Cereal Sci.	82	16-24	2018		
45925	30061746	Zhou C., Wang C., Liu H., Zhou Q., Liu Q., Guo Y., Peng T., Song J., Zhang J., Chen L., Zhao Y., Zeng Z., Zhou D.X.	Identification and analysis of adenine N6-methylation sites in the rice genome.	Nat Plants	4(8)	554-563	2018	ALKBH1	OsALKBH1
45926	30030651	Yang X., Ren Y., Cai Y., Niu M., Feng Z., Jing R., Mou C., Liu X., Xiao L., Zhang X., Wu F., Guo X., Jiang L., Wan J.	Overexpression of OsbHLH107, a member of the basic helix-loop-helix transcription factor family, enhances grain size.in rice (Oryza sativa L.).	Rice (N Y)	11(1)	41	2018	_,MCM2,_,CYCD7;1,MCM5,CYCA3;2,_,CYCB1;1,CYCA1;1,_,PIL11,CDKB2;1 ,CYCB2;2,_,CYCA2;1,LGS1,_,_,CYCD4;1,CDC2-2,MCM3,MCM4	CAK1, MAT1, OsCAK1, OsMAT1, CDKA1, OsCDKA1,OsMCM2,KN, OsKN, OsSYP111, SYP111,CycD7;1, CycD7;os;1, Orysa;CycD7;1, OsCYCD3, CYCD3,OsMCM5,CycA3;2, CycA3;os;2, Orysa;CycA3;2, CYCA2.1,Orysa;E2F2, OsE2F2, E2F2,CycB1;1, CycB1;os;1, Orysa;CycB1;1, OsCycB1;1, CyclaZm, CYCIaZm, OsCYCIaZm,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,OsWD40-83, WD40-83, OsCDT2, CDT2,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,OsWD40-109,  WD40-109, OsCDC20, CDC20 ,CycA2;1, CycA2;os;1, Orysa;CycA2;1, OsCYCA2;1, CYCA2.2,OsbHLH107, bHLH107,MAD2, OsMAD2,MAPK,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,cdc2Os-2, CDC2Os-2, CDKA-2, CDKA;2, Orysa;CDKA;2, Rcdc2-2, OsCDKA;2, OsCDKA2, CDKA2,OsMCM3,OsMCM4
45927	30078233	Minh-Thu PT., Kim J.S., Chae S., Jun K.M., Lee G.S., Kim D.E., Cheong J.J., Song S.I., Nahm B.H., Kim Y.K.	A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice.	Mol. Cells	41(8)	781-798	2018	PR1-22,_,WOX8,HD3A,_,DREB1F,_,_,_,DREB1A,_,_,FKF1,_,RAP1B,SCP44,_,_,_,NAC79,_,_	OsPR1#022, OsPR1-22,,OsWOX8, Os WOX8, OsWOX13, WOX13, OsWOX9B,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F,,,,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsTPS3, TPS3, OsLIS, LIS,OsbHLH079, OsbHLH79, bHLH079, bHLH79,OsFbox609, Os_F0370, OsFKF1,,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsSCP44,,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, COL15, OsCOL15/OsBBX26, Hd1-3,OsSTA246, STA246, OsBamy1, Bamy1, BAM2, OsBAM2,ONAC079, ONAC79,,LRK5, OsLRK5
45928	30113022	Li L.H., Lv M.M., Li X., Ye T.Z., He X., Rong S.H., Dong Y.L., Guan Y., Gao X.L., Zhu J.Q., Xu Z.J.	[The Rice OsDUF810 Family: OsDUF810.7 May be Involved in the Tolerance to Salt and Drought].	Mol. Biol. (Mosk.)	52(4)	567-575		DUF810.3,DUF810.4,DUF810.5,DUF810.2,DUF810.6,DUF810.7,_	OsDUF810.3,OsDUF810.4,OsDUF810.5,OsDUF810.2,OsDUF810.6,OsDUF810.7,OsSTA89, STA89, OsDUF810.1, DUF810.1 
45929	29988153	Yao L., Zhang Y., Liu C., Liu Y., Wang Y., Liang D., Liu J., Sahoo G., Kelliher T.	OsMATL mutation induces haploid seed formation in indica rice.	Nat Plants	4(8)	530-533	2018	_	OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MATL
45930	29991671	Cho L.H., Yoon J., Wai A.H., An G.	<i>Histone Deacetylase 701 (HDT701)</i> Induces Flowering in Rice by Modulating Expression of <i>OsIDS1</i>.	Mol. Cells	41(7)	665-675	2018	GI,IDS1,RFT1,SE1,HD3A,EF1,HDT1	OsGI, Gi, Os-GI,OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2 ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsHDT1, HDT701
45931	30071224	Yu X., Wei S., Yang Y., Ding Z., Wang Q., Zhao J., Liu X., Chu X., Tian J., Wu N., Fan Y.	Identification of cadmium-binding proteins from rice (Oryza sativa L.).	Int. J. Biol. Macromol.	119	597-603	2018		
45932	30018622	Ricachenevsky F.K., Punshon T., Lee S., Oliveira B.H.N., Trenz T.S., Maraschin F.D.S., Hindt M.N., Danku J., Salt D.E., Fett J.P., Guerinot M.L.	Elemental Profiling of Rice FOX Lines Leads to Characterization of a New Zn Plasma Membrane Transporter, OsZIP7.	Front Plant Sci	9	865	2018	ZIP7	OsZIP7
45933	30026288	Qian D., Chen G., Tian L., Qu L.Q.	OsDER1 Is an ER-Associated Protein Degradation Factor That Responds to ER Stress.	Plant Physiol.	178(1)	402-412	2018	CDC48E,HSP26,_,HSP70,HRD1,SAR1B,_,_,SPP1,HSP17.3,HSP70CP1,DER1,_,HRD3,SPP2,SAR1C,HSP71.1,_,SAR1A,_,_,HSP18.0,PSD128	OsCDC48E, OsCDC48-2, CDC48-2,OsHSP26, Oshsp26, OsHSP26.7, HSP26.7,CRT, OsCRT,OsHSP70, OsEnS-45, EnS-45,OsHrd1, Hrd1,OsARL1f, ARL1f, OsSar1b, Sar1b,PDIL5;2, OsPDIL5;2, PDIL5-2, OsPDIL5-2,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,OsSPP1,OsHsp17.3, OsHSP17.3, Oshsp17.3 ,OsHsp70CP1,OsDER1,,OsHrd3, Hrd3,OsSPP2,OsARL1d, ARL1d, OsSar1c, Sar1c,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsDER2, DER2,OsARL1e, ARL1e, OsSar1b, Sar1b, OsSar1a, Sar1a,HSP70, hsp70, OsHSP70 , OsMed37_8, Med37_8 ,PDIL2;1, OsPDIL2;1, PDIL2-1, OsPDIL2-1,OsHSP18.0-CI, HSP18.0-CI, OsHsp18.0, OsHSP18.0, Oshsp18.0, OsSHSP1, SHSP1, OsMSR3, MSR3, OsHSP20, HSP20, OsHSP18.6, HSP18.6,OsCDC48, CDC48, OsCDC48-1, CDC48-1
45934	30073130	Ashwini N., Sajeevan R.S., Udayakumar M., Nataraja K.N.	Identification of splice variant of <i>OsGBF1</i> in <i>Oryza sativa</i> ssp. <i>indica</i> genotypes under salinity stress.	3 Biotech	8(8)	345	2018		
45935	30043395	Caine R.S., Yin X., Sloan J., Harrison E.L., Mohammed U., Fulton T., Biswal A.K., Dionora J., Chater C.C., Coe R.A., Bandyopadhyay A., Murchie E.H., Swarup R., Quick W.P., Gray J.E.	Rice with reduced stomatal density conserves water and has improved drought tolerance under future climate conditions.	New Phytol.	221(1)	371-384	2019	EPF1	OsEPF1
45936	30068603	Yoshida H., Tanimoto E., Hirai T., Miyanoiri Y., Mitani R., Kawamura M., Takeda M., Takehara S., Hirano K., Kainosho M., Akagi T., Matsuoka M., Ueguchi-Tanaka M.	Evolution and diversification of the plant gibberellin receptor GID1.	Proc. Natl. Acad. Sci. U.S.A.	115(33)	E7844-E7853	2018	GID1,SLR1	gid1, OsGID1, Thl, Os GID1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18
45937	30111841	Li S., Tian Y., Wu K., Ye Y., Yu J., Zhang J., Liu Q., Hu M., Li H., Tong Y., Harberd N.P., Fu X.	Modulating plant growth-metabolism coordination for sustainable agriculture.	Nature	560(7720)	595-600	2018	XA13,_,LHCA1,SLR1,DYE1,PSBS1,GLN1;2,SD1,GS2,CDKB2;1 ,SWEET12,PSAD,GLT2,TPS1,AMT1;2,PSAE,CYCA1;1,_,TPP1,_,CAB1R,GS2,AMT1;1	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsGIF3, GIF3, OsGIF1, GIF1, MKB3,OsLhca1, Lhca1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,cab, cab-n8, Lhca4, OsLhca4,OsPsbS1, PsbS1, psbS,OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2,OsGS2, GLN2, RGS31,Orysa;CDKB2;1, OsCDKB2;1, cdc2Os3, Oscdc20s-3, cdc20s-3, Orysa;CDKB;2, CYCB2.1 ,OsSWEET12,PsaD, OsPsaD,OsGLT2, OsNADH-GOGAT2, NADH-GOGAT2, OsGOGAT2,OsTPS1,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,PsaE, OsPsaE,CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 ,OsTPP1, OsTPS,OsLhca3, Lhca3,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12
45938	30082786	Li Z., Fu X., Wang Y., Liu R., He Y.	Polycomb-mediated gene silencing by the BAH-EMF1 complex in plants.	Nat. Genet.	50(9)	1254-1261	2018	SHL2,_,EBL1,SHL1	OsSHL2,DFO1, EMF1, OsDFO1, OsEMF1, CCP1, OsCCP1,qSSR8, OsEBL1,OsSHL1
45939	30166490	Deutsch C.A., Tewksbury J.J., Tigchelaar M., Battisti D.S., Merrill S.C., Huey R.B., Naylor R.L.	Increase in crop losses to insect pests in a warming climate.	Science	361(6405)	916-919	2018		
45940	29858585	Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.	Publisher Correction: Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.	Nat. Genet.	50(8)	1196	2018		
45941	30086362	Zhang H., Ma J., Liu J., Mu Y., Tang H., Liu Y., Chen G., Jiang Q., Chen G., Wei Y., Zheng Y., Lan X.	Molecular characterization of the TaWTG1 in bread wheat (Triticum aestivum L.).	Gene	678	23-32	2018	WTG1	OTUB1, OsOTUB1, OsOTUB1.1, OsOTUB1.2, qNPT1, OsWTG1
45942	30099722	P?rez L., Soto E., Villorbina G., Bassie L., Medina V., Mu?oz P., Capell T., Zhu C., Christou P., Farr? G.	CRISPR/Cas9-induced monoallelic mutations in the cytosolic AGPase large subunit gene APL2 induce the ectopic expression of APL2 and the corresponding small subunit gene APS2b in rice leaves.	Transgenic Res.	27(5)	423-439	2018	AGPL1,AGPL3,AGPS1,AGPL4,AGPS2,AGPL2,_	OsAGPL1, OsAPL1, APL1, OsAGPL3, AGPL3,OsAGPL3, APL3, OsAPL3, AGPlar, OsAGPL1,OsAGPS1, APS1, OsAPS1, AGPsma,OsAGPL4, APL4, OsAPL4, OsSTA193,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2, GIF2, GAS1 ,Pho1, OsPho1, OsPHOL, PHOL
45943	30121733	Das N., Bhattacharya S., Bhattacharyya S., Maiti M.K.	Expression of rice MATE family transporter OsMATE2 modulates arsenic accumulation in tobacco and rice.	Plant Mol. Biol.	98(1-2)	101-120	2018	MATE2	OsMATE2
45944	30171448	Deng X., Gan L., Liu Y., Luo A., Jin L., Chen J., Tang R., Lei L., Tang J., Zhang J., Zhao Z.	Locating QTLs controlling overwintering seedling rate in perennial glutinous rice 89-1 (Oryza sativa L.).	Genes Genomics	40(12)	1351-1361	2018		
45945	30127798	Nounjan N., Chansongkrow P., Charoensawan V., Siangliw J.L., Toojinda T., Chadchawan S., Theerakulpisut P.	High Performance of Photosynthesis and Osmotic Adjustment Are Associated With salt tolerance Ability in Rice Carrying drought tolerance QTL: Physiological and Co-expression Network Analysis.	Front Plant Sci	9	1135	2018	_,_,_	GSA, GSAT, HEML,,
45946	30158947	Luo B., Chen J., Zhu L., Liu S., Li B., Lu H., Ye G., Xu G., Fan X.	Overexpression of a High-Affinity Nitrate Transporter <i>OsNRT2.1</i> Increases Yield and Manganese Accumulation in Rice Under Alternating Wet and Dry Condition.	Front Plant Sci	9	1192	2018	NRAMP6,NRAMP3,NRT2.1,NRAMP5	OsNRAMP6, Nramp6, l-NRAMP6, s-NRAMP6,OsNramp3, OsNRAMP3,OsNRT2.1, OsNRT2.2,OsNRAMP5, OsNramp5
45947	30077370	Amir Hossain M., Ahn C.H., Lee I.S., Jeon J.S., An G., Park P.B.	Isolation of a novel protein phosphatase2C in rice and its response to gibberellin.	Biochem. Biophys. Res. Commun.	503(3)	1987-1992	2018		
45948	30466580	Shi Q.S., Wang K.Q., Li Y.L., Zhou L., Xiong S.X., Han Y., Zhang Y.F., Yang N.Y., Yang Z.N., Zhu J.	OsPKS1 is required for sexine layer formation, which shows functional conservation between rice and Arabidopsis.	Plant Sci.	277	145-154	2018		
45949	30124949	Song S., Wang G., Hu Y., Liu H., Bai X., Qin R., Xing Y.	OsMFT1 increases spikelets per panicle and delays heading date in rice by suppressing Ehd1, FZP and SEPALLATA-like genes.	J. Exp. Bot.	69(18)	4283-4293	2018	MADS5,RFT1,RAP1B,_,PAP2,MADS24,LHS1,LFL1,GHD7,HD3A,MADS7,FZP,EF1	OsMADS5, FDRMADS2,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMFT1, MFT1,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3,OsLFL1, OsSTA29, STA29,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS7, OsMADS45, FDRMADS1, RMADS216, AGL6, M79, MADS45, Os MADS7, Os MADS45, OsMADS7/45,fzp*, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 
45950	30210516	Hu Q., Zhang C., Xue Z., Ma L., Liu W., Shen Y., Ma B., Cheng Z.	Osrad17 Is Required for Meiotic Double-Strand Break Repair and Plays a Redundant Role With OsZIP4 in Synaptonemal Complex Assembly.	Front Plant Sci	9	1236	2018	_,COM1,TOP6A1,_,RAD17,_,RMC1	OsZIP4, ZIP4, SPO22,OsCOM1,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1,OsMSH5, MSH5,OsRAD17,OsRAD1, RAD1 ,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
45951	30120350	Endo A., Egawa C., Oohashi M., Meguro-Maoka A., Shimosaka E., Sato Y.	Ectopic expression of mutated type 2C protein phosphatase OsABI-LIKE2 decreases abscisic acid sensitivity in Arabidopsis and rice.	Sci Rep	8(1)	12320	2018	_,_	OsPP2C53, PP2C53, OsPP81, OsABIL2, ABIL2,OsPYL/RCAR1, PYL1, OsPYL1, OsPYL4, PYL4
45952	29771278	Ding W., Wu J., Ye J., Zheng W., Wang S., Zhu X., Zhou J., Pan Z., Zhang B., Zhu S.	A Pelota-like gene regulates root development and defence responses in rice.	Ann. Bot.	122(3)	359-371	2018	SPLHM47,PR1B	splHM47, HM47, OsPelo, OsPELO, PELO, LML1, OsLML1,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1
45953	30151557	Shahpiri A., Mohammadzadeh A.	Bioaccumulation of Arsenic by Engineered Escherichia coli Cells Expressing Rice Metallothionein Isoforms.	Curr. Microbiol.	75(11)	1537-1542	2018	MTI3A,MTI2B,MTI1B,MTII1A	OsMT3a, MT3a, OsMT-I-3a, MT-I-3a, MTe, met2, OsMT3, MT3, OsMTI-3a, MTI-3a,OsMT2c, OsMT-I-2b, MT2c, MT-I-2b, MTc, met5, ricMT, OsMT2,OsMT1b, MT1b, OsMT-I-1b, OsMTI-1b, MT-I-1b, MTI-1b, MT1La, OsMT1La, OsMT1,OsMT4, OsMT-II-1a, MT4, MT-II-1a
45954	30096168	Swamy B.P.M., Descalsota G.I.L., Nha C.T., Amparado A., Inabangan-Asilo MA., Manito C., Tesoro F., Reinke R.	Identification of genomic regions associated with agronomic and biofortification traits in DH populations of rice.	PLoS ONE	13(8)	e0201756	2018		
45955	30158116	Liu Y., Cao Y., Zhang Q., Li X., Wang S.	A Cytosolic Triosephosphate Isomerase Is a Key Component in Xa3/XA26-Mediated Resistance.	Plant Physiol.	178(2)	923-935	2018	WRKY45,TPI,XA3,WRKY13,DR8,C3H12	OsWRKY45,tpi*, tips, TI, OsTPI1, TPI1, OsTPI1.1, OsTPI1.2 ,Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,OsWRKY13,OsDR8, OsXNP, FOXRED1,OsC3H12
45956	30068540	Xiong H., Yu J., Miao J., Li J., Zhang H., Wang X., Liu P., Zhao Y., Jiang C., Yin Z., Li Y., Guo Y., Fu B., Wang W., Li Z., Ali J., Li Z.	Natural Variation in <i>OsLG3</i> Increases drought tolerance in Rice by Inducing ROS Scavenging.	Plant Physiol.	178(1)	451-467	2018	SODCC2,_,APX3,APX8,POX22.3,ITPK4,APX6,APX5,DHN1,DSM1,SODCC1,SODB,RAB16A,_,_,POX8.1,APX1,CATB,_,LEA17,APX2,ERF62,RAB16C,_	Cu/Zn-SOD, Cu/Zn- SOD, OsSODB, OsSOD3, SodCc2, Os SodCc2, sodB, OsSodB, RSODB, OssodCc1, OsCSD1.1, CSD1.1, OsCDS1, OsSOD3-CU/Zn, SOD3-CU/Zn, CuZnSOD2, Cu/ZnSOD2,prx41, OsPrx41, OsPOX8.1, POX8.1, OsPOD2, POD2,OsAPx3, OsAPx03, OSAPX3, APx3, mAPX,OsAPx8, OsAPx08, OSAPX8, APx8, OsAPX8,POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9,OsITPK4, OsITP5/6K-4, ITP5/6K-4,OsAPx6, OsAPx06, OSAPX6, APx6,OsAPx5, OsAPx05, OSAPX5, APx5,LIP9, OsLIP9, lip9, DHN1, DIP1, OsDip1, OsLEA23, OsDhn1, COR410, OsLEA23/DIP1, DIP1/OsLEA23,OsDSM1,sodCc1, SODCC.1, sodA, RSODA, OsSOD1, OsCSD2, OsSodA, SodCc2, OsSODA1, SODCc1-Cu/Zn, OsCu/Zn-SOD2, Cu/Zn-SOD2, OsCSD1.2, CSD1.2, OsSODCc1-Cu/Zn, SODCc1-Cu/Zn, CuZnSOD1, Cu/ZnSOD1,SodB, Fe-SOD, Fe- SOD, OsFe-SOD, OsFe-SODa, OsFe-SODb, OsFSD1.2, FSD1.2, FeSOD2,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsSRO1c, SRO1c,POX8.1, prx110, POX8,OsAPX1, APXa, OsAPx01, OsAPx1, OSAPX1, APx1, cAPX,CatB, CAT-B, OsCatB, OsCATB, OsCAT1B, CAT1B, CAT2, OsCAT2,OsMYB48, MYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsAPX2, OsAPx02, APXb, OsAPx2, OSAPX2, APx2, cAPX, OsAPX1, APX1,OsERF#062, OsERF062, OsERF62, AP2/EREBP#125, AP2/EREBP125, AP2-125, OsLG3, LG3, OsLG3/OsAP2-125, OsAP2-125,rab21, OsLEA27, rab16C,prx16, OsPOD1, POD1
45957	30092010	Mishra N., Srivastava A.P., Esmaeili N., Hu W., Shen G.	Overexpression of the rice gene OsSIZ1 in Arabidopsis improves drought-, heat-, and salt-tolerance simultaneously.	PLoS ONE	13(8)	e0201716	2018	SIZ1	OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 
45958	30143992	Jin Y., Pan W., Zheng X., Cheng X., Liu M., Ma H., Ge X.	OsERF101, an ERF family transcription factor, regulates drought stress response in reproductive tissues.	Plant Mol. Biol.	98(1-2)	51-65	2018	ABA8OX3,P5CS,DREB2A,_,ABA1,OAT,_,LEA3-1,_,ERF101	OsABA8OX3, OsABA8ox3, CYP707A7, OsAba-ox3, OsABA8ox3,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,POD2, OsPOD2, PRX13, OSPRX13,OsABA1, Zep1, OsAba1, Aba2, OsAba2, OsZep1, Zep, OsZep, Aba1, OsABA2, Osaba1, OsZEP-1, OsZEP, OSZEP1, ZEP1, ZEP,OsOAT, delta-OAT,prx46, POD1, OSPOD1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,RD22, OsBURP03, OsBURP3,OsERF#101, OsERF101, OsDERF6, DERF6, AP2/EREBP#089, AP2/EREBP89, OsRap2.6, Rap2.6
45959	30127769	Doucour? H., P?rez-Quintero AL., Reshetnyak G., Tekete C., Auguy F., Thomas E., Koebnik R., Szurek B., Koita O., Verdier V., Cunnac S.	Functional and Genome Sequence-Driven Characterization of <i>tal</i> Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Strains.	Front Microbiol	9	1657	2018	11N3,TFX1,ERF123	OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,OsbZIP73, bZIP73, OsTFX1,OsERF#123, OsERF123, AP2/EREBP#066, AP2/EREBP66
45960	30073557	Zhang D., Wang Y., Shen J., Yin J., Li D., Gao Y., Xu W., Liang J.	OsRACK1A, encodes a circadian clock-regulated WD40 protein, negatively affect salt tolerance in rice.	Rice (N Y)	11(1)	45	2018	DREB1C,TPS8,RMC,_,NCED3,ERF91,MSRMK2,_,CDPK4,SIK1,DREB1E,NCED2,DREB1B,DREB1G,RACK1,DREB1A,_,ERF133	OsDREB1C, CBF1, ERF26, OsERF026, OsERF#026, OsERF26, AP2/EREBP#098, AP2/EREBP98,OsTPS8, OsTPS1, TPS1,OsRMC, OsRLK, OsDUF26, DUF26,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsERF#091, OsERF091, OsERF91, AP59, OsAP59, AP2/EREBP#147, AP2/EREBP147, OsBIERF3, BIERF3,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsTCP19, TCP19,OsCDPK4, OsCPK4, CPK4, CDPK1,OsSIK1, OsER2, ER2, OsERL, ERL,OsDREB1E, OsERF030, OsERF#030, OsERF30, ERF30, AP2/EREBP#160, AP2/EREBP160, OsDREB1-1,OSNCED2, OsNCED2, OsNCED5, NCED5,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,RACK1A, RWD, OsWD40-21, OsRACK1, OsRACK1A,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsMYB2, MYB2,OsERF#133, OsERF133, AP2/EREBP#065, AP2/EREBP65, OsDREB1H, DREB1H, OsDREB1m, DREB1m
45961	30159598	Zhou J., Xin X., He Y., Chen H., Li Q., Tang X., Zhong Z., Deng K., Zheng X., Akher S.A., Cai G., Qi Y., Zhang Y.	Multiplex QTL editing of grain-related genes improves yield in elite rice varieties.	Plant Cell Rep.			2018	GW2,GN1A,LK3	OsGW2,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
45962	30170113	Cunha J.R., Carvalho F.E.L., Lima-Neto MC., Jardim-Messeder D., Cerqueira J.V.A., Martins M.O., Fontenele A.V., M?rgis-Pinheiro M., Komatsu S., Silveira J.A.G.	Proteomic and physiological approaches reveal new insights for uncover the role of rice thylakoidal APX in response to drought stress.	J Proteomics	192	125-136	2019		
45963	29704467	Ma W., Zou L., Zhiyuan J.I., Xiameng X.U., Zhengyin X.U., Yang Y., Alfano J.R., Chen G.	Xanthomonas oryzae pv. oryzae TALE proteins recruit OsTFIIAgamma1 to compensate for the absence of OsTFIIAgamma5 in bacterial blight in rice.	Mol. Plant Pathol.	19(10)	2248-2262	2018	XA13,_,11N3,XA5	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,OsSWEET14, SWEET14, Os11N3, Os-11N3, Xa41(t), xa41, Os11N3/SWEET14,xa5, xa-5, Xa5, TFIIAy, OsTFIIAgamma5, TFIIAgamma5, OsTFIIAgamma5/Xa5
45964	30190374	Tian L., Chou H.L., Zhang L., Hwang S.K., Starkenburg S.R., Doroshenk K.A., Kumamaru T., Okita T.W.	RNA-binding protein RBP-P Is Required for Glutelin and Prolamine mRNA Localization in Rice Endosperm Cells.	Plant Cell	30(10)	2529-2552	2018	_,_,_,RBP10,RBP-P,NHL25,EXPA16,_,_,RBP-L,_,RBP-208,NAC129,RBP213,RR6,_,_,_,CRL4,IAA6,_,ABCB12,_,_,_,_,_,_	,Prol-16, OsEnS-87, EnS-87, pro16.1,,OsRBP10, RBP-10, OsRBP-10,OsRBP-P,OsNHL25,OsEXPA16, OsEXP16, osaEXPa1.27,OsWD40-18, WD40-18, LUG,Prol-20, pro13b.1, PROLM19 ,OsRBP-L,,OsRBP-208,ONAC129,OsRBP213, RBP-213, OsRBP-213,OsRR6, rr6, Rra6, OsRRA6,,YR16, YR29, rNBS42,,CHARK, S/T kinase, OsCRL4, OsHKL1, OsCDP,OsIAA6,,OsABCB12, OsPGP12, PGP12,Prol-02, pro10.3,OsEnS-108, EnS-108, DEFL,,CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,Prol-12, pro13b.18,
45965	30250128	Wang M., Li W., Fang C., Xu F., Liu Y., Wang Z., Yang R., Zhang M., Liu S., Lu S., Lin T., Tang J., Wang Y., Wang H., Lin H., Zhu B., Chen M., Kong F., Liu B., Zeng D., Jackson S.A., Chu C., Tian Z.	Parallel selection on a dormancy gene during domestication of crops from multiple families.	Nat. Genet.	50(10)	1435-1441	2018	G	OsG
45966	30190406	Wang J., Zhou L., Shi H., Chern M., Yu H., Yi H., He M., Yin J., Zhu X., Li Y., Li W., Liu J., Wang J., Chen X., Qing H., Wang Y., Liu G., Wang W., Li P., Wu X., Zhu L., Zhou J.M., Ronald P.C., Li S., Li J., Chen X.	A single transcription factor promotes both yield and immunity in rice.	Science	361(6406)	1026-1028	2018	WFP,WRKY45,DEP1	OsSPL14, SPL14, IPA1, WFP/IPA1, OsSPL14/WFP/IPA1,OsWRKY45,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
45967	30201704	Kritee K., Nair D., Zavala-Araiza D., Proville J., Rudek J., Adhya T.K., Loecke T., Esteves T., Balireddygari S., Dava O., Ram K., S R A., Madasamy M., Dokka R.V., Anandaraj D., Athiyaman D., Reddy M., Ahuja R., Hamburg S.P.	High nitrous oxide fluxes from rice indicate the need to manage water for both long- and short-term climate impacts.	Proc. Natl. Acad. Sci. U.S.A.	115(39)	9720-9725	2018		
45968	30254029	Dong C., He F., Berkowitz O., Liu J., Cao P., Tang M., Shi H., Wang W., Li Q., Shen Z., Whelan J., Zheng L.	Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<i>Oryza sativa</i>).	Plant Cell	30(10)	2267-2285	2018	RSP29,LTN1,RSZP21A,SCL26,SRP33B,SRP33A,RSZP36,SRP20,SCL30B,SCL57,_,SCL30A,SC35B,_,RSZP37B,RSZP37A,SCL25,_,SC35A,SULTR1;1,RSP33,SULTR3;2,_,_,SRP32,_	OsRS29, Os-RS29, OsRSp29, Os-RSp29,LTN1, OsPHO2, PHO2.1, PHO2.2, PHO2, OsUBC35, UBC35,Os-RSZ21a, OsRSZ21a, Os-RSZp21a, OsRSZp21a,Os-SCL26, OsSCL26,Os-SR33, OsSR33, SR33, OsSRp33b, Os-SRp33b,Os-SR33a, OsSR33a, SR33a, OsSRp33a, Os-SRp33a,Os-RS2Z36, OsRS2Z36, Os-RSZ36, OsRSZ36, RSZ36,Os-SR40, OsSR40, SR40, OsSRp20, Os-SRp20,OsSCL30, Os-SCL30, SCL30, OsSCL30b, Os-SCL30b,Os-SCL57, OsSCL57,,Os-SCL30a, OsSCL30a, SCL30a,OsSC32, Os-SC32, SC32, OsSC35b, Os-SC35b,OsIRL3, IRL3,Os-RS2Z38, OsRS2Z38, Os-RSZ37b, OsRSZ37b,Os-RS2Z37, OsRS2Z37, RS2Z37, Os-RSZ37a, OsRSZ37a,Os-SCL25, OsSCL25,OsSPX-MFS1, SPX-MFS1,Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a,OsSultr1;1, OsSul1;1, Sul1;1, OsSultr1;1(a), OsSultr1;1(b),OsRS33, Os-RS33, OsRSp33, Os-RSp33, RS33, RS33.2,OsSultr3;2, OsSul3;2,OsPOP1, POP1,OsMGD, MGD,Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32,Hwi2, OsSub9, SUB9
45969	30242038	Zhu C., Peng Q., Fu D., Zhuang D., Yu Y., Duan M., Xie W., Cai Y., Ouyang Y., Lian X., Wu C.	The E3 Ubiquitin Ligase HAF1 Modulates Circadian Accumulation of EARLY FLOWERING3 to Control heading date in Rice under Long-Day Conditions.	Plant Cell	30(10)	2352-2367	2018	GHD7,HD2,EF1,HIP1,PRR59,CCA1,SE1,RFT1,TOC1,HD3B,GI	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,Hd2(t), Hd2, qHD2(t), OsPRR37, Os-PRR37, PRR37, Prr4, OsPRR4, DTH7, OsCCT28, Ghd7.1, PRR37/Hd2, EH7-2, EH7-2/Hd2, Hd2/PRR37, PRR37-1a, PRR37-1b, PRR37-1c, PRR37-2a, PRR37- 2, HD7.2,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsHIP1, HAF1, OsHAF1,OsPRR59, Os-PRR59, Prr5, OsPRR5, OsCCT38,OsCCA1, OsLHY, LHY, LHY-like_chr.8, COC1,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsTOC1, OsPRR1, Os-PRR1, PRR1, OsRRA21, OsCCT07,Hd17, EF7, Ef7, OsELF3-1, OsELF3, ELF3, ELF3_chr.6, OsELF3.1, ELF3.1,OsGI, Gi, Os-GI
45970	30190417	Tao Y., Wang J., Miao J., Chen J., Wu S., Zhu J., Zhang D., Gu H., Cui H., Shi S., Xu M., Yao Y., Gong Z., Yang Z., Gu M., Zhou Y., Liang G.	The spermine synthase OsSPMS1 Regulates Seed Germination, grain size, and Yield.	Plant Physiol.	178(4)	1522-1536	2018	SPMS2,SPDS2	OsSPMS2,OsSPDS2, OsSPMS1, SPMS1
45971	30237804	Ni E., Zhou L., Li J., Jiang D., Wang Z., Zheng S., Qi H., Zhou Y., Wang C., Xiao S., Liu Z., Zhou H., Zhuang C.	<i>OsCER1</i> Plays a Pivotal Role in Very-Long-Chain Alkane Biosynthesis and Affects Plastid Development and Programmed Cell Death of Tapetum in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1217	2018	OSC6,CYP704B2,_,ABCG15,CER1,RAFTIN1,WDA1,_,TDR,NEF1	Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,OsCYP704B2,OsMS2, MS2, OsDPW, DPW, DPW1,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsCER1, OsGL1-4, Os CER1,OsRAFTIN1, BURP13, OsBURP13, Os RAFTIN1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsbHLH142, bHLH142, TIP2, OsTIP2,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,Os NEF1, OsNEF1
45972	30824000	Jia S., Xiong Y., Xiao P., Wang X., Yao J.	OsNF-YC10, a seed preferentially expressed gene regulates grain width by affecting cell proliferation in rice.	Plant Sci.	280	219-227	2019		
45973	30267474	Xiao Y., Liu D., Zhang G., Gao S., Liu L., Xu F., Che R., Wang Y., Tong H., Chu C.	Big Grain3, encoding a purine permease, regulates grain size via modulating cytokinin transport in rice.	J Integr Plant Biol			2018	RR2,RR1,LOG1,RR4,PUP4,PUP7,IPT9,_	rr2, Osrr2, OsRR2, Rra10, OsRRA10,rr1, OsRR1, Rra9, OsRRA9,LOG1, LOG, Log, log,rr4, OsRR4, Rra3, OsRRA3,OsPUP4, BG3/OsPUP4, BG3, OsBG3,OsPUP7,OsIPT9,CYP735A4, OsCYP735A4
45974	30190132	Yang J., Ji L., Zhu B., Yuan X., Jin D., Xie G.	OsCML16 interacts with a novel CC-NBS-LRR protein OsPi304 in the Ca2+/Mg2+ dependent and independent manner in rice.	Biochem. Biophys. Res. Commun.	504(1)	346-351	2018		
45975	30295905	Zhang Z., Li J., Tang Z., Sun X., Zhang H., Yu J., Yao G., Li G., Guo H., Li J., Wu H., Huang H., Xu Y., Yin Z., Qi Y., Huang R., Yang W., Li Z.	Gnp4/LAX2, a RAWUL protein, interferes with the OsIAA3-OsARF25 interaction to regulate grain length via the auxin signaling pathway in rice.	J. Exp. Bot.	69(20)	4723-4737	2018	IAA17,ILI5,LAX2,ERF142,ERF3,ARF6B,_,IAA3,ILI6,GLW7 	OsIAA17,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsLAX2, Gnp4/LAX2, Gnp4,OsERF#142, OsERF142, AP2/EREBP#049, AP2/EREBP49, SMOS1, OsSMOS1, SHB, OsAP2-EREBP-049, RLA1, RLA1/SMOS1, OsERF142/SMOS1,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsARF6b, OsARF25, ARF25,GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7,OsIAA3,ILI6, OsILI6, PGL1, OsPGL1,OsSPL13, SPL13
45976	30232356	He Q., Yang L., Hu W., Zhang J., Xing Y.	Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle.	Sci Rep	8(1)	14051	2018	RR1,RR11,IAA23,PAP2,NAC2,HAP2F,IAA4,EF1,IAA24,IAA8,IAA28,HAP3F,IAA18,CKX5,IAA11,IAA12,IAA14,HD3A,GN1A,JAR2,GL1,IAA27,D14,_,RFT1,PIN5B,HOX1,IAA30	rr1, OsRR1, Rra9, OsRRA9,OsRR11, Rra8, OsRRA8, RR8,OsIAA23,MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2 ,OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2,OsHAP2F, NF-YA, CBF-B, NF-YA10, OsNF-YA10, NFYA10,OsIAA4,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,OsIAA24,OsIAA8,OsIAA28,OsHAP3F, NF-YB, CBF-A, NF-YB10, OsNF-YB10, NFYB10,OsIAA18,OsCKX5, ckx5,OsIAA11,OsIAA12,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,gl1, NUDA/GL-1, NUDA/GL1, NUDA, GL-1, OsWOX3B, OsWOX2, OsWOX3, Os WOX3, WOX3B, WOX2, WOX3,OsIAA27,d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,Os_F0701, OsAFB6, AFB6,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,PIN5C, OsPIN5c, OsPIN5b,Oshox1, OsHox1,OsIAA30
45977	30466604	Zhu X., Teng X., Wang Y., Hao Y., Jing R., Wang Y., Liu Y., Zhu J., Wu M., Zhong M., Chen X., Zhang Y., Zhang W., Wang C., Wang Y., Wan J.	FLOURY ENDOSPERM11 encoding a plastid heat shock protein 70 is essential for amyloplast development in rice.	Plant Sci.	277	89-99	2018		
45978	29955860	Zahraeifard S., Foroozani M., Sepehri A., Oh D.H., Wang G., Mangu V., Chen B., Baisakh N., Dassanayake M., Smith A.P.	Rice H2A.Z negatively regulates genes responsive to nutrient starvation but promotes expression of key housekeeping genes.	J. Exp. Bot.	69(20)	4907-4919	2018		
45979	30260973	Chithrameenal K., Alagarasan G., Raveendran M., Robin S., Meena S., Ramanathan A., Ramalingam J.	Genetic enhancement of phosphorus starvation tolerance through marker assisted introgression of OsPSTOL1 gene in rice genotypes harbouring bacterial blight and blast resistance.	PLoS ONE	13(9)	e0204144	2018	PIKH,PSTOL1	Pi-kh, Pi k-h, Pi54, Pi54rh, Pi-k(h), Pik-h, Pikh,Pstol1, OsPSTOL1, Pstol1/OsPupK46-2, OsPupK46-2, Pup1, PHO
45980	30203325	Chen H.C., Cheng W.H., Hong C.Y., Chang Y.S., Chang M.C.	The transcription factor Osbhlh035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively.	Rice (N Y)	11(1)	50	2018	_,ABA8OX1,HKT6,_,_,HKT8	OsbHLH035, bHLH035, OsbHLH35, bHLH35,OsABA8OX1, CYP707A5, OsCYP707A5, ABA8ox1, OsABA8ox1,OsHKT6, OsHKT1;3, HKT1;3,OsAAO3, AAO3 ,OsABA2, ABA2,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
45981	30348320	Kappara S., Neelamraju S., Ramanan R.	Down regulation of a heavy metal transporter gene influences several domestication traits and grain Fe-Zn content in rice.	Plant Sci.	276	208-219	2018		
45982	30144334	Liu C., Xue Z., Tang D., Shen Y., Shi W., Ren L., Du G., Li Y., Cheng Z.	Ornithine delta-aminotransferase is critical for floret development and seed setting through mediating nitrogen reutilization in rice.	Plant J.	96(4)	842-854	2018	OAT	OsOAT, delta-OAT
45983	30255457	Zheng X., Chen L., Li X.	Arabidopsis and rice showed a distinct pattern in ZIPs genes expression profile in response to Cd stress.	Botanical Studies	59(1)	22	2018	ZIP6,ZIP1,ZIP2,IRT2,_,_,IRT1,ZIP3,ZIP4,ZIP5,ZIP8,ZIP7	OsZIP6,OsZIP1,OsZIP2, OsZIP11, ZIP11 ,OsIRT2, OsIRT1,OsZIP9, ZIP9,OsZIP10, ZIP10,OsIRT1,OsZIP3,OsZIP4,OsZIP5, OsZIP8, ZIP8, OsZIP9,OsZIP8, OsZIP1,OsZIP7
45984	30225642	Kim S.M.	Identification of novel recessive gene xa44(t) conferring resistance to bacterial blight races in rice by QTL linkage analysis using an SNP chip.	Theor. Appl. Genet.	131(12)	2733-2743	2018	XA44	xa44, xa44(t)
45985	30232619	Kumar D., Das P.K., Sarmah B.K.	Reference gene validation for normalization of RT-qPCR assay associated with germination and survival of rice under hypoxic condition.	J. Appl. Genet.	59(4)	419-430	2018	RFA2,_	rfa2*, REFA2, refa2, OsEF1alpna, EF1alpna,GAPDH, OsGAPDH, OsGapC2
45986	30212759	Song T., Zhang Q., Wang H., Han J., Xu Z., Yan S., Zhu Z.	OsJMJ703, a rice histone demethylase gene, plays key roles in plant development and responds to drought stress.	Plant Physiol. Biochem.	132	183-188	2018		
45987	30294335	Descalsota G.I.L., Swamy B.P.M., Zaw H., Inabangan-Asilo MA., Amparado A., Mauleon R., Chadha-Mohanty P., Arocena E.C., Raghavan C., Leung H., Hernandez J.E., Lalusin A.B., Mendioro M.S., Diaz M.G.Q., Reinke R.	Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.	Front Plant Sci	9	1347	2018		
45988	30341148	Farquharson K.L.	Loss of a Silencing Cascade Contributed to Indica Rice Domestication.	Plant Cell	30(11)	2643	2018	MIR397A,MIR397B	miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b
45989	30393190	Islam M.O., Kato H., Shima S., Tezuka D., Matsui H., Imai R.	Functional identification of a rice trehalase gene involved in salt stress tolerance.	Gene	685	42-49	2019	TRE1	OsTRE, OsTRE1
45990	30275327	Li Y., Qin B., Shen Y., Zhang F., Liu C., You H., Du G., Tang D., Cheng Z.	HEIP1 regulates crossover formation during meiosis in rice.	Proc. Natl. Acad. Sci. U.S.A.	115(42)	10810-10815	2018	HEIP1,_,_,_,RMC1	OsHEIP1,OsMSH5, MSH5,OsZIP4, ZIP4, SPO22,HEI10, HEI10A, HEI10B, OsHEI10,MER3, mer3, OsMER3, RCK, OsRCK, Os-MER3
45991	30327513		World's littlest light-sensing gyroscope fits on a grain of rice.	Nature	562(7727)	311	2018		
45992	30275307	Liu J., Wu X., Yao X., Yu R., Larkin P.J., Liu C.M.	Mutations in the DNA demethylase <i>OsROS1</i> result in a thickened aleurone and improved nutritional value in rice grains.	Proc. Natl. Acad. Sci. U.S.A.	115(44)	11327-11332	2018	RPBF,RISBZ1,TA2	OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF,OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1 
45993	30367983	Wang X., Chen J., Liu C., Luo J., Yan X., Aihua Ai, Cai Y., Xie H., Ding X., Peng X.	Over-expression of a protein disulfide isomerase gene from Methanothermobacter thermautotrophicus, enhances heat stress tolerance in rice.	Gene	684	124-130	2019		
45994	30341147	Swetha C., Basu D., Pachamuthu K., Tirumalai V., Nair A., Prasad M., Shivaprasad P.V.	Major Domestication-Related Phenotypes in <i>Indica</i> Rice Are Due to Loss of miRNA-Mediated Laccase Silencing.	Plant Cell	30(11)	2649-2662	2018	MIR397A,MIR397B,LAC3,LAC8,LAC14,LAC11	miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,OsChI1, ChI1, OsLAC3,OsLAC8, OsLAC7, LAC7,OsLAC14, OsLAC13, LAC13,Lac, OsLAC11, LAC10, OsLAC10
45995	30355769	Guo L., Cesari S., de Guillen K., Chalvon V., Mammri L., Ma M., Meusnier I., Bonnot F., Padilla A., Peng Y.L., Liu J., Kroj T.	Specific recognition of two MAX effectors by integrated HMA domains in plant immune receptors involves distinct binding surfaces.	Proc. Natl. Acad. Sci. U.S.A.	115(45)	11637-11642	2018	_,PIKP,PICO39	Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5,Pik-p, Pi-kp, Pikp, Pikp-1, Pikp-2,PiCO39(t), Pi-CO39, Pi-CO39(t), pi-CO39(t)
45996	30359793	Shah M.N.A., Arabia S., Islam T., Ghosh A.	Molecular evolution of SUN-domain containing proteins in diverse plant species and their expression profiling in response to developmental and perturbation stimuli.	Phytochemistry	157	28-42	2019	SUN3,SUN5,_,SUN1	OsSUN3, OsSUN3.1, OsSUN3.2, OsSUN3.3, OsSUN3.4,OsSUN5,OsSAD1, SAD1, OsSUN2, SUN2,OsSUN1
45997	30389557	Guan S., Xu Q., Ma D., Zhang W., Xu Z., Zhao M., Guo Z.	Transcriptomics profiling in response to cold stress in cultivated rice and weedy rice.	Gene	685	96-105	2019	OXS3,_,_,ILI5,_,_,LEA9,NAC1,_,_,WRKY90,_,MPK7,_,_,MKK5,_,CIGR1,_,_,_,TCD11,WRKY5,ERF77,WRKY14,_,_	OsOXS3,,,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,,,OsLEA9, OsLEA5, LEA5,OsNAC1, ONAC027, ONAC27, NAC27, OMTN1, OsNAC1/ONAC027,OsBCH2, BCH2, OsHYD1, HYD1,,OsWRKY90,,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsMKK5, BUD1, OsBUD1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsCIGR1, OsGRAS-34, OsGRAS34, GRAS-34, GRAS34,SOD, OsSOD-Cu/Zn, SOD-Cu/Zn,OsRAI1, RAI1, OsbHLH003, bHLH003, bHLH3,OsbHLH158. bHLH158,RPS6, OsRPS6, OsTCD11,OsWRKY5 ,OsAP2-39, OsERF#077, OsERF077, OsERF77, AP2/EREBP#149, AP2/EREBP149,OsWRKY14,,
45998	30373760	Yang M., Lu K., Zhao F.J., Xie W., Ramakrishna P., Wang G., Du Q., Liang L., Sun C., Zhao H., Zhang Z., Liu Z., Tian J., Huang X.Y., Wang W., Dong H., Hu J., Ming L., Xing Y., Wang G., Xiao J., Salt D.E., Lian X.	Genome-Wide Association Studies Reveal the Genetic Basis of Ionomic Variation in Rice.	Plant Cell	30(11)	2720-2740	2018	GHD7,SULTR5;2,HKT8	Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7,OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1
45999	30388677	Hsu Y.T., Lee T.M.	Abscisic acid-dependent nitric oxide pathway and abscisic acid-independent nitric oxide routes differently modulate NaCl stress induction of the gene expression of methionine sulfoxide reductase A and B in rice roots.	J. Plant Physiol.	231	374-382	2018		
46000	30332988	Sun Y., Luo W., Jain A., Liu L., Ai H., Liu X., Feng B., Zhang L., Zhang Z., Guohua X., Sun S.	OsPHR3 affects the traits governing nitrogen homeostasis in rice.	BMC Plant Biol.	18(1)	241	2018	PHR3,_,AMT1;2,NRT1,AMT1;1,NRT2.4,AMT1;3	OsPHR3, Os-PHR3, OsPHL1, PHL1 ,OsNIA1, OsNia1, NIA1, Nia1, OsNR, NR,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,OsNRT1, OsNRT1;1, OsNRT1.1, OsNRT1.1a, OsNRT1.1b, NRT1.1, NRT1.1a, NRT1.1b, OsNPF8.9, NPF8.9 ,OsAMT1;1, OsAMT1:1, OsAMT1, AMT1-1, AMT1, OsAMT1p, OsAMT1-1, Osamt1-1, "OsAMT1,1", OsAMT1.1, AMT1.1, FCO12,OsNRT2.4,OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2
46001	30367631	Liu Q., Li X., Yan S., Yu T., Yang J., Dong J., Zhang S., Zhao J., Yang T., Mao X., Zhu X., Liu B.	OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice.	BMC Plant Biol.	18(1)	257	2018	CHT4,PR4C,_,_,PR1A,_,_,PR4,_,PR10A,CHT8,CHT5,PAL1,NH1,WRKY74,WRKY67,WRKY7,WRKY60	Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,OsPR4c,prx65, PRX65, OsPRX65,OsPOD, prx11, Osprx11,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,prx71, Osprx71,PAD4, OsPAD4,OsPR4, OsPR4a, PR4a, OsPR-4,ICS1, OsICS1, OsICS, ICS,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,Cht8, OsChia2a, Cht2, Rcht2, Chia2a, CHIT14, OsCHIT14,Cht5, OsChia4a, OsChitIVa, Chia4a, ChitIVa, CHIT3, OsCHIT3,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsWRKY74,OsWRKY67,OsWRKY7,OsWRKY60
46002	30099559	Chen X., Ouyang Y., Fan Y., Qiu B., Zhang G., Zeng F.	The pathway of transmembrane cadmium influx via calcium-permeable channels and its spatial characteristics along rice root.	J. Exp. Bot.	69(21)	5279-5291	2018	_,ZIP8,NRAMP1,ANN4,_,NRAMP5,IRT1	CAX2, OsCAX2, OsCAX4, CAX4, OsSTA47, OsNCX3, NCX3,OsZIP8, OsZIP1,OsNramp1, OsNRAMP1, OsNramp6,OsANN4,OsGLR3.4, GLR3.4,OsNRAMP5, OsNramp5,OsIRT1
46003	30124964	Ko M.R., Song M.H., Kim J.K., Baek S.A., You M.K., Lim S.H., Ha S.H.	RNAi-mediated suppression of three carotenoid-cleavage dioxygenase genes, OsCCD1, 4a, and 4b, increases carotenoid content in rice.	J. Exp. Bot.	69(21)	5105-5116	2018	NCED2,_,NCED1	OsNCED2, OsNced2, OsCCD4b, CCD4b,OsCCD1, CCD1,OsNCED1, OsCCD4a, CCD4a
46004	30373162	Wang Y., Zhao H., Qin H., Li Z., Liu H., Wang J., Zhang H., Quan R., Huang R., Zhang Z.	The Synthesis of Ascorbic Acid in Rice Roots Plays an Important Role in the salt tolerance of Rice by Scavenging ROS.	Int J Mol Sci	19(11)		2018	_	OsMPG3, MPG3, OsVTC1-3, VTC1-3
46005	30053063	Dai Z., Wang J., Yang X., Lu H., Miao X., Shi Z.	Modulation of plant architecture by the miR156f-OsSPL7-OsGH3.8 pathway in rice.	J. Exp. Bot.	69(21)	5117-5130	2018	CD,GLW7 ,GH3-8,SPL7,SPL2,MIR156F	,OsSPL13, SPL13,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsSPL7,OsSPL2,miR156f, osmiR156f, OsmiR156f, osa-miR156f, osa-MIR156fosa-miR156f-3p osa-miR156f-5p
46006	30425978	Yoeun S., Cho K., Han O.	Structural Evidence for the Substrate Channeling of Rice Allene Oxide Cyclase in Biologically Analogous Nazarov Reaction.	Front Chem	6	500	2018	AOC,AOS2	OsAOC, AOC1, OsAOC1, HB, CPM2,OsAOS2, CYP74A2, OsAOS, OsAOS1
46007	30175516	Deng X., Yuan S., Cao H., Lam S.M., Shui G., Hong Y., Wang X.	Phosphatidylinositol-hydrolyzing phospholipase C4 modulates rice response to salt and drought.	Plant Cell Environ.	42(2)	536-548	2019	PLC4	OsPLC4
46008	30373525	Lu Y., Feng Z., Liu X., Bian L., Xie H., Zhang C., Mysore K.S., Liang J.	MiR393 and miR390 synergistically regulate lateral root growth in rice under different conditions.	BMC Plant Biol.	18(1)	261	2018	MIR393,TAS3B1,_,MIR390,_,MIR393B	OsmiR393, osa-MIR393, osa-MIR393a, OsmiR393a, miR393a ,TAS3b1, OsTAS3b1, OsTAS3a, TAS3a,OsTIR1, TIR1, OsFbox248, Os_F0717,OsmiR390, miR390, osa-MIR390osa-miR390, osa-miR390-3p, osa-miR390-5p,OsARF15, ARF15, ETT1, OsETT1, ARF3b, OsARF3-1, ARF3-1, OsARF3, ARF3,OsmiR393b, miR393b, osa-MIR393bosa-miR393b osa-miR393b-3p osa-miR393b-5p
46009	30307043	Mehra P., Pandey B.K., Verma L., Giri J.	A novel glycerophosphodiester phosphodiesterase improves phosphate deficiency tolerance in rice.	Plant Cell Environ.	42(4)	1167-1179	2019	GDPD2,PHR2	OsGDPD2,OsPHR2, Os-PHR2
46010	30332817	Park H.L., Kim T.L., Bhoo S.H., Lee T.H., Lee S.W., Cho M.H.	Biochemical Characterization of the Rice Cinnamyl Alcohol Dehydrogenase Gene Family.	Molecules	23(10)		2018	CAD8B,FC1,CAD6,CAD8D,CAD9,CAD3,CAD8A,CAD1,GH2,CAD5,CAD4,CAD8C	OsCAD8B,OsCAD7, fc1, CAD7,OsCAD6,OsCAD8D,OsCAD9,OsCAD3,OsCAD8A,OsCAD1,gh2, CAD2, CAD, OsCAD2, GH2 ,OsCAD5,OsCAD4,OsCAD8C, CAD8c
46011	30181146	Prakash Sanyal R., Samant A., Prashar V., Sharan Misra H., Saini A.	Biochemical and functional characterization of OsCSD3, a novel CuZn superoxide dismutase from rice.	Biochem. J.	475(19)	3105-3121	2018		
46012	30356087	Ramanathan V., Rahman H., Subramanian S., Nallathambi J., Kaliyaperumal A., Manickam S., Ranganathan C., Muthurajan R.	OsARD4 encoding an acireductone dioxygenase improves root architecture in rice by promoting development of secondary roots.	Sci Rep	8(1)	15713	2018	_,ARD4,PI55-1,JIOSPR10	OsRab6A1, Rab6A1,OsARD4,pi55-1, pi55(t), OsIRL4,JIOsPR10, OsPR10, PR10 
46013	30405666	Xu P., Ali A., Han B., Wu X.	Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.	Front Plant Sci	9	1528	2018	GA2OX6,EXPA8,RL14,REL2,DCL1,_,PIN1B,RFS,REL1,SRL2,GO,EBS,NAL3,COW1,_,CEF1,SD37,_,JAR1,NAL1,ACL2,SLL2,LC2,HB4,FIB,ACL1,SHL4,NAL2,HDAC1,ARF7A,PLA1,D1,VYL,_,RL9,PLA2,ARF10,ROC5,SRL1,_,_,_,MIR319B,_,GID2,_,MIR319A,RLCK216,ADL1,YAB1	OsGA2ox6,OsEXPA8, OsEXP8, osaEXPa1.17,2-ODD24, Os2-ODD24, 2ODD24, Os2ODD24,,Dcl1, OsDCL1, osDCL1, Os-DCL1,PFL,PIN1A, OsPIN1A, OsPIN1a, REH1, OsPIN1, OsPIN1b, REH1/OsPIN1,rfs, cul7, OsRFS,OsREL1,NRL2, OsSRL2, OsNRL2,go, go1, pla3, PLA3, PLA3/GO, OsLBD3-7, LBD3-7,OsEBS,nal3(nal2), nal2, nal3, cul3, OsWOX3A, WOX3, OsWOX3, OsNS, OsNS1/OsNS2, OsPRS,OsCOW1, oscow1, OsYUC8, YUC8, NAL7, OsYUCCA8, YUCCA8, FMO, OsFMO(t), REIN7, YUC8/REIN7,OsGIF3, GIF3, OsGIF1, GIF1, MKB3,OsMYB103, OsMYB103L, CEF1/OsMYB103L, MYB103, MYB103L,OsCYP96B4, CYP96B4, CYP96B4/SD37, OsDSS1, DSS1,OsZHD1, ZHD1,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,nal1, cul1, GPS, SPIKE, SPIKE/LSCHL4/NAL1/GPS, SPIKE/NAL1, LSCHL4,OsACL2,OsSLL2,OsLC2, OsVIL2, VIL2, OsVIL3,OSHB4, OsHox32, HOX32, OsHB4, Oshox32, PHB3,fib, OsTAR2, TAR2,OsACL1, ACL2, OsACL2,shl4, sh4, OsAGO7, SHO2, AGO7, SHL4/SHO2,nal2, nal3, cul2, OsWOX3A, Os NS, NS, OsNS, OsWOX3, OsNS1/OsNS2, OsPRS,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsARF7a, OsARF19, ARF19, OsARF7,pla1, OsPLA1, plt1, CYP78A11,d1, GPA1, GA1, RGA1, dwf1, XA7, RGA, D1/RGA1, D89,OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL,OsI-BAK1, I-BAK1,rl9, SLL1/RL9, SLL1,pla2, pla2(pla2-1, pla2-2), plt2, LHD2,OsARF10, OsARF18, ARF18,Roc5(t), Roc5, GL2-5, OsROC5,OsSRL1, CLD1/SRL1, CLD1, OsCLD1,GL7, GW7, qGW7, qGL7, SLG7, GL7/GW7/SLG7, qPY7,OsGASR1, GASR1,CFL1,OsmiR319b, Osa-miR319b,OsOFP2, OsOFP03, OFP2,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsZHD2, ZHD2,OsmiR319a, Osa-miR319a, osa-MIR319aosa-miR319a osa-miR319a-3p osa-miR319a-3p.2-3p,OsRLCK216, OsRRK1, RRK1,adl1,OsYAB1, FIL1, osFIL1
46014	30183128	Zhao Y.F., Peng T., Sun H.Z., Teotia S., Wen H.L., Du Y.X., Zhang J., Li J.Z., Tang G.L., Xue H.W., Zhao Q.Z.	miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice.	Plant Biotechnol. J.	17(4)	712-723	2019	ARF14,MIR1432,LRA1,SSIIC,PIN9,BT1-1,_,_,_,ACOT 	OsARF14, OsETT4, ETT4,miR1432, osa-miR1432, osa-miR1432-5p, osa-MIR1432,OsPIN2, PIN2, OsLRA1,OsSSIIc, SSII-1, SSII1 ,OsPIN9,OsBT1-1, OsEnS-29, OsBT1, OsBt1, BT1, Bt1, OsBt1-1, shr3, OsBT1-2, BT1-2,OsTAA1, TAA1, OsTAA1;4, TAA1;4,OsABA4, ABA4,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsACOT 
46015	30303953	Xu N., Chu Y., Chen H., Li X., Wu Q., Jin L., Wang G., Huang J.	Rice transcription factor OsMADS25 modulates root growth and confers salinity tolerance via the ABA-mediated regulatory pathway and ROS scavenging.	PLoS Genet.	14(10)	e1007662	2018	YUCCA4,GSTF11,P5CS,ABI5,LEA3-1,BZIP46,BZIP23,TRAB1,MADS25,P5CR	OsYUCCA4, OsYUC4, YUC4,OsGSTF11, OsGST4,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsABI5, OsbZIP10, OsABF1, OREB1, OsABI5-1, OsABI5-2, OsOREB1, OREB1 ,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,ABL1, bZIP46, OsABL1, OsbZIP46, OsAREB8, OsABF2, OsABF3, OsbZIP46CA1, OsZIP46, ZIP46,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsbZIP66, OsABF5, Osbzip66, OsTRAB1, bZIP66, ABF5,OsMADS25,OsP5CR
46016	29982633	James M., Poret M., Masclaux-Daubresse C., Marmagne A., Coquet L., Jouenne T., Chan P., Trouverie J., Etienne P.	SAG12, a Major Cysteine Protease Involved in Nitrogen Allocation during Senescence for Seed Production in Arabidopsis thaliana.	Plant Cell Physiol.	59(10)	2052-2063	2018		
46017	29939322	Zhang C., Lu W., Yang Y., Shen Z., Ma J.F., Zheng L.	OsYSL16 is Required for Preferential Cu Distribution to Floral Organs in Rice.	Plant Cell Physiol.	59(10)	2039-2051	2018		
46018	29767552	Yuan P., Zhang C., Wang Z.Y., Zhu X.F., Xuan Y.H.	RAVL1 Activates Brassinosteroids and Ethylene Signaling to Modulate Response to Sheath Blight Disease in Rice.	Phytopathology	108(9)	1104-1113	2018		
46019	30105259	Oladosu Y., Rafii M.Y., Magaji U., Abdullah N., Miah G., Chukwu S.C., Hussin G., Ramli A., Kareem I.	Genotypic and Phenotypic Relationship among Yield Components in Rice under Tropical Conditions.	Biomed Res Int	2018	8936767	2018		
46020	30061119	Cheng X., Zhang S., Tao W., Zhang X., Liu J., Sun J., Zhang H., Pu L., Huang R., Chen T.	INDETERMINATE SPIKELET1 Recruits Histone Deacetylase and a Transcriptional Repression Complex to Regulate Rice salt tolerance.	Plant Physiol.	178(2)	824-837	2018	IDS1,ERF3,SOS1,_,HDAC1,LEA17,SAP18,ZFP179	OsIDS1, AP2/EREBP#033, AP2/EREBP33, AP2-33/IDS1, AP2-33, AP2-2 ,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsSOS1, OsNHA1,OsWD40-66, TPR3, TPR1, OsTRP1, OsTPR3, OsTPL2, TPL2,OsHDAC1, HDA702, OsHDA702, HDA1, OsHDA1, HDT702, OsHDT702,OsLEA17, OsLEA3-2, LEA3-2, LEA1,OsSAP18,OsZFP179
46021	30006850	Divya D., Madhavi K.R., Dass M.A., Maku R.V., Mallikarjuna G., Sundaram R.M., Laha G.S., Padmakumari A.P., Patel H.K., Prasad M.S., Sonti R.V., Bentur J.S.	Expression Profile of Defense Genes in Rice Lines Pyramided with Resistance Genes Against Bacterial Blight, Fungal Blast and Insect Gall Midge.	Rice (N Y)	11(1)	40	2018		
46022	29932274	Zhang G., Xu N., Chen H., Wang G., Huang J.	OsMADS25 regulates root system development via auxin signalling in rice.	Plant J.	95(6)	1004-1022	2018		
46023	30018605	Trovero M.F., Scavone P., Platero R., de Souza EM., Fabiano E., Rosconi F.	<i>Herbaspirillum seropedicae</i> Differentially Expressed Genes in Response to Iron Availability.	Front Microbiol	9	1430	2018		
46024	29983312	Cubry P., Tranchant-Dubreuil C., Thuillet A.C., Monat C., Ndjiondjop M.N., Labadie K., Cruaud C., Engelen S., Scarcelli N., Rhon? B., Burgarella C., Dupuy C., Larmande P., Wincker P., Fran?ois O., Sabot F., Vigouroux Y.	The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.	Curr. Biol.	28(14)	2274-2282.e6	2018		
46025	30065743	Xu Y., Liu F., Zhu S., Li X.	The Maize NBS-LRR gene <i>ZmNBS25</i> Enhances disease resistance in Rice and Arabidopsis.	Front Plant Sci	9	1033	2018		
46026	30061546	Li W., Qiang X.J., Han X.R., Jiang L.L., Zhang S.H., Han J., He R., Cheng X.G.	Ectopic Expression of a Thellungiella salsuginea Aquaporin Gene, TsPIP1;1, Increased the salt tolerance of Rice.	Int J Mol Sci	19(8)		2018		
46027	29995230	Qiu Z., Chen D., He L., Zhang S., Yang Z., Zhang Y., Wang Z., Ren D., Qian Q., Guo L., Zhu L.	The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.	Rice (N Y)	11(1)	39	2018	_,_,_,RPOB,_,RPOC1,YGL10,PSAA,PSBA,WGL2,_,FGL,RPOC2,RPS18,RPL21,RBCL	OsChlH, ChlH, CHLH, OsCHLH,RPS20, OsRPS20, rps20,RPS16, OsRPS16, rps16,rpoB, RpoB, Rpobeta,OsDVR, DVR,rpoC1, RPO beta', RPObeta',CAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL,PsaA, psaA, PsAA1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,rps9, OsRPS9, OsWGL2,RPS10, OsRPS10, rps10,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,rpoC2, RPO beta", RPObeta",rps18,OsRPL21, Rpl21, OsRpl21,rbcL, rbcA, OsrbcL
46028	30014258	Ngangkham U., Nath M., Dokku P., Amitha Mithra SV., Ramamurthy S., Singh N.K., Sharma R.P., Mohapatra T.	An EMS-induced new sequence variant, TEMS5032, in the coding region of SRS3 gene leads to shorter grain length in rice (Oryza sativa L.).	J. Appl. Genet.	59(4)	377-389	2018		
46029	29658844	Chen X., Jia Y., Jia M.H., Pinson S.R.M., Wang X., Wu B.M.	Functional Interactions Between Major Rice Blast Resistance Genes, Pi-ta and Pi-b, and Minor Blast Resistance Quantitative Trait Loci.	Phytopathology	108(9)	1095-1103	2018		
46030	30021179	Fu L., Shen Q., Kuang L., Yu J., Wu D., Zhang G.	Metabolite profiling and gene expression of Na/K transporter analyses reveal mechanisms of the difference in salt tolerance between barley and rice.	Plant Physiol. Biochem.	130	248-257	2018		
46031	30051480	Li X., Yang W., Liu S., Li X.Q., Jia J., Zhao P., Cheng L., Qi D., Chen S., Liu G.	LcFIN2, a novel chloroplast protein gene from sheepgrass, enhances tolerance to low temperature in Arabidopsis and rice.	Physiol Plant			2018		
46032	30005603	Shin S.Y., Jeong J.S., Lim J.Y., Kim T., Park J.H., Kim J.K., Shin C.	Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies.	BMC Genomics	19(1)	532	2018		
46033	30066266	Majumder B., Das S., Mukhopadhyay S., Biswas A.K.	Identification of arsenic-tolerant and arsenic-sensitive rice (Oryza sativa L.) cultivars on the basis of arsenic accumulation assisted stress perception, morpho-biochemical responses, and alteration in genomic template stability.	Protoplasma	256(1)	193-211	2019		
46034	29967431	Petchthai U., Yee C.S.L., Wong S.M.	Resistance to CymMV and ORSV in artificial microRNA transgenic Nicotiana benthamiana plants.	Sci Rep	8(1)	9958	2018		
46035	29990722	Kelly B.C., Myo A.N., Pi N., Bayen S., Leakhena P.C., Chou M., Tan B.H.	Human exposure to trace elements in central Cambodia: Influence of seasonal hydrology and food-chain bioaccumulation behaviour.	Ecotoxicol. Environ. Saf.	162	112-120	2018		
46036	30014294	Sabouri A., Afshari R., Raiesi T., Babaei Raouf H., Nasiri E., Esfahani M., Kafi Ghasemi A., Kumar A.	Superior adaptation of aerobic rice under drought stress in Iran and validation test of linked SSR markers to major QTLs by MLM analysis across two?years.	Mol. Biol. Rep.	45(5)	1037-1053	2018		
46037	30066217	Basak P., Sangma S., Mukherjee A., Agarwal T., Sengupta S., Ray S., Majumder A.L.	Functional characterization of two myo-inositol-1-phosphate synthase (MIPS) gene promoters from the halophytic wild rice (Porteresia coarctata).	Planta	248(5)	1121-1141	2018		
46038	30028850	Shao J., Haider I., Xiong L., Zhu X., Hussain R.M.F., ?vern?s E., Meijer A.H., Zhang G., Wang M., Bouwmeester H.J., Ouwerkerk P.B.F.	Functional analysis of the HD-Zip transcription factor genes Oshox12 and Oshox14 in rice.	PLoS ONE	13(7)	e0199248	2018		
46039	29660235	Gao Y., Zhang C., Han X., Wang Z.Y., Ma L., Yuan P., Wu J.N., Zhu X.F., Liu J.M., Li D.P., Hu Y.B., Xuan Y.H.	Inhibition of OsSWEET11 function in mesophyll cells improves resistance of rice to sheath blight disease.	Mol. Plant Pathol.	19(9)	2149-2161	2018		
46040	29982569	Dong W., Vannozzi A., Chen F., Hu Y., Chen Z., Zhang L.	MORC domain Definition and Evolutionary Analysis of the MORC gene Family in Green Plants.	Genome Biol Evol	10(7)	1730-1744	2018	MORC1,MORC6A,MORC7,MORC6C,MORC6B,MORC4	OsMORC1,OsMORC6a,OsMORC7,OsMORC6c,OsMORC6b,OsMORC4
46041	30128334	Meng Q., Gupta R., Min C.W., Kim S.T.	Label-free quantitative proteome data associated with MSP1 and flg22 induced signaling in rice leaves.	Data Brief	20	204-209	2018		
46042	29974251	Reinke R., Kim S.M., Kim B.K.	Developing japonica rice introgression lines with multiple resistance genes for brown planthopper, bacterial blight, rice blast, and rice stripe virus using molecular breeding.	Mol. Genet. Genomics	293(6)	1565-1575	2018	PIB,XA40,BPH18,XA3,PIK	Pi b(Pi s), Pis, Pib, Pi-s, Pi-hy,,Bph18(t),Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26,Pik, RMg8, Pi-k, Pik-2, Pik-1, Pik1, Pik2, Pik-H4
46043	29946804	Liu C., Mao B., Ou S., Wang W., Liu L., Wu Y., Chu C., Wang X.	Correction to: OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice.	Plant Mol. Biol.	97(4-5)	467-468	2018		
46044	30055793	Lee M.H., Ok Y.S., Hur J.	Dynamic variations in dissolved organic matter and the precursors of disinfection by-products leached from biochars: Leaching experiments simulating intermittent rain events.	Environ. Pollut.	242(Pt B)	1912-1920	2018		
46045	30035649	Colzani M., Regazzoni L., Criscuolo A., Baron G., Carini M., Vistoli G., Lee Y.M., Han S.I., Aldini G., Yeum K.J.	Isotopic labelling for the characterisation of HNE-sequestering agents in plant-based extracts and its application for the identification of anthocyanidins in black rice with giant embryo.	Free Radic. Res.	52(8)	896-906	2018		
46046	30072222	Zhao J.Y., Ye Z.H., Zhong H.	Rice root exudates affect microbial methylmercury production in paddy soils.	Environ. Pollut.	242(Pt B)	1921-1929	2018		
46047	29962168	Hu X.F., Tian Z.Q., Liang L., Chen J.D., Zhang Z.M., Zhu X.M., Wang S.K.	[Comparative Analysis of Different Soil Amendment Treatments on Rice Heavy Metal Accumulation and Yield Effect in Pb and Cd Contaminated Farmland].	Huan Jing Ke Xue	39(7)	3409-3417	2018		
46048	29985462	Khan E., Gupta M.	Arsenic-silicon priming of rice (Oryza sativa L.) seeds influence mineral nutrient uptake and biochemical responses through modulation of Lsi-1, Lsi-2, Lsi-6 and nutrient transporter genes.	Sci Rep	8(1)	10301	2018		
46049	30108604	Li G., Hu Q., Shi Y., Cui K., Nie L., Huang J., Peng S.	Low Nitrogen Application Enhances Starch-Metabolizing Enzyme Activity and Improves Accumulation and Translocation of Non-structural Carbohydrates in Rice Stems.	Front Plant Sci	9	1128	2018		
46050	30079077	Priyadarshi R., Arremsetty H.P.S., Singh A.K., Khandekar D., Ulaganathan K., Shenoy V., Sinha P., Singh V.K.	Marker-Assisted Improvement of the Elite Maintainer Line of Rice, IR 58025B for Wide Compatibility (<i>S5</i>          <i>n</i>         ) Gene.	Front Plant Sci	9	1051	2018		
46051	30031604	Sengupta S., Rajasekaran K., Baisakh N.	Natural and targeted isovariants of the rice actin depolymerizing factor 2 can alter its functional and regulatory binding properties.	Biochem. Biophys. Res. Commun.	503(3)	1516-1523	2018		
46052	30042770	Ponce K.S., Ye G., Zhao X.	QTL Identification for Cooking and Eating Quality in <i>indica</i> Rice Using Multi-Parent Advanced Generation Intercross (MAGIC) Population.	Front Plant Sci	9	868	2018		
46053	29987304	Cao C., Zhou Z.L., Cao L.D., Zheng L., Xu J., Li F.M., Huang Q.L.	Influence of the surface limiting elasticity modulus on the impact behavior of droplets of difenoconazole-loaded mesoporous silica nanoparticles with associated SDS.	Soft Matter	14(29)	6070-6075	2018		
46054	30087689	Xiong Q., Tang G., Zhong L., He H., Chen X.	Response to Nitrogen Deficiency and Compensation on Physiological Characteristics, Yield Formation, and Nitrogen Utilization of Rice.	Front Plant Sci	9	1075	2018		
46055	30002723	Wong H.L., Akamatsu A., Wang Q., Higuchi M., Matsuda T., Okuda J., Kosami K.I., Inada N., Kawasaki T., Kaneko-Kawano T., Nagawa S., Tan L., Kawano Y., Shimamoto K.	In vivo monitoring of plant small GTPase activation using a F?rster resonance energy transfer biosensor.	Plant Methods	14	56	2018		
46056	29988155	De la Concepcion JC., Franceschetti M., Maqbool A., Saitoh H., Terauchi R., Kamoun S., Banfield M.J.	Polymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen.	Nat Plants	4(8)	576-585	2018		
46057	30009574	Gao J., Chen H., Yang H., He Y., Tian Z., Li J.	A brassinosteroid responsive miRNA-target module regulates gibberellin biosynthesis and plant development.	New Phytol.	220(2)	488-501	2018		
46058	29966651	Wang Y., Wei Z., Xing S.	Stable plastid transformation of rice, a monocot cereal crop.	Biochem. Biophys. Res. Commun.	503(4)	2376-2379	2018		
46059	30363818	Yu H., Shahid M.Q., Li R., Li W., Liu W., Ghouri F., Liu X.	Genome-Wide Analysis of Genetic Variations and the Detection of Rich Variants of NBS-LRR Encoding Genes in Common Wild Rice Lines.	Plant Molecular Biology Reporter	36(4)	618-630	2018	PIA,XA1,PISH,PI56,PID3,PI36,PITA,_,PIZT,_,NLS1,BPH26,CC1,BPH14,RPM1 ,BPH18	Pi a, Pia, Pi-a, Pia-1, Pia-2,Xa1(Xe), Xe, Xa1, Xa-1,Pi sh, Pish, Pi-sh, Pish(t),Pi56, qBR9.1, Pi56(t),Pi-d3, Pid3, Pi25,Pi36(t), Pi36,Pita, Pita (sl, Pi4a, Pi-ta), Pita2, Pi4a, Pita, Pi-ta, Pita-2, Pi-ta2, Pi-4(t), Pi-4, Pi4, Pi-4a(t), OsTRXh6, TRXh6, OsTrx30,Os11gRGA5, RGA5, RGA5-A, RGA5-B, Pi5,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9,OsRP1L1, RP1L1, OsBBR1, BBR1, rNBS33,OsNLS1,Bph26(t),OsCc1, OsCc-1,Bph14 (Qbp1), Bph14, Qbp1, qBPH-3,OsRPM1,Bph18(t)
46060	30740564	Qi J., Malook S.U., Shen G., Gao L., Zhang C., Li J., Zhang J., Wang L., Wu J.	Current understanding of maize and rice defense against insect herbivores.	Plant Divers	40(4)	189-195	2018		
46061	30073007	Wang L., Xue C., Pan X., Chen F., Liu Y.	Application of Controlled-Release Urea Enhances grain yield and Nitrogen Use Efficiency in Irrigated Rice in the Yangtze River Basin, China.	Front Plant Sci	9	999	2018		
46062	30031320	Thongnok S., Siripornadulsil W., Siripornadulsil S.	Mitigation of arsenic toxicity and accumulation in hydroponically grown rice seedlings by co-inoculation with arsenite-oxidizing and cadmium-tolerant bacteria.	Ecotoxicol. Environ. Saf.	162	591-602	2018		
46063	29871980	Ramireddy E., Hosseini S.A., Eggert K., Gillandt S., Gnad H., von Wir?n N., Schm?lling T.	Root Engineering in Barley: Increasing Cytokinin Degradation Produces a Larger root system, Mineral Enrichment in the Shoot and Improved drought tolerance.	Plant Physiol.	177(3)	1078-1095	2018		
46064	30021883	Liu S., Xue C., Fang Y., Chen G., Peng X., Zhou Y., Chen C., Liu G., Gu M., Wang K., Zhang W., Wu Y., Gong Z.	Global Involvement of Lysine Crotonylation in Protein Modification and Transcription Regulation in Rice.	Mol. Cell Proteomics	17(10)	1922-1936	2018		
46065	29928789	Huang C., Xia T., Niu J., Yang Y., Lin S., Wang X., Yang G., Mao L., Xing B.	Transformation of 14 C-Labeled Graphene to 14 CO2 in the Shoots of a Rice Plant.	Angew. Chem. Int. Ed. Engl.	57(31)	9759-9763	2018		
46066	30064038	Mithoe S.C., Menke F.L.	Regulation of pattern recognition receptor signalling by phosphorylation and ubiquitination.	Curr. Opin. Plant Biol.	45(Pt A)	162-170	2018		
46067	30034405	Zheng H., Cheng T., Li D., Yao X., Tian Y., Cao W., Zhu Y.	Combining Unmanned Aerial Vehicle (UAV)-Based Multispectral Imagery and Ground-Based Hyperspectral Data for Plant Nitrogen Concentration Estimation in Rice.	Front Plant Sci	9	936	2018		
46068	30018302	Huang M., Zhao C., Zou Y., Uphoff N.	Yield effect of applying earthworm castings produced during the oilseed rape-growing season in rice-oilseed rape cropping fields to rice.	Sci Rep	8(1)	10759	2018		
46069	30032316	Hechanova S.L., Prusty M.R., Kim S.R., Ballesfin L., Ramos J., Prahalada G.D., Jena K.K.	Monosomic alien addition lines (MAALs) of Oryza rhizomatis in Oryza sativa: production, cytology, alien trait introgression, molecular analysis and breeding application.	Theor. Appl. Genet.	131(10)	2197-2211	2018		
46070	30038290	Wang X., Zheng H., Tang Q.	Early harvesting improves seed vigour of hybrid rice seeds.	Sci Rep	8(1)	11092	2018		
46071	30066052	Grondin A., Dixit S., Torres R., Venkateshwarlu C., Rogers E., Mitchell-Olds T., Benfey P.N., Kumar A., Henry A.	Physiological mechanisms contributing to the QTL qDTY3.2 effects on improved performance of rice Moroberekan x Swarna BC2F3:4 lines under drought.	Rice (N Y)	11(1)	43	2018		
46072	29996483	Xue M., Long Y., Zhao Z., Huang G., Huang K., Zhang T., Jiang Y., Yuan Q., Pei X.	Isolation and Characterization of a Green-Tissue Promoter from Common Wild Rice (<i>Oryza rufipogon</i> Griff.).	Int J Mol Sci	19(7)		2018	GSE,_	OsGSE,OrGSE
46073	30026750	Zhou K., Cheng T., Zhu Y., Cao W., Ustin S.L., Zheng H., Yao X., Tian Y.	Assessing the Impact of Spatial Resolution on the Estimation of Leaf Nitrogen Concentration Over the Full Season of Paddy Rice Using Near-Surface Imaging Spectroscopy Data.	Front Plant Sci	9	964	2018		
46074	30028886	Mathew B., L?on J., Sillanp?? MJ.	Impact of residual covariance structures on genomic prediction ability in multi-environment trials.	PLoS ONE	13(7)	e0201181	2018		
46075	30042775	Minhas A.P., Tuli R., Puri S.	Pathway Editing Targets for Thiamine Biofortification in Rice Grains.	Front Plant Sci	9	975	2018		
46076	29973285	Tang X., Liu G., Zhou J., Ren Q., You Q., Tian L., Xin X., Zhong Z., Liu B., Zheng X., Zhang D., Malzahn A., Gong Z., Qi Y., Zhang T., Zhang Y.	A large-scale whole-genome sequencing analysis reveals highly specific genome editing by both Cas9 and Cpf1 (Cas12a) nucleases in rice.	Genome Biol.	19(1)	84	2018		
46077	30032279	Wen Y.J., Zhang Y.W., Zhang J., Feng J.Y., Dunwell J.M., Zhang Y.M.	An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2.	Brief. Bioinformatics			2018		
46078	29762900	Wang M., Mao Y., Lu Y., Wang Z., Tao X., Zhu J.K.	Multiplex gene editing in rice with simplified CRISPR-Cpf1 and CRISPR-Cas9 systems.	J Integr Plant Biol	60(8)	626-631	2018		
46079	29986421	Zhang Z., Liu M., Liu X., Zhou G.	A New Vegetation Index Based on Multitemporal Sentinel-2 Images for Discriminating Heavy Metal Stress Levels in Rice.	Sensors (Basel)	18(7)		2018		
46080	30055345	Hu L.Y., Li D., Sun K., Cao W., Fu W.Q., Zhang W., Dai C.C.	Mutualistic fungus Phomopsis liquidambari increases root aerenchyma formation through auxin-mediated ethylene accumulation in rice (Oryza sativa L.).	Plant Physiol. Biochem.	130	367-376	2018		
46081	29718322	Proost S., Mutwil M.	CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses.	Nucleic Acids Res.	46(W1)	W133-W140	2018		
46082	30158652	Sun H., Tao J., Bi Y., Hou M., Lou J., Chen X., Zhang X., Luo L., Xie X., Yoneyama K., Zhao Q., Xu G., Zhang Y.	OsPIN1b is Involved in Rice seminal root Elongation by Regulating Root Apical Meristem Activity in Response to Low Nitrogen and Phosphate.	Sci Rep	8(1)	13014	2018		
46083	30158365	Naher K., Miwa H., Okazaki S., Yasuda M.	Effects of Different Sources of Nitrogen on Endophytic Colonization of Rice Plants by Azospirillum sp. B510.	Microbes and Environments	33(3)	301-308	2018		
46084	30348312	Yan J., Liu Y., Wang K., Li D., Hu Q., Zhang W.	Overexpression of OsPIL1 enhanced biomass yield and saccharification efficiency in switchgrass.	Plant Sci.	276	143-151	2018		
46085	30150624	Baicharoen A., Vijayan R., Pongprayoon P.	Structural insights into betaine aldehyde dehydrogenase (BADH2) from Oryza sativa explored by modeling and simulations.	Sci Rep	8(1)	12892	2018		
46086	30080873	Li X., Yu H., Jiao Y., Shahid M.Q., Wu J., Liu X.	Genome-wide analysis of DNA polymorphisms, the methylome and transcriptome revealed that multiple factors are associated with low pollen fertility in autotetraploid rice.	PLoS ONE	13(8)	e0201854	2018		
46087	30148033	Phule A.S., Barbadikar K.M., Madhav M.S., Senguttuvel P., Babu MBBP., Ananda Kumar P.	Genes encoding membrane proteins showed stable expression in rice under aerobic condition: novel set of reference genes for expression studies.	3 Biotech	8(9)	383	2018		
46088	30369817	Ohmori S., Koike S., Hayashi T., Yamaguchi T., Kuroki M., Yoshida H.	The cleistogamy of the <i>superwoman1-cleistogamy1</i> mutation is sensitive to low temperatures during the lodicule-forming stage.	Breed. Sci.	68(4)	432-441	2018		
46089	30140774	Sirisomboon P., Posom J.	A new creep model for studying the non-linear viscoelastic behavior of cooked white, brown and germinated brown Thai jasmine rice by large deformation testing.	Heliyon	4(8)	e00745	2018		
46090	29566130	Junaid A., Kumar H., Rao A.R., Patil A.N., Singh N.K., Gaikwad K.	Unravelling the epigenomic interactions between parental inbreds resulting in an altered hybrid methylome in pigeonpea.	DNA Res.	25(4)	361-373	2018		
46091	30112588	Tian D., Yang L., Chen Z., Chen Z., Wang F., Zhou Y., Luo Y., Yang L., Chen S.	Proteomic analysis of the defense response to Magnaporthe oryzae in rice harboring the blast resistance gene Piz-t.	Rice (N Y)	11(1)	47	2018		
46092	30171963	Zeng F., Li T., Gao Q., Liu B., Yu S.	Physicochemical properties and in vitro digestibility of high hydrostatic pressure treated Waxy rice starch.	Int. J. Biol. Macromol.	120(Pt A)	1030-1038	2018		
46093	30182596	Cao N., Xiong Q.Q., Chen X.R., He H.H., Zhu C.L., Fu J.R., Cai S., Xu T.	[Effects of different nitrogen application rates on low temperature resistance of late rice at heading and flowering stage.]	Ying Yong Sheng Tai Xue Bao	29(8)	2566-2574	2018		
46094	30149354	Chao X., Qian X., Han-Hua Z., Shuai W., Qi-Hong Z., Dao-You H., Yang-Zhu Z.	Effect of biochar from peanut shell on speciation and availability of lead and zinc in an acidic paddy soil.	Ecotoxicol. Environ. Saf.	164	554-561	2018		
46095	30113309	Diao M., Ren S., Wang Q., Qian L., Shen J., Liu Y., Huang S.	<i>Arabidopsis</i> Formin 2 regulates cell-to-cell trafficking by capping and stabilizing actin filaments at plasmodesmata.	Elife	7		2018		
46096	30181765	Li D., Wang X., Zheng H., Zhou K., Yao X., Tian Y., Zhu Y., Cao W., Cheng T.	Estimation of area- and mass-based leaf nitrogen contents of wheat and rice crops from water-removed spectra using continuous wavelet analysis.	Plant Methods	14	76	2018		
46097	30136055	Ma K., Liu Y.G.	DELLA-GRF4-mediated coordination of growth and nitrogen metabolism paves the way for a new Green Revolution.	Sci China Life Sci	61(9)	1130-1131	2018		
46098	30096145	Zhao Y., Zhang H., Xu J., Jiang C., Yin Z., Xiong H., Xie J., Wang X., Zhu X., Li Y., Zhao W., Rashid M.A.R., Li J., Wang W., Fu B., Ye G., Guo Y., Hu Z., Li Z., Li Z.	Loci and natural alleles underlying robust roots and adaptive domestication of upland ecotype rice in aerobic conditions.	PLoS Genet.	14(8)	e1007521	2018		
46099	30097007	Kaur G., Pati P.K.	In silico insights on diverse interacting partners and phosphorylation sites of respiratory burst oxidase homolog (Rbohs) gene families from Arabidopsis and rice.	BMC Plant Biol.	18(1)	161	2018		
46100	30369822	Ballesfin M.L.E., Vinarao R.B., Sapin J., Kim S.R., Jena K.K.	Development of an intergeneric hybrid between <i>Oryza sativa</i> L. and <i>Leersia perrieri</i> (A. Camus) Launert.	Breed. Sci.	68(4)	474-480	2018		
46101	30149357	Singha L.P., Sinha N., Pandey P.	Rhizoremediation prospects of Polyaromatic hydrocarbon degrading rhizobacteria, that facilitate glutathione and glutathione-S-transferase mediated stress response, and enhance growth of rice plants in pyrene contaminated soil.	Ecotoxicol. Environ. Saf.	164	579-588	2018		
46102	29893903	Pan G., Liu Y., Ji L., Zhang X., He J., Huang J., Qiu Z., Liu D., Sun Z., Xu T., Liu L., Wang C., Jiang L., Cheng X., Wan J.	Brassinosteroids mediate susceptibility to brown planthopper by integrating with the salicylic acid and jasmonic acid pathways in rice.	J. Exp. Bot.	69(18)	4433-4442	2018		
46103	30114676	Tang Y., Li X., Lu W., Wei X., Zhang Q., Lv C., Song N.	Enhanced photorespiration in transgenic rice over-expressing maize C4 phosphoenolpyruvate carboxylase gene contributes to alleviating low nitrogen stress.	Plant Physiol. Biochem.	130	577-588	2018		
46104	30157762	Butt H., Jamil M., Wang J.Y., Al-Babili S., Mahfouz M.	Engineering plant architecture via CRISPR/Cas9-mediated alteration of strigolactone biosynthesis.	BMC Plant Biol.	18(1)	174	2018		
46105	30116291	Xu L.X., Lin Y.X., Wang L.H., Zhou Y.C.	Dehiscence method: a seed-saving, quick and simple viability assessment in rice.	Plant Methods	14	68	2018		
46106	30121512	Chen J., Dou R., Yang Z., You T., Gao X., Wang L.	Phytotoxicity and bioaccumulation of zinc oxide nanoparticles in rice (Oryza sativa L.).	Plant Physiol. Biochem.	130	604-612	2018		
46107	30073424	Dong Q., Zhang Z.H., Wang L.L., Zhu Y.J., Fan Y.Y., Mou T.M., Ma L.Y., Zhuang J.Y.	Dissection and fine-mapping of two QTL for grain size linked in a 460-kb region on chromosome 1 of rice.	Rice (N Y)	11(1)	44	2018		
46108	30369819	Fujino K., Hirayama Y., Obara M., Ikegaya T.	Colocalization of QTLs for hull-cracked rice and grain size.in elite rice varieties in Japan.	Breed. Sci.	68(4)	449-454	2018		
46109	30189416	Cao X., Zhong C., Zhu C., Zhu L., Zhang J., Wu L., Jin Q.	Ammonium uptake and metabolism alleviate PEG-induced water stress in rice seedlings.	Plant Physiol. Biochem.	132	128-137	2018		
46110	30096253	Li Y., Tang D., Li L., Zhao X., Lin J., Liu X.	Plant Stature Related receptor-like Kinanse2 (PSRK2) acts as a factor that determines stem elongation toward gibberellins response in rice.	Biosci. Biotechnol. Biochem.	82(11)	1931-1941	2018		
46111	30088087	Dutta S.S., Tyagi W., Pale G., Pohlong J., Aochen C., Pandey A., Pattanayak A., Rai M.	Marker-trait association for low-light intensity tolerance in rice genotypes from Eastern India.	Mol. Genet. Genomics	293(6)	1493-1506	2018		
46112	30070085	Li S., Liu S.M., Fu H.W., Huang J.Z., Shu Q.Y.	High-resolution melting-based TILLING of gamma ray-induced mutations in rice.	J Zhejiang Univ Sci B	19(8)	620-629			
46113	30151833	Cui X., Zhang Z., Wang Y., Wu J., Han X., Gu X., Lu T.	TWI1 regulates cell-to-cell movement of OSH15 to control leaf cell fate.	New Phytol.	221(1)	326-340	2019	OSH15,TWI1	OSH15, OsH15, OSKN3, Oskn3, HOS3, D6, d6, OSH15/Oskn3, HB253, H15, OsKNOX3, KNOX3,OsSRO1a, SRO1a, OsTWI1
46114	30425422	Chattopadhyay K., Nayak A.K., Marndi B.C., Poonam A., Chakraborty K., Sarkar R.K.	Novel screening protocol for precise phenotyping of salt-tolerance at reproductive stage in rice.	Physiol Mol Biol Plants	24(6)	1047-1058	2018		
46115	30131566	Fujishiro Y., Agata A., Ota S., Ishihara R., Takeda Y., Kunishima T., Ikeda M., Kyozuka J., Hobo T., Kitano H.	Comprehensive panicle phenotyping reveals that qSrn7/FZP influences higher-order branching.	Sci Rep	8(1)	12511	2018		
46116	30140180	Meng Q., Gupta R., Kwon S.J., Wang Y., Agrawal G.K., Rakwal R., Park S.R., Kim S.T.	Transcriptomic Analysis of <i>Oryza sativa</i> Leaves Reveals Key Changes in Response to <i>Magnaporthe oryzae</i> MSP1.	Plant Pathol. J.	34(4)	257-268	2018		
46117	29981171	Wang F., Longkumer T., Catausan S.C., Calumpang C.L.F., Tarun J.A., Cattin-Ortola J., Ishizaki T., Pariasca Tanaka J., Rose T., Wissuwa M., Kretzschmar T.	Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.	Plant Cell Environ.	41(12)	2731-2743	2018		
46118	30120263	Gao L., Fang Z., Zhou J., Li L., Lu L., Li L., Li T., Chen L., Zhang W., Zhai W., Peng H.	Transcriptional insights into the pyramided resistance to rice bacterial blight.	Sci Rep	8(1)	12358	2018		
46119	30148967	Zhang S., Fan C., Wang Y., Xia Y., Xiao W., Cui X.	Salt-tolerant and plant-growth-promoting bacteria isolated from high-yield paddy soil.	Can. J. Microbiol.	64(12)	968-978	2018		
46120	30246111	Shimatani Z., Fujikura U., Ishii H., Terada R., Nishida K., Kondo A.	Herbicide tolerance-assisted multiplex targeted nucleotide substitution in rice.	Data Brief	20	1325-1331	2018		
46121	30154819	Jose M., Raj R.D., Vinitha M.R., Madhu R., Varghese G., Bocianowski J., Yadav R., Patra B.C., Singh O.N., Rana J.C., Kurmari S.L., Thomas G.	The Prehistoric Indian Ayurvedic Rice <i>Shashtika</i> Is an Extant Early Domesticate With a Distinct Selection History.	Front Plant Sci	9	1203	2018		
46122	30097762	Lekklar C., Chadchawan S., Boon-Long P., Pfeiffer W., Chaidee A.	Salt stress in rice: multivariate analysis separates four components of beneficial silicon action.	Protoplasma	256(2)	331-347	2019		
46123	30083951	Wu Q., Peng X., Yang M., Zhang W., Dazzo F.B., Uphoff N., Jing Y., Shen S.	Rhizobia promote the growth of rice shoots by targeting cell signaling, division and expansion.	Plant Mol. Biol.	97(6)	507-523	2018		
46124	30186295	D?az-Benito P., Banakar R., Rodr?guez-Men?ndez S., Capell T., Pereiro R., Christou P., Abad?a J., Fern?ndez B., ?lvarez-Fern?ndez A.	Iron and Zinc in the Embryo and Endosperm of Rice (<i>Oryza sativa</i> L.) Seeds in Contrasting 2'-Deoxymugineic Acid/Nicotianamine Scenarios.	Front Plant Sci	9	1190	2018		
46125	30182615	Liu Y.W., Xue L.H., Yang L.Z., Wang Y.M.	[Effects of sewage irrigation on growth of rice seedlings and soil environment with straw incorporation.]	Ying Yong Sheng Tai Xue Bao	29(8)	2739-2745	2018		
46126	30099612	Xiang J., Chen X., Hu W., Xiang Y., Yan M., Wang J.	Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice.	Plant Cell Rep.	37(11)	1585-1595	2018		
46127	30099611	Mahjoubi H., Tamari Y., Takeda S., Bouchabk?-Coussa O., Hanin M., Herzog E., Schmit A.C., Chabout? ME., Ebel C.	The wheat TdRL1 is the functional homolog of the rice RSS1 and promotes plant SALT stress tolerance.	Plant Cell Rep.	37(12)	1625-1637	2018		
46128	30103148	Li X., Chen R., Chu Y., Huang J., Jin L., Wang G., Huang J.	Overexpression of RCc3 improves root system architecture and enhances salt tolerance in rice.	Plant Physiol. Biochem.	130	566-576	2018		
46129	30084027	Liu X., Yang C.Y., Miao R., Zhou C.L., Cao P.H., Lan J., Zhu X.J., Mou C.L., Huang Y.S., Liu S.J., Tian Y.L., Nguyen T.L., Jiang L., Wan J.M.	ds1/OsEMF1 interacts with OsARF11 to control rice architecture by regulation of brassinosteroid signaling.	Rice (N Y)	11(1)	46	2018		
46130	30171961	Martins P.C., Gutkoski L.C., Martins V.G.	Impact of acid hydrolysis and esterification process in rice and potato starch properties.	Int. J. Biol. Macromol.	120(Pt A)	959-965	2018		
46131	30120236	Liu C., Ou S., Mao B., Tang J., Wang W., Wang H., Cao S., Schl?ppi MR., Zhao B., Xiao G., Wang X., Chu C.	Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates.	Nat Commun	9(1)	3302	2018		
46132	30072633	Zhang L., Zhao L., Lin L., Zhao L., Liu Q., Wei C.	A Novel Mutation of <i>OsPPDKB</i>, Encoding Pyruvate Orthophosphate Dikinase, Affects Metabolism and Structure of Starch in the Rice Endosperm.	Int J Mol Sci	19(8)		2018		
46133	30131812	Nguyen V.N.T., Lee S.B., Suh M.C., An G., Jung K.H.	OsABCG9 Is an Important ABC Transporter of Cuticular Wax Deposition in Rice.	Front Plant Sci	9	960	2018		
46134	30363138	Ito S., Yamagami D., Asami T.	Effects of gibberellin and strigolactone on rice tiller bud growth.	Journal of Pesticide Science	43(3)	220-223	2018		
46135	30150736	Wu H., Xiang J., Zhang Y., Zhang Y., Peng S., Chen H., Zhu D.	Effects of Post-Anthesis Nitrogen Uptake and Translocation on Photosynthetic Production and Rice Yield.	Sci Rep	8(1)	12891	2018		
46136	29727000	Takeuchi J., Jiang K., Hirabayashi K., Imamura Y., Wu Y., Xu Y., Miyakawa T., Nakamura H., Tanokura M., Asami T.	Rationally Designed Strigolactone Analogs as Antagonists of the D14 Receptor.	Plant Cell Physiol.	59(8)	1545-1554	2018		
46137	30144351	Qu L., Lin L.B., Xue H.W.	Rice miR394 suppresses leaf inclination through targeting an F-box gene, LEAF INCLINATION 4.	J Integr Plant Biol			2018	LC4,_,MIR394	OsFbox053, OsFbox53, Os_F0309, OsLC4,OSK1, SKP1, OsSKP1,OsmiR394, miR394, osa-MIR394
46138	30149355	Andrade F.R., da Silva GN., Guimar?es KC., Barreto H.B.F., de Souza KRD., Guilherme L.R.G., Faquin V., Reis A.R.D.	Selenium protects rice plants from water deficit stress.	Ecotoxicol. Environ. Saf.	164	562-570	2018		
46139	30139795	Chen J., Wang J., Chen W., Sun W., Peng M., Yuan Z., Shen S., Xie K., Jin C., Sun Y., Liu X., Fernie A.R., Yu S., Luo J.	Metabolome Analysis of Multi-Connected Biparental Chromosome Segment Substitution Line Populations.	Plant Physiol.	178(2)	612-625	2018		
46140	30105828	Vasanthi S., Dass J.F.P.	Comparative genome-wide analysis of codon usage of different bacterial species infecting Oryza sativa.	J. Cell. Biochem.	119(11)	9346-9356	2018		
46141	30081817	Galeng-Lawilao J., Kumar A., De Waele D.	QTL mapping for resistance to and tolerance for the rice root-knot nematode, Meloidogyne graminicola.	BMC Genet.	19(1)	53	2018		
46142	30214671	Masuda S., Sasaki K., Kazama Y., Kisara C., Takeda S., Hanzawa E., Minamisawa K., Sato T.	Mapping of quantitative trait loci related to primary rice root growth as a response to inoculation with <i>Azospirillum</i> sp. strain B510.	Commun Integr Biol	11(3)	1-6	2018		
46143	30011040	Liu X., Lan J., Huang Y., Cao P., Zhou C., Ren Y., He N., Liu S., Tian Y., Nguyen T., Jiang L., Wan J.	Corrigendum: WSL5, a pentatricopeptide repeat protein, is essential for chloroplast biogenesis in rice under cold stress.	J. Exp. Bot.	69(18)	4495	2018		
46144	30072644	Chung I.M., Kwon C., An Y., Ali M., Lee H., Lim J.D., Kim S., Yang Y., Kim S.H., Ahmad A.	Characterization of New Polyphenolic Glycosidic Constituents and Evaluation of Cytotoxicity on a Macrophage Cell Line and Allelopathic Activities of <i>Oryza sativa</i>.	Molecules	23(8)		2018		
46145	30363369	Isaji S., Yoshinaga N., Teraishi M., Ogawa D., Kato E., Okumoto Y., Habu Y., Mori N.	Biosynthesis and accumulation of GABA in rice plants treated with acetic acid.	Journal of Pesticide Science	43(3)	214-219	2018		
46146	30092285	Yan J., Yao R., Chen L., Li S., Gu M., Nan F., Xie D.	Dynamic Perception of Jasmonates by the F-Box Protein COI1.	Mol Plant	11(10)	1237-1247	2018		
46147	30197654	Borrelli V.M.G., Brambilla V., Rogowsky P., Marocco A., Lanubile A.	The Enhancement of Plant disease resistance Using CRISPR/Cas9 Technology.	Front Plant Sci	9	1245	2018		
46148	30233646	Gao N., Teng J., Ye S., Yuan X., Huang S., Zhang H., Zhang X., Li J., Zhang Z.	Genomic Prediction of Complex Phenotypes Using Genic Similarity Based Relatedness Matrix.	Front Genet	9	364	2018		
46149	29979827	Golicz A.A., Bhalla P.L., Singh M.B.	MCRiceRepGP: a framework for the identification of genes associated with sexual reproduction in rice.	Plant J.	96(1)	188-202	2018		
46150	30175028	Badrhadad A., Nazarian-Firouzabadi F., Ismaili A.	Fusion of a chitin-binding domain to an antibacterial peptide to enhance resistance to <i>Fusarium solani</i> in tobacco (<i>Nicotiana tabacum</i>).	3 Biotech	8(9)	391	2018		
46151	30369815	Mizobuchi R., Fukuoka S., Tsuiki C., Tsushima S., Sato H.	Evaluation of major Japanese rice cultivars for resistance to bacterial grain rot caused by <i>Burkholderia glumae</i> and identification of standard cultivars for resistance.	Breed. Sci.	68(4)	413-419	2018		
46152	30147703	Zhu A., Zhang Y., Zhang Z., Wang B., Xue P., Cao Y., Chen Y., Li Z., Liu Q., Cheng S., Cao L.	Genetic Dissection of <i>qPCG1</i> for a Quantitative Trait Locus for Percentage of Chalky Grain in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1173	2018		
46153	30044049	He K., Xiao H., Sun Y., Ding S., Situ G., Li F.	Transgenic microRNA-14 rice shows high resistance to rice stem borer.	Plant Biotechnol. J.	17(2)	461-471	2019		
46154	30196115	Huan Q., Zhang Y., Wu S., Qian W.	HeteroMeth: A Database of Cell-to-cell Heterogeneity in DNA Methylation.	Genomics, proteomics & bioinformatics	16(4)	234-243	2018		
46155	30097068	Cen W., Liu J., Lu S., Jia P., Yu K., Han Y., Li R., Luo J.	Comparative proteomic analysis of QTL CTS-12 derived from wild rice (Oryza rufipogon Griff.), in the regulation of cold acclimation and de-acclimation of rice (Oryza sativa L.) in response to severe chilling stress.	BMC Plant Biol.	18(1)	163	2018		
46156	30266409	Qi H., Jiang Z., Zhang K., Yang S., He F., Zhang Z.	PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System.	Genomics, proteomics & bioinformatics	16(4)	283-293	2018		
46157	30092808	Xi J., Patel M., Dong S., Que Q., Qu R.	Acetosyringone treatment duration affects large T-DNA molecule transfer to rice callus.	BMC Biotechnol.	18(1)	48	2018		
46158	30094490	Hyde L.S., Pellny T.K., Freeman J., Michaelson L.V., Simister R., McQueen-Mason SJ., Mitchell R.A.C.	Response of cell-wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus.	Planta	248(5)	1213-1229	2018		
46159	29522378	Li C., Liu S., Liu P., Wang Y., Xu C., Tao J., He C.	The YebN Leader RNA Acts as a Mn2+ Sensor Required for the Interaction of Xanthomonas oryzae and Rice.	Mol. Plant Microbe Interact.	31(9)	932-939	2018		
46160	30072810	Fartyal D., Agarwal A., James D., Borphukan B., Ram B., Sheri V., Agrawal P.K., Achary V.M.M., Reddy M.K.	Developing dual herbicide tolerant transgenic rice plants for sustainable weed management.	Sci Rep	8(1)	11598	2018		
46161	30253806	Lu Y., Xu Q., Liu Y., Yu Y., Cheng Z.Y., Zhao Y., Zhou D.X.	Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence.	Genome Biol.	19(1)	144	2018		
46162	30032251	Ren D., Hu J., Xu Q., Cui Y., Zhang Y., Zhou T., Rao Y., Xue D., Zeng D., Zhang G., Gao Z., Zhu L., Shen L., Chen G., Guo L., Qian Q.	FZP determines grain size and sterile lemma fate in rice.	J. Exp. Bot.	69(20)	4853-4866	2018		
46163	30235789	Waqas M., Feng S., Amjad H., Letuma P., Zhan W., Li Z., Fang C., Arafat Y., Khan M.U., Tayyab M., Lin W.	Protein Phosphatase (<i>PP2C9</i>) Induces Protein Expression Differentially to Mediate Nitrogen Utilization Efficiency in Rice under Nitrogen-Deficient Condition.	Int J Mol Sci	19(9)		2018		
46164	30425421	Mishra S.S., Behera P.K., Kumar V., Lenka S.K., Panda D.	Physiological characterization and allelic diversity of selected drought tolerant traditional rice (<i>Oryza sativa</i> L.) landraces of Koraput, India.	Physiol Mol Biol Plants	24(6)	1035-1046	2018		
46165	30185720	Imamura T., Obata C., Yoneyama K., Ichikawa M., Ikura A., Mutsuro-Aoki H., Ishikawa T., Kawai-Yamada M., Sasaki T., Kusano H., Shimada H.	DSH5, a dihydrosphingosine C4 hydroxylase gene family member, shows spatially restricted expression in rice and is lethal when expressed ectopically.	Genes Genet. Syst.	93(4)	135-142	2018		
46166	30253735	Reig-Valiente JL., Marqu?s L., Tal?n M., Domingo C.	Genome-wide association study of agronomic traits in rice cultivated in temperate regions.	BMC Genomics	19(1)	706	2018		
46167	30180793	Wang X., Zhang L., Ji H., Mo X., Li P., Wang J., Dong H.	Hpa1 is a type III translocator in Xanthomonas oryzae pv. oryzae.	BMC Microbiol.	18(1)	105	2018		
46168	30246370	Zhang W., Zhu K., Wang Z., Zhang H., Gu J., Liu L., Yang J., Zhang J.	Brassinosteroids function in spikelet differentiation and degeneration in rice.	J Integr Plant Biol			2018		
46169	30194417	Li X., Si W., Qin Q., Wu H., Jiang H.	Deciphering evolutionary dynamics of SWEET genes in diverse plant lineages.	Sci Rep	8(1)	13440	2018		
46170	30269017	Sebastian A., Prasad M.N.V.	Exogenous citrate and malate alleviate cadmium stress in Oryza sativa L.: Probing role of cadmium localization and iron nutrition.	Ecotoxicol. Environ. Saf.	166	215-222	2018		
46171	30217023	Chen L., Cao T., Zhang J., Lou Y.	Overexpression of <i>OsGID1</i> Enhances the Resistance of Rice to the Brown Planthopper <i>Nilaparvata lugens</i>.	Int J Mol Sci	19(9)		2018		
46172	30253267	Alamin M., Zeng D.D., Sultana M.H., Qin R., Jin X.L., Shi C.H.	Rice sdsfl1 plays a critical role in the regulation of plant structure through the control of different phytohormones and altered cell structure.	J. Plant Physiol.	231	110-123	2018		
46173	30185925	Zhu H., Li Y., Liang J., Luan X., Xu P., Wang S., Zhang G., Liu G.	Analysis of QTLs on heading date based on single segment substitution lines in rice (Oryza Sativa L.).	Sci Rep	8(1)	13232	2018		
46174	30205448	Inomata T., Baslam M., Masui T., Koshu T., Takamatsu T., Kaneko K., Pozueta-Romero J., Mitsui T.	Proteomics Analysis Reveals Non-Controlled Activation of Photosynthesis and Protein Synthesis in a Rice <i>NPP1</i> Mutant under High Temperature and Elevated CO? Conditions.	Int J Mol Sci	19(9)		2018		
46175	30274246	Brew-Appiah RAT., Sanguinet K.A.	Considerations of AOX Functionality Revealed by Critical Motifs and Unique Domains.	Int J Mol Sci	19(10)		2018		
46176	30236054	Lou D., Wang H., Yu D.	The sucrose non-fermenting-1-related protein kinases SAPK1 and SAPK2 function collaboratively as positive regulators of salt stress tolerance in rice.	BMC Plant Biol.	18(1)	203	2018		
46177	30279693	Buffon G., Blasi ?ADR., Rativa A.G.S., Lamb T.I., Gastmann R., Adamski J.M., Schwambach J., Ricachenevsky F.K., Heringer A.S., Silveira V., Lopes M.C.B., Sperotto R.A.	Unraveling Rice Tolerance Mechanisms Against <i>Schizotetranychus oryzae</i> Mite Infestation.	Front Plant Sci	9	1341	2018		
46178	30740570	Chen X., Xu P., Zhou J., Tao D., Yu D.	Mapping and breeding value evaluation of a semi-dominant semi-dwarf gene in upland rice.	Plant Divers	40(5)	238-244	2018		
46179	30174519	Zhou X., Li Y., Lai F.	Effects of different water management on absorption and accumulation of selenium in rice.	Saudi J Biol Sci	25(6)	1178-1182	2018		
46180	30466586	Chen H., Xu N., Wu Q., Yu B., Chu Y., Li X., Huang J., Jin L.	OsMADS27 regulates the root development in a NO3--Dependent manner and modulates the salt tolerance in rice (Oryza sativa L.).	Plant Sci.	277	20-32	2018		
46181	30180895	Li G., Jones K.C., Eudes A., Pidatala V.R., Sun J., Xu F., Zhang C., Wei T., Jain R., Birdseye D., Canlas P.E., Baidoo E.E.K., Duong P.Q., Sharma M.K., Singh S., Ruan D., Keasling J.D., Mortimer J.C., Loqu? D., Bartley L.E., Scheller H.V., Ronald P.C.	Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification.	BMC Biotechnol.	18(1)	54	2018		
46182	30262707	Pandian B.A., Joel J., Nachimuthu V.V., Swaminathan M., Govintharaj P., Tannidi S., Sabariappan R.	Marker-aided selection and validation of various <i>Pi</i> gene combinations for rice blast resistance in elite rice variety ADT 43.	J. Genet.	97(4)	945-952	2018		
46183	30225538	Okada S., Sasaki M., Yamasaki M.	A novel Rice QTL qOPW11 Associated with panicle weight Affects Panicle and Plant Architecture.	Rice (N Y)	11(1)	53	2018		
46184	30101415	Du D., Liu M., Xing Y., Chen X., Zhang Y., Zhu M., Lu X., Zhang Q., Ling Y., Sang X., Li Y., Zhang C., He G.	Semi-dominant mutation in the cysteine-rich receptor-like kinase gene, ALS1, conducts constitutive defence response in rice.	Plant Biol (Stuttg)	21(1)	25-34	2019		
46185	30208074	Jochum M., Moncayo L.P., Jo Y.K.	Microalgal cultivation for biofertilization in rice plants using a vertical semi-closed airlift photobioreactor.	PLoS ONE	13(9)	e0203456	2018		
46186	30011122	Naalden D., Haegeman A., de Almeida-Engler J., Birhane Eshetu F., Bauters L., Gheysen G.	The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses.	Mol. Plant Pathol.	19(11)	2416-2430	2018		
46187	30227868	Li X., Wu L., Wang J., Sun J., Xia X., Geng X., Wang X., Xu Z., Xu Q.	Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci.	BMC Biol.	16(1)	102	2018		
46188	30212546	Zaka A., Grande G., Coronejo T., Quibod I.L., Chen C.W., Chang S.J., Szurek B., Arif M., Cruz C.V., Oliva R.	Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae.	PLoS ONE	13(9)	e0203711	2018		
46189	30212760	Zhu C.Q., Cao X.C., Zhu L.F., Hu W.J., Hu A.Y., Bai Z.G., Zhong C., Sun L.M., Liang Q.D., Huang J., Yang S.X., Zhang J.H., Jin Q.Y.	Ammonium mitigates Cd toxicity in rice (Oryza sativa) via putrescine-dependent alterations of cell wall composition.	Plant Physiol. Biochem.	132	189-201	2018		
46190	30261599	Tambara J?nior LUD., Cheriaf M., Rocha J.C.	Development of Alkaline-Activated Self-Leveling Hybrid Mortar Ash-Based Composites.	Materials (Basel)	11(10)		2018		
46191	30278313	Pandey C., Gupta M.	Selenium amelioration of arsenic toxicity in rice shows genotypic variation: A transcriptomic and biochemical analysis.	J. Plant Physiol.	231	168-181	2018		
46192	30209684	Pan W., Shen J., Zheng Z., Yan X., Shou J., Wang W., Jiang L., Pan J.	Overexpression of the Tibetan Plateau annual wild barley (Hordeum spontaneum) HsCIPKs enhances rice tolerance to heavy metal toxicities and other abiotic stresses.	Rice (N Y)	11(1)	51	2018		
46193	30497718	Qu X.P., Li J.S., Wang J.X., Wu L.Y., Wang Y.F., Chen C.J., Zhou M.G., Hou Y.P.	Effects of the dinitroaniline fungicide fluazinam on Fusarium fujikuroi and rice.	Pestic Biochem Physiol	152	98-105	2018		
46194	30262721	Lin W., Guo X., Pan X., Li Z.	Chlorophyll Composition, Chlorophyll Fluorescence, and Grain Yield Change in <i>esl</i> Mutant Rice.	Int J Mol Sci	19(10)		2018		
46195	30222760	Liang Y., Meng L., Lin X., Cui Y., Pang Y., Xu J., Li Z.	QTL and QTL networks for cold tolerance at the reproductive stage detected using selective introgression in rice.	PLoS ONE	13(9)	e0200846	2018		
46196	30258451	Biradar H., Karan R., Subudhi P.K.	Transgene Pyramiding of Salt Responsive Protein 3-1 (<i>SaSRP3-1</i>) and <i>SaVHAc1</i> From <i>Spartina alterniflora</i> L. Enhances salt tolerance in Rice.	Front Plant Sci	9	1304	2018		
46197	30176792	Pillai S.E., Kumar C., Patel H.K., Sonti R.V.	Overexpression of a cell wall damage induced transcription factor, OsWRKY42, leads to enhanced callose deposition and tolerance to salt stress but does not enhance tolerance to bacterial infection.	BMC Plant Biol.	18(1)	177	2018		
46198	30268972	Zhou B., Hu Z.J., Zhang H.J., Li J.Q., Ding W.J., Ma Z.J.	Bioactive staurosporine derivatives from the Streptomyces sp. NB-A13.	Bioorg. Chem.	82	33-40	2019		
46199	30188080	Xie X.M., Fang Z.P., Liao M., Huang Y., Huang X.H.	[Potential to Ensure Safe Production from Rice Fields Polluted with Heavy Cadmium by Combining a Rice Variety with Low Cadmium Accumulation, Humic Acid, and Sepiolite].	Huan Jing Ke Xue	39(9)	4348-4358	2018		
46200	30209741	Divya D., Sahu N., Nair S., Bentur J.S.	Map-based cloning and validation of a gall midge resistance gene, Gm8, encoding a proline-rich protein in the rice variety Aganni.	Mol. Biol. Rep.	45(6)	2075-2086	2018		
46201	30241349	Chen G., Wu C., He L., Qiu Z., Zhang S., Zhang Y., Guo L., Zeng D., Hu J., Ren D., Qian Q., Zhu L.	Knocking Out the Gene <i>RLS1</i> Induces Hypersensitivity to oxidative stress and Premature leaf senescence in Rice.	Int J Mol Sci	19(10)		2018		
46202	30179492	Kitano H., Choi J.H., Ueda A., Ito H., Hagihara S., Kan T., Kawagishi H., Itami K.	Discovery of Plant Growth Stimulants by C-H Arylation of 2-Azahypoxanthine.	Org. Lett.	20(18)	5684-5687	2018		
46203	30466583	He W., Lin L., Wang J., Zhang L., Liu Q., Wei C.	Inhibition of starch branching enzymes in waxy rice increases the proportion of long branch-chains of amylopectin resulting in the comb-like profiles of starch granules.	Plant Sci.	277	177-187	2018		
46204	30356418	Jahan N., Abd Manan F., Mansoor A., Zaidi M.A., Shahwani M.N., Javed M.A.	Development of Novel Protocol to Al3+ Stress Tolerance at Germination Stage in <i>Indica</i> Rice through Statistical Approaches.	ScientificWorldJournal	2018	8180174	2018		
46205	30101570	Huang Y., Zhao S., Fu Y., Sun H., Ma X., Tan L., Liu F., Sun X., Sun H., Gu P., Xie D., Sun C., Zhu Z.	Variation in the regulatory region of FZP causes increases in secondary inflorescence branching and grain yield in rice domestication.	Plant J.	96(4)	716-733	2018		
46206	30206275	Mongiano G., Titone P., Tamborini L., Pilu R., Bregaglio S.	Evolutionary trends and phylogenetic association of key morphological traits in the Italian rice varietal landscape.	Sci Rep	8(1)	13612	2018		
46207	30258455	Wang P., Xu X., Tang Z., Zhang W., Huang X.Y., Zhao F.J.	OsWRKY28 Regulates Phosphate and Arsenate Accumulation, root system Architecture and Fertility in Rice.	Front Plant Sci	9	1330	2018		
46208	30266907	Zhang K., Zhang Y., Wu W., Zhan X., Anis G.B., Rahman M.H., Hong Y., Riaz A., Zhu A., Cao Y., Sun L., Yang Z., Yang Q., Cao L., Cheng S.	qSE7 is a major quantitative trait locus (QTL) influencing stigma exsertion rate in rice (Oryza sativa L.).	Sci Rep	8(1)	14523	2018		
46209	30248965	L?thje S., Martinez-Cortes T.	Membrane-Bound Class III Peroxidases: Unexpected Enzymes with Exciting Functions.	Int J Mol Sci	19(10)		2018		
46210	30233605	Norton G.J., Travis A.J., Douglas A., Fairley S., Alves E.P., Ruang-Areerate P., Naredo M.E.B., McNally K.L., Hossain M., Islam M.R., Price A.H.	Genome Wide Association Mapping of Grain and Straw Biomass Traits in the Rice Bengal and Assam Aus Panel (BAAP) Grown Under Alternate Wetting and Drying and Permanently Flooded Irrigation.	Front Plant Sci	9	1223	2018		
46211	30094919	Guo X., Liu D., Chong K.	Cold signaling in plants: Insights into mechanisms and regulation.	J Integr Plant Biol	60(9)	745-756	2018		
46212	30209320	Mondal T.K., Rawal H.C., Chowrasia S., Varshney D., Panda A.K., Mazumdar A., Kaur H., Gaikwad K., Sharma T.R., Singh N.K.	Draft genome sequence of first monocot-halophytic species Oryza coarctata reveals stress-specific genes.	Sci Rep	8(1)	13698	2018		
46213	29955893	Li S., Li J., Zhang J., Du W., Fu J., Sutar S., Zhao Y., Xia L.	Synthesis-dependent repair of Cpf1-induced double strand DNA breaks enables targeted gene replacement in rice.	J. Exp. Bot.	69(20)	4715-4721	2018		
46214	30175846	Reddy S.H., Kambalimath S.K., Singhal R.K., Chikkakariyappa M.K., Muthurajan R., Rajanna M.P., Sreevathsa R., Sevanthi A.M., Mohapatra T., Sarla N., Chinnusamy V., Krishnan G.S., Singh A.K., Singh N.K., Sharma R.P., Sheshshayee S.M.	Allele-specific analysis of single parent backcross population identifies HOX10 transcription factor as a candidate gene regulating rice root growth.	Physiol Plant			2018		
46215	29982858	Biyiklioglu S., Alptekin B., Ani Akpinar B., Varella A.C., Hofland M.L., Weaver D.K., Bothner B., Budak H.	Correction to: A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice.	Funct. Integr. Genomics	18(5)	611	2018		
46216	30242741	Zhao Y., Jiang C.H., Rehman R.M.A., Zhang H.L., Li J., Li Z.C.	Genetic analysis of roots and shoots in rice seedling by association mapping.	Genes Genomics	41(1)	95-105	2019		
46217	30011129	Xu C., Wang Y., Liu S., Xie Q., He N., Shi C., Niu X., He C., Li C., Tao J.	raxM regulates the AvrXa21 (raxX)-mediated immune response.	Mol. Plant Pathol.	19(11)	2363-2369	2018		
46218	30107076	Zhang H., Zhu S., Liu T., Wang C., Cheng Z., Zhang X., Chen L., Sheng P., Cai M., Li C., Wang J., Zhang Z., Chai J., Zhou L., Lei C., Guo X., Wang J., Wang J., Jiang L., Wu C., Wan J.	DELAYED HEADING Date1 interacts with OsHAP5C/D, delays flowering time and enhances yield in rice.	Plant Biotechnol. J.	17(2)	531-539	2019		
46219	30243763	Peng T., Qiao M., Liu H., Teotia S., Zhang Z., Zhao Y., Wang B., Zhao D., Shi L., Zhang C., Le B., Rogers K., Gunasekara C., Duan H., Gu Y., Tian L., Nie J., Qi J., Meng F., Huang L., Chen Q., Wang Z., Tang J., Tang X., Lan T., Chen X., Wei H., Zhao Q., Tang G.	A Resource for Inactivation of MicroRNAs Using Short Tandem Target Mimic Technology in Model and Crop Plants.	Mol Plant	11(11)	1400-1417	2018		
46220	30233603	Sevanthi A.M.V., Kandwal P., Kale P.B., Prakash C., Ramkumar M.K., Yadav N., Mahato A.K., Sureshkumar V., Behera M., Deshmukh R.K., Jeyaparakash P., Kar M.K., Manonmani S., Muthurajan R., Gopala K.S., Neelamraju S., Sheshshayee M.S., Swain P., Singh A.K., Singh N.K., Mohapatra T., Sharma R.P.	Whole Genome Characterization of a Few EMS-Induced Mutants of Upland Rice Variety Nagina 22 Reveals a Staggeringly High Frequency of SNPs Which Show High Phenotypic Plasticity Towards the Wild-Type.	Front Plant Sci	9	1179	2018		
46221	30236921	Li H., Xu H., Zhou S., Yu Y., Li H., Zhou C., Chen Y., Li Y., Wang M., Wang G.	Distribution and transformation of lead in rice plants grown in contaminated soil amended with biochar and lime.	Ecotoxicol. Environ. Saf.	165	589-596	2018		
46222	29955878	Wu Z., Tang D., Liu K., Miao C., Zhuo X., Li Y., Tan X., Sun M., Luo Q., Cheng Z.	Characterization of a new semi-dominant dwarf allele of SLR1 and its potential application in hybrid rice breeding.	J. Exp. Bot.	69(20)	4703-4713	2018		
46223	30257650	Cheng D., Tan M., Yu H., Li L., Zhu D., Chen Y., Jiang M.	Comparative analysis of Cd-responsive maize and rice transcriptomes highlights Cd co-modulated orthologs.	BMC Genomics	19(1)	709	2018		
46224	29579147	Moin M., Bakshi A., Madhav M.S., Kirti P.B.	Cas9/sgRNA-based genome editing and other reverse genetic approaches for functional genomic studies in rice.	Brief Funct Genomics	17(5)	339-351	2018		
46225	30241091	Chen Y., Gao Y., Zhu H., Romeis J., Li Y., Peng Y., Chen X.	Effects of straw leachates from Cry1C-expressing transgenic rice on the development and reproduction of Daphnia magna.	Ecotoxicol. Environ. Saf.	165	630-636	2018		
46226	30127412	De la Concepcion JC., Franceschetti M., Maqbool A., Saitoh H., Terauchi R., Kamoun S., Banfield M.J.	Publisher Correction: Polymorphic residues in rice NLRs expand binding and response to effectors of the blast pathogen.	Nat Plants	4(9)	734	2018		
46227	30242197	Chai C., Shankar R., Jain M., Subudhi P.K.	Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice.	Sci Rep	8(1)	14218	2018		
46228	30209707	Kong W., Ding L., Cheng J., Wang B.	Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa.	Rice (N Y)	11(1)	52	2018		
46229	30369114	Srisuk N., Sakpuntoon V., Nutaratat P.	Production of Indole-3-Acetic Acid by <i>Enterobacter</i> sp. DMKU-RP206 Using Sweet Whey as a Low-Cost Feed Stock.	J. Microbiol. Biotechnol.	28(9)	1511-1516	2018		
46230	30231853	Robinson A.J., Tamiru M., Salby R., Bolitho C., Williams A., Huggard S., Fisch E., Unsworth K., Whelan J., Lewsey M.G.	AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species.	BMC Plant Biol.	18(1)	200	2018		
46231	30187613	Fernie A.R.	Extending the cascade: identification of a mitogen-activated protein kinase phosphatase playing a key role in rice yield.	Plant J.	95(6)	935-936	2018		
46232	30283477	Mishra R., Joshi R.K., Zhao K.	Genome Editing in Rice: Recent Advances, Challenges, and Future Implications.	Front Plant Sci	9	1361	2018		
46233	30267916	Wang C., Wang W., Sardans J., An W., Zeng C., Abid A.A., Pe?uelas J.	Effect of simulated acid rain on CO2, CH4 and N2O fluxes and rice productivity in a subtropical Chinese paddy field.	Environ. Pollut.	243(Pt B)	1196-1205	2018		
46234	30010993	Grewal R.K., Saraf S., Deb A., Kundu S.	Differentially Expressed MicroRNAs Link Cellular Physiology to Phenotypic Changes in Rice Under Stress Conditions.	Plant Cell Physiol.	59(10)	2143-2154	2018		
46235	30351267	Marroquin-Guzman M., Krotz J., Appeah H., Wilson R.A.	Metabolic constraints on Magnaporthe biotrophy: loss of de novo asparagine biosynthesis aborts invasive hyphal growth in the first infected rice cell.	Microbiology (Reading, Engl.)			2018		
46236	30291199	Julkowska M.M.	Stress Management: OsIDS1 Modulates Histone Deacetylation to Repress Salt Tolerance Genes.	Plant Physiol.	178(2)	505-506	2018		
46237	30380735	Pan T., Lin L., Liu Q., Wei C.	In situ Degradation and Characterization of Endosperm Starch in Waxy Rice with the Inhibition of Starch Branching Enzymes during Seedling Growth.	Int J Mol Sci	19(11)		2018		
46238	30382146	Choi H.Y., Park H., Hong J.K., Kim S.D., Kwon J.Y., You S., Do J., Lee D.Y., Kim H.H., Kim D.I.	N-glycan Remodeling Using Mannosidase Inhibitors to Increase High-mannose Glycans on Acid alpha-Glucosidase in Transgenic Rice Cell Cultures.	Sci Rep	8(1)	16130	2018		
46239	30343386	Mace E., Innes D., Hunt C., Wang X., Tao Y., Baxter J., Hassall M., Hathorn A., Jordan D.	The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement.	Theor. Appl. Genet.			2018		
46240	30367286	Lee K.H., Park S.W., Kim Y.J., Koo Y.J., Song J.T., Seo H.S.	grain width 2 (GW2) and its interacting proteins regulate seed development in rice (Oryza sativa L.).	Botanical Studies	59(1)	23	2018	_,GW2	OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,OsGW2
46241	30291462	Hu J., Chang X., Zou L., Tang W., Wu W.	Identification and fine mapping of Bph33, a new brown planthopper resistance gene in rice (Oryza sativa L.).	Rice (N Y)	11(1)	55	2018	_	Bph33
46242	30341176	Mitchell D., Renda A.J., Douds C.A., Babitzke P., Assmann S.M., Bevilacqua P.C.	In vivo RNA structural probing of uracil and guanine base-pairing by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC).	RNA	25(1)	147-157	2019		
46243	30405678	Formentin E., Sudiro C., Ronci M.B., Locato V., Barizza E., Stevanato P., Ijaz B., Zottini M., De Gara L., Lo Schiavo F.	H2O2 Signature and Innate Antioxidative Profile Make the Difference Between Sensitivity and Tolerance to Salt in Rice Cells.	Front Plant Sci	9	1549	2018		
46244	30107432	Tian L., Xing Y., Fukuda M., Li R., Kumamaru T., Qian D., Dong X., Qu L.Q.	A conserved motif is essential for the correct assembly of proglutelins and for their export from the endoplasmic reticulum in rice endosperm.	J. Exp. Bot.	69(21)	5029-5043	2018		
46245	30327662	Sharma N., Sinha V.B., Gupta N., Rajpal S., Kuchi S., Sitaramam V., Parsad R., Raghuram N.	Phenotyping for Nitrogen Use Efficiency: Rice Genotypes Differ in N-Responsive Germination, Oxygen Consumption, Seed Urease Activities, Root Growth, Crop Duration, and Yield at Low N.	Front Plant Sci	9	1452	2018		
46246	30314465	Xiao G., Li B., Chen H., Chen W., Wang Z., Mao B., Gui R., Guo X.	Overexpression of PvCO1, a bamboo CONSTANS-LIKE gene, delays flowering by reducing expression of the FT gene in transgenic Arabidopsis.	BMC Plant Biol.	18(1)	232	2018		
46247	30361842	Liang J., Guo S., Sun B., Liu Q., Chen X., Peng H., Zhang Z., Xie Q.	Constitutive expression of REL1 confers the rice response to drought stress and abscisic acid.	Rice (N Y)	11(1)	59	2018	_,RSUS2,PIP1A,GLP8-7,DREB1A,SAPK2,_,PIP1;2,ACL2,REL1,DT11	OsMYB2, MYB2,sus2, RSus2(t), SUS2, SS1, OsScS1, RSs1, RSus2, OsSUS2, RSS1, RSus1,OsPIP1a, OsPIP1;1, PIP1a, RWC-1, PIP1-1, RWC1, OsPIP1-1, PIP1;1, PIP1-5,OsGLP8-7, GER6, OsRGLP2, RGLP2,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsSAPK2,OsbHLH148, bHLH148,OsPIP1;2, PIP1-2, OsPIP1-2,OsACL2,OsREL1,OsDT11
46248	30159898	Kobayashi A., Kim H.J., Tomita Y., Miyazawa Y., Fujii N., Yano S., Yamazaki C., Kamada M., Kasahara H., Miyabayashi S., Shimazu T., Fusejima Y., Takahashi H.	Circumnutational movement in rice coleoptiles involves the gravitropic response: analysis of an agravitropic mutant and space-grown seedlings.	Physiol Plant	165(3)	464-475	2019		
46249	30222251	Sugano S., Maeda S., Hayashi N., Kajiwara H., Inoue H., Jiang C.J., Takatsuji H., Mori M.	Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice.	Plant J.	96(6)	1137-1147	2018		
46250	30333842	Misra G., Badoni S., Domingo C.J., Cuevas R.P.O., Llorente C., Mbanjo E.G.N., Sreenivasulu N.	Deciphering the Genetic Architecture of Cooked Rice Texture.	Front Plant Sci	9	1405	2018		
46251	30311098	Chang Z., Jin M., Yan W., Chen H., Qiu S., Fu S., Xia J., Liu Y., Chen Z., Wu J., Tang X.	The ATP-binding cassette (ABC) transporter OsABCG3 is essential for pollen development in rice.	Rice (N Y)	11(1)	58	2018		
46252	30287379	Li H., Wen Y., Wang J., Sun B.	Relations between chain-length distribution, molecular size, and amylose content of rice starches.	Int. J. Biol. Macromol.	120(Pt B)	2017-2025	2018		
46253	30282746	Guerriero G., Stokes I., Exley C.	Is callose required for silicification in plants?	Biol. Lett.	14(10)		2018		
46254	30279356	Ji Z., Wang C., Zhao K.	Rice Routes of Countering <i>Xanthomonas oryzae</i>.	Int J Mol Sci	19(10)		2018		
46255	30409674	Bao G., Ashraf U., Wang C., He L., Wei X., Zheng A., Mo Z., Tang X.	Molecular basis for increased 2-acetyl-1-pyrroline contents under alternate wetting and drying (AWD) conditions in fragrant rice.	Plant Physiol. Biochem.	133	149-157	2018		
46256	30102323	Yang Y., Chou H.L., Crofts A.J., Zhang L., Tian L., Washida H., Fukuda M., Kumamaru T., Oviedo O.J., Starkenburg S.R., Okita T.W.	Selective sets of mRNAs localize to extracellular paramural bodies in a rice glup6 mutant.	J. Exp. Bot.	69(21)	5045-5058	2018	GLUA3,_,GLUB1,_,_,_,GLUA1,GLUA2,_,GLUB5,RBPD,GLUC,_,GLUB4,_,_,_,GLUD1,_,_,_,GLU7,_,_,GLB1,GLUBX,_,GLUP6,_,_,_	Glua3*, GLUA-3, GT22, GT3, Glu21, GluA-3, OsEnS-47, EnS-47, GLU3,Prol-21, pro13b.2, PROLM20,GluB1, GluB1-A, GluB-1, OsGluB1,CysP13, CpP13, PG5a, Prol-06, pro13b.11, pro13b.12, PROLM9,Prol-04, pro13b.8, PROLM4,RP6, Prol-18, OsEnS-93, pro13a.1, PROLM25,Glua1*, Glua1, GLUA-1, GluA-1, GluA1, Glu19, OsEnS-16,Glua2*, Glua2, GLUA-2, GluA-2, Glu20, GluA2, OsEnS-137,Prol-20, pro13b.1, PROLM19 ,GluB5, GLU2.3 ,OsRBP-D, RBP-D,GluC, OsEnS-36, EnS-36, GLU2.2,Prol-23, pro10.4, SSA5,GluB4, GluB-5,pro13b.15, PROLM11,OsEnS-32, EnS-32,Prol-25, Prol-28, Prol-29, Prol-30, pro13a.4, PROLM28,GluD1, GluD-1, OsEnS-33, EnS-33,Prol-05, pro13b.9,,,Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7,Prol-10, pro13b.16, PROLM12,,glb1(t)*, glb1(t), glb1, alpha-Glb, Glb-1, OsGlb1, Glb, OsEnS-77,OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1,,glup6(t), Glup6(t), Glup6, OsVPS9A, VPS9a, GPA2/VPS9a, GPA2, GLUP6/GEF,Prol-19, OsEnS-94, RM1, pro13a.2, PROLM26,Prol-22, pro13b.3, PROLM22,Prol-11, pro13b.17, PROLM13
46257	30297755	Wu Y., Zhao S., Li X., Zhang B., Jiang L., Tang Y., Zhao J., Ma X., Cai H., Sun C., Tan L.	Deletions linked to PROG1 gene participate in plant architecture domestication in Asian and African rice.	Nat Commun	9(1)	4157	2018	_,_,PROG1,_	ZnF8, OrZnF8,ZnF7, OrZnF7,OsPROG1,ZnF5, OrZnF5
46258	30414570	Sarkar A., Pramanik K., Mitra S., Soren T., Maiti T.K.	Enhancement of growth and salt tolerance of rice seedlings by ACC deaminase-producing Burkholderia sp. MTCC 12259.	J. Plant Physiol.	231	434-442	2018		
46259	30350245	Takaiwa F., Ogo Y., Wakasa Y.	Specific region affects the difference in accumulation levels between apple food allergen Mal d 1 and birch pollen allergen Bet v 1 which are expressed in vegetative tissues of transgenic rice.	Plant Mol. Biol.	98(4-5)	439-454	2018		
46260	30253007	Forlani G., Bertazzini M., Cagnano G.	Stress-driven increase in proline levels, and not proline levels themselves, correlates with the ability to withstand excess salt in a group of 17 Italian rice genotypes.	Plant Biol (Stuttg)	21(2)	336-342	2019		
46261	30391410	Zhou X., Jiang G., Yang L., Qiu L., He P., Nong C., Wang Y., He Y., Xing Y.	Gene diagnosis and targeted breeding for blast-resistant Kongyu 131 without changing regional adaptability.	J Genet Genomics	45(10)	539-547	2018		
46262	30229625	Wan Y.N., Liu Z., Aboubacar Y.C., Yu Y., Wang Q., Li H.F.	[Lead Uptake and Accumulation in Rice (<i>Oryza sativa</i> L.) with Water Management and Selenite Fertilization].	Huan Jing Ke Xue	39(10)	4759-4765	2018		
46263	30510730	Adedayo B.C., Adebayo A.A., Nwanna E.E., Oboh G.	Effect of cooking on glycemic index, antioxidant activities, alpha-amylase, and alpha-glucosidase inhibitory properties of two rice varieties.	Food Sci Nutr	6(8)	2301-2307	2018		
46264	30364694	Chutimanukul P., Kositsup B., Plaimas K., Buaboocha T., Siangliw M., Toojinda T., Comai L., Chadchawan S.	Data in support of photosynthetic responses in a chromosome segment substitution line of 'Khao Dawk Mali 105' rice at seedling stage.	Data Brief	21	307-312	2018		
46265	30466594	Wang Z., Chen M., Zhang Y., Huang L., Wang S., Tao Y., Qian P., Mijiti A., Gu A., Zhang H., Shi S., Cheng H., Wu Y., Xiao L., Ma H.	A cupin domain is involved in alpha-amylase inhibitory activity.	Plant Sci.	277	285-295	2018		
46266	30302902	Huang Y., Bai X., Luo M., Xing Y.	short panicle 3 controls panicle architecture by upregulating APO2/RFL and increasing cytokinin content in rice.	J Integr Plant Biol			2018	GN1A,IPT3,RFL,CKX5,CKX3,CKX9,IPT7	Gn1a, OsCKX2, CKX2, ckx2, Gn1a/OsCKX2, Os CKX2, CKX2/Gn1a,OsIPT3,RFL, OSL, FL, APO2, APO2/RFL, SSC, SSC/RFL/APO2 ,OsCKX5, ckx5,OsCKX3, ckx3,OsCKX9,OsIPT7
46267	30402456	Chen J., Li L.	Multiple Regression Analysis Reveals MicroRNA Regulatory Networks in <i>Oryza sativa</i> under Drought Stress.	International Journal of Genomics	2018	9395261	2018		
46268	30336276	Shan J., Cai Z., Zhang Y., Xu H., Rao J., Fan Y., Yang J.	The underlying pathway involved in inter-subspecific hybrid male sterility in rice.	Genomics			2018		
46269	30368115	Wang Y., Cui Y., Hu G., Wang X., Chen H., Shi Q., Xiang J., Zhang Y., Zhu D., Zhang Y.	Reduced bioactive gibberellin content in rice seeds under low temperature leads to decreased sugar consumption and low seed germination rates.	Plant Physiol. Biochem.	133	1-10	2018		
46270	30405671	Sawada T., Itoh M., Nakamura Y.	Contributions of Three Starch Branching Enzyme Isozymes to the Fine Structure of Amylopectin in Rice Endosperm.	Front Plant Sci	9	1536	2018		
46271	30382312	Hu Y., Li S., Xing Y.	Lessons from natural variations: artificially induced heading date variations for improvement of regional adaptation in rice.	Theor. Appl. Genet.	132(2)	383-394	2019		
46272	30386414	Bureau C., Lanau N., Ingouff M., Hassan B., Meunier A.C., Divol F., Sevilla R., Mieulet D., Dievart A., P?rin C.	A protocol combining multiphoton microscopy and propidium iodide for deep 3D root meristem imaging in rice: application for the screening and identification of tissue-specific enhancer trap lines.	Plant Methods	14	96	2018		
46273	30341356	Poli Y., Balakrishnan D., Desiraju S., Panigrahy M., Voleti S.R., Mangrauthia S.K., Neelamraju S.	Genotype?~?Environment interactions of Nagina22 rice mutants for yield traits under low phosphorus, water limited and normal irrigated conditions.	Sci Rep	8(1)	15530	2018		
46274	30347730	Jiang J.Z., Kuo C.H., Chen B.H., Chen M.K., Lin C.S., Ho S.L.	Effects of <i>OsCDPK1</i> on the Structure and Physicochemical Properties of Starch in Developing Rice Seeds.	Int J Mol Sci	19(10)		2018		
46275	30337936	Cui Y., Zhang F., Zhou Y.	The Application of Multi-Locus GWAS for the Detection of <EM class="gene">salt-tolerance</EM> Loci in Rice.	Front Plant Sci	9	1464	2018		
46276	30471734	Fang C., Li L., Zhang P., Wang D., Yang L., Reza B.M., Lin W.	Lsi1 modulates the antioxidant capacity of rice and protects against ultraviolet-B radiation.	Plant Sci.	278	96-106	2019		
46277	30322083	Yu J., Zhao W., Tong W., He Q., Yoon M.Y., Li F.P., Choi B., Heo E.B., Kim K.W., Park Y.J.	A Genome-Wide Association Study Reveals Candidate Genes Related to salt tolerance in Rice (<i>Oryza sativa</i>) at the Germination Stage.	Int J Mol Sci	19(10)		2018		
46278	30459776	Zhu Z., Li X., Wei Y., Guo S., Sha A.	Identification of a Novel QTL for panicle length From Wild Rice (<i>Oryza minuta</i>) by Specific Locus Amplified Fragment Sequencing and High Density Genetic Mapping.	Front Plant Sci	9	1492	2018		
46279	30289560	Vishal B., Krishnamurthy P., Ramamoorthy R., Kumar P.P.	OsTPS8 controls yield-related traits and confers salt stress tolerance in rice by enhancing suberin deposition.	New Phytol.	221(3)	1369-1386	2019		
46280	30369468	Wu B., Hu W., Xing Y.Z.	[The history and prospect of rice genetic breeding in China].	Yi Chuan	40(10)	841-857	2018		
46281	30359375	C H B., S BN., V AK., G H., H K MS., Sk H., T DK., M A., R R K., A Y., K P., M B V N K., K S., V P B., A S H., G S L., G R., S M B., M S M., P S., A R F., B C V., A G., B P M S., Ali J., R M S.	Marker-assisted pyramiding of two major, broad-spectrum bacterial blight resistance genes, Xa21 and Xa33 into an elite maintainer line of rice, DRR17B.	PLoS ONE	13(10)	e0201271	2018	XA33,XA21	Xa33,Xa21*, Xa21, OsXA21
46282	30347700	Fletcher J.C.	The CLV-WUS Stem Cell Signaling Pathway: A Roadmap to Crop Yield Optimization.	Plants (Basel)	7(4)		2018		
46283	30285603	Chen G., Zou Y., Hu J., Ding Y.	Genome-wide analysis of the rice PPR gene family and their expression profiles under different stress treatments.	BMC Genomics	19(1)	720	2018		
46284	30300786	Saenguthai K., Chomean S., Kaset C.	The evaluation of Oryza sativa L (Black rice) extracts for detection of spermatozoa on the clothing and vaginal swab samples.	Leg Med (Tokyo)	35	91-97	2018		
46285	30372430	Wang A., Shu X., Niu X., Zhao W., Ai P., Li P., Zheng A.	Comparison of gene co-networks analysis provide a systems view of rice (Oryza sativa L.) response to Tilletia horrida infection.	PLoS ONE	13(10)	e0202309	2018	_,WRKY70,STI1A,_,PR10A,_,_,IAA20,HSP71.1,PR1B,BGLU12,ABA8OX2,SDG725,WRKY24,CRL1L2,TPKB,HD5,_	OsMyb3, OSMYB3, MYB3,OsWRKY70,OsHop/Sti1a, Hop/Sti1a, Sti1a,OsVPE4, VPE4, OsaLeg4, Leg4,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsCK2alpha3, CK2alpha3, OsCKA2-3, CKA2-3,OsMyb4, OSMYB4, MYB4, OsEnS-11, OsGL1C, GL1C,OsIAA20,OsHsp71.1, OsHSP71.1, OsMED37_3, MED37_3 ,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,Os4bglu12, Os4BGlu12, 4BGlu12, OsTAGG2, TAGG2,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,OsSDG725, OsSET8, ASHH2,OsWRKY24,OsCrll2, Crll2,TPKb, OsTPKb,Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,PsbP
46286	30466578	Pandiarajan R., Grover A.	In vivo promoter engineering in plants: Are we ready?	Plant Sci.	277	132-138	2018		
46287	30053197	Julia C.C., Rose T.J., Pariasca-Tanaka J., Jeong K., Matsuda T., Wissuwa M.	Phosphorus uptake commences at the earliest stages of seedling development in rice.	J. Exp. Bot.	69(21)	5233-5240	2018		
46288	30051586	Hua K., Tao X., Zhu J.K.	Expanding the base editing scope in rice by using Cas9 variants.	Plant Biotechnol. J.	17(2)	499-504	2019		
46289	30405680	Fu J., Song X., Liu B., Shi Y., Shen W., Fang Z., Zhang L.	Fitness Cost of Transgenic <i>cry1Ab/c</i> Rice Under Saline-Alkaline Soil Condition.	Front Plant Sci	9	1552	2018		
46290	30101427	Stella de Freitas TF., Stout M.J., Sant'Ana J.	Effects of exogenous methyl jasmonate and salicylic acid on rice resistance to Oebalus pugnax.	Pest Manag. Sci.	75(3)	744-752	2019		
46291	30296601	Zhu Q., Zeng D., Yu S., Cui C., Li J., Li H., Chen J., Zhang R., Zhao X., Chen L., Liu Y.G.	From Golden Rice to aSTARice: Bioengineering Astaxanthin Biosynthesis in Rice Endosperm.	Mol Plant	11(12)	1440-1448	2018		
46292	30340520	Feng B., Zhang C., Chen T., Zhang X., Tao L., Fu G.	Salicylic acid reverses pollen abortion of rice caused by heat stress.	BMC Plant Biol.	18(1)	245	2018	DTM1,_,EAT1	OsDTM1,OsTDL1A, TDL1A, MIL2, OsTDL1A/MIL2, OsTDL1a ,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD
46293	30286719	Yang M., Xu Z., Zhao W., Liu Q., Li Q., Lu L., Liu R., Zhang X., Cui F.	Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus.	BMC Plant Biol.	18(1)	219	2018		
46294	30339812	Zhang S., Lin J., Su L., Zhou Z.	pDHS-DSET: Prediction of DNase I hypersensitive sites in plant genome using DS evidence theory.	Anal. Biochem.	564-565	54-63	2019		
46295	30207632	Lee T.K., Lee D., Yu J.S., Jo M.S., Baek S.C., Shin M.S., Ko Y.J., Kang K.S., Kim K.H.	Biological Evaluation of a New Lignan from the Roots of Rice (Oryza sativa).	Chem. Biodivers.	15(11)	e1800333	2018		
46296	30361672	Xu C., Cheng J., Lin H., Lin C., Gao J., Shen Z.	Characterization of transgenic rice expressing fusion protein Cry1Ab/Vip3A for insect resistance.	Sci Rep	8(1)	15788	2018		
46297	30325666	Whitehouse K.J., Owoborode O.F., Adebayo O.O., Oyatomi O.A., Olaniyan A.B., Abberton M.T., Hay F.R.	Further Evidence That the Genebank Standards for Drying Orthodox Seeds May Not Be Optimal for Subsequent seed longevity.	Biopreserv Biobank	16(5)	327-336	2018		
46298	30239708	Chen S., Saito N., Encabo J.R., Yamada K., Choi I.R., Kishima Y.	Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution.	Genome Biol Evol	10(10)	2686-2696	2018		
46299	30325151	Tian C., Zhou X., Liu Q., Xie G.X., Rong X.M., Zhang Y.P., Huang S.Y., Peng J.W.	Effects of the reduction of controlled-release urea application on nitrogen leaching in double cropping paddy field.	Ying Yong Sheng Tai Xue Bao	29(10)	3267-3274	2018		
46300	30744894	Wang H., Guo Z., Shen W., Lou Y.	Increasing tolerance to bispyribac-sodium is able to allow glutathione homeostasis to recover in indica rice compared with japonica rice.	Pestic Biochem Physiol	153	28-35	2019		
46301	29931324	Qi M., Li Z., Liu C., Hu W., Ye L., Xie Y., Zhuang Y., Zhao F., Teng W., Zheng Q., Fan Z., Xu L., Lang Z., Tong Y., Zhang Y.	CGT-seq: epigenome-guided de novo assembly of the core genome for divergent populations with large genome.	Nucleic Acids Res.	46(18)	e107	2018		
46302	30247132	Ejaz M., Raja N.I., Mashwani Z.U., Ahmad M.S., Hussain M., Iqbal M.	Effect of silver nanoparticles and silver nitrate on growth of rice under biotic stress.	IET Nanobiotechnol	12(7)	927-932	2018		
46303	30359900	Huang G., Ding C., Zhou Z., Zhang T., Wang X.	A tillering application of zinc fertilizer based on basal stabilization reduces Cd accumulation in rice (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	167	338-344	2019		
46304	30753229	Suk-Man Kim, Russell F Reinke	A novel resistance gene for bacterial blight in rice, Xa43(t) identified by GWAS, confirmed by QTL mapping using a bi-parental population.	PLoS ONE	14(2)	e0211775	2019	XA43	Xa43(t), Xa43
46305	20494951	Li L., Zhen-Ying Shi, Li L., Ge-Zhi Shen, Xin-Qi Wang, Lin-Sheng An, Jing-Liu Zhang	Overexpression of ACL1 (abaxially curled leaf 1) increased Bulliform cells and induced Abaxial curling of leaf blades in rice.	Mol Plant	3(5)	807-17	2010	ACL1,ACL2	OsACL1, ACL2, OsACL2,OsACL2
46306	0	Chen L.	Rac/Rop Small GTPases in Rice Innate Immunity	Thesis			2010	STI1A,_,RAC5,_,_,RAC3,RAC1,RAC4,PR10A,PAL1,STI1B,RAC7,RAC6	OsHop/Sti1a, Hop/Sti1a, Sti1a,Os-FLS2, FLS2, OsFLS2,Osrac5, OsRac5, RACD, OsRacD, OsRACD,OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsRac3,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsRAC4, OsRac4, ROP4, OsRop4,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsHop/Sti1b, Hop/Sti1b, Sti1b,OSRAC7, OsRac7, ROP5, OsRop5,OsRacB, RacB, OsRac6
46307	20227662	Chen L., Hamada S., Fujiwara M., Zhu T., Nguyen Phuong Thao, Hann Ling Wong, Krishna P., Ueda T., Kaku H., Shibuya N., Kawasaki T., Shimamoto K.	The Hop/Sti1-Hsp90 chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate immunity.	Cell Host Microbe	7(3)	185-96	2010	_,PR10A,_,STI1A,_,PAL1,STI1B,RAC1	OsCERK1, CERK1, OsLysM-RLK9, Os-CERK1, Os-LysM-RLK9, OsLysMRLK9,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsSERK1, OsBAK1, OsSERK1/OsBAK1, OsBISERK1, OsSerk1, OsBAK1-1, 08SG2/OsBAK1, 08SG2, SG2,OsHop/Sti1a, Hop/Sti1a, Sti1a,Os-FLS2, FLS2, OsFLS2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsHop/Sti1b, Hop/Sti1b, Sti1b,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
46308	30838015	Chen W., Sheng Z., Cai Y., Li Q., Wei X., Xie L., Jiao G., Shao G., Tang S., Wang J., Hu P.	Rice Morphogenesis and Chlorophyll Accumulation Is Regulated by the Protein Encoded by <i>NRL3</i> and Its Interaction With NAL9.	Front Plant Sci	10	175	2019	VYL	OsClpP6, ClpP6, CLP6, NAL9, NAL9/VYL
46309	20171575	Huang J., Tang D., Shen Y., Qin B., Hong L., You A., Li M., Wang X., Yu H., Gu M., Cheng Z.	Activation of gibberellin 2-oxidase 6 decreases active gibberellin levels and creates a dominant semi-dwarf phenotype in rice (Oryza sativa L.).	J Genet Genomics	37(1)	23-36	2010	GA2OX6	OsGA2ox6
46310	0	Hyun-Su Park, Mun-Sik Shin, Ki-Young Kim, Tae-Hwan Noh, So-Hyeon Baek, Jong-Hee Lee, Ki-Yong Ha, Man-Kee Baek, Woo-Jae Kim, Jong-Ho Park, Jae-Soo Yoo, Young-Chan Cho, Bo-Kyeong Kim	Reaction of Single Resistance Genes and Their Pyramiding Effects in Indica and Japonica Rice Against Xanthomonas oryzae pv. oryzae in Korea	Kor. J. Breed. Sci.	45(2)	119-129	2013	XA3	Xa-3, Xa3 (Xa4b, Xa6, Xa9, Xa w), Xa3, Xaw, Xa6, Xa9, Xa4-b, XA26, Xa26(t), Xa26(t)*, Xa26, RKb, MRKb, MRKB, TRKb, Xa3/Xa26
46311	27250677	Kretzschmar T., Margaret Anne F Pelayo, Kurniawan R Trijatmiko, Lourd Franz M Gabunada, Alam R., Jimenez R., Merlyn S Mendioro, Inez H Slamet-Loedin, Sreenivasulu N., Julia Bailey-Serres, Abdelbagi M Ismail, David J Mackill, Endang M Septiningsih	A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.	Nat Plants	1	15124	2015	TPP7	OsTPP7
46312	31136613	Ram H., Kaur A., Gandass N., Singh S., Deshmukh R., Sonah H., Tilak Raj Sharma	Molecular characterization and expression dynamics of MTP genes under various spatio-temporal stages and metal stress conditions in rice.	PLoS ONE	14(5)	e0217360	2019	MTP8.1,MTP7,MTP12,MTP11.1,MTP5,MTP8,MTP1,MTP9,MTP11,MTP6	OsMTP8.1,OsMTP7,OsMTP12,OsMTP11.1,OsMTP5,OsMTP8, MTP8.2, OsMTP8.2,OsMTP1,OsMTP9,OsMTP11,OsMTP6
46313	27251715	Ueno D., Sasaki A., Yamaji N., Miyaji T., Fujii Y., Takemoto Y., Moriyama S., Che J., Moriyama Y., Iwasaki K., Jian Feng Ma	A polarly localized transporter for efficient manganese uptake in rice.	Nat Plants	1	15170	2015	MTP9	OsMTP9
46314	30945026	Luan X., Liu S., Ke S., Dai H., Xin-Ming Xie, Tzung-Fu Hsieh, Xiang-Qian Zhang	Epigenetic modification of ESP, encoding a putative long noncoding RNA, affects panicle architecture in rice.	Rice (N Y)	12(1)	20	2019	ESP	OsESP
46315	30796160	Shi C., Ren Y., Liu L., Wang F., Zhang H., Tian P., Pan T., Wang Y., Jing R., Liu T., Wu F., Lin Q., Lei C., Zhang X., Zhu S., Guo X., Wang J., Zhao Z., Wang J., Zhai H., Cheng Z., Wan J.	Ubiquitin Specific Protease 15 Has an Important Role in Regulating grain width and Size in Rice.	Plant Physiol.	180(1)	381-391	2019	LG1,GW2,DA1	OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1,OsGW2,OsDA1
46316	30885124	Liu J., Cui L., Xie Z., Zhang Z., Liu E., Peng X.	Two NCA1 isoforms interact with CATALASE in a mutually exclusive manner to redundantly regulate its activity in rice.	BMC Plant Biol.	19(1)	105	2019	CATC,NCA1B,NCA1A	OsCat, OsCatC, OsCATC, NOE1, noe1, catC, OsCATC, CAT3, OsCAT3,OsNCA1b, NCA1b,OsCOIN, COIN, OsNCA1a, NCA1a
46317	31037442	Zhao C., Liu C., Zhang Y., Cui Y., Hu H., Jahan N., Lv Y., Qian Q., Guo L.	A 3-bp deletion of WLS5 gene leads to weak growth and early leaf senescence in rice.	Rice (N Y)	12(1)	26	2019	WLS5	OsWLS5
46318	30918083	He Y., Yan L., Ge C., Xue-Feng Yao, Han X., Wang R., Xiong L., Jiang L., Chun-Ming Liu, Zhao Y.	<i>PINOID</i> Is Required for Formation of the Stigma and Style in Rice.	Plant Physiol.	180(2)	926-936	2019	PIDL1 ,PIDB,NPY2 ,WAG ,BIF2	OsPIDL1 ,OsPIDb, PIDb,OsNPY2 ,OsWAG ,bif2, Osbif2, OsBIF2, OsPID, PID
46319	30888525	Kamolsukyeunyong W., Ruengphayak S., Chumwong P., Kusumawati L., Chaichoompu E., Jamboonsri W., Saensuk C., Phoonsiri K., Toojinda T., Vanavichit A.	Identification of spontaneous mutation for broad-spectrum brown planthopper resistance in a large, long-term fast neutron mutagenized rice population.	Rice (N Y)	12(1)	16	2019	RLCK135,_,_,_,BPH9,PT13,BPH32,LR10,_,_,VWR	OsRLCK135, OsLecRK3, LecRK3,OsFbox182, Os_F0223, F-box118,OsFbox183, Fbox183, Os_F0203, F-box119,STPS, OsSTPS, OsSTPS2, STPS2 ,Bph9, BPH9/26,OsPT13, PHT1-13, OsPht1;13, ORYsa;PHT1;13,Bph32,OsLR10,OsLecRK2, LecRK2,DEFL10, OsDEFL10, OsDf-10, Df-10,OsVWR
46320	30413617	Su Z., Tang Y., Ritchey L.E., Tack D.C., Zhu M., Bevilacqua P.C., Assmann S.M.	Genome-wide RNA structurome reprogramming by acute heat shock globally regulates mRNA abundance.	Proc. Natl. Acad. Sci. U.S.A.	115(48)	12170-12175	2018	RSR1,_,IAA14,HOX16	AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,OsIAA14, AUX/IAA14, OsAUX/IAA14 ,Oshox16, OsHox16
46321	30446618	Yan X., Akiyama H.	Overestimation of N2O mitigation potential by water management in rice paddy fields.	Proc. Natl. Acad. Sci. U.S.A.	115(48)	E11204-E11205	2018		
46322	30446617	Kritee K., Rudek J., Hamburg S.P., Adhya T.K., Loecke T., Ahuja R.	Reply to Yan and Akiyama: Nitrous oxide emissions from rice and their mitigation potential depend on the nature of intermittent flooding.	Proc. Natl. Acad. Sci. U.S.A.	115(48)	E11206-E11207	2018		
46323	30446614	Wang Q., Li Y., Ishikawa K., Kosami K.I., Uno K., Nagawa S., Tan L., Du J., Shimamoto K., Kawano Y.	Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity.	Proc. Natl. Acad. Sci. U.S.A.	115(49)	E11551-E11560	2018	PIA,PIT,RAC1	Pi a, Pia, Pi-a, Pia-1, Pia-2,Pit, Pit(K59), Pit(Npb), Pi-t, PitNpb, PitK59,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1
46324	30464344	Shabek N., Ticchiarelli F., Mao H., Hinds T.R., Leyser O., Zheng N.	Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.	Nature	563(7733)	652-656	2018	D14,D3,D53	d14(d10), dwf13, d10, d14, D88, HTD2, OsD14, qPPB3, D88/D14, HTD4,d3, dwf3, D3/OsMAX2, Os_F0760, SOL1, OsORE9, ORE9, MAX2, OsRFPH2-10, RFPH2-10, OsD3,D53(D K3), DK3, Dwf34, SMXL6/7/8
46325	30291357	Stein J.C., Yu Y., Copetti D., Zwickl D.J., Zhang L., Zhang C., Chougule K., Gao D., Iwata A., Goicoechea J.L., Wei S., Wang J., Liao Y., Wang M., Jacquemin J., Becker C., Kudrna D., Zhang J., Londono C.E.M., Song X., Lee S., Sanchez P., Zuccolo A., Ammiraju J.S.S., Talag J., Danowitz A., Rivera L.F., Gschwend A.R., Noutsos C., Wu C.C., Kao S.M., Zeng J.W., Wei F.J., Zhao Q., Feng Q., El Baidouri M., Carpentier M.C., Lasserre E., Cooke R., da Rosa Farias D., da Maia LC., Dos Santos RS., Nyberg K.G., McNally K.L., Mauleon R., Alexandrov N., Schmutz J., Flowers D., Fan C., Weigel D., Jena K.K., Wicker T., Chen M., Han B., Henry R., Hsing Y.C., Kurata N., de Oliveira AC., Panaud O., Jackson S.A., Machado C.A., Sanderson M.J., Long M., Ware D., Wing R.A.	Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.	Nat. Genet.	50(11)	1618	2018		
46326	30385630	Lang Z., Gong Z.	A role of <i>OsROS1</i> in aleurone development and nutrient improvement in rice.	Proc. Natl. Acad. Sci. U.S.A.	115(46)	11659-11660	2018	RISBZ1,TA2,RPBF	OsbZIP58, OsEnS-92, OsSMF1, SMF1, OsRISBZ1,ROS1A, ROS1a, DME1, OsROS1A, OsROS1, ROS1, mOsROS1 ,OsDof3, OsDOF3, OsEnS-34, OsDof10, Dof10, OsDof-10, OsDOF1, DOF1, DOF3, OsRPBF
46327	30453087	Liu X., Chai J., Ou X., Li M., Liu Z.	Structural Insights into Substrate Selectivity, Catalytic Mechanism, and Redox Regulation of Rice Photosystem II Core Phosphatase.	Mol Plant	12(1)	86-98	2019	_	OsPP2C01, PP2C01, OsPP2C1, PP2C1, OsPP1, OsPBCP, PBCP 
46328	30456598	Zhang F., Zhang Y.C., Zhang J.P., Yu Y., Zhou Y.F., Feng Y.Z., Yang Y.W., Lei M.Q., He H., Lian J.P., Chen Y.Q.	Rice UCL8, a plantacyanin gene targeted by miR408, regulates fertility by controlling pollen tube germination and growth.	Rice (N Y)	11(1)	60	2018	MIR408,PKIWI,UCL8	miR408, osa-MIR408osa-miR408 osa-miR408-3p osa-miR408-5p, OsMIR408 ,OsPKIWI, PKIWI502,OsUCL8
46329	30465114	Mukherjee S., Sengupta S., Mukherjee A., Basak P., Majumder A.L.	Abiotic stress regulates expression of Galactinol synthase genes post-transcriptionally through intron retention in rice.	Planta	249(3)	891-912	2019	GOLS1,WSI76	OsGolS1, GolS1,wsi76, OsLEA24/OsGolS2, OsGolS2/OsLEA24, OsLEA24, OsGolS2, GolS2, LEA24
46330	30441812	Matsuta S., Nishiyama A., Chaya G., Itoh T., Miura K., Iwasaki Y.	Characterization of Heterotrimeric G Protein gamma4 Subunit in Rice.	Int J Mol Sci	19(11)		2018	DEP1	OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3
46331	30456014	Shi F., Yang X., Zeng H., Guo L., Qiu D.	Label-free quantitative proteomic analysis revealed a positive effect of ectopic over-expression of PeaT1 from <i>Alternaria tenuissima</i> on rice (<i>Oryza sativa</i>) response to drought.	3 Biotech	8(11)	480	2018		
46332	30498503	Wang D.H., Song W., Wei S.W., Zheng Y.F., Chen Z.S., Han J.D., Zhang H.T., Luo J.C., Qin Y.M., Xu Z.H., Bai S.N.	Characterization of the Ubiquitin C-Terminal Hydrolase and Ubiquitin-Specific Protease Families in Rice (<i>Oryza sativa</i>).	Front Plant Sci	9	1636	2018	UBP14-1,UBP12,UBP4-8,UBP3,UBP10,UBP14-3,SPO11-5,_,UBP9-2,UBP2-3,_,_,FLA,UBP7-5,UBP1-4,UBP14-2,UBP1-10,UBP4-3,UBP2-1,UBP1-9,UBP11,UBP7-7,UBP4-2,UBP4-7,UBP1-8,UCH,_,UBP6,UCH2,UCH4,UBP5-3,UBP1-6,UBP1-3,UCH3,UBP1-1,UCH1,UBP4-1,UBP4-6,LG1,UBP7-6,UBP7-3,UBP7-2,UBP1-2,UCH5,UBP2-2,UBP1-7,UBP4-4,UBP8,UBP9-1,UBP1-5	OsUBP14-1,OsUBP12, OsUBP27, UBP27,OsUBP4-8, OsUBP8, UBP8,OsUBP3, OsUBP6, UBP6,OsUBP10,OsUBP14-3,OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35,OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28,OsUBP9-2, OsUBP34, UBP34,OsUBP2-3, OsUBP3, UBP3,OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12,OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13,UBP4-5, OsUBP4-5, OsUBP5, UBP5, OsFLA,OsUBP7-5, OsUBP19, UBP19,OsUBP1-4, OsUBP2, UBP2,OsUBP14-2, OsUBP24, UBP24,OsUBP1-10,OsUBP4-3,OsUBP2-1, OsUBP18, UBP18,OsUBP1-9, OsUBP1, UBP1,OsUBP11, OsUBP26, UBP26,OsUBP7-7, OsUBP16, UBP16,OsUBP4-2, OsUBP10, UBP10,OsUBP4-7,OsUBP1-8, OsUBP33, UBP33,OsUCH,OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7,OsUBP6, OsUBP14, UBP14,OsUCH2,OsUCH4,OsUBP5-3, OsUBP21, UBP21,OsUBP1-6,OsUBP1-3,OsUCH3,OsUBP1-1, OsUBP29, UBP29,OsUCH1,OsUBP4-1,OsUBP4-6, OsUBP11, UBP11,OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1,OsUBP7-6, OsUBP17, UBP17,OsUBP7-3, OsUBP25, UBP25,OsUBP7-2, OsUBP23, UBP23,OsUBP1-2, OsUBP30, UBP30,OsUCH5,OsUBP2-2, OsUBP4, UBP4,OsUBP1-7, OsUBP32, UBP32,OsUBP4-4, OsUBP9, UBP9,OsUBP8, OsUBP20, UBP20,OsUBP9-1, OsUBP22, UBP22,OsUBP1-5, OsUBP31, UBP31
46333	30444888	Moon S.J., Park H.J., Kim T.H., Kang J.W., Lee J.Y., Cho J.H., Lee J.H., Park D.S., Byun M.O., Kim B.G., Shin D.	OsTGA2 confers disease resistance to rice against leaf blight by regulating expression levels of disease related genes via interaction with NH1.	PLoS ONE	13(11)	e0206910	2018	ERD1,_,YSL13,_,NH2,_,NH1,_,_,BZIP28,_,BZIP3,AP2/EREBP129,BZIP8,PR1A,_	CLPD1, ClpD1, OsERD1, OSClpD, osClpD, OsClpD1, OsClpD1.1, OsClpD1.2, OsClpD1.3, OsClpD1.4 ,OsNPR3, OsNH3, NPR3, NH3,OsYSL13, OsYs12 ,,OsNH2, OsNPR2, OsNPR2/NH2 ,OsVQ10, VQ10,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,,,OsbZIP28, OsbZIP1, OsNIF1, OsTGA3, TGA3, OsTGA3/OsbZIP08,,OsbZIP03, OsbZIP3, OsHBP1b, OsTGA5, TGA5, OsTGA5/OsbZIP3,AP2/EREBP#129, OsRAV2, RAV2,OsbZIP08, OsbZIP8, OsTGA2, TGA2, OsTGA2/OsbZIP28,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsPUB64, PUB64, OsHOP1, HOP1
46334	30486418	Chen Z., Chen T., Sathe A.P., He Y., Zhang X.B., Wu J.L.	Identification of a Novel Semi-Dominant Spotted-Leaf Mutant with Enhanced Resistance to <i>Xanthomonas</i><i>oryzae</i> pv. <i>oryzae</i> in Rice.	Int J Mol Sci	19(12)		2018	PR10A,_,_,MC3,_,_,MC2,MC8,CHT4,PR1B,MC5,JAR1,CHS,WRKY45,TIFY11A,_,MC1,AOS2,PR4,JAMYB,MC4,MC6,PR1A	PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsEDS1, EDS1,PAD4, OsPAD4,OsMC3, OsSTA102,OsPAL05, PAL05, OsPAL3, PAL5, PAL3,SPL24,OsMC2,OsMC8,Cht4(t)*(Chi4), Chi4, Cht4, OsChia2b, Chi-4, CHIT2, OsCHIT2, PR3, OsPR3,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsMC5,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsWRKY45,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsPAL07, OsPAL, PAL07, OsPAL6, PAL6, PAL1, OsPAL7, PAL7,OsMC1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsPR4, OsPR4a, PR4a, OsPR-4,OsJAmyb, JAmyb, OsJAMyb ,OsMC4,OsMC6,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 
46335	30478522	Zhou M., Tang W.	MicroRNA156 amplifies transcription factor-associated cold stress tolerance in plant cells.	Mol. Genet. Genomics	294(2)	379-393	2019		
46336	30339276	Huang X.Y., Liu H., Zhu Y.F., Pinson S.R.M., Lin H.X., Guerinot M.L., Zhao F.J., Salt D.E.	Natural variation in a molybdate transporter controls grain molybdenum concentration in rice.	New Phytol.	221(4)	1983-1997	2019	SULTR5;2	OsSultr5;2, OsSul5;2, Os-MOT1;1, OsMOT1;1, MOT1;1, qGMo8
46337	30414306	Wang T., Zou T., He Z., Yuan G., Luo T., Zhu J., Liang Y., Deng Q., Wang S., Zheng A., Liu H., Wang L., Li P., Li S.	GRAIN LENGTH AND AWN 1 negatively regulates grain size in rice.	J Integr Plant Biol			2018	GSN1,WRKY53,MAPK6	MKP1, OsMKP1, osmkp1, LARGE8, GLA1, OsGLA1,OsWRKY53, WRKY-53,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6
46338	30399648	Wang M., Qiao J., Yu C., Chen H., Sun C., Huang L., Li C., Geisler M., Qian Q., Jiang A., Qi Y.	The auxin influx carrier, OsAUX3, regulates rice root development and responses to aluminium stress.	Plant Cell Environ.	42(4)	1125-1138	2019	CDKC;3,_,CDKC;1,CYCB2;2,CYCU4;3,CYCD4;1,_	CDKC;3, Orysa;CDKC;3,CKL10, Orysa;CKL10, OsCKL:10, CKL:10,CDKC;1, Orysa;CDKC;1, Orysa;CDKC;2, CDKC;2, OsCDKC;2, OsCDKC2,cycB2;2 (=cycOs2), cycB2;2, cycOs2, CycB2;2, CycOs2, CYCB2-2, CYCOS2, CycB2-Os2, CYCB2, CycB2;os;2, OsCycB2;2, Orysa;CycB2;2, OsCYCOS2, Os;cycB2;2, CYCB2.2, OsCYCB2.2,CycU4;3, CycU4;os;3, Orysa;CycU4;3, OsCYCP4;1,CycD2;1, CYCD2-1, Orysa;CycD2;1, OsCYCD2;1, Orysa;CycD4;1, CycD4;1, CYCD4-1, Orysa;CYCD4;1, cycD, OsCYCD4;1,,OsLAX3, OsRAU3, OsAUX2, LAX3, RAU3, AUX2, OsAUX3, AUX3
46339	29936933	Byun M.Y., Cui L.H., Lee H., Kim W.T.	Telomere association of Oryza sativa Telomere repeat-binding factor like 1 and its roles in Telomere maintenance and development in rice, Oryza sativa L.	BMB Rep	51(11)	578-583	2018	TRFL1,RTBP1,TRBF1	OsTRFL1,rtbp1, TBP1, OsTBP1,OsTRBF1
46340	30537605	Kashihara K., Onohata T., Okamoto Y., Uji Y., Mochizuki S., Akimitsu K., Gomi K.	Overexpression of OsNINJA1 negatively affects a part of OsMYC2-mediated abiotic and biotic responses in rice.	J. Plant Physiol.	232	180-187	2019	_,_,_,TIFY11C,STR5,_,EG2,TIFY11D,_,TIFY10C,_,GSTF14,NAC10,POXGX9,_,_,_,_,_,TIFY11B,GH9B1,TIFY11A,TIFY10A,_,TIFY6A,TIFY11E,TIFY10B,TIFY5,TIFY6B,TIFY9	OsNINJA1, NINJA1, OsNINJA2, OsNINJA, NINJA,,Gns7, OsGns7,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsStr5, OsHAC1;1, HAC1;1 ,,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12,prx97, Osprx97,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,,OsGSTF14, GST14,ONAC010, ONAC10, OsSTA199,POXgX9, OsPOXgX9, prx112,,,Sci1, PR6, OsSci1, OsPR6,OsbHLH009, bHLH009, OsMYC2, MYC2,OsLTP2.9, OsLtpII.9, LTP2.9, LtpII.9,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,OsGH9B1,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsJAZ5, JAZ5, JAZ6, OsJAZ6, OsTIFY10A,,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsJAZ 13, OsJAZ13,JAZ13, OsTIFY11e,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsJAZ 2, OsJAZ2, JAZ2, OsTIFY5, OsSTA188,OsJAZ8, OsJAZ 4, OsJAZ4, OsTIFY6b,OsJAZ11, OsJAZ5, OsTIFY9, JAZ11, JAZ11/TIFY9 
46341	30452736	Wu M., Cai R., Liu H., Li F., Zhao Y., Xiang Y.	A moso bamboo drought-induced 19 protein, PeDi19-4, enhanced drought and salt tolerance in plants via the ABA-dependent signaling pathway.	Plant Cell Physiol.			2018		
46342	30497403	Wei K., Chen H.	Comparative functional genomics analysis of bHLH gene family in rice, maize and wheat.	BMC Plant Biol.	18(1)	309	2018	_,_,_,_,ILI2,_,_,_,BU1,_,_,_,_,_,_,_,_,_,_,ILI5,_,PIL13,EAT1,_,PIL11,_,_,_,PIL12,_,_,_,_,_,PIL14,_,_,_,_,_,_,_,_,_,_,TDR,_	OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,OsbHLH185, bHLH185,OsbHLH120, bHLH120,OsbHLH176, bHLH176,ILI2, OsbHLH186, bHLH186,OsbHLH147, bHLH147,OsbHLH166, bHLH166,OsIRO2, IRO2, OsbHLH056, bHLH056, bHLH56, OsbHLH56,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsbHLH160, bHLH160, SIP19, OsSIP19,OsbHLH037, bHLH037,OsbHLH148, bHLH148,OsbHLH162, bHLH162,OsbHLH183, bHLH183,OsbHLH035, bHLH035, OsbHLH35, bHLH35,OsbHLH002, bHLH002, OsbHLH2, bHLH2, OsICE1, ICE1, OsbHLH002/OsICE1,OsbHLH091, bHLH091,OsbHLH180, bHLH180,OsbHLH187, bHLH187,ILI5, OsILI5, PGL2, OsPGL2, Os170, OsBUL1, BUL1, ILI5/PGL2, OsbHLH170, bHLH170,OsbHLH177, bHLH177,OsPIL1, OsPIL13, OsbHLH152, bHLH152, PIF7, OsPIF7,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsbHLH095, bHLH095,OsPIL11, OsbHLH102, bHLH102, PIF4, OsPIF4,OsbHLH001, bHLH001, OsbHLH1, bHLH1, OsICE2, ICE2,OsbHLH144, OsEnS-65, bHLH144, EnS-65, OsZOU-1, OsZOU1, ZOU-1, ZOU1,OsbHLH009, bHLH009, OsMYC2, MYC2,OsPIL12, OsbHLH103, bHLH103,OsbHLH047, bHLH047,OsbHLH181, bHLH181,OsbHLH168, bHLH168,Os IBH1, OsIBH1, IBH1, OsbHLH175, bHLH175,OsbHLH042, bHLH042,OsPIL14, OsbHLH104, OsPIF14, PIF14, OsPIF14alpha, OsPIF14beta,OsbHLH182, bHLH182,OsbHLH179, bHLH179,OsbHLH184, bHLH184,OsbHLH169, bHLH169,OsbHLH113, bHLH113,OsIRO3, IRO3, OsbHLH063, bHLH063, bHLH63,OsbHLH188, bHLH188,OsbHLH157, bHLH157,OsbHLH109, bHLH109,OsbHLH178, bHLH178,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1,OsbHLH171, bHLH171
46343	30530203	Pei W., Jain A., Ai H., Liu X., Feng B., Wang X., Sun Y., Xu G., Sun S.	OsSIZ2 regulates nitrogen homeostasis and some of the reproductive traits in rice.	J. Plant Physiol.	232	51-60	2019	AMT1;3,NRT2.3,SG1,SIZ2,NRT2.1,NAR2.1,SIZ1,AMT1;2,LK3	OsAMT1;3, AMT1-3, Osamt1-2, "OsAMT1,2", OsAMT1;2, OsAMT1.3, AMT1.2,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,OsSG1, Sg1,OsSIZ2,OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 ,OsAMT1;2, AMT1-2, Osamt1-3, "OsAMT1,3", OsAMT1;3, OsAMT1.3, OsAMT1.2, AMT1.2,lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
46344	30382816	Xu X., Chen Z., Shi Y.F., Wang H.M., He Y., Shi L., Chen T., Wu J.L., Zhang X.B.	Functional inactivation of OsGCNT induces enhanced disease resistance to Xanthomonas oryzae pv. oryzae in rice.	BMC Plant Biol.	18(1)	264	2018	_,_,_,WRKY45,WRKY23,_,LOX7,_,LOX1,POX3006,TIFY11A,RCCR1,_,PSBA,PAL,WRKY42,NDHA,WRKY89,PSAA,OPR1,_,PR10A,RBCL,_,PR1A,_,_,_,PETD,SALT,SL,_,PLS3,RBCS,WRKY72	Osh69,OsPAL04, PAL04, PAL, OsPAL7, PAL7,Osl2,OsWRKY45,OsWRKY23,OsHPPD, HPPD, Osl30, l30,OsLOX7,lhcA,OsLOX1, OsLOX5,POX3006, prx114, PO-C1, POC-1, POC1,OsJAZ3, JAZ3, OsJAZ 9, OsJAZ9, Os-JAZ9, JAZ9, OsTIFY11a, OsJAZ6, JAZ6,OsRCCR1, OsRCCR, RCCR,OsEDS1, EDS1,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,OsPAL, OsPAL08, PAL2, GP-28, GP28, PAL08, OsPAL2, OsPAL8, PAL8,OsWRKY42, WRKY-42,ndhA,OsWRKY89,PsaA, psaA, PsAA1,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsPAL02, PAL02, OsPAL5, PAL5, OsPAL2. PAL2,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,rbcL, rbcA, OsrbcL,atpA,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 ,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,Lhcb1.1 OsLhcb1.1, lhcB,Osh36, OsH36, H36, OsAMTR1, AMTR1,petD,salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,PAD4, OsPAD4,OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,OsWRKY72, WRKY-72
46345	30418086	Yamaguchi K., Yoshimura Y., Nakagawa S., Mezaki H., Yoshimura S., Kawasaki T.	OsDRE2 contributes to chitin-triggered response through its interaction with OsRLCK185.	Biosci. Biotechnol. Biochem.	83(2)	281-290	2019		
46346	30530202	Cheng R., Gong L., Li Z., Liang Y.K.	Rice BIG gene is required for seedling viability.	J. Plant Physiol.	232	39-50	2019	AOS1,RBCL,RBCS,CAB1R,YGL1,LOX8,V2,FGL,PSBA,OG1,BIG,_,PSAA,RPOA	OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,rbcL, rbcA, OsrbcL,rbcS, OsRbcS, RBCS-C, RbcS2, OsRBCS2, RbcS1, OsRbcS2, OsrbcS1,cab1R, LHCP, CAB, OsLhcb1, Lhcb1, Cab1, OsCAB1, Lhcb1b, OsLhcb1b,OsYGL1, CHLG, Ygl1, CS, OsCHLG,OsLOX8, OsLOX9, LOX9, OsLOX2;3, LOX2;3, OsLOX2,v2, mGmk, GMK, Gmk, pt/mtGK, pt/mt GK,fgl(fl), fl, fgl, OsPorB, PoPA, PORA, porA, PORB, OsPORB,PsbA, psbA, OsPsbA, PSBD1, OsPSBD1,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsBIG,FtsZ1, FtsZ, OsFtsZ1, OsFtsZ,PsaA, psaA, PsAA1,rope, rpoalpha, Rpoalpha, rope, RpoA 
46347	30441767	Nishiyama A., Matsuta S., Chaya G., Itoh T., Miura K., Iwasaki Y.	Identification of Heterotrimeric G Protein gamma3 Subunit in Rice Plasma Membrane.	Int J Mol Sci	19(11)		2018	LK3	lk3(t), lk3(t)*, SG3, GS3, SG3-GS3, OsGW3, OsGS3, RGG3/GS3/Mi/OsGGC1, RGG3, Mi, OsGGC1, GGC1
46348	30496185	Chen S.H., Zhou L.J., Xu P., Xue H.W.	SPOC domain-containing protein Leaf inclination3 interacts with LIP1 to regulate rice leaf inclination through auxin signaling.	PLoS Genet.	14(11)	e1007829	2018	IAA12,GH3-2,ARF17,LIP1,LC3	OsIAA12,OsGH3-2, OsGH3.2, GH3.2,OsARF17,OsLIP1,OsLC3
46349	30542157	Khanday I., Skinner D., Yang B., Mercier R., Sundaresan V.	A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds.	Nature	565(7737)	91-95	2019	PLT6,PLT3,PLT4,PLT5	OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1,OsPLT3, AP2/EREBP#018, AP2/EREBP18, BBM2, OsBBM2,OsPLT4, AP2/EREBP#037, AP2/EREBP37, BBM4, OsBBM4,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1
46350	30559185		Correction for Kritee et al., Reply to Yan and Akiyama: Nitrous oxide emissions from rice and their mitigation potential depend on the nature of intermittent flooding.	Proc. Natl. Acad. Sci. U.S.A.	115(52)	E12463	2018		
46351	30538156	Zhao T., Ren L., Chen X., Yu H., Liu C., Shen Y., Shi W., Tang D., Du G., Li Y., Ma B., Cheng Z.	The OsRR24/LEPTO1 Type-B Response Regulator is Essential for the Organization of Leptotene Chromosomes in Rice Meiosis.	Plant Cell	30(12)	3024-3037	2018	CYCA1;1,EAT1,AHP2,RR24,AP37 ,CP1,_,AHP1,SDS,CYCB1;4,TDR	CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OHP2, HPt, OsAHP2 Hpt3, Ohp2, OsHP1, OsHpt3,OsRR24, Rrb2, Orr4, OsRR17, OsRRB2, OsRR24/LEPTO1, OsLEPTO1, LEPTO1,OsAP37,OsCP1, Os CP1,OsAP25, Radc1, AP25,OHP1, HPt, OsAHP1, Hpt2, Ohp1, OsHP2, OsHpt2, OsHPt2,OsSDS, Orysa;SDS,OsCycB1;4, Orysa;CycB1;4, CYCB1-3, OsCYCB1-3,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1
46352	30538152	Ni L., Fu X., Zhang H., Li X., Cai X., Zhang P., Liu L., Wang Q., Sun M., Wang Q.W., Zhang A., Zhang Z., Jiang M.	Abscisic Acid Inhibits Rice Protein Phosphatase PP45 via H2O2 and Relieves Repression of the Ca2+/CaM-Dependent Protein Kinase DMI3.	Plant Cell	31(1)	128-152	2019	MAPK6,RBOHE,BIPP2C1,RBOHB,DMI3	OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,rbohE, OsrbohE, Os rbohE, OsRbohE, OsNox3, Nox3,OsBIPP2C1, OsPP45, PP45,rbohB, OsrbohB, Os rbohB, OsRbohB, OsNox1, Nox1, Os-RbohB, RbohB ,OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK
46353	30590260	Tezuka D., Kawamata A., Kato H., Saburi W., Mori H., Imai R.	The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae.	Plant Physiol. Biochem.	135	263-271	2019		
46354	30567970	Chang M.X., Gu M., Xia Y.W., Dai X.L., Dai C.R., Zhang J., Wang S.C., Qu H.Y., Yamaji N., Feng Ma J., Xu G.H.	OsPHT1;3 Mediates Uptake, Translocation, and Remobilization of Phosphate under Extremely Low Phosphate Regimes.	Plant Physiol.	179(2)	656-670	2019	PT3,PHR2,PT2	OsPT3, PHT1-3, OsPht1;3, OjPT1, PHT1;3,OsPHR2, Os-PHR2,OsPT2, PTH1-2, OsPht1;2, PHT1;2
46355	30568669	Cui L.H., Min H.J., Byun M.Y., Oh H.G., Kim W.T.	OsDIRP1, a Putative RING E3 Ligase, Plays an Opposite Role in Drought and Cold Stress Responses as a Negative and Positive Factor, Respectively, in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1797	2018	DIRP1	OsDIRP1
46356	30329110	Yang J., Xie M.Y., Wang L., Yang Z.L., Tian Z.H., Wang Z.Y., Xu J.M., Liu B.H., Deng L.W., Mao C.Z., Lin H.H.	A Phosphate-Starvation Induced RING-Type E3 ligase Maintains Phosphate Homeostasis Partially Through OsSPX2 in Rice.	Plant Cell Physiol.	59(12)	2564-2575	2018		
46357	30028233	Boonpa K., Tantong S., Weerawanich K., Panpetch P., Pringsulaka O., Roytrakul S., Sirikantaramas S.	In Silico Analyses of Rice Thionin Genes and the Antimicrobial Activity of OsTHION15 Against Phytopathogens.	Phytopathology	109(1)	27-35	2019		
46358	30824005	John Lilly J., Subramanian B.	Gene network mediated by WRKY13 to regulate resistance against sheath infecting fungi in rice (Oryza sativa L.).	Plant Sci.	280	269-282	2019		
46359	30733775	Prasetyo F.H.H., Sugiharto B., Ermawati N.	Cloning, transformation and expression of cell cycle-associated protein kinase <i>OsWee1</i> in indica rice (<i>Oryza sativa L.</i>).	J Genet Eng Biotechnol	16(2)	573-579	2018	_	OsWee1, Wee1 
46360	30551584	Nanda S., Wan P.J., Yuan S.Y., Lai F.X., Wang W.X., Fu Q.	Differential Responses of <i>OsMPK</i>s in IR56 Rice to Two BPH Populations of Different Virulence Levels.	Int J Mol Sci	19(12)		2018	_,LOX1,AOS2,_,MSRMK2,_,MPK6,CHS,MPK9,MAPK6,RLCK135,_,_,BWMK1,ERF3,MAPK4,PAL1,GSTF5,_,NH1,MPK7,EIN2,_,RLCK136,_,ACS2,AOS1,_	SOD, OsSOD-Cu/Zn, SOD-Cu/Zn,OsLOX1,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsMPK14, MPK14,OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,C4H2, OsC4H, OsC4HL, C4H,OsMPK6, OsDR6, OsMPK4,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsMPK9,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsRLCK135, OsLecRK3, LecRK3,OsEDS1, EDS1,gh1, GH1, OsCHI, Cfi, CHI,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,Os02ERF, OsSHN1, OsWR1, WR1, OsERF#003, OsERF003, OsERF3, AP2/EREBP#012, AP2/EREBP12,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,OsGSTF5, OsGST F5,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAP3, MPK14, MPK3,OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2,OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5,OsEIN2, MHZ7/OsEIN2, OsEIN2/MHZ7, MHZ7 ,OsMPK20-4, OsWJUMK, WJUMK, OsWJUMK1, WJUMK1, MAPK8, OsMPK8, MPK8,OsRLCK136, OsLecRK4, LecRK4,OsMPK13, OsMAPK2, OsBIMK2, BIMK2, MPK13, MAPK2, ,OsACS2, Os-ACS2,OsAOS, OsAOS1, CYP74A1, OsAOS2, AOS2,OsMPK16, MPK16
46361	30545904	Moon S., Cho L.H., Kim Y.J., Gho Y.S., Jeong H.Y., Hong W.J., Lee C., Park H., Jwa N.S., Dangol S., Chen Y., Park H., Cho H.S., An G., Jung K.H.	RSL Class II Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate root hair Development.	Plant Physiol.	179(2)	558-568	2019	_,RHL1,_,_,_,_,_,_,_,_,_,_,_	OsbHLH131, bHLH131, OsRSL5, RSL5,OsbHLH115, OsRHL1,OsbHLH128, bHLH128, OsRSL6, RSL6,OsbHLH130, bHLH130, OsRSL9, RSL9,OsbHLH134, bHLH134,prx43, OsPRX43,OsbHLH132, bHLH132, OsRSL7, RSL7,,,prx95, OsPRX95,prx105, OsPRX105,,OsbHLH129, bHLH129, OsRSL4, RSL4
46362	30194869	Tanaka N., Uraguchi S., Kajikawa M., Saito A., Ohmori Y., Fujiwara T.	A rice PHD-finger protein OsTITANIA, is a growth regulator that functions through elevating expression of transporter genes for multiple metals.	Plant J.	96(5)	997-1006	2018	_,LC5,NRAMP1,IRT1,NRAMP5,ZIP1,IRT2	OsZIP9, ZIP9,OsLC5, OsTTA, TTA,OsNramp1, OsNRAMP1, OsNramp6,OsIRT1,OsNRAMP5, OsNramp5,OsZIP1,OsIRT2, OsIRT1
46363	30471121	Liu X., Wang J., Yu Y., Kong L., Liu Y., Liu Z., Li H., Wei P., Liu M., Zhou H., Bu Q., Fang J.	Identification and characterization of the rice pre-harvest sprouting mutants involved in molybdenum cofactor biosynthesis.	New Phytol.	222(1)	275-285	2019	CNX6,XDH1,_,_,_,_,CNX1,_	OsCNX6,OsXDH1,OsNIA2, NIA2, OsNR2, NR2,AO, OsAO2, AO2,OsMCP, MCP, OsSO1, SO1,OsNR1, NR1, nia1, OsNIA1, NIA1,OsCNX1,AAO3, OsAAO3, OsAO1, AO1
46364	30541427	Rosa M.T.G., Almeida D.M., Pires I.S., da Rosa Farias D., Martins A.G., da Maia LC., de Oliveira AC., Saibo N.J.M., Oliveira M.M., Abreu I.A.	Insights into the transcriptional and post-transcriptional regulation of the rice SUMOylation machinery and into the role of two rice SUMO proteases.	BMC Plant Biol.	18(1)	349	2018	SIZ2,HPY2,SUMO3,OTS3,_,ELS1,SIZ1,FUG1,_,SUMO1,SPF1,SAE1,UBC3,ELS2,SUMO2,SAE2	OsSIZ2,OsHPY2, OsHPY2.1, OsHPY2.2,OsSUMO3,OsOTS3,OsSce1, OsUBC1, UBC1, OsSCE1b, SCE1b, OsSCE1b.1, OsSCE1b.2,OsELS1,OsSIZ1, OsSIZ1.1, OsSIZ1.2, OsSIZ1.3 ,OsFUG1,OsSce2, Sce2, OsUBC2, UBC2, OsSCE1a, SCE1a, OsSCE1a.1, OsSCE1a.2,smt3, SMT3, OsSUMO1,OsSPF1, OsSPF1.1, OsSPF1.2,OsSAE1, OsSAE1.1, OsSAE1.2, OsSAE1.3,OsUBC3, OsSCE1c, SCE1c, OsSCE1c.1, OsSCE1c.2,OsELS2,OsSUMO2,OsSAE2, OsSAE2.1, OsSAE2.2, OsSAE2.3
46365	30619427	Um T.Y., Lee H.Y., Lee S., Chang S.H., Chung P.J., Oh K.B., Kim J.K., Jang G., Choi Y.D.	JASMONATE ZIM-DOMAIN PROTEIN 9 Interacts With Slender Rice 1 to Mediate the Antagonistic Interaction Between Jasmonic and Gibberellic Acid Signals in Rice.	Front Plant Sci	9	1866	2018		
46366	30390051	Song S., Chen Y., Liu L., See Y.H.B., Mao C., Gan Y., Yu H.	Author Correction: OsFTIP7 determines auxin-mediated anther dehiscence in rice.	Nat Plants	4(12)	1124	2018		
46367	30578468	Ohashi M., Ishiyama K., Kusano M., Fukushima A., Kojima S., Hayakawa T., Yamaya T.	Reduction in sucrose contents by downregulation of fructose-1,6-bisphosphatase 2 causes tiller outgrowth cessation in rice mutants lacking glutamine synthetase1;2.	Rice (N Y)	11(1)	65	2018	GLN1;2,CFBP2	OsGLN1;2, GSr, RGS8, OsGS1;2, GS1;2, GS1, OsGS1-2, GS1-2, OsGS1.2, GS1.2,OscFBP2, cFBP2
46368	30558382	Tong X., Wang Y., Sun A., Bello B.K., Ni S., Zhang J.	<b>Notched Belly Grain 4, a Novel Allele of Dwarf 11, Regulates grain shape and Seed Germination in Rice (Oryza sativa L.)</b>.	Int J Mol Sci	19(12)		2018	YUCCA1,BRD1,_,D11,_	OsYUCCA1, OsYUC1,brd1, OsDWARF, DWARF, OsBR6ox, BR6ox, CYP85A1, CYP85A4, OsDWF, CYP85A1/OsDWARF, OsBRD1, OsCYP85A1,SPED1, OsSPED1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11,OsRab11F1, OsPRA2, PRA2, OsPra2 
46369	30375064	Takeda Y., Suzuki S., Tobimatsu Y., Osakabe K., Osakabe Y., Ragamustari S.K., Sakamoto M., Umezawa T.	Lignin characterization of rice coniferaldehyde 5-hydroxylase loss-of-function mutants generated with the CRISPR/Cas9 system.	Plant J.	97(3)	543-554	2019	_	OsF5H1, F5H1, OsCAld5H1, CAld5H1, CYP84A5, OsCYP84A5
46370	30545137	Sun L., Xiang X., Yang Z., Yu P., Wen X., Wang H., Abbas A., Muhammad Khan R., Zhang Y., Cheng S., Cao L.	<i>OsGPAT3</i> Plays a Critical Role in anther wall Programmed Cell Death and pollen Development in Rice.	Int J Mol Sci	19(12)		2018	DPW2,GPAT3,GAMYB,MTR1,DEX1,ABCG15,WDA1,EAT1,MADS24,_,CYP703A3,CP1,CYP704B2,AP37 ,PSBS1,NP1 ,_,BZIP74,OSC6,_,_,_,MSP1,RAG,_,TDR	OsDPW2,OsGPAT3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,OsMTR1,Os DEX1, OsDEX1,OsABCG15, PDA, PDA1, OsABCG15/PDA1,OsWDA1, Wda1, wda1, OS-CER1, OsGL1-5,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsMADS24, MADS8, OsMADS8, OsMADS8/24 ,GPAT, OsGPAT,OsCYP703A3,OsCP1, Os CP1,OsCYP704B2,OsAP37,OsPsbS1, PsbS1, psbS,OS-ACE, OsNP1 ,OsACS9, ACS9, 4CL4, OsACOS12, ACOS12 ,OsbZIP74, OsTGA10, TGA10 ,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6,GPAT, OsGPAT,OsMS2, MS2, OsDPW, DPW, DPW1,OsbHLH142, bHLH142, TIP2, OsTIP2,Msp1, OsMSP1,MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1,OsAP25, Radc1, AP25,tdr, OsbHLH005, bHLH005, OsbHLH5, bhlh5, TDR1, OsTDR, OsTDR1
46371	30565430	Zhang Z., Zhao H., Li W., Wu J., Zhou Z., Zhou F., Chen H., Lin Y.	Genome-wide association study of callus induction variation to explore the callus formation mechanism of rice.	J Integr Plant Biol			2018	CRL1,PLT5,_,IAA10	crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1,OsPLT5, AP2/EREBP5, AP2/EREBP#005, BBM3, OsBBM3, BBM1, OsBBM1,,OsIAA10, OsIAA5
46372	30124364	Zhang D., Tian C., Yin K., Wang W., Qiu J.L.	Postinvasive Bacterial Resistance Conferred by Open Stomata in Rice.	Mol. Plant Microbe Interact.	32(2)	255-266	2019		
46373	30578854	Ma S., Tang N., Li X., Xie Y., Xiang D., Fu J., Shen J., Yang J., Tu H., Li X., Hu H., Xiong L.	Reversible Histone H2B Monoubiquitination Fine-Tunes Abscisic Acid Signaling and Drought Response in Rice.	Mol Plant	12(2)	263-277	2019		
46374	30518322	Yuenyong W., Chinpongpanich A., Comai L., Chadchawan S., Buaboocha T.	Downstream components of the calmodulin signaling pathway in the rice salt stress response revealed by transcriptome profiling and target identification.	BMC Plant Biol.	18(1)	335	2018	_,_,_,_,OPR5,_,_,_,GPT2,SSIIB,_,LAC8,ITPK4,_,_,LAC29,_,ACX4,NIN2,_,BWMK1,IDH,_,CNGC12,WRKY62,_,SSIVA,CIN1,LOX1,_,_,RSUS4,HCT2,WRKY71,_,_,_,_,_,_,LOX12,AGPS2,_,MS,_,WRKY53,PRR95,_,ITPK1,_,_,_,LAC7,_,NCED3,OPR10,DREB1B,NIN6,OPR1,DREB1A,WRKY13,_,_,_	DIP3, XIP, OsHI-XIP, OsXIP2, XIP2,OsHPPD, HPPD, Osl30, l30,,OsPGL35, PGL35,OsOPR5, OsOPR6, OsOPR06-2,FBP,,,OsGPT2,OsSSIIb, OsSSII-2, SSII-2, SS2, OsSSSIIb, SS2b,BIP134, OsBIP134,OsLAC8, OsLAC7, LAC7,OsITPK4, OsITP5/6K-4, ITP5/6K-4,,GDCi, OsGDCi,OsLAC29,OsMYB48, MYB48, OsMYB48-1, OsMYB48-2, OsMYB59, MYB59,OsACX4,OsNIN2, CytINV, OsCytINV,,OsBWMK1, MPK12, MAPK1, OsMAPK1, OsMPK12, OsMPK17-1, OsBWMK1L, OsBWMK1M, OsBWMK1S,OsIDH,OsMS2, MS2, OsDPW, DPW, DPW1,OsCNGC12, OsCNGC2 ,OsWRKY62, OsWRKY62.1, OsWRKY62.2, XB10,OsDAD1;3, DAD1;3,OsSSIVa, SSIV-1, OsSSIV-1,OSCIN1, OsCIN1,OsLOX1, OsLOX5,OsUSP, USP,Lox2:Os:1, OsLOX9, OsLOX8, OsLOX2, LOX2, OsRLL, OsHI-LOX, HI-LOX, RLL2 LOX, RLL2, Lox2osPil, OsLOX2;1, LOX2;1,SUS4, SS4, OsScS4, RSs4, RSus4, OsSUS4,OsHCT2, HCT,OsWRKY71, WRKY-71,AO, OsAO, AAO, OsAAO,OsACO1, ACO1,OsCaM1, OsCam1-1, OsCaM1-1, CAM3, Cam1-1,OsBIDK1, BIDK1,KCS,OsPPi-PFK, OsPFK04, PFK04, PFK4,OsLOX12,OsAGPS2a, AGPS2A, AGPS2B, OsAGPS2, osagps2, APS2, APS2a, APS2b, AGPS2a, APGS2b, OsAGPS2b, AGPP, GAS8, OsAPS2, OsAPS2a, OsAPS2b,,MLS, OsMLS, OsMS,,OsWRKY53, WRKY-53,OsPRR95, Os-PRR95, Prr2, OsPRR2, OsCCT33,,OsITPK1, OsITP5/6K-1, ITP5/6K-1, OsITL2,KCS,,OsEnS-107, EnS-107, OsI85, I85, ICL, OsICL, Osl85, l43, Osl43, OsL85,OsLAC7,OsKCBP, KCBP,OSNCED3, OsNCED-3, OsNCED3, OsNCED4, NCED4, OsNECD2,OsOPR10, OsOPR12, OsOPR01-1,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsNIN6,OsOPR1, OsOPR2, OsOPR11, OsOPR06-6, OPDAR1, OsOPR, OPDAR,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsWRKY13,OsCHS, FAE, OsFAE1,,OsRD22, RD22, OsBURP16, BURP16
46375	30619400	Kim S.R., Torollo G., Yoon M.R., Kwak J., Lee C.K., Prahalada G.D., Choi I.R., Yeo U.S., Jeong O.Y., Jena K.K., Lee J.S.	Loss-of-Function Alleles of <i>Heading date 1</i> (<i>Hd1</i>) Are Associated With Adaptation of Temperate <i>Japonica</i> Rice Plants to the Tropical Region.	Front Plant Sci	9	1827	2018		
46376	30536744	Fang C., Li K., Wu Y., Wang D., Zhou J., Liu X., Li Y., Jin C., Liu X., Mur L.A.J., Luo J.	OsTSD2-mediated cell wall modification affects ion homeostasis and salt tolerance.	Plant Cell Environ.	42(5)	1503-1512	2019	KAT1,TSD2 ,HKT4,HAK10,HKT8,SOS1,NHX1,HKT1	OsKAT1,OsTSD2, OsQUA2, QUA2 ,OsHKT4, OsHKT1;1, HKT1;1, OsHKT2, RNC4,OsHAK10,OsHKT8, Os-HKT1;5, OsHKT1;5, HKT1;5, SKC1, qSKC-1(t), OsSKC1,OsSOS1, OsNHA1,OsNHX1,OsHKT1, OsHKT2;1, HKT2;1, Ni (Nipponbare)-OsHKT1, Po (Pokkali)-HKT1, OsHKT1;1
46377	30544581	Boonchai C., Udomchalothorn T., Sripinyowanich S., Comai L., Buaboocha T., Chadchawan S.	Rice Overexpressing <i>OsNUC1-S</i> Reveals Differential Gene Expression Leading to Yield Loss Reduction after Salt Stress at the Booting Stage.	Int J Mol Sci	19(12)		2018	_,_,NUC1,_	PSAO,CEST,OsNUC1, OsNUC1-S, OsNUC1-L,LHCB, LHCP II, Lhcb2, OsLhcb2, Lhcb2.1, OsLhcb2.1 
46378	30572766	Sakamoto T., Kitano H., Fujioka S.	ERECT LEAF1 suppresses jasmonic acid response in rice by decreasing OsWRKY4 stability.	Plant Signal Behav	14(2)	1559578	2019		
46379	30696765	Acevedo L.A., Kwon J., Nicholson L.K.	Quantification of reaction cycle parameters for an essential molecular switch in an auxin-responsive transcription circuit in rice.	Proc. Natl. Acad. Sci. U.S.A.	116(7)	2589-2594	2019	LRT2,IAA11	CYC2, cyc2*, cyc2, OsCYP2, Cyp2, OsCYP19-2, CYP19-2, OsCYP-2, OsCyp2-P, OsCyp2, OsCYP19-1, LRT2/OsCYP2, lrt2*, lrt2, Ppcti ,OsIAA11
46380	30670638	Wassmann R., Sander B.O., Yadav S., Bouman B., Singleton G., Stuart A., Hellin J., Johnson D., Hughes J., Butterbach-Bahl K., Kiese R., Kraus D., Janz B., Linquist B., Gaihre Y.K., Chirinda N., Wollenberg E.	New records of very high nitrous oxide fluxes from rice cannot be generalized for water management and climate impacts.	Proc. Natl. Acad. Sci. U.S.A.	116(5)	1464-1465	2019		
46381	30606778	Caseys C.	Ferroptosis: A Companion of ROS in Fighting <i>Magnaporthe</i> in Rice.	Plant Cell	31(1)	13-14	2019		
46382	30705136	Marand A.P., Zhao H., Zhang W., Zeng Z., Fang C., Jiang J.	Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice.	Plant Cell	31(3)	645-662	2019		
46383	30610168	Yang C., Yu Y., Huang J., Meng F., Pang J., Zhao Q., Islam M.A., Xu N., Tian Y., Liu J.	Binding of the <i>Magnaporthe oryzae</i> Chitinase MoChia1 by a Rice Tetratricopeptide Repeat Protein Allows Free Chitin to Trigger Immune Responses.	Plant Cell	31(1)	172-188	2019	TPR1,JIOSPR10,RBOHA	OsTPR1,JIOsPR10, OsPR10, PR10 ,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2
46384	30626621	Jiang L., Ma X., Zhao S., Tang Y., Liu F., Gu P., Fu Y., Zhu Z., Cai H., Sun C., Tan L.	The APETALA2-like transcription factor SUPERNUMERARY BRACT Controls Rice Seed Shattering and Seed Size.	Plant Cell	31(1)	17-36	2019	SNB,qSH1,SH5	AP2/EREBP#073, AP2/EREBP73, AP2-3, SSH1, OsSSH1, OsSNB,qSH1, qsh1, qSH-1,
46385	30651345	Liu J., Nannas N.J., Fu F.F., Shi J., Aspinwall B., Parrott W.A., Dawe R.K.	Genome-Scale Sequence Disruption Following Biolistic Transformation in Rice and Maize.	Plant Cell	31(2)	368-383	2019		
46386	30312463	Sousa R.H.V., Carvalho F.E.L., Lima-Melo Y., Alencar VTCB., Daloso D.M., Margis-Pinheiro M., Komatsu S., Silveira J.A.G.	Impairment of peroxisomal APX and CAT activities increases protection of photosynthesis under oxidative stress.	J. Exp. Bot.	70(2)	627-639	2019	_,APX4,GS2,_,ABC1,GDCP	OsSHM1, SHM1, OsSHMT1, SHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3,OsAPx4, OsAPx04, OSAPX4, APx4, pAPX4,OsGS2, GLN2, RGS31,OsLFNR1, LFNR1, LFNR2, Os-LFNR2, OsLFNR2, FNR,OsABC1, SPL32, OsGLU, OsFd-GOGAT, Fd-GOGAT, ABC1/ OsFd-GOGAT ,OsGDCP
46387	30582769	Ruan B., Hua Z., Zhao J., Zhang B., Ren D., Liu C., Yang S., Zhang A., Jiang H., Yu H., Hu J., Zhu L., Chen G., Shen L., Dong G., Zhang G., Zeng D., Guo L., Qian Q., Gao Z.	OsACL-A2 negatively regulates cell death and disease resistance in rice.	Plant Biotechnol. J.	17(7)	1344-1356	2019	ACLA3,ACLA1,SL,ACLA2	OsACL-A3, ACL-A3,OsACL-A1, ACL-A1,OsSL, sl (spl1), sl*, sl, spl1, CYP71P1, Os CYP71P1, T5H, OsT5H, CYP71A1, OsCYP71A1, OsLLM1, LLM1, LLM1/OsSL,SPL30, OsACL-A2, ACL-A2
46388	30763346	Das A., Pramanik K., Sharma R., Gantait S., Banerjee J.	In-silico study of biotic and abiotic stress-related transcription factor binding sites in the promoter regions of rice germin-like protein genes.	PLoS ONE	14(2)	e0211887	2019	GLP3-2,GLP3-8,_,GLP4-1,GLP1,OXO4,GLP9-2,OXO1,GLP8-13,OXO3,GLP8-4,GLP8-12,GLP2-3,GLP12-1,GLP8-6,GLP8-5,GLP3-1,GLP8-10,GLP9-1,GLP2-2,_,GLP12-4,GLP12-2,GLP9-3,GLP2-4,GLP5-2,_,GLP8-8,GLP8-7,GLP12-3,GLP8-3,GLP1-5,GLP8-2,GLP1-3,GLP8-1,GLP2-1,OXO2,GLP11-1,GLP8-11,GLP8-9	OsGLP3-2,OsGLP3-8,GER7, OsGLP3-7, GLP3-7,OsGLP4-1,OsGLP1, GER1, GER5, GLP110, OsGER1, OsGER5, OsGLP8-14, GLP8-14,OsOxO4, OsGLP3-6, GLP3-6,OsGLP9-2,OsOxO1, OsGLP3-3, GLP3-3,OsGLP8-13,OsOxO3, OsGLP3-5, GLP3-5,OsGLP8-4, GER1. OsGer1,OsGLP8-12,OsGLP2-3,OsGLP12-1,OsGLP8-6,OsGLP8-5,OsGLP3-1,OsGLP8-10, OsRGLP2, RGLP2,OsGLP9-1,OsGLP2-2,GER4, OsGLP1-2, GLP1-2, OsGLP1-1, GLP1-1,OsGLP12-4,OsGLP12-2,OsGLP9-3,OsGLP2-4, OsGLP2-1, GLP2-1,OsGLP5-2, OsGLP5-1, GLP5-1,GER8, OsGLP1-4, GLP1-4, OsGLP1-3, GLP1-3,OsGLP8-8,OsGLP8-7, GER6, OsRGLP2, RGLP2,OsGLP12-3,OsGLP8-3, GER2,OsGLP1-5, OsGLP1-4, GLP1-4,OsGLP8-2, GER3, OsGER3, GLP16, OsEnS-117,OsGLP1-3, OsGLP1-2, GLP1-2,OsGLP8-1,OsGLP2-1,Osoxo4, OsOxO2, OsGLP3-4, GLP3-4,OsGLP11-1,OsGLP8-11, RGLP1, OsRGLP1,OsGLP8-9
46389	31181089	de Freitas GM., Thomas J., Liyanage R., Lay J.O., Basu S., Ramegowda V., do Amaral MN., Benitez L.C., Bolacel Braga EJ., Pereira A.	cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes.	PLoS ONE	14(6)	e0218019	2019	TPP1,_,OCPI2,ZFP245,GH3-2,SAP8,NAC58,_,ACA6	OsTPP1, OsTPS,OsMed16_1, Med16_1, OsSFR6, SFR6,OsSRO1a, SRO1a,OsZFP245,OsGH3-2, OsGH3.2, GH3.2,Osi-SAP8, OsiSAP8, OsSAP8, OsSAP1, SAP1,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1,OsRD22, RD22, OsBURP16, BURP16,osACA6, OsACA1, OsACA6, OsPM1ATPaseII
46390	30815002	Andrade L.M., Peixoto-Junior RF., Ribeiro R.V., N?bile PM., Brito M.S., Marchiori P.E.R., Carlin S.D., Martins A.P.B., Goldman M.H.S., Llerena J.P.P., Fregonesi C., Perecin D., Neb? JFCO., Figueira A., Benatti T.R., da Silva J., Mazzafera P., Creste S.	Biomass Accumulation and Cell Wall Structure of Rice Plants Overexpressing a Dirigent-Jacalin of Sugarcane (<i>ShDJ</i>) Under Varying Conditions of Water Availability.	Front Plant Sci	10	65	2019	P5CS,GRAS23,LEA3-1,NAC29,BZIP23,_	OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsGRAS23, OsGRAS-23, GRAS-23,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,ONAC029, ONAC29, OsSWN2, OsSWN2L, OsSWN2S, OsNST1/2, SWN2, SWN2L, SWN2S, NST1/2 ,OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,OsMYB58/63, OsMYB58, OsMYB63, MYB58/63, MYB58, MYB63
46391	30941150	Mishra P., Jain A., Takabe T., Tanaka Y., Negi M., Singh N., Jain N., Mishra V., Maniraj R., Krishnamurthy S.L., Sreevathsa R., Singh N.K., Rai V.	Heterologous Expression of Serine Hydroxymethyltransferase-3 From Rice Confers Tolerance to Salinity Stress in <i>E. coli</i> and Arabidopsis.	Front Plant Sci	10	217	2019	_,_,_,_,_	OsSHM1, SHM1, OsSHMT1, SHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3,OsSHM5, SHM5, OsSHMT5, SHMT5, OsSHTM2, SHTM2,OsSHM2, SHM2, OsSHMT2, SHMT2, OsSHTM4, SHTM4,OsSHM3, SHM3, OsSHMT3, SHMT3, OsSHTM5, SHTM5,OsSHM4, SHM4, OsSHMT4, SHMT4, OsSHTM1, SHTM1
46392	30499169	Hui S., Shi Y., Tian J., Wang L., Li Y., Wang S., Yuan M.	TALE-carrying bacterial pathogens trap host nuclear import receptors for facilitation of infection of rice.	Mol. Plant Pathol.	20(4)	519-532	2019	SULTR3;6,TFX1,IMPA1B,XA13,_,IMPA1A	OsSultr3;6, OsSul3;6, OsSULTR3;6 ,OsbZIP73, bZIP73, OsTFX1,Imp3, OsImpalpha1b, Impalpha1b,xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsTFIIAgamma1, OsTFIIAc-1, TFIIAc-1, TFIIAgamma-1,rImpa1a, Impa1a, Osimpa1, Osimpalpha1, OsImpalpha1a, Impalpha1a
46393	30660943	Lu J., He J., Zhou X., Zhong J., Li J., Liang Y.K.	Homologous genes of epidermal patterning factor regulate stomatal development in rice.	J. Plant Physiol.	234-235	18-27			
46394	30617050	Cao W.L., Yu Y., Li M.Y., Luo J., Wang R.S., Tang H.J., Huang J., Wang J.F., Zhang H.S., Bao Y.M.	OsSYP121 Accumulates at Fungal Penetration Sites and Mediates Host Resistance to Rice Blast.	Plant Physiol.	179(4)	1330-1342	2019	VAMP722,SYP132,_,VAMP714,MYB20,SYP125,_,WRKY21,_,SYP121,SYP124,RBOHF,VAMP724,SYP131,VAMP7111,VAMP721,VAMP727	OsVAMP722,OsSYP132,OsPILS7a, PILS7a,OsVAMP714,OsMYB20,OsSYP125,KN, OsKN, OsSYP111, SYP111,OsWRKY21,OsSNAP32, SNAP32,OsSYP121,OsSYP124,RbohF, rbohF, OsrbohF, Os rbohF, OsNox6, Nox6, OsrbohE, rbohE,OsVAMP724,OsSYP131,OsVAMP7111,OsVAMP721,OsVAMP727
46395	30652247	Liao P.F., Ouyang J.X., Zhang J.J., Yang L., Wang X., Peng X.J., Wang D., Zhu Y.L., Li S.B.	OsDCL3b affects grain yield and quality in rice.	Plant Mol. Biol.	99(3)	193-204	2019	FLO13,_,CYP704B2,_,_,LAP6,_,_,_,_,_,_,_,MIR397B,GSL10,_,_,MIR397A,_,_,DCL3B,PGLCT	OsNDUFA9, NDUFA9 ,,OsCYP704B2,,,OsPKS1, PKS1, YY2, OsPKS21, PKS21, OsLAP6/OsPKS1, OsLAP6,OsSHM1, SHM1, OsSHMT1, SHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3,,OsMS2, MS2, OsDPW, DPW, DPW1,OsNADPH1, NADPH1,,,,miR397b, osa-miR397b, osa-MIR397b, miR397b*, OsmiR397b, Os-MIR397b,OsGSL10,,,miR397a, osa-miR397a, osa-MIR397a, OsmiR397a,,OsLTP1.1, T42, OsLtp1.1, LTP1.1,OsDCL3b,OsPGLCT
46396	30764706	Na Y.J., Choi H.K., Park M.Y., Choi S.W., Xuan Vo KT., Jeon J.S., Kim S.Y.	OsMAPKKK63 is involved in salt stress response and seed dormancy control.	Plant Signal Behav	14(3)	e1578633	2019		
46397	30783573	Fang M., Zhou Z., Zhou X., Yang H., Li M., Li H.	Overexpression of <i>OsFTL10</i> induces early flowering and improves drought tolerance in <i>Oryza sativa</i> L.	PeerJ	7	e6422	2019	BZIP23,FTL1,GF14D,DREB2A,GF14B,_,GF14A,HD3A,GID2,MADS51,RFT1,FTL10,EF1,GF14C,RAP1B,RAP1A	OsbZIP23, OsAREB1, OsABF2, Osbzip23, OsAREB2, OsZIP23, ZIP23,FTL, FT-L1, OsFTL1, FTL1,GF14d, OsGF14d, Os14-3-3, 14-3-3d,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,GF14b, OsGF14b, 14-3-3b,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,GF14a, OsGF14a, WIN2, 14-3-3a,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,gid2, GF14e, OsGF14e, OsGID2, 14-3-3e,OsMADS51, OsMADS65, MADS65,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,OsFTL10,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,GF14c, OsGF14c, 14-3-3c,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
46398	30602493	Li J., Liu X., Wang Q., Huangfu J., Schuman M.C., Lou Y.	A Group D MAPK Protects Plants from Autotoxicity by Suppressing Herbivore-Induced Defense Signaling.	Plant Physiol.	179(4)	1386-1401	2019	MPK7	OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5
46399	30626920	Xu L., Zhao H., Wan R., Liu Y., Xu Z., Tian W., Ruan W., Wang F., Deng M., Wang J., Dolan L., Luan S., Xue S., Yi K.	Identification of vacuolar phosphate efflux transporters in land plants.	Nat Plants	5(1)	84-94	2019	GLPT2,_,IPS1,FCO11,VPE2,GLPT1	OsGlpT2, GlpT2,OsSQD2, SQD2, SQD2.2, OsSQD2.2,OsIPS1, IPS1,OsFCO11, OsVPE1, VPE1,OsVPE2,OsGlpT1, GlpT1
46400	30610642	Yin X., Anand A., Quick P., Bandyopadhyay A.	Editing a Stomatal Developmental Gene in Rice with CRISPR/Cpf1.	Methods Mol. Biol.	1917	257-268	2019		
46401	30737149	Yuan H., Qin P., Hu L., Zhan S., Wang S., Gao P., Li J., Jin M., Xu Z., Gao Q., Du A., Tu B., Chen W., Ma B., Wang Y., Li S.	OsSPL18 controls grain weight and grain number in rice.	J Genet Genomics	46(1)	41-51	2019	MIR156K,DEP1,SPL18	miR156k, OsmiR156k, osmiR156k, osa-miR156k, osa-MIR156k,OsDEP1, EP, qPE9-1, DN1, DEP1/DN1/qPE9-1, qNGR9, qDEP1, RGG4/DEP1/DN1/qPE9-1/OsGGC3, RGG4, OsDN1, OsGGC3, GGC3,OsSPL18
46402	30634597	Li J., Zhang M., Sun J., Mao X., Wang J., Wang J., Liu H., Zheng H., Zhen Z., Zhao H., Zou D.	Genome-Wide Characterization and Identification of Trihelix Transcription Factor and Expression Profiling in Response to Abiotic Stresses in Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	20(2)		2019	MSL39,MSL18,MSL35,SH4,MSL29,MSL04,MSL08,MSL17,MSL20,MSL33,MSL15,MSL36,MSL11,_,MSL27,MSL25,MSL34,MSL24,MSL38,_,MSL16,MSL31,MSL13,MSL37,GRY79,MSL14,MSL02,MSL05,MSL30,MSL03,MSL09,MSL19,MSL28,MSL26,MSL01,MSL06,MSL10,RML1,MSL32,MSL41	OsMSL39,OsMSL18,OsMSL35,sh4, SH4, SHAT2, SHA1, qSH4, OsSh4, Sh4, Osh4, OsMSL23, MSL23,OsMSL29,OsMSL04, MSL4,OsMSL08, MSL8,OsMSL17,OsMSL20,OsMSL33,OsMSL15,OsMSL36,OsMSL11,OsGT-2, GT-2, OsMSL22, MSL22,OsMSL27,OsMSL25, OsMSL25a, OsMSL25b,OsMSL34, OsMSL34a, OsMSL34b,OsMSL24,OsMSL38,OsMYB3R-2, OsMYB3R2, MYB3R2, OsMSL07, MSL07, MSL7,OsMSL16,OsMSL31,OsMSL13,OsMSL37,OsGRY79, OsMSL12, MSL12,OsMSL14,OsMSL02, MSL2,OsMSL05, MSL5,OsMSL30,OsMSL03, MSL3,OsMSL09, MSL9,OsMSL19,OsMSL28,OsMSL26,OsMSL01, MSL1,OsMSL06, MSL6,OsMSL10, MSL10,rml1, OsRML1, OsMSL21, MSL21,OsMSL32,OsMSL41
46403	30682815	Kong W., Zhong H., Deng X., Gautam M., Gong Z., Zhang Y., Zhao G., Liu C., Li Y.	Evolutionary Analysis of <i>GH3</i> Genes in Six <i>Oryza</i> Species/Subspecies and Their Expression under Salinity Stress in <i>Oryza sativa</i> ssp. <i>japonica</i>.	Plants (Basel)	8(2)		2019	GH3-10,JAR3,GH3-9,JAR2,GH3-6,LC1,GH3-7,GH3-8,TLD1,GH3-2,JAR1,GH3-4,GH3-11	OsGH3-10,OsJAR3, OsGH3.12, GH3.12, OsGH3-12, GH3-12,OsGH3-9,OsJAR2, OsGH3.3, GH3.3, OsGH3-3, JAR2/GH3-3, GH3-3, OsGH3.3/OsJAR2,OsGH3-6,OsGH3-1, GH3-1, OsGH3.1,GH3.1, OsLC1,OsGH3-7,OsGH3-8, OsMGH3, OsGH3.8, GH3.8, OsGH3-2,OsGH3-13, GH3-13, TLD1/OsGH3.13, TLD1, OsGH3.13, TLD2,OsGH3-2, OsGH3.2, GH3.2,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5,OsGH3-4, OsGH3.4, GH3.4,OsGH3-11, OsGH3.11, GH3.11
46404	30696749	Han Y., Song L., Peng C., Liu X., Liu L., Zhang Y., Wang W., Zhou J., Wang S., Ebbole D., Wang Z., Lu G.D.	A <i>Magnaporthe</i> Chitinase Interacts with a Rice Jacalin-Related Lectin to Promote Host Colonization.	Plant Physiol.	179(4)	1416-1430	2019	SALT,_,PAL1,PR10A,WRKY45,AOS2,_,NAC96,WRKY71	salT*(sal1), SalT1*, sal1, Sal1, SALT, ML, SalT, OsSalT, OsJRL, JRL, Osl43, OsL43, OsMBL1, MBL1,OsSgt1, SGT1, OsSGT1, Os SGT1,OsPAL, Pal1*, Pal1, PAL, Pal_1, PalI, PAL2, OsPAL01, PAL01, OSPAL, CP-1, GP-1, OsPAL1,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsWRKY45,OsAOS2, CYP74A2, OsAOS, OsAOS1,OsABA45, ABA45, OsGDP, GDP,NAC94, ONAC096, ONAC96, NAC4, OsNAC4,OsWRKY71, WRKY-71
46405	30636971	Huang J., Xia T., Li G., Li X., Li Y., Wang Y., Wang Y., Chen Y., Xie G., Bai F.W., Peng L., Wang L.	Overproduction of native endo-beta-1,4-glucanases leads to largely enhanced biomass saccharification and bioethanol production by specific modification of cellulose features in transgenic rice.	Biotechnol Biofuels	12	11	2019	GH9B3,GH9B1	OsGH9B3,OsGH9B1
46406	30626336	Nawaz G., Kang H.	Rice OsRH58, a chloroplast DEAD-box RNA helicase, improves salt or drought stress tolerance in Arabidopsis by affecting chloroplast translation.	BMC Plant Biol.	19(1)	17	2019	RH58	OsRH58
46407	31178878	Lin Y., Sun Z., Li Z., Xue R., Cui W., Sun S., Liu T., Zeng R., Song Y.	Deficiency in Silicon Transporter Lsi1 Compromises Inducibility of Anti-herbivore Defense in Rice Plants.	Front Plant Sci	10	652	2019	_,LSI1,_,AOS2,RBBI3-3	OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,lsi1, NIP2-1, OsNIP2;1, NIP2;1, OsLsi1, lsi(t), OsNIP2.1/OsLsi1/OsSIIT1, OsNIP2.1, NIP2.1,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728,OsAOS2, CYP74A2, OsAOS, OsAOS1,RBBI3-3, OsBBPI, BBPI
46408	30833955	Tang Y., Bao X., Zhi Y., Wu Q., Guo Y., Yin X., Zeng L., Li J., Zhang J., He W., Liu W., Wang Q., Jia C., Li Z., Liu K.	Overexpression of a MYB Family Gene, <i>OsMYB6</i>, Increases Drought and Salinity Stress Tolerance in Transgenic Rice.	Front Plant Sci	10	168	2019	DREB2A,LEA3-1,DREB1A,P5CS,_,_,CATA	OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,OsDREB1A, Os DREB1A, CBF3, OsCBF3, OsDREB1A/OsCBF3, ERF24, OsERF24, OsERF024, OsERF#024, AP2/EREBP#114, AP2/EREBP114, OsDREBL,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsMYB6, MYB6,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,CATA1, Cat A1*, OSCAT-A, Cat2, CatA1, CAT-A, OsCatA, OsCAT, CAT, catA, OSCATA, OsCATc, OsCATA, OsCAT1A, CAT1
46409	30678069	Zha K., Xie H., Ge M., Wang Z., Wang Y., Si W., Gu L.	Expression of Maize MADS Transcription Factor <i>ZmES22</i> Negatively Modulates Starch Accumulation in Rice Endosperm.	Int J Mol Sci	20(3)		2019	GIF1	gif1, CIN2, OsCIN2, OsGIF1
46410	30806155	Moraes de Freitas GP., Basu S., Ramegowda V., Thomas J., Benitez L.C., Braga E.B., Pereira A.	Physiological and transcriptional responses to low-temperature stress in rice genotypes at the reproductive stage.	Plant Signal Behav	14(4)	e1581557	2019		
46411	31039145	Ijaz B., Formentin E., Ronci B., Locato V., Barizza E., Hyder M.Z., Lo Schiavo F., Yasmin T.	Salt tolerance in indica rice cell cultures depends on a fine tuning of ROS signalling and homeostasis.	PLoS ONE	14(4)	e0213986	2019	ERF131,TPKA,DREB2A,_,NHX1,SOS1,RAB16A,LEA22,HAK5,CAX2,ERD4,LEA3-1,RBOHA,KAT1	OsERF#131, OsERF131, AP2/EREBP#094, AP2/EREBP94, SERF1, OsSERF1,TPKa, OsTPKa, OsTpka, TPK1a, OsTPK1a,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,OsPYL/RCAR4, PYL4, OsPYL4, OsPYL6, PYL6,OsNHX1,OsSOS1, OsNHA1,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsLEA22, RAB25, OsRab16, Rab16, OsABA45, ABA45,OsHAK5, FCO13, OsFCO13,OsCAX2, CAX5, OsNCX7, OsNCX7.1, OsNCX7.2, NCX7, OsVCX2, OsOSCA1.2, OSCA1.2,OsOSCA3.1, OSCA3.1, OsIOSCA3.1, OsERD4, OsDDP7, DDP7, OsDDP7.1, OsDDP7.2,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,rbohA, OsrbohA, Os rbohA, OsRbohA, OsNox2, Nox2,OsKAT1
46412	30701663	Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.	Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.	Plant Biotechnol. J.			2019		
46413	31120929	Midorikawa K., Kuroda M., Yamashita H., Tamura T., Abe K., Asakura T.	Oryza sativa Brittle Culm 1-like 6 modulates beta-glucan levels in the endosperm cell wall.	PLoS ONE	14(5)	e0217212	2019	_,BC1L3,BC1L7,BC1L8,BC1L4,BC1L5,BC1L9,BC1L6,BC1L1	OsBC1L2, BC1L2,OsBC1L3,OsBC1L7,OsBC1L8,OsBC1L4,OsBC1L5,OsBC1L9,OsBC1L6,OsBC1L1
46414	30846998	Chen J., Qi T., Hu Z., Fan X., Zhu L., Iqbal M.F., Yin X., Xu G., Fan X.	<i>OsNAR2.1</i> Positively Regulates drought tolerance and grain yield Under Drought Stress Conditions in Rice.	Front Plant Sci	10	197	2019	NAC122,ERF3,NRT2.1,NAR2.1,NRT2.2,_,DREB2A,_,P5CS,NRT2.3,RAB16C	OsNAC10, NAC10, ONAC122, NAC122,AP37, OsAP37, OsERF3, OsERF#075, OsERF075, OsERF75, ERF75, AP2/EREBP#004, AP2/EREBP4, OsBIERF2, BIERF2,OsNRT2.1, OsNRT2.2,OsNAR2.1, OsNRT3.1A,OsNRT2.2, OsNRT2.1,OsMYB2, MYB2,OsDREB2A, OsDREB2a, ERF40, OsERF#040, OsERF040, OsERF40, AP2/EREBP#167, AP2/EREBP167,SNAC1, snac1, OsNAC9, ONAC002, ONAC2, ONAC033, ONAC33, ONAC043, ONAC43, ONAC044, ONAC44, OsNAC19, NAC19, SNAC1/ONAC002, OsSNAC1,OsP5CS, P5CS1, OsP5CS1, OsALDH18B1, ALDH18B1, OsP5CS-1, P5CS-1,OsNRT2.3, OsNRT2;1, OsNRT2.3a, OsNRT2.3b, OsNRT2;3a, OsNRT2.5 ,rab21, OsLEA27, rab16C
46415	30645710	Lee K., Eggenberger A.L., Banakar R., McCaw M.E., Zhu H., Main M., Kang M., Gelvin S.B., Wang K.	CRISPR/Cas9-mediated targeted T-DNA integration in rice.	Plant Mol. Biol.	99(4-5)	317-328	2019		
46416	31293603	Hong Y., Liu Q., Cao Y., Zhang Y., Chen D., Lou X., Cheng S., Cao L.	The <i>OsMPK15</i> Negatively Regulates <i>Magnaporthe oryza</i> and <i>Xoo</i> disease resistance via SA and JA Signaling Pathway in Rice.	Front Plant Sci	10	752	2019	_	OsMPK16, MPK16, OsMPK15, MPK15
46417	30697955	Xie E., Li Y., Tang D., Lv Y., Shen Y., Cheng Z.	A strategy for generating rice apomixis by gene editing.	J Integr Plant Biol			2019	_,OSD1,RAD21-4,TOP6A1	OspPLAIIbeta, pPLAIIbeta, OspPLAIIphi, pPLAIIphi, NLD, PLP1, OspPLAIIphi/PLP1, OsMATL, MATL,OsOSD1,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsTOP6A1, OsSPO11-1, OsSPO11A, SPO11-1
46418	30658457	El-Esawi MA., Alayafi A.A.	Overexpression of Rice <i>Rab7</i> Gene Improves Drought and heat tolerance and Increases grain yield in Rice (<i>Oryza sativa</i> L.).	Genes (Basel)	10(1)		2019	_	OsRab7B3, Rab7B3, OsRab7, Rab7
46419	30923712	Li N., Wang Y., Lu J., Liu C.	Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice.	International Journal of Genomics	2019	2146391	2019	G1L8,G1L9,G1L3,G1L12,MADS50,G1L13,G1L11,MADS22,MADS55,BLS1,G1L2,G1L5,G1,G1L7,G1L1,G1L10,G1L4	OsG1L8,OsG1L9,OsG1L3,OsG1L12,OsMADS50, AGL20, SOC1, OsSOC1, RMADS208,OsG1L13,OsG1L11,OsMADS22, RMD1,OsMADS55,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsG1L2,OsG1L5, TAW1, OsTAW1,g1 (lng), lng, g1, ELE, OsG1, G1/ELE,OsG1L7,OsG1L1,OsG1L10,OsG1L4
46420	30628157	Ji X., Du Y., Li F., Sun H., Zhang J., Li J., Peng T., Xin Z., Zhao Q.	The basic helix-loop-helix transcription factor, OsPIL15, regulates grain size.via directly targeting a purine permease gene OsPUP7 in rice.	Plant Biotechnol. J.			2019	PIL15,PUP7	OsPIL15, OsbHLH105, PIF3, OsPIF3,OsPUP7
46421	31244876	Wang B., Xie G., Liu Z., He R., Han J., Huang S., Liu L., Cheng X.	Mutagenesis Reveals That the <i>OsPPa6</i> Gene Is Required for Enhancing the Alkaline Tolerance in Rice.	Front Plant Sci	10	759	2019	_,_,_,PPA6,_,GS2,_,_	,,,OsPPa6, PPa6,,OsGS2, GLN2, RGS31,,
46422	30641408	Li Y., Li C., Cheng L., Yu S., Shen C., Pan Y.	Over-expression of OsPT2 under a rice root specific promoter Os03g01700.	Plant Physiol. Biochem.	136	52-57	2019		
46423	30535321	Xu F., Wang K., Yuan W., Xu W., Shuang L., Kronzucker H.J., Chen G., Miao R., Zhang M., Ding M., Xiao L., Kai L., Zhang J., Zhu Y.	Overexpression of rice aquaporin OsPIP1;2 improves yield by enhancing mesophyll CO2 conductance and phloem sucrose transport.	J. Exp. Bot.	70(2)	671-681	2019	PIP1;2	OsPIP1;2, PIP1-2, OsPIP1-2
46424	30626141	Descalsota-Empleo GI., Noraziyah A.A.S., Navea I.P., Chung C., Dwiyanti M.S., Labios R.J.D., Ikmal A.M., Juanillas V.M., Inabangan-Asilo MA., Amparado A., Reinke R., Cruz C.M.V., Chin J.H., Swamy B.P.M.	Genetic Dissection of Grain Nutritional Traits and Leaf Blight Resistance in Rice.	Genes (Basel)	10(1)		2019		
46425	30675653	Ma T., Dong F., Luan D., Hu H., Zhao J.	Gene expression and localization of arabinogalactan proteins during the development of anther, ovule, and embryo in rice.	Protoplasma	256(4)	909-922	2019	_,_,FLA10,ENODL16,_,_,_,_,_,ENODL14,_,_,_,_,_,_,FLA2,AGP16,AGP7,_,ENODL17,ENODL9,UCL33	AGP, OsAGP,AGP, OsAGP,OsFLA10,OsENODL16,AGP, OsAGP,AGP, OsAGP,AGP, OsAGP,AGP, OsAGP, OsXYLP8, XYLP8,AGP, OsAGP,OsENODL14,AGP, OsAGP,OsHyPRP08, HyP/GRP08, OsHyPRP8, HyP/GRP8,AGP, OsAGP,AGP, OsAGP,AGP, OsAGP,AGP, OsAGP,OsFLA2,OsAGP16,OsAGP7,OsLTPG24, OsLTPg24, OsLtpVIII.1, LTPG24, LTPg24, LtpVIII.1,OsENODL17,OsENODL9,OsUCL33
46426	30621581	Lee H.S., Hwang W.H., Jeong J.H., Ahn S.H., Baek J.S., Jeong H.Y., Park H.K., Ku B.I., Yun J.T., Lee G.H., Choi K.J.	Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage.	BMC Genomics	20(1)	18	2019		
46427	30693011	Chandran V., Wang H., Gao F., Cao X.L., Chen Y.P., Li G.B., Zhu Y., Yang X.M., Zhang L.L., Zhao Z.X., Zhao J.H., Wang Y.G., Li S., Fan J., Li Y., Zhao J.Q., Li S.Q., Wang W.M.	MiR396-<i>OsGRF</i>s Module Balances Growth and Rice blast disease-Resistance.	Front Plant Sci	9	1999	2018	GRF3,MIR396H,GRF11,GRF6,MIR396E,GRF7,MIR396D,GRF8,MIR396G,GRF9,MIR396F,MIR396C,GS2,GRF5,GRF2,MIR396B,MIR396A,GRF7	OsGRF3,miR396h, osa-miR396h, osa-MIR396h,OsGRF11,OsGRF6,miR396e, osa-miR396e, osa-MIR396eosa-miR396e-3p osa-miR396e-5p,OsGRF7,miR396d, osa-miR396d, osa-MIR396d,OsGRF8,miR396g, osa-miR396g, osa-MIR396g,OsGRF9,miR396f, osa-miR396f, osa-MIR396fosa-miR396f-3p osa-miR396f-5p,miR396c, osa-miR396c, osa-MIR396c, osa-miR396c-3p, osa-miR396c-5p, OsmiR396c,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,OsGRF5,OsGRF2,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,OsGRF7
46428	30671680	Mao X., Zhang J., Liu W., Yan S., Liu Q., Fu H., Zhao J., Huang W., Dong J., Zhang S., Yang T., Yang W., Liu B., Wang F.	The MKKK62-MKK3-MAPK7/14 module negatively regulates seed dormancy in rice.	Rice (N Y)	12(1)	2	2019	_,_,MKK3,_,MAPK4	OsNPK1-PK, NPK1-PK, OsMKKK62, MKKK62,OsMAPK33, OsMPK14, OsMAPK2, OsMAP3, OsMPK14, OsMPK3, MAPK33, MPK14, MAPK2, MAP3, MPK14, MPK3,OsMKK3,OsMFT2, MFT2, OsMFT,OsMAPK4, OsMAP2, OsMSRMK3, OsMPK4, OsMPK7, MAP2, MSRMK3, MPK4, MPK7, MAPK7, OsMAPK7
46429	30804974	Subramanyam K., Du Laing G., Van Damme EJM.	Sodium Selenate Treatment Using a Combination of Seed Priming and Foliar Spray Alleviates Salinity Stress in Rice.	Front Plant Sci	10	116	2019	NHX1	OsNHX1
46430	31191567	Zhang L., Chen L., Dong H.	Plant Aquaporins in Infection by and Immunity Against Pathogens - A Critical Review.	Front Plant Sci	10	632	2019	XA13,PIP1;3	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
46431	30032201	Salvador-Guirao R., Baldrich P., Tomiyama S., Hsing Y.I., Okada K., San Segundo B.	OsDCL1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice.	Ann. Bot.	123(1)	79-93	2019		
46432	30984209	Moon S.J., Min M.K., Kim J.A., Kim D.Y., Yoon I.S., Kwon T.R., Byun M.O., Kim B.G.	Ectopic Expression of <i>OsDREB1G</i>, a Member of the OsDREB1 Subfamily, Confers Cold Stress Tolerance in Rice.	Front Plant Sci	10	297	2019	ADF3,DREB1G	OsADF3,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I
46433	30639786	Bari M.A., Akther M.S., Reza M.A., Kabir A.H.	Cadmium tolerance is associated with the root-driven coordination of cadmium sequestration, iron regulation, and ROS scavenging in rice.	Plant Physiol. Biochem.	136	22-33	2019		
46434	30584664	Shi W., Tang D., Shen Y., Xue Z., Zhang F., Zhang C., Ren L., Liu C., Du G., Li Y., Yan C., Cheng Z.	Oshop2 regulates the maturation of crossovers by promoting homologous pairing and synapsis in rice meiosis.	New Phytol.	222(2)	805-819	2019	_,RAD21-4,ZEP1,COM1,RAD51C,HOP2	HEI10, HEI10A, HEI10B, OsHEI10,OsRad21-4, REC8, OsREC8, OsRAD21-4,OsZEP1,OsCOM1,OsRAD51C, OsRad51C, RAD51C-1, RAD51C-2, RAD51C-3,OsHOP2
46435	31231411	L?pez-Cristoffanini C., Serrat X., J?uregui O., Nogu?s S., L?pez-Carbonell M.	Phytohormone Profiling Method for Rice: Effects of <i>GA20ox</i> Mutation on the Gibberellin Content of Japonica Rice Varieties.	Front Plant Sci	10	733	2019	SD1	sd1, sd1 (d47, sd1-d, sd1-1), d49(sd1-r), d47, C20OX2, OsGA20ox-2, OsGA20ox2, GA20ox-2, GA20OX2, GA20ox2, sd-1,SD1-ja, SD1-in, sd1-2, Sd-1, GA20, 20ox2, Os20ox2
46436	30870429	Kishor D.S., Lee C., Lee D., Venkatesh J., Seo J., Chin J.H., Jin Z., Hong S.K., Ham J.K., Koh H.J.	Novel allelic variant of Lpa1 gene associated with a significant reduction in seed phytic acid content in rice (Oryza sativa L.).	PLoS ONE	14(3)	e0209636	2019	LPA1,LPA1-P	Lpa1, OsLpa1, OsLpa1.1, OsLpa1.2, OsLpa1.3, Oslpa1, OsLpa1-3.1, OsLpa1-3.2, OsLpa1-3.3,OsLpa1-P, Lpa1-P
46437	30610522	Yang Z., Liu L., Sun L., Yu P., Zhang P., Abbas A., Xiang X., Wu W., Zhang Y., Cao L., Cheng S.	osms1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice.	Plant Mol. Biol.	99(1-2)	175-191	2019	CYP704B2,AP37 ,_,_,PTC1,RAP1A,EAT1,CYP703A3,GAMYB,OSC4,OSC6	OsCYP704B2,OsAP37,OsAP25, Radc1, AP25,OsbHLH142, bHLH142, TIP2, OsTIP2,OsMS1, tms9-1, OsPTC1, MS1, TMS9-1,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,OsEAT1, OsbHLH141, EAT1/DTD1, bHLH141, DTD1, DTD,OsCYP703A3,OsGAMYB, GAM1, OsGAMyb, Os-MYBGA, Os GAMYB,Osc4, OsC4, Osg4B, OsLTPc1, OsLtpIII.1,Osc6, Osg6B, OsG6B, OsLTPG25, OsLTPg25, OsLtpVII.1, Os C6, C6
46438	30626335	Shalmani A., Jing X.Q., Shi Y., Muhammad I., Zhou M.R., Wei X.Y., Chen Q.Q., Li W.Q., Liu W.T., Chen K.M.	Characterization of B-BOX gene family and their expression profiles under hormonal, abiotic and metal stresses in Poaceae plants.	BMC Genomics	20(1)	27	2019	_,_,_,_,_,_,_,_,_,_,_,_,_,_,SE1,_,_,_,_,_,_,_,_,_,_,_,_,_,_,_	OsBBX14, BBX14, OsDBB3b, DBB3b,OsBBX11, OsSTO, BBX11, STO,OsBBX30, BBX30,OsP, OsBBX9, OsCCT12, BBX9, CCT12,OsBBX19, BBX19, OsM, DTH2, qDTH-2, OsCCT22, CCT22,OsBBX16, OsDBB3a, BBX16, DBB3a,OsBBX22, BBX22,OsBBX10, OsJ, OsCCT14, OsCOL10, COL10, OsCOL9, BBX10, CCT14, COL9,OsBBX21, BBX21,OsBBX1, OsDBB3c, BBX1, DBB3c,OsBBX13, BBX13,OsBBX6, BBX6,OsCOL4, OsD, OsBBX5, OsCOL4/OsD, OsCCT06, COL4, BBX5, CCT06,OsBBX28, OsCCT32, OsQ, BBX28, CCT32,Se1(Lm,Lf,Rs,Fl), se(t), Hd1, HD1, Fl, Lm, Se1, K, Rs, Lf, Se-1, Hd1(t), qHD1(t), OsA, OsBBX18, BBX18, Hd1/OsA, OsCCT21, CCT21,OsBBX26, BBX26, OsO, OsCCT30, CCT30, OsCOL15, COL15, OsCOL15/OsBBX26, Hd1-3,OsBBX3, OsF, OsCCT05, BBX3, CCT05,OsBBX24, BBX24,OsBBX12, OsC, OsCCT16, BBX12, CCT16,OsB, OsCO3, OsBBX27, OsCO3/OsB, OsCCT31, CO3, BBX27, CCT31,OsBBX29, OsDBB1, BBX29, DBB1,OsBBX8, OsK, OsCCT09, OsGhd2, OsK/Ghd2, BBX8, CCT09, Ghd2,OsBBX23, OsCCT27, BBX23, CCT27, OsR, OsCOL13, COL13,OsBBX17, BBX17, OsL, OsCCT20, CCT20, OsCOL16, COL16,OsBBX20, OsE, OsCCT23, BBX20, CCT23,OsBBX4, OsSTH, BBX4, STH,OsBBX15, OsCCT19, OsS, OsSTA162, BBX15, CCT19, STA162,OsBBX25, OsG, OsCCT29, BBX25, CCT29,OsBBX2, BBX2,OsN, OsBBX7, OsCCT08, OsDTH2, BBX7, CCT08, DTH2
46439	30784850	Muhammad I., Li W.Q., Jing X.Q., Zhou M.R., Shalmani A., Ali M., Wei X.Y., Sharif R., Liu W.T., Chen K.M.	A systematic in silico prediction of gibberellic acid stimulated GASA family members: A novel small peptide contributes to floral architecture and transcriptomic changes induced by external stimuli in rice.	J. Plant Physiol.	234-235	117-132			
46440	30808744	Mao D., Xin Y., Tan Y., Hu X., Bai J., Liu Z.Y., Yu Y., Li L., Peng C., Fan T., Zhu Y., Guo Y.L., Wang S., Lu D., Xing Y., Yuan L., Chen C.	Natural variation in the <i>HAN1</i> gene confers chilling tolerance in rice and allowed adaptation to a temperate climate.	Proc. Natl. Acad. Sci. U.S.A.	116(9)	3494-3501	2019	ERF20,DREB1B,HAN1,DREB1G,DREB1F	OsERF#020, OsERF020, OsERF20, AP2/EREBP#126, AP2/EREBP126, OsDREB1G,OsDREB1B, ERF31, OsERF031, OsERF#031, OsERF31, AP2/EREBP#169, AP2/EREBP169, OsDREB1b, OsDREB1C,OsHAN1,OsDREB1G, OsERF025, OsERF#025, OsERF25, ERF25, AP2/EREBP#138, AP2/EREBP138, OsDREB1I,OsERF#027, OsERF027, OsERF27, ERF27, AP2/EREBP#081, AP2/EREBP81, OsDREB1F
46441	30760558	Ye M., Glauser G., Lou Y., Erb M., Hu L.	Molecular Dissection of Early Defense Signaling Underlying Volatile-Mediated Defense Regulation and Herbivore Resistance in Rice.	Plant Cell	31(3)	687-698	2019	MSRMK2,AOC,OG1,LRR-RLK1,MAPK6,WRKY70,JAR1	OsMSRMK2, OsMAPK5, OsMAP1, OsMPK3, OsBIMK1, OsMAPK2, MPK5, BIMK1, MAPK2, MAPK5, MPK3, OsMPK5, OsMAPK3, OsMAPK5b, MAPK3,OsAOC, AOC1, OsAOC1, HB, CPM2,OsOPR7, OPR7, OsOPR13, OsOPR3, OsOPR5, OsOPR9, OsOPR08-1,  OPR13, OPR3, OPR5, OPR9, OPR08-1,OsLRR-RLK1,OsMAPK6, OsMPK6, OsSIPK, SIPK, OsMAPK1, MAPK1, MPK1, OsMPK1, MPK6,OsWRKY70,OsJAR1, OsGH3.5, GH3.5, OsGH3-5, GH3-5
46442	30825599	Sahu J., Panda D., Baruah G., Patar L., Sen P., Borah B.K., Modi M.K.	Revealing shared differential co-expression profiles in rice infected by virus from reoviridae and sequiviridae group.	Gene	698	82-91	2019		
46443	30819931	Jin S., Zong Y., Gao Q., Zhu Z., Wang Y., Qin P., Liang C., Wang D., Qiu J.L., Zhang F., Gao C.	Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice.	Science	364(6437)	292-295	2019		
46444	30718437	Chang Y.M., Lin H.H., Liu W.Y., Yu C.P., Chen H.J., Wartini P.P., Kao Y.Y., Wu Y.H., Lin J.J., Lu M.J., Tu S.L., Wu S.H., Shiu S.H., Ku M.S.B., Li W.H.	Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes.	Proc. Natl. Acad. Sci. U.S.A.	116(8)	3091-3099	2019		
46445	30723146	Lin C.C., Chao Y.T., Chen W.C., Ho H.Y., Chou M.Y., Li Y.R., Wu Y.L., Yang H.A., Hsieh H., Lin C.S., Wu F.H., Chou S.J., Jen H.C., Huang Y.H., Irene D., Wu W.J., Wu J.L., Gibbs D.J., Ho M.C., Shih M.C.	Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence.	Proc. Natl. Acad. Sci. U.S.A.	116(8)	3300-3309	2019	ERF67,_,ERF66,_,ADH2,Hb1,SUB1A,_,Hb2,ADH1	OsERF#067, OsERF067, OsERF67, AP2/EREBP#076, AP2/EREBP76,OsPFK05, PFK05, PFK5, OsPFK5,OsERF#066, OsERF066, OsERF66, AP2/EREBP#030, AP2/EREBP30,,Adh2*, Adh2,HB1, OsHB1, GLB1A, rHb1, ORYsa GLB1a, nsHb1, OsNSHB1, hb1, nsHb, OsPgb1.1, Pgb1.1,Sub1A, Sub1A-1, Sub1A-2, OsSUB1A,,HB2, OsHB2, OsNSHB2, hb2, GLB1b, ORYsa GLB1b, OsPgb1.2, Pgb1.2,Adh1, Adh1/2, adh1/adh2, OsADH1
46446	30796281	Zhao Y., Qiang C., Wang X., Chen Y., Deng J., Jiang C., Sun X., Chen H., Li J., Piao W., Zhu X., Zhang Z., Zhang H., Li Z., Li J.	New alleles for chlorophyll content and stay-green traits revealed by a genome wide association study in rice (Oryza sativa).	Sci Rep	9(1)	2541	2019	SG1	OsSG1, OsSG1-1, OsSG1-2, OsSG1-3
46447	30753903	Roy D., Chakrabarty J., Mallik R., Chaudhuri S.	Rice Trithorax factor ULTRAPETALA 1 (OsULT1) specifically binds to "GAGAG" sequence motif present in Polycomb response elements.	Biochim Biophys Acta Gene Regul Mech	1862(5)	582-597	2019		
46448	30730020	Kim J.H., Lim S.D., Jang C.S.	Oryza sativa heat-induced RING finger protein 1 (OsHIRP1) positively regulates plant response to heat stress.	Plant Mol. Biol.	99(6)	545-559	2019	HIRP1,_,ARK4	OsRFP, OsHIRP1,OS-PYDK, Ospdhk, PDHK, Ospdhk2, pdhk2 OsHRK1, HRK1,OsARK4
46449	30778635	Wen J., Wang L., Wang J., Zeng Y., Xu Y., Li S.	The transcription factor OsbHLH138 regulates thermosensitive genic male sterility in rice via activation of tms5.	Theor. Appl. Genet.	132(6)	1721-1732	2019	TMS5,_,_,_,UBL40-2	TRZ1, OsTRZ1, OsaTRZ1, OsTMS5,UbL40-4, OsUbL40-4,OsbHLH138, bHLH138, OsPIF4, PIF4,UbL40-1, OsUbL40-1,UbL40-2, OsUbL40-2
46450	30771255	Ma J., Wang Y., Ma X., Meng L., Jing R., Wang F., Wang S., Cheng Z., Zhang X., Jiang L., Wang J., Wang J., Zhao Z., Guo X., Lin Q., Wu F., Zhu S., Wu C., Ren Y., Lei C., Zhai H., Wan J.	Disruption of gene SPL35, encoding a novel CUE domain-containing protein, leads to cell death and enhanced disease response in rice.	Plant Biotechnol. J.			2019	PR1B,CNX,CHS,SPL35,PR10A,_,DELTA-COP2,PAL1,PR5,UBC5A,_,AOS2,DELTA-COP1 	OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,OsCNX, OsCNX1, CNX1,CHS*, Oschs, chs, chas, OsCHS, OsCHS1, CHS1, OsPKS26, PKS26,OsSPL35,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsBiP1, BiP1, BiP, Bip3, OsBiP3, BIP1/OsBIP3, OsMed37_2, Med37_2 ,Delta-COP2,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsPR5, Pir2, PR-5, PR5-1,OsUBC5a, OsUBC14, UBC14,OsPDIL1;1, PDIL1;1, PDIL1-1, PDIL 1-1, PDI, OsPDIL1-1,OsAOS2, CYP74A2, OsAOS, OsAOS1,Delta-COP1
46451	31128693	Huang W., Nie H., Feng F., Wang J., Lu K., Fang Z.	Altered expression of OsNPF7.1 and OsNPF7.4 differentially regulates tillering and grain yield in rice.	Plant Sci.	283	23-31	2019		
46452	30940336	Lenka S.K., Singh A.K., Muthusamy S.K., Smita S., Chinnusamy V., Bansal K.C.	Heterologous expression of rice RNA-binding glycine-rich (RBG) gene OsRBGD3 in transgenic Arabidopsis thaliana confers cold stress tolerance.	Funct. Plant Biol.			2019		
46453	30849693	Xie M.Y., Tian Z.H., Yang X.L., Liu B.H., Yang J., Lin H.H.	The role of OsNLA1 in regulating arsenate uptake and tolerance in rice.	J. Plant Physiol.	236	15-22	2019		
46454	30548752	Bai P., Park C.H., Shirsekar G., Songkumarn P., Bellizzi M., Wang G.L.	Role of lysine residues of the Magnaporthe oryzae effector AvrPiz-t in effector- and PAMP-triggered immunity.	Mol. Plant Pathol.	20(4)	599-608	2019	NAC4,RAC1,PAL1,APIP10,PIZT	OsNAC4, NAC68, ONAC068, OnNAC4*, OnNAC4, OsNAC4/ONAC068,OsRAC1, OsRac1, Os Rac1, Rac1, Os-Rac1,OsPAL1, PAL, OsPAL06, ZB8, pal/zb8, PAL06, rPAL-P5, ZB8PAL, OsPAL, OsPAL2, OsPAL4, PAL4, PAL/ZB8, OsPAL6, PAL6,OsAPIP10,Piz-t, Pi-zt, Pi-z(t), Pi2/Pizt, Pizt, Pi9
46455	30589140	Ren Y., Chen D., Li W., Zhou D., Luo T., Yuan G., Zeng J., Cao Y., He Z., Zou T., Deng Q., Wang S., Zheng A., Zhu J., Liang Y., Liu H., Wang L., Li P., Li S.	Osshoc1 and OsPTD1 are essential for crossover formation during rice meiosis.	Plant J.	98(2)	315-328	2019	PTD1,SHOC1	OsPTD1,OsSHOC1
46456	30705076	Tian J., Cao L., Chen X., Chen M., Zhang P., Cao L., Persson S., Zhang D., Yuan Z.	The OsJAZ1 degron modulates jasmonate signaling sensitivity during rice development.	Development	146(4)		2019	_,EG2,_	OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, JAZ1, EG2/OsJAZ1, EG2, JAZ1/EG2,OsbHLH009, bHLH009, OsMYC2, MYC2
46457	30796564	Wang M., Yang D., Ma F., Zhu M., Shi Z., Miao X.	OsHLH61-OsbHLH96 influences rice defense to brown planthopper through regulating the pathogen-related genes.	Rice (N Y)	12(1)	9	2019	PR1-71,_,PR10A,PR1-72,_,_,_,_,TIFY6A,PR1A	OsPR1#071, OsPR1-71,OsPR1b, PR1b,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 ,OsPR1#072, OsPR1-72, PR1L, OsPR1L,PR1 ,OsbHLH163, bHLH163, OsHLH61, HLH61,OsPR5, PR5,OsbHLH044, bHLH044, OsbHLH96, bHLH96, bHLH096,OsJAZ9, OsJAZ 3, OsJAZ3, JAZ9, JAZ3, OsTIFY6a,OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP, OsPR1 
46458	30791211	Liu C.L., Gao Z.Y., Shang L.G., Yang C.H., Ruan B.P., Zeng D.L., Guo L.B., Zhao F.J., Huang C.F., Qian Q.	Natural variation in the promoter of OsHMA3 contributes to differential grain cadmium accumulation between Indica and Japonica rice.	J Integr Plant Biol			2019	GCC7	HMA3, OsHMA3, OsHMA3a, OsHMA3n, osHMA3
46459	31245762	Yamazaki S., Ochiai K., Matoh T.	Rice plants have three homologs of glutathione synthetase genes, one of which, <i>OsGS2</i>, codes for hydroxymethyl-glutathione synthetase.	Plant Direct	3(2)	e00119	2019	GS1 ,GS3,GS2	OsGS1 ,OsGS3,OsGS2
46460	30774020	Yamaguchi T., Yamakawa H., Nakata M., Kuroda M., Hakata M.	Suppression of Phospholipase D genes improves chalky grain production by high temperature during the grain-filling stage in rice.	Biosci. Biotechnol. Biochem.	83(6)	1102-1110	2019		
46461	30565833	Redillas MCFR., Bang S.W., Lee D.K., Kim Y.S., Jung H., Chung P.J., Suh J.W., Kim J.K.	Allantoin accumulation through overexpression of ureide permease1 improves rice growth under limited nitrogen conditions.	Plant Biotechnol. J.	17(7)	1289-1301	2019	AIRC,ATASE2,GARS,ATIC,ASL,ATASE3,UPS1,ADSS,_,FGAMS,ATASE1,AIRS,GART,GMPS1,ASS1	OsAIRC,Atase2, OsATASE2,OsGARS,OsATIC,OsASL,Atase3, OsATASE3,OsUPS1,OsAdSS, AdSS, ASS2, OsASS2,CBSIMPDH1, OsCBSIMPDH1, OsCBSIMPDH1a, OsCBSIMPDH1b, IMPDH, OsIMPDH,OsFGAMS,Atase1, OsATASE1,OsAIRS,OsGART,OsGMPS1,OsASS1
46462	30819116	Bernardino K.C., Pastina M.M., Menezes C.B., de Sousa SM., Maciel L.S., Carvalho G., Guimar?es CT., Barros B.A., da Costa E Silva L., Carneiro P.C.S., Schaffert R.E., Kochian L.V., Magalhaes J.V.	The genetic architecture of phosphorus efficiency in sorghum involves pleiotropic QTL for root morphology and grain yield under low phosphorus availability in the soil.	BMC Plant Biol.	19(1)	87	2019		
46463	30712129	Joo J., Lee Y.H., Song S.I.	OsbZIP42 is a positive regulator of ABA signaling and confers drought tolerance to rice.	Planta	249(5)	1521-1533	2019	BZIP42,_,LEA3-1,RAB16A,SAPK4	OsbZIP42, OsABF7, ABF7, HBF1,OsPP2C06/OsABI2, OsPP2C06, OsPP2C6, PP2C96, OsABI2, OsPP10, ABI2, OsABIL1, ABIL1,OsLEA3-1, OsLea3-1, LEA3, OsLEA3, OsLEA19, OsLEA19a, LEA19, OsLEA19b, OsLEA3, Oslea3, oslea3,Rab16A, rab21, RAB21, OsRab21, OsRAB21, OsRab16A, OsLEA29, rab16A, OsRAB16A,OsSAPK4
46464	30758674	Ke S., Liu S., Luan X., Xie X.M., Hsieh T.F., Zhang X.Q.	Mutation in a putative glycosyltransferase-like gene causes programmed cell death and early leaf senescence in rice.	Rice (N Y)	12(1)	7	2019	SPY,SEC2,PLS3,SLR1,SEC1,GID1	OsSPY,OsSEC2,OsPLS3, SPL21, spl21(t), OsSPL21, OsGCNT, GCNT, OsPSL, PSL, C2GNT1, OsC2GNT1,slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18,OsSEC1,gid1, OsGID1, Thl, Os GID1
46465	30734457	Dai Z., Tan J., Zhou C., Yang X., Yang F., Zhang S., Sun S., Miao X., Shi Z.	The OsmiR396-OsGRF8-OsF3H-flavonoid pathway mediates resistance to the brown planthopper in rice (Oryza sativa).	Plant Biotechnol. J.			2019	_,MIR396A,GRF8,GRF5,_,GRF7,MIR396B,GRF6,GS2,GRF12,GRF2,GRF3,GRF1,_	FLS, 2-ODD2, Os2-ODD2, 2ODD2, Os2ODD2, OsF3H, F3H,miR396a, osa-miR396a, osa-MIR396aosa-miR396a-3p osa-miR396a-5p, OsmiR396a,OsGRF8,OsGRF5,OsCOI1b, COI1b, OsCOI1H, COI1H, OsFbox260, Fbox260, Os_F0646,OsGRF7,miR396b, osa-miR396b, osa-MIR396bosa-miR396b-3p osa-miR396b-5p, OsmiR396b,OsGRF6,OsGRF4, GRF4, GS2/OsGRF4, PT2, GLW2, GS2/GL2,OsGRF12,OsGRF2,OsGRF3,OsGRF1,OsCOI1a, OsCOI1, Os_F0728, COI1a, COI1, F0728
46466	30791202	Zhou Y., Zhou S., Wang L., Wu D., Cheng H., Du X., Mao D., Zhang C., Jiang X.	miR164c and miR168a regulate seed vigor in rice.	J Integr Plant Biol			2019		
46467	30387038	Liu Q., Yan S., Huang W., Yang J., Dong J., Zhang S., Zhao J., Yang T., Mao X., Zhu X., Liu B.	NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice.	Plant Mol. Biol.	98(4-5)	289-302	2018		
46468	30397229	Kitazumi A., Pabuayon I.C.M., Ohyanagi H., Fujita M., Osti B., Shenton M.R., Kakei Y., Nakamura Y., Brar D.S., Kurata N., de Los Reyes BG.	Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation.	Sci Rep	8(1)	16346	2018		
46469	30697122	Hu Z., Cao L., Sun X., Zhu Y., Zhang T., Jiang L., Liu Y., Dong S., Sun D., Yang J., He H., Luo X.	Fine mapping of a major quantitative trait locus, <i>qGNP7(t)</i>, controlling grain number per panicle in African rice (<i>Oryza glaberrima</i> S.).	Breed. Sci.	68(5)	606-613	2018		
46470	30512031	Yang R., Li J., Zhang H., Yang F., Wu Z., Zhuo X., An X., Cheng Z., Zeng Q., Luo Q.	Transcriptome Analysis and Functional Identification of <i>Xa13</i> and <i>Pi-ta</i> Orthologs in <i>Oryza granulata</i>.	Plant Genome	11(3)		2018		
46471	30496782	Sharma E., Jain M., Khurana J.P.	Differential quantitative regulation of specific gene groups and pathways under drought stress in rice.	Genomics			2018		
46472	30597788	Li J., Shu Y., Wang F., Wang J.	Effects of Cry1Ab-expressing Bt rice straw return on juvenile and adult Eisenia fetida.	Ecotoxicol. Environ. Saf.	169	881-893	2019		
46473	30403303	Lee K., Back K.	Melatonin-deficient rice plants show a common semidwarf phenotype either dependent or independent of brassinosteroid biosynthesis.	J. Pineal Res.	66(2)	e12537	2019		
46474	30459081	Wang D., Fahad S., Saud S., Kamran M., Khan A., Khan M.N., Hammad H.M., Nasim W.	Morphological acclimation to agronomic manipulation in leaf dispersion and orientation to promote "Ideotype" breeding: Evidence from 3D visual modeling of "super" rice (Oryza sativa L.).	Plant Physiol. Biochem.	135	499-510	2019		
46475	30498958	Hamam A.M., Coskun D., Britto D.T., Plett D., Kronzucker H.J.	Plasma-membrane electrical responses to salt and osmotic gradients contradict radiotracer kinetics, and reveal Na+-transport dynamics in rice (Oryza sativa L.).	Planta	249(4)	1037-1051	2019		
46476	30555350	Wang Y., Ju D., Yang X., Ma D., Wang X.	Comparative Transcriptome Analysis Between Resistant and Susceptible Rice Cultivars Responding to Striped Stem Borer (SSB), <i>Chilo suppressalis</i> (Walker) Infestation.	Front Physiol	9	1717	2018		
46477	30510556	Poli Y., Nallamothu V., Balakrishnan D., Ramesh P., Desiraju S., Mangrauthia S.K., Voleti S.R., Neelamraju S.	Increased Catalase Activity and Maintenance of Photosystem II Distinguishes High-Yield Mutants From Low-Yield Mutants of Rice var. Nagina22 Under Low-Phosphorus Stress.	Front Plant Sci	9	1543	2018		
46478	30391752	Nakamura H., Hirabayashi K., Miyakawa T., Kikuzato K., Hu W., Xu Y., Jiang K., Takahashi I., Niiyama R., Dohmae N., Tanokura M., Asami T.	Triazole Ureas Covalently Bind to Strigolactone Receptor and Antagonize Strigolactone Responses.	Mol Plant	12(1)	44-58	2019		
46479	30410573	Li F., Liu S., Xu H., Xu Q.	A novel FC17/CESA4 mutation causes increased biomass saccharification and lodging resistance by remodeling cell wall in rice.	Biotechnol Biofuels	11	298	2018	_,BC6,CESA7,_,BC12,BC7	OsIRX10, IRX10,Bc6*, Bc6, OsCesA9, CESA9, OsCESA9, OS_CESA09, OsCesA 9, CesA9, BC88,OsCesA7, OsCESA7, OS_CESA07, OsCesA 7, CesA7,OsIRX14, IRX14, OsGT43J, GT43J, OsGT43J/OsIRX14,bc12, gdd, GDD1, BC12/GDD1, OsGDD1, OsBC12/GDD1, OsBC12,OsCesA4, OsCESA4, CESA4, OS_CESA04, BC11, bc7t, Bc7(t), bc-7, OsCesA 4, CesA4, FC17/CESA4, FC17, OsFC17
46480	30497415	Peethambaran P.K., Glenz R., H?ninger S., Shahinul Islam SM., Hummel S., Harter K., Kolukisaoglu ?., Meynard D., Guiderdoni E., Nick P., Riemann M.	Salt-inducible expression of OsJAZ8 improves resilience against salt-stress.	BMC Plant Biol.	18(1)	311	2018		
46481	30423990	Zhang C., Shinwari K.I., Luo L., Zheng L.	<i>OsYSL13</i> Is Involved in Iron Distribution in Rice.	Int J Mol Sci	19(11)		2018		
46482	30697111	Liu S., Huang Y., Xu H., Zhao M., Xu Q., Li F.	Genetic enhancement of lodging resistance in rice due to the key cell wall polymer lignin, which affects stem characteristics.	Breed. Sci.	68(5)	508-515	2018		
46483	30499385	Li Y., Wang W., Wang T., Wouters M.A., Yin Y., Jiao Z., Ma L., Zhang F.	Regulation through MicroRNAs in Response to Low-Energy N+ Ion Irradiation in Oryza sativa.	Radiat. Res.	191(2)	189-200	2019		
46484	30427875	Ran Y., Chen H., Ruan D., Liu H., Wang S., Tang X., Wu W.	Identification of factors affecting rice yield gap in southwest China: An experimental study.	PLoS ONE	13(11)	e0206479	2018		
46485	30477211	Ng D.W., Abeysinghe J.K., Kamali M.	Regulating the Regulators: The Control of Transcription Factors in Plant Defense Signaling.	Int J Mol Sci	19(12)		2018		
46486	30697112	Li J., Zhou J., Xu P., Deng X., Deng W., Zhang Y., Yang Y., Tao D.	Mapping five novel interspecific hybrid sterility loci between <i>Oryza sativa</i> and <i>Oryza meridionalis</i>.	Breed. Sci.	68(5)	516-523	2018		
46487	30597791	Yin H., Qi Z., Li M., Ahammed G.J., Chu X., Zhou J.	Selenium forms and methods of application differentially modulate plant growth, photosynthesis, stress tolerance, selenium content and speciation in Oryza sativa L.	Ecotoxicol. Environ. Saf.	169	911-917	2019		
46488	30458395	Shan S., Guo Z., Lei P., Wang Y., Li Y., Cheng W., Zhang M., Wu S., Yi H.	Simultaneous mitigation of tissue cadmium and lead accumulation in rice via sulfate-reducing bacterium.	Ecotoxicol. Environ. Saf.	169	292-300	2019		
46489	30483230	Carpenter S.C.D., Mishra P., Ghoshal C., Dash P.K., Wang L., Midha S., Laha G.S., Lore J.S., Kositratana W., Singh N.K., Singh K., Patil P.B., Oliva R., Patarapuwadol S., Bogdanove A.J., Rai R.	A Strain of an Emerging Indian <i>Xanthomonas oryzae</i> pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene <i>xa13</i> Without Inducing a Clade III <i>SWEET</i> Gene and Is Nearly Identical to a Recent Thai Isolate.	Front Microbiol	9	2703	2018		
46490	30465288	Zhao J., Yang W., Zhang S., Yang T., Liu Q., Dong J., Fu H., Mao X., Liu B.	Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collection.	Rice (N Y)	11(1)	61	2018		
46491	30463331	Chen M., Yang Z., Liu J., Zhu T., Wei X., Fan H., Wang B.	Adaptation Mechanism of Salt Excluders under Saline Conditions and Its Applications.	Int J Mol Sci	19(11)		2018		
46492	30524455	Peng Y., Hou F., Bai Q., Xu P., Liao Y., Zhang H., Gu C., Deng X., Wu T., Chen X., Ali A., Wu X.	Rice calcineurin B-like protein-interacting protein kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets.	Front Plant Sci	9	1661	2018		
46493	30956424	Kumari R., Kumar P., Sharma V.K., Kumar H.	Seedling stage salt stress response specific characterization of genetic polymorphism and validation of SSR markers in rice.	Physiol Mol Biol Plants	25(2)	407-419	2019		
46494	30498660	Wang T., Song H., Zhang B., Lu Q., Liu Z., Zhang S., Guo R., Wang C., Zhao Z., Liu J., Peng R.	Genome-wide identification, characterization, and expression analysis of superoxide dismutase (SOD) genes in foxtail millet (<i>Setaria italica</i> L.).	3 Biotech	8(12)	486	2018		
46495	30642467	Banik A., Dash G.K., Swain P., Kumar U., Mukhopadhyay S.K., Dangar T.K.	Application of rice (Oryza sativa L.) root endophytic diazotrophic Azotobacter sp. strain Avi2 (MCC 3432) can increase rice yield under green house and field condition.	Microbiol. Res.	219	56-65	2019		
46496	30032266	Tabara M., Ohtani M., Kanekatsu M., Moriyama H., Fukuhara T.	Size Distribution of Small Interfering RNAs in Various Organs at Different Developmental Stages is Primarily Determined by the Dicing Activity of Dicer-Like Proteins in Plants.	Plant Cell Physiol.	59(11)	2228-2238	2018		
46497	30444467	Chen X., Jia Y., Wu B.M.	Evaluation of Rice Responses to the Blast Fungus Magnaporthe oryzae at Different Growth Stages.	Plant Dis.	103(1)	132-136	2019		
46498	30345786	Ju X.G., Zhang Y., Lian F.Y., Fu M.X.	Quick Test for Transgenic Components in Rice Using Terahertz Spectra.	Appl Spectrosc	73(2)	171-181	2019		
46499	30299556	Ye T., Yin X., Yu L., Zheng S.J., Cai W.J., Wu Y., Feng Y.Q.	Metabolic analysis of the melatonin biosynthesis pathway using chemical labeling coupled with liquid chromatography-mass spectrometry.	J. Pineal Res.	66(1)	e12531	2019		
46500	30465094	Saika H., Mori A., Endo M., Toki S.	Targeted deletion of rice retrotransposon Tos17 via CRISPR/Cas9.	Plant Cell Rep.	38(4)	455-458	2019		
46501	30393420	Horgan F.G., Bernal C.C., Vu Q., Almazan M.L.P., Ramal A.F., Yasui H., Fujita D.	Virulence adaptation in a rice leafhopper: Exposure to ineffective genes compromises pyramided resistance.	Crop Prot.	113	40-47	2018		
46502	30497392	Zhang H., Ali A., Hou F., Wu T., Guo D., Zeng X., Wang F., Zhao H., Chen X., Xu P., Wu X.	Effects of ploidy variation on promoter DNA methylation and gene expression in rice (Oryza sativa L.).	BMC Plant Biol.	18(1)	314	2018		
46503	30473723	Kanaoka Y., Kuniyoshi D., Inada E., Koide Y., Okamoto Y., Yasui H., Kishima Y.	Anther culture in rice proportionally rescues microspores according to gametophytic gene effect and enhances genetic study of hybrid sterility.	Plant Methods	14	102	2018		
46504	30499032	Cao P., Ren Y., Liu X., Zhang T., Zhang P., Xiao L., Zhang F., Liu S., Jiang L., Wan J.	Purine nucleotide biosynthetic gene GARS controls early chloroplast development in rice (Oryza sativa L.).	Plant Cell Rep.	38(2)	183-194	2019		
46505	30426495	Beier M.P., Fujita T., Sasaki K., Kanno K., Ohashi M., Tamura W., Konishi N., Saito M., Imagawa F., Ishiyama K., Miyao A., Yamaya T., Kojima S.	The urea transporter DUR3 contributes to rice production under nitrogen-deficient and field conditions.	Physiol Plant			2018	_	OsDUR3, DUR3 
46506	30804641	Tung Y.H., Ng L.T.	Effects of nitrogen fertilization rate on tocopherols, tocotrienols and gamma-oryzanol contents and enzymatic antioxidant activities in rice grains.	Physiol Mol Biol Plants	25(1)	189-195	2019		
46507	30483281	Li Q., Liu X., Zhang C., Jiang L., Jiang M., Zhong M., Fan X., Gu M., Liu Q.	Rice Soluble Starch Synthase I: Allelic Variation, Expression, Function, and Interaction With <i>Waxy</i>.	Front Plant Sci	9	1591	2018		
46508	30194091	Ogawa D., Nonoue Y., Tsunematsu H., Kanno N., Yamamoto T., Yonemaru J.I.	Discovery of QTL Alleles for grain shape in the JAPAN-MAGIC Rice Population Using Haplotype Information.	G3 (Bethesda)	8(11)	3559-3565	2018		
46509	30450718	Tian P., Liu J., Mou C., Shi C., Zhang H., Zhao Z., Lin Q., Wang J., Wang J., Zhang X., Guo X., Cheng Z., Zhu S., Ren Y., Lei C., Wang H., Wan J.	GW5-Like, a homolog of GW5, negatively regulates grain width, weight and salt resistance in rice.	J Integr Plant Biol			2018		
46510	30251262	Wu X., Ding C., Baerson S.R., Lian F., Lin X., Zhang L., Wu C., Hwang S.Y., Zeng R., Song Y.	The roles of jasmonate signalling in nitrogen uptake and allocation in rice (Oryza sativa L.).	Plant Cell Environ.	42(2)	659-672	2019		
46511	30519255	Cao J., Zhang M., Xiao J., Li X., Yuan M., Wang S.	Dominant and Recessive Major <i>R</i> Genes Lead to Different Types of Host Cell Death During Resistance to <i>Xanthomonas oryzae</i> in Rice.	Front Plant Sci	9	1711	2018		
46512	30404212	Hu Z., Cheng Y., Suzuki N., Guo X., Xiong H., Ogra Y.	Speciation of Selenium in Brown Rice Fertilized with Selenite and Effects of Selenium Fertilization on Rice Proteins.	Int J Mol Sci	19(11)		2018		
46513	30532759	Chamara B.S., Marambe B., Kumar V., Ismail A.M., Septiningsih E.M., Chauhan B.S.	Optimizing Sowing and Flooding Depth for Anaerobic Germination-Tolerant Genotypes to Enhance Crop Establishment, Early Growth, and Weed Management in Dry-Seeded Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	9	1654	2018		
46514	30628245	Lin X.B., Zhou L.J., Wang H.M., Liu H., Wu L., Yu Y., Hu M., He B., Zhou Q.H., Huang Q.R.	[Accumulation of Heavy Metals in Different Rice Varieties].	Huan Jing Ke Xue	39(11)	5198-5206	2018		
46515	30804632	?elik ?., ?ak?r BC., Atak ?.	Identification of the antioxidant defense genes which may provide enhanced salt tolerance in <i>Oryza sativa</i> L.	Physiol Mol Biol Plants	25(1)	85-99	2019		
46516	30423513	Qingqing H., Yiyun L., Xu Q., Lijie Z., Xuefeng L., Yingming X.	Selenite mitigates cadmium-induced oxidative stress and affects Cd uptake in rice seedlings under different water management systems.	Ecotoxicol. Environ. Saf.	168	486-494	2019		
46517	30386935	Zhu X., Yu L., Zhang M., Xu Z., Yao Z., Wu Q., Du X., Li J.	Design, synthesis and biological activity of hydroxybenzoic acid ester conjugates of phenazine-1-carboxylic acid.	Chem Cent J	12(1)	111	2018		
46518	30524456	Scafaro A.P., Atwell B.J., Muylaert S., Reusel B.V., Ruiz G.A., Rie J.V., Gall? A.	A Thermotolerant Variant of Rubisco activase From a Wild Relative Improves Growth and Seed Yield in Rice Under Heat Stress.	Front Plant Sci	9	1663	2018		
46519	30347433	Ivanov S., Harrison M.J.	Accumulation of phosphoinositides in distinct regions of the periarbuscular membrane.	New Phytol.	221(4)	2213-2227	2019		
46520	30465251	Wang X., Fu X., Yan J., Wang A., Wang M., Chen M., Yang C., Song Y.	Design and synthesis of novel 2-(6-thioxo-1,3,5-thiadiazinan-3-yl)-N'-phenylacethydrazide derivatives as potential fungicides.	Mol. Divers.			2018		
46521	30410018	Roth R., Chiapello M., Montero H., Gehrig P., Grossmann J., O'Holleran K., Hartken D., Walters F., Yang S.Y., Hillmer S., Schumacher K., Bowden S., Craze M., Wallington E.J., Miyao A., Sawers R., Martinoia E., Paszkowski U.	A rice Serine/Threonine receptor-like kinase regulates arbuscular mycorrhizal symbiosis at the peri-arbuscular membrane.	Nat Commun	9(1)	4677	2018		
46522	30429528	Gu X.Y., Pipatpongpinyo W., Zhang L., Zhou Y., Ye H., Feng J.	Two Contrasting Patterns and Underlying Genes for Coadaptation of seed dormancy and flowering time in Rice.	Sci Rep	8(1)	16813	2018		
46523	30465064	Qin G., Nguyen H.M., Luu S.N., Wang Y., Zhang Z.	Construction of introgression lines of Oryza rufipogon and evaluation of important agronomic traits.	Theor. Appl. Genet.	132(2)	543-553	2019		
46524	30504850	Letuma P., Arafat Y., Waqas M., Lin F., Lin W., Zhang Y., Masita M., Fan K., Li Z., Lin W.	Gene mutation associated with esl mediates shifts on fungal community composition in rhizosphere soil of rice at grain-filling stage.	Sci Rep	8(1)	17521	2018		
46525	30503791	Liu H., Chen X., Song L., Li K., Zhang X., Liu S., Qin Y., Li P.	Polysaccharides from Grateloupia filicina enhance tolerance of rice seeds (Oryza sativa L.) under salt stress.	Int. J. Biol. Macromol.	124	1197-1204	2019		
46526	30275171	Huang Z., Kelly S., Matsuo R., Li L.F., Li Y., Olsen K.M., Jia Y., Caicedo A.L.	The Role of Standing Variation in the Evolution of Weedines Traits in South Asian Weedy Rice (<i>Oryza</i> spp.).	G3 (Bethesda)	8(11)	3679-3690	2018		
46527	30507965	Ma Y., Yang X., Huan X., Gao Y., Wang W., Li Z., Ma Z., Perry L., Sun G., Jiang L., Jin G., Lu H.	Multiple indicators of rice remains and the process of rice domestication: A case study in the lower Yangtze River region, China.	PLoS ONE	13(12)	e0208104	2018		
46528	30656201	Wu Y., Mirzaei M., Atwell B.J., Haynes P.A.	Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery.	Data Brief	22	697-702	2019		
46529	30531945	Xiang H., Okamura H., Kezuka Y., Katoh E.	Physical and thermodynamic characterization of the rice gibberellin receptor/gibberellin/DELLA protein complex.	Sci Rep	8(1)	17719	2018		
46530	30622552	Jin J., Long W., Wang L., Liu X., Pan G., Xiang W., Li N., Li S.	QTL Mapping of Seed Vigor of Backcross Inbred Lines Derived From <i>Oryza longistaminata</i> Under Artificial Aging.	Front Plant Sci	9	1909	2018		
46531	30517137	F?vero Peixoto-Junior R., Mara de Andrade L., Dos Santos Brito M., Macedo Nobile P., Palma Boer Martins A., Domingues Carlin S., Vasconcelos Ribeiro R., de Souza Goldman MH., Neb? Carlos de Oliveira JF., Vargas de Oliveira Figueira A., Creste S.	Overexpression of ScMYBAS1 alternative splicing transcripts differentially impacts biomass accumulation and drought tolerance in rice transgenic plants.	PLoS ONE	13(12)	e0207534	2018		
46532	30577553	Su H., Chu Y., Bai J., Gong L., Huang J., Xu W., Zhang J., Qiu X., Xu J., Huang Z.	Genome-Wide Identification and Comparative Analysis for OPT Family Genes in <i>Panax ginseng</i> and Eleven Flowering Plants.	Molecules	24(1)		2018		
46533	30594151	Zhang Y., Fang J., Wu X., Dong L.	Na+/K+ Balance and Transport Regulatory Mechanisms in Weedy and Cultivated Rice (Oryza sativa L.) Under Salt Stress.	BMC Plant Biol.	18(1)	375	2018		
46534	30536828	Zhang J., Lu Z., Pan Y., Ren T., Cong R., Lu J., Li X.	Potassium deficiency aggravates yield loss in rice by restricting the translocation of non-structural carbohydrates under Sarocladium oryzae infection condition.	Physiol Plant			2018		
46535	30544094	E Y., Meng J., Hu H., Cheng D., Zhu C., Chen W.	Effects of organic molecules from biochar-extracted liquor on the growth of rice seedlings.	Ecotoxicol. Environ. Saf.	170	338-345	2019		
46536	30602689	Luo L., Qin R., Liu T., Yu M., Yang T., Xu G.	<i>OsASN1</i> Plays a Critical Role in Asparagine-Dependent Rice Development.	Int J Mol Sci	20(1)		2018		
46537	30619433	Ulfstedt M., Hu G.Z., Eklund D.M., Ronne H.	The Ability of a Charophyte Alga Hexokinase to Restore Glucose Signaling and Glucose Repression of Gene Expression in a Glucose-Insensitive <i>Arabidopsis</i> Hexokinase Mutant Depends on Its Catalytic Activity.	Front Plant Sci	9	1887	2018		
46538	30514218	Ding Y., Wang Z., Ren M., Zhang P., Li Z., Chen S., Ge C., Wang Y.	Iron and callose homeostatic regulation in rice roots under low phosphorus.	BMC Plant Biol.	18(1)	326	2018		
46539	30592999	Okpala N.E., Mo Z., Duan M., Tang X.	The genetics and biosynthesis of 2-acetyl-1-pyrroline in fragrant rice.	Plant Physiol. Biochem.	135	272-276	2019		
46540	30567971	van der Horst S., Snel B., Hanson J., Smeekens S.	Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in <i>Arabidopsis thaliana</i>.	RNA	25(3)	292-304	2019		
46541	30581451	Crofts N., Iizuka Y., Abe N., Miura S., Kikuchi K., Matsushima R., Fujita N.	Rice Mutants Lacking Starch Synthase I or Branching Enzyme IIb Activity Altered Starch Biosynthetic Protein Complexes.	Front Plant Sci	9	1817	2018		
46542	30595833	Zhao Y., Zhong L., Zhou K., Song Z., Chen J., Rong J.	Seed characteristic variations and genetic structure of wild <i>Zizania latifolia</i> along a latitudinal gradient in China: implications for neo-domestication as a grain crop.	AoB Plants	10(6)	ply072	2018		
46543	30514878	Islam S.M.M., Gaihre Y.K., Biswas J.C., Singh U., Ahmed M.N., Sanabria J., Saleque M.A.	Nitrous oxide and nitric oxide emissions from lowland rice cultivation with urea deep placement and alternate wetting and drying irrigation.	Sci Rep	8(1)	17623	2018		
46544	30168780	Rao W., Zheng X., Liu B., Guo Q., Guo J., Wu Y., Shangguan X., Wang H., Wu D., Wang Z., Hu L., Xu C., Jiang W., Huang J., Shi S., He G.	Secretome Analysis and In Planta Expression of Salivary Proteins Identify Candidate Effectors from the Brown Planthopper Nilaparvata lugens.	Mol. Plant Microbe Interact.	32(2)	227-239	2019		
46545	30160362	Miao J., Yang Z., Zhang D., Wang Y., Xu M., Zhou L., Wang J., Wu S., Yao Y., Du X., Gu F., Gong Z., Gu M., Liang G., Zhou Y.	Mutation of RGG2, which encodes a type B heterotrimeric G protein gamma subunit, increases grain size.and yield production in rice.	Plant Biotechnol. J.	17(3)	650-664	2019	RGB1,RGG2	OsWD40-80, RGbeta1,
46546	30584948	Xia H., Luo Z., Xiong J., Ma X., Lou Q., Wei H., Qiu J., Yang H., Liu G., Fan L., Chen L., Luo L.	Bi-directional Selection in Upland Rice Leads to Its Adaptive Differentiation from Lowland Rice in Drought Resistance and Productivity.	Mol Plant	12(2)	170-184	2019		
46547	30658287	Das P., Manna I., Sil P., Bandyopadhyay M., Biswas A.K.	Exogenous silicon alters organic acid production and enzymatic activity of TCA cycle in two NaCl stressed indica rice cultivars.	Plant Physiol. Biochem.	136	76-91	2019		
46548	30559100	Xin G.W., Hu X.X., Wang K.J., Wang X.C.	[Cas9 protein variant VQR recognizes NGAC protospacer adjacent motif in rice].	Yi Chuan	40(12)	1112-1119	2018		
46549	30553449	Hui S., Hao M., Liu H., Xiao J., Li X., Yuan M., Wang S.	The group I GH3 family genes encoding JA-Ile synthetase act as positive regulator in the resistance of rice to Xanthomonas oryzae pv. oryzae.	Biochem. Biophys. Res. Commun.	508(4)	1062-1066	2019		
46550	30619416	Kim Y.S., Kim J.J., Park S.I., Diamond S., Boyd J.S., Taton A., Kim I.S., Golden J.W., Yoon H.S.	Expression of <i>OsTPX</i> Gene Improves Cellular Redox Homeostasis and Photosynthesis Efficiency in <i>Synechococcus elongatus</i> PCC 7942.	Front Plant Sci	9	1848	2018		
46551	30578452	Yichie Y., Brien C., Berger B., Roberts T.H., Atwell B.J.	Salinity tolerance in Australian wild Oryza species varies widely and matches that observed in O. sativa.	Rice (N Y)	11(1)	66	2018		
46552	30558149	Liu T., Liu X., Liu M., Wu L.	Classification of Rice Heavy Metal Stress Levels Based on Phenological Characteristics Using Remote Sensing Time-Series Images and Data Mining Algorithms.	Sensors (Basel)	18(12)		2018		
46553	30568666	Begcy K., Sandhu J., Walia H.	Transient Heat Stress During Early Seed Development Primes Germination and Seedling Establishment in Rice.	Front Plant Sci	9	1768	2018		
46554	30541444	Li Y., Li X., Fu D., Wu C.	Panicle Morphology Mutant 1 (PMM1) determines the inflorescence architecture of rice by controlling brassinosteroid biosynthesis.	BMC Plant Biol.	18(1)	348	2018	LAX1,DWARF4,MCM2,D61,MCM3,BU1,MADS47,D11	lax, lax(lx), LAX1, lx, OsbHLH123, OsLAX1,OsDWARF4, osdwarf4, OsDWF4, DWF4, CYP90B2, OsCYP90B2, D4, OsD4,OsMCM2,d61*, dwf42, d61, OsBRI1, OSBRI1, BRI1, Os BRI1, Osbri1,OsMCM3,ILI4, OsILI4 , OsBU1, BU1/ILI4, OsbHLH172, bHLH172,OsMADS47, OsMDP1, MDP, MDP1,d11(d8), dwf10, d8, D11/CYP724B1, d11, CYP724B1, GNS4, OsD11, PMM1, OsPMM1, PMM1/D11, NBG4, OsCPB1, CPB1, CPB1/D11
46555	30521000	Kuang Z., Wang Y., Li L., Yang X.	miRDeep-P2: accurate and fast analysis of the microRNA transcriptome in plants.	Bioinformatics			2018		
46556	30560465	Cobb J.N., Biswas P.S., Platten J.D.	Back to the future: revisiting MAS as a tool for modern plant breeding.	Theor. Appl. Genet.	132(3)	647-667	2019		
46557	30546027	Hamid Y., Tang L., Wang X., Hussain B., Yaseen M., Aziz M.Z., Yang X.	Immobilization of cadmium and lead in contaminated paddy field using inorganic and organic additives.	Sci Rep	8(1)	17839	2018		
46558	30417595	Jia X., Zhang Y., Zhang Q., Zhao Q., Traw M.B., Wang L., Tian D., Wang C., Yang S.	High-resolution insight into recombination events at the SD1 locus in rice.	Plant J.	97(4)	683-692	2019		
46559	30581670	Caddell D.F., Wei T., Sharma S., Oh M.H., Park C.J., Canlas P., Huber S.C., Ronald P.C.	Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>.	PeerJ	6	e6074	2018		
46560	30697406	Ullah Zaid I., Tang W., He J., Ullah Khan S., Hong D.	Association analysis uncovers the genetic basis of general combining ability of 11 yield-related traits in parents of hybrid rice.	AoB Plants	11(1)	ply077	2019		
46561	30519841	Zhang L., Nakagomi Y., Endo T., Teranishi M., Hidema J., Sato S., Higashitani A.	Divergent evolution of rice blast resistance Pi54 locus in the genus Oryza.	Rice (N Y)	11(1)	63	2018		
46562	30631334	Fukuda A., Hirose T., Aoki N., Kondo S., Yonekura M., Kataoka T., Ohto C., Nagano A.J.	Selection of Transcripts Affecting Initial Growth Rate of Rice Backcrossed Inbred Lines Using RNA Sequencing Data.	Front Plant Sci	9	1880	2018		
46563	30561011	Xiong Q.Q., Shen T.H., Zhong L., Zhu C.L., Peng X.S., He X.P., Fu J.R., Ouyang L.J., Bian J.M., Hu L.F., Sun X.T., Xu J., Zhou H.Y., He H.H., Chen X.R.	Comprehensive metabolomic, proteomic and physiological analyses of grain yield reduction in rice under abrupt drought-flood alternation stress.	Physiol Plant			2018		
46564	30622674	Subedi L., Baek S.H., Kim S.Y.	Genetically Engineered Resveratrol-Enriched Rice Inhibits Neuroinflammation in Lipopolysaccharide-Activated BV2 Microglia Via Downregulating mitogen-activated protein kinase-nuclear factor kappa B Signaling Pathway.	Oxid Med Cell Longev	2018	8092713	2018		
46565	31007364	Radanielson A.M., Gaydon D.S., Rahman Khan MM., Chaki A.K., Rahman M.A., Angeles O., Li T., Ismail A.	Varietal improvement options for higher rice productivity in salt affected areas using crop modelling.	Field Crops Res.	229	27-36	2018		
46566	30584728	DU YD., Shen P., Wang H., Tang X.R., Zhao H.	Impacts of climate change on climatic division for double cropping rice in Guangdong Pro-vince, China.	Ying Yong Sheng Tai Xue Bao	29(12)	4013-4021	2018		
46567	30599198	Dang Y., Liu M., Wu X.	Recombinant rice xylanase-inhibiting protein inhibits GH11 endo-xylanases through competitive inhibition.	Protein Expr. Purif.	156	17-24	2019		
46568	30578469	Lin H.A., Chen S.Y., Chang F.Y., Tung C.W., Chen Y.C., Shen W.C., Chen R.S., Wu C.W., Chung C.L.	Genome-wide association study of rice genes and loci conferring resistance to Magnaporthe oryzae isolates from Taiwan.	Botanical Studies	59(1)	32	2018		
46569	30584730	Huang X.C., Li Y., Ye Z.C., Bai Y.J., Liu Y.L., Zhang Y.R., Zhang W.A., Jiang T.M.	Occurrence characteristics of Echinochloa and its response to long-term fertilization in paddy fields of yellow soil.	Ying Yong Sheng Tai Xue Bao	29(12)	4029-4036	2018		
46570	30824055	Elakhdar A., Ushijima T., Fukuda M., Yamashiro N., Kawagoe Y., Kumamaru T.	eukaryotic peptide chain release factor 1 participates in translation termination of specific cysteine-poor prolamines in rice endosperm.	Plant Sci.	281	223-231	2019		
46571	30622550	Harun-Or-Rashid M., Kim H.J., Yeom S.I., Yu H.A., Manir M.M., Moon S.S., Kang Y.J., Chung Y.R.	<i>Bacillus velezensis</i> YC7010 Enhances Plant Defenses Against Brown Planthopper Through Transcriptomic and Metabolic Changes in Rice.	Front Plant Sci	9	1904	2018		
46572	30165687	Xing Y., Guo S., Chen X., Du D., Liu M., Xiao Y., Zhang T., Zhu M., Zhang Y., Sang X., He G., Wang N.	Nitrogen Metabolism is Affected in the Nitrogen-Deficient Rice Mutant ESL4 with a Calcium-Dependent Protein Kinase Gene Mutation.	Plant Cell Physiol.	59(12)	2512-2525	2018		
46573	30558185	Zou X., Shao J., Wang Q., Chen P., Zhu Y., Yin C.	Supraoptimal Cytokinin Content Inhibits Rice seminal root Growth by Reducing root meristem Size and Cell Length via Increased Ethylene Content.	Int J Mol Sci	19(12)		2018		
46574	30603810	Ma X., Zhang J., Han B., Tang J., Cui D., Han L.	FLA, which encodes a homolog of UBP, is required for chlorophyll accumulation and development of lemma and palea in rice.	Plant Cell Rep.	38(3)	321-331	2019	UBP1-1,_,UBP9-1,UBP3,UBP4-6,UBP2-1,UBP9-2,UBP14-2,UBP12,UBP2-3,SPO11-5,_,UBP1-8,UBP1-5,_,UBP6,UBP7-3,UBP1-2,UBP5-3,UBP2-2,UBP1-7,UBP8,LG1,UBP4-2,UBP11,UBP7-5,_,UBP7-7,UBP1-4,UBP4-8,UBP4-4,UBP7-2,UBP7-6,FLA,UBP1-9	OsUBP1-1, OsUBP29, UBP29,OsM13, M13, OsM13a, OsUBP5-4, UBP5-4, OsUBP12, UBP12,OsUBP9-1, OsUBP22, UBP22,OsUBP3, OsUBP6, UBP6,OsUBP4-6, OsUBP11, UBP11,OsUBP2-1, OsUBP18, UBP18,OsUBP9-2, OsUBP34, UBP34,OsUBP14-2, OsUBP24, UBP24,OsUBP12, OsUBP27, UBP27,OsUBP2-3, OsUBP3, UBP3,OsSPO11-5, OsSPO11-5C, SPO11-1A, SPO11-1B, SPO11-1C, SPO11-1D, OsUBP13, UBP13, OsUBP35, UBP35,OsM2, M2, OsM2a, OsUBP5-1, UBP5-1, OsUBP7, UBP7,OsUBP1-8, OsUBP33, UBP33,OsUBP1-5, OsUBP31, UBP31,OsBIP110, BIP110, OsUBP7-4, UBP7-4, OsUBP28, UBP28,OsUBP6, OsUBP14, UBP14,OsUBP7-3, OsUBP25, UBP25,OsUBP1-2, OsUBP30, UBP30,OsUBP5-3, OsUBP21, UBP21,OsUBP2-2, OsUBP4, UBP4,OsUBP1-7, OsUBP32, UBP32,OsUBP8, OsUBP20, UBP20,OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1,OsUBP4-2, OsUBP10, UBP10,OsUBP11, OsUBP26, UBP26,OsUBP7-5, OsUBP19, UBP19,OsM5, M5, OsM5a, OsUBP5-2, UBP5-2, OsUBP13, UBP13,OsUBP7-7, OsUBP16, UBP16,OsUBP1-4, OsUBP2, UBP2,OsUBP4-8, OsUBP8, UBP8,OsUBP4-4, OsUBP9, UBP9,OsUBP7-2, OsUBP23, UBP23,OsUBP7-6, OsUBP17, UBP17,UBP4-5, OsUBP4-5, OsUBP5, UBP5, OsFLA,OsUBP1-9, OsUBP1, UBP1
46575	30610223	Wang C., Liu Q., Shen Y., Hua Y., Wang J., Lin J., Wu M., Sun T., Cheng Z., Mercier R., Wang K.	Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes.	Nat. Biotechnol.	37(3)	283-286	2019		
46576	30835768	Yadav M.K., Aravindan S., Ngangkham U., Raghu S., Prabhukarthikeyan S.R., Keerthana U., Marndi B.C., Adak T., Munda S., Deshmukh R., Pramesh D., Samantaray S., Rath P.C.	Correction: Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers.	PLoS ONE	14(3)	e0213566	2019		
46577	30650107	Nagaraju M., Kumar S.A., Reddy P.S., Kumar A., Rao D.M., Kavi Kishor PB.	Genome-scale identification, classification, and tissue specific expression analysis of late embryogenesis abundant (LEA) genes under abiotic stress conditions in Sorghum bicolor L.	PLoS ONE	14(1)	e0209980	2019		
46578	31001294	Jamil M., Kountche B.A., Haider I., Wang J.Y., Aldossary F., Zarban R.A., Jia K.P., Yonli D., Shahul Hameed UF., Takahashi I., Ota T., Arold S.T., Asami T., Al-Babili S.	Methylation at the C-3' in D-Ring of Strigolactone Analogs Reduces Biological Activity in Root Parasitic Plants and Rice.	Front Plant Sci	10	353	2019		
46579	30729073	Cho K., Jo Y.M., Lim S.H., Kim J.Y., Han O., Lee J.Y.	Overexpressing wheat low-molecular-weight glutenin subunits in rice (<i>Oryza sativa</i> L. <i>japonica</i> cv. Koami) seeds.	3 Biotech	9(2)	49	2019		
46580	30621596	Anis G.B., Zhang Y., Islam A., Zhang Y., Cao Y., Wu W., Cao L., Cheng S.	RDWN6XB, a major quantitative trait locus positively enhances root system architecture under nitrogen deficiency in rice.	BMC Plant Biol.	19(1)	12	2019		
46581	31134103	Lachagari V.B.R., Gupta R., Lekkala S.P., Mahadevan L., Kuriakose B., Chakravartty N., Mohan Katta AVSK., Santhosh S., Reddy A.R., Thomas G.	Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (<i>Oryza sativa</i> ssp. <i>indica</i> cv. Purpleputtu).	Front Plant Sci	10	513	2019		
46582	30669545	Tsaneva M., De Schutter K., Verstraeten B., Van Damme EJM.	Lectin Sequence Distribution in QTLs from Rice (Oryza sativa) Suggest A Role in Morphological Traits and Stress Responses.	Int J Mol Sci	20(2)		2019		
46583	30616154	Xie Y., Li X., Huang X., Han S., Amombo E., Wassie M., Chen L., Fu J.	Characterization of the Cd-resistant fungus Aspergillus aculeatus and its potential for increasing the antioxidant activity and photosynthetic efficiency of rice.	Ecotoxicol. Environ. Saf.	171	373-381	2019		
46584	30604324	Passricha N., Saifi S.K., Kharb P., Tuteja N.	Marker-free transgenic rice plant overexpressing pea LecRLK imparts salinity tolerance by inhibiting sodium accumulation.	Plant Mol. Biol.	99(3)	265-281	2019		
46585	30501607	Lang C., Karunairetnam S., Lo K.R., Kralicek A.V., Crowhurst R.N., Gleave A.P., MacDiarmid RM., Ingram J.R.	Common Variants of the Plant microRNA-168a Exhibit Differing Silencing Efficacy for Human Low-Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1).	Microrna	8(2)	166-170	2019		
46586	30626113	Li W., Jia Y., Liu F., Wang F., Fan F., Wang J., Zhu J., Xu Y., Zhong W., Yang J.	Integration Analysis of Small RNA and Degradome Sequencing Reveals MicroRNAs Responsive to <i>Dickeya zeae</i> in Resistant Rice.	Int J Mol Sci	20(1)		2019		
46587	31059518	Sircar S., Parekh N.	Meta-analysis of drought-tolerant genotypes in Oryza sativa: A network-based approach.	PLoS ONE	14(5)	e0216068	2019		
46588	30663245	Zhang Y., Zhang Z., Sun X., Zhu X., Li B., Li J., Guo H., Chen C., Pan Y., Liang Y., Xu Z., Zhang H., Li Z.	Natural alleles of GLA for grain length and awn development were differently domesticated in rice subspecies japonica and indica.	Plant Biotechnol. J.			2019	RAE2 ,LABA1,AN1	OsEPFL1, EPFL1, GAD1, OsGAD1, OsRAE2, GLA, OsGLA, GAD1/RAE2,LOGL6, OsLOGL6, An-2,An-1, OsbHLH093, RAE1, An-1/RAE1, RAE1/An-1
46589	30846992	Hussain S., Bai Z., Huang J., Cao X., Zhu L., Zhu C., Khaskheli M.A., Zhong C., Jin Q., Zhang J.	1-Methylcyclopropene Modulates Physiological, Biochemical, and Antioxidant Responses of Rice to Different Salt Stress Levels.	Front Plant Sci	10	124	2019		
46590	30988947	Yin D., Selle P.H., Moss A.F., Wang Y., Dong X., Xiao Z., Guo Y., Yuan J.	Influence of starch sources and dietary protein levels on intestinal functionality and intestinal mucosal amino acids catabolism in broiler chickens.	J Anim Sci Biotechnol	10	26	2019		
46591	30715138	Xuan Y.H., Kumar V., Han X., Kim S.H., Jeong J.H., Kim C.M., Gao Y., Han C.D.	CBL-INTERACTING PROTEIN KINASE 9 regulates ammonium-dependent root growth downstream of IDD10 in rice (Oryza sativa).	Ann. Bot.			2019		
46592	31142188	Kajendran K., Chandrasekharan N.V., Hettiarachchi C.M., Sulochana Wijesundera WS.	Molecular characterization and expression of alpha-gliadin genes from wheat cultivar Dacke in Bg 250 rice variety.	GM Crops Food	10(2)	102-114	2019		
46593	30833948	Chintalapati P., Balakrishnan D., Venu Gopal Nammi TV., Javvaji S., Muthusamy S.K., Lella Venkata SR., Neelamraju S., Katti G.	Phenotyping and Genotype ~ Environment Interaction of Resistance to Leaffolder, <i>Cnaphalocrocis medinalis</i> Guenee (Lepidoptera: Pyralidae) in Rice.	Front Plant Sci	10	49	2019		
46594	30671309	Wang T., Li Z., Chen X., Long X.E.	Effects of nickel and cobalt on methane production and methanogen abundance and diversity in paddy soil.	PeerJ	7	e6274	2019		
46595	30643094	Kawagishi H.	Are fairy chemicals a new family of plant hormones?	Proc. Jpn. Acad., Ser. B, Phys. Biol. Sci.	95(1)	29-38	2019		
46596	30648400	Meeinkuirt W., Phusantisampan T., Saengwilai P.	root system architecture influencing cadmium accumulation in rice (Oryza sativa L.).	Int J Phytoremediation	21(1)	19-26	2019		
46597	30626062	Zhang L., Peng Y., Li J., Tian X., Chen Z.	OsMGT1 Confers Resistance to Magnesium Deficiency By Enhancing the Import of Mg in Rice.	Int J Mol Sci	20(1)		2019		
46598	30659066	Tian L., Chou H.L., Zhang L., Okita T.W.	Targeted Endoplasmic Reticulum Localization of Storage Protein mRNAs Requires the RNA-binding protein RBP-L.	Plant Physiol.	179(3)	1111-1131	2019		
46599	30710646	Sun J., Ma D., Tang L., Zhao M., Zhang G., Wang W., Song J., Li X., Liu Z., Zhang W., Xu Q., Zhou Y., Wu J., Yamamoto T., Dai F., Lei Y., Li S., Zhou G., Zheng H., Xu Z., Chen W.	Population Genomic Analysis and De Novo Assembly Reveal the Origin of Weedy Rice as an Evolutionary Game.	Mol Plant	12(5)	632-647	2019		
46600	30701331	Lakra N., Kaur C., Singla-Pareek SL., Pareek A.	Mapping the 'early salinity response' triggered proteome adaptation in contrasting rice genotypes using iTRAQ approach.	Rice (N Y)	12(1)	3	2019		
46601	30623558	Beasley J.T., Bonneau J.P., S?nchez-Palacios JT., Moreno-Moyano LT., Callahan D.L., Tako E., Glahn R.P., Lombi E., Johnson A.A.T.	Metabolic engineering of bread wheat improves grain iron concentration and bioavailability.	Plant Biotechnol. J.			2019		
46602	30972991	Ai Nio S., Siahaan R., Peter Mantilen Ludong D.	Partial submergence tolerance in Rice (<i>Oryza sativa</i> L.) Cultivated in North Sulawesi at the Vegetative Phase.	Pak. J. Biol. Sci.	22(2)	95-102	2019		
46603	30549178	Anacleto R., Badoni S., Parween S., Butardo V.M., Misra G., Cuevas R.P., Kuhlmann M., Trinidad T.P., Mallillin A.C., Acuin C., Bird A.R., Morell M.K., Sreenivasulu N.	Integrating a genome-wide association study with a large-scale transcriptome analysis to predict genetic regions influencing the glycaemic index and texture in rice.	Plant Biotechnol. J.	17(7)	1261-1275	2019		
46604	31139243	Sun D., Cen H., Weng H., Wan L., Abdalla A., El-Manawy AI., Zhu Y., Zhao N., Fu H., Tang J., Li X., Zheng H., Shu Q., Liu F., He Y.	Using hyperspectral analysis as a potential high throughput phenotyping tool in GWAS for protein content of rice quality.	Plant Methods	15	54	2019		
46605	31105658	Fang A., Gao H., Zhang N., Zheng X., Qiu S., Li Y., Zhou S., Cui F., Sun W.	A Novel Effector Gene <i>SCRE2</i> Contributes to Full Virulence of <i>Ustilaginoidea virens</i> to Rice.	Front Microbiol	10	845	2019		
46606	30694432	Alencar VTCB., Lobo A.K.M., Carvalho F.E.L., Silveira J.A.G.	High ammonium supply impairs photosynthetic efficiency in rice exposed to excess light.	Photosyn. Res.	140(3)	321-335	2019		
46607	30705339	Ji S.H., Kim J.S., Lee C.H., Seo H.S., Chun S.C., Oh J., Choi E.H., Park G.	Enhancement of vitality and activity of a plant growth-promoting bacteria (PGPB) by atmospheric pressure non-thermal plasma.	Sci Rep	9(1)	1044	2019		
46608	30955410	Fu W., Wang C., Xu W., Zhu P., Lu Y., Wei S., Wu X., Wu Y., Zhao Y., Zhu S.	Unintended effects of transgenic rice revealed by transcriptome and metabolism.	GM Crops Food	10(1)	20-34	2019		
46609	30706248	Li X., Tao Q., Miao J., Yang Z., Gu M., Liang G., Zhou Y.	Evaluation of differential qPE9-1/DEP1 protein domains in rice grain length and weight variation.	Rice (N Y)	12(1)	5	2019		
46610	30466149	Zhang L., Hu B., Deng K., Gao X., Sun G., Zhang Z., Li P., Wang W., Li H., Zhang Z., Fu Z., Yang J., Gao S., Li L., Yu F., Li Y., Ling H., Chu C.	NRT1.1B improves selenium concentrations in rice grains by facilitating selenomethinone translocation.	Plant Biotechnol. J.	17(6)	1058-1068	2019		
46611	31191579	Zhu X.F., Zhang X.L., Dong X.Y., Shen R.F.	Carbon Dioxide Improves Phosphorus Nutrition by Facilitating the Remobilization of Phosphorus From the Shoot Cell Wall in Rice (<i>Oryza sativa</i>).	Front Plant Sci	10	665	2019		
46612	30669971	Lekklar C., Pongpanich M., Suriya-Arunroj D., Chinpongpanich A., Tsai H., Comai L., Chadchawan S., Buaboocha T.	Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand.	BMC Genomics	20(1)	76	2019		
46613	31231401	Aung M.S., Masuda H., Nozoye T., Kobayashi T., Jeon J.S., An G., Nishizawa N.K.	Nicotianamine Synthesis by <i>OsNAS3</i> Is Important for Mitigating Iron Excess Stress in Rice.	Front Plant Sci	10	660	2019		
46614	30900505	Hui S., Zhang M., Hao M., Yuan M.	Rice group I GH3 gene family, positive regulators of bacterial pathogens.	Plant Signal Behav	14(5)	e1588659	2019		
46615	30658570	Zhang X., Yin F., Xiao S., Jiang C., Yu T., Chen L., Ke X., Zhong Q., Cheng Z., Li W.	Proteomic analysis of the rice (Oryza officinalis) provides clues on molecular tagging of proteins for brown planthopper resistance.	BMC Plant Biol.	19(1)	30	2019		
46616	30699967	Islam M.S., Ontoy J., Subudhi P.K.	Meta-Analysis of Quantitative Trait Loci Associated with Seedling-Stage salt tolerance in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	8(2)		2019		
46617	30697219	Din M., Ming J., Hussain S., Ata-Ul-Karim ST., Rashid M., Tahir M.N., Hua S., Wang S.	Estimation of Dynamic Canopy Variables Using Hyperspectral Derived Vegetation Indices Under Varying N Rates at Diverse Phenological Stages of Rice.	Front Plant Sci	9	1883	2018		
46618	31134120	Yu J., Zhen X., Li X., Li N., Xu F.	Increased Autophagy of Rice Can Increase Yield and Nitrogen Use Efficiency (NUE).	Front Plant Sci	10	584	2019		
46619	31024605	Lin C., Sauter M.	Polar Auxin Transport Determines Adventitious Root Emergence and Growth in Rice.	Front Plant Sci	10	444	2019		
46620	31214220	Li L., Ye L., Kong Q., Shou H.	A Vacuolar Membrane Ferric-Chelate Reductase, OsFRO1, Alleviates Fe Toxicity in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	10	700	2019		
46621	30565255	Li Z., Xiong X., Wang F., Liang J., Li J.F.	Gene disruption through base editing-induced messenger RNA missplicing in plants.	New Phytol.	222(2)	1139-1148	2019		
46622	30397802	Santos M.V., Cuevas R.P.O., Sreenivasulu N., Molina L.	Measurement of Rice Grain Dimensions and Chalkiness, and Rice Grain Elongation Using Image Analysis.	Methods Mol. Biol.	1892	99-108	2019		
46623	30907523	Zeng Q.B., Xu Y.Y., Tu C.L., Yu X., Yang J., Hong F.	[Biological exposure limits caused by co exposure to fluoride and arsenic based on Wnt signaling pathway].	Ying Yong Sheng Tai Xue Bao	30(1)	37-42	2019		
46624	30828418	Takaishi S., Saito S., Kamada M., Otori N., Kojima H., Ozawa K., Takaiwa F.	Evaluation of basophil activation caused by transgenic rice seeds expressing whole T cell epitopes of the major Japanese cedar pollen allergens.	Clin Transl Allergy	9	11	2019		
46625	30894866	Vemanna R.S., Bakade R., Bharti P., Kumar M.K.P., Sreeman S.M., Senthil-Kumar M., Makarla U.	Cross-Talk Signaling in Rice During Combined Drought and Bacterial Blight Stress.	Front Plant Sci	10	193	2019		
46626	30623600	Li S., Shen L., Hu P., Liu Q., Zhu X., Qian Q., Wang K., Wang Y.	Developing disease-resistant thermosensitive male sterile rice by multiplex gene editing.	J Integr Plant Biol			2019		
46627	31194746	Frouin J., Labeyrie A., Boisnard A., Sacchi G.A., Ahmadi N.	Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains.	PLoS ONE	14(6)	e0217516	2019		
46628	30753479	Sureshkumar V., Dutta B., Kumar V., Prakash G., Mishra D.C., Chaturvedi K.K., Rai A., Sevanthi A.M., Solanke A.U.	RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes.	Database (Oxford)	2019		2019		
46629	30856225	Zhao M., Zhao M., Gu S., Sun J., Ma Z., Wang L., Zheng W., Xu Z.	DEP1 is involved in regulating the carbon-nitrogen metabolic balance to affect grain yield and quality in rice (Oriza sativa L.).	PLoS ONE	14(3)	e0213504	2019		
46630	30612175	Ye H., Lu Q., Duan N., Wang Z.	GO-amplified fluorescence polarization assay for high-sensitivity detection of aflatoxin B1 with low dosage aptamer probe.	Anal Bioanal Chem	411(5)	1107-1115	2019		
46631	30995267	Liao Z.X., Ni Z., Wei X.L., Chen L., Li J.Y., Yu Y.H., Jiang W., Jiang B.L., He Y.Q., Huang S.	Dual RNA-seq of Xanthomonas oryzae pv. oryzicola infecting rice reveals novel insights into bacterial-plant interaction.	PLoS ONE	14(4)	e0215039	2019		
46632	30643123	Seto Y., Yasui R., Kameoka H., Tamiru M., Cao M., Terauchi R., Sakurada A., Hirano R., Kisugi T., Hanada A., Umehara M., Seo E., Akiyama K., Burke J., Takeda-Kamiya N., Li W., Hirano Y., Hakoshima T., Mashiguchi K., Noel J.P., Kyozuka J., Yamaguchi S.	Strigolactone perception and deactivation by a hydrolase receptor DWARF14.	Nat Commun	10(1)	191	2019		
46633	31134118	Wu L.B., Holtkamp F., Wairich A., Frei M.	Potassium Ion Channel Gene <i>OsAKT1</i> Affects Iron Translocation in Rice Plants Exposed to Iron Toxicity.	Front Plant Sci	10	579	2019		
46634	30701393	Hoang G.T., Van Dinh L., Nguyen T.T., Ta N.K., Gathignol F., Mai C.D., Jouannic S., Tran K.D., Khuat T.H., Do V.N., Lebrun M., Courtois B., Gantet P.	Genome-wide Association Study of a?Panel of Vietnamese Rice Landraces Reveals New QTLs for Tolerance to Water Deficit During the Vegetative Phase.	Rice (N Y)	12(1)	4	2019		
46635	30696055	Hussain S., Zhu C., Bai Z., Huang J., Zhu L., Cao X., Nanda S., Hussain S., Riaz A., Liang Q., Wang L., Li Y., Jin Q., Zhang J.	iTRAQ-Based Protein Profiling and Biochemical Analysis of Two Contrasting Rice Genotypes Revealed Their Differential Responses to Salt Stress.	Int J Mol Sci	20(3)		2019		
46636	30704461	Malzahn A.A., Tang X., Lee K., Ren Q., Sretenovic S., Zhang Y., Chen H., Kang M., Bao Y., Zheng X., Deng K., Zhang T., Salcedo V., Wang K., Zhang Y., Qi Y.	Application of CRISPR-Cas12a temperature sensitivity for improved genome editing in rice, maize, and Arabidopsis.	BMC Biol.	17(1)	9	2019		
46637	30673751	Yadav M.K., Aravindan S., Ngangkham U., Raghu S., Prabhukarthikeyan S.R., Keerthana U., Marndi B.C., Adak T., Munda S., Deshmukh R., Pramesh D., Samantaray S., Rath P.C.	Blast resistance in Indian rice landraces: Genetic dissection by gene specific markers.	PLoS ONE	14(1)	e0211061	2019		
46638	30815004	Rodr?guez-Celma J., Chou H., Kobayashi T., Long T.A., Balk J.	Hemerythrin E3 Ubiquitin Ligases as Negative Regulators of Iron Homeostasis in Plants.	Front Plant Sci	10	98	2019		
46639	30689021	Zha M., Imran M., Wang Y., Xu J., Ding Y., Wang S.	Transcriptome analysis revealed the interaction among strigolactones, auxin, and cytokinin in controlling the shoot branching of rice.	Plant Cell Rep.	38(3)	279-293	2019		
46640	30930921	Wang R., Jiang G., Feng X., Nan J., Zhang X., Yuan Q., Lin S.	Updating the Genome of the Elite Rice Variety Kongyu131 to Expand Its Ecological Adaptation Region.	Front Plant Sci	10	288	2019		
46641	31139200	Zhong H., Kong W., Gong Z., Fang X., Deng X., Liu C., Li Y.	Evolutionary Analyses Reveal Diverged Patterns of <i>SQUAMOSA</i> promoter binding protein-like (<i>SPL</i>) Gene Family in <i>Oryza</i> Genus.	Front Plant Sci	10	565	2019		
46642	31143556	Zhu Y.J., Sun Z.C., Niu X.J., Ying J.Z., Fan Y.Y., Mou T.M., Tang S.Q., Zhuang J.Y.	Dissection of three quantitative trait loci for grain size on the long arm of chromosome 10 in rice (<i>Oryza sativa</i> L.).	PeerJ	7	e6966	2019		
46643	30658494	Tan Y., Sun J.Y., Zhang B., Chen M., Liu Y., Liu X.D.	Sensitivity of a Ratio Vegetation Index Derived from Hyperspectral Remote Sensing to the Brown Planthopper Stress on Rice Plants.	Sensors (Basel)	19(2)		2019		
46644	30600409	Liang R., Qin R., Yang C., Zeng D., Jin X., Shi C.	Identification and Characterization of a Novel Strigolactone-Insensitive Mutant, Dwarfism with High tillering ability 34 (dhta-34) in Rice (Oryza sativa L.).	Biochem. Genet.	57(3)	403-420	2019		
46645	30397804	Molina L., Jimenez R., Sreenivasulu N., Cuevas R.P.O.	Multi-Dimensional Cooking Quality Classification Using Routine Quality Evaluation Methods.	Methods Mol. Biol.	1892	137-150	2019		
46646	31024591	Li Z., Huang J., Wang Z., Meng F., Zhang S., Wu X., Zhang Z., Gao Z.	Overexpression of <i>Arabidopsis</i> Nucleotide-Binding and Leucine-Rich Repeat Genes <i>RPS2</i> and <i>RPM1</i>(<i>D505V</i>) Confers Broad-Spectrum disease resistance in Rice.	Front Plant Sci	10	417	2019		
46647	31141528	Yamamoto K.	Distillation of crop models to learn plant physiology theories using machine learning.	PLoS ONE	14(5)	e0217075	2019		
46648	30697220	Singh P., Singh I., Shah K.	Reduced Activity of nitrate reductase Under Heavy Metal Cadmium Stress in Rice: An <i>in silico</i> Answer.	Front Plant Sci	9	1948	2018		
46649	31178049	Soldan R., Mapelli F., Crotti E., Schnell S., Daffonchio D., Marasco R., Fusi M., Borin S., Cardinale M.	Bacterial endophytes of mangrove propagules elicit early establishment of the natural host and promote growth of cereal crops under salt stress.	Microbiol. Res.	223-225	33-43			
46650	30552799	Bello B.K., Hou Y., Zhao J., Jiao G., Wu Y., Li Z., Wang Y., Tong X., Wang W., Yuan W., Wei X., Zhang J.	NF-yb1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.).	Plant Biotechnol. J.	17(7)	1222-1235	2019		
46651	30656946	Jalali M., Hemati Matin N.	Nutritional status and risks of potentially toxic elements in some paddy soils and rice tissues.	Int J Phytoremediation	21(2)	111-119	2019		
46652	30537381	He Y., Yang B., He Y., Zhan C., Cheng Y., Zhang J., Zhang H., Cheng J., Wang Z.	A quantitative trait locus, qSE3, promotes seed germination and seedling establishment under salinity stress in rice.	Plant J.	97(6)	1089-1104	2019		
46653	30649573	You X., Zhang W., Hu J., Jing R., Cai Y., Feng Z., Kong F., Zhang J., Yan H., Chen W., Chen X., Ma J., Tang X., Wang P., Zhu S., Liu L., Jiang L., Wan J.	FLOURY ENDOSPERM15 encodes a glyoxalase I involved in compound granule formation and starch synthesis in rice endosperm.	Plant Cell Rep.	38(3)	345-359	2019		
46654	30654253	Wu Q., Leung J.Y.S., Du Y., Kong D., Shi Y., Wang Y., Xiao T.	Trace metals in e-waste lead to serious health risk through consumption of rice growing near an abandoned e-waste recycling site: Comparisons with PBDEs and AHFRs.	Environ. Pollut.	247	46-54	2019		
46655	30691093	Zhang Z.H., Zhu Y.J., Wang S.L., Fan Y.Y., Zhuang J.Y.	Importance of the Interaction between heading date Genes <i>Hd1</i> and <i>Ghd7</i> for Controlling Yield Traits in Rice.	Int J Mol Sci	20(3)		2019		
46656	30691406	Ji Z., Zeng Y., Liang Y., Qian Q., Yang C.	Proteomic dissection of the rice-Fusarium fujikuroi interaction and the correlation between the proteome and transcriptome under disease stress.	BMC Genomics	20(1)	91	2019		
46657	31297040	Yang M., Cheng L., Yan L., Shu W., Wang X., Qiu Y.	Mapping and characterization of a quantitative trait locus resistance to the brown planthopper in the rice variety IR64.	Hereditas	156	22	2019		
46658	30621186	Peng P., Gao Y., Li Z., Yu Y., Qin H., Guo Y., Huang R., Wang J.	Proteomic Analysis of a Rice Mutant <i>sd58</i> Possessing a Novel <i>d1</i> Allele of heterotrimeric G protein Alpha Subunit (RGA1) in Salt Stress with a Focus on ROS Scavenging.	Int J Mol Sci	20(1)		2019		
46659	31114596	Nozoye T., von Wir?n N., Sato Y., Higashiyama T., Nakanishi H., Nishizawa N.K.	Characterization of the Nicotianamine Exporter ENA1 in Rice.	Front Plant Sci	10	502	2019		
46660	31134107	Li R., Li M., Ashraf U., Liu S., Zhang J.	Exploring the Relationships Between Yield and Yield-Related Traits for Rice Varieties Released in China From 1978 to 2017.	Front Plant Sci	10	543	2019		
46661	31002711	Nothstein A.K., Eiche E., Riemann M., Nick P., Maier P., Tenspolde A., Neumann T.	Coupling Langmuir with Michaelis-Menten-A practical alternative to estimate Se content in rice?	PLoS ONE	14(4)	e0214219	2019		
46662	31191507	Mukherjee P., Mitra A., Roy M.	<i>Halomonas</i> Rhizobacteria of <i>Avicennia marina</i> of Indian Sundarbans Promote Rice Growth Under Saline and Heavy Metal Stresses Through Exopolysaccharide Production.	Front Microbiol	10	1207	2019		
46663	30397798	Butardo V.M., Sreenivasulu N., Juliano B.O.	Improving Rice Grain Quality: State-of-the-Art and Future Prospects.	Methods Mol. Biol.	1892	19-55	2019		
46664	30828343	Sandhu N., Yadaw R.B., Chaudhary B., Prasai H., Iftekharuddaula K., Venkateshwarlu C., Annamalai A., Xangsayasane P., Battan K.R., Ram M., Cruz M.T.S., Pablico P., Maturan P.C., Raman K.A., Catolos M., Kumar A.	Evaluating the Performance of Rice Genotypes for Improving Yield and Adaptability Under Direct Seeded Aerobic Cultivation Conditions.	Front Plant Sci	10	159	2019		
46665	30666263	Song G., Kwon C.T., Kim S.H., Shim Y., Lim C., Koh H.J., An G., Kang K., Paek N.C.	The Rice <i>SPOTTED LEAF4</i> (<i>SPL4</i>) Encodes a Plant Spastin That Inhibits ROS Accumulation in Leaf Development and Functions in leaf senescence.	Front Plant Sci	9	1925	2018		
46666	30687361	Das R., Arora V., Jaiswal S., Iquebal M.A., Angadi U.B., Fatma S., Singh R., Shil S., Rai A., Kumar D.	<i>PolyMorphPredict</i>: A Universal Web-Tool for Rapid Polymorphic Microsatellite Marker Discovery From Whole Genome and Transcriptome Data.	Front Plant Sci	9	1966	2018		
46667	30778363	Wang B., Zhang Y., Bi Z., Liu Q., Xu T., Yu N., Cao Y., Zhu A., Wu W., Zhan X., Anis G.B., Yu P., Chen D., Cheng S., Cao L.	Impaired Function of the calcium-dependent protein kinase, <i>OsCPK12</i>, Leads to Early Senescence in Rice (<i>Oryza sativa</i> L.).	Front Plant Sci	10	52	2019		
46668	30791555	No J., Mun S., Shin M.	Properties and Digestibility of Octenyl Succinic Anhydride-Modified Japonica-Type Waxy and Non-Waxy Rice Starches.	Molecules	24(4)		2019		
46669	30781587	Li H., Wang Z., Liang M., Cai L., Yang L.	Methionine Augments Antioxidant Activity of rice protein during Gastrointestinal Digestion.	Int J Mol Sci	20(4)		2019		
46670	30820693	Fang C., Li L., He R., Wang D., Wang M., Hu Q., Ma Q., Qin K., Feng X., Zhang G., Fu X., Liu Z.	Identification of S23 causing both interspecific hybrid male sterility and environment-conditioned male sterility in rice.	Rice (N Y)	12(1)	10	2019		
46671	30677211	Ren D., Xu Q., Qiu Z., Cui Y., Zhou T., Zeng D., Guo L., Qian Q.	FON4 prevents the multi-floret spikelet in rice.	Plant Biotechnol. J.	17(6)	1007-1009	2019		
46672	30770460	Hou J., Cao C., Ruan Y., Deng Y., Liu Y., Zhang K., Tan L., Zhu Z., Cai H., Liu F., Sun H., Gu P., Sun C., Fu Y.	<i>ESA1</i> Is Involved in Embryo Sac Abortion in Interspecific Hybrid Progeny of Rice.	Plant Physiol.	180(1)	356-366	2019		
46673	30811812	Liu C., Schl?ppi MR., Mao B., Wang W., Wang A., Chu C.	The bZIP73 transcription factor controls rice cold tolerance at the reproductive stage.	Plant Biotechnol. J.			2019		
46674	30623557	Sun Q., Li T.Y., Li D.D., Wang Z.Y., Li S., Li D.P., Han X., Liu J.M., Xuan Y.H.	Overexpression of Loose Plant Architecture 1 increases planting density and resistance to sheath blight disease via activation of PIN-FORMED 1a in rice.	Plant Biotechnol. J.	17(5)	855-857	2019		
46675	30728357	Toriba T., Tokunaga H., Shiga T., Nie F., Naramoto S., Honda E., Tanaka K., Taji T., Itoh J.I., Kyozuka J.	BLADE-ON-PETIOLE genes temporally and developmentally regulate the sheath to blade ratio of rice leaves.	Nat Commun	10(1)	619	2019		
46676	30790011	Cai M., Chen S., Wu M., Zheng T., Zhou L., Li C., Zhang H., Wang J., Xu X., Chai J., Ren Y., Guo X., Zhang X., Lei C., Cheng Z., Wang J., Jiang L., Zhai H., Wang H., Zhu S., Wan J.	Early heading 7 interacts with DTH8, and regulates flowering time in rice.	Plant Cell Rep.	38(5)	521-532	2019	HD5,RAP1B,EF1,RFT1,HD3A,RAP1A,GHD7	Hd5(t)*, Hd5, qHD5, HAP3H, OsHAP3H, NF-YB, CBF-A, DTH8 , qHD5(t)*, Ghd8, Ghd8/DTH8, Lhd1, NF-YB11, OsNF-YB11, NFYB11, LH8, DTH8/Ghd8, RH8, DTH8/Ghd8/LHD1, CAR8, DTH8/Ghd8/ OsHAP3H,MADS14, OsMADS14, FDRMADS6, RMADS211, AGL10,Ef1 (Ef2), Ef2, Ef1, Ehd1, Eh1(t)*, EF1, ef1, qEHD-10-1(t) (qEhd1), OsRR30, OsRR22 ,FT-L 3, OsFTL3, FT-L3, RFT, OsRFT1,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a ,OsMADS15, FDRMADS3, RMADS215, MADS15, DEP,Ghd2, Ghd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7
46677	30805719	Singh P., Ara H., Tayyeba S., Pandey C., Sinha A.K.	Development of efficient protocol for rice transformation overexpressing MAP kinase and their effect on root phenotypic traits.	Protoplasma	256(4)	997-1011	2019		
46678	30940331	Thomas D.T., Puthur J.T.	Amplification of abiotic stress tolerance potential in rice seedlings with a low dose of UV-B seed priming.	Funct. Plant Biol.			2019		
46679	30632163	Li Y., Cao X.L., Zhu Y., Yang X.M., Zhang K.N., Xiao Z.Y., Wang H., Zhao J.H., Zhang L.L., Li G.B., Zheng Y.P., Fan J., Wang J., Chen X.Q., Wu X.J., Zhao J.Q., Dong O.X., Chen X.W., Chern M., Wang W.M.	Osa-miR398b boosts H2 O2 production and rice blast disease-resistance via multiple superoxide dismutases.	New Phytol.	222(3)	1507-1522	2019		
46680	30734111	Kumar G., Jyothsna M., Valarmathi P., Roy S., Banerjee A., Tarafdar J., Senapati B.K., Robin S., Manonmani S., Rabindran R., Dasgupta I.	Assessment of resistance to rice tungro disease in popular rice varieties in India by introgression of a transgene against Rice tungro bacilliform virus.	Arch. Virol.	164(4)	1005-1013	2019		
46681	30738218	Awasthi J.P., Chandra T., Mishra S., Parmar S., Shaw B.P., Nilawe P.D., Chauhan N.K., Sahoo S., Panda S.K.	Identification and characterization of drought responsive miRNAs in a drought tolerant upland rice cultivar KMJ 1-12-3.	Plant Physiol. Biochem.	137	62-74	2019		
46682	30776559	Xie T., Li Y., Dong H., Liu Y., Wang M., Wang G.	Effects and mechanisms on the reduction of lead accumulation in rice grains through lime amendment.	Ecotoxicol. Environ. Saf.	173	266-272	2019		
46683	30781568	Fu X., Xu J., Zhou M., Chen M., Shen L., Li T., Zhu Y., Wang J., Hu J., Zhu L., Gao Z., Dong G., Guo L., Ren D., Chen G., Lin J., Qian Q., Zhang G.	Enhanced Expression of QTL <i>qLL9/DEP1</i> Facilitates the Improvement of Leaf Morphology and Grain Yield in Rice.	Int J Mol Sci	20(4)		2019		
46684	30791412	Jewel Z.A., Ali J., Mahender A., Hernandez J., Pang Y., Li Z.	Identification of Quantitative Trait Loci Associated with Nutrient Use Efficiency Traits, Using SNP Markers in an Early Backcross Population of Rice (<i>Oryza sativa</i> L.).	Int J Mol Sci	20(4)		2019		
46685	30725309	Wang J., Zhang Q., Wang Y., Huang J., Luo N., Wei S., Jin J.	Analysing the rice young panicle transcriptome reveals the gene regulatory network controlled by TRIANGULAR HULL1.	Rice (N Y)	12(1)	6	2019	SAUR23,TIFY11B,_,TIFY11C,PME25,EIL2,_,_,BLS1,TIFY10C,SAUR20,_,TPP6,BMY6,TRE1,_,TPP3,TIFY10B,TIFY11D	OsSAUR23,OsJAZ4, JAZ4, OsJAZ 10, OsJAZ10, JAZ10, OsTIFY11b,,OsJAZ2, JAZ2, OsJAZ 11, OsJAZ11, Os-JAZ11, JAZ11, OsTIFY11c. OsJAZ1, JAZ1,OsPME25,OsEIL2,OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35,,OsBLS1, OsG1L6, G1L6, TH1, OsTH1, TH1/BSG1/BLS1/AFD1, BSG1, OsBSG1, AFD1, OsAFD1, BH1, OsBH1,OsJAZ7, JAZ7, OsJAZ 8, OsJAZ8, Os-JAZ8, JAZ8, OsTIFY10c, OsTIFY10c/OsJAZ8,OsSAUR20,,OsTPP6,,OsTRE, OsTRE1,OsENOD93, ENOD93,OsTPP3,OsJAZ6, OsJAZ 7, OsJAZ7, OsTIFY10B, JAZ6, JAZ7,OsTIFY11d, OsJAZ1, JAZ1, OsJAZ 12, OsJAZ12, JAZ12
46686	30823472	Robles P., Quesada V.	Transcriptional and Post-transcriptional Regulation of Organellar Gene Expression (OGE) and Its Roles in Plant salt tolerance.	Int J Mol Sci	20(5)		2019		
46687	30715580	P?rez L., Soto E., Farr? G., Juanos J., Villorbina G., Bassie L., Medina V., Serrato A.J., Sahrawy M., Rojas J.A., Romagosa I., Mu?oz P., Zhu C., Christou P.	CRISPR/Cas9 mutations in the rice Waxy/GBSSI gene induce allele-specific and zygosity-dependent feedback effects on endosperm starch biosynthesis.	Plant Cell Rep.	38(3)	417-433	2019		
46688	31086485	Kitazawa N., Shomura A., Mizubayashi T., Ando T., Nagata K., Hayashi N., Takahashi A., Yamanouchi U., Fukuoka S.	Rapid DNA-genotyping system targeting ten loci for resistance to blast disease in rice.	Breed. Sci.	69(1)	68-83	2019		
46689	30790051	Wang Y., Wang Y., Deng D.	Multifaceted plant G protein: interaction network, agronomic potential, and beyond.	Planta	249(5)	1259-1266	2019		
46690	30820172	Kawakami D., Yoshida T., Kanemaru Y., Huarhua Zaquinaula MH., Mizukami T., Arimoto M., Shibata T., Goto A., Enami Y., Amano H., Teraoka T., Komatsu K., Arie T.	Induction of resistance to diseases in plant by aerial ultrasound irradiation.	Journal of Pesticide Science	44(1)	41-47	2019		
46691	30733435	Chen J., Lu L., Benjamin J., Diaz S., Hancock C.N., Stajich J.E., Wessler S.R.	Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice.	Nat Commun	10(1)	641	2019		
46692	31086490	Fujino K., Yamanouchi U., Nonoue Y., Obara M., Yano M.	Switching genetic effects of the flowering time gene <i>Hd1</i> in LD conditions by <i>Ghd7</i> and <i>OsPRR37</i> in rice.	Breed. Sci.	69(1)	127-132	2019		
46693	30796339	Yadav S., Sandhu N., Majumder R.R., Dixit S., Kumar S., Singh S.P., Mandal N.P., Das S.P., Yadaw R.B., Singh V.K., Sinha P., Varshney R.K., Kumar A.	Epistatic interactions of major effect drought QTLs with genetic background loci determine grain yield of rice under drought stress.	Sci Rep	9(1)	2616	2019		
46694	30825766	Khaliq M.A., Khan Tarin MW., Jingxia G., Yanhui C., Guo W.	Soil liming effects on CH4, N2O emission and Cd, Pb accumulation in upland and paddy rice.	Environ. Pollut.	248	408-420	2019		
46695	30773771	Liu F., McDonald M., Schwessinger B., Joe A., Pruitt R., Erickson T., Zhao X., Stewart V., Ronald P.C.	Variation and inheritance of the Xanthomonas RaxX-raxSTAB gene cluster required for activation of XA21-mediated immunity.	Mol. Plant Pathol.	20(5)	656-672	2019		
46696	30759266	Ganie S.A., Molla K.A., Henry R.J., Bhat K.V., Mondal T.K.	Advances in understanding salt tolerance in rice.	Theor. Appl. Genet.	132(4)	851-870	2019		
46697	30623552	Zhang H., Tan X., He Y., Xie K., Li L., Wang R., Hong G., Li J., Li J., Taliansky M., MacFarlane S., Yan F., Chen J., Sun Z.	Rice black-streaked dwarf virus P10 acts as either a synergistic or antagonistic determinant during superinfection with related or unrelated virus.	Mol. Plant Pathol.	20(5)	641-655	2019		
46698	30791475	Ding X., Huang X., Sun L., Wu J., Liu J.	Influence of Abscisic Acid-Biosynthesis Inhibitor Fluridone on the Feeding Behavior and Fecundity of <i>Nilaparvata lugens</i>.	Insects	10(2)		2019		
46699	30753891	Zhang Q., Xu B., Pan J., Liu D., Lv R., Yan D.	Expression and active testing of VP7 from GCRV (Grass carp reovirus) fused with cholera toxin B subunit in rice calli.	Protein Expr. Purif.	158	1-8	2019		
46700	30800612	Teh C.Y., Ho C.L., Shaharuddin N.A., Lai K.S., Mahmood M.	Proteome of rice roots treated with exogenous proline.	3 Biotech	9(3)	101	2019		
46701	30597738	Xu R., Li N., Li Y.	Control of grain size by G protein signaling in rice.	J Integr Plant Biol	61(5)	533-540	2019		
46702	30584677	Ichida H., Morita R., Shirakawa Y., Hayashi Y., Abe T.	Targeted exome sequencing of unselected heavy-ion beam-irradiated populations reveals less-biased mutation characteristics in the rice genome.	Plant J.	98(2)	301-314	2019		
46703	30808281	Qin W., Liu C., Jiang W., Xue Y., Wang G., Liu S.	A coumarin analogue NFA from endophytic Aspergillus fumigatus improves drought resistance in rice as an antioxidant.	BMC Microbiol.	19(1)	50	2019		
46704	30733556	Chettry U., Chrungoo N.K., Kulkarni K.	Comparative transcriptomics approach in elucidation of carotenoid biosynthesis regulation in grains of rice (Oryza sativa L.).	Sci Rep	9(1)	1631	2019		
46705	30778050	Wang J.Y., Haider I., Jamil M., Fiorilli V., Saito Y., Mi J., Baz L., Kountche B.A., Jia K.P., Guo X., Balakrishna A., Ntui V.O., Reinke B., Volpe V., Gojobori T., Blilou I., Lanfranco L., Bonfante P., Al-Babili S.	The apocarotenoid metabolite zaxinone regulates growth and strigolactone biosynthesis in rice.	Nat Commun	10(1)	810	2019		
46706	31086482	Qing D., Dai G., Zhou W., Huang S., Liang H., Gao L., Gao J., Huang J., Zhou M., Chen R., Chen W., Huang F., Deng G.	Development of molecular marker and introgression of <i>Bph3</i> into elite rice cultivars by marker-assisted selection.	Breed. Sci.	69(1)	40-46	2019		
46707	30778782	Sandhu N., Dixit S., Swamy B.P.M., Raman A., Kumar S., Singh S.P., Yadaw R.B., Singh O.N., Reddy J.N., Anandan A., Yadav S., Venkataeshwarllu C., Henry A., Verulkar S., Mandal N.P., Ram T., Badri J., Vikram P., Kumar A.	Marker Assisted Breeding to Develop Multiple Stress Tolerant Varieties for Flood and Drought Prone Areas.	Rice (N Y)	12(1)	8	2019		
46708	30823623	Paleari L., Movedi E., Vesely F.M., Thoelke W., Tartarini S., Foi M., Boschetti M., Nutini F., Confalonieri R.	Estimating Crop Nutritional Status Using Smart Apps to Support Nitrogen Fertilization. A Case Study on Paddy Rice.	Sensors (Basel)	19(4)		2019		
46709	30743158	Gupta M.K., Vadde R., Gouda G., Donde R., Kumar J., Behera L.	Computational approach to understand molecular mechanism involved in BPH resistance in Bt- rice plant.	J. Mol. Graph. Model.	88	209-220	2019		
46710	30718781	Yoolong S., Kruasuwan W., Thanh Ph?m HT., Jaemsaeng R., Jantasuriyarat C., Thamchaipenet A.	Modulation of salt tolerance in Thai jasmine rice (Oryza sativa L. cv. KDML105) by Streptomyces venezuelae ATCC 10712 expressing ACC deaminase.	Sci Rep	9(1)	1275	2019		
46711	30856405	Kumar D., Sarmah B.K., Das P.K.	Ethylene mediates repression of anthocyanin accumulation in black rice pericarps in the absence of light.	J. Plant Physiol.	236	34-38	2019		
46712	30501128	Suratanee A., Chokrathok C., Chutimanukul P., Khrueasan N., Buaboocha T., Chadchawan S., Plaimas K.	Two-State Co-Expression Network Analysis to Identify Genes Related to Salt Tolerance in Thai rice.	Genes (Basel)	9(12)		2018		
46713	30404149	Ciulu M., C?diz-Gurrea ML., Segura-Carretero A.	Extraction and Analysis of Phenolic Compounds in Rice: A Review.	Molecules	23(11)		2018		
46714	30390532	Fu H., Yu H., Li T., Wu Y.	Effect of cadmium stress on inorganic and organic components in xylem sap of high cadmium accumulating rice line (Oryza sativa L.).	Ecotoxicol. Environ. Saf.	168	330-337	2019		
46715	30456488	Hamdani S., Khan N., Perveen S., Qu M., Jiang J., Govindjee, Zhu X.G.	Changes in the photosynthesis properties and photoprotection capacity in rice (Oryza sativa) grown under red, blue, or white light.	Photosyn. Res.	139(1-3)	107-121	2019		
46716	30503392	Ha S.H., Kim J.K., Jeong Y.S., You M.K., Lim S.H., Kim J.K.	Stepwise pathway engineering to the biosynthesis of zeaxanthin, astaxanthin and capsanthin in rice endosperm.	Metab. Eng.	52	178-189	2019		
46717	30448978	Quero G., Bonnecarr?re V., Fern?ndez S., Silva P., Simondi S., Borsani O.	Light-use efficiency and energy partitioning in rice is cultivar dependent.	Photosyn. Res.	140(1)	51-63	2019		
46718	30443261	Kilasi N.L., Singh J., Vallejos C.E., Ye C., Jagadish S.V.K., Kusolwa P., Rathinasabapathi B.	Heat Stress Tolerance in Rice (<i>Oryza sativa</i> L.): Identification of Quantitative Trait Loci and Candidate Genes for Seedling Growth Under Heat Stress.	Front Plant Sci	9	1578	2018		
46719	30413183	He P., Wang X., Zhang X., Jiang Y., Tian W., Zhang X., Li Y., Sun Y., Xie J., Ni J., He G., Sang X.	Short and narrow flag leaf1, a GATA zinc finger domain-containing protein, regulates flag leaf size in rice (Oryza sativa).	BMC Plant Biol.	18(1)	273	2018		
46720	30388832	Li Z., Wang Y., Bello B.K., Ajadi A.A., Tong X., Chang Y., Zhang J.	Construction of a Quantitative Acetylomic Tissue Atlas in Rice (<i>Oryza sativa</i> L.).	Molecules	23(11)		2018		
46721	30419020	Zhang C., Shen Y., Tang D., Shi W., Zhang D., Du G., Zhou Y., Liang G., Li Y., Cheng Z.	The zinc finger protein DCM1 is required for male meiotic cytokinesis by preserving callose in rice.	PLoS Genet.	14(11)	e1007769	2018	_,GSL10,DCM1,PABN1,GSL3,GSL2,MYB80,PABN2,_,GSL9,ABCG15	OsA6,OsGSL10,OsDCM1,OsPABN1,OsGSL3,OsGSL2,OsMYB80,OsPABN2,Osg1, g1,OsGSL9,OsABCG15, PDA, PDA1, OsABCG15/PDA1
46722	30481282	Wu X., Zhang Q., Wu Z., Tai F., Wang W.	Subcellular locations of potential cell wall proteins in plants: predictors, databases and cross-referencing.	Brief. Bioinformatics	19(6)	1130-1140	2018		
46723	30444911	Shen Q., Liu L., Wang L., Wang Q.	Indole primes plant defense against necrotrophic fungal pathogen infection.	PLoS ONE	13(11)	e0207607	2018		
46724	30476516	Divya K., Vijayan S., Nair S.J., Jisha M.S.	Optimization of chitosan nanoparticle synthesis and its potential application as germination elicitor of Oryza sativa L.	Int. J. Biol. Macromol.	124	1053-1059	2019		
46725	30628243	Guo Y.X., Zhao X.L.	[Effect of Particulate Organic Matter on Cadmium Uptake and Transport in Rice].	Huan Jing Ke Xue	39(11)	5180-5188	2018		
46726	30390130	Inukai T., Nagashima S., Kato M.	Pid3-I1 is a race-specific partial-resistance allele at the Pid3 blast resistance locus in rice.	Theor. Appl. Genet.	132(2)	395-404	2019		
46727	30448535	Zhang Q., Liang Z., Cui X., Ji C., Li Y., Zhang P., Liu J., Riaz A., Yao P., Liu M., Wang Y., Lu T., Yu H., Yang D., Zheng H., Gu X.	N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses.	Mol Plant	11(12)	1492-1508	2018		
46728	30597783	Chiao W.T., Syu C.H., Chen B.C., Juang K.W.	Cadmium in rice grains from a field trial in relation to model parameters of Cd-toxicity and -absorption in rice seedlings.	Ecotoxicol. Environ. Saf.	169	837-847	2019		
46729	30824026	Ichida H., Abe T.	An improved and robust method to efficiently deplete repetitive elements from complex plant genomes.	Plant Sci.	280	455-460	2019		
46730	30541451	Yu X., Kimball J.A., Milla-Lewis SR.	High density genetic maps of St. Augustinegrass and applications to comparative genomic analysis and QTL mapping for turf quality traits.	BMC Plant Biol.	18(1)	346	2018		
46731	30555075	Pavani M., Sundaram R.M., Ramesha M.S., Kishore K., Kemparaju K.B.	Prediction of heterosis in rice based on divergence of morphological and molecular markers.	J. Genet.	97(5)	1263-1279	2018		
46732	30531940	Cho J., Benoit M., Catoni M., Drost H.G., Brestovitsky A., Oosterbeek M., Paszkowski J.	Sensitive detection of pre-integration intermediates of long terminal repeat retrotransposons in crop plants.	Nat Plants	5(1)	26-33	2019		
46733	30375057	Lv Z., Zhang W., Wu Y., Huang S., Zhou Y., Zhang A., Deng X., Xu C., Xu Z., Gong L., Liu B.	Extensive allele-level remodeling of histone methylation modification in reciprocal F1 hybrids of rice subspecies.	Plant J.	97(3)	571-586	2019		
46734	30563847	Dangol S., Chen Y., Hwang B.K., Jwa N.S.	Iron- and Reactive Oxygen Species-Dependent Ferroptotic Cell Death in Rice-<i>Magnaporthe oryzae</i> Interactions.	Plant Cell	31(1)	189-209	2019		
46735	30606471	Chen Z., Zhao W., Zhu X., Zou C., Yin J., Chern M., Zhou X., Ying H., Jiang X., Li Y., Liao H., Cheng M., Li W., He M., Wang J., Wang J., Ma B., Wang J., Li S., Zhu L., Chen X.	Identification and characterization of rice blast resistance gene Pid4 by a combination of transcriptomic profiling and genome analysis.	J Genet Genomics	45(12)	663-672	2018		
46736	30824011	Wang Y., Zhong P., Zhang X., Liu J., Zhang C., Yang X., Wan C., Liu C., Zhou H., Yang B., Sun C., Deng X., Wang P.	GRA78 encoding a putative S-sulfocysteine synthase is involved in chloroplast development at the early seedling stage of rice.	Plant Sci.	280	321-329	2019		
46737	30533310	Zhao M., Wang W., Wei L., Chen P., Yuan F., Wang Z., Ying X.	Molecular evolution and expression divergence of three key Met biosynthetic genes in plants: <i>CGS</i>, <i>HMT</i> and <i>MMT</i>.	PeerJ	6	e6023	2018	CGS1,CGS4,HMT2,CGS2,CGS5,HMT3,HMT4,CGS3,HMT1,MMT	OsaCGS1, OsCGS1,OsaCGS4, OsCGS4,OsaHMT2, OsHMT2,OsaCGS2, OsCGS2,OsaCGS5, OsCGS5,OsaHMT3, OsHMT3,OsaHMT4, OsHMT4,OsaCGS3, OsCGS3,OsaHMT1, OsHMT1,OsaMMT, OsMMT
46738	30631333	Long J., Song C., Yan F., Zhou J., Zhou H., Yang B.	Non-TAL Effectors From <i>Xanthomonas oryzae</i> pv. <i>oryzae</i> Suppress Peptidoglycan-Triggered MAPK Activation in Rice.	Front Plant Sci	9	1857	2018		
46739	30581315	Samara Shekar Reddy S., Singh B., Peter A.J., Venkateswar Rao T.	Production of transgenic local rice cultivars (<i>Oryza sativa</i> L.) for improved drought tolerance using <i>Agrobacterium</i> mediated transformation.	Saudi J Biol Sci	25(8)	1535-1545	2018		
46740	30288819	Zhang G., Sun M., Wang J., Lei M., Li C., Zhao D., Huang J., Li W., Li S., Li J., Yang J., Luo Y., Hu S., Zhang B.	PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.	Plant J.	97(2)	296-305	2019		
46741	30619409	Zhao M., Song J., Wu A., Hu T., Li J.	Mining Beneficial Genes for Aluminum Tolerance Within a Core Collection of Rice Landraces Through Genome-Wide Association Mapping With High Density SNPs From Specific-Locus Amplified Fragment Sequencing.	Front Plant Sci	9	1838	2018		
46742	30559099	Yang W., Zheng X.H., Cheng C.P., Ye N., Huang F.H., Ye X.F.	[Mapping and cloning of GAD1-2 for long awn using CSSLs in rice (Oryza sativa L.)].	Yi Chuan	40(12)	1101-1111	2018		
46743	30365034		Database Resources of the BIG Data Center in 2019.	Nucleic Acids Res.	47(D1)	D8-D14	2019		
46744	30690658	Chen L., Zheng X., Guo X., Cui Y., Yang H.	The roles of Aux/IAA gene family in development of Dendrocalamus sinicus (Poaceae: Bambusoideae) inferred by comprehensive analysis and expression profiling.	Mol. Biol. Rep.	46(2)	1625-1634	2019		
46745	30733188	Wang J., Wang C., Wang K.	Generation of marker-free transgenic rice using CRISPR/Cas9 system controlled by floral specific promoters.	J Genet Genomics	46(1)	61-64	2019		
46746	30639120	Shen B.R., Wang L.M., Lin X.L., Yao Z., Xu H.W., Zhu C.H., Teng H.Y., Cui L.L., Liu E.E., Zhang J.J., He Z.H., Peng X.X.	Engineering a New Chloroplastic Photorespiratory Bypass to Increase Photosynthetic Efficiency and Productivity in Rice.	Mol Plant	12(2)	199-214	2019		
46747	31134125	Wu Y., Xu W., Wang F., Zhao S., Feng F., Song J., Zhang C., Yang J.	Increasing Cytosine Base Editing Scope and Efficiency With Engineered Cas9-PmCDA1 Fusions and the Modified sgRNA in Rice.	Front Genet	10	379	2019		
46748	31169887	Chandran A.K.N., Moon S., Yoo Y.H., Gho Y.S., Cao P., Sharma R., Sharma M.K., Ronald P.C., Jung K.H.	A web-based tool for the prediction of rice transcription factor function.	Database (Oxford)	2019		2019		
46749	30449034	Qiu Z., Zhu L., He L., Chen D., Zeng D., Chen G., Hu J., Zhang G., Ren D., Dong G., Gao Z., Shen L., Zhang Q., Guo L., Qian Q.	DNA damage and reactive oxygen species cause cell death in the rice local lesions 1 mutant under high light and high temperature.	New Phytol.	222(1)	349-365	2019		
46750	30800142	Li P., Yang H., Wang L., Liu H., Huo H., Zhang C., Liu A., Zhu A., Hu J., Lin Y., Liu L.	Physiological and Transcriptome Analyses Reveal Short-Term Responses and Formation of Memory Under Drought Stress in Rice.	Front Genet	10	55	2019		
46751	30693151	Khadka R.B., Uphoff N.	Effects of <i>Trichoderma</i> seedling treatment with System of Rice Intensification management and with conventional management of transplanted rice.	PeerJ	7	e5877	2019		
46752	30586149	Wang J., Hasegawa T., Li L., Lam S.K., Zhang X., Liu X., Pan G.	Changes in grain protein and amino acids composition of wheat and rice under short-term increased [CO2 ] and temperature of canopy air in a paddy from East China.	New Phytol.	222(2)	726-734	2019		
46753	30397800	Pasion E., Aguila R., Sreenivasulu N., Anacleto R.	Novel Imaging Techniques to Analyze Panicle Architecture.	Methods Mol. Biol.	1892	75-88	2019		
46754	31058278	Wang K., Wang C., Guo B., Song K., Shi C., Jiang X., Wang K., Tan Y., Wang L., Wang L., Li J., Li Y., Cai Y., Zhao H., Sun X.	CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress.	Database (Oxford)	2019		2019		
46755	30721864	Wang M., Tang Z., Chen X.P., Wang X., Zhou W.X., Tang Z., Zhang J., Zhao F.J.	Water management impacts the soil microbial communities and total arsenic and methylated arsenicals in rice grains.	Environ. Pollut.	247	736-744	2019		
46756	30610631	Gu W., Zhang D., Qi Y., Yuan Z.	Generating Photoperiod-Sensitive Genic Male Sterile Rice Lines with CRISPR/Cas9.	Methods Mol. Biol.	1917	97-107	2019		
46757	30804963	Hwang S.K., Singh S., Maharana J., Kalita S., Tuncel A., Rath T., Panda D., Modi M.K., Okita T.W.	Mechanism Underlying Heat Stability of the Rice Endosperm Cytosolic ADP-glucose pyrophosphorylase.	Front Plant Sci	10	70	2019		
46758	30415327	Rathore D.S., Zuniga-Soto E., Mullins E.	Ensifer-Mediated Transformation (EMT) of Rice (Monocot) and Oilseed Rape (Dicot).	Methods Mol. Biol.	1864	37-48	2019		
46759	30398650	Assis R.	Lineage-Specific Expression Divergence in Grasses Is Associated with Male Reproduction, Host-Pathogen Defense, and Domestication.	Genome Biol Evol	11(1)	207-219	2019		
46760	30804959	Liu X., Chen S., Chen M., Zheng G., Peng Y., Shi X., Qin P., Xu X., Teng S.	Association Study Reveals Genetic Loci Responsible for Arsenic, Cadmium and Lead Accumulation in Rice Grain in Contaminated Farmlands.	Front Plant Sci	10	61	2019		
46761	30610632	Zhou J., Zhong Z., Chen H., Li Q., Zheng X., Qi Y., Zhang Y.	Knocking Out MicroRNA Genes in Rice with CRISPR-Cas9.	Methods Mol. Biol.	1917	109-119	2019		
46762	30679610	Liu Y., Li C., Fang B., Fang Y., Chen K., Zhang Y., Zhang H.	Potential for high yield with increased seedling density and decreased N fertilizer application under seedling-throwing rice cultivation.	Sci Rep	9(1)	731	2019		
46763	30415331	Wu C., Sui Y.	Efficient and Fast Production of Transgenic Rice Plants by Agrobacterium-Mediated Transformation.	Methods Mol. Biol.	1864	95-103	2019		
46764	30639871	Gu J.F., Zhou H., Tang H.L., Yang W.T., Zeng M., Liu Z.M., Peng P.Q., Liao B.H.	Cadmium and arsenic accumulation during the rice growth period under in situ remediation.	Ecotoxicol. Environ. Saf.	171	451-459	2019		
46765	31156595	Bertolazi A.A., de Souza SB., Ruas K.F., Campostrini E., de Rezende CE., Cruz C., Melo J., Colodete C.M., Varma A., Ramos A.C.	Inoculation With <i>Piriformospora indica</i> Is More Efficient in Wild-Type Rice Than in Transgenic Rice Over-Expressing the vacuolar H+-PPase.	Front Microbiol	10	1087	2019		
46766	30951558	Bei X., Shahid M.Q., Wu J., Chen Z., Wang L., Liu X.	Re-sequencing and transcriptome analysis reveal rich DNA variations and differential expressions of fertility-related genes in neo-tetraploid rice.	PLoS ONE	14(4)	e0214953	2019		
46767	30611782	Xiong Q., Cao C., Shen T., Zhong L., He H., Chen X.	Comprehensive metabolomic and proteomic analysis in biochemical metabolic pathways of rice spikes under drought and submergence stress.	Biochim Biophys Acta Proteins Proteom	1867(3)	237-247	2019		
46768	30610627	Li R., Char S.N., Yang B.	Creating Large Chromosomal Deletions in Rice Using CRISPR/Cas9.	Methods Mol. Biol.	1917	47-61	2019		
46769	30931320	Bazrkar-Khatibani L., Fakheri B.A., Hosseini-Chaleshtori M., Mahender A., Mahdinejad N., Ali J.	Genetic Mapping and Validation of Quantitative Trait Loci (QTL) for the Grain Appearance and Quality Traits in Rice (<i>Oryza sativa</i> L.) by Using Recombinant Inbred Line (RIL) Population.	International Journal of Genomics	2019	3160275	2019		
46770	30679785	Maeda S., Dubouzet J.G., Kondou Y., Jikumaru Y., Seo S., Oda K., Matsui M., Hirochika H., Mori M.	The rice CYP78A gene BSR2 confers resistance to Rhizoctonia solani and affects seed size and growth in Arabidopsis and rice.	Sci Rep	9(1)	587	2019		
46771	30678057	Ma S., Lin S., Wang M., Zou Y., Tao H., Liu W., Zhang L., Liang K., Ai Y., He H.	Differential Expression Proteins Contribute to Race-Specific Resistant Ability in Rice (<i>Oryza sativa</i> L.).	Plants (Basel)	8(2)		2019		
46772	30415343	Char S.N., Li R., Yang B.	CRISPR/Cas9 for Mutagenesis in Rice.	Methods Mol. Biol.	1864	279-293	2019		
46773	30643178	Huang M., Fan L., Zou Y.	Contrasting responses of grain yield to reducing nitrogen application rate in double- and single-season rice.	Sci Rep	9(1)	92	2019		
46774	31057567	Sun X., Liu Q., Tang T., Chen X., Luo X.	Silicon Fertilizer Application Promotes Phytolith Accumulation in Rice Plants.	Front Plant Sci	10	425	2019		
46775	31026257	Prajapati G.K., Pandey B., Mishra A.K., Baek K.H., Pandey D.M.	Identification of GCC-box and TCC-box motifs in the promoters of differentially expressed genes in rice (Oryza sativa L.): Experimental and computational approaches.	PLoS ONE	14(4)	e0214964	2019		
46776	30523657	Cakir B., Tian L., Crofts N., Chou H.L., Koper K., Ng C.Y., Tuncel A., Gargouri M., Hwang S.K., Fujita N., Okita T.W.	Re-programming of gene expression in the CS8 rice line over-expressing ADPglucose pyrophosphorylase induces a suppressor of starch biosynthesis.	Plant J.	97(6)	1073-1088	2019		
46777	30700006	Quan N.V., Tran H.D., Xuan T.D., Ahmad A., Dat T.D., Khanh T.D., Teschke R.	Momilactones A and B Are alpha-amylase and alpha-Glucosidase Inhibitors.	Molecules	24(3)		2019		
46778	30956429	Pongprayoon W., Tisarum R., Theerawittaya C., Cha-Um S.	Evaluation and clustering on salt-tolerant ability in rice genotypes (<i>Oryza sativa</i> L. subsp. <i>indica</i>) using multivariate physiological indices.	Physiol Mol Biol Plants	25(2)	473-483	2019		
46779	30739972	Horgan F.G., Almazan M.P., Vu Q., Ramal A.F., Bernal C.C., Yasui H., Fujita D.	Unanticipated benefits and potential ecological costs associated with pyramiding leafhopper resistance loci in rice.	Crop Prot.	115	47-58	2019		
46780	30380099	Wu D., Guo Z., Ye J., Feng H., Liu J., Chen G., Zheng J., Yan D., Yang X., Xiong X., Liu Q., Niu Z., Gay A.P., Doonan J.H., Xiong L., Yang W.	Combining high-throughput micro-CT-RGB phenotyping and genome-wide association study to dissect the genetic architecture of tiller growth in rice.	J. Exp. Bot.	70(2)	545-561	2019		
46781	30397810	Molina L., Lapis J.R., Sreenivasulu N., Cuevas R.P.O.	Determination of Macronutrient and Micronutrient Content in Rice Grains Using Inductively Coupled Plasma-Optical Emission Spectrometry (ICP-OES).	Methods Mol. Biol.	1892	253-264	2019		
46782	31231409	Bund? M., Shi X., Vernet M., Marcos J.F., L?pez-Garc?a B., Coca M.	Rice Seeds as Biofactories of Rationally Designed and Cell-Penetrating Antifungal PAF Peptides.	Front Plant Sci	10	731	2019		
46783	30397801	Lapis J.R., Cuevas R.P.O., Sreenivasulu N., Molina L.	Measuring head rice Recovery in Rice.	Methods Mol. Biol.	1892	89-98	2019		
46784	30624619	Chen W., Lv H., Nie F., Lin H.	i6mA-Pred: Identifying DNA N6-methyladenine sites in the rice genome.	Bioinformatics			2019		
46785	30397814	Bandyopadhyay A., Yin X., Biswal A., Coe R., Quick W.P.	CRISPR-Cas9-Mediated Genome Editing of Rice Towards Better Grain Quality.	Methods Mol. Biol.	1892	311-336	2019		
46786	30535157	Chen M.X., Zhu F.Y., Wang F.Z., Ye N.H., Gao B., Chen X., Zhao S.S., Fan T., Cao Y.Y., Liu T.Y., Su Z.Z., Xie L.J., Hu Q.J., Wu H.J., Xiao S., Zhang J., Liu Y.G.	Alternative splicing and translation play important roles in hypoxic germination in rice.	J. Exp. Bot.	70(3)	817-833	2019		
46787	30840921	Chen B., Yin G., Whelan J., Zhang Z., Xin X., He J., Chen X., Zhang J., Zhou Y., Lu X.	Composition of Mitochondrial Complex I during the Critical Node of Seed Aging in Oryza sativa.	J. Plant Physiol.	236	7-14	2019		
46788	30827753	Zhang X., Qin P., Peng Y., Ma B., Hu J., Fan S., Hu B., Zhang G., Yuan H., Yan W., Chen W., Tu B., He H., Ma B., Wang Y., Li S.	A single nucleotide substitution at 5'-UTR of GSN1 represses its translation and leads to an increase of grain length in rice.	J Genet Genomics	46(2)	105-108	2019		
46789	30733489	Tonnessen B.W., Bossa-Castro AM., Mauleon R., Alexandrov N., Leach J.E.	Shared cis-regulatory architecture identified across defense response genes is associated with broad-spectrum quantitative resistance in rice.	Sci Rep	9(1)	1536	2019		
46790	30796712	Rao T.B., Chopperla R., Methre R., Punniakotti E., Venkatesh V., Sailaja B., Reddy M.R., Yugander A., Laha G.S., Madhav M.S., Sundaram R.M., Ladhalakshmi D., Balachandran S.M., Mangrauthia S.K.	Pectin induced transcriptome of a Rhizoctonia solani strain causing sheath blight disease in rice reveals insights on key genes and RNAi machinery for development of pathogen derived resistance.	Plant Mol. Biol.	100(1-2)	59-71	2019		
46791	30769935	Sun M., Yu L., Tong Z., Dong X., Chu Y., Wang M., Gao T., Duan J.	Dissipation Dynamics and Dietary Risk Assessment of Kresoxim-Methyl Residue in Rice.	Molecules	24(4)		2019		
46792	30781829	Liu F., Xu Y., Zhou L., Ali A., Jiang H., Zhu S., Li X.	DNA repair gene <i>ZmRAD51A</i> Improves Rice and <i>Arabidopsis</i> Resistance to Disease.	Int J Mol Sci	20(4)		2019		
46793	30717326	Minh T.N., Xuan T.D., Van T.M., Andriana Y., Viet T.D., Khanh T.D., Tran H.D.	Phytochemical Analysis and Potential Biological Activities of Essential Oil from Rice Leaf.	Molecules	24(3)		2019		
46794	30730076	Li S., Zhao J., Zhai Y., Yuan Q., Zhang H., Wu X., Lu Y., Peng J., Sun Z., Lin L., Zheng H., Chen J., Yan F.	The hypersensitive induced reaction 3 (HIR3) gene contributes to plant basal resistance via an EDS1 and salicylic acid-dependent pathway.	Plant J.	98(5)	783-797	2019	HIR3,PR1B,_,PR10A	OsHIR3,OsPR1b, PR1b, OsPR1#011, OsPR1-11, PR-1b, OsPR-1b, PR1, PR-1,PR5 ,PBZ1, OsPR10a, RPR10a, PR-10a, PR10a, PR10, OsPR10A, OsPR-10a, OsPR10, PR10/PBZ1, OsPBZ1, OsPR10a/PBZ1 
46795	30754644	Peng Y., Zou T., Li L., Tang S., Li Q., Zhang J., Chen Y., Wang X., Yang G., Hu Y.	Map-Based Cloning and Functional Analysis of <i>YE1</i> in Rice, Which Is Involved in Light-Dependent Chlorophyll Biogenesis and Photoperiodic Flowering Pathway.	Int J Mol Sci	20(3)		2019		
46796	30831418	Wang Y., Yin H., Li X., Waterhouse G.I.N., Ai S.	Photoelectrochemical immunosensor for N6-methyladenine detection based on Ru@UiO-66, Bi2O3 and Black TiO2.	Biosens Bioelectron	131	163-170	2019		
46797	30717213	Li C.L., Lu P.H., Fu S.F., Wu A.T.	A Highly Selective and Sensitive Fluorescent Chemosensor for Detecting Al3+ Ion in Aqueous Solution and Plant Systems.	Sensors (Basel)	19(3)		2019		
46798	30783736	Biswas S., Li R., Yuan Z., Zhang D., Zhao X., Shi J.	Development of methods for effective identification of CRISPR/Cas9-induced indels in rice.	Plant Cell Rep.	38(4)	503-510	2019		
46799	30791357	Fiaz S., Ahmad S., Noor M.A., Wang X., Younas A., Riaz A., Riaz A., Ali F.	Applications of the CRISPR/Cas9 System for Rice Grain Quality Improvement: Perspectives and Opportunities.	Int J Mol Sci	20(4)		2019		
46800	31128680	Yu N., Liu Q., Zhang Y., Zeng B., Chen Y., Cao Y., Zhang Y., Rani M.H., Cheng S., Cao L.	cs3, a Ycf54 domain-containing protein, affects chlorophyll biosynthesis in rice (Oryza sativa L.).	Plant Sci.	283	11-22	2019		
46801	30813400	Tao H., Fan S.S., Jiang S., Xiang X., Yan X., Zhang L.H., Cui Z.N.	Small Molecule Inhibitors Specifically Targeting the Type III Secretion System of <i>Xanthomonas oryzae</i> on Rice.	Int J Mol Sci	20(4)		2019		
46802	30781405	Zhao M., Wang W., Wei L., Chen P., Peng L., Qin Z., Yuan F., Wang Z., Ying X.	The Evolution and Biocatalysis of FAD2 Indicate Its Correlation to the Content of Seed Oil in Plants.	Int J Mol Sci	20(4)		2019		
46803	30744566	Wang S., Tian Q., Zhou S., Mao D., Chen L.	A quantitative proteomic analysis of the molecular mechanism underlying fertility conversion in thermo-sensitive genetic male sterility line AnnongS-1.	BMC Plant Biol.	19(1)	65	2019		
46804	31086487	Obara M., Fukuta Y., Yanagihara S.	Genetic variation and QTLs related to root development in upland New Rice for Africa (NERICA) varieties.	Breed. Sci.	69(1)	94-103	2019		
46805	30576523	Nadir S., Li W., Zhu Q., Khan S., Zhang X.L., Zhang H., Wei Z.F., Li M.T., Zhou L., Li C.Y., Chen L.J., Lee D.S.	A novel discovery of a long terminal repeat retrotransposon-induced hybrid weakness in rice.	J. Exp. Bot.	70(4)	1197-1207	2019		
46806	30541929	Yang M.H., Wu D.H., Kao C.H.	A Statistical Procedure for Genome-Wide Detection of QTL Hotspots Using Public Databases with Application to Rice.	G3 (Bethesda)	9(2)	439-452	2019		
46807	30788769	Muniandy K., Tan M.H., Song B.K., Ayub Q., Rahman S.	Comparative sequence and methylation analysis of chloroplast and amyloplast genomes from rice.	Plant Mol. Biol.	100(1-2)	33-46	2019		
46808	30825376	Piao W., Suk-Hwan Kim, Byoung-Doo Lee, An G., Sakuraba Y., Nam-Chon Paek	Rice transcription factor OsMYB102 delays leaf senescence by down-regulating abscisic acid accumulation and signaling.	J. Exp. Bot.	70(10)	2699-2715	2019	BZIP72,_,ABA8OX2,NYC1,SGR,NAC58	OsbZIP72, OsAREB2, OsABF4, Osbzip72, OsABI5, ABI5,R2R3-MYB, OsMYB102, MYB102,OsABA8OX2, OsABA8ox2, CYP707A6, OsAba-ox2, OsABA8ox2, OsABA8OH2, ABA8OH2, ABA8'-OH2,nyc1, OsNYC1,sgr(t), sgr, OsSGR, OsSgr,OsNAP, NAP, ONAC058, ONAC58, Os PS1, PS1, OsCTb1, CTb1
46809	30894127	Hirendra Nath Barman, Sheng Z., Fiaz S., Zhong M., Wu Y., Cai Y., Wang W., Jiao G., Tang S., Wei X., Hu P.	Generation of a new thermo-sensitive genic male sterile rice line by targeted mutagenesis of tms5 gene through CRISPR/Cas9 system.	BMC Plant Biol.	19(1)	109	2019	TMS5	TRZ1, OsTRZ1, OsaTRZ1, OsTMS5
46810	30923923	Li P., Lei K., Li Y., He X., Wang S., Liu R., Ji L., Hou B.	Identification and characterization of the first cytokinin glycosyltransferase from rice.	Rice (N Y)	12(1)	19	2019	_	OsEnS-18, EnS-18, Os6
46811	30972509	Lee G., Piao R., Lee Y., Kim B., Seo J., Lee D., Jang S., Jin Z., Lee C., Joong Hyoun Chin, Hee-Jong Koh	Identification and Characterization of LARGE EMBRYO, a New Gene Controlling Embryo Size in Rice (Oryza sativa L.).	Rice (N Y)	12(1)	22	2019	LE	OsRHC1, RHC1, OsLE
46812	31059825	Yang R., Li P., Mei H., Wang D., Sun J., Yang C., Hao L., Cao S., Chu C., Hu S., Song X., Cao X.	Fine-Tuning of miR528 Accumulation Modulates Flowering Time in Rice.	Mol Plant			2019	MIR528,RFI2,SPL9,HD3A	miR528, Osa-miR528, OsmiR528, OsMIR528, osa-MIR528, miR528*, osa-miR528, osa-miR528-5p, MIR528-T1, MIR528-T2,OsRFPH2-10, RFPH2-10, OsRFI2 ,OsSPL9,Hd3a, FT, qHD3(t)*, FT-L 2, OsFTL2, FT-L2, FTL2, OsHd3a 
46813	29677135	Zhao M., Chen P., Wang W., Yuan F., Zhu D., Wang Z., Ying X.	Molecular Evolution and Expression Divergence of <i>HMT</i> Gene Family in Plants.	Int J Mol Sci	19(4)		2018	HMT2,HMT1,HMT4,HMT3	OsaHMT2, OsHMT2,OsaHMT1, OsHMT1,OsaHMT4, OsHMT4,OsaHMT3, OsHMT3
46814	30921464	Li P., Zhang L., Mo X., Ji H., Bian H., Hu Y., Majid T., Long J., Pang H., Tao Y., Ma J., Dong H.	Rice aquaporin PIP1;3 and harpin Hpa1 of bacterial blight pathogen cooperate in a type III effector translocation.	J. Exp. Bot.	70(12)	3057-3073	2019	XA13,PIP1;3	xa13, Xa13, Os8N3, Os-8N3, 8N3, OsSWEET11, SWEET11, OsSWEET11/Xa13, Xa13/Os8N3/SWEET11, Os8N3/Xa13, OsSWEET11/Os8N3,OsPIP1;3. PIP1.3, PIP1-3, RWC3, RWC-3, OsPIP1-3
46815	0	LIU Bao-Yu, LIU Jun-Hua, DU Dan, YAN Meng, ZHENG Li-Yuan, WU Xue, SANG Xian-chun, ZHANG Chang-Wei	Identification and Gene Mapping of a Lesion Mimic Mutant spl34 in Rice (Oryza sativa L.)	Acta Agronomica Sinica	44(3)	332-342	2018		
